LOCUS       DAEBKH010000001        35357 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.001, whole genome shotgun sequence.
ACCESSION   DAEBKH010000001 DAEBKH010000000
VERSION     DAEBKH010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 35357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35357
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.001"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(47..490)
                     /locus_tag="KIL20_000001"
     CDS             complement(47..490)
                     /locus_tag="KIL20_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720078.1"
                     /translation="MKKLGLALAALVALNVSAFAGVITIHDSNLVKVSGGDDTYAKIA
                     LDNAKEGMKNQFNTDNLEIYAIESIKKDDPEHYNVIQRGSFKVMKQEIAKGKTVCYNE
                     FLVVDRKTNWAAEWDIECDHLDRPIKLSNNVNCRSGISTRRYNFK"
     gene            complement(665..749)
                     /locus_tag="KIL20_000002"
     tRNA            complement(665..749)
                     /locus_tag="KIL20_000002"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(713..715),aa:Leu,seq:tag)
     gene            complement(755..831)
                     /locus_tag="KIL20_000003"
     tRNA            complement(755..831)
                     /locus_tag="KIL20_000003"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(795..797),aa:Arg,seq:tct)
     gene            complement(846..922)
                     /locus_tag="KIL20_000004"
     tRNA            complement(846..922)
                     /locus_tag="KIL20_000004"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(886..888),aa:Arg,seq:tcg)
     gene            complement(927..1003)
                     /locus_tag="KIL20_000005"
     tRNA            complement(927..1003)
                     /locus_tag="KIL20_000005"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(967..969),aa:His,seq:gtg)
     gene            complement(1028..1105)
                     /locus_tag="KIL20_000006"
     tRNA            complement(1028..1105)
                     /locus_tag="KIL20_000006"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1068..1070),aa:Pro,seq:tgg)
     gene            complement(1148..1996)
                     /locus_tag="KIL20_000007"
     CDS             complement(1148..1996)
                     /locus_tag="KIL20_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HBD2720079.1"
                     /translation="MRFIFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIIPQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNAMKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            complement(1996..2658)
                     /gene="cgpA"
                     /locus_tag="KIL20_000008"
     CDS             complement(1996..2658)
                     /gene="cgpA"
                     /locus_tag="KIL20_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HBD2720080.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSNLISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            complement(2648..2851)
                     /locus_tag="KIL20_000009"
     CDS             complement(2648..2851)
                     /locus_tag="KIL20_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720081.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(2917..4161)
                     /gene="eno"
                     /locus_tag="KIL20_000010"
     CDS             complement(2917..4161)
                     /gene="eno"
                     /locus_tag="KIL20_000010"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HBD2720082.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEDLIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIELESDEYLGEKL"
     gene            complement(4161..5192)
                     /gene="recA"
                     /locus_tag="KIL20_000011"
     CDS             complement(4161..5192)
                     /gene="recA"
                     /locus_tag="KIL20_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HBD2720083.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            5298..6158
                     /locus_tag="KIL20_000012"
     CDS             5298..6158
                     /locus_tag="KIL20_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HBD2720084.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILEFDQSLCVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTYAVKIADANRKILAPMLME
                     RKLIRVNEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDYLI
                     PSEYEEARNS"
     gene            6170..6439
                     /gene="fliQ"
                     /locus_tag="KIL20_000013"
     CDS             6170..6439
                     /gene="fliQ"
                     /locus_tag="KIL20_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HBD2720085.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            6436..7212
                     /locus_tag="KIL20_000014"
     CDS             6436..7212
                     /locus_tag="KIL20_000014"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HBD2720086.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQICDFDGFLIGGANNLLISPK
                     PKNIGILGDGFDFIQILDQNKDFIHLRIGCKTKSSKMYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATFQGEILRENINFDYRFCPLNMPFFWAEFKLNFG
                     FDILKDEALKNARSNQPSGASFGSIFKNPKNDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGINLENEVIII"
     gene            complement(7236..8006)
                     /locus_tag="KIL20_000015"
     CDS             complement(7236..8006)
                     /locus_tag="KIL20_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720087.1"
                     /translation="MKMRYCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDL
                     NQNVANPNLNQQKALFDSSTLIEKKSQITKDEDIDFAIVLTSRKNFGYFLDGFRVSDK
                     EFSTLFAKNLIQSLKLNWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAK
                     MYAKFTDYVVVVNLQDFYVNITNYFITTSKEGVANVNFKIISTSNGKILAAKNAELNL
                     TLKDQDAKQNYQDIVNQMPKMLASVIDNEIKKLKLTIN"
     gene            complement(8046..8810)
                     /locus_tag="KIL20_000016"
     CDS             complement(8046..8810)
                     /locus_tag="KIL20_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HBD2720088.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPLTSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRPVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYNPLNYKSSPFICVSSRNFLQDFL"
     gene            complement(8891..10159)
                     /locus_tag="KIL20_000017"
     CDS             complement(8891..10159)
                     /locus_tag="KIL20_000017"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HBD2720089.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(10274..11449)
                     /locus_tag="KIL20_000018"
     CDS             complement(10274..11449)
                     /locus_tag="KIL20_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HBD2720090.1"
                     /translation="MHQSVIDPQGLIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAVIAYFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEVAKKSFFYIFL
                     LYALSSLIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAIIVMSMIKFLSNSKK"
     gene            complement(11430..12266)
                     /locus_tag="KIL20_000019"
     CDS             complement(11430..12266)
                     /locus_tag="KIL20_000019"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HBD2720091.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLETSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLSADEALKIVRDTKEALPQ
                     SVVMVAGGREVVLQERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(12268..14370)
                     /gene="topA"
                     /locus_tag="KIL20_000020"
     CDS             complement(12268..14370)
                     /gene="topA"
                     /locus_tag="KIL20_000020"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HBD2720092.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKNAIENALKNPRKLDMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEAYAISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAIENARKFIQTNFGKDYLPSKANVY
                     TTKAKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMNPAISQTQ
                     NVFVKNDRALFKISGRKILFDGYYKVYGDMDKDKILPNLKIGENLKIQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVKIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
     gene            14565..15836
                     /locus_tag="KIL20_000021"
     CDS             14565..15836
                     /locus_tag="KIL20_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD2720093.1"
                     /translation="MNGKTYKFHPNDTKMDKKIIQITEKSGFKAAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGATLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     IDKFGKLKFILPAMVVWTISGVSGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAVGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIEAKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFSLLFLVDSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARARAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLIWSIVIFIVCIVFLFLKQKPRIN"
     gene            15919..17031
                     /locus_tag="KIL20_000022"
     CDS             15919..17031
                     /locus_tag="KIL20_000022"
                     /inference="COORDINATES: protein motif:HMM:NF012235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD2720094.1"
                     /translation="MLKINNLNKKFGNNEILKNINLEIKEGEFLTLVGESGSGKSTLL
                     RIIAGLEEPSQGEILNLNNQDISKQNPRDRNFAMVFQSYALYPHLSVRENLAMPIKAR
                     AKFIHKLPLASFYIKSYKEFKTHLEEKIEQVATKLKITHLLDKKPKQLSGGQCQRVAL
                     GRAIIREPNIFLMDEPLSNLDAKLRIHTRAELSAMHRELNKTFIYVTHDQSEAMTMSD
                     RIAFLVDGELLQVASPDEMYNNPNHLKVAQFIGTPTINTLCVELKSYGFALINKNLSK
                     HKSLAIRAENCFIDPHSQIKAKIYNIENMGNEYLIYTKLLKNDNNFILSLNTQEGKKL
                     QLDSVVGINFDYSKAFIFDEEGKRMDIKLYNLSFAA"
     gene            17028..17885
                     /locus_tag="KIL20_000023"
     CDS             17028..17885
                     /locus_tag="KIL20_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HBD2720095.1"
                     /translation="MKNSLATFCFISPAVLLMLLFLILPIIWVIILSFSDYQLGNGDF
                     HFVGLINYKALLKDPVFFTSVKNTLIYALIVLPLSVLGGLALALLIESKNSAKSFYRA
                     VFFLPVMATLIAMSMVWEYILHPDIGIFNKILALFGVNTINWLSNKDTVLYTLAGIGV
                     WQQLGYNMILFTAGLMSIPTSVYEAAKLDGLNKTQILFKITLPLLLPILFFVLIISSI
                     KAFQVFDTVQVLTNGGPNHSSEVLLFTIYQEAFMFFRTNYASAISVIFLLFILILTLL
                     KIKFLDKKD"
     gene            17889..18702
                     /locus_tag="KIL20_000024"
                     /pseudo
     CDS             17889..18702
                     /locus_tag="KIL20_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866824.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
     gene            18766..19041
                     /locus_tag="KIL20_000025"
     CDS             18766..19041
                     /locus_tag="KIL20_000025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720096.1"
                     /translation="MKKIFFTLALFGALNLAQAKTELVVSYAYPWFKDLHEKLKEDFE
                     KQNPDIEIRFLAPAQNYEEQSARLLREKMINKLPDVSFNSYSYYLHW"
     gene            19035..19964
                     /locus_tag="KIL20_000026"
     CDS             19035..19964
                     /locus_tag="KIL20_000026"
                     /inference="COORDINATES: protein motif:HMM:NF024808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HBD2720097.1"
                     /translation="MVNKNIPKDLTQNLINKKELGFNDNAFKATTLENKIYAIPFASS
                     LPVVYYNMDLVKQAEWNKELPKTWDELFDLAQKINSLNGKSGVYFGETDTWLILALSL
                     ERGGKLINEKGKVDFNNKAWQETFKLLSDFHTLAKMPAIKRSEAISSFYAGNLGILIQ
                     TSAALTQTEKSINFPLKLSKFPGVQSGGELPVGGSVVMLTNDKNKEAALKYIHFVTGE
                     ANAYVPQYTGYMTSNLLANAKLKDFYNKNPNYTIAPSQIELMGNWPSFPGDNALKATN
                     TLWNYAEKLLMGTSTNYEEIAKQAQEEINALLP"
     gene            19976..20584
                     /locus_tag="KIL20_000027"
     CDS             19976..20584
                     /locus_tag="KIL20_000027"
                     /inference="COORDINATES: protein motif:HMM:NF024811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HBD2720098.1"
                     /translation="MIFFDFDGVLVDSLKLWEQACQFSAKKLGFKGIFPQKPYAKLNP
                     VAHKEIGRILGFNPLEFEKIADEYFLEHIHTLVFFDKTKELLKDLSLDFKLSILSASN
                     ENLVRILLEKEQILKYFTNLHCTSSIPKAQTLKKFKQNHSIMIGDCISDIEAALEADV
                     YSIGVLWGWQDKIMLEKANILVNNHAQLKNAIRSFYEIHPFN"
     gene            20562..21356
                     /locus_tag="KIL20_000028"
     CDS             20562..21356
                     /locus_tag="KIL20_000028"
                     /inference="COORDINATES: protein motif:HMM:NF024258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
                     /protein_id="HBD2720099.1"
                     /translation="MKFIHLTDIHYGDKKEAIYSREPSAMMRLAIEDINKNHSDADFV
                     FITGDLTHKGSLESYTLLKQDLTKLNMPYYLILGNHDDRANALEIFNNLKQDENGFIQ
                     YEIQCNDNNVFLVLDTIKLKSHGGEYCQKRQIWLKNALERNQNKNIFICLHHAPFKTG
                     LRAMDFIGLDEKHSLELYKLFNSYKNIKHLFFGHYHSTLCGRWKDISFSSLKGINHQV
                     KFDLNSNEILLEFRNPEYAVVLLNNEVLNIHYNDFTFDKNLIFHEK"
     gene            complement(21399..22664)
                     /gene="secY"
                     /locus_tag="KIL20_000029"
     CDS             complement(21399..22664)
                     /gene="secY"
                     /locus_tag="KIL20_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HBD2720100.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYVELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(22664..23056)
                     /locus_tag="KIL20_000030"
     CDS             complement(22664..23056)
                     /locus_tag="KIL20_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HBD2720101.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFDSIKSVHKISKSV
                     NKIKLIGASAKDLVSKIKDENISVTGSK"
     gene            complement(23061..23504)
                     /gene="rpsE"
                     /locus_tag="KIL20_000031"
     CDS             complement(23061..23504)
                     /gene="rpsE"
                     /locus_tag="KIL20_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HBD2720102.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            complement(23516..23872)
                     /locus_tag="KIL20_000032"
     CDS             complement(23516..23872)
                     /locus_tag="KIL20_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HBD2720103.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            complement(23882..24418)
                     /gene="rplF"
                     /locus_tag="KIL20_000033"
     CDS             complement(23882..24418)
                     /gene="rplF"
                     /locus_tag="KIL20_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HBD2720104.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            complement(24497..24892)
                     /gene="rpsH"
                     /locus_tag="KIL20_000034"
     CDS             complement(24497..24892)
                     /gene="rpsH"
                     /locus_tag="KIL20_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HBD2720105.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            complement(24902..25087)
                     /locus_tag="KIL20_000035"
     CDS             complement(24902..25087)
                     /locus_tag="KIL20_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HBD2720106.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            complement(25089..25634)
                     /gene="rplE"
                     /locus_tag="KIL20_000036"
     CDS             complement(25089..25634)
                     /gene="rplE"
                     /locus_tag="KIL20_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HBD2720107.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            complement(25638..25871)
                     /locus_tag="KIL20_000037"
     CDS             complement(25638..25871)
                     /locus_tag="KIL20_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HBD2720108.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            complement(25871..26239)
                     /gene="rplN"
                     /locus_tag="KIL20_000038"
     CDS             complement(25871..26239)
                     /gene="rplN"
                     /locus_tag="KIL20_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HBD2720109.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            complement(26239..26490)
                     /gene="rpsQ"
                     /locus_tag="KIL20_000039"
     CDS             complement(26239..26490)
                     /gene="rpsQ"
                     /locus_tag="KIL20_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HBD2720110.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            complement(26500..26685)
                     /gene="rpmC"
                     /locus_tag="KIL20_000040"
     CDS             complement(26500..26685)
                     /gene="rpmC"
                     /locus_tag="KIL20_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HBD2720111.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            complement(26672..27097)
                     /gene="rplP"
                     /locus_tag="KIL20_000041"
     CDS             complement(26672..27097)
                     /gene="rplP"
                     /locus_tag="KIL20_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HBD2720112.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            complement(27100..27801)
                     /gene="rpsC"
                     /locus_tag="KIL20_000042"
     CDS             complement(27100..27801)
                     /gene="rpsC"
                     /locus_tag="KIL20_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HBD2720113.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKVGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            complement(27801..28244)
                     /gene="rplV"
                     /locus_tag="KIL20_000043"
     CDS             complement(27801..28244)
                     /gene="rplV"
                     /locus_tag="KIL20_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HBD2720114.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVIVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKAEEKKTVAKKAPAAKKTTTTKAPAKKTTSTKKATAKKES"
     gene            complement(28255..28536)
                     /gene="rpsS"
                     /locus_tag="KIL20_000044"
     CDS             complement(28255..28536)
                     /gene="rpsS"
                     /locus_tag="KIL20_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HBD2720115.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            complement(28538..29368)
                     /gene="rplB"
                     /locus_tag="KIL20_000045"
     CDS             complement(28538..29368)
                     /gene="rplB"
                     /locus_tag="KIL20_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HBD2720116.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVAAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            complement(29370..29651)
                     /locus_tag="KIL20_000046"
     CDS             complement(29370..29651)
                     /locus_tag="KIL20_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HBD2720117.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKVKRFRGRLGQRNDYKKFYVKLPEGVSLENTEA"
     gene            complement(29654..30268)
                     /gene="rplD"
                     /locus_tag="KIL20_000047"
     CDS             complement(29654..30268)
                     /gene="rplD"
                     /locus_tag="KIL20_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HBD2720118.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVSEVNAYLVSVFNAVIIEKSALESITKEG"
     gene            complement(30265..30840)
                     /locus_tag="KIL20_000048"
     CDS             complement(30265..30840)
                     /locus_tag="KIL20_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HBD2720119.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            complement(30850..31161)
                     /gene="rpsJ"
                     /locus_tag="KIL20_000049"
     CDS             complement(30850..31161)
                     /gene="rpsJ"
                     /locus_tag="KIL20_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HBD2720120.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            complement(31359..32120)
                     /locus_tag="KIL20_000050"
     CDS             complement(31359..32120)
                     /locus_tag="KIL20_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HBD2720121.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNEIRY"
     gene            complement(32156..34150)
                     /locus_tag="KIL20_000051"
     CDS             complement(32156..34150)
                     /locus_tag="KIL20_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HBD2720122.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKEISENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRVSHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFSRTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKTTKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(34119..34919)
                     /gene="rsmA"
                     /locus_tag="KIL20_000052"
     CDS             complement(34119..34919)
                     /gene="rsmA"
                     /locus_tag="KIL20_000052"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HBD2720123.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KMLFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDSYLKIYDKLKDEYGRKQRDK"
     gene            34999..>35357
                     /locus_tag="KIL20_000053"
     CDS             34999..>35357
                     /locus_tag="KIL20_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HBD2720124.1"
                     /translation="MIVCAGGNENFSFAKAIGIGLVESAFHLGQLCFKEKPSKLIFIG
                     TCGLYDKGKILEIYKSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFA"
BASE COUNT        11098 a         6386 c         5072 g        12801 t
ORIGIN      
        1 aaacctttat ggtgtgaaag ctctattatt ttagagcttt caagtattat ttgaaattat
       61 agcgcctcgt agagatacca gaacgacaat taacattatt gcttaatttt ataggtctat
      121 caagatgatc acattcaata tcccattcag cagcccaatt tgtttttcta tctacaacta
      181 agaattcatt ataacaaaca gtctttcctt ttgctatttc ttgtttcatt actttaaaac
      241 tgcccctttg aataacatta tagtgttctg gatcatcttt cttgatactt tctatagcgt
      301 aaatctctaa gttatcagtg ttaaattgat ttttcattcc ttctttagcg ttatctaaag
      361 ctatttttgc ataggtatca tctcctcctg atactttaac taaattagaa tcatgtatag
      421 tgataacccc tgcaaatgct gacacattta aagcaactaa agctgccaaa gctaaaccta
      481 attttttcat tttatctcct tgaattgaat tttgtatatt ttaattattt ttcaaatctt
      541 ttgcaagata atttttaaat ttatctaaat taaatttgca ttttatctaa caatcataag
      601 aaattttaaa atgaaataaa aatttatgag aaatcaactc ttgtttgaaa atgataaaag
      661 taagtggtgc ggatgaaagg acttgaacct tcacgcattg ctgcaccaga tcctaagtct
      721 ggcgtgtctg ccaatttcac cacatccgct aaagtggtac gcccaagagg attcgaacct
      781 ctgacctacg gcttagaagg ccgttgctct atccagctga gctatgaacg catataaaat
      841 cttggtggtg cgcccgatag gaatcgaacc cataacctac agatccgaag tctgtcgctc
      901 tatccagttg agctacgagc gcttagtggg gtgagtgatg ggaattgaac ccacgaccct
      961 caggaccaca atctgatgct ctaaccgact gagctacact caccattttg tataaattta
     1021 taaaaaatgg tcggggtgaa aggattcgaa ccttcggccc cttggtccca aaccaagtgc
     1081 gctaaccaga ctgcgctaca ccccgaataa ataaaaggaa atattttatc acaaaataat
     1141 tttaaagtca aggattttca tctcttattc ttaaaaaaac cggaaagcga ggtaaggaat
     1201 ttttggtcaa tccattaaat ttataagtca caatactacc aatttttgga ggattttttc
     1261 tatcttcatc ttttaaacca ctgcctattt taatgatttg tccattaggc attttacaaa
     1321 gtaaggcacc tacttgattt tcaaatttac ccttaccctt gcgaaatcct accaactcac
     1381 attctgcatc atcatagggt tttaatttca tagcattttt acttctgcct ttttcataag
     1441 gacttaaatt tttgcgtata acaatacctt caccttgatt ttttataatg ctttcgtaaa
     1501 attgatttaa attattttga ttttcaactg gaatttgagg aataattttt atataggcac
     1561 taggatattt ttgtaaatac tcttctaaaa cagccaaacg atttttaaga gtgcaagtag
     1621 aaatttgaaa ttcttcgcaa gcatttggca catcaaaaat attataagtt acttccttcc
     1681 ataaggtcaa attgctatcg ccactacgaa ttaaagctga aatttcatca aatttatttc
     1741 ttgctatcca aagctcacca tcaatagcaa aaggagggaa attttttgta aaaaagtcag
     1801 gagtttttat tttgtaattt tggcgagttt ttagatattt cccatcccaa attccacgca
     1861 ccccatcaag tttttcgctc atcaaataag cattaaaatc tttagaatta aaatcttgct
     1921 tatcgaattt gctaagaagt aaaatttcat tagcaaaaac taaacaagca caacatatta
     1981 aaaaaataaa tctcatcaaa gcagattaat catatatcca gttgcatctt tttgaatatt
     2041 ataattataa gttccatcaa gatatattac aagtcgataa tatcctttat gagatccaaa
     2101 gtctatgcgt ttaaaaatag aattactaag gcgtatgttt tttgtagggc taatcaaatt
     2161 agatctaaaa tctataacga ttttacttgg atttcctact gaaaaatctg tgatcatttc
     2221 atcactagtg ttaagtttta ttttgttttt ataaaccgcg taagaaataa aatcataaat
     2281 ctttgcaacc tgtaaaggta tttcaacatt ggctgttgag tttgattctt gtttagagct
     2341 atttttttca ggtatagtaa ctgaaacatc aagtactttt gaaggatcag ggcttttaaa
     2401 tcttgatata gtataagtat cgtgccaatc aatactttta ttaacatcta aatcgatctt
     2461 atcttcactt ccgtctaaat tgatataatt aaaagtgatg ctttttaaaa ttcttgcact
     2521 agaattaaat ttaacttcct ctttttgaaa ttcaggtgga gcaaccaagg ttatattttg
     2581 atctgtcttg aaaggatttt catcagcata taaaagagag gtaaaaataa aaaatattgc
     2641 caaaattcta gttttcattt gggtataatc cttttaattc aaaataatct ttttgtgctt
     2701 tagcattttg ttctttgagc aaaataatct ttttattaag ctcttctttg gtattttcta
     2761 agcttaataa agtatctaaa gaatactgcc caaaaaacat attgccaaaa taaatcgctc
     2821 caattacaac aagaaaagcc caaaaaatca tttttataac atgggtataa aaactttttt
     2881 ttcttgtgct ttcgtcgtat tctttaagta aatcgctcag agcttttctc ctaagtattc
     2941 atcgctttca agttcaattt caagcaagcg attgtatttt gcggttcttt cacctcttgc
     3001 tagggctcct gttttgattt gtcctgtatt taaagccaca gcaaaatccg ctataaaagc
     3061 atcttcactt tcgccgcttc tatgactcat cacacattta tagttatttc tttgcgctaa
     3121 acgcacagtt ctcatagttt gggtaatagt tccgatttga tttggtttaa taagcacagc
     3181 atttgccatt tttttgatga taccttctct taaaatatct tcattggtta caaacaaatc
     3241 atcgcctaca agctgaattt tattgcccaa tttttcagta agcttgatcc aaccttcaaa
     3301 gtcattttca gctaagccat cttcgatact gcaaattgga tattttgcac aaagttctac
     3361 atagcgttcg atcaaatcct cgcttgaaaa agccttgcct tccatgtgat atttgccatc
     3421 tttgaaaaat tctgtacttg ccacatcaag agcgattttt acacgatttt cataacctgc
     3481 ttttttgata caagtcatta aaaggtcgat aggttctgtg ttgttagcta aatttggagc
     3541 aaaaccacct tcatcaccta aagctgtaga atgtccagaa tttgcgagtt ctttttttaa
     3601 tatcgcataa atttcacaaa ctgaacgcaa agcctcttta aagctagtaa aaccaaaagg
     3661 cataatcata aattcttgaa aatctacatt gttgtttgca tgagcaccgc catttatgat
     3721 attacacatt ggcacgggta aaatgctcgc atttgcacca cctaagtaac gatacaaagg
     3781 cattcccaaa gcagccgcag ccgcacgagc tgttgccatg gatacgccta aagtcgcatt
     3841 tgcacctaaa tttgagtaat tatttgttcc atcaagctca cgcaaagtat catcaagttg
     3901 agtttgatta aaagcatcta gtcctaaaat ttcatctgca atggtctcat tgacatttgc
     3961 aacagctttt aaaacgcctt ttccgccaaa tctttcatca ttatcacgca attctaaagc
     4021 ttcttttgaa cctgtacttg caccacttgg aactatggcc gcacctacac ttccatcgct
     4081 tagcgtaact tcggctttta cggttggatt tcctctacta tcaagaactt cataggctct
     4141 aacatcttca attactaaca ttattcttct ccttcgtcat cttcgctacc gctgatcata
     4201 ccttctattc ccatagaatt ttgaattgct tttgtgattt catctgcaat ttcagggttt
     4261 tcttttaaga aagcttttga gttttctcta ccttgtccaa gttttttatc tttataagaa
     4321 aaccacgcac cacttttatc tacgatatca agttttacac cataatcgat caattcacct
     4381 tcacgactta aaccctctcc aaacatcaca tcaaattcag cttgtctgaa tggaggagca
     4441 actttatttt taactacttt tactttaacg cggtttccta taggttcttc gttttgtttt
     4501 aaggttgcta cttttctaac atctaaacgc acagaagcat aaaattttaa tgcatttcca
     4561 cctgttgtgg tttcaggagt accataaccc atagcaccga ttttcatacg aatttggttg
     4621 atgaaaatta ctgtggtatt cattttatga actatacctg taagttttct tagagcttga
     4681 gacataagtc ttgcttgaag tcctacatgt tgatcgccca tatcgccttc aatttctgct
     4741 tttggggtaa gtgctgcaac gctatctact acaataagat ctactgcacc acttcttgct
     4801 atagtttcta caatttctaa ggcttgctct ccaaaatcag gttgagaaac atacaaatca
     4861 tctgtattta cacctaaatt tttagcatat tttacatcaa gagcgtgctc tgcatcaata
     4921 aaagcacaaa ctccacctgc tttttggcat tctgcgataa tgtgtagagt tagagtggtt
     4981 ttacctgaac tttcaggccc ataaatttct ataattcttc cttttggaac accgcctata
     5041 cctaaagcaa gatcaagtcc aactgaacct gtgcctatgc tatcgatttg ctcgacttct
     5101 ttatccccta gtcttaagat agtgcctttt ccaaaggttt tatctaaact ttttagggca
     5161 gcgtctagag attttctttt attatcatcc ataactttcc ttaaaaattc taaattttta
     5221 gttagaattc taacaaaata aaattaaata atgatttatt ttgctagaat taaagcaaag
     5281 atttaaagga agcatagatg aaaaaaatta ctattgcaca ttctcctgat gctgatgata
     5341 tttttatgta tatggctatt aaatttgggt ggatagggaa tgattttgct tatgaaaata
     5401 cagctttaga tatacaaact ttaaatgaat ttgccttgaa aaatgaattt gatgctacgg
     5461 ctatttcttt tgggctttat cctttaatcg cttctgagta tgcgctttta cgcacagcag
     5521 tgagttttgg tgaaggttat gggccaaaac tcatcaagaa aaaagacacg catttaaaaa
     5581 gaaattttaa agtcgctttg agtggagcaa ataccaccaa tgctttgatt tttcgtatga
     5641 aataccctga agcaagaatt atttataaga attttttaga cattgaaaat gcagttttaa
     5701 gtggcgaagt agatgcagga gttttaatcc atgaaagcat tttagaattt gatcaaagtc
     5761 tttgcgtgga agcagaactt tgggatatat ggcttgaatt tgctaaagaa aatttgcctt
     5821 tgcctttagg tggaatggct ttgcgtcgct ctttgccttt aagcgatgcg attaagattg
     5881 aaagagattt aacctatgct gtaaaaattg ccgatgcaaa tcgtaaaatt ttagccccca
     5941 tgcttatgga aagaaaactt atccgtgtta atgaagaaaa acttgatact tatcttaatt
     6001 tatatgccaa taaaaactct attagcatga atcaaactca acttttagct gtagatacgc
     6061 tttttaaact aggatatgat tataaatttt atgataaaat catacatgta aatgattatc
     6121 ttatccctag cgaatacgaa gaagctagaa attcttaaaa aggataaaaa tggacgaaag
     6181 taccttagtt gctcttggag tgcaaacctt taaaatcaca cttttgcttt ccttgcctat
     6241 gcttttagca gggcttattg cagggcttgt aatcagtatt tttcaagcaa ctacacagat
     6301 taacgaaatg acactttctt ttgttcctaa aatcatcttg gttgtggtta ttttaatctt
     6361 tttaatgcct tggatgacta caactatgat tgattttact gagaatatac taaatcaaat
     6421 tccaactttt atcaaatgat cattgatttt aaaaaatact cttctgtacg tataggaaat
     6481 gaatttgaag ttttagtttt ggatcaaatt tgtgattttg atggtttttt aataggtggt
     6541 gcaaacaacc ttttaattag cccaaaacct aaaaatatag gaatattagg agatggtttt
     6601 gattttatac aaattttaga tcaaaataaa gattttatac atcttcgcat aggctgcaaa
     6661 acaaaatcaa gcaaaatgta tcgctttgcc aaagaaaata atcttaaggg ttttgagtat
     6721 ttaagcaaaa ttcctggcac acttggtggg cttttgaaaa tgaatgcagg acttaaagga
     6781 gagtgtatca gtcaaaattt aattaaaatt gccacttttc aaggcgaaat tctaagagaa
     6841 aatataaatt ttgattatcg tttttgtcct ttaaatatgc cttttttttg ggctgaattt
     6901 aaattaaatt tcggttttga tatccttaaa gatgaagctt taaaaaatgc aagaagcaac
     6961 caacctagtg gagcaagctt tggctctatc tttaaaaatc caaaaaacga ctttgcagga
     7021 cgtttaatcg aagctgtagg acttaaagga tttagcaagg gagatgctat gttaagcgat
     7081 aaacacgcaa attttttaat caataaaaaa aatgcaagtt ttgaagatgc gttttttctt
     7141 atcgaattgg ctagaaaaaa agtctttgaa gaatttggca taaacttaga aaatgaagtg
     7201 attattatct aaaaattttt caatatatct ttaaattaat tgatagttaa ttttaatttt
     7261 tttatttcat tatctataac actagctaac atttttggca tttgatttac aatatcttga
     7321 taattttgtt ttgcatcttg atcttttaat gtcaaattta attctgcatt ttttgctgca
     7381 agaatttttc cattgcttgt agaaataatt ttaaaattaa cattagccac accctcttta
     7441 ctagttgtga taaaataatt tgtaatattt acataaaaat cttgcaaatt taccaccaca
     7501 acataatctg taaatttggc atacatttta gccttatctt tttcttgtgt taaaaaagga
     7561 cttacattta taagttttgc atctttaggg ctaaaatatg acaaagtttt aggactttga
     7621 taaataccat ttgcagcaga attaacccaa ttaagcttta agctttgaat caaattttta
     7681 gcaaataatg tagaaaattc cttatcactc accctaaaac catctaaaaa ataaccaaaa
     7741 tttttcctag aagttaatac aatagcaaaa tcaatatcct catctttggt gatttgcgat
     7801 tttttttcaa ttaaagtaga actatcaaac aatgcttttt gttgatttaa atttggattt
     7861 gcaacatttt gatttagatc tattacttca aagctatctg cgcttttttc aattttaata
     7921 acctttttct gagaaaaatt attcgctaaa agattagaac ttaaaactaa acttaaaaac
     7981 aaaatgaaac aatacctcat cttcatcctt ataaactatt taaatataaa attatactct
     8041 ttattttata aaaaatcttg taaaaaattc ctagatgaaa cacaaataaa aggactggat
     8101 ttataattta aagggttata taaaatgtat tttttagaaa aatcccccat aaatcctcca
     8161 ttttgattaa tcaaaaaatc tcctgctaca atatcccaaa tattaagctt ttcaaatctt
     8221 ttataaactc ctgccctagc ctctaaaata gcacaaaatt tcaatccaga gcctatatta
     8281 atagcttcta attgatgctc ttttgcaaag tcttcatctt ctttactaag atgattaaca
     8341 ctcaataagg ctttatattt atttttctcg tattcttgct ggtcaatttg caaaggttta
     8401 tcgtttttat aaaccttggt ttttgcatga gcatagaata tatcaccttt tgatggattt
     8461 tgtataagcg ataaaacagg gcgattgtca tgaactaaac ttatcataac gcaaaattca
     8521 tcgctgcctt ttaaaaaacc acttgttcca tcaagaggat cgataagcca aaaagttttt
     8581 aattcttcac actcttcttt gctgagtaat ttttcttctg ataaaatttt aatatccgta
     8641 gaacctaaaa tatcatttag aattttatta gaagcaagat ctgctgatgt aagcgggctt
     8701 ttatcttctt tttcccaagt tttgaaattt tttctctctt ctaaaatagc tttagaagct
     8761 tgattgctag catttatagc aatttctaaa aatttatcaa gattaagcat gattataaga
     8821 ctttctataa gattttttaa aattatacaa gaagattttg tggaattttt aatttccaca
     8881 aaaattttaa ttaaatttta ctagtttcac ccaaataaag ttgtcttgga cggactattt
     8941 taagactttc ttgctctttt tgttctatcc actgagctat ccatcctggg gtgcgtccta
     9001 taacaaataa agtagcaaac atttcatttg gaatacctaa ggcttttaaa ataagtccac
     9061 tatgaaaatc aacattcgga tatagccctc tttgaacaaa ataatcatcg cttaaagcaa
     9121 tctcttctat acgcgttgct actttaataa gattggtatc aatacccaac tcatcaataa
     9181 gttgatcacg aagtttttta agtacttttg ctctaggatc aaaattttta taaaccctat
     9241 gcccaaagcc catcaagcgg aaaggatcgt ttttatcttt agctcttttg atgaattcat
     9301 ctactctatc aacactacct atttgctcaa gcattctaat aacaccttca ttagctccac
     9361 catgtgcatg accccaaagc gcaccaatac ctgctgctat acaggcataa ggatgagcat
     9421 gagttgaacc cacagcacga accgttgaag ttgaagcatt ttgctcatga tctgcatgaa
     9481 gcataaaaac tgtatcaagt gcttttactt ctataggttt aagctctaca tgatcgtaag
     9541 gataagttct taacatatat aagaaatttt ctgtaaaacc acgatctaaa tttggataag
     9601 ccataggaaa gccgtgttta tatctataag cggtggcgac tatagtaggg attttagcta
     9661 ctattctagc tgccatttcc atatattctt cttttacatt catgtttaaa tgatcaggat
     9721 aaaaagcact aagcgatgaa acagcacctt gtaaaactgc cataggatga gcattatcag
     9781 ggaaagaatc aaaaagacga tgcatacctt catggataaa agaacgtttt ttcatttcat
     9841 aacgaaatgc ttcaagacgc gtagcatcag gtaattcttt ataaagcaaa agatgaacca
     9901 catctaaata aagtttgttt tcagcaagcc actctatagg atagccacgg tgcattaaaa
     9961 ttccgttttc tccatcaata taagtgattt ttgatttaca agtagctgta gaagtcaagc
    10021 cctcatcata agaaaacatt cctgtttgtt tataaaaact tgacatatct acaacgcttg
    10081 ggccagttgt accatcatat ataggaaatt catagctttt tccatttcta ttatcggtta
    10141 tagtaacgga atttgacatt ttcgctcctt ttattgttac ttttattaat tctaacaaaa
    10201 aaggacgatt atgagttttt ttattattaa atttttaaga ttttgtttgc ttttttgagt
    10261 aaaaaagtaa ctttcatttt ttagaattag aaagaaattt aatcatactc ataacaataa
    10321 tagcctcaaa taacgctgtt aaaataagcg ctgaataaag cttctcatca ataaccttgc
    10381 ccgaataacc cagagtagct gttgctataa gcaaggttaa aggcatagaa tgactaagac
    10441 caaataaaat catattttta aaaccaattc tttttaaaaa aacacttgca cataaaattc
    10501 ttaaacccac cataacaaac ataagtaaaa atgcttgtaa aacgatttta taatctaaaa
    10561 tcattttaag atcaaaggtt gaacctatat ggataaaaaa aatagggatc aaaaacccat
    10621 gtccaaaagt agaaagctta tgctcaagat cttttttatg atcaaaaaaa gtagctataa
    10681 atgagcctgc tataaaagaa ccaagaacga tttcaagttt tgtaataacc atagcaacaa
    10741 tgatcagtat aaaaatcgcc atacaaaatc ttatatcttt ttcattttta tcttcccatg
    10801 gcataagcac aactttaagc tgaggatacc accaaaaaag cacaccaagc attttaaatc
    10861 cgagcaaaca aagtcccaaa aagatattaa gatataaaat actttgcgct acatcaataa
    10921 tacctgttcc ttcgcgcaaa aaagctcccg ctatagtcaa aagcacaata gaaatcacct
    10981 cagctaaagt agctactatc atagcaatat ttagccaata acactctttt ccaaaatcct
    11041 taaaaagcaa agataaaagc cctacactca tcacaggtat aatgataaca aatactaaag
    11101 aaagtccaaa aatccatact ataagagaag ataaagcgta aagtaaaaaa atataaaaaa
    11161 aacttttttt ggcgacttct ttatccatat taaaaaaggc tcttaaattt acttccatac
    11221 ccgctataaa cattagataa taaaaaccta cattggctaa aagtgcaaaa ttttcacttt
    11281 ttcctataaa accaaaatat gcaattaccg cacctaaaat aatttcagta gctgaaagag
    11341 gcaagcgtaa aatttttgca atatgcggag aaaaaagtaa gcataaagct ataacaataa
    11401 gaatttttag atcaattaaa ccttgcggat caatgacact ctgatgcaaa agtaaatccc
    11461 atttctttta attttattat atcttgactt ggttcttcac ctttagtggt taaataatcc
    11521 cctataacaa tagccccagc acctgcttga aaaatttcat actgcctttc ttgcaatacc
    11581 acttcacgcc cacctgctac cattaccacg ctttgaggca aagcctcttt ggtgtcacgc
    11641 acgattttta aagcttcatc agcactaagc cttggaactt gtagttttaa attttcattg
    11701 gctataaaaa aattaatagg tgttgaaaaa ggctgtaatt cttgcaaaga ttttctaaaa
    11761 cttagtctat cttcttcact ctcacccata ccataaattc caccacaaca aagcataagt
    11821 cctgcttctt tagcgtttaa attggtttga aatctacttt cccaagtatg agtggtgcaa
    11881 atttgtggaa aaaattcctt agaagtttca agattgtgat tataagaaaa aattcctgct
    11941 tttttaagtt ctttgagttg ttccacgctt gccataccat tacaggcaat taaaagcaaa
    12001 ttaggcactt ctttttgcac agccttagca gcctcacaaa catactcaag cttttcatca
    12061 tcaagcccaa gtcctgctgt aaccaaacaa aaacccaagg cttcattttt ctttgccatt
    12121 ttcgcttcta aaacgatttg tgaaagttct ttgcgacgat atttttgaat atctgttttt
    12181 acatgggcac tttgggtaca gtatttacag tcttctgaac aatttccact cgctatattt
    12241 gaaatagcac aaagcatgat ttgcattcta atccttcatt tcttttttga ttttgcactt
    12301 taagcattct aggaatgtac cttttttaag ctcttttatc actaaagttt cgccacactc
    12361 ttcgcatttt tcttcacttg gtttgtattt gcttataaaa ttgcattttg gataagcact
    12421 acagccataa aatttaccgc gttttgaaaa gcgttctacg atttcacctt tttgacaact
    12481 tggacaagta atacctgtac cattagcttt agcttttgcg gcagtatttt cgctttcatt
    12541 tttactttca ctttttaaat ttcttgaata cttacatttt gggaaattta aacacgctac
    12601 aaattctcca aaacgccctt ttctaatagc aagctccccg ccacaatcag gacaactttc
    12661 acctagtttt gtgacagttt tttgactagc aatttttgtt tttccttctt cgatttttct
    12721 cataaaagga tagtaaaatt cttttaaagt ttcttgccaa tctgccttat cttcagcgat
    12781 ttcatctaaa gtattttcaa ggtttgaagt aaatttacta tctactatat cgctaaaatt
    12841 tttttcaagc acttcggtta cattaaaagc aacatcacta ggaatgagtt gttttttgtc
    12901 tatttttaca taatcacggc ttgtaagtat agaaattgtt ggtgcataag tagaagggcg
    12961 acctatgcct aaactttcaa gtttttttac aagtcctgct tctgaatacc ttgaaggtgg
    13021 ttcggtaaaa tgtgagttca tttctaaatt ttgtattttt aaattttcac ctattttaag
    13081 atttggtaaa attttatcct tatccatatc accataaact ttataatatc catcaaaaag
    13141 gatttttcta ccgcttattt taaaaagtgc tctatcattt tttacaaata cattttgagt
    13201 ttgagagata gcaggattca tctgacaagc taaaaagcga ttgtaaataa gtgtgtaaag
    13261 ttttaactca tctttgtcta aaaatttggc cgcaatttct ggagtaaaac ttaaatttgt
    13321 agggcgtata gcttcatggg cttcttgagc acctttagcc tttgtagtat atacatttgc
    13381 tttgcttgga agatagtctt tgccaaaatt tgtttgtatg aattttcttg cattttctat
    13441 agcttctttg gctaaattta aactatcggt tctcatgtag gtaataaccc ccatcacgcc
    13501 ttcatgggta tttactccct catagagttt ttgagctatc atcatggttt ttttagggtt
    13561 aaaaccaagg cgattgctag cactttgttg caaggttgaa gtcataaaag gaggtggtgg
    13621 agcgattttt ctttctttgc tttcaatgtc gcttatagca taagcttcat ttttacaagc
    13681 ctctagtata agcttagcac gatctttgtt ggtaatggta agtttttcta tcttagcttt
    13741 gtcaaactca accagttctg catctaaatc tttttgaaaa atcatatcta tactaaagta
    13801 ttctagtggc acaaaagcac gaatttcttt ttcacgatcg actatgatct ttaaagctgc
    13861 actttgaaca cgccctgcgc taagccctct ttgaattttt tgtcctaata aggggctgag
    13921 tttatatcct acaatgcgat ctaaaaggcg tctagtttgc tgagcattta cagagtgcat
    13981 atctaatttt cttggatttt ttaaagcatt ttctatagcg tttttagtga tttcatgaaa
    14041 aacaatgcgt ggtaaggtgt tttcatcttt tcctatagct tttgcaatat gataggctat
    14101 agcctctcct tctctatcct catccgttgc aagataaact tctttggcat ctttggcttt
    14161 gcttttaagt tctttaacta aggcgctatg atcacttgtg attctatact cagggataaa
    14221 ttcatcatct tctattttaa tcccaaagct tgatttaggc aaatctctaa tatgtccttt
    14281 agaagcgata acttcataat cttttcccaa aaaatttcct atggttttag cttttgcagg
    14341 agattctact atgattaaat ttttcttcat tttgcaccct tgttaaataa aaagctgaat
    14401 ttagctaaaa atatttaaaa ttctacttat aaaatatatt ttaatcaagc taaaatattt
    14461 taaaaacaaa actatcataa caaaataaat aaaatataat tttaagtaat tttaaataca
    14521 aaccataatt tttagagtat aataaagcaa aaaaggcaaa aattatgaat ggcaaaactt
    14581 ataaatttca tccaaatgac acgaaaatgg ataaaaaaat aattcaaatt actgaaaagt
    14641 ccggatttaa agcggctgtg ttttctatgg ccgctatgac tatgctagga agcgtggtca
    14701 tttcatctgc tctgcctgct atcaacagac attttgaaga acttttaacc caaagtggcg
    14761 ctactcttgc ttcaagtttc acattagccc atcttgatat acttgttcgc ttagttttaa
    14821 ccatccctgc tatttttgtt gtcattttat ctccatttgc tggtatttta atagataaat
    14881 ttggcaaatt aaaattcatt cttccagcta tggtggtttg gactatttct ggagtaagtg
    14941 gctttttctt aaatgatatt tatgctatac tgacttcaag agctattttt ggtatggcaa
    15001 ctgcttttat aatgacaggt gcttcggctt tacttggaga ttattatagt cgtggtggct
    15061 ttaatcgcag agaaaatgct ttaagtcttc aaggattttt ttgtgcggta gggggtgctg
    15121 tttttatttc tattgcagga tttgtttcga gttattcttg gcgttatcct tttttagtat
    15181 atggacttgg aattttaatt accttaatgg ctatcattta tctttttgaa cctagaaaat
    15241 ttaaattcta taatcataca aaaatagaag caaaaacaaa ttattggcaa tttttcccta
    15301 tctattttat aggttttttt atcatggtag tttattatat ttcgccaact caacttcctt
    15361 actatataga agaacattta ggattggatc ctaaatatat aggtatttcg atgtctgtat
    15421 ctgcactatg ttatggtttt ttctctctaa gctatagata tattataaaa ttcttaagta
    15481 ttaaaactat ctatgtttta actcttttta tcgtatcttg ttctttttcg ctgctttttt
    15541 tagtagatag ctttttcaca gttttaatcg ccttagcttt gcttggaatg ggcggaggta
    15601 ttatgcttgt aaataatacg gcttatcttt tttcaatctg tcctgaaaat gctcgcgcta
    15661 gggcttatgg aattttagca agttgtatat ttttaggaca atttttaagt cctattatct
    15721 ctcaacccat cgttagacaa atgggtcttg tagatgcttt tttaatatgg tcaatagtaa
    15781 tttttatagt gtgcattgtg tttttatttt taaagcaaaa acctaggata aattaatctt
    15841 caagcattgc atctgtttcc aaaaagtttc caatatttga tttaatttta aaaattttcc
    15901 aaaatatgga gcttggatat gttaaaaatt aacaatttaa ataagaaatt tgggaacaat
    15961 gaaattttaa aaaacatcaa tcttgaaatt aaagagggtg aatttttaac cttagttgga
    16021 gaaagcggaa gtggcaaatc aactcttctg agaattatag ccggccttga agagccaagc
    16081 caaggtgaaa ttttaaacct taacaatcaa gatataagca aacaaaatcc aagagataga
    16141 aattttgcta tggtttttca aagctatgcc ttatatcctc acttaagcgt gagagaaaat
    16201 cttgctatgc ctattaaagc aagagctaaa tttatccata aacttcctct ggcttctttt
    16261 tatattaagt cctataaaga gtttaaaact catttggaag aaaaaattga acaagtagca
    16321 acaaaactta aaattacaca ccttttagat aaaaaaccca aacaactttc tggaggacaa
    16381 tgtcaaagag tcgctctagg tagggctatt ataagagaac ctaatatatt tttaatggat
    16441 gaacctttat caaatttgga tgctaaatta cgcattcaca caagagctga attaagtgct
    16501 atgcatagag aattaaataa aacctttata tatgtcacgc acgatcaaag cgaagctatg
    16561 actatgagcg acagaatagc ttttttggtt gatggtgagc ttttgcaagt tgcaagccct
    16621 gatgaaatgt ataataaccc caaccattta aaagttgctc aatttatagg aacacctaca
    16681 atcaatacct tatgcgttga attaaaaagc tatggttttg ctttaatcaa taaaaactta
    16741 tctaaacata aaagtctagc cataagagca gaaaattgtt ttatagatcc acattcacaa
    16801 attaaggcca aaatttataa tattgaaaat atgggaaatg aatatttaat ttataccaaa
    16861 ctcttaaaaa atgataataa ttttatttta agtttaaata cacaagaagg taaaaagctt
    16921 caactagact ctgttgtagg aattaacttt gattattcaa aagcctttat ctttgatgaa
    16981 gaaggtaaaa gaatggatat taaactttat aatttgagtt ttgcagcatg aaaaattcac
    17041 ttgcgacttt ttgttttatt tctcctgctg ttttattaat gcttttattt ttgattttac
    17101 ctattatatg ggtaattatt ttaagtttta gtgactatca gcttggaaac ggcgattttc
    17161 attttgtagg attgattaat tataaagcct tgctaaaaga tcctgttttt ttcacttcag
    17221 taaaaaatac tttaatttac gcccttattg ttctaccttt aagcgttttg ggaggtttgg
    17281 ctttagcctt gcttatagaa tctaaaaata gtgcaaaatc attttataga gctgtctttt
    17341 ttctacctgt tatggcaacc ttgatagcca tgagcatggt ttgggaatat attttacatc
    17401 cggatatagg aatttttaat aaaattcttg ctttatttgg ggttaataca atcaattggc
    17461 tttcaaataa agacacagtt ttatatactc ttgctgggat tggagtatgg caacaactgg
    17521 gctataatat gatcttattt acagctggat taatgagcat acctacttcg gtatatgaag
    17581 cagcaaaact cgatggatta aacaaaactc aaattttatt taaaatcacc ctacccttgc
    17641 ttttacctat tttatttttt gttttaatta taagttctat aaaagctttt caagtttttg
    17701 ataccgttca ggttctaaca aatggagggc caaatcattc tagcgaggtt ttattattta
    17761 ccatttatca agaagctttt atgtttttta gaacaaatta tgcctcagct atttctgtaa
    17821 tatttttatt atttattttg attttaactc ttcttaaaat taaatttttg gataaaaagg
    17881 attgatttat gtttagaatt ttgcgccatc ttattttggg tatattgtca ttatttttta
    17941 tttttccttt tgtatggatg gttataacta gttttaaacc tgaaaatgaa attttttcca
    18001 atgcttttca ttttttttcc acaaaatttt accctaattg aaaactacac aaaagctttt
    18061 aaggaaaatg acttgttgca cttccttttt aatggatttt ttgtatgttt tgccattcta
    18121 ttaatacaaa ttataatcgc ttatccttgt gcttatgctc tatccaaata caaatttaaa
    18181 ggacaaaagt ttttgcttgt tattatagtg tgctctttgc ttattccaac tcaagctatt
    18241 tgcgttcctt ggtatatttt aatgtattat tttggagttt tagattcata tctagctctt
    18301 attttgcctt ttagcatttc agtctttggg atttttttaa ttaggcaatt tatcaattgt
    18361 attcccaatg atataattta tgcagcaaga atggatggtt taaatgaatt tagtatactt
    18421 tgcaaaatta tattaccact aaccacccct gctttgattt cttttggaat tttttccata
    18481 gttgctcatt ggaatgatta tttttggcct ttaattgctg taagttcccc acaatatttc
    18541 actccaaccc ttggagtaat ttcttttaaa aacaatgaag caggtacgga ttatggaacc
    18601 ttaatggccg cctcaacaat agtagtagcc cctcttataa taggtttttt acttgcacaa
    18661 aaaagattta tacaaggtat tgccaataca ggcataaaat agcttgttaa aacttattag
    18721 aattacatta ttctaataag ttttaacaat tttaaaggat ttaaaatgaa aaaaatattt
    18781 ttcaccttag ctctttttgg agctttaaat ttagcccaag caaaaacaga acttgttgtt
    18841 tcttacgctt atccttggtt taaagatttg cacgaaaaac ttaaagaaga ttttgaaaaa
    18901 caaaatccag acatagaaat aagattttta gcacccgcac aaaactatga agaacaaagt
    18961 gctagacttt taagagaaaa aatgatcaac aaactccctg atgtaagctt taacagctat
    19021 agctattacc tacattggta aataaaaata ttcctaaaga tttaacacaa aatcttatca
    19081 ataaaaaaga attaggcttt aatgataatg cttttaaagc aaccacttta gaaaacaaaa
    19141 tatatgctat tccttttgca agctctttac ctgttgtata ttataatatg gatttagtca
    19201 aacaagcaga atggaataaa gaacttccta aaacatggga tgaacttttt gatttagctc
    19261 aaaaaatcaa ctcattaaat ggaaaaagcg gggtgtattt tggagaaaca gatacttggc
    19321 ttatattggc tttaagtctt gaaagaggcg gaaaactcat taatgaaaaa ggcaaggtag
    19381 attttaacaa taaagcatgg caagaaactt ttaaactttt aagtgatttt cacactttag
    19441 caaaaatgcc agctataaaa cgctctgaag ctataagctc attttatgcg ggaaatttag
    19501 gcatacttat acaaacctca gcagctctaa ctcaaacaga aaaaagcatt aactttcctc
    19561 taaaactttc taaatttcca ggtgttcaat caggaggaga attacccgta ggtggatccg
    19621 tagttatgct aactaatgat aaaaataaag aggcagcttt aaaatatatt cattttgtaa
    19681 caggggaagc caacgcttat gtacctcaat atacaggtta tatgactagc aatttattag
    19741 ccaatgcaaa attaaaagat ttttataata aaaatccaaa ttataccatt gctccttctc
    19801 aaatagaact catgggaaat tggccttcat ttccaggaga taatgctcta aaagctacaa
    19861 atactttatg gaattatgct gaaaaacttc ttatgggaac aagtacaaat tatgaagaga
    19921 ttgcaaaaca agcccaagaa gaaatcaatg ctttattacc ttaaaagggt ataagatgat
    19981 attttttgat tttgatggtg ttttggttga tagtttaaaa ctttgggagc aagcttgtca
    20041 atttagtgca aagaaattgg gttttaaagg aatatttcct caaaaacctt atgcaaaatt
    20101 aaatcctgtt gctcacaaag aaattgggag aattctaggt tttaatcctt tagaatttga
    20161 aaaaatagcg gatgagtatt ttttagaaca catccatact ttagtctttt ttgataaaac
    20221 aaaagaatta ttaaaggatt tgagtttaga ttttaaactt tccatattaa gcgctagtaa
    20281 tgaaaattta gttcgaattc tccttgaaaa agaacaaatt ttgaaatatt ttaccaatct
    20341 tcattgtaca agctcaatac caaaagcaca gacgctcaaa aaatttaaac aaaatcactc
    20401 tatcatgata ggtgattgta ttagcgatat agaagctgca ctagaagctg atgtttattc
    20461 tataggagtg ctatggggtt ggcaagataa aatcatgctc gaaaaagcta atatcttagt
    20521 caataatcat gctcaattaa aaaatgctat aaggagtttt tatgaaattc atccatttaa
    20581 ctgatataca ctatggtgat aaaaaagaag ccatttactc aagagaacca tcagctatga
    20641 tgcgtttagc tatagaagat atcaataaaa atcatagcga tgctgatttt gtatttataa
    20701 caggagattt aactcacaag gggagtttag aatcttacac tcttttaaaa caagatttaa
    20761 ccaaacttaa catgccttat tatttgatct taggcaatca tgatgacaga gctaatgcat
    20821 tagagatttt taataattta aagcaagatg aaaatggttt tatacaatat gaaatacaat
    20881 gtaatgacaa taatgttttt ttagtactag acactataaa acttaaaagt cacggaggtg
    20941 agtattgtca aaaacgccaa atttggctaa aaaatgcctt agagagaaac caaaacaaaa
    21001 atatatttat ttgcttacat catgctcctt ttaaaactgg ccttagagct atggatttta
    21061 taggacttga tgaaaaacac tctttagaac tttataagct atttaactca tataaaaata
    21121 taaaacactt attttttggg cattatcata gcactctttg tggaagatgg aaagatattt
    21181 ccttttcttc tcttaaaggc atcaaccatc aggttaaatt tgatttaaat agcaatgaaa
    21241 tattattaga atttagaaat ccagaatatg ctgtcgtttt actcaataat gaagttttaa
    21301 atattcatta caatgatttt acttttgata aaaatttaat ttttcatgaa aaataaatta
    21361 tccaagcagg aaatttttcc tgcttggata attttaaatt acaaacctac cgcacttaaa
    21421 gtttggtatt tactcatata aatttgagct tcaatttttc tcatcgtatc aagtgctact
    21481 tgaactacaa taagtacaga agtaccgcca aaatgaaaag gtacacccat aaatttcacc
    21541 aaaacccaag gtaaggttgc aacaagccct aaataaatag aacctgataa agttaaacga
    21601 gaagctactt cgttaagata acttgaagtt ccttcacctg gacgaattcc agggataaaa
    21661 ccaccttgtt ttttcaaatt ttctgctata tctttagcat taaatacgat agaagcataa
    21721 aaataagcaa agaaaattac aaacaagaaa gttaaaacat gaaacaaata accatttgga
    21781 tttaaaaagt cattaatggc ttgtagataa ggatttgtac tagtttgtaa aatcgttgtt
    21841 ggaaacatca aaatcgcact agcaaaaatc ggtggaataa ccccactaag attgagttta
    21901 ataggaatat aattcataat gcgtttgttt tgattttgca ttacaacttt acgagaataa
    21961 gaaataggaa ttcttctttc tccaagttct acataaataa tcacgcctat ggtgattaaa
    22021 atcaaagcaa aaattgcaaa agcggttaag aaattcatct cgcctgaatt gatttgccct
    22081 acagttcctg aaatcgctct tggaatacct gaaacaatac ctgcaaaaat gattaaagaa
    22141 ataccatttc ctatacctct ttgtgtgatt tgttcgccaa gccacattaa aagcatagtt
    22201 cctgcaagca tagaaatagc acaaagtgcg ataaacatat ttaaatcttc caccattata
    22261 gcccctgcac caccacgacc gtgcaagctt tgcaaaccta tagcaacgcc tatactttga
    22321 accaaagtaa tcacaatagt cgcataacgg ataatttgca tatatttttg catactatca
    22381 cgctcttttt tcatcttacc aatatttgga aaagttgctg caagaagctc cataataata
    22441 gaagcagtaa tataaggcat aatacctaaa gaaataatag aaaagcgttc agccgctcca
    22501 ccactaaaaa cattaaataa acccaaagca ttgttttgat tgttgttaaa aaattccgca
    22561 atcacatcag cattgacgcc aggaactggc acataagcca gaaccctata agcaaacaaa
    22621 aatgctaagg tgattaaaat cttattcgtc aatgctctat tcattatttt gatccggtga
    22681 cgctaatatt ctcgtctttg atttttgata ctaagtcttt tgcacttgca ccaattaatt
    22741 tgattttatt cacagatttt gaaattttgt gaacactttt aatgctatca aatgtaattt
    22801 cactaagctc ttttacagct gtgatttttt caacattgat cacataaggt ttttgaattt
    22861 tagaagtaaa acctactttt ggtagtcttc tttgaagtgg ttgttgaccc ccttcaaaac
    22921 ctcttttttc attataacct tttctagcag tttgaccttt acccccttta gtagcagtct
    22981 tacccatgcc agaaccttga ccacggccaa ttcttttagt tttatgcgtt gaacccgctg
    23041 cttttgttaa attcatcttc ttatcctttt aacattgtta aagctttgat tgtagcacga
    23101 accacattag ctgaattatt tgaacccaaa gacttggtta agatgtcttt aatacctgca
    23161 agttccacga tagggcgtgt agaaccacct gcgataactc ctgtaccttc actagctggt
    23221 ttaagtaaaa ttctacttgc gttatatttt acctctacat cgtgagcgat agttgagcct
    23281 ttagttttaa cttcaacgat atttttaaac gcatcgtcaa cagctttacg gatagcatct
    23341 ggaacttcct tagccttacc ataaccaaca cctactaaac ctttgcggtt tccaacgata
    23401 actaaagcag taaatctaaa tcttctacca cctttaacaa ccttagtaac tctgccgata
    23461 tcgacgatta cttcttcaaa ttcttctcta ttatattttt ccatcgattt accccttata
    23521 gcctaatgcc attttctctt aaagattcag ccaatgctgc gataacacca tgatatacat
    23581 aaccatttct atcaaaaaca gcttgttcta tctttttagc ttttaaagtt ttagcaaatt
    23641 cagcagcgat ttttttagca ccttctttat ttgctttaac gccaagtttg cgtccatcaa
    23701 ctgctgctaa agttacagct tttacatcat caatcgcttg gatatataga gttctgttcg
    23761 atttaaatac agaaattctt ggaaaatttt cacaacctga aattttcgct ctaattcttt
    23821 tttttctttt gattcttaaa gttagttttc tttttaatac atttgctctc atattctacc
    23881 cttacttctt agatgtctta ccagctttgc ggataatgcg ttcatcagaa tacttaacgc
    23941 cttttccttt atatggctct ggcggtctaa attcacgaat ttgagcagca acttgaccta
    24001 caacttgttt atcacttcct ttaactgcaa tagtattttt atccactaca atttcaattc
    24061 cttctggaat atcataatta ataggatgag aaaaaccaag gcttagttct aaaactttac
    24121 cttttaaagc tgctttataa ccaactccat tgatttcaag agtttttgaa aaaccttgag
    24181 ttaaacctac aacgatattg taagctaaag ctctgtaagt tccccaataa gctctacttt
    24241 gtctgtcttc accttttgga gaaaaaagaa tattattatc tttaatctca acatttacat
    24301 ttgctttagt atcaagttct tttgctaaat ttcctttttt aaatttaagc aaatttcctt
    24361 ctaattttac ttctactcct gctggaatag caatcggttg tttacctata cgagacatat
    24421 ttttcctttt tatttgtcta ggatatttct acttttttaa aagaatggat acccaatgcc
    24481 ataaaaagca gattttttac caaatggtac ataaaatttc gccgccaaca cctgctttat
    24541 aagcttcatc attagctaaa acaccatgac ttgtgctaac tacgatagta ccataaccat
    24601 ttttaaaacg cttgatttca tctttacctt tataaacacg acgaccaggc ttagaaattc
    24661 ttttaagctc attgataaca ctcttacctt tttcatcgta ttttaaaact acattgataa
    24721 atttcttttt atcttcttca ataacattaa aactctcaat atagccctta gcttgaaaaa
    24781 ttccaactaa agcttctaca actttagaat gtaaaagctt ggttgtttca agctttctca
    24841 ttcctgcatt tctgatacga gtgagtgaat ctgaaataat atcatttatc atattttatc
    24901 cttaccaact tgctttctta agacctggaa tcaaaccttc gttacccatt tttcttaagc
    24961 aaactctgca aattccaaaa tctctataaa ccgaatgcgg acgcccacaa atttggcatc
    25021 ttgtataagc tctaacctta aatttaggct tgcgtgccgc ttttgcaatc attgattttt
    25081 tagccatctt actttccttt tgtaaatggc acaccgataa gttctaataa cttttgtgcc
    25141 tgtttatcat tttgtgctgt tgtaactata gaaatgttca taccatgagt tcttaaaatt
    25201 ttatcatact ccacttctgg gaacatcaac tgctcatcaa gaccgaagtt atagtttccg
    25261 cgtccatcaa aaccatctct acttaaacct ctaaagtctt tcacccttgg caaagcaata
    25321 gaaattaatt tatcaagaaa agcatacata ttttcttttc ttaaagttac cattacaccc
    25381 acaggaaaac cttcgcgaac tttaaatcct gcgactgatt ttttagcttt agtaatcaca
    25441 gccttttgtc ctgcaattaa agaaatagta tctgcaacat tttgcaatac tttttgatct
    25501 ttagccaact caccagcacc tacgctgata actacttttt cgatcacagg gataagcata
    25561 ggatttttaa tatcaaattc tttaaccaat gcaggtttaa tgctttgatt gtatttttct
    25621 tttaatctca tcatcgctta ctcctgaact tttgccacat tggaaatatc cattggcatt
    25681 tctttattga taaaaccacc atttgggttt ttctcgctcg gcttaatagc ttttttagcg
    25741 attttgcatc cttcaactac cactttaagt gtttttggat ataccgctaa aactttacct
    25801 gttttaccct tatcatcacc tgtgataacc ttaacgctat cacctttttt gatttttaat
    25861 ttaaccgcca ttataatacc tccggtgcta gtgaaacgat tttcataaag ccaccatatc
    25921 taacttctct gcccactggc ccaaagatac gagttccgat aggctctctt ttgttatcaa
    25981 gaataaccgc agcattttca tcaaaacgaa tcaaagaacc attatctcta tgaatttctt
    26041 ttttagttct aacgataacc gcttttacca cttgaccttt tttaactttt ccatttggta
    26101 aagctttttt aacagatgca acgattacat cacctacggt agcgtatctt cttttactac
    26161 cccctaaaac cttgatacac attaattctt ttgcaccgct attgtcagca actgcaagtc
    26221 ttgtaaaact ttgaatcatt actcaactcc tgtagctaat acagatttta agcgaaatga
    26281 ttttcttttt gaaagtggtc tgcattctac tgcaacaaca gtatcaccaa ctttaacttc
    26341 atttctctca tcatgaatta gatatttttt aaagcgttta acaatttttc tatatcttgg
    26401 atgaaccact tttctttcaa ccaaaacact tgcggttttt tcaccagcga ttttaacaac
    26461 aacgccttga atttctcttt taaatgccat tttctatcct tatcttaaag cgttaattgc
    26521 tgtatttatt ctagcaatgt ctttttttac ttggctaatc tcttttggat tagtaagttg
    26581 cattgttttt agcttttgtt ttaaagtgaa taaaagcacc tttttttctt ttagcattgt
    26641 tgcaagctca gctgctgttt tatctttaat ctcagtatat ttcattttgg ctctctcttg
    26701 taacaaactt agttttaaat ggaagtttat gcatagctaa agtcaatgct tctcttgcca
    26761 tttcttcgct tactcctgcc atttcataaa tgatacggcc tggcttgata ttcattaccc
    26821 attcttcaac agcaccttta cctttaccca tacgagtttc taaaggtttt tttgtcaaag
    26881 gcttatctgg gaaaactcta atccaagttt ttccttgtct tttaacaaaa cgagttaaag
    26941 cgatacgtgc tgcttcgatt tggcgtgagt taatgcgtcc tgcttcagtt gcttttaatg
    27001 caaattcacc aaaagtaaat tctgttccac gattagcata acctctgtta cgccctttca
    27061 tcattttgcg atatttagtt ctttttggca ttaacatgat tatttacccc ttcttgtgcg
    27121 tcttggcttt ttagctggag cactttcttc agttttttca ggttgcatac ctttgtgtaa
    27181 tacttcacct ttaaagatcc atactttaac ccctatgttt ccataagtag ttctagcttc
    27241 tgcaaaacca taatcgattt ttgctcttaa agtatgaagt ggaacgcgtc cttcaagata
    27301 ccattctgtt cttgccattt cagcaccacc taaacgacca gaaactgaaa ctttaatccc
    27361 tttagcacct gctttttgcg caccttgaat tacttttttc atcgctcttc taaaagcaat
    27421 tcttttttca agttgagttg caacactttc agcagcaagt tgagctgaag ctcctacttt
    27481 tctttcttct ttgatattga tatttacatc tttaccgatt aaatcttgca attcttttct
    27541 taaattatca acatcactac cttttttacc gatgatgata cctggtcttg cagcaactac
    27601 agtaacgcga agttttttag cagttctttc tactaaaatt tgactgattc ctgcgtaata
    27661 aagttttctt tttaagaaag ctctgatttt gtaatcttca ccgatatttt ctactaaatt
    27721 tgctttagtc ggaaaccatc ttgattccca gtttctattg attcctagtc ttagaccaat
    27781 tggattaact ttttgtccca ttagctttcc tttttcgctg ttgctttttt agtgcttgtt
    27841 gtttttttag ctggagcttt tgttgtagta gtttttttag ctgctggagc ttttttagct
    27901 actgtttttt tctcttcagc tttcacttct gcttttgcca cttctactaa aatatgtgaa
    27961 gttggttttc taatacgact tgcacttcct ctagctcttg gtctaaatct ttttaatacc
    28021 gcagctgcat ccacacgaca actttttaca atcacttcat ttgcttcaaa gccgccattt
    28081 gctaccgcac ttgaaattgc atttgcgatg tattttgcac ctttatttgg cataaatttt
    28141 aaactagcca tagctaattc tgcattcatc ccctgaactt ctctagcaat caatcttgct
    28201 ttagttggag ataatcttat gaatttaatt aatgctttac tcatatctta tcccttactt
    28261 accaattttc ttttgcacag agcctttatg ccctttgaat gtgcgtgttg gagcaaattc
    28321 accaagttta taaccgatgt gattttcagt aatataaacc ggaatgaagc ttttaccatt
    28381 atgaacatta aatgtaagtc ctatcatatc aggagtaatt gtgcttcttc ttgaccaagt
    28441 tttaattggt ttattatcat tagccttttt agcagcgatg acttttttca ttacatgatc
    28501 atcaacaaaa ggaccttttt ttagtgatct agccatctta ctttcctttt cttcttgaaa
    28561 ttattagctt atcgctagct tttttacgac gagttttcgc acctttagtt ggtttacccc
    28621 atggagttac tggatgacgg cctgaatttt tcttaccttc acccccaccg tgcgggtgat
    28681 ctactgggtt catagcagaa ccacgagttt gtggacggat acctctatgg cgatttctac
    28741 ctgctttacc gatagttacg ttagcccatt cttcatttcc aacttcgccg atacttgcca
    28801 tacattcagc taaaacttgt ctcatttcgc cacttgcaag tcttaaaata acatattttt
    28861 cttctttacc cataagttgt gcataagcac ccgcagaacg gatcatttga ccgcctttac
    28921 ctggttttaa ctcaacatta tgaacaatag tacccacagg aatattttta agtttcattg
    28981 cattacctgg tttaatatca agtccgcttt cagcagctgc aacgatatct ccaacgctta
    29041 atccacgtgg ttgaagaata tatctttttt ccccatcttt ataagcaatc aaagcaattc
    29101 tacaatttct atatggatca tactcgatcg cttctacttt gccttctata ccgaatttac
    29161 gacgtttaaa atcaataatt ctgtaaagtt ttttagcacc cgcttcttta tgacgacttg
    29221 taattcttcc atagctgtta cgacccgcgt gtgctggaag tttaacaagt agtgagcgta
    29281 cacttggttt agctgtaata tcttcagaac ttaaacctgt gatatatctt ctacttggag
    29341 tatatggttt ataagtttta attgccatct taagcctccg tattttctaa gctaacacct
    29401 tcaggtagct taacatagaa ttttttgtaa tcgtttcttt gacctaaacg acctctaaaa
    29461 cgcttaactt ttccatccat tcttaatgaa ttgatgcttt ttggagttac accaaaatac
    29521 tcttttaaaa ccgcttttaa gcctgtttta gtcatctttg gtgaagtttg aataactacg
    29581 acaccttgct cttgcaaatt caaacttttt tctgtgtaaa gtatagtctt tatatcagta
    29641 atatctgcca taattatccc tcttttgtaa tagattctaa cgctgatttt tctatgataa
    29701 cagcattaaa tacagatact aaataagcat ttacttcgct tacatcaact acatagcaat
    29761 ttgctaaatt tctgtaagct aaaagtgttt tttcatctag taaatcttta acgattaaag
    29821 catctttgac gccaagtttt ttaatcacag cgtttgcatc ttttgtttta ccactttcaa
    29881 tagccaaaga atcagcagta aataacgcac ctttagctgc tttatctgct aaagctcttt
    29941 caagcgccaa tcttttttgt tttttattta ctttttggaa gtagtttctt tcatttgttg
    30001 gaccaaaagc aaccgcaccg cctacccaaa cgttagttct tgttgaaccc gctctagcac
    30061 cgccacgacc tttttgtctc caaggttttt taccaccacc acttacatca cttctacctt
    30121 tagtatgagc tgtatttgct cttaaacttg caaggtaaga ttttacatac aagtaaagat
    30181 tgtgtggatt tacttccgca tattttgaag gtaaatcaag ttcacctgct ttttctaatt
    30241 tatcatttaa aacaactact ttactcattt tgcaatcctt attttaccca tagcaccatt
    30301 ataacctggt actgcacctt taactactaa aattttgttt tcagcatcat aagatacaac
    30361 ttcgttttta acggttactt tagtatttcc ataatgtcct gccattttca tacctggttg
    30421 aacacgacct ggccattctc tattaccaat agatccgtgg cgtctgtgaa atctagaacc
    30481 gtgacttgct ggaccccctg cgaagttatg tcttttcata acaccgctat aacctctacc
    30541 tttagtgtta aagcttactt ttaaaatttt tgcttcattt aatggagttt catctaaatc
    30601 tcctgcttca gtgtttgcta cttctaaagt cgcaaatcta ttgtattctg cagaaagatt
    30661 atactttttt tgttgtcctg cgacacattt attacttgct ttaccttttg gatatgctac
    30721 taaagccttt ccgccttcaa cttcacatac ttttgcattt acaactctta gtaaagttac
    30781 agcgatactt ggattagtaa ttgttctgct cattccgatt ttttctacaa tatattccat
    30841 atcttatcct tacttaccca tagctcttac ttcaacgctt acttctggcg ctaaatcaag
    30901 cttagttaaa gaatcaactg tatctggagt cgctgctact atatctagca tacgcgcgtg
    30961 aattcttatt tcaaactgct cacgagaatc tttgttaatg tgtggagatt ttaaaactgt
    31021 atagcgtttg attttagtag gcattggtat cggacctctg atatccgcac ctgttctttt
    31081 aacagcttct acgattgctg caactgttct gtctagtact cgatggtcat aagcttttag
    31141 cttaagccta attctttcca taatatttcc tttaaaaaga actcgttagt taaaaactaa
    31201 ccaatttata aaaattgaaa tgagagtata taaaatcttg ttttcaaagt caaggaattt
    31261 gatgaaattt ttctattatt ttccttttaa aaaggataaa aatagaattt ttagaattta
    31321 aaaattatca ttatttttta aatttttgta tataatggtc aatatcttat ttcattaaat
    31381 tttaaaaaat ctcttaattt ttcatattct ccattttcca aatagcgatg ttttcctgcc
    31441 ttcaacatac caagatctaa agccccaaaa gcaacacgct taagatccat gacttcaaga
    31501 tcaaaatgtc caaaaaagcg tctaagctct ctatttttac cttcatttat aaccactcta
    31561 agcttagtat aacctccact tgatccaaaa atttcaaagt ctataaaagg agcaaaactc
    31621 atagaggtaa ttttagtttt tgcatgtgcg cctttttttt catttttaat ctcaagtcca
    31681 ttttgcatgg cttcgatgac ttgtttgctc accgtgcctt taactttaag gtagtattct
    31741 ctttctaaat cgctatgcat taaagcatcg gcaatcacag gagaatctgt aagcaaaagc
    31801 aagccctcgc ttgcataatc caatctacct acgctaagcc aagtactaaa ttgtcttggc
    31861 aaggtatcgt atatagtttt tcttccacga tcgtcttttt tactgacaat ttcacctttt
    31921 tgtttatggt agattatcac gctaaattgc gttctttttt gcactctttt acctttaaca
    31981 aaaactttat catcaaattt aacttcatcg cttaaaaggg caattttgtt gtttattttt
    32041 actaagcctt gtttgataag ttcatcagct tcacggcgtg aataacgagt gttatgggat
    32101 ataaatttat taattctcat ttgatcttcc ttaaaaaggg cgtttttgcc cttttttaca
    32161 ttacaaaaat agttggaact atggttgggt attttttaat ctttctaaag atatgctttc
    32221 ttaagacttg gcggatttgg ttttctaaaa atcttggatc attgagtact tcatctttaa
    32281 cattgatgaa aaattgccct aaaacttcag ccatatcttt actaaaagca tgatcgtgtt
    32341 tgtcagctac taacccatag ctaaacactc ttggcttgtt gatcagtgtt tttgtagttt
    32401 tgtcaatttg tgcgataata actactatac cactatctgc aagtttttga cgatctataa
    32461 ctacatcatc ggcaatttgt ttgttgattt gattatccac aaaaacttta cctgttttta
    32521 cggtttttat gcgtttgaca tatttttggc aaagttctac ttgatcgcca tcactcataa
    32581 gatagatatt tctttcgggg ataccgcatt tcatcgctgt ttctttgtgt ttggtgatat
    32641 gattgtattc tccatgaacc ggtaagaaaa atttaggttt agtaagggtt agcataagtt
    32701 tttgctcttc tatgctagcg tgtccgctta catgaatttc actaaattct tgatacgcta
    32761 ctttagctcc tgcttttaaa agatagtcaa gcaccgcaga aacacttgct tcatttcctg
    32821 gtatggcttt agctgaaatg attacttgat ctgtaggctt aatctttata aatttatgct
    32881 catcagttgc cattctataa agcgcactca tggtttcgcc ttgacttcct gtagttacaa
    32941 taagcacttc attgtcttta tatttgctta cctcatcagc atcgatgaaa atttttctat
    33001 caagtttaat atagcctaat tccatagtag tataaagatt tctttccata gaacgaccaa
    33061 taacacaaac ttttctgccg tattttaaac cataagtgat agcctgataa acacggtgga
    33121 tattagaact aaaagtactc atgatcaccc tacccttagt acgcgaaaaa atttgatcaa
    33181 aagttggccc tacagagctt tcactttttg tataaccttc tttataagaa tttgtactat
    33241 cacttaaaag acataaaact ccttcttctc cataatgtgc taaacgtcct aaatctgttg
    33301 gatagccatc aattggagtt tgatcgattt taaaatcacc tgtgtggata atcgttcctg
    33361 cttttgtttt gatcgcaagt gctgaagcat caatgataga atgcgtgata tgaatccatt
    33421 ctatatcgaa ttcgcctatc tcataaacac ggcgtttttc tacagggcga aaccatttgc
    33481 gttctgcttt taagccatgt tcttcaaatt tgtttgaaat cattcctaaa gctaaaggtg
    33541 tagcgtagat aggaaattgg aattctttaa agaaataagg caccgcaccg atatgatctt
    33601 cgtgtgcatg agtgatcact ataccacgaa ttttatcttt aatttttctt acatagtcaa
    33661 aatcagggat gataatatct accccatgca tagttccatc aggaaaactc atacctatat
    33721 ctactataat tgcatcttta ttggtttcaa aaacactgat atttccacca atttctccta
    33781 agccccctaa aggagtgatg cggattttat gttcgctaga attgttatat tttaaagggt
    33841 gtaagcggtt ttcatgtgaa acacggttag cttctataca ttctgcaaga gcgatttgcc
    33901 aatcttcatt acctgtgagt tttgaaggaa gattgcgatt ttttttcttt tttttctcag
    33961 ttttattttc tgagttttca gaaatttcct tgttggaatt ttgatcgatt tttggagtat
    34021 cgttttcatt ttgtaaagaa tcggctaatt tttttctgcg atttttatat ttatagcgtt
    34081 tattgttttt tgaatttgag ttcggatttt gttcgttttt atttatctct ttgttttcgt
    34141 ccatattcat cctttaattt gtcataaatt ttaaggtatg aatcaacgca aatttcatgt
    34201 ggtctgatgt tttcttttaa gccaagagtg cttaaaactt ctaaaacttt tgctttatat
    34261 gtttttaaat ttcctaagag ttgttttcta ggagctttaa aacagtcttt tagaaaattt
    34321 ttgaaatttt ctatttcgca aagttcatca aaatccttag ttttaatcaa actcatcacc
    34381 gctgacataa cttttggcgg tggattaaaa cattgtggat caacatcaaa aagcattttt
    34441 ctttcgcaaa tcattgcact taaaacacct aaggaagaaa actcactatt tccttcttta
    34501 gcgcagaatt tttcagccat ttctctttgc accattacaa taagccctag acaattttta
    34561 tcttctaaag cttttaatat aatgtgactt gcaacataat aaggcaaatt tgcaaccaaa
    34621 aaatatggtt tttcatcaag actaggatta aaagcttcgc ttgcgtcttg atggatcaag
    34681 ttaaattttc cacattcaag ttctttttga aatttctttt ttaaaatagg tatgagatca
    34741 ttatcgattt cataagcttt tacttgagaa atttttaaaa gttcttgcgt taaatcacct
    34801 aagccaggcc caatctcaat aatattgttc atctctttgg gtatggcttg gatgattttt
    34861 gctaatacgc ttttatcgat taaaaaattt tgtccgtatt gtttttttgc tttaaccata
    34921 agaaataatt ttatctaaaa attcttaatt aagtcttttt aggtagaatt atttttgtaa
    34981 aatttcataa ggatcaaaat gattgtttgt gcgggtggaa atgaaaattt ttcttttgca
    35041 aaagctatag gtataggttt ggttgaatca gcttttcatt tgggtcaact ttgcttcaaa
    35101 gaaaaaccat caaaacttat atttatagga acttgtgggc tttacgataa gggtaaaatt
    35161 ttagaaattt acaaaagttc acacgctttt aatgtagaat tttctaaaat ttcacatgct
    35221 ttttatactc ctgcaaaata tgaaatttgt ttagaaaaag aaaatgtttc tcgtgaaaca
    35281 atcaagatca attcttcaaa ttatatttgt caaaattcaa aagcagcaaa agaattttcg
    35341 aaattaggtt tttttgc
//
LOCUS       DAEBKH010000002        34943 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.002, whole genome shotgun sequence.
ACCESSION   DAEBKH010000002 DAEBKH010000000
VERSION     DAEBKH010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 34943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34943
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.002"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(76..1113)
                     /locus_tag="KIL20_000054"
     CDS             complement(76..1113)
                     /locus_tag="KIL20_000054"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HBD2720125.1"
                     /translation="MKKLFICCLFIGVCMKKAKSRIAILGTGGTIAGFIDSTIATTGY
                     TAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDG
                     VVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVANKE
                     AKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTKAHT
                     KNAPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKD
                     VLKELLKKGLKVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLILALTKTSD
                     PKKIQEYFLKY"
     gene            complement(1167..2738)
                     /gene="recJ"
                     /locus_tag="KIL20_000055"
     CDS             complement(1167..2738)
                     /gene="recJ"
                     /locus_tag="KIL20_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HBD2720126.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMVTPQFVVKEIL"
     gene            complement(2725..4356)
                     /locus_tag="KIL20_000056"
     CDS             complement(2725..4356)
                     /locus_tag="KIL20_000056"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HBD2720127.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYTRENKIPFLGICLGMQLALVEFA
                     RNVLKLKDANSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKHGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            4476..5099
                     /locus_tag="KIL20_000057"
     CDS             4476..5099
                     /locus_tag="KIL20_000057"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HBD2720128.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            5219..6604
                     /locus_tag="KIL20_000058"
     CDS             5219..6604
                     /locus_tag="KIL20_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HBD2720129.1"
                     /translation="MDKQFFQDFLMLSQAHTIATLAILCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFALQYLANFPDAEEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIRVIIEIDKNIKIFSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIHEG
                     DKQIREIQTFSNIILGLIPSNIIAAINKENIIAIVIFSFFIGISAKKISKKEEYEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MLIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLTGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(6643..9012)
                     /locus_tag="KIL20_000059"
     CDS             complement(6643..9012)
                     /locus_tag="KIL20_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HBD2720130.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     EKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(9028..10356)
                     /locus_tag="KIL20_000060"
     CDS             complement(9028..10356)
                     /locus_tag="KIL20_000060"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HBD2720131.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLINDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEVIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ILHAKELLEHAKEVVSYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDVIFKRTFK"
     gene            10434..11336
                     /locus_tag="KIL20_000061"
     CDS             10434..11336
                     /locus_tag="KIL20_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HBD2720132.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNEILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILVAKNKKAQIDLKALFEKKLVQKEYLALANGKIE
                     ENFIIDKAINLAKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKEQIESILDEKLTPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFNINSKINIKEIFNNSIK"
     gene            11449..12327
                     /locus_tag="KIL20_000062"
     CDS             11449..12327
                     /locus_tag="KIL20_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HBD2720133.1"
                     /translation="MKFVNFIQGQKPNLGVLNSSGKIVSFDDLGIETNDMNEFIIHFD
                     KFKHKLTDLDSKIAYEIPQENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATAPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNGELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            12391..13305
                     /locus_tag="KIL20_000063"
     CDS             12391..13305
                     /locus_tag="KIL20_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HBD2720134.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAKLGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLAEQATVPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENITLAIAE
                     FEKTLITPNSPFDRYLSGDQNAISTQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            13295..15073
                     /locus_tag="KIL20_000064"
     CDS             13295..15073
                     /locus_tag="KIL20_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HBD2720135.1"
                     /translation="MTNKKSSFLIKFIILSTLVLTFILVLLAIIFNNYSSSKNNKDLI
                     NIVQQLEISDEKINSIFQNSFNFINYDPSVQAIKKMQENFTKLKTFGIDINKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMSSMLSVLSTE
                     NILQKTTLNQLNNLMKEIKNDTKSENLQLFLKHYKMIVKQISIMQDNSSIYENNSLMK
                     ELKQLNTFTQNTIEQSNLFKFYIALAVFGITLVLFVFFILLTLKKVIMPIHTLEKLSA
                     NLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIENAKSSHQNSQKLKN
                     NSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQDMHILMDKVELTL
                     SELVNLINENNEKEQNIVANMDNLTQSADNIIEITNSIKDIADQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKALMDLIHDSMKETS
                     SKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNIDKVNELANSVKDL
                     SCEINNISQNVLNGASKLSEKLSSFQ"
     gene            15178..15345
                     /gene="dba"
                     /locus_tag="KIL20_000065"
     CDS             15178..15345
                     /gene="dba"
                     /locus_tag="KIL20_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HBD2720136.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            15357..16883
                     /gene="dsbI"
                     /locus_tag="KIL20_000066"
     CDS             15357..16883
                     /gene="dsbI"
                     /locus_tag="KIL20_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HBD2720137.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGVPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(16904..17578)
                     /gene="queC"
                     /locus_tag="KIL20_000067"
     CDS             complement(16904..17578)
                     /gene="queC"
                     /locus_tag="KIL20_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HBD2720138.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESVFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            17654..18880
                     /locus_tag="KIL20_000068"
     CDS             17654..18880
                     /locus_tag="KIL20_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HBD2720139.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRAEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMHEFFKENPTIDG
                     VNFFEICESLREYFKI"
     gene            18972..19496
                     /locus_tag="KIL20_000069"
     CDS             18972..19496
                     /locus_tag="KIL20_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YagU family protein"
                     /protein_id="HBD2720140.1"
                     /translation="MKKYFQKRYTLAFFIGILAGIFGAIVKWGWEVPFPPRNPNVFWP
                     ADALERVTPPKIFLEQLGLPTDWTYMFSGMQMPLSIFIVHVGFSIIFGVAYCMIAEKW
                     HRITMWQGAVFGFFVYLFAHVIIMPLIAEVPPLSEIPFDEHLSEIFGHIVWLWGMEIV
                     RRDIRNRITKEIEE"
     gene            complement(19508..21184)
                     /gene="ilvD"
                     /locus_tag="KIL20_000070"
     CDS             complement(19508..21184)
                     /gene="ilvD"
                     /locus_tag="KIL20_000070"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HBD2720141.1"
                     /translation="MRSDAIKKGHLRAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNDYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSRELIANSIE
                     TVMNAHQLDALICIPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYESKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAKQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
     gene            21344..21991
                     /locus_tag="KIL20_000071"
     CDS             21344..21991
                     /locus_tag="KIL20_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HBD2720142.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVSAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            22056..22295
                     /locus_tag="KIL20_000072"
     CDS             22056..22295
                     /locus_tag="KIL20_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HBD2720143.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITVE"
     gene            22328..22903
                     /locus_tag="KIL20_000073"
     CDS             22328..22903
                     /locus_tag="KIL20_000073"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HBD2720144.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(22904..24349)
                     /locus_tag="KIL20_000074"
     CDS             complement(22904..24349)
                     /locus_tag="KIL20_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HBD2720145.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERVLNFKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLIYRSLWEEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGVSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAIIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADTAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVEGVEANDLKREFKEGKA
                     INVEISNSKKTYKADLVLLAMGFSGCEEAISKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(24360..28850)
                     /gene="gltB"
                     /locus_tag="KIL20_000075"
     CDS             complement(24360..28850)
                     /gene="gltB"
                     /locus_tag="KIL20_000075"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HBD2720146.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKNANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHIAYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
     gene            complement(28985..30292)
                     /locus_tag="KIL20_000076"
     CDS             complement(28985..30292)
                     /locus_tag="KIL20_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HBD2720147.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSVSLNDVTNTMYFAAICMIAGLFLALFVFYRKPREYQE
                     IEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
     gene            30496..31734
                     /locus_tag="KIL20_000077"
     CDS             30496..31734
                     /locus_tag="KIL20_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HBD2720148.1"
                     /translation="MKQNNQKEDRRDFLKNIGFGLLGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YVSNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNVYGV"
     gene            31737..32078
                     /locus_tag="KIL20_000078"
     CDS             31737..32078
                     /locus_tag="KIL20_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HBD2720149.1"
                     /translation="MKKIILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(32104..34413)
                     /gene="gyrB"
                     /locus_tag="KIL20_000079"
     CDS             complement(32104..34413)
                     /gene="gyrB"
                     /locus_tag="KIL20_000079"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HBD2720150.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEASYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(34442..>34943)
                     /locus_tag="KIL20_000080"
     CDS             complement(34442..>34943)
                     /locus_tag="KIL20_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HBD2720151.1"
                     /translation="SFSIPKKAIMEMQKLFYEKIEIFYDQNMLIAKNENFEFFTKLIN
                     DKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMKLHFNKDKIIFEGISLDNM
                     EAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNEPNSAFIVKSQGLSMI
                     IMPMIL"
BASE COUNT        11816 a         6264 c         5027 g        11836 t
ORIGIN      
        1 atatactatt aataggattg aaaggcttga cttagggaag ataagttccc taagtttaga
       61 aatatttaaa aaattttaat attttaaaaa atactcttga atttttttag gatcacttgt
      121 ttttgtaagt gctaatataa gcaaaactct tgctttttga ggatttaaat cttcagcact
      181 aataaaacct aatttttcat ctgaatcact cacagcaaca caacctgcta caacccttga
      241 acttacaaca accttaagcc ctttttttaa aagctctttt aaaacatctt tttgattttt
      301 gtgtatactt cctgctccac ttcctgcaac aactatgccc ttagttccat gttcaaataa
      361 agcttttgca gcgacaccac taccatcatt tgaatagcta taaagaatat ctacttttgg
      421 caaacttgtg agtttgctta catcaaaagg agcgtttttt gtgtgagctt tagtaacatt
      481 attatagaaa aagactttac catctactat ataacccaaa tccccaaaat caggagaaga
      541 gaaagcatca acatttaaac tatgagtttt tactacgcct ctagcgctta aaattttatc
      601 atttatagct accataacac ccttattctt agcttcttta ttggcaacta atgccactgc
      661 attataaaga tttttcggac catccgcact tatagcagtt gatggacgca tagcgccaac
      721 tagaactacg ggcttatcac ttttaatggt taaatttaaa aaataagcag tttcttccat
      781 agtatcagta ccatgagtta tcaccacacc gtctatcccc tcagcaaaaa gcttagcaat
      841 ttttttagca agccttaacc aaatttcatc acacatattt gaactatcaa tatttgctat
      901 ttgctcccaa ctaatatctg ctaaatctct aatttgcgga actgctttaa ttaatacatc
      961 tatatcaatg gctccggccg tatatcctgt tgtagcaata gtgctatcaa tgaagcctgc
     1021 tatcgttccg cctgttccta aaatagcaat ccttgattta gcttttttca tacatactcc
     1081 tataaaaaga caacatataa ataatttttt aatctcttgt atattaattt tttaatgtta
     1141 ttaatgcaaa ttataagtaa aaatttttat aaaatctctt taacaacaaa ctgtggagtt
     1201 accattcccc taaattcatt cttagaaata cttccaagca aagaaatatt ttgattcaat
     1261 tctggctctt tatcaaaatt aaaaaataaa gcttctatgg ttttattttc cttagttaaa
     1321 acaagcttta agtgtttttc atctttacct agaagttttt tattttttac acaaagattt
     1381 tctaaaacaa aaaaaggtcg tggattttta tgtccaaaag gttcaaaaga ttctaaaatt
     1441 tcaagcattt caaaatcaat ttcgctaggt tctaagattc ctaaaatttc atctgtatcc
     1501 aaaaattcac tttcagaaat ttgcgaacat tcttttttga ttttattttt aaattgttca
     1561 aaattttcag agtttaaact gattccagca gcacctttat gaccaccata attgcttaat
     1621 atagaatttg tcttagaaat taaagctaaa atatcaatct tgccaacact tcttgcgctg
     1681 ccttttaagt gttcttcatt ttgagaaaat acaaaagcag gtttattaaa atgtttagct
     1741 aaacgacttg ccacaatccc taaaacacct tcatgccaat ttaaacccga taccacaata
     1801 caagaatcgt tttcatcgat ttgatttaaa ctatcttcaa aaagctgttt ttcttcatct
     1861 ttacgacttt cattaaaact aacaatttgc tctagatatt ctaaagcttt attaaaatct
     1921 ttagtgtgta aaaattcata agaaatactt gcatcatcca ttcttccagc actatttata
     1981 agcggagcaa ttaaaaatcc tatattatca agagcaaatt tatccttttg ataataatgc
     2041 ttaatagccc taaaagcagc ccttttagat ttgttaatat gatctatgcc acgccttact
     2101 aaagcacgat ttaaatctct aagttccatc atatctgcaa caattgcaat cgccaaaagt
     2161 tctaaaaatt tacacatgtc atatttaagc ttgcacacct cttttaaagc cgctatcaaa
     2221 taccatgcga cttgagctcc acaaatttca atttctggaa aatcacaatc tttttgcttt
     2281 ggattgataa tggcaaaagc atcaggtaaa acatcttgag gcatatgatg atcagtgata
     2341 atcaaatcta tatttttttc tttacagagt ttggctgctt caagagcagc tattccatta
     2401 tctactgtta ttattaaatt tacatcaagt tcgttgatga tctcagcatt taatccatat
     2461 ccatctttaa aacgatttgg aattcttata atataatcaa aacctatatc atcgaaaaat
     2521 tctgccataa taacacaaga aatgattcca tcaacatcat aatctcctac tatggcgact
     2581 ttctcatttt tttctacagc ttctttgatg cgattagctg ctttatatgc atcctttaaa
     2641 cagcatggca aaggcagatc acaaagtttg gtatgcaaat ctttttcaaa gcgtgaagcc
     2701 aaaatttttt taatttcatt tttattaatt atcttcatag tttatagctg ccttgataaa
     2761 actgcaaatc acaggattaa catgctcaag tcttgatgta aattctggat gaaactgcac
     2821 agccaagaaa aaaggatgac agttaagctc aactgcttca atcaatcctt tgctttcacc
     2881 acttacaatc aaaccgtgtt tttcaaaatc tgctctatat tttggatttg cttcatagcg
     2941 atgacgatgg cgttctttta cactctttac ttcattataa accttagcca aaagggattt
     3001 ttccttgata tcacatttat aagcccctaa acgcatagtt ccacctaaag gagtttttgc
     3061 agtacgaatt tgtttttctc catttgtatc cataaattca tcaatcaaat aaaccacagg
     3121 attttggcat ttttcattaa attcacttga atttgcatct ttaagtttta atacatttct
     3181 agcaaattcc accaaagcaa gctgcatacc taaacaaatt cctaaaaaag gaattttatt
     3241 ttctcttgtg tattgaatgg cttttatctt accttctaca ccacgatatc caaatccccc
     3301 agcaaccaaa attccactca catctttaaa tacttcagaa ctttccatat tttcaagttt
     3361 ttcactatct acccatttta actccacttt agtatctagg gctgcacctg cgtgtataat
     3421 agcttcagta aggcttttat aactttcttt taaatccaca tatttgccta caaaagcgat
     3481 tttaacttca ttgcttggag ctataactct ttttaccaaa gagtcccaat tttccatatt
     3541 aggttttaaa tttttcaaat ccaaaatttc agcaataggg cttaaaatat cttgctttaa
     3601 aaaattaagt ggaatttgat aaatactagc cgcatcaaca ctttctatca cgcaattttt
     3661 ttccaccccg caagaaatag caattttatc ttttaaatct ctatcaagag ctttttcact
     3721 acgacaaata atcatatcag gactaatgcc tatgcgcctt aactcgccta cactatgttg
     3781 agttggcttt gtttttaatt cccctgcagc cttaataaaa ggtactagag taagatgaat
     3841 attcatagca ttatttttac ccacttccaa acgcaaagca cgaatagctt ctaaaaaagg
     3901 caagccttct atatccccaa cagttccgcc tatttcaacg ataagtatat ctttgccttc
     3961 tcctgctttt ttaatgcgat ctttgatttc tcctactata tgagggataa cttgaatggt
     4021 tttgccaaga tattctccac gcctttcttt ttcaatcaca ctttgataaa cccgtcctgt
     4081 agtaaagtta ttatcttgag ataaactctc atccaaaaaa cgctcataat gccccaaatc
     4141 aagatccgtt tctgctccat catcagttac aaaaacctct ccatgctcaa aaggactcat
     4201 agtgcctgga tcgacattga tataaggatc agcttttaaa atactcactt taagccctga
     4261 attttttaaa agtgttgcga tagaagcagc ggctatccct ttacccaaag aacttaaaac
     4321 tccacctgtt acaaaaatat attttgtttg tttcattgat aataagcctt atttttttat
     4381 ctaattatag cttgataaaa ctttttattt cattagaatt ttaagtaaaa aatgcaagaa
     4441 ttacaaaaaa tatttttatc aaaaaaggaa taagcatgca aatcacttta ctttttcaca
     4501 ctccattatc tgtttgttct catgcaacaa gaacttgttg gcaaagcttt gaaaaaggcg
     4561 attgcggtgg cgaaaaagat aaagaactta tcgatcgcgt gggcaacaaa ttcaaacacg
     4621 cttcaacctt agaacatcta aactatactt tttatataca aggaatttca agagcttgct
     4681 tacaagaagt tgcaagacac cgtcacacta gtcctagtgt aaaaagcacg cgttatacct
     4741 taaaagaact tcgcaatgaa gctgaattta aaataggaga ttttgaaaat gcaagccgtt
     4801 atcttgtgct ttgtggcaat gaagaggttg ataacgcaag cattaaagcc ttagaaaatt
     4861 tacgcactat tttacaaaaa agcattagtc tagatatagc caaatactgc ttaccagaaa
     4921 gctataaaac tgaacttaca ctaacgatta atgcaagaag tttgcagaat ttcatttctt
     4981 tgcgtagttc aaaatcagct ctttgggaga ttagaaattt agcaaatgct ttatttgaag
     5041 ccttgccaca agaacacaaa tttatatttg aacattgctt acataaagat atagaataaa
     5101 tcatactaac tttatcttat ttaaaatatt gttatgctac catttataaa atcaagcttt
     5161 acgcaagtat attttcatat accttgtgct tgattatagt ttcttataag gactttttat
     5221 ggataaacaa ttttttcaag attttctaat gctttcacaa gctcatacta tagctactct
     5281 tgctatactt tgtgttgttt tttacgcatt aaaaaaaatg cgggatataa aaatcaattt
     5341 ttctcttcgc atgctatttg cgcttttaat gggtttgggg tttggttttg ctttgcaata
     5401 tttggcaaat tttccagatg ctgaagaagc aagcaatatt ctttggtata gtgaaacaaa
     5461 acattggttt gcatttgtaa gttctgtttt tgtagctttt ataaaaatgc tagttgttcc
     5521 tcttgtaagc atttgcatta taagagtaat tatagaaatt gataaaaata tcaaaatatt
     5581 ctccttgctt ggaataagtc ttttttggat actctttagc acagccatag ctgcaacctt
     5641 gggtatattt ttaggttata gttttgattt aggaagtaat tttgccatac atgaaggaga
     5701 taaacaaatt cgcgaaattc aaactttttc aaatattata ctagggctaa tacctagcaa
     5761 catcattgca gctattaata aagaaaatat tatagctatt gtcatttttt ctttttttat
     5821 aggaattagt gctaaaaaaa tttctaaaaa agaagagtat gaacaagcct ttaaaagttt
     5881 tcataatttt atcctaacct tttataatat tatgatgaac atgactgcta cagtcattag
     5941 atttatgcct tatgctgtag tttgtatgat ggctaatgtg cttttaagca atggttttga
     6001 agctatcaaa acagctggac tttttataat gcttatttat atagctatgt taataatgtt
     6061 cggggtgcat tttttacttc ttgcttcaca agggctaaac cctataaaat atgcaaaaaa
     6121 agcatttcct gtatggttat ttgcatttag ctcaagatct tctttgggca ctttgcctat
     6181 gactacttca actttgcaaa ataaatttgg agttaattca gctatagcta attttgtagc
     6241 atctataggt acaacaacag gacttaatgg ttgtgcggga tattttccag ctttagcggc
     6301 agtttttgta gcttttgcta cacatacaca tattgatttt acatttgctt taatgatagt
     6361 tttggtagct gttattggat ccttgggtat agctggagta cctggaagtg caactatggc
     6421 agcttctatt atgctaacag ggattggatt tggtaataat tttgtcatgc taagtttgat
     6481 tttagctata gatcctatta tagatatggc aagaacagca agcaatgtct caggagctat
     6541 gacttcggca ctttgtactg caaaaaatct aaaagcccta gataaagaaa tttacaattc
     6601 ttaatctttt aaaacccaat gtttttcatt gggttttagt atttattggc aaccttcaca
     6661 ttctatgcta cgatctgcaa cattgacttt ttcactatca gggctttcgc ttcttagata
     6721 ataagtagat tttactccga gctcccaagc gagttgataa atttcattta aatatccccc
     6781 acttgcttta tcaagcgata aaaagatatt taaactctgc ccttgatcga tccatttacc
     6841 acgcacagca gcagccttta caagaatttt ttgatcaagt tcgtaggctg gagtatagta
     6901 ttgccaagta tcaaggctta aatttggcac aacaacaggt atcatgccac ttaaattttg
     6961 ttcaaaccac tttcttttgt aaacaggttc tatagtctgc gtagtaccca ccaaaataga
     7021 aatagaagaa gtaggtgcaa tggccatcaa ataaccattt ctcataccat cttttttaac
     7081 tttttctcta agtttaaccc agtcgcattc actttgatca aataagccct ctcttaaagt
     7141 taaagcttta gccttaggac ttgctacatc aataggaaaa atccccttgc tccaatttga
     7201 tccttcaaaa tcttcataag aacctttttc aagagctaaa tttgaactcg cattaatagc
     7261 ctcaaagcta atttgttcca taatctcatc gattttattt aaatgctcat cgcttcccca
     7321 ataaatctta gcctcagcaa gcatttgtgc ctcacccatg actccaagac ctatggcacg
     7381 agattttaaa tttgtatctt ttacttttct atgaggataa aaatttaaat ctatcacatt
     7441 atcaagcata cgaatagccg ttggcacaac acgctctata tcttctttag tatacacttt
     7501 gctaagattt atacttgcta aattacaaac ggctgttttt ccatcatttt tatatttttc
     7561 cactatataa actttattac catcaatact atctaaagtt gagatttttt tggctggttt
     7621 ttcatatccc ccatcgatca caactttttg ttcttcatca aaatgaagct catctccatt
     7681 ttcaaaaact actttgattt gataataatt tggctcggta ttttgaaaaa tttcagtaca
     7741 taaatttgaa cttctaataa ttcctacatg agcatttgga tttgctctgt tagcactatc
     7801 cttaaaacat aaaaatggca agcctgtttc aaaataattt agcaaaattt tcttccaaag
     7861 ctctttagct tctacgattt ctttggtaat gctttcatct ttttcatatt cttcatagcg
     7921 tttttcaaaa gcttcaccat ataaatcaca caaatccgcc gtatccgcag gatcaaaaag
     7981 agtccattta tcattagctc ttactctctt cataaaaaga tcattgatcc ataaagcagg
     8041 gaaaagttca tgagcacggc gtctttcttc acctgaattt ttacgcaaat caataaaatc
     8101 acttatatcc atgtgccaag gttctatata aacagctata gctccttttc tggttcctag
     8161 ctgatctact gccacggcaa tatcattagt aattttcaag aaaggtataa tccctcctgc
     8221 ggcattttta tgcccatcta tgcttccacc catagcacgc actttagacc aatcccaacc
     8281 tataccgcca ccaaatttag aaagcaaagc catttcttgg taagaatcaa aaataccttc
     8341 aatattatca ggggttgatc ctatataaca agaactaagc tgatggcgcg ttgttcttgc
     8401 attagataaa gtcggagttg caagcatgag ttcaaattta gaaattaaat cataaaattt
     8461 cttcgcccat tcttgaggat taaattcatt ctgcgctaaa aacatcgcaa tggccataaa
     8521 catttgttga ggaagttcta taggcatacc tttactatct ttaatcaagt atctatcata
     8581 taaagtttta ataccaagat aagtaaattg catatcgcgt tcaggtttaa tataagcatt
     8641 taaatcatct aaatcatatt tttctttaag accaagtaag attcttcctt ctttttcgcc
     8701 cttttcaaaa tactcacgca aatgattata gcgattcata ccattaactt ttttatataa
     8761 atcaaataaa aaaagtctag ctgcaacaaa ggtccaattt ggacaatcaa tatctatctt
     8821 atctactgca gttttaatta aagttttttg aatttcttca gttgaaattc catcacgaaa
     8881 ttgaatcttt gcatcgagtt caagttcgct taaattcaca ccttctaaat cttttacagc
     8941 atcagaggtg cattttttga tcttagaaac atccaattct tctgtacgac catttctttt
     9001 aataactttc attgccttcc ttgcttttta tttaaatgtt cttttaaaaa ttacatcaac
     9061 attttttgta tagtagttat aatcgaaaca ttttcttaca tcctcttcgc tcaaactttt
     9121 tcttaaatct tcatcgctta aaagcgctaa caaaaacaaa ctttcatttt tttcattgat
     9181 agcagcctta ccattttgca aatctgccca aactttcata gcgtttcttt gaactatttt
     9241 ataagcttct tcacgactaa tgcctttaaa tggaagctct aaaagcaccc tccctgaaaa
     9301 tacaagccca cctgtaagat ttaaattttt catcatattt tcaggataaa ctaaaagctt
     9361 atcaatcaaa tttgtaagac gcataagcat aaaatcagcc gtgataaaag catcaggcaa
     9421 aataaatctt tcaacactag aatgagatat atctctttca tgccaaagtg caacattttc
     9481 taaagctgga gttacaaaag atctaagcac acgacaaagc cctgtgatat tttcacttaa
     9541 aacaggattt cttttatgtg gcatagctga acttcctttt tgtcctacac taaaatactc
     9601 ttcagcctca taaacttcag ttctttgaaa atgtcttatc gctacagcga tttgctcaca
     9661 acttgaagct aaaattgcaa tagcagaaat aacttgagca taacgatctc tttggatcac
     9721 ttgatttgaa acaggggcag ctttaagacc taaattttta caaacttctt cttcaaattc
     9781 taaaggagca tgagcaaaat ttcccattgc accactgatt tttccatagc ttaccacttc
     9841 ttttgcatgt tctaaaagct cttttgcatg caaaatttca tcataccaaa tagctaacac
     9901 taaaccaaaa gtgataggct ctccatgaat tccatgactt cttcctacca ttaaggtatt
     9961 tttatgctcc aaagcacgct ttttgatcac ttctaaaagc aaagaaacat cttctaaaat
    10021 aagctccaaa ctctctttta tctgtaaagc aacagccgta tctatacaat cagaacttgt
    10081 cattgcataa tgcacaaaac gactctcttc tcccaaactt tcacttacac ttgtaagaaa
    10141 agctataaca tcatgttttg tggttttttc tatttcgtct attcttgcaa tatcaaattt
    10201 tgcattttta agaatttttt cgcagtctgt gtcattaatg agaccgagtt tattccaagc
    10261 ttttacagcg gctaattcta cttttaacca cgcatcgtat tttgcttgca tgtcccattt
    10321 tttagccatg atttctctgc tatatctttc aaccatcttt gaaacctttt tagctataat
    10381 tttatatttt aaaaaacaga aattatatca aattatccta agaaagttat taaatggctt
    10441 acataaaaat aaaactctca aataatggaa aaaaggcatt tcaagtcctt atggaaaatt
    10501 taaaaattag cataaatgaa gcacaaaaac tcatagacaa aaaaagactt ttttgtgatg
    10561 gaattttagt agaagaaaag aatgaaattt taaatggttt agtagagctt atagtctatg
    10621 aaaacaatcc caaaggagta gaaattgtct ttgaaaatga agactttgcc atacttgaaa
    10681 aagaaagtgg gatcttaagt catccaaatg gtagacattg taaatacagt cttagtgatg
    10741 aaatttggca tctttgggga aaagaagctt gcgtagcaca cagacttgat aaagaaacga
    10801 gcggacttat acttgtagcc aaaaataaaa aagctcaaat tgatcttaaa gctttgtttg
    10861 aaaaaaaact ggttcaaaaa gaataccttg ctctagctaa cggaaaaata gaagaaaatt
    10921 ttataattga taaagccata aatttagcca aaaactacga tgatgtaaaa acaaggatgc
    10981 aaatttgtaa ggaaggaaaa caagctatca ctgagtttga aattttagaa tactttccta
    11041 aaatcaacgc tactctttta ctctgcaaac ccttaacagg cagacaacac caaataagag
    11101 tgcatttaca ctataaaaac cataccattt taggcgatcc actttatggg cttagcaaag
    11161 aacaaatcga aagtatttta gatgaaaaat taacccccaa agaacgctta aaacttacag
    11221 gtgccttgcg tttgtgtttg cattcttatc gtttgaaatt tcaatataaa aatcaaaatt
    11281 ttaatatcaa ctcaaaaata aacataaaag aaattttcaa caattctata aaataaaatg
    11341 atgtttcact acgctacaat caatcacttt tttaccaaat tttaaaacaa aaaaataatt
    11401 cttgctaaaa ctttaagtat aattaaataa aaaagcgaga ttttccaaat gaaatttgtt
    11461 aattttatac agggtcaaaa acccaatcta ggagtactaa attctagtgg aaaaattgta
    11521 agttttgatg atcttggcat tgaaactaat gatatgaatg aatttattat ccattttgat
    11581 aaatttaaac acaaacttac agacttggat tctaaaatag cctatgaaat tccacaagaa
    11641 aattatctag cccctattat agaacctcgc caagatatta tatgtcttgg gattaatttt
    11701 ttagatcatg ccaaagaatc tgccaaattt aagggtgaaa aatttgaaga aagagaatat
    11761 cctgtatatt ttggaaaacg ctgcaatcaa gctacggcac cttttggcga tataccttta
    11821 catgcagatg taacttctca gcttgattat gaatgtgagc ttgcatttat tttaagtaaa
    11881 gatgcttata aaatcaaagc taaagatgca aaagattata tctttggcta tactattatc
    11941 aatgaaattt cagctcgcga acttcaaaaa cgccacaaac aattctaccg agcaaaaagt
    12001 cttgaaggta gcactataat gggaccttat atcacaagcg tagatgaaat ttcttatcct
    12061 cctaaactcc aacttcaaag ctatgtcaat ggtgaactac gccaaaactc taacactcaa
    12121 ttgtttattt ttgatattgc ttatgtctta gaagaactta gtgcaggcat gcttttaaaa
    12181 gctggaagta ttatatctat gggaactcct agtggagtag gtatggggtt aaatccacct
    12241 acttttttaa aatcaggaga taaagtacgc tgtgtaatag aaaatttagg agaactttgt
    12301 aataaaataa aaaatatcaa ttattaaata atttactaaa attatactat aatggcattt
    12361 taaaaactta aattaaggca gaaatttatc atgaaaaaaa taataatgat tttatgttta
    12421 tcttatgcaa atatagtctt tgcagtagat atgataaccc ctattccaaa ttccatctct
    12481 tatgataaag aaaaagctaa acttggaaaa agtctttata tggataaaag tttatccaaa
    12541 gatggaaaag tttcgtgcaa tacttgccat aggcttgatc aacacggcgt tgatggactt
    12601 gaattttcaa taggagttga taatcaactc gataaaccct ttaacactcc tacaaccttt
    12661 aattctgtgt ttaattttgt gcaattttgg aatggtagag ctaaagattt agcagaacaa
    12721 gctacagtac cttttttcaa tcctaaagaa atggggctaa gtcctgaact tcttttacaa
    12781 aaagttaatt caaatgaaaa ttatgtaaaa acttttaaaa aactttatgg agaagttacg
    12841 gtagaaaaca taactcttgc aatcgccgaa tttgaaaaaa ccttgatcac tccaaattct
    12901 ccttttgatc gctatcttag cggggatcaa aatgctattt caactcaagc taaaaaaggt
    12961 tacgaagatt ttaaagctaa tggctgcatc tcttgtcatc aaggtcaaaa tataggtggg
    13021 aatatgtttc aaaaaatcgg tatttttgaa gaatacccaa accaagaaga tttagggcgc
    13081 tatgaaatca caaaaagaga agctgataaa atggtattta aagttcctag tcttagaaat
    13141 atagccaaaa ccgcacctta ttttcatgat ggatctatac ctactttaga tgcttgtgtt
    13201 caatttatgg cttactatca actaggaaaa tttttagatc aagaaacagt tgacaatata
    13261 gttgcattct tagaaagctt aacaggagaa tatcatgaca aataaaaaaa gttcattttt
    13321 gataaaattt attatcttat ctacactagt tttgactttc attcttgttt tattggctat
    13381 tatttttaat aactattctt catctaaaaa taacaaagac ttgataaaca tagttcagca
    13441 actagaaatt tcagatgaaa aaatcaattc tatttttcaa aatagtttta attttatcaa
    13501 ctacgatcca agtgtgcaag cgataaaaaa aatgcaagaa aactttacaa aacttaaaac
    13561 ttttgggatt gacataaaca aagcagaaga aatttttaat gccaaactaa tccagcttaa
    13621 ttattttaaa tccgcaaatt ccatagcagt aaattcaaaa ctttatttat ttgaactagc
    13681 taaaaattat tttgaagaat tggaacaaaa ccatgaaaca aataaaaaca actataaaac
    13741 aatgagttct atgttaagcg ttctttcaac tgaaaatatt ttacaaaaaa caacactaaa
    13801 tcaactcaac aatcttatga aagaaatcaa aaatgataca aaaagtgaaa atttacaact
    13861 ttttttaaaa cactataaaa tgattgtaaa gcaaatttct attatgcaag ataattcttc
    13921 tatttatgag aataattctc tcatgaaaga gttaaaacaa cttaacactt ttacccaaaa
    13981 tactatagaa caatctaatt tatttaaatt ttatatcgct ttagcagtat ttggaattac
    14041 tcttgtatta tttgtatttt ttattttatt aacactaaaa aaagtcatca tgccaattca
    14101 tactttagaa aaactaagcg ctaatttagc tagcaaagaa gccaatctac actctcgttt
    14161 aaatatagat ccaaaaagtg agcttggaca aagtgctcaa tatattaatt catttatttc
    14221 caccgttcaa aactcaatca tagaagccat agaaaatgct aaatcaagtc atcaaaattc
    14281 acaaaaactc aaaaacaact ctatgatgct tgaaaacagc tctaattcgc aacatgaaca
    14341 aattcaagga gttaaagaaa tcactcatgt tttagatgat catatcaatc ttgcgggaaa
    14401 tttagcacaa gaaagtatag aaaatatgca agatatgcac atactaatgg ataaagtaga
    14461 acttactcta tctgaacttg taaatttaat aaatgaaaac aatgaaaaag aacaaaatat
    14521 agtagccaat atggacaatc taacccaaag tgcggataat attatagaaa tcacaaactc
    14581 cattaaagac atagctgatc aaactaattt acttgcccta aatgcagcta tcgaagctgc
    14641 aagagcaggc gaacatgggc gtggatttgc tgttgtagcc gatgaagttg gacagcttgc
    14701 tgataaaaca agtaaatctc ttttaaacat caatgctact gttaatacta tagtccaaca
    14761 aatcaatgac aacaaagcct taatggatct tatccatgat tctatgaaag aaacctcttc
    14821 aaaaaccaat gatttacaac aagaacttgt aaattctatg cataaattgg aaagctctat
    14881 agaatcaacc caaaccatga aagataaaag catggaagta aaagataaaa tgcttatctt
    14941 aggaacaaat atagataaag ttaacgaact tgcaaattct gttaaagatt tatcatgtga
    15001 aatcaataat atctctcaaa atgttctaaa tggtgcctct aaactctccg aaaaattaag
    15061 tagctttcag taactttttt cacgttaatt taacttaacg tgaaatttca ataaaaattt
    15121 atttttaatt tatgtttttc aagtaaaatt agcagttttt atttcaaagg agatactatg
    15181 gagtttcttg aacttttatt agttttaatc gccttgatac tgattatcaa aaaaccagaa
    15241 aaagaaaatt tggcttttgg tttggtaatg gtagcttggc ttttaatggt ttttttctat
    15301 gttggccaca aaacaggcgc actattaaca ataatgaatc tgtaaggaag ggctaaatga
    15361 acgaaatcaa taaaacaaaa aatttctaca cactaatgtg tttagcaggc tttttgatta
    15421 tactcttgcc tgtaggtatt gcaaatttga tatttggtta tatgttgggc gatagtcctt
    15481 gcacgctttg ctggggacaa agagaagcaa tgatctttat cggtgtaatg gcgcttttca
    15541 ttgttcgtta tggtatgaaa ggtaaatacc ttgctgctct tttaatcatg acagcagtag
    15601 ggctttatca atcttttgct cactatggta atcacgctca tagagattta gatcaaggtt
    15661 ttggtttagc agtttttggt atccatactt atttttgggc tgaagtagta ttttgggctg
    15721 ttgtattgct cttaggtgtg atttttgctt ttgctcctaa atttaatgct tttgaagctg
    15781 aactaaatgg agaaaagttt agaaaatata ctaaatttag ctttgcagca gttttaatca
    15841 gtgctatcat cgtagcatca aatgttttcc aagcctttgt tagcacaggt gttcctcctt
    15901 atgtaggaca aggcgatcct gtaagattta gtttaaatcc aaaatacatc atttggagta
    15961 aagaaggttg gaatggttta tggcaaaata tttctttctt aggaaaacgc gatgttaaag
    16021 ctcctgatta tgcttttgca cctgcaagtg aaaaacttgg cataaaattt gataatgata
    16081 tcaacaatgc tccatttgca aaaatcaatg atgagcttaa aatcacaaat gaacaaacca
    16141 taaattttga caaagccatc aatactcttg attatatcaa taacgaattt gtagcaagtt
    16201 ctaaatggga tgtagctttc ttagataata attttagcgt taaagaaggt tttgaacttg
    16261 atccttattt ttcagcttct atcgatccaa tcatcggtat cataccttat atgaacgata
    16321 aattcattct tatgggctca aacaaatctt tcttaagatt tgcaaaaaat cctaatgcaa
    16381 gtgaagaaga tatcgctaaa caatacgctg actttgtaaa aggcaatgat aaatttaaag
    16441 gtcaaggcga aagtttaggt cgcggaagac ttgataccgt aagagcaaaa tttaaccatg
    16501 tagcaagtat gactacagat ggaaattatc tttatcttgc aactgttcca aacaacaaag
    16561 acgctaaaac ttttgtaatc tctaaagttt ctttaaaaga tcgtgttctt tcaggagaat
    16621 ttactccaaa agcaaatctt aaagaaggta aaactttagg cgatctttat gtaacttcta
    16681 tgacttttaa agatggggaa atttatgcac ttagcaaaaa tcacaatgtg attgccgtaa
    16741 ttgatccagt caaagaagaa gtagtgaaaa ctatcgcttt cccaagctct atcactaatg
    16801 ctagaagcat tttctttaaa gatggaaaaa tcaatattct ttcttatcaa gatggagcaa
    16861 acaagcttta tactttaaac taagctttaa gtcctagtga aaactaggac ttatatttaa
    16921 tcttatcttt aaatcctgct ttttcaaaac ctcttaaacg aagcaaacaa ctatcgcact
    16981 ccccacaagc ttcatcttca ctctcataac aagaccaggt aagttctaaa ggtacatttt
    17041 cttttaaggc tagttctaca attttagctt tgtttagtct aacaagcgga gtttttatac
    17101 aaactttgaa attcttactc gtaccttcat tgataaattc ttgtgccttt tgtataaact
    17161 catcagtaca gtcaggataa ccactgccat cttcttctac cacccctata aaaacactct
    17221 cacaattttc cttttcagcc aaagatcctg ctatacttaa gaaaattcca ttgcgaaaag
    17281 gcacataagt gataggtgga gtatcgcttg tacaaagctc atttttaggg atgtctatac
    17341 ttttatcggt taaggcattg ccccctatat ctttgataaa actcacatct aaaatataag
    17401 atttttctac ttttaaagcc ttgcaaattt gcttaaaaca ttctttttct ttttcttgag
    17461 tgcgttgttc atagtcaaaa tgcaaagcga taatttcata accttctttt ttggccagat
    17521 aagcacacaa agtactatcc ataccgccac ttatgataca aagtgctttt ttactcattt
    17581 ttatccttaa atttgctata atttcacaat tttaacgaaa atttttaaat ttaaattgca
    17641 aaaaggcaaa agcatgataa acataaaact catagaacac atttttaaag ccgcttctat
    17701 cagtcgttgg aatgattatc caagaatggc aaatttggtt gaacttgaca aacaagctca
    17761 taaattcatc atcgcatatt ttatcgctaa aatggaaaaa gatgtggata tgagagtgat
    17821 tatagaaggg ggaatttttg agtttttaag tcgtgttgtg gtaactgata tacgccctga
    17881 tgtgtatcat gaaatcgtgc gtcaaaaaaa agctgaagtt aatgcttggg ttttaagcaa
    17941 aatcgaacct atgatagaag atatagaaga tggggaattt ctaaagcgtt ttgaagcgta
    18001 tttaaatggt aatgcttatg ctaaagaaag acttatctta aaagcagctt catattttgc
    18061 tacaagatgg gaatttaaca tagtttatca aacctcagct tttttaaatg atattgatga
    18121 gattaaaaac aaagttgaag aagaattaga agattactat gagcttatag gagctagaaa
    18181 aatcgcttta aatcaaaaaa tagccaaaat tattgatctt agcggaagac ttcgctttca
    18241 aaaacgttgg gctcaaactc cacgcatacc agaaaccgcg gttttaggac atatgcttgt
    18301 ggtggcgatt ttaggatatt tttactcgct aaaaatcaag gcttgcgata aaagacttga
    18361 gaataatttt tattgtgctt tgtttcatga tttgccagag tctttaacac gtgatattat
    18421 cagccctgta aaatacggca ttgatggact tcatgatatc ataaatgatt atgaaatgaa
    18481 acttattaat gaaagaattt taccctttgt acctgagggt ttaagggctg agttttctta
    18541 tattttaggc attagagaag gtagaaacgg tgagtcaaat tttgtaaaaa atgagtttga
    18601 aaatcgcact tataaaaatg ctaaaatcga gctttgcagc ggaagtttaa gctcttttaa
    18661 tgaaaatgaa tttggtgcta tagatggtaa ggcgcttaaa tactgcgata aaattgctgc
    18721 ttatatagaa gcaggactta gtataagtta tggtgtaaag tctaaagaac ttgaaagtgg
    18781 ttttttagga atgcatgagt tttttaaaga aaatcctacc atagatgggg tgaatttttt
    18841 tgaaatttgc gaaagtttaa gagaatattt taaaatttaa ataagatttt tatactccta
    18901 ttttcaatat gttttaaata aaaatattat aaattcaaat tttattttgt ataaaacata
    18961 aaggagttat tatgaaaaaa tactttcaaa agcgctatac tttagccttt tttataggta
    19021 tattagcggg tattttcgga gctattgtta aatggggttg ggaagtacct tttcctccaa
    19081 gaaatcccaa tgttttttgg ccagcagatg ctttagaacg tgttactcca cctaaaattt
    19141 ttctagaaca actaggctta cctactgatt ggacttatat gttttcaggt atgcaaatgc
    19201 ctttgtcaat ttttatagta catgtcggtt tttctattat ttttggagtg gcttattgta
    19261 tgatagcgga aaaatggcac cgtattacta tgtggcaagg tgcagttttt ggattttttg
    19321 tttatctttt tgcccatgtt attataatgc ctttaattgc agaagttcca ccactttctg
    19381 aaattccttt tgatgaacac ctgtctgaaa tttttggcca tattgtttgg ctgtggggca
    19441 tggaaatagt tcgtagagat ataagaaatc gtataaccaa agaaatagaa gaatgaaagg
    19501 aagcctttca ttccatatct aaaaccgcac ctttactagc attgctaaca agtttttgat
    19561 acattctaag ccatcttgaa gacacctctt tttgaggcaa tgcaaattct tttttacgtt
    19621 tagcaatttc ttcttcactt acatttgcat ggatagtata agcatctaca tcaatttcta
    19681 tttcatctcc atcttttaaa agtcctataa gaccaccttc agctgcttca ggggaaatat
    19741 gaccgacgct taaacccctt gtagccccac taaaacgacc atcggtgatt aaagctacat
    19801 cagcacctaa acccataccc attaaaagtg aagtaggact taacatttct tgcataccag
    19861 gacccccttt tggaccttca tagcgtatta cacaaacatt tcctttttgc accttgcctt
    19921 taataatgcc ttttatagct tcatcttgag agttaaaaca aacagctttg cctttaaatt
    19981 ttctttctcc gattattcct gcggttttta taacacaacc ttgcttggct aaatttccaa
    20041 acaaaatggc aagcccacct acttttgagt aagcattatc tactttacga atgatatttt
    20101 catctttgat tttggcattt tttaagcgtt ctttgagact ttctcctgta atggtcagtg
    20161 catcaagttc taaaatatgt ccttgtctgc ttgaaatttc agccataact gcactcacac
    20221 cgcctgcttt gtggatatca tccatataaa cactatttag cgatggggct atttttgcta
    20281 tgtgtgcaac tttgcttgag atgaaattta aatctttaat atctagtgct acccctgctt
    20341 cacgcgaaat ggcaagcatg tgtaaaactg tattgctact tccacccatt gccatatcta
    20401 ctaccatagc attacgcaca gctttttgag tgatgatatt acgaatttta aaacgttcat
    20461 ctagggcgat ttcacaaata cgacgcgctg cttttcttaa aagctcttct ctttctttac
    20521 ttaaagctaa aatggttcca ttgccttcta gtgctatacc catagcttcg cataaggtat
    20581 tcatagaatt tgctgtaaac attcccgaac aagatccacc acttggacag gctgaacatt
    20641 ctatatcttt aaattcttct tcactaattt ttttggattc ataagcccct acagcttcaa
    20701 aaacagagct aaggctgatc ttttctcctt ttttggttac tcctgaagcc ataggcccac
    20761 cacttacaaa aatggttgga acattgaccc ttaaagctcc cattaacata ccaggagtaa
    20821 ttttatcgca gtttggaata cagattaaag catcaagttg atgagcattc atcaccgttt
    20881 caatagaatt tgcgataagt tcacgacttg gtaaagaata aagcatacct tcatgtccca
    20941 tagctatacc atcatctacg cctatggtat taaactcaaa aggtacgcaa ccatttttgc
    21001 gtatctcatc tttaatgatt ttagcataat catttaaaaa ataatgccct gggattatat
    21061 ctatatagct atttgctaca cctataaaag gtttgtcaaa atcttcatct ttcaaaccac
    21121 aagcacgaag taaagaacga ttaggtgctc ttaaatgtcc tttttttatc gcatcgcttc
    21181 tcattgtaac tcctgataat aattttttaa aattatattt agcaaagctt aatttttgtg
    21241 aaatttattt tgatatacat tttcataaat gataaaaatt attaattgac aaaaatattt
    21301 ttttataata caatactttt tgataatcaa aaaaggagtc aaaatgagac aatatgaaac
    21361 ctataaatgc caaaaatgtg gtaatgaagt agaagttcaa aatgtaggtg gaggtaagct
    21421 tagttgttgt ggtgaagaaa tgaaatgtat cactacagat ttaactgcag taaatttgat
    21481 gaaagctttt gcgggcgaat ctatggcgag aaacaaatac gatttatttg ctgatgtagc
    21541 tgaagaagaa ggttggcatg cggttgctag acattttaga gaagcagctg aaaatgaaaa
    21601 atggcatgca agagcagaat ttaaagctta tcatgaaatc gttgatggaa aacctttaga
    21661 agtaactaca aaaaacctag taagtgctgc agaaggtgaa aactatgagc acacaactat
    21721 gtatccaaat tttgcaaaaa ttgctgaaga tgaaggtaaa aaggctatag caagattatt
    21781 tacagctatt ggtaaagtag aaatcgaaca cgaaagagaa tatctagcac ttaaaaaaat
    21841 gcttgaagaa gaagaatttt ttaatagcga agtagaagaa ttatgggttt gtgaagtatg
    21901 cggacatata catcgtggca aaaaagctcc agcagcctgt cctttatgta aagcaccaaa
    21961 agagtatttt aaacgcgaat ttttgggtta agttaagaaa ttcttatcct ttttaagata
    22021 atattataat tattttttaa taaaaggata agaaaatgaa aaaattacta tttttatttt
    22081 ttgctttaac ggcttttctc tttggtgctg taaatatcaa cactgcaacg ctaaaagaat
    22141 taaaaagttt aaatggtatt ggcgaagcta aggctaaagc gattttagaa taccgtaaag
    22201 aagcaaattt tacaagtatt gatgatctta aaaaagttaa aggcataggt gataagcttt
    22261 ttgaaaaaat caaaaatgat atcacagtag aataaaaggg catttttgcc cttcttttta
    22321 gaaaaatttg aaaactttat ttgacacaaa agaactttta aacgaatttg atataaattt
    22381 aatcggtatt gatgaagcag gacgcggtgc tttagcaggt cctatgatga tggcagcttg
    22441 caaactgaac aaacaacttg atgggttgtg tgattctaaa aaactaagcg aaaaaaaacg
    22501 cgaagaactt tatgaaatca tcatcaaaaa ttcaaactat ctcatacttg ctttttcttc
    22561 ggaacaaatc gacgcactag gcttaagcac ttgtttaaaa aaaggcttaa aacttataaa
    22621 aaagcatttt aaaacagaaa ataacttctt atatgatgga aacaccaacc taggtataaa
    22681 cgggataaaa acacaaatca aagccgacac tagcattttg caagtaagtg cagctagcat
    22741 acttgcaaaa gttagtaaag atagggtgat gaatttctta gctaaagact ttccttgtta
    22801 tgaatttgaa aaaaacaaag cctatggcac aaaagctcat aaagaattta tagctaaatt
    22861 tggaatttgc aaactccacc gaaaaagttt taaactttta tgattatttt gctaaatttt
    22921 gatgcaaact caaagcacat tctataccat cttttatagc ccaaacaact aaagattgtc
    22981 cttttctagc atctccacaa gcaaagattt ttttatgagt ggtttggaaa ttttctgtgc
    23041 ttatgttgtt tttctcatct aatttcactc caaaattttt agagatagct tcttcgcacc
    23101 cgctaaaacc catagctaaa agcactaaat ccgctttata agttttttta gaatttgaaa
    23161 tttcgacatt tatagctttg ccttctttaa actcgcgttt taaatcattt gcttcaacac
    23221 cttctacatg agtttttcct aaaaatttct ttgtcatttt ttgatattcc ctaggatctt
    23281 tgccatatac agcaatggct tcttctaaac cataatcagt agtaaaaatg tcagctttta
    23341 aaggccaagg attgttttgg cttctttgca aaggtctttt tggacttctt tcaaaacgca
    23401 ctatagattt agccccttgt cttgtcgcta cagcgataca atccacactt gtatccccgc
    23461 ttcctataac caagacattt ttacctttgg ccgtatctgc acccttgcct gtttttaaca
    23521 aagttttggt attttgcgtt aaaaaatcaa gggcaaattc aacccctttt agctttctac
    23581 cttctatatc aagatctata ggcttacttg ctcctgtaca aagcaccaaa gcatcaaatt
    23641 cttttagaag ttttgaaacc ttatctttgc tgtctatatt ttcattcact ttaaattcaa
    23701 tcccactttt tttaagcaaa tccacccgtc tttgaactat acttttatca agcttcatat
    23761 cagggatgcc atacatcaaa agtccgccta ttttatcgct tctttcaaaa acacttactt
    23821 tataacctag tgaatttaaa gtgttagcac aagcaagccc agcaggccca cttcctatga
    23881 tagcgatttt tttgccattg tattgcttag gtttatttac tcttactaaa ttttccttaa
    23941 aagcattttc tataatggat aattcattat tttttatact cacactaaca ccatttatcg
    24001 cacacacaca agaatcctca caaggagcag ggcaaacacg accggtaaat tcaggaaaag
    24061 gattggtaag atcaagtctt tcataagctt cttcccataa agaacgataa ataagatcgt
    24121 tccattcagg aatgagattg tttaaaggac agcccacatc ttttccttcg ctcatcacac
    24181 ccgtatgaca aaaggctacc ccacaatcca tacatcgtcc accttgaatt tcttgttctt
    24241 ttttatccaa aggtatagta aattctttga aatttaaaac cctttcctta ggagcaattt
    24301 ttttaaaatc cattctttta aagtctaaaa aacctcttgc atttcccatt ttttactcct
    24361 tatttttgtg tgattttcaa aaatgctgct aaatttggat ctttttcatt tttacaaaga
    24421 tcaagcattt ttaacatctt ttcataatct cttggcatga ctttaaaaaa gtctttttta
    24481 tcgaattttt ctaaaatatc tttagccttt ttagaatctg tataagcgat atgtttttct
    24541 atcacggctt ttaattcttt ttcatcctta gcattaagat ctttaatatc cacaagctcg
    24601 gtatttacat gagcttcatt gtgtcttcca aagatataaa caacgccccc actcatacca
    24661 gcagcgaaat tcgcacccac atctccaaga actacaactt gcccacctgt catatattca
    24721 cagccatgca cacctgttcc taaaaccaca gctaaagccc ctgaatttct tacacaaaat
    24781 ctttcccctg ctataccatc taaatacact tcaccttttg tagctccgta taaacaagca
    24841 tttcctgcga tgatattttc ttcaggtgaa aaagtggctt catttgaaat ttttgctatg
    24901 attttaccac cacttaaacc cttgcctaaa taatcattgc tatcacctat aatctcaagt
    24961 ttaataccct ttaacaaaaa cgctccaaag ctattgcctg cattgcctat agctttgata
    25021 tggatactat cttcatctaa agcgtctttt ccataagttt ttaaaatttc acttgaaagc
    25081 atagtcgcaa aagtacggct ttgatttcct acttctaaag aaagtttgat aggttctttt
    25141 ttctccacag catttttaca aagtggaagt aaaattctat aatcaatcgt tttttcaagc
    25201 ttgttatctt tatagtcttt aaaatgcaca gcggttctat tataagtagg caaggatttt
    25261 aaaattttat ccaaatttag ctttcctgct ttaccttgca cacttttttg acggagttta
    25321 tccacgcgac ctatcatatc atctaggcgt tcaaaaccaa gtcttgccat gtattctcta
    25381 agctcctcag ctataaaata catgaaatta atcacatcat ctactttgcc cttaaaacga
    25441 tctctaagtt ctgtatcttg agtagctata ccaaaaggac aggtatttag atgacaaact
    25501 ctcatcatcg tacaacctaa aacaatcaaa ggcgcggttg caaaaccaaa ttcttcagct
    25561 cctaaaagtg ccgctatggc taaatcacgc ccattcataa gctttccatc agtttctaat
    25621 cttaccctat ctctaagctt atttaaaatc aaagtttgat gtgtttcagc caaacctaac
    25681 tcccaaggaa ttcccgcatg cggtatagaa gttctaggac ttgcacctgt acctccatca
    25741 taacctgaaa caaggattaa attcgctcct gccttagcca cacctgcagc aaccgttcct
    25801 atgccatttt cgcttacaag ttttactgaa attttagcgt ctttgttagc attttttagg
    25861 tcataaataa gttgagccaa atcttctata gaataaatat catgatgagg aggtggggaa
    25921 ataagcgtca cacctgcagt agaatgtcta gccttagcta tccaaggata gactttaaag
    25981 cccattaatt gtccgccttc acctggtttt gcgccttgag cgactttgat ttgaatttct
    26041 tttgcatgac ttaagtagtt tagatccacg ccaaaacgcc cacttgctac ttgcttaatg
    26101 gctgagtttt tatccacacc ctctttgatt tcatagcgtt cttcatcctc gccaccttca
    26161 cctgaatttg atttagcacc tattttattc atagcctgtg ccaaacactc gtgtgcttct
    26221 ttagaaatag aaccataact catcgcccct gttctaaagc gtttaactat actttctaca
    26281 ctttcaacct tatctatact gatagcttca ctaaaatcaa attccatcaa agaacgcaaa
    26341 ttaacttgtt tttcatctac taaagccgag tattttttaa agcttttata gtctttgttg
    26401 cgacaggctt gctgaagatt aaaaatcaca agtggatcaa ttaaatgttc ttctttagca
    26461 cttctaaaac catgaattcc tttagaatct aaagccttat gcgtatcgtt aaaagcatgt
    26521 ttgtgtaaag caataagttc tttttcaaaa tcttctaaat ccataccttc gatgcgtgaa
    26581 gttgtagaag tgaagtattt atcaatcacc ttagagctta agcccagaca ttcaaaaagt
    26641 gcagagccat tataactttg caaggtagaa actcccattt tagaagcaat tttgactatg
    26701 ccacttgaac ttgccttgat gaaattttct accgcctttt cataacttaa atttaaatct
    26761 ttattggcaa tgagtttttg tatgctctca taaaccaaat aaggattaat aacagtcgca
    26821 ccataaccta aaagacatgc aaaatgatga atttctctag gttcaccact ttcgatgata
    26881 agacttgtat gtgttcttaa attttttctt actagatgat tatgcactcc agaaacagca
    26941 agcaaagcag ggatataagc gtttttttca tccactcctt tatcgcttaa aatgataata
    27001 gaaacacctt ttttaacctc atcttctatc ttaacgcaaa gttcatctaa agccttttct
    27061 aaagtttttt tagaataatc ataaagtata gaaaattctt taacttgaaa tttatttaaa
    27121 gccttaactt caaaaagttc ttcattgctt atcacaggca aagctatttt tacgcgtttt
    27181 gcattgtttt catcgggttt taataaattg ccttcgcttc ctagataaat ccttgtagaa
    27241 gtaacgatct cttctcttat ggcatcaaga ggaggattag ttacttgtgc aaaaagttgt
    27301 ttaaaataat tatacaaagg ttgataagtt ttagaaagta tagccaaagg agtatctaca
    27361 cccatagctg ctatagcttc tttaccattt tgagccatag cagccacact cattttaagt
    27421 tcatcataac tccaaccaaa agctttttgg agttttaaaa cctcatcttc ttttaaaaac
    27481 tgatgtttat aaactccgct tttttgtttt tcaagttcaa ctaaattttt aagccatttt
    27541 ttataaggct tagcattagc ataatgctct ttgatttcat tatcagctat aaccctacct
    27601 cttgctgtat caacgagtaa aagttttcca ggttctaagc gttttttggc tttgatattt
    27661 ttttcatcaa gttttaaagc ccctgtttca cttgaaagta tgagcatatc atcttttgta
    27721 agataatacc ttgaaggacg aaaaccattt ctatccaaac tcgcccccat aatcactcca
    27781 tcagtaaaaa ctatagcagc aggcccatcc caaggctcca tcaataaaga atgatattca
    27841 taaaaagcac gctttttgct ttccatattt tcatttttat gccaaggttc tggcaccatc
    27901 atcataaaag cttcttctaa agtacgacca tttagagcta aaaattctaa agtattatca
    27961 aacattgcag aatcactgct aggcttagct atgataggaa aaatttcatc taaattttca
    28021 aaatactcac tttgcatcaa gccttctcta gctcttatgc tatcaacatt tccgcgtatg
    28081 gtattaatct ctccattatg caccatataa cggtttggat gggctctttc ccaacttggg
    28141 aaggtattag tcgaaaagcg agaatgcacc aaagcgatgg ctgatttcat attgacatct
    28201 ttaaaatcaa gataaaaatc gctcaattga gttgaaagaa gcattccttt ataaactatg
    28261 gtgcgtgaag aaaaacttga aaaataaaat tttggcacat taatagctct tttttctata
    28321 aggcgacgcg tactataaag cactctttca aactcaagtc ctgcacttat tttacttggt
    28381 tttttcacaa aggcttgtaa aaaataaggc atagctttta aagcacttgc acctatatcg
    28441 ctaggattaa aaggcacttc tctaaaacct aaaaattcaa gttttttatc ctttaaacct
    28501 tgtaaaaata tctcttttgc ttcttctttt gcatcagtat tgggtgataa aaacatctgt
    28561 gctacggcat aatcaccctt tttaggaagt tcaaaaccca attcttgagt tttaaaaaaa
    28621 tcatgtggaa tttggatcaa aatccccgcc ccatcacctg aattttcttc agctcctgca
    28681 ccacctcggt gttcaagatt catcaaaatt tctaaagcat cacaaataac cttataagag
    28741 gcaataccgc gtatattagc aactgcagcg ataccacagg catcgtgttc gttctttggg
    28801 tgatataaac ctatgctttg attattttct aggatatttt ctaaatccat tttgctctcc
    28861 ttaataagac tgatttaaat tttgttagct ttataaggat tatagcatac atttttttaa
    28921 aatcgatata atttttatct taaaaataaa taaattaaaa aatattttga tagatttgta
    28981 aaaattataa aaacatggcg ataatactac ctaaaatcaa taatgggcca ttatagaaaa
    29041 taaaagttgg tatgcaagta tctttaatgt gatcgtgttg tttatcagca tttaatccta
    29101 cagtagttcc catggttgtt tcactagctg gacttcctgc atctcctaaa gctcctgcta
    29161 ctcctaagat aaatataata agtgctgtac taaaaccaag ttccaaacaa ataggacaaa
    29221 aaagcgtagc tatgataggt atagttccaa aagaagtacc tatacccata gtgatgataa
    29281 gtcctattaa aagcatgaaa aatactgcta aaaatttact ttgctccatc caaggaacga
    29341 ctgaatttac aagatctact actgatccac tttcttttaa aacttctcca tatcctgcag
    29401 caacaaggat aacaaaagct ataaaaccca tcattttaag cccatcatca aaaacttcat
    29461 tgacttttga aaattcaact ccacccaaaa taaccattaa aacaaaaccc aaaagccctg
    29521 ataaaggcaa attcatagtc aaaatttgca aaattaaagt taaaacaagc ccagctaaaa
    29581 cgccccattc cttacgcgtc atttcaagat tttctaaatc cactttagca atttctattt
    29641 cttgatactc tcttggctta cgataaaaca caaaaagcgc tagaaaaagt cctgctatca
    29701 tacaaatagc agcaaaatac atagtatttg taacatcatt taaagataca cttacattat
    29761 ttgcatttaa attatctttt aaaagatctt gaaaagtaag cccaaaacct actggcaaaa
    29821 ccatataagg cgtagtaagg ccaaaagtta aagcacaagc aaccgctcta cgatcaattt
    29881 taagtttatt aaaaagactt aaaagaggtg gaatcaacaa aggtataaaa gctacatgaa
    29941 taggaattaa attttgagaa aaacaagaaa tcaaagctat agacaaaagc aataaatatt
    30001 ttttatgaga tataaaatga cttactatct tgatcaaata tgcagttaaa tttgtctttg
    30061 aaatcgctgc agcaatggct cctaagagta tatagctaag agctgttttt aaattttctt
    30121 tcattccgct tataagtata ttcatagtat ctacgagttc aagatgagaa aatacacctg
    30181 caacaagagc tgagatcaaa agactcaaaa gcacattaaa acgaaacaaa caaagtaaag
    30241 tcatcaaaac aacactgata atgataggat tagtaagtaa agtcaaaatc attccttaaa
    30301 taattttaaa aatttaattg tagaaaaaac ttagttaaaa tgtaataaaa ctcgaacata
    30361 taatgatttt attttaatat gcaaaattat aaaaataatt aattttttta atcaaaaaga
    30421 ttaatataat caattattta aattcctaaa atttataata aaataaaaaa atcataaaaa
    30481 tataaggata tttcaatgaa acaaaacaat caaaaagaag atcgcagaga tttcttaaaa
    30541 aatataggat ttggtttgct tggtatcagc gtattgtcaa atttttcttt tgagaatttt
    30601 ttaggaagta aggctttggc aaaagaattg cctgatttta aaatagaagg taaaaaagat
    30661 cttatctatc atggtgaaaa accattaaca gcagaaactg aaatttatgc tcttgattct
    30721 gattttacta aacctgaaaa tttctttgtt agaaataatg gcttaccacc aagcctagaa
    30781 acgataaaag aaagacttca taaaggttgg actttagaaa tcgatggaga aagcattatc
    30841 aataaaaaat cttacaccat agaagattta aaaaagaaat ttaaaaccta tacttatgcc
    30901 ttaacagttg aatgcggtgg aaatggtaga tccgaagtta tacctagcac aaaaggaact
    30961 caatggggtt atggtgcagt agcttgcggt agatggacag gagtgcgttt aaaagatatt
    31021 ttaaaagatt gtggcatcaa aaatgatgcg gtttatatcg gatattatgg catagataca
    31081 aaattaaatg gtgaagaaac ttcacctatt agtagaggag ttcctatttc taaagcttta
    31141 caagatgaaa ctctaatagc ttgggcttat gaaggcaaag atattccttt agtcaatggc
    31201 tatccactta gacttgtttg tggtggttac cctgcaagta caagcggtaa atggctttat
    31261 aaaatttcag taagaaataa aattcacgat ggtgaaaaaa tggaaggttc ttataaagtt
    31321 cctgtaaatc cggtaaaacc aggagatttt aactataaag gcgagatgaa aatcatagaa
    31381 tcaatgccta taagatctgt aattactaat atcaaaaatg gttctgaaat aaaagcaaat
    31441 aaaaaatttg aagttagagg taaagcttgg gctggagaac ttgaagttag tgaagtttat
    31501 gtaagcaatg attatggcgt aacatggact aaagcaaagg tagaaaaacc attaaataga
    31561 ttagcatggc aaaaatggag tgctcaaata tcaataccaa caaaaggata ttatgaaatt
    31621 tgggcaagag ctatcgatag tcaaggtaac agtcaaccta tggttttagc acagtggaat
    31681 ccaggaggat atatcaataa tgcatgccat agagttaatg tttatggagt ttaagtatga
    31741 aaaaaattat attgatctta gcattgtttt tgagtgcaag ttgggctcaa aatcttgaaa
    31801 ttaaccctga tacaggattg attatcgatc ctgattcacc gttagtggaa gcaaattgtt
    31861 tagcttgtca tggatccaat ctcattacca atatgcatgc aagtagaaaa gcttggttag
    31921 cagctataag atggatgcaa gatagtgaag gactttggga aatagaacct gaagatgaag
    31981 aaaaaatttt aaattatctt gaaaaatatt atggagaaaa atacgataca agaagaagaa
    32041 ttcctctagc tatactctta caaaacaaaa ctcattgaag aaatcatttc ttcaatgata
    32101 aatttacaca tctaaatgct ttacatcttt agcgtgtgct tggatataat cgcgtcttgg
    32161 ttcaacctca tcacccataa agagattaaa ggtatcattt gcactttgtg catcttcaat
    32221 agtgattttt aaaagtcttc ttacgcttgg atccattgta gtttcccaaa gttgctcagg
    32281 attcatttcc cctaaacctt tatagcgttg tatagtagca ccttttttag cattggtttc
    32341 aacatcttca agaacttcta aaatatcttt atcaaattcc aagcctctat ctttaatctt
    32401 atcaaaaata taacttgctt cttcatatag tggatgagtg aaaagttctt cattgatcac
    32461 aagttcttct aagccatttt gagtttgaac gaaagctcga atttcatttt cattgatata
    32521 atgatttaag atattgtgtc cttgtgtttc taaaaattgt ttgattacac taaataattc
    32581 ttcattattt cctttaacta aatttgaatt ttctatcata tagcgtatca cagaaatcac
    32641 attaaaacgc ttttcaagat cttttaaaat cgcacgataa gctgcaacga tttttaaata
    32701 atcttttaaa tcattcattc ctataccttc atagtttaaa ccttctattc ccgtttctat
    32761 caggtattcg ctcaaagctt tttcatcttt taaataaatt tgctttttag cttttttata
    32821 aagatataaa ggtggttgtg ctaaataaat atgtccattt gccacaagtt cattcataaa
    32881 acggaagaag aaagttaaaa gcaaggtttg tatatgagat ccatcaacat ccgcatctgt
    32941 catgatgatg attttatgat atctaagttt tgaaagatca aaatcttcac ctataccaca
    33001 gccaaaagcg gtaatcatat tttgaatttg ctcagatttt aaaattttat ctagtcttgc
    33061 tttttcaaca tttaaaattt taccacgcaa aggcagtata gcttggaaag atctttccct
    33121 accttgtttt gcagaacctc ctgcagaatc cccttccaca agataaattt cactttcact
    33181 tggatcttta ctttgacaat cagccaattt ccctggtaaa gttcctacgc ttaaactttc
    33241 ttttttacgc gttaattctc tagctttttt cgctgcttct cttcctctag ctgccattaa
    33301 ggctttgttc attatagctt tagcttcgat aggattttct tcaaaatatt tagtcaaata
    33361 ctcaaaactt gcttttgaaa ctataggacg cacataagtt gaaccaagtt ttcctttggt
    33421 ttgtccttca aattgtggtt caggcacctt tacactcaca acagcgatta aaccttcacg
    33481 cacatcttca cccgtgattt tattatcctt ttctctagca cttgcatttg cttctatata
    33541 gttacttatc acacgagtta agcccattct aaaaccagct tcgtgtgttc caccatctgg
    33601 ggttttgata ttatttacaa aagagagtaa attttcacta taagtatcat tgtaaagcaa
    33661 agctacttca acattcacat cttcttcatc tacactaaag aaaattgctt tagttaaagc
    33721 ttctttttta tttaagtctg taacaaactg agaaattcca ccttcaaagt gaaaactttc
    33781 atgtttgcct acgcggttat ctttaaaatt tatagtgatt tttggattta agtatgcaag
    33841 ttcacgaaat cttttagcca aaatttcata atcaaattca gttacttcaa aaatttgatc
    33901 atcaggccaa aattctatag ttgttcctgt ttttttactt tttcctatca caccaaattc
    33961 actgataact ttaccttctg aaaattcttg acgataaatt tctccatttc tttcaactgt
    34021 agctacaagt tttttagaga gtgcatttac aaccgaaacc ccaacaccgt gcaaaccgcc
    34081 tgaaactttg taagtatctt tatcgaattt tccccctgca tgtaggacag ttaaaacaac
    34141 agttaaagtt ggcatatttt cagttgggtg catatcaaca ggaataccac gaccattatc
    34201 actaactata cagcttcctt cagtagtgat ttctacatct atagtatcac aatgtcctgc
    34261 catagcttca tcgatagaat tatctacaac ttcataaatc atatgatgaa gtccgcctat
    34321 gtttgtatct cctatataca tacctgggcg ttttctaaca gcttctaggc cttttaggac
    34381 tttaatatta ctcgcaccgt aattttcttg catatttttc ctttatcttt tacttgtttt
    34441 attacaaaat cataggcatg ataatcattg atagtccttg ggatttgact ataaatgctg
    34501 aattaggttc atttacactt aaagtgaatt tttcttcttc tatagaagtt aagaaatcaa
    34561 gtaaatattt gatttttata gtaagattaa attcttcact tactcctgtt tgaatttcaa
    34621 gttctgtttt tgcttccata ttgtctaaac ttataccttc aaagatgatt ttatctttgt
    34681 taaaatgaag tttcattttt tcagttacaa cgctgatttt tttaagacta tctataaaat
    34741 cttcagttga aaaactgagt tcttgtttga aagtttttgg tataactttt tcataatctg
    34801 gaaatttatc attgataagt tttgtaaaga attcaaaatt ttcattttta gcgataagca
    34861 tattttgatc ataaaaaatt tctatttttt catagaaaag tttttgcatt tccataatag
    34921 cttttttagg gatactaaaa cta
//
LOCUS       DAEBKH010000003        25125 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.003, whole genome shotgun sequence.
ACCESSION   DAEBKH010000003 DAEBKH010000000
VERSION     DAEBKH010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25125)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25125)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25125
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.003"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..526)
                     /locus_tag="KIL20_000081"
     CDS             complement(<1..526)
                     /locus_tag="KIL20_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720152.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVAEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFYMQNDFLNFQKKIDVDSVLDLLKEKFETTGQNLTKTS
                     HEKDRYLHLLEENLYQLGNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVL"
     gene            complement(528..2330)
                     /gene="uvrC"
                     /locus_tag="KIL20_000082"
     CDS             complement(528..2330)
                     /gene="uvrC"
                     /locus_tag="KIL20_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HBD2720153.1"
                     /translation="MTKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFITTNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKRISREKYLEILDEAMHALLNPSILIKNLEKQMLVLAQ
                     NENYEEAAKVRDQIVTIKDLEVKVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKI
                     ISVNSKITPIKNDIQWDKNEIYKQLILENFSMDIPLLANVIYVYEEFEDRMLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKSYFELENLPN
                     DIEIFDNSHLQGMANVGAMVTYSANSWDKSKYRKFHLKHKNDYDQMREVLMRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGARDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNLGLSSGVIQK
                     LLAYYGNFESIYKADFKDLAMLVGKKVAQKIKEN"
     gene            complement(2323..2817)
                     /locus_tag="KIL20_000083"
     CDS             complement(2323..2817)
                     /locus_tag="KIL20_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720154.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAVNKNKNDEKLSKNSYLELSKGEFKNCFEDEKLFKKFEDLRELIKKG
                     SNLD"
     gene            2956..4491
                     /gene="guaA"
                     /locus_tag="KIL20_000084"
     CDS             2956..4491
                     /gene="guaA"
                     /locus_tag="KIL20_000084"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HBD2720155.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLGLPILGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEVKKDSALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESVWNMGSFAKTQAEKIREEVGSDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSGEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLANVRDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRPSLELLRKADVILLEELKSTGWYDKTWQAFCVLLNIKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEVLENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            4577..6037
                     /locus_tag="KIL20_000085"
     CDS             4577..6037
                     /locus_tag="KIL20_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720156.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKPVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMIADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRNNRLASLEAQMKTLQSEINLKSNAANADPEKLKA
                     RQERLTKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            6277..7527
                     /gene="purD"
                     /locus_tag="KIL20_000086"
     CDS             6277..7527
                     /gene="purD"
                     /locus_tag="KIL20_000086"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HBD2720157.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHAKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            7524..7976
                     /locus_tag="KIL20_000087"
     CDS             7524..7976
                     /locus_tag="KIL20_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HBD2720158.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIIGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAIRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            7966..10014
                     /locus_tag="KIL20_000088"
     CDS             7966..10014
                     /locus_tag="KIL20_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HBD2720159.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKISAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNDPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYILPGAKSGKITQNYLEEYDKENEHTSLYAVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELQNLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            10084..12243
                     /locus_tag="KIL20_000089"
     CDS             10084..12243
                     /locus_tag="KIL20_000089"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HBD2720160.1"
                     /translation="MQYSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     TYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEILNLEIAKDWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGITALQMDIKLGGIDQEILKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKSKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            12240..12722
                     /locus_tag="KIL20_000090"
     CDS             12240..12722
                     /locus_tag="KIL20_000090"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HBD2720161.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSVKSRQDGFYYQHPRNRF
                     WPILETLFDVRLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLSPIL
                     SQTKIQAIFTTGQSAYKFFIKFHPRLKAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            complement(12761..13423)
                     /locus_tag="KIL20_000091"
     CDS             complement(12761..13423)
                     /locus_tag="KIL20_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HBD2720162.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     IN"
     gene            complement(13441..14625)
                     /locus_tag="KIL20_000092"
     CDS             complement(13441..14625)
                     /locus_tag="KIL20_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD2720163.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISAVFDVVAFLIACSFVTIYFFIYGRKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAANGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGICFYLQAVASNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGLMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            14679..15134
                     /locus_tag="KIL20_000093"
     CDS             14679..15134
                     /locus_tag="KIL20_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HBD2720164.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFINSAGTSG
                     EHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDEAYKILSLACKNLLVFLSK"
     gene            15386..16663
                     /gene="porA"
                     /locus_tag="KIL20_000094"
     CDS             15386..16663
                     /gene="porA"
                     /locus_tag="KIL20_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 1 major outer membrane porin protein PorA"
                     /protein_id="HBD2720165.1"
                     /translation="MKLVKLSLVAALAAGAFSAANATPLEEAIKDVDVSGVLRYRYDT
                     GNFDKNFVNNSNLNNSKQDHKYRAQVNFSAAIADNFKAFVQFDYNAADGGYGANGIKN
                     DQKGLFVRQLYLTYTNEDVATSVIAGKQQLNTIWTDNGVDGLVGTGIKVVNNSIDGLT
                     LAAFAVDSFMAAEQGADLLGHSNTSTATPNQVPFKVDSVGNLYGAAAVGSYDLAGGQF
                     NPQLWLAYWDQVAFFYAVDAAYSTTIFDGINWTLEGAYLGNSLDSELDDTTHANGNLF
                     ALKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEIFYTTGSRLNGDT
                     GRNIFGYVTGGYTFNETVRVGADFVYGGTKTEAANHLGGGKKLEAVARVDYKYSPKLN
                     FSAFYSYVNLDQGVNTNESADHSTVRLQALYKF"
     gene            complement(16778..17899)
                     /gene="dnaJ"
                     /locus_tag="KIL20_000095"
     CDS             complement(16778..17899)
                     /gene="dnaJ"
                     /locus_tag="KIL20_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HBD2720166.1"
                     /translation="MEISYYEILEITQNADKETIKKAYRKMALKYHPDRNQGDKEAED
                     KFKLVNEAYEVLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEG
                     FGSSRRRKSSNDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGK
                     LQTCPKCQGRGQVGVSQGFITFAQTCPDCQGIGEKASEKCSDCKGLGYNESKDSVELN
                     IPEGVDTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQA
                     ILGESIKVPTIRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRMGNQIVQISIKFPTS
                     LNDEQKELLEKLSESFGIKDGMHQEQKGLFEKITNWFKS"
     gene            18056..18727
                     /locus_tag="KIL20_000096"
     CDS             18056..18727
                     /locus_tag="KIL20_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HBD2720167.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            18724..19959
                     /locus_tag="KIL20_000097"
     CDS             18724..19959
                     /locus_tag="KIL20_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HBD2720168.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLRSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     SAILEEAKEHLMRDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            19959..20531
                     /gene="recR"
                     /locus_tag="KIL20_000098"
     CDS             19959..20531
                     /gene="recR"
                     /locus_tag="KIL20_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HBD2720169.1"
                     /translation="MAKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCGQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(20528..21064)
                     /locus_tag="KIL20_000099"
     CDS             complement(20528..21064)
                     /locus_tag="KIL20_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HBD2720170.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHPEFTLDFIDG
                     GTLALQLSYIIARYDRLIVLDCIEAQDASIGDIFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLTKEGFAYE
                     KIADFSLQELADISYKNY"
     gene            complement(21061..21753)
                     /gene="cybH"
                     /locus_tag="KIL20_000100"
     CDS             complement(21061..21753)
                     /gene="cybH"
                     /locus_tag="KIL20_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HBD2720171.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVMLGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKYIKEEKH"
     gene            complement(21764..23479)
                     /locus_tag="KIL20_000101"
     CDS             complement(21764..23479)
                     /locus_tag="KIL20_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HBD2720172.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASDEAFKYTSNPYATGADKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNPNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGIGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDAKGNNLSEYK
                     VNVNL"
     gene            complement(23482..24621)
                     /locus_tag="KIL20_000102"
     CDS             complement(23482..24621)
                     /locus_tag="KIL20_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HBD2720173.1"
                     /translation="MIDYHQIESRLSALEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLESAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPDFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(24741..>25125)
                     /locus_tag="KIL20_000103"
     CDS             complement(24741..>25125)
                     /locus_tag="KIL20_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HBD2720174.1"
                     /translation="EDDKQNIENIAEFIDKNTKLEIIGSKVGFRSYSSDRFMIVGNAY
                     DEVFYKEEYKALLWTKNKEQKLAKISCNLYFNFAHGSRGFSTSVLAARYLCALINNEP
                     LYLEKKYIHAIHPARFLIRKLKKGL"
BASE COUNT         8841 a         4336 c         3871 g         8077 t
ORIGIN      
        1 gcaaaacctt tccatgagat gtccctataa tgcttttatg atgctctaaa gcctcattta
       61 attctaatct aatttgatct ttttgagaat ttaaggcatt taaaatcaaa gaattaattt
      121 ctttattata cccttcattt aagcaacgca ttgcattgga tatatttcca agctgatata
      181 aattttcctc caataaatgc aaatatctat ctttttcatg ggatgtttta gttaaatttt
      241 gacccgtagt ttcaaatttt tcctttaaca aatcaagcac gctatcaaca tcaatctttt
      301 tttgaaaatt taaaaaatca ttttgcatgt aaaaaatttt ttgatatatt ttgtttatat
      361 ttctattttg tctaaaagca aaaataaaaa gtgttaaaga taaaacaaaa atgctagaaa
      421 acatacctat tttcagttgt tcagcaacac tatcaagctt tgagatatca atacttaaat
      481 acgctaaaat tagattaaaa ataaaaatta tccctgctaa tatcaaatca attttccttt
      541 atcttttgtg ccactttctt gcctacaagc attgcaagat ctttaaaatc agccttatat
      601 atagattcaa aatttccata atacgctaaa agtttttgta taacccctga actaagtcct
      661 aaatttacaa gcttagaact attcaagtcc tgttttttct tagtattttg atgaaagctg
      721 atagcaaaac gatgcgcttc atctcttaat ttctgtaaga attgtagttt tttatcgtta
      781 atacttaggc taaattctcc ttttaaggaa tgaattttat ctctagcacc tcctttagcc
      841 ctatgtgctt ttgcatcgat tttttctttt gaaatagcta aaatatcgac atttgcccca
      901 ctacttacaa tgatttcttt agccaaatca agcaaagcct tgcctccatc tataagccat
      961 aaatcaggag ggggtatttt atcaaagtcc aaagccctac gcattaaaac ttcacgcatt
     1021 tgatcataat catttttatg ttttaaatga aatttgcgat attttgactt atcccaagaa
     1081 tttgcactat aagttaccat agctccaaca tttgccatgc cttgcaaatg agaattatca
     1141 aaaatttcta tatcatttgg taaattttca agctcaaaat aagactttaa ttctttttgt
     1201 atagtaaaat catgattttt ttgctctttt tctatattta aaagggcatt ttgaaaagcc
     1261 aaatcacaaa ttcttctttt ttctcctatt ttagggattt taatactgat ttttttatca
     1321 aacctttggc ttaaaatttc ttctaaaagc attctatctt caaattcttc ataaacataa
     1381 ataacatttg caagcaaagg aatatccatg ctaaaatttt ctaaaatcag ttgcttataa
     1441 atttcatttt tatcccattg tatatcattt tttataggag taatcttaga atttacactg
     1501 ataatttttc cattttgcac tacaaaacgc aaggttgaaa gcatggaatt ttcaaaagct
     1561 aaagcaaata cttcaaaatc ttctaatttt gcaatatcta tttcaacctt aacttctaaa
     1621 tccttaatcg ttacaatctg atctcttact ttagctgctt cttcataatt ttcattctgt
     1681 gctaaaacaa gcatttgttt ttctaaattt tttattaaaa tactaggatt taaaagcgcg
     1741 tgcatagcct catctaaaat ttcaaggtat ttttccctgc taatgcgttt atcgcaaggc
     1801 gcaagacaac gagaaatttg ataaaaaata caaggggatt tacaacttgc tttttgcttt
     1861 aaaggatagt ataaataaag cgcatctaaa agctctctag cgcctttaaa aaaagggcca
     1921 aaatatttaa ttttgctttt ttttactaat tttctagtga tctcaaagcg tggaaattct
     1981 tcttcaaaat ccacataaat ataaggataa gttttatcat ctcttagtaa aatattatat
     2041 tttggatgca gttgtttgat aaaagaattt tccaaaatca aagcatcggc ttctgaatta
     2101 gtagtgataa attccaaatg cactgtttct tcaatcattt tttgaattct taaagaattt
     2161 cttgggtttg catgtaaatt tggagtaaaa gcgaaataag atttgacacg atttttaaga
     2221 tttttagcct tacctacata taaaagcttt ccttcttgat taaaatattg atacactcca
     2281 gcactattag gaagagtttt taactcattt tctaaattct ctttagtcaa gattagaacc
     2341 tttttttata agctctctta aatcttcaaa tttcttaaat aatttttcat cttcaaagca
     2401 atttttaaat tcacccttag aaagctccaa ataagaattt ttagagagtt tttcatcatt
     2461 tttgttttta tttactgcat aagtgtattt ttgagaaaag atttttatat cttttatatc
     2521 aacaaatcca cttaaaggat atttttgtcc atacgctttt atgagaaatt taatataaat
     2581 tttgctatca tcatgattta attcttgata agctgctgga tgtaaggtta ttatatttaa
     2641 aatatgattt tttacataaa ttttagcaat caaacgttgc ttagcaagcg gaaaagaact
     2701 taaaaaatct ttgcaaaaaa ataaggtttt taaaggctta taatgaggtt tatccatcaa
     2761 ttcattaata acagcactag cgtttttagt catcttaata ttatttcttt ttcccataag
     2821 atgattttag catttctttt cttaattttc ttctgtgctt gcggatataa aggcaaccct
     2881 caatacacaa gctatgaaca aaatggttcg gtaaaaacca ttaaaaaata cgaacaatta
     2941 cataggtggt aaataatgaa aaaagcagat attttagttt tagactttgg ctctcaatac
     3001 actcagctta tagcaagacg cttaagggaa caaggagttt atgcagaaat tttacctttt
     3061 aatgtgagct tagctgatat taaggcgaaa gaaccaaaag gtattatttt aagcggaggt
     3121 ccagcaagcg tatatgcaac tgatgcgtat ttttgcgata aaggtatatt tgacttaggt
     3181 ttacctattc ttggaatttg ttatggtatg cagcttatgg cacatcatta caaagctaca
     3241 gtagcacctg caggacataa agaatacggc aaagcaaaca tagaagttaa aaaagatagc
     3301 gctttgttta aaaatcttcc aaaaaaacaa actgtttgga tgagtcattc tgataaggta
     3361 gaaaatttac ctcaaggttt tgaagtttta gccacaagtg aaaatagtcc tttttgtgtt
     3421 tttggaaatg aagataagaa attctttgct ctacaatttc acccagaagt acaacacagt
     3481 gaatttggca aaaatatctt aaaaaatttt gctaaatacg cttgcaattg tgaaagcgtt
     3541 tggaatatgg gttcttttgc aaaaactcaa gcagaaaaaa tccgtgaaga agtaggcagt
     3601 gataaagtgc tttgcgcagt aagtggcgga gtagatagta gcgtagttgc tgcactttta
     3661 gctagcgcta taaaagagca agttatagta gtttttgtag acaatggact tttaagaagt
     3721 ggagaaaaag aacaagttga atttatgttt aaaaatacct taggtatcga tcttatcagc
     3781 attgatgcaa gtgaaatttt cctaagtcgc ttggctaatg ttagagatcc tgagcaaaaa
     3841 agaaaaatca taggaaatac ctttatagaa gtttttgaag aagaagcaaa aaaacataaa
     3901 gatgtaaaat atctcgctca aggcacactt tatactgata tcatagaaag ttctgttgta
     3961 ggtgcaagca aaaccattaa aagccatcat aatgtagggg gcttacctga aaaaatgaat
     4021 cttaaactca tagagccttt aaaagaaatt tttaaagatg aagtgcgtgc tttagggctt
     4081 gagcttggac ttagcaaaga agtggtttat cgccatcctt tccctgggcc agggcttgct
     4141 atacgcatta tgggagaagt aaatcgccct agcttagaac tattgcgcaa ggctgatgta
     4201 attttactcg aagaacttaa aagtacaggt tggtatgata aaacttggca agcattttgc
     4261 gtgcttttaa atattaaaag cgttggggtt atgggggata accgcactta tgataatgca
     4321 gtttgcatac gcgttgtaga tgcaagcgat ggtatgacag ctactttctc gcatttacct
     4381 tatgaagttt tagaaaacat aagtcgccgt atcatcaatg aagtagaagg tataaaccgc
     4441 gttgtttatg atatctcaag caaaccacct gcaaccatag aatgggaatg atccattttt
     4501 tctagctctt atttttatta taaaattttt ataaaaataa ggctagaatt tattcaagaa
     4561 atttcaagga agaaatatgc atggaaaaat agctatttat atggattcta caggacgtgg
     4621 aaccgttaca aactcagcaa ataccttttt tgacttcaat cgccaaattt ggaatgataa
     4681 aaaaagtatg ccaagtgttg gtatgcttgt ggaatttaga actctttcta gcgaaaaaaa
     4741 agcagaagac ggcaagcccg ttcaaacaag caaaaccata acaggtataa aaccttcaaa
     4801 atttcaagaa tttaaagaag gggattttat cactgagcat gatttttgga aaactgataa
     4861 tgatgatgaa ttagaagact tgcaaaactc aagaagaagt gcttatataa cagaacttta
     4921 tagaacgaca gactttgaca ctatagaaaa aattcctctt tcttttacta tacctcaagc
     4981 tatacaaaaa tattttgctc atgaaatttt atccgtagaa acacttcaag ccaatctaca
     5041 agatgaaaag gaaattccct gcatacttga ttatcttata cttaaaagat ttttatttaa
     5101 agcttatgat actttaattt ttatggataa tagcatagac caaacccaat ttagcgcatt
     5161 aaaaagcatc atgatgcatt tagagaattc atacaagcaa atgatagctg atcaaaaacc
     5221 aaatatcact aaaattttta acgaaacttt tttatctttg cagtgtcatt accaagcttt
     5281 agtagccacc atagatacaa gaaacaatcg tctagcctca cttgaagcac aaatgaaaac
     5341 tttacaatct gaaataaatc ttaaaagcaa tgcggccaat gcagaccctg aaaaacttaa
     5401 agcacgacaa gaaagattga ctaaactaca aaaagaagca gaatactaca gaacaacact
     5461 aaaaagactt gatgctataa gggaagattt ttataagaaa aattacaata ttttcgaaaa
     5521 tgcttttaaa ctttcacgag aaaagctctt taaaaaaatt gtcacaggtt taaatctatg
     5581 cgcaaccata atggatgtta aaatttggca cttatcttta aaatcatcag gggttaaaaa
     5641 ttcttatttt actatgagta atatagaaaa ttctttctgt tctctttctt ttgcagaaca
     5701 ttacttaagt cgcttaaata aatccgctct aaatcctttt gatcaaaaac ttttagtgta
     5761 tattcaaaaa atcacaaaag aacaaagaaa aaaattttta gttgtcacat cggatttaga
     5821 tttattatgc aaattaaaaa ttgaaaactt ttcacaaaat ccgtattatt tagtaaaata
     5881 cgcacctaaa aaagtaaatt atcagtcttt aatgcgtgat aacacctttg atatagtcta
     5941 tattgatgaa aaacatgttt gggaaaatgt tgccgatatt attttacaag gaaagcattt
     6001 tgacaaatca ggaaaaacca aatttaaact gatttaagac atagaaattt aagctaaatt
     6061 aagttataat ttccttgcct aaacagtttg tggtatttaa agtgattcaa cacattttta
     6121 ttaactgcga ttgtgtgatt taccgtgttc tgtggcatcg tttgagcttt gaaaaaagcg
     6181 agaagttgca gcctttaaaa attacctagc ggttttcttt gactttttgg ggtcaatctt
     6241 tgttaaacgg ctgtttgggt ttaaaaggag atataaatga aaataatgat tttgggtagt
     6301 ggcgcaagag aatactctat tgctttagcc ttaagaagag tagacaaaaa tttagagttt
     6361 tattttgctc ctggaaatgg cgctaccgaa agtcttggaa caaatttaaa cctaaaagat
     6421 ccagtagttt tagcaaccta tgcaaaagaa aaaggttttg atctttgtat agtaggaagt
     6481 gaaagttttt tagctgaagg ggttgtagat atttttaaac aacaaggact tgctattttt
     6541 gggccaagca aagctgctgc aatgcttgaa acctcaaaat cttttatgaa aagctttctt
     6601 aaaaaatacc gcatcaaaac agccaaattt ttaaacacaa atgacattga aaaagcaaaa
     6661 aattttatat atagtttaac ccctcccata gtagtaaaag ctgatggact ttgtgccgga
     6721 aaaggcgtta ttatagctaa aactcatgaa gaagctatag aagaaacagc taaaatgctt
     6781 agtggagaaa gctttggaga tgctggaaaa ctcgttgtaa ttgaagaatt tttagacggt
     6841 tatgaattaa gcatttttgc agtatgtgat ggcaatgatt ttgttttact tcctgcagca
     6901 caagatcaca aaaaattact cgataatgat caagggccaa atactggtgg aatgggtgct
     6961 tacgccccta gctctttagc gaatgaaagt ttgcttagaa aagttcaaaa agatattatt
     7021 ttaccgactt tagcaggtat gaaaaaagaa ggagcggaat tttgtggcgt tttatttata
     7081 ggcgctatga tcgttggaaa taaaccttat gtattagaat ttaatgttcg ctttggcgat
     7141 cctgaatgtg aagttttaat gcctttaatc gaagatcctt tagagcttat tttagctgct
     7201 actcaaagac gcttaagaca cgcgaaaatc aaaatcaaaa aagaatttgc agtaggggtt
     7261 gtatgcgcga gtgaaaacta tccttacaaa agttcaccaa aaagtgaaat tactgtaaat
     7321 aacattcctg aaaactctca tatttcttat gctggagtaa gcctagaaga tggcaaatta
     7381 atggctgatg gtggaagagt tttagtttgc gttggcacag gaaaaagtat agaagaagcg
     7441 caaaaaaatg cttataaact ttgtgataat gtaaatttca aaggaaaaca atacagaaaa
     7501 gacatcgctc atcaggttct taaatgaaag aaaatttaca agaccgctta gagcgtgaaa
     7561 atctaaaaat agcaagtttt ggaaaaagag ttctagcttt tttaatcgat gatatggtta
     7621 tttctttgat tgtatttatc attttttatg atcgtctaat ccaagcaaaa gatttatttg
     7681 aaacgactca aattatagga aatttttatc ttggcttcat cttgcttcat tttagctatc
     7741 aagcgatttt tacttatctt tatggggcaa gtttgggaaa aatattatgc aaaattatca
     7801 tcttggatga aaatcttctc gacaaaccca atctcatcca aagttgcatc agatctgcca
     7861 taagacaagt tagtgctatg gcgtttatgc ttgggtttgc ttgggcttta agcaatgatt
     7921 tgcgcaaagc ttgggaggat tatctagcaa ggacaatagt agtcgatgtg gcgtaaattt
     7981 tccctattgc taggaactag catagcttta aatgcagcac aagttgatat ttacgctctt
     8041 gatgcaaaaa aagaaggtga tattcttact gcaaacaatg atgttattat tttttctgat
     8101 ttttatttca tcactgccaa taaagcaatt tacaatgaaa aaaccggaga tgttgagctt
     8161 tttggcgatg ttaacatcct aaggggacaa aacgaaagat cacattctga ttatgctaaa
     8221 atcaacctaa attccaatca agccgatttt agtaattttt tcttttccaa taacaatctt
     8281 gaagtatggt ttcaaagcaa aacaagccat ctaaatgata aagtctttga aagcaaaatt
     8341 tcagcagttt caagctgcaa tgttgaagat cctgattggg aaattcgttt ttcaaaaggc
     8401 tggcttaacc gggaaaccaa ttttgttcat ctttacaatg caagattata tgttaaaaat
     8461 accccagttt tttatctacc ttattttgga tttagcgctg atactcatag acaaagcggg
     8521 cttttaatcc caaaaatcgt tttaaaaagt agcgaaggct tatactatga acaacctatt
     8581 tatatagcca ctcaagaaaa ttgggattta gaacttgatc cacaaattcg aacaaaccgt
     8641 ggttttggac tttattctac tttaagattt cttgattctc catattcaac aggagaatta
     8701 aattttggtg cttttaggga aaatagctcc tattttcacg atgaaaattt gaaaaatcaa
     8761 acccactatg gaatagaact aaaatactca agagatgatt taatcaaatc tttactcagt
     8821 gataattttc aagaaggcct atggatagat gcaacctatc tcaacgatgt ggattattta
     8881 aatttaggaa gtagggatta tcgagatctt aactcgcttg taacctccaa aatcaattat
     8941 tttttagccg atgaaaacaa tttttatgga gcttatgcaa gatattatat cgacacatct
     9001 aaacttagca acaatacaac cttacaagaa tatccaagct ttcaatatca tagattttta
     9061 aataaccttt ttgatgaacg cttgcgttat tcatttgatg cttcatttca taatttttac
     9121 cgacctgctg gttcttatgc aaatgagcta aatttagact tgcctatctc gtatcacaac
     9181 gctttttttg gagacttttt acactttact tttacagaaa gattttatgc ttcttttgta
     9241 aattatagca acgatcccga aagaaaccat gagcattatt tcagaaacac tcatgatttt
     9301 aatctctaca ccgatctttc aaaagcttat gaaaatttct ttcatacttt aaatttaggg
     9361 gtgaattaca ttttaccagg agcaaaatca ggtaaaatca cgcaaaatta tcttgaagaa
     9421 tacgacaaag aaaacgaaca tacaagtctt tatgctgtgc aatatttcta taacaacgaa
     9481 ggacaaaaaa aactcaaaca cagaatttca cttgactatc tcaataaaca aaatgaattc
     9541 tatgaacttc aaaatctttt aacttattat tttaatgaaa acatcaatct taacagcgaa
     9601 gtgctttact cttatgaaca aagtcgcttt accaatgtca tcagccaaat agaagtcaat
     9661 acaaattcaa aatttaattg gatgttttct catgcttatc aaaacgatga gtatggaaaa
     9721 tatagcttta ttggcacaag agcaaattat attgccacac ctaattacaa tttatttggt
     9781 ggaatttggt ttgatactca aagagctcat gcaaacatgt gggaacttgg ctatacctac
     9841 caaagaaaat gttggaacta ttctttaatg tatagagaaa gaatcgatcc acaactcaca
     9901 agtggtggca tcacagctaa aaatcaaagc ggagtttatt ttattttcaa cttctatcct
     9961 ttaggaggag taaaatacga tttctcttta gcagaaagtg aaaacaaaat ttaaaaagga
    10021 tgaaatttgc taaatatttt aaaaaatttt acgaatttat tatctggtaa aaaaggaaaa
    10081 ataatgcaat acagcataga aattaacaaa aatacagaaa tatttgatat agacaaagtc
    10141 gccaaacaag ctgccggtgc tgttttaatg agacaaggca aaagcgttgt tctagctaca
    10201 gttgcaagag aagaaaaaca agttgaagaa gattttttac ctctaaccgt ccaatacatc
    10261 gaaaaagctt atgccgcagg aaaaatccct ggtggttatg tcaaaagaga aaccaagcca
    10321 agcgatgcag aaaccttaac agcgcgcatt attgatagaa gcttacgccc tctttttcca
    10381 aaaggctata cttatccgac tcaaatcgtt gtgatggttc tctcagctga tcctaaagta
    10441 gatttgcaag taatgagctt aaatgccgca agtgtggcac tttatcttag tgatatacct
    10501 atgaaagctc cagtatgtgg tgtgcgtata ggaaagatag atggaaattt catactcaat
    10561 ccaaacaatg aggaacttca aaatagcacc ctagatctct atgtagcagg tgtaaaagat
    10621 gagcttttga tgatagaaat gagagcctta cctgatcaaa aagaaaatga aatctttatc
    10681 gaagctcctt atgctgatgt tttaactcaa accacttcac aaaatatgaa tgaacttagt
    10741 gaagatgaaa ttttagaagc tctaaattta gctcaaaaag ctatattaaa tggttcaaat
    10801 gcttatgaag aagcctttag caaacacaaa aaaaattctc aaatcgaact aaaaaatgag
    10861 attgaacatc ctgaaatttt agcttttata gaaaataatt tccaaaaaca aatcaaagaa
    10921 gccatcaatc aaatggcaaa aagcgaaaga gcgagcgaat taaataaaat cgctaaagaa
    10981 attttaaatc ttgaaatcgc taaagactgg agcgaagaaa gtgtcttaaa taccttagct
    11041 aaagtcaaac gcaaacttat tcgtgagcaa attttaaatg aaggcaaaag agctgatggt
    11101 agaagtttaa acgaggttcg tcctatcagt atagaaacca atatcttgcc aaacgctcat
    11161 ggctcttgtc ttttcactcg tggacaaact caagctctag ttgttgcaac cttaggcgga
    11221 gaaaacgatg ctcaaatgat agacttgctt acagaaaaaa atcctataag cgaacgcttt
    11281 atggtaaatt ataattttcc aggtttttca gtaggcgaag caagtcctat caaagctcca
    11341 ggaagaagag aactaggaca tggaaattta gccaaaagag cactttatcc aagcgtggat
    11401 gaaaactatc cttatgtaat ccgcttagtc agtgaaattt tagaaagcaa tggctcaagt
    11461 tctatggcaa cggtttgtgg cggatcttta gccttaaaag cagcaggagt gccaagctta
    11521 aaacttgttg caggagtagc catggggctt atctttgaag ataacaagta tgctgtttta
    11581 acagatatca tgggacttga agatcatgat ggggatatgg actttaaagt agcaggaagc
    11641 aaagacggca ttacggctct tcaaatggat ataaaactag gtggaatcga tcaagaaata
    11701 ctaaaacaag ctttatacca agccaaagaa ggaagaattc acattctaaa tatcatggaa
    11761 gaagccgcca aagaaatcat agtcaatgaa gaagttttac ctaaacttga gctttttagc
    11821 gttgatcctt caaaaatcgt tgatatcata ggacaagccg gaaaaaccat caaagaaatc
    11881 gtagaaaaat ttggcgtttc tatagactta gatcgcgaaa aaggtgaagt aaaaatagca
    11941 ggtagtcaaa acgaacaaat caaagccgca aaagactaca tcataaacat cacaagctct
    12001 caaaaaggaa ctaaaaaagg ctctaaagac aaagatatat caggctttga acttgggcaa
    12061 gaatttcaag gtattgttaa aaaaatcgct ccttttggag cctttgtgga acttaaaaat
    12121 ggtgttgatg gtttattgca tagttcaaaa agcaagcatc ttaatttaag cgaaaaccaa
    12181 agcttaaaag ttaaaatcag cgaaattaaa aacggaaaaa tttctgtgga tttgtgtgag
    12241 tgagtgaatt tctaactcat ccttttgagc ctttttttga caaagattct aaaatcttaa
    12301 ttttaggatc ttttccttcg gtaaaatcaa gacaagatgg cttttattat caacacccaa
    12361 gaaatcgttt ttggcctata ctagaaacac tttttgatgt aagattagaa aatatcacag
    12421 aacaacaagc ctttttaaga aaaaaacata tcgctctttg ggatgtactt caaagttgca
    12481 agataaaaaa ttcagatgat aaaactataa gttatgcaaa agccaatgat ttaagcccga
    12541 tcctttctca aaccaaaatc caagccattt ttactactgg acaaagtgct tataaatttt
    12601 ttattaaatt ccaccctcgc ttaaaagcca tagccctacc ctcaacttct cctgcaaatt
    12661 taaatttttc ttttgaacag cttttacaaa actatgaaat aatcaaaaaa tttacaaaat
    12721 aacaaactaa gcattacccc caagtaaaac aagaaaaaag ctagttaata tctagctttt
    12781 gcgtgttatc cttgaattca aattccactc tcttagctcc aaaaccttta gcaatagctt
    12841 ctaaagtatc cttagcactt ttatgaattt tgctttctaa attttggata agatttaaag
    12901 acaagtcttt aacctcatct ttggcttctt ttatgagttt gtttttatca ctttcgctaa
    12961 aactaatccc cgtactattg atagaatcag gcagtaaaaa aggtaaaaat ttagcatttt
    13021 tttcatcata aaatttcata tctatgatgc tgtgtttgta tctacactct ggcatgatga
    13081 tcttataagc atcgtcccct aaaggcaaaa tatcaaagtt tttatccctt aaatcataca
    13141 agaaagtgat ctcaaattca aaaatcaaag caatctgtct ttcactcaaa gaccatccta
    13201 aaagattttt ccaaattcca ttaaaagcgc tatctttttt agtgacaatc tctttactaa
    13261 aaacttgaaa aacacttaat tctcctatgg atttaagttg catgatatcg ctaaaacttt
    13321 gcgtgctttt ttcttctatt ttagggcttt tatactgcct aaaaagcact acaaacaaaa
    13381 gcacaagtaa aatcatcact aaaacaaata aaatcatttc cattttaaac ctttctaaat
    13441 ttataaacct tgatttgaaa agatatattt tttctcaaac gccaagaaaa taaaagcatt
    13501 aatgataaaa atcaaacaca caaaagtaaa aacaaattcc acgctaaaat gagaagccat
    13561 aagccctccg ccaaaagcac cgcaaaaatt tcccaaaaat tgacaagttt gattaaaacc
    13621 aaaaatcaca cttaaatttt tagcactcac acttttttta agcaaggcat tcacacaagg
    13681 caaaagccct ccaagtccta cacctataag taaacgcacg aaaataagcg tataaacatt
    13741 acttgctaca gcctgcaagt aaaagcaaat tccacaaaat atcaaagctc caaaaataat
    13801 cttactaggc cctatcttat cggcgatttt tccaagtttt ggtgcgaaaa aaagattgct
    13861 aatcccattt gcagccacca ctatacccgc ccaaagagcc aaatttccac cttgatgaat
    13921 ttgctcaaca tagatactta aaatcggcat cactccaaaa gtaccaaatt gtatcacaaa
    13981 agtagtgata aaaagaacga tgataagggt tttgttttct ttcacttttt gagtattttt
    14041 cttcgcctct ttttgaattt ttctcccata gatgaaaaaa taaatcgtca caaaagaaca
    14101 agcgatcaaa aaagccacca catcaaaaac cgcactaatg ctaaaaaatt cagccacaaa
    14161 gccaccaaac aaaggcccaa gtaaacttcc acttatagaa gccgtagaaa gagttcctaa
    14221 agcataagcc actttttctt taggcgctat cacggcgata aacacaacag cagcagaagt
    14281 aaaacctgaa attatccctg ttaaaccccg tacaaaaacc acttctaaag cactatgagc
    14341 aaagctaagc cataaggtta aaacggacat tccaaaactt gcacgaagaa gcatattttt
    14401 ataaccatac tttgcaccca aaaaagccca caaaggtgaa aaaacagcca taaaaagcgg
    14461 agtgatccca aaagcaagtc ctgaataaaa cgctatctcg ctcgtatcaa catgtcctag
    14521 ttctttgata taaaaaggca aaatcggagc gatttgacta agccccatac ttgtggtaaa
    14581 aacaccaaac caacacacaa gcaaagttct attgaaattt tccatggatt tattgtatga
    14641 tattttttat aatttttaat taaaactcaa ggataaaaat gaaaaaaata ctctttatat
    14701 gcttaggcaa tatatgccgt tcgcctatgg cagaatttat catgaaagat cttgtcaaaa
    14761 aagcaaattt agaaaaagaa ttttttataa acagtgctgg aacttcagga gaacacgatg
    14821 gagaaggtat gcactatggc accaaaaaca agcttgctca acttaacata gaacacaaaa
    14881 acttcacaag caaaaaactc actcaaaagc tttgcgatga aagcgatttt ttaatcacca
    14941 tggacaattc taacttcaaa aatgttttaa aaaacttcac caacacccaa aacaaagttt
    15001 taaaaatcac tgattttagt cctagtctaa actacgatga agttcctgat ccttggtata
    15061 gtgggaattt tgatgaagct tataaaattt tatccctagc ttgtaaaaat ttacttgttt
    15121 ttttatcaaa ataatttaaa acaactatat attacttctc gtttactttt taggcttata
    15181 cttctaaacg aaccgaaaaa cattcataag aaaaactcct taaaattaca cgcctagctt
    15241 aaatcccttt agctaggctt ttctttagat gtttttatcc ttcggattta aaatttttac
    15301 tattttaagt gcttcttaag aaaaaactcc aaatttatgt gctacaatta cgatgtttta
    15361 ttaatttttg acaaggagaa ttctcatgaa actagttaaa cttagtttag ttgcagctct
    15421 tgctgcaggt gctttttcag cagctaacgc tactccactt gaagaagcga tcaaagatgt
    15481 tgatgtatca ggtgtattaa gatacagata cgatacaggt aattttgata aaaatttcgt
    15541 taacaactca aatttaaaca acagcaaaca agatcacaaa tatagagcac aagttaactt
    15601 cagtgctgct atagctgata acttcaaagc ttttgttcaa tttgactata atgctgctga
    15661 tggtggttat ggtgctaatg gaataaaaaa tgatcaaaaa ggactttttg ttcgtcaatt
    15721 atacttaact tatacaaatg aagatgttgc tacaagcgta atcgctggta aacaacaact
    15781 aaacactatc tggactgaca atggagttga tggtttagta ggaacaggta tcaaagtagt
    15841 aaacaacagc atcgatggtt taactctagc tgcttttgcc gtagatagct tcatggctgc
    15901 agagcaaggt gcagatttat taggacatag taatacttca acagcaacac caaatcaagt
    15961 tccttttaaa gtagattcag taggaaatct ttacggtgct gctgctgtag gttcttatga
    16021 tcttgctggc ggacaattca acccacaatt atggttagct tactgggatc aagtagcatt
    16081 cttctatgct gtagatgcag cttatagtac aactatcttt gatggaatca actggacact
    16141 tgaaggtgct tacttaggaa atagccttga tagcgaactt gatgatacaa cacacgctaa
    16201 tggcaattta tttgctttaa aaggtagcat tgaagtaaat ggttgggatg ctagccttgg
    16261 tggtttatac tacggtgata aagaaaaagc ttctacagtt gtaatcgaag atcaaggtaa
    16321 tcttggttct ttacttgcag gtgaggaaat tttctatact actggttcaa gactaaatgg
    16381 tgatactggt agaaatatct tcggttatgt aactggtgga tatactttca acgaaacagt
    16441 tcgcgttggt gctgacttcg tatatggtgg aacaaaaaca gaagctgcta atcatttagg
    16501 tggtggtaaa aaacttgaag ctgttgcaag agtagattac aaatactctc caaaacttaa
    16561 cttctcagca ttctattctt atgtgaacct agatcaaggt gtaaacacta atgaaagtgc
    16621 tgatcatagc actgtaagac ttcaagctct ttacaaattc taagaagctt tcaagtctaa
    16681 cttcaaggcg gggttttgct ccgccttttt ttatgcctga tttttaaaac ttaaatttat
    16741 ataaaaaatt ttcccaagct aaaacgcttt aggaaaatta agacttaaac caattagtga
    16801 ttttttcaaa aagccctttt tgctcttgat gcataccatc tttgatgcca aaactttcac
    16861 ttagtttttc taaaagttct ttttgttcat cgtttaaaga agttgggaat ttgatagaaa
    16921 tttgaacgat ttgatttccc atgcgagaac tatgaacatc ttttacccct tctttttcaa
    16981 gaacaaatct ttgtccatct ttagcaccct ttggtaaatt taaggtcgct tcaccgcgta
    17041 tggtgggtac ttttatactc tctcctaaga tagcttgagt aaaaaacact ggaaattcta
    17101 tatatatatc atcatcatct ctgataaaag tatcatcttc agcggcgatg atcttaacat
    17161 acatatcccc tctagtacca ttttttaaga tattaccttt agcattgaca cgaagcttca
    17221 tacctgtatc tacaccttct gggatattaa gctcgacact atctttgctt tcattataac
    17281 ccaaaccttt acaatcacta catttttcac tagctttttc tccaattcct tgacaatcag
    17341 ggcaagtttg tgcaaaagtg ataaaacctt gagaaacccc aacctgtcct ctaccttgac
    17401 actttggaca agtttgaagc tttccatctt tagcccctgt tccattacaa gttttacaag
    17461 agcatttata agtaaagtct atatttttct tacaaccaaa aaccgcttct ttaaaactta
    17521 attttaaatt aacgataaaa tctgaaggga ttttctcatc atttgaactt tttctacgac
    17581 gcgatgagcc aaagccttct ccaaaaaaac tagaaaatat atctcctaaa tcctcaaaac
    17641 caccaaaacc tgagctacta gaaccaaatc caccgccttt taaagcatct tttccgtatc
    17701 tatcataaat agctcgcttt tcatcattgc ttaaaacttc ataggcttca ttaacaagct
    17761 tgaatttatc ttctgcttct ttatcacctt ggtttctatc aggatgatat tttaaagcca
    17821 tttttctata ggcttttttt atggtttctt tatcagcatt ttgcgtgatt tcaagaattt
    17881 cataataact tatttccaca ttattccttt aaaaaattta aaattttact agaattttaa
    17941 ttttaaaaat tcaaaaatat aattttagca aaaataaaat caataattta tcaaatttta
    18001 aataaaatta tgtaaagatt ttaaagacta cataaaaatt tacaaggaca ctagaatgat
    18061 taatgtgttg atgatagaag atgatcctga ctttgcacaa ttattatctg aatatttagc
    18121 gcaatttaat attaaaatca caaattttga aaatcctaaa agtgctttaa atgtgggtat
    18181 tcaaggctat gattgtctga ttttagattt aactttacct ggaattgatg gtcttgaagt
    18241 ttgtagagaa atccgacaaa aaagcaatat tcctattatc atctcatcgg ctagaggtga
    18301 cttaagcgat aaagttgtgg ggcttcaaat cggtgctgat gattatctac caaagcctta
    18361 cgatccaaaa gaaatgtatg caaggattat gagtcttatt cgtcgcacaa aaagagttga
    18421 acacactaat aatgaaaata ttaactctgc tttcaaaatt gatgaaagaa gacatgagat
    18481 cacctatgaa gataaggttt taacacttac tcctgctgaa tttgaaattt tagaatacct
    18541 tatccaacaa cacggatata gtgtttcaag agaacagctt gtaagtcgct gtaaaaatct
    18601 aaaagataaa gattctaaaa gccttgatgt tatcatcggt cgcttaaggg taaaaatagg
    18661 agatagttca aaatctccaa aacatatttt ttctgttaga ggtataggat ataaactgat
    18721 aggatgacaa aaaattattc tattcatacc aaactgatta ttttatttgt tgttactttt
    18781 ttcttggttt gtgtgctttt tatcgttctt ttaaaaatag aagggaatac ctataatgaa
    18841 gaagaaagtt taaaacaaga aaatcttata aaaaatttac tcatctccta tgaaaacact
    18901 tcaggtgttg aaataggagc ttatcttgga aacagcggtt ttaacgctat acaaaatccc
    18961 aatcttgtaa aagctataag aaataatgga caatcacttt ttaaagcagg cggagagctt
    19021 tgtactcttt cttctttaaa atatcatagc aatctttatt ttgatgttca atgtaaagat
    19081 tttgatggct tatatgaaga aaatactagc gatagggttt ataatctttt attgatagga
    19141 tttttctctt tttctttgct ggttgttttt atgtattttt cggtattaag atctttagag
    19201 cctttaaaaa aattaagaag acaagttgcc gaagttgcaa atggggaaca acctgatttt
    19261 ttagactatc aagaagatga agtaggtaag atcgcctttg aatttcaaaa agctttcaag
    19321 aaaaaccaag aattaatcca atcaagacaa cttttcctaa gaacaatcat gcatgagtta
    19381 aaaaccccta taggaaaagg gagaatcatt tctgaaatga tcaaagaaga cagacaaaaa
    19441 gaaagactta tcgctatatt tttacgcatg gattctttga tcaatgaatt tgccaaaatc
    19501 gaaaatttat tttcaaaaaa ctacaactta cactttaaac ctagtcgttt tagcgctata
    19561 cttgaagaag ctaaagaaca ccttatgaga gatgatttta acaaagtggt aaaagttgat
    19621 ataagatatg atgctttaat caatgttgat atggaaattt tctctgtaat tttaaaaaat
    19681 cttatcgata atgccttaaa atactcaaac aatggcactt gtgagctttt ttgttgtaaa
    19741 gaatgtttta ccattaaaaa tccaggcaaa cctttagcag agcctataga gcattatctt
    19801 gaagctttta caagagaaaa acataatcag gtcaaaggta tggggctagg actttatata
    19861 gtttcagagg tatgtaaact gcataatttt gatttgattt atttttatga tgatggaaag
    19921 cattgcttta aaattttctt tggagataaa gaaaaataat ggcaaaaggc ctagaaaaat
    19981 tcaatgaact tgttgaaagt tttgcaaatt tacctaccat aggaaaaaaa accgctataa
    20041 ggcttgctta tcatctttgc ataaataatc aaatcgatgg catgaaactc gcacacaata
    20101 tagaaaatgc tatccgcttt ataaaacctt gtgggcaatg cggtgcttta agcgaaaatg
    20161 agctttgcga aatttgtagc gatgaagaaa gaaataaaaa cattttatgt atagttgaaa
    20221 gcccaaaaga tatactaaca ctcgaagaga gtcaaagtta caatgggcta tattttgttt
    20281 tagatgagtt aaatgaagaa aaacttgaaa aactaaagca aatcatactt aagctaaata
    20341 tctctgagct catttttgca ttgacacata gcattaattc tgatgcaact atctttttta
    20401 tagaagataa atttaaaggc ttaaacctaa cttttagtaa aatcgctcaa ggaattccaa
    20461 gtggtgtgaa tttagaaaat gtggatttaa tctctttaaa taaagctatg aattttagaa
    20521 caaaaattta gtaattttta taagaaatat cggctaattc ttgcaaagaa aaatccgcaa
    20581 tcttttcata agcaaaacct tccttggtta aaaaatcaag taaagttttt tccatgattt
    20641 tagctccttg tataagctca tctgaaagct taaaactcat cgcttcaata cgctttggca
    20701 cacaagctaa gatgtgtgtt ttaggcaaat ctcctgcaag ttccatgtat tgtaaggttt
    20761 gaagcatttc tatttcatga gcacttccac tccagctgat tttattaggc atagcatcat
    20821 aaggaaagaa aaatatatct cctatactcg catcttgcgc ttctatgcag tctaaaacga
    20881 taagtctatc gtacctagcg atgatatagc taagttgcaa agctaaagtt ccaccatcaa
    20941 taaaatctaa agtaaattca ggatgagtaa atttgtagtt tttttcaagt tgtttgcaaa
    21001 gatgaacgcc taagccttca tctgcaaaca tgatattgcc tattccaagg actaagaatt
    21061 tcaatgcttt tcttctttta tatatttata tccgctaata atagcatcca tagcaccatc
    21121 tttacctttt actgcgttaa aaatcgccat ataaatatgt actggtacaa aaatcataat
    21181 cacccacatc aaaattctat gataagttct tacatcagcc aagccaccca ttgcagcttc
    21241 aagcggtctt aaaatatgat ataaaagccc acctaagccc tcatgataag tatgagtata
    21301 aagaataagc cctgtaagaa tgatacctaa catcacaaga taaaagaaaa aataagttac
    21361 aaattgcaaa ggattataaa ccccttttaa atgcggatgt tttcctaaga aaatgtaaaa
    21421 ttttacttgt tctatccata atttgatatt aaaaatatcc catacacttc tgcgttcttt
    21481 tgcgcttacc ttatcgcaga aaaacaaata tactttaaaa ataatacaag cgattaaaac
    21541 aaaacccacc gcttgatgca ctaagcggta ttttgcttgc ataaaattta cgggttcgcc
    21601 gttgctaata ggactttgaa acacataaga aagataatat cctgtgccaa taagaatcac
    21661 tatagcaata gctcttaccc agtgcgttaa acgcaaacct atgctaaatt catattcagc
    21721 ttttctttgc aatttttctt ctttgttttg catgaaagcc tccttataga ttgacattca
    21781 ctttatattc gcttagatta ttgcccttag catccattac atgcaccgca caagcaatac
    21841 aaggatcata agagtgaatt tttctaatga tttcaagtgg ttgttttaca tcagcgattt
    21901 taagtcctat caaacattgc tcataacttc cacctatgcc atttgcgtct tttggacttg
    21961 cattccaagt agaaggcact acagcttgcc agttttcaat gacgccattt ttaattctac
    22021 accaatggct taatgttccg cgtggcacat gccccatata gcgtccttta tattctttag
    22081 aattatcaat cacataagga gcacaagtac tctgatctac ttttaaattt tcaactaaat
    22141 tattaaacgc ttttaaagca ttatttgcaa cgatttttgc ttcaatacaa cgcgcagctg
    22201 ttcttccaag tgtgctaaat acagcattta aaggaagtcc tgtttctttt aagaactcat
    22261 ctactacagg aacaacattt ggattaccct tagcataatt tacaacgata tttgctaaag
    22321 gtcctacttg catagggttt ccttcatagc gtggagcttt aatccaacta tatttaccct
    22381 tagtatcaaa cactttagaa tggacattat ttccatgatg atctacgctt tctccatcta
    22441 caagtcctgt ataatttgga tttgttttgc catcataagg atgtaaaggt tcattgtctg
    22501 cataccaaga atgagttgcc tcttcggtaa tcttatcttc ttctacttca taaaccttgc
    22561 ttaaatctcc atttttgata ataccacttt caaaaagcca ttcatctctt ccgatttgaa
    22621 attctttaaa ggtgtaaaga ttatttaccc ctatatcatt taaaacactt gcttcatgtg
    22681 cataagcttt tcctgccatc acaagatcag gataatacgc acgattaaca aagtcttgca
    22741 cttcttggaa tttaaccata tattcaccca ttcttgcagg atcaagtaaa tccataacgc
    22801 aagttacacc accaacagtt aagctttgtg gatgtgggtt tttagctcca aaaatcgcca
    22861 tacattgagc aatgattctt tgaattctta aacattctag atagtgagaa agaacaatta
    22921 aattttgctc aggagttaaa cgataagttg gatgaccata gtacgcatta gcaaaaggtc
    22981 ctaaatttcc tttatctaca aaagttttaa gtctttgttg cacttcaaga agtttatctg
    23041 cacctgttgc ataaggattt gaagtgtatt taaaagcttc atcgcttgct tttttaacat
    23101 cagcacttaa agcacttacc acatcagccc aatcaagccc atgaagttga taaaaatgca
    23161 caatatgatc gtgtaaaaat aaagctgcat tcattaaagt tcttgttaaa agcgcattta
    23221 aaggcggagt aatacctaaa gcattttcaa cagcaactat acctgcttta taatgtgaaa
    23281 aagtacaaac tccacaaatt ctttgtgtca taaaacccgc atctcttgga tcacgccctt
    23341 ttactatggt ttcaatacca cgccacaaag tagagcccgc ataagcttct tttaccacat
    23401 tattatcatc aacaacaact tcaactctta aatgcccttc aattcttgta ataggatcta
    23461 cgattatttt ttgactcatt tttattcctt atctttttgc atggaagata tcactgcgtg
    23521 tgctgctata gcaacgcctg taagtgtaag cacacctatg ccgattttat ctgaaacact
    23581 atccgcaccc aagccaaaaa cagtatcaaa tttacgacta gccataggct cttcaaaagg
    23641 ccccatagta tcccaaaaat caggctcaga acaacctata caaccatgtc ctgcttgaat
    23701 aggccaagaa gtgtgctggt taaatctctc tcttgagcag ttattaaaag tataaggccc
    23761 tttacaacct actttataaa gacaaaaacc ttgttttgct ccttcatctc caaaagcatg
    23821 tacaaactca cccgcatcaa aatgtccgcg tctttcacaa agatcatgaa ttcttagacc
    23881 ataagcccat tttggtctat tatacacatc aagtgctggt aactcaccaa ataataaata
    23941 atgaagcaca ttacccacta tatttttttc acttggagga cagcctggaa cattgatcac
    24001 agttttgctt gttactttgc ttaaaggctg tgcgttacta ggatttggtc ttgcggcttg
    24061 gattcctcca aagctagaac aggttcctat agcaaaaatt gccaaagcat tttcacttgc
    24121 catttttgag agctcatagc ctgtttttcc atgtgcacct atggttaaaa aatgctctgt
    24181 atcacccata gggataccac cttcaaccat taaaatgtat ttatttttat gcttttgaat
    24241 ggcactttct aaattttctt cagcttgcca acctgctgca gccatcactg tttcgtgata
    24301 ttctaaagaa atataatcaa aaatcaaact atcaatcgtt ggagtatcac ttcttaacaa
    24361 actctcgcta cagcctgtac actcagccat atgaagccac acaacaggaa gcctatcagc
    24421 aagctcagca gcttttgcca ccataggagt aaaactcgct ggcaaagcca aaaatgcagt
    24481 catagcacct gcccatttca taaaatccct tctagaaaaa cctgactttt ctaatgcttt
    24541 tgtaatacta tcattgtctt tcaaagaagg aagcttttca agagccgata aacgcgactc
    24601 tatttgatga taatcaatca ttatatttcc tttataacat gaaatttatt ctctataata
    24661 ataaaataaa ggaagttaaa ataaagttaa aaacttactc tcataagcaa atattagtat
    24721 tactcttaat taaagcttaa tcataagcct tttttgagtt ttcgaatcaa aaatcttgca
    24781 gggtgaatag cgtggatgta ttttttttct aaatacaagg gttcattatt tatcaatgca
    24841 cacaaatacc ttgccgctaa aacacttgtg ctaaaacccc ttgatccatg agcaaaatta
    24901 aaatacaaat tacaagatat tttagctagc ttttgctcct tgttttttgt ccataataaa
    24961 gctttatatt cttctttata aaacacttca tcataggcat ttccaactat cataaagcga
    25021 tcactcgaat aagatctaaa gcctacctta gaacctatga tttctaattt tgtattttta
    25081 tctataaatt cggctatatt ttctatattt tgtttatcat cttct
//
LOCUS       DAEBKH010000004        24754 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.004, whole genome shotgun sequence.
ACCESSION   DAEBKH010000004 DAEBKH010000000
VERSION     DAEBKH010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24754)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24754)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24754
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.004"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(166..513)
                     /locus_tag="KIL20_000104"
     CDS             complement(166..513)
                     /locus_tag="KIL20_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720175.1"
                     /translation="MKKSILFASALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGTPATPNTQAIPV
                     ARKIEIQCYKKAY"
     gene            complement(577..1182)
                     /locus_tag="KIL20_000105"
     CDS             complement(577..1182)
                     /locus_tag="KIL20_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720176.1"
                     /translation="MFYLNKILYFVLILFLLIGIWGFFLNSNPSNQIIKKPHLPSLEI
                     GDLVFRAGIGSESFLIENLSQSPYSHIAMVVKTSPTMLIHVTTDDDKNAKNQVILSSM
                     DDFLKLSHKIAIKRLKFDEKTKQNIVTKALEHLGRKFIISTDKDAFYCTTFLEQSINS
                     ITPFHLQYTLIKAPFNEGLYLFPQTFFENNQSVLIYESQNF"
     gene            complement(1166..1507)
                     /locus_tag="KIL20_000106"
     CDS             complement(1166..1507)
                     /locus_tag="KIL20_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
                     /protein_id="HBD2720177.1"
                     /translation="MACGSSNPEDLAKNFTKDLYSGDAKSVMSYIDLSEAKSDEEKTF
                     VSGKITQVVAENAAKAKRMGGVKDIQIEEKTINEDSAKIRVLVLFNNDNNQSSNVFLA
                     KKDGKWLVLLK"
     gene            1753..3099
                     /locus_tag="KIL20_000107"
     CDS             1753..3099
                     /locus_tag="KIL20_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate transporter"
                     /protein_id="HBD2720178.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LEQLGFGVGAALGVKGGVFDIKTLVAFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANVYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLGIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIIPSYICFM
                     IGLAIILPLNYPNLKTAKKVLDRASGGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFSAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            3283..5280
                     /locus_tag="KIL20_000108"
     CDS             3283..5280
                     /locus_tag="KIL20_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HBD2720179.1"
                     /translation="MMYKKQNLPELTLRGLILGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRAMVVESKLAYPEGRAAAEILKVANKDQSNKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSAKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDTSSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILRRTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKFIVMQYLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            5354..6157
                     /locus_tag="KIL20_000109"
     CDS             5354..6157
                     /locus_tag="KIL20_000109"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HBD2720180.1"
                     /translation="MENLNALILGIIEGLTEFLPVSSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAAGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVFILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLGFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLSNANSLIPLGIGFITAFV
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFVFFYLYYSGILNAGSEFKL"
     gene            6289..8097
                     /locus_tag="KIL20_000110"
     CDS             6289..8097
                     /locus_tag="KIL20_000110"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HBD2720181.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKNLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHILYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEVATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRTAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            8094..8612
                     /locus_tag="KIL20_000111"
     CDS             8094..8612
                     /locus_tag="KIL20_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HBD2720182.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            8651..9742
                     /locus_tag="KIL20_000112"
     CDS             8651..9742
                     /locus_tag="KIL20_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HBD2720183.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNKGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKHYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDASMLAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKPKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            9782..13407
                     /gene="vvfC"
                     /locus_tag="KIL20_000113"
                     /pseudo
     CDS             9782..13407
                     /gene="vvfC"
                     /locus_tag="KIL20_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter serine protease VvfC"
     gene            13488..14516
                     /locus_tag="KIL20_000114"
     CDS             13488..14516
                     /locus_tag="KIL20_000114"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HBD2720184.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHEFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFSSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYNLALHRHTPEIEEHLSY
                     AAKKKITLQFTPHLVSMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            14526..14972
                     /locus_tag="KIL20_000115"
     CDS             14526..14972
                     /locus_tag="KIL20_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HBD2720185.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVIDEEIVGSILCGHDGRTGGFYHVCVHKDHRKKGIAHEMTKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            14976..15821
                     /gene="argB"
                     /locus_tag="KIL20_000116"
     CDS             14976..15821
                     /gene="argB"
                     /locus_tag="KIL20_000116"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HBD2720186.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATTEVASMVL
                     NHINKNLVHSLQNLGVKVIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDEDFNTYNINADDVACAIAKALRAEKLAFLTDTAGLYEDFSDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            15825..17012
                     /locus_tag="KIL20_000117"
     CDS             15825..17012
                     /locus_tag="KIL20_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HBD2720187.1"
                     /translation="MKMDYKEQSHIVPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGIKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEVGDHG
                     STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGF
                     MQGLSLDKSVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(17032..17661)
                     /locus_tag="KIL20_000118"
     CDS             complement(17032..17661)
                     /locus_tag="KIL20_000118"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HBD2720188.1"
                     /translation="MNTFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            17750..18298
                     /locus_tag="KIL20_000119"
     CDS             17750..18298
                     /locus_tag="KIL20_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HBD2720189.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDKKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDSALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNNEEI
                     NFLKQSALNYVDFKNEFLKDLQ"
     gene            complement(18267..19640)
                     /locus_tag="KIL20_000120"
     CDS             complement(18267..19640)
                     /locus_tag="KIL20_000120"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HBD2720190.1"
                     /translation="MMTSKTSLALLCDFYEFTMSQGYFKNNKKNQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLTNFKFKGEIYAMRE
                     GEVIFPNEPLLCVKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQEGGVRIDSGNLLKLSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLELVYKEKRLLKKSSLNTIQDYTKEQISKLDESFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(19627..20649)
                     /locus_tag="KIL20_000121"
     CDS             complement(19627..20649)
                     /locus_tag="KIL20_000121"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HBD2720191.1"
                     /translation="MQRKRIYNPNSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(20652..21074)
                     /locus_tag="KIL20_000122"
     CDS             complement(20652..21074)
                     /locus_tag="KIL20_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HBD2720192.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYIPILYLFYFLLGSKEAFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKSIKKG"
     gene            complement(21075..21683)
                     /gene="pyrE"
                     /locus_tag="KIL20_000123"
     CDS             complement(21075..21683)
                     /gene="pyrE"
                     /locus_tag="KIL20_000123"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HBD2720193.1"
                     /translation="MNLEQIYKDCGAYLEGHFLLSSGKHSQFYLQSAKVLEDPKLAAK
                     LCDELAKIITSYKIEFDSICSPALGGILAGYELARACSKRFVFTERVNKEMTLRRGFE
                     VKKSEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            complement(21686..22249)
                     /gene="frr"
                     /locus_tag="KIL20_000124"
     CDS             complement(21686..22249)
                     /gene="frr"
                     /locus_tag="KIL20_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HBD2720194.1"
                     /translation="MIMLNEIFNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDTYTTKIDESVKNKESELLKV"
     gene            complement(22259..22630)
                     /gene="secG"
                     /locus_tag="KIL20_000125"
     CDS             complement(22259..22630)
                     /gene="secG"
                     /locus_tag="KIL20_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HBD2720195.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPAT
                     PNTNSIAPSAPQLPSDVNSSK"
     gene            complement(22734..23429)
                     /locus_tag="KIL20_000126"
     CDS             complement(22734..23429)
                     /locus_tag="KIL20_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HBD2720196.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            23589..24224
                     /locus_tag="KIL20_000127"
     CDS             23589..24224
                     /locus_tag="KIL20_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HBD2720197.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRVGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            24221..>24754
                     /locus_tag="KIL20_000128"
     CDS             24221..>24754
                     /locus_tag="KIL20_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HBD2720198.1"
                     /translation="MKKIIFSLCFFILYLGAQEFKFIDANISKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKS"
BASE COUNT         8477 a         3159 c         4433 g         8685 t
ORIGIN      
        1 aacaaaaaac aataaaaatc cattttttca ttatttgcct tagatgaaaa tataagtgtt
       61 attttataaa ttgcttgtta aaaaagagtt taaattttta tttaagagtg atgaagtagt
      121 ttagtaaaga atgattttta taaatccctt gttaagggat ttatattaat aagctttttt
      181 ataacattga atttcaattt ttctagctac tggaatagcc tgagtatttg gtgtagcagg
      241 tgttccataa gaaattttac tttctaaaaa atttccaacc tgtaaatctt taaaagttcc
      301 atctttatct gttccaaaaa taccacaatc atccatttct atttcggtat ttggtagaac
      361 ttttatagcc atttgtccgc cataaataga gtcaataagc aaggttttat tgttatcata
      421 aatttgtgca atagtacctt caagttttag actatctgca aaaagcattg agctagctaa
      481 aagtgctgat gcgaataaaa tacttttttt cataattatt tctccttaat gtaaagtgat
      541 gacattataa aatttttaag tgaagtgaat gtgaaattaa aaattttgac tttcataaat
      601 taatacgctt tgattatttt caaaaaaagt ttgtggaaaa agatataaac cttcattaaa
      661 aggagctttg attagagtgt attgaagatg aaatggggta atggagttaa tagattgttc
      721 taaaaaagta gtgcagtaaa aagcatcttt atctgtactt atgataaatt ttctgcctaa
      781 atgttccaaa gctttagtaa ctatattttg tttggttttt tcatcaaatt ttaatctttt
      841 aatagcaatt ttatgactca gttttaaaaa atcatccata gagcttaaga taacttggtt
      901 tttagcgttt ttgtcatcat ctgttgtaac atgtatgagc atagttggag aagttttaac
      961 taccatagcg atatgagaat aagggctttg acttaaattt tctattaaaa aactttcact
     1021 tcctattcct gcacgaaaga caagatcgcc tatttcaaga gaaggtagat ggggtttttt
     1081 gatgatttga tttgaaggat tggaatttag aaagaaaccc caaattccaa tcaataaaaa
     1141 taaaattaag acaaaatata aaattttatt taagtaaaac aagccatttt ccatcttttt
     1201 tagcaagaaa aacattgctg ctttgattat tatcattgtt aaataacact aaaactctga
     1261 ttttagcaga atcttcattg attgtttttt cttcaatttg aatatcttta acaccaccca
     1321 ttctttttgc tttggctgca ttttcagcaa caacttgagt gattttacca ctaacaaatg
     1381 ttttttcttc atcactttta gcttcgctaa gatcaatgta actcataaca gatttagcat
     1441 caccactgta aagatctttt gtaaaatttt tagctaaatc ttcaggattt gaagaaccgc
     1501 aagccactat aaaaaaaggc aactaaaacc aagaaagaaa gtttgaaaaa tttcattttt
     1561 ttcctttgat agtataaatt aaaatattca taattatagc aaaataattc aaaattattt
     1621 ttttattctt gtttaaaatg gttacattag aaaatatatt tttttcaaaa agctataaat
     1681 ttaaacacat ataagttgga cttaaaatat cctattttat tatcgaataa aaatgataca
     1741 aaaggatagg atatggaaat ttttttagct ttattaggtt ttttctcgtt aggattgata
     1801 gtttggcttt tgctaaaaga ttatactact ccagcattag cttttataag tgtaagtatt
     1861 agtgtagctt gtattttact tattcttgaa caacttggtt ttggcgtggg tgcagcttta
     1921 ggggttaaag gaggtgtttt tgatattaaa acattggttg cttttattaa agatggagtc
     1981 aaaagcgtaa cggatacggc agctttgttt gttttttcta tactcttttt cagtgtttta
     2041 aatgcaagtg gtttttttac taaaatttta aatgcatttt tatcaaaaat gaaagctaat
     2101 gtatatcaag tttgcattct tactgttttt attgctgctg ctgtgcattt agatggttca
     2161 ggtgcttcta cttttcttat tgtaatacct gcattattac ctatttatga gcgtttaggt
     2221 ataagaaaga cttcaatgtt attgattatt acttcggcta tgggggttat gaatgttatt
     2281 ccttggggtg gtcctacttt aagagcggct actaatatag gaatggatgc aaatttgctt
     2341 tggcaccata ttatacctat tcagattgta ggtttggtat tatcccttct tttggcaatt
     2401 tggattgcta agatagaaat aaaaagaggt gcaggcgcag gtaacttgtc tggaataaat
     2461 ttaaatatag aaaaaagcga acaccataat gaaaaatggt tttggttaaa tttacttgta
     2521 gctattgggg ttattgggct tttaattagc ggcattattc ctagttatat ttgctttatg
     2581 ataggacttg caataatttt accgcttaat tatcctaatt taaaaacagc taaaaaagtt
     2641 ttagatcgtg caagtggtgg tgcaatgctt atgtatatta ctttaattgg tgctgggata
     2701 ttaataggcg tatttgataa aagtggtatt atggagaaaa tgggtgtttt gattttaaat
     2761 tttgttccag attatttagg cgcttatatt cctttgatgg tagggatatt ggctgttcca
     2821 atggcaatta ttttttgtac agattcttat ttttatggag tgatgcctat agttttgagt
     2881 gtaactaagg cttttagtgc tgaacctttg actatagcta ttatcatggt gatagcaaga
     2941 aattgtgcga catttatttc tcctgttgtg cctgcaactt tgctaggttg tggtttagca
     3001 gaggttaata ttaaagatca tatcaaaaga agcttttttt atatatgggg tataagtatt
     3061 atttgcttga tttttgctga ggtagctggg ataatataat taaaataaaa gaacttttga
     3121 tttttcaatg attggttcat tgttttatga tatttttgag tcaaaaattt ataaaaatat
     3181 aagcgttttt ttgtattatt ttattttact ttagagaaaa attataaatt taaacttata
     3241 agaatatttt ttaagttgaa agtaaaattt taaaacggag aaatgatgta caaaaaacaa
     3301 aatttaccag aacttacctt aaggggtttg attttgggaa gtattttaac tattattttt
     3361 acagcttcaa atgtatattt ggggttaaaa gtgggactta ctttttcatc atcaattcca
     3421 gctgtggtca tctccatggc ggttttgagt ctttttaaga cttcaaatat tttagaaaat
     3481 aatatggttc aaactcaagc ttcagcagca ggaactttat catcagttat ttttgttatc
     3541 ccagggcttt ttatgtgtgg gtattggagt gaatttccac tttggcaaac ttttatgata
     3601 tgtctttgtg gtggtggact tggagtgctt tttactatac cattaagaag ggctatggtg
     3661 gttgaaagta aacttgctta tcctgagggt agagccgcag ctgaaatttt aaaagtagcc
     3721 aataaagatc agagtaataa aaaaggaaaa caaggcatta aagaaatagc attaggctct
     3781 tttatagctg ctatttttag tttattaagc aatggtttta aactcgctgc aagtgagagt
     3841 aattttgctt ttatttggaa taaaatggct tttggttttt ctatgggata ttctttggca
     3901 cttttaggag caggttattt agttggttta gcaggtgcta tagctctttt tgtaggtatg
     3961 tttttagctt ggggtatttt tactccctat ctttcaaatt ttgaatttga tagtgcaaaa
     4021 aatgccgtag atttagcttc tagtgtatgg agttctaaag taaggcttat aggaacagga
     4081 gctattgcta tagcagcgct ttggacttta atagaacttt taaaacccgt tattgaaggt
     4141 attaaagaaa ttgttaaaaa tgttaaaatt actaatcaag aaaaaaatga aagaacaaat
     4201 atagaccttt ctttaaaaag tatttttata ctttttgttt taatggttgt gggtttattt
     4261 attacttttt atagttttgt tgaagatgct aacttaagta tttattatca aatgctattt
     4321 tcatttgttg gaactttagt ttctgtttta ataggttttt ttgttgcagc agcttgcgga
     4381 tatatggcag gacttgtagg atcttcttct agtcctattt ctggaatcgg acttattggt
     4441 gttattattt cttctattgt ttttttggtt ttaggtgtgg aactttttca agatcctatg
     4501 ctttctaaat ttgcagtagc attagctatt tttactacta gtgttatttt ggctacagct
     4561 gctatttcga atgataattt acaagattta aagacaggac atttagtcgg agctactcct
     4621 tggaagcaac aagttgcttt acttgtaggc tgtgtttttg gtgctttggc tatagttcct
     4681 gttttaaatt tgctttatca agcctatggt tttgttggag caatgccaag agaaggtatg
     4741 gatacttcat cggctttagc agcaccgcaa gcgaatttaa tgagtactat cgctcaagga
     4801 atttttcatc acaatataga gtggggttat atggcttttg gtgtatttgt aggaatttta
     4861 atgattatta tagataaaat tttaagaaga acacagaaaa tgtctttgcc gcctttagcc
     4921 gttggaatag gtatttacct tccgcctgct gtaaatatac ctttagttat aggcggaatt
     4981 ttaaaattta ttgtaatgca atacttgact aaaaaatatg caaaaaattc tcataaagaa
     5041 gaaaaacttg caagttgtga gcaaagaggc acgctttttg cttcagggct tatagtgggt
     5101 gaaagtattt ttggggtaat tatcgcagga attactgtat tttcagtaag tatgggtggt
     5161 agtgaaaatc ctttagcttt aaatttagca aattttcatg atagcgagct tttcgcactt
     5221 atcttttttg tgggagttgt attatatttt attaagcgta ttgttaaaaa agatgcttaa
     5281 tttttggggt taaaacccca tttaatccat tctgatataa tttttctttt gcaattatca
     5341 ttcaaggatt aaaatggaaa atttaaatgc tttaatactt ggaattatag aaggtctgac
     5401 tgagttttta cctgtttctt caacaggaca tatgatttta ggtacgacta ttttaggtat
     5461 tgatatagat gagttttgga aaagtttttt gattatcatc cagcttggtt ctattttggc
     5521 ggtaattttt gtattttggc gtaaattgtt tcaagggctt gatatttggt taaaacttgc
     5581 agcgggattt tttcctactg gagttatagg gctttttgtg gcaaaatact taaatgcttt
     5641 atttaatggt tgggttgtgg ttggaatgct catttttggt ggtgttgtgt ttattcttat
     5701 agaacttgcg cacaaaaata aacaatatcg tatcaattcc ttagaagaaa taagctttaa
     5761 acaagctttt tgtataggta tttttcaatc tttagccatg attcctggca cttcaaggag
     5821 tggagcaagt attattggtg ggcttttgtt aggatttaat agaaaagtgg ctgctgagtt
     5881 tagttttttg cttgccattc caacgatgat tattgctaca gcttatagta tttataaaga
     5941 gcctgaatta ctgagtaatg caaattcttt aattccttta ggcataggtt ttatcactgc
     6001 ttttgttgtt gcggttttag ttataaaatt tttcttaaaa tttatttcta aattcgactt
     6061 tatccctttt ggaatttatc gtattatttt aggatttgtt ttcttttatt tgtattatag
     6121 tgggatttta aatgctggaa gtgaatttaa gctataaata aatattaaac ttattctaag
     6181 atttttttta aaaataagct gaatttcaaa aataattaag tcttagaaag ttaaaattag
     6241 aactttataa acactcacag ggtaagtgag cgacaaaggg ttaaaaatat ggaaaaagaa
     6301 gttattgcgt atttggacaa tgagacaata attgactctc aaagtgtgaa aaatacaaat
     6361 ttaaaagaaa tttattttga taattctaaa gaaagtttag aggtaatccg tcattcttgt
     6421 gcgcatttaa tggcacaggc gattaagaat ttgtatcctg aagctaaatt tttcgttggt
     6481 cctgttatag aagatggatt ttattatgat tttcgtgtag aaagtaagat tggcgaagaa
     6541 gatttagtaa aaattgaaaa aaagatgaaa gaacttgctg aagcaaagat tgaaatttca
     6601 aaatatgaaa tcacaaaaaa cgaagctttg gctaaatttc aaaatgatga tttaaaacaa
     6661 gaagttttat tgcgtattcc tgatggagct gtaagtattt ataaacaagg tgaatttgaa
     6721 gatttgtgtc gtggtcctca tgtgccaaat acgaaatttt tacgcttttt taaactcact
     6781 cgtgttgcag gagcgtattt gggtggcgat gaaaaaagag aaatgcttac tcgaatttat
     6841 gggactgctt ttgcagataa ggaaagttta aaagagtatt taaccattat tgaagaagct
     6901 aaaaaacgcg atcatagaaa gcttggaaca gagcttaaac tttttacttt tgatgatgag
     6961 atcggaggtg gtcttcctat ctggttgagt aatggtgcaa gacttagatc taaacttgaa
     7021 catatacttt ataagatcca tcgtttgcgt ggttatgagc ctgtgcgtgg acctgagctt
     7081 ttaaaagcag atgcatggaa aatcagtggg cattatgcaa actataaaga aaatatgtat
     7141 tttacacaaa ttgatgaaca agaatatggt attaagccta tgaactgtgt ggggcatatt
     7201 aaaatttatc aaagtgatgt aagaagttat cgtgatttgc ctttgaaatt ttttgaatat
     7261 ggcgtggtgc atcgtcatga aaaaagtggg gttttgcacg gactttttag agtgagagaa
     7321 ttcactcaag atgatgcaca tattttttgt atgccaagtc agattaaaga gcaggtttta
     7381 gaaattttag cttttgtgga taatttgatg aaattatttg attttagcta tgagatggaa
     7441 atttcaacta aacctgaaaa agccataggt gatgatgaaa tttgggaagt ggcaactaag
     7501 gctttaaaag aagctttaga tgaacaaggt ttaaaatacg gtattgatga aggtggcggg
     7561 gctttttatg ggccaaagat cgatattaaa atcaccgatg ccttaaaaag aaagtggcaa
     7621 tgtggaacta tacaagtaga ttttaaccta ccaagtcgtt ttaaactcga atatactgat
     7681 agtgataatg aaaaaaaaca acctgtaatg ttgcatcgtg cgattttagg ttcttttgaa
     7741 agatttatag gaattttaac cgagcattgt gcgggtgagt ttccattttt tatcgcacca
     7801 actgcggtgg gtatagtgcc aataggcgaa gcacatattg cttacgcaaa agaaattcaa
     7861 aaagaattat tagagcttaa tatcgatagc gaggtgtatg aaaaaaatga gagtttaagt
     7921 aagaaaatac gcacagctga aaaacaaaaa ttacctatga ttttagtttt aggcgatgat
     7981 gaggtggcaa agcgtagcgt tgctttaaga gatagaagag ctaaagaaca aaaaaatctt
     8041 agcttagatg aatttattaa attagttaag gagaaaatga gtgaggtaca cttttgagta
     8101 aagaaaaaga agtattgctc aatgaagaaa taagagcgga tgaaatcaga tgtgttggcg
     8161 atgatggcaa ggtttatggt attattagta gtgatgaagc tttagaaatt gcaaatcgtt
     8221 taggacttga tcttgtaatg atagctgcag atgctaagcc acctgtttgc aagatcatgg
     8281 actatggtaa attccgttat caacaagaga aaaaacaaaa agaagcaaag aaaaaacaaa
     8341 aagtgattga tataaaagaa atcaaacttt ctgtaaaaat tgctcaaaat gatattaact
     8401 acaaggtaaa acatgcttta gaatttttag aacaaggtaa acatgtgaga tttcgtgtgt
     8461 tcttaaaagg acgtgaaatg gcaactcctg aagcaggtgt agctttgctt gaaaaaattt
     8521 ggactatgat agaaaatgaa gctaatcgtg acaaagagcc aaattttgaa ggtcgttatg
     8581 taaatatgct tgtaactcca aaaaaagctt aatccacttt tgtggataag gcttttaaag
     8641 gttttaaatt ttgaaagaaa atccttcttt tttaaaagag caaattataa cttatcttgg
     8701 aaataaaaga gcgcttttaa gttttttaaa taagggcttt aaggtagcta aaaaagaact
     8761 tggtaaagat aaatttagtt tttgtgatat atttagtggc tcaggtgttg taagtcgttt
     8821 tgcaaaagcg cactcaaatt atattttagc caatgattta gaggattatt caaaactcat
     8881 caatgagtgt tatcttgcca ataaagacaa agatttactt caaaatataa aaaagcatta
     8941 taaaaattta atccaaaatt tagattttca aaaaggtttt atcagtgagc tttatgctcc
     9001 aaaagatgat gatgatatta aaaaaaatga aagggttttt tatactttta aaaatgcttt
     9061 atatcttgat actataaggc aaaaaatcga aaatgaaatt ccaaaagaat tgaggcattt
     9121 ctttatagct cctttgattt atgaagccag tgttcattca aatactagtg gagtttttaa
     9181 aggtttttat aagggtaagg atggcatcgg aaaatttggt ggcgaaggac aaaatgcact
     9241 taaacgaatt aaaggagaaa tagagcttaa aatgcctatt ttttcaaatt tttcttgtga
     9301 atttgaagtg atgcaaaagg atgcaagtat gcttgcaaaa gaacttgatt tttttgatgt
     9361 agtgtatctt gatccccctt ataatcaaca cccttatagt tctaattatt ttatgctaaa
     9421 tttaatcgca aattataaaa aacctgaaga aatttctaaa atcagtggca ttccaaaaga
     9481 ttggaaccgt agcactttta ataagccaaa atttgcccaa gatgctttat ttgaacttat
     9541 taatgattta aaagcaagag tgattttact ttcttataat tgtgaaggtt ttgtaaaaaa
     9601 agaaattttt ttaaagcgtt taagtactct tggaaaatgt cggattttag aacaaaaata
     9661 taatactttt agagcttctc gcaatcttaa aaatcgtaat atccatcttc atgaacaact
     9721 ttatatttta gttaaaaatt aaattttgtg ctaaaattat atttataaaa aggagggatt
     9781 tatgaaacta aaattatctt tttgtgcatt aatggcattt ggtttttcta attatctttt
     9841 tgcttcggcc attgatccaa agttttattt tcaagaatat cttgattttg ctagcaataa
     9901 gggtaaattt caagtaggtc aaattggctt tgaaatttta gcaaaaaatc ctaatcaaaa
     9961 catctctttc aatgtaccta tgattgattt ttctacttca aatcgtggag gaaaattcca
    10021 aggagaattt accaatatag gacaatctta tatagtcagt gcttctcata tgagtacaag
    10081 ttcaaatact ggggaagtaa ataaaggcta tgtgaaacaa ggtagtgttt tacactttgg
    10141 aggtgtagca aatagaatcg taagctcaag tgataatttt acttataaga aagaaaatgt
    10201 ggattttgct gttttaaaaa tgagtaagat caatctcaat aaaagtgcaa atttgagtaa
    10261 agatttcaat tttattgaaa aagattctgg cgatggtgga gatatttatg aatacaagga
    10321 tcctttttgg gatagttgtc aaagtggaaa atgtgattat tctaaaggca aaggcaagct
    10381 ttttgatagt tcgcgttatg agtactttgt aagagaggga agtggtattg tagctttagg
    10441 ttttgaagat acaaataaag tacccattaa gatttttgat tctaatgaaa ttaatttagg
    10501 aggttttgtc agtttagctc ctaaaaatac tgaagataag cgttttaagt tgcaatttct
    10561 taattatacc aatgataaaa gaaatccttt tacaagttct tcaacacctg gggattctgg
    10621 aagtggagtt tatgtttatg ataagattga taaaaaatgg tatttagtag gtgtagtaag
    10681 tacgagtaat tgtaatgccc attttactga tggatatact tgttcacagg ttgattatgc
    10741 tttgatcaat caagcaaaga tcaatgaatt tcaaaatagc catagggtta atatcgcaca
    10801 aggcgtttat actttaagca atcaaggttt gatgaaagaa gggcagttgg tgcaaggtgt
    10861 tagcttaatt tctggggcta atgcgggtta tgtaagttat gaaaatattt ttggtgataa
    10921 ggctaaatat gatgatagaa tcaaagaaat gcaaaatagc aaggatttgt atttttttca
    10981 aaatggaagt ataaatttaa atagcgatgt ggatttaggc gctagtgttt taaattttga
    11041 acaaaattca aattggcaaa taacaggcga taaatggctt atacatggag gaatttacgc
    11101 tgataagggt tcaagtatag aatataatgt taaaaccaaa aaagatgatt ttctttataa
    11161 aatgggcgaa ggagaactta ttgtcaaaag tcaaagtgcg gatgcaggac ttaggatggg
    11221 tgagggtaag gtaagtcttg agggtgaagg tttaagtttt ggtgaaattt atatgaatgg
    11281 tggaacttta gggtttaaaa acgcacaaaa tttaaaaacc gacactttat atatgaatgg
    11341 tggaactttg gatctatcgg gcttaacatt aaatttttga tcaaattaaa gccaattcta
    11401 ataatgtttt tatcacaagc tctaaagcag gggcaaattt aaatttagaa aacaagcaaa
    11461 attatcttta ttatggcaat attttttcag atgaggccat aacaattagt gctaatacag
    11521 ataaagcttt gatttttgat ggcaatattt acaataaaga aggtgttttt aaggcagaaa
    11581 acgccaagtt aaattttcaa ggacatgcta gaatacacgc ttatgtaagc gaagaacaag
    11641 ctaaaaaact tcaagagcaa ggtttaagtg ctttaaccaa acctgtaagt tttacacaag
    11701 aagattggga agatagggtt ttttgtttta aaagagctta atttagaaaa aagcgagttt
    11761 tatttaggac gtaatgcaag cttaaaagta gaaaatctta atgctaaaaa ttccaaaata
    11821 gagcttggaa gtaaaaattt gtggatcgat gaaaaagatg gggaaaatat cactgataaa
    11881 gttcaagata gtttttatgg agacgttgca caaacaggag ttggtaaaga aatgggattt
    11941 gagcaaaatc ttaaaaatac ccaaaatgct aagatagaaa aggtttattt tagtggaaat
    12001 ttaaatcttg atcattctga tgctacttta caaaacatag tttttagcgg taatattaaa
    12061 ggtgttgatg atgcacaaaa aaatcttgtg attaaagatt ctttgcttga gtctaatata
    12121 caaatgagta atattcaagc agaaaaaagt gccatttatg ggaaagttga tgcaaaaaaa
    12181 ttaagtgcaa ataatacaat atttaaaatc aatgtggatt ttgaaaaatc taaggcagat
    12241 tatattaatt ctaaggaaag cgcgcaagga acaaataata ctttagtatt aaatttttta
    12301 acaatcctag caaagaagcg ggtttaaata tattactagc tcatttaaaa gatgaaaata
    12361 aacatttaac aaaggaattt tttactatac caaatgtgga gcaaggtttt agtatttata
    12421 ccccaaatgt tgttttttct tacaatgagg aaaattttgc ccagtggaat ttagaaaaaa
    12481 ttgattctaa aactaaagat gagtattttt ttactaatga taatactcaa gctattgcaa
    12541 aagctaaatc tatacttgct caagctactt tgggctccat gatagaatgg aataatatgc
    12601 ataaaagaat gggagaatta cgcaataatc cttacgaaag tggggtgtgg ttaagaactt
    12661 ttggtggggg tacgagtgat gagtataata gtggaaaata ctttgaaatt caaagcggat
    12721 atgataaatt aaacgagtat tcgaatttcg agctttatag cggggtgatg atcaattata
    12781 caaatatgaa tttaagtgct actgatttga gtgcgaaatt aaatggttat ggaataggac
    12841 aatattttag ccttttgttt aatgaaggtt tttatagtga ttttgtttta gatatattta
    12901 ttatcaaaat gaaataaatg caaattttat tccaggaaat caaggtagat tagatgataa
    12961 tgatggttcg cataatatta tcttaagtgc tgagttaggt tatagaaaag cttataataa
    13021 attttatctt gagccgagtt tggaatttat cagtggttat gtaggagcta tggatctaaa
    13081 aggagatatt gctagtttaa aacgattttc ttatattcct ttagtcgtaa aaacagcatt
    13141 tttcatagga agtcaaaatt aaaatttaaa ttttagaaca ggacttggtt tgtatgcgga
    13201 tccgattaaa gcaggagatc aaatcttgga ggatcaagca agtcagagaa gatatgaagg
    13261 aaaaaagatc aaagaatgtt tataaattta ggaaatgatt ataagcttaa cgataaaaca
    13321 cgctttagtt ttgaatttga aaagacattt tttggcgatt taaatgtaga ttggagtgca
    13381 aatgctaatt taagatatag tttttaaata aaaaataatt taaaaattgt atttttattt
    13441 taagcttttt tgtttataat acttgctttt acatttaaag gatagagatg aaaataaaag
    13501 ttgggatttt aggagcgagt ggttatgcgg gaaatgaact tgttcgcatt ttgcttaatc
    13561 atcccaaggt tgaaatttct tatttgggtt cgagttctag cgtggggcaa aattatcaag
    13621 atctttatcc taacacccct ttaaatttat gttttgaaaa taaaaattta gatgaacttg
    13681 aacttgatct tttgtttttg gctactccgc atgaatttag tgctaaactt ttaaatgaga
    13741 atttattaaa aaagatgaaa atcattgatt taagcgcgga ttttcgtctt aaaaatccta
    13801 aagattatga gctttggtat aaattcactc atcctaatca agagcttttg caaaatgcgg
    13861 tttatggact ttgtgagctt tataaagaag agataaaaaa agcaagttta gtggcaaatc
    13921 caggttgtta taccacttgt tctatcttaa gtctttatcc gctttttaaa gaaaagatca
    13981 ttgattttag ctcagttatt attgatgcaa aaagtggagt aagtggagca ggaagaagtg
    14041 caaaggtgga aaatcttttt tgtgaagtta atgaaaatat caaagcttat aatttagctt
    14101 tgcatcgcca tactcctgaa attgaagagc atttaagcta tgcagccaaa aagaaaatca
    14161 ctctacaatt tacccctcat cttgtgtcta tgcaaagagg aattttaatc agtgcttatg
    14221 caaatttaaa agaggatttg caagaacaag atatacgcga tatttataca aaatactatc
    14281 aaaacaataa attcataagg cttttaccgc cgcagtcgct tccgcagact cggtgggtta
    14341 aatcaagcaa ttttgcggat ataaatttta gtgtagatca acgcacaaag cgtgttattg
    14401 tgcttggtgc tattgataat ttaatcaaag gtgcagcagg acaagctgtt caaaatatga
    14461 atttaatgtt tgattttgat gaagatgaag gacttaaatt ctttgcaaat ttgtaaagga
    14521 taaaaatgtt aatacgagct atgcaaaaaa gcgattatga agccgtttat aagctttggt
    14581 gtgagataaa aggctttggg ataagaagca ttgatgatag taaagaaaat atagaaaatt
    14641 ttttagatag aaacccaaat cttagcgttg tagcagtgat tgatgaagaa attgtaggaa
    14701 gtatactttg cgggcatgat ggacgcacag gaggatttta tcatgtatgt gtacataaag
    14761 atcatagaaa aaagggcata gcgcacgaga tgacaaaatt ttgtcttgag gctttaaaag
    14821 ctcaaaaaat caataaaatc gccttaatcg cttttaaaaa caatgattta ggcaatgagt
    14881 tttggaaaca ttatggtttt actttaagag aagatgcgaa ttattacgat ctttctttaa
    14941 atgagtataa tcaaactagc tttaatgctt aaggaatgat catgcaaaaa tatttagaaa
    15001 aagctaatgt cttaatcgaa gctttgcctt atatacgcaa atttaattct aagattatac
    15061 ttataaaata cggcggatca gctatggaaa atgaagagct aaagcattgt gtgatgcaag
    15121 atatagctct tttaaaactc gtgggtttaa agcctattat tgtacatggt gggggaaaag
    15181 atatttctgc tatgtgtgaa aaattaggcg taaagagtga gtttaaaaac ggtcttaggg
    15241 ttagtgataa agccactact gaagtagcca gcatggtttt aaatcatatc aataaaaatt
    15301 tagtccatag tttgcaaaat ttaggagtta aagtcatagg gctttgtggt aaagatggcg
    15361 cgcttttaga atgtgtgaaa aaagatgaaa atttagcttt tgttggcacg atacaaaagg
    15421 taaattcgaa aattttagaa gagcttttag agaaagattt tttacctatc attgctccta
    15481 ttggcatgga tgaggatttt aatacttata atattaacgc tgatgacgta gcttgtgcga
    15541 tcgccaaggc tttaagggct gaaaaacttg cttttttaac cgatactgca gggctttatg
    15601 aggattttag tgataaaaat tctttgattt ctaaaattag ccttgaacaa gctaaaattt
    15661 tagcccccaa aatagaaggt ggtatgcatg taaaattaaa atcctgtatt gatgcttgtg
    15721 aaaatggagt caaaaaggtg catattttag atggacgcgt gaagcattct ttattgcttg
    15781 agttttttac tgatgaaggt ataggcactt tggtgggtta aaggatgaaa atggattata
    15841 aagaacaaag tcatattgtc cctacttata agcgttttga tatagtttta gaaaaagggc
    15901 agggggttta tctttttgat gataaggcta aaaaatatct tgatttttca agtggtatag
    15961 gtgtttgtgc tttaggatat aatcatgcta aatttaatgc taaaatcaaa gctcaagtgg
    16021 ataaactttt acatactagc aatttatatt ataatgaaaa catagccgct gcagctaaaa
    16081 atttagccaa agctagtgct ttagagcgtg ttttttttac aaattctggt acagaaagta
    16141 tagaaggagc gatgaaaaca gctagaaaat acgcctttaa caaaggtatt aagggtggac
    16201 aatttatcgc ttttaagcat tcttttcatg ggcgtacttt aggggcttta tcgcttactg
    16261 ctaatgaaaa atatcaaaag ccttttaaac ctttaatttc aggggttaaa tttgcaaaat
    16321 ataatgatat ttcaagcgtt gaaaaactgg tgaatgaaaa aacttgtgcc attatcttag
    16381 aaagcgtgca aggagaaggt ggaataaatc ctgcaaataa agatttttac aaagccttaa
    16441 gaaagctttg cgatgaaaaa gatatattat taatcgctga tgaaattcaa tgtggcatgg
    16501 gtagaagtgg aaaatttttt gcctatgagc acgcgcaaat tttgcctgat atcatgactt
    16561 cagctaaggc cttaggttgt gggcttagtg tgggtgcttt tgtaataaat caaaaggtag
    16621 caagcaattc tttagaagta ggcgatcatg gtagtactta tggtggaaat cctttagttt
    16681 gtgcaggagt gaatgcagtt tttgaaattt ttaaagaaga aaaaatttta gaaaatgtca
    16741 ataaactcac gccttattta gagcaaagtt tagatgagtt gataaatgaa tttgattttt
    16801 gtaaaaaacg caaaggctta gggtttatgc aagggctgag tcttgataaa agtgtaaaag
    16861 tagctaaggt cattcaaaaa tgtcaagaaa atgcactttt attaataagt tgcggggaga
    16921 atgatttgag atttttacct cctttgattt tacaaaaaga acatattgat gaaatgagtg
    16981 aaaagttaag aaaggctcta aagagttttt aataaatttt gtaaaaaaat tttattcttt
    17041 tccatctact ataggcacaa ataaacattc ttctaaaatt tctttttgta aatttgtgcc
    17101 attttttcta aggcgtgtga tgaattgttt gccattgtgt aaaataggag cgactaaaat
    17161 accgtcatcg cttaattgat caagtaaaat ttcaggaatt tgtgtcgcat aagcagaaaa
    17221 taaaatccta tcataaggag cataattttt ccagccattt tgtccatcat caaattttac
    17281 attgatatta aaaagttcta attctctgaa agtttgagcg gcttttttgg ctaaattttc
    17341 tatgcgttct atggtaaaaa cacgccttat gactttgctt aaaatcgcag cttgatagcc
    17401 acttccacaa cctatctcta aaatactatc agcattttta aaatctaaag ccatagtcat
    17461 tttagctaca gttaaaggtg aactaatcca ttgagaattt gctaaaggca aagcatcaag
    17521 gcgataagca tgggctttta aaggagaaaa aatttcacgt ggaatttgac aaaaagcatt
    17581 aaaaagttct tcattgataa aaactttttg tgcaatttct tcagccatat tttgacatct
    17641 tttttgttca aatgtgttca ttacttctcc tataaattta aataaaaatt gtaactaaaa
    17701 aagttgaaat agagttaaac ttagctatac ttaaataaaa aggaaaaaaa tgcttataaa
    17761 atttaaaaat catagtccca aactaggtca aaatgttttt gttgcagagg gcgctaaaat
    17821 cataggagaa atagaaatag gagatgaaag tagtatttgg tttaattgtg ttttaagagc
    17881 cgatgttaat tttataaaaa ttggcaaaag aaccaatatt caagatctta gcacggtaca
    17941 tgtttggcat agggaatttg ataaaaaagg aaagttaaaa gatgctggtt ttcctacgat
    18001 aataggagat gatgtaacta taggacataa ttgcgttatc catgcttgtg tgataaaaaa
    18061 tcgtgtttta atcggaatga atgctgttat catggatagt gctttgatag aagaagatag
    18121 catagtgggt gctggaagcg ttgtaacaaa gggtaaaaaa tttccgccac gctctttgat
    18181 acttggaaat cctgcaaaat ttgtgcgtga attaaataat gaagaaataa actttctaaa
    18241 acaatccgct ttaaattatg tggattttaa aaacgagttt ttaaaagatc ttcagtgata
    18301 ttttgaagtt taggcgagag ttttacttca aatttcacaa aacgatcaag atctaaaaaa
    18361 ctctcatcga gttttgaaat ttgctctttt gtataatctt gaatagtatt taaagatgac
    18421 tttttaagaa gtcttttttc tttgtagact aattctaaaa gttctttgcg ttctaaattt
    18481 tcatcttgat ttgggttttc gtcaaaaaca taaagctcat caaaaaggat tttttgcgtg
    18541 tttttatcat aaaccctaaa aagcttttta aaatgaggta gggttgattt ttcgttattt
    18601 tcgctgattt tgattttagg ttttatgcct tgatcttcta aggctgcgag tttataaacg
    18661 caactaaaaa taggatcgct tgaagcagtg atcaatcttt cgcctacacc aaagatatca
    18721 ataggtgcat tttgttcttt gagtttttta atactccatt catcaagggc gttagaaact
    18781 atgattttac atttttgaag tcctgcttga tcaagttctt gtctgatttt caaactcaac
    18841 ttaagtaaat ttccagaatc tattctgaca ccgccttctt ggataccaaa ttctttaaaa
    18901 actttaatcg catttttaag tccgctattt agacaatcat aagtatcgat caaaaaaaca
    18961 ggattttttg gataaatttt cacataagct ttaaaagctt caagttcatt ttcaaacatt
    19021 tgcacccaag aatgtgccat agttccattg atagggatat tataaatttt tcctgctaaa
    19081 gtacaagcac ttcctatgca acctcctata aaagctgctc ttgctccttt taaggctgct
    19141 tcacttcctt gtgctctgcg tgaaccaaat tctaaaattt tactgtcttt agctgcacgc
    19201 acgatacgat tggttttggt agcaataagg ctttggtggt ttaaacttaa aagtaaaaaa
    19261 gtttctaaaa gctgtgcttc tatggttgta gctttaacgc aaagtaaagg ttcgtttgga
    19321 aaaatcactt ctccttcgcg catagcataa atttcaccct taaatttaaa gttagttaaa
    19381 aaatctaaaa attctgtatc aaaaatacct tgttttctta aaaattctat atcttctgca
    19441 tcaaaactca aattttcaac aaagtctaaa atatcttcaa gacctgcaaa aatagcaaaa
    19501 gaacctgaat ctggaatttt tctaaaaaat atatcaaaat aacaaatttg atttttttta
    19561 ttgtttttga aatagccttg agacattgta aattcataaa aatcacaaag taaggctaaa
    19621 gaagttttag aagtcatcaa agcttatact acccttagaa taattcgtta ctttactttc
    19681 aaagaaattg ctcttttgat cgttaaattt tgaaaaatca tctacccatt taataggatg
    19741 ttttgcattg tataacttat ctaaattgat cgcacttaat ctttgatcta caagataatg
    19801 gatatattct tctatgatat catcagtaaa gcccatgatt tgattttgag tgatgtattt
    19861 accccatttg atctcaagat ctccagcttt tttaaacata tcataaattt tattgatatt
    19921 ttcatcatgg aacaaatcag gtctttcttt gcgtactgaa ttgatcatat tttgaaataa
    19981 taaaagatgt gtgatttcat ctctttggat aaagcggatc atttgtgctg aacctagcat
    20041 ttttcctgca cgtgcaagtg cgtaaatggc agtaaaacca ctataaaaat atactccttc
    20101 taaaatttga tttgccacca tagccaaaag aagtttatta tcatctacat cgcctgctaa
    20161 ttcttcataa atgcttgaaa taaagtcatt tttttcacgc aaagtttcat catgcttttc
    20221 catttcataa atcaaatctg tattatcgca aatcgcttca accataacag cgtaagattt
    20281 tgaatggttt gcctcttcat aagcttggcg tgctaaaacc gcattgattt caggagctgt
    20341 gatgtaaggg ttgatattgt ctgctaaatt attggtttga aaactatcca tagaaataag
    20401 ctgactccaa accaaatcat acattctttt ttcacctaca gttaaattac agcgataatc
    20461 aagtgcatct ttagttgtat ccacttcttt tggaaaccaa gtatttgcct ccattaaatc
    20521 ccaaagtttt aaagcccagg tatattttgc cttagtgaaa tttaaaattc catgtgggtt
    20581 accatcaaaa attttacgat ctcctagggt ttcgtttgag tttggattgt aaattctttt
    20641 tctttgcatt tttaaccttt ctttatgctt ttagtagcta tacaactttg agttaaaata
    20701 tcgtgtaaat ttaaacgatc ttttcttaca aaactgacaa ataaaccaaa gagtaagcca
    20761 aaacttataa taaatatcac atatcttagt aaaattctaa gaaaacttag tttctttccc
    20821 gtttttatat caataagata taaatcatat gctttaagac ctgggctttg tgcctttttt
    20881 gttaaaaaaa tagcttgaat caagccaaat aaaaaagtac ataaagttgt gataaaatgg
    20941 ttgtttaaaa aagcttcttt agagcctaat agaaaataaa ataaatacaa aataggaata
    21001 taaataagaa aaatatctat aagcaaagct ctaaatctta gccatctaga gctaattttt
    21061 gctttagttt tcatttaatt tccacgactt cctggtttta tagctttact ccctttttta
    21121 caaagtggac aatttgtttc atcgtaaatt tcaaattcaa aatttcctag agtaaagagt
    21181 ggtaaatttt caggtaattt cgcattatct tttcttggag attttaaatt ttctactgca
    21241 caaaaaccac gatttgccaa tgctgcaaaa cctacaacaa tgccacctaa actttcaatg
    21301 atttttgcac tctctaaagc actaccacct gtagtaatga tatcttcaca aattataaat
    21361 ttttcactct tttttacctc aaaaccacgt cttaaagtca tttctttatt tactctttcg
    21421 gtaaagacaa aacgtttact acaagctctt gcaagctcat aacctgctaa aattccacct
    21481 aaagcaggag aacaaatgct atcaaattct atcttatagc ttgtaataat ctttgcaagt
    21541 tcatcacaaa gttttgctgc taattttgga tcctctaaaa cttttgcact ttgaagataa
    21601 aattgcgaat gtttacctga acttagtaaa aaatgccctt ctaaataagc accacaatct
    21661 ttataaattt gctctaaatt catcgttaaa cctttaaaag ttcactttct ttgtttttta
    21721 cactctcatc aatttttgtt gtataggtgt cggtaagttt ttgcacttca tcataagctt
    21781 tttttgcttc atcttcgctt attgccttat ctttttctag ttttttaact gcatcgttgg
    21841 catctttgcg tatatttctt atagaaactt ttgccttttc acccatagct ttagcttgtt
    21901 ttacattttc ttctctttgc tctctagtca tcggagggaa aaataatttt acactttcgc
    21961 cgtcattgtt tggatttaca ccgatatttg cagctgcaat agcgctttct atggttttta
    22021 gtaaaggttt ttcccaagga gtaatactaa tagttgaagc atcacttgct aaaacagttg
    22081 ctacttgatt taaaggagtt tgagttccat aataatccac tgtaatatga tctaaaatat
    22141 gggtattaac ttttccagtt cttaaagtgg tgaagtcttt ttttaaggct tctaaagatt
    22201 tttcactttg ggttttttgt ttgttaaaaa tttcatttag cattatcatt tcctttaatt
    22261 atttacttga attaacatcg cttggaagtt gtggtgcact tggagcgata gaatttgtgt
    22321 ttggggtagc aggcacaata ggagcacttg gaatagtagt attgttgttt tctactttaa
    22381 ttttctctgc tagagagtct ttgctagctt tattgtataa ataaccaaga ccaatagtat
    22441 ttgcaataag taaaattccc ataacaaagg taaattttgc caaaaatcca gctggtcctt
    22501 tggcgccaaa taaactttca ttgcttccac tataagctcc aagtcctata cttgaacttt
    22561 tttgaagtaa aactgctata caaataacta caacgatgat aaattgtaaa atgattaaaa
    22621 gagtgatcat tgaaaattcc taaaagttaa tttttaaatg attattttag ctaaataaaa
    22681 cttgaaaagt tttgaaactt gaaaagtttt tgtgagaaaa atcccacaaa aatttatctg
    22741 ctattgaagc ttcttaagat attaagtaaa gatacgaaaa gattaacaaa atcaagataa
    22801 agtgctactg caccttcgat tggagtttca taatttccgc ggataatatt ctgcgtatca
    22861 taaagaatgt aaaatgaaaa taatattgca gctactgctg aaatagctag attaactata
    22921 ctgctttgga agaaaaggtt tagtaaagat gctgctacaa taacgatcaa tactataaat
    22981 aaagctttgc ccataacagt aaaatctttt tttgtattca tagcaaatac gctaagtcct
    23041 gcaaaagcaa ccgttgttaa agcaaaagct tgagcgatga taattcctcc agctggtaga
    23101 gctaaaactg aaataagtaa aggtgtaagc gttaaacctg agcagaaagt aaaaccaaaa
    23161 agtaaaacaa gatttaatgg agcctctctt tttttccatt gcaaagcaaa taaaagtccg
    23221 atttcaacag caaaaaggat ccaaaaagtt acttgtgatt gtataaaaaa tgatgctaaa
    23281 gcaaaaattc ctacatacgc acctactgtt gcagctaata atgaagcagc aaaaagttga
    23341 taagtttgtt taataaaaat acttaattcg cttgagcgtg tattttcaaa ttcttttgat
    23401 cttgagtagt ctctatcata aagactcata aaattctcct tgcaaaattg ttagattttt
    23461 taaaatcttg agcgaaatct aacatattag actaaataaa aagttaattt atataatatc
    23521 ttatgcttaa atgaaatctt tgctgaaatt ttgttataat ttcaagattt tagtttcagg
    23581 ttggttttat ggaaaatctt attagcggtg cgattaagtt tatgcaagaa gactttaagg
    23641 agcatgaaga actttttgaa agtctaaaaa ataagcaaaa tccccatact ctttttatag
    23701 gttgttctga ttctagagta attccaaatt tgatcactaa tacgggtcca ggtgagcttt
    23761 ttgtaatacg aaatattgca aatatagttc caccttatcg cgttggagaa gattacttgg
    23821 cgacaacttc agcaatagag tatgctttaa attcattgca tattaaaaat atcgtcgttt
    23881 gtggccatag taattgtgga ggttgcaatg ctctttatta ttctgatgaa gagttaaata
    23941 aaattcctaa cgtgaaaaaa tggcttacta tgttagatcc gataaaaaaa gatgtgatga
    24001 tttttgcaag agacgatttg gctatgcgtt catggcttac agaaaaatta aatttagtaa
    24061 attctttgca aaatatactt acttatccag gcgtgcaaga agctttagat gaaggaaaaa
    24121 tagaagtaca tgcttggtat tatattatag agacaggtga aatttatgag tatgatttta
    24181 aagcaaaaat ttttacttta atacaggata ggaaagttca atgaaaaaaa ttatttttag
    24241 tttatgtttt tttattttat accttggagc acaagaattt aaatttattg atgcaaatat
    24301 tagcaaagag gatgaaggaa tttatgcttt agttgaaaaa tatgttgatc ttaacaatca
    24361 aattaaagaa tttaagaaaa acaatgatga aaattcaagc acttttaatg gtattttaag
    24421 tgaatttgaa aaagacaaaa agactatttt agcaaaaata cccgatatga tagtaggaca
    24481 aaagattaat gaagaggcag tggctagatt tttaaaagca aaagaaaaat tactagatgt
    24541 tcaaaaaaag aatattaata agccttatat ttatacagat gctactctta atctagttta
    24601 ttttaatatt gtggaaagtt tttattcttc tttgtttgaa gtggaaaaac tttttaaaaa
    24661 tacagcaagc agtgaagatt tgattgctac tgttgataag gcaatggaaa atttacaaaa
    24721 ttcttctaat gttaatttag atagttttaa aagc
//
LOCUS       DAEBKH010000005        24743 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.005, whole genome shotgun sequence.
ACCESSION   DAEBKH010000005 DAEBKH010000000
VERSION     DAEBKH010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24743
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.005"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            31..933
                     /gene="mltG"
                     /locus_tag="KIL20_000129"
     CDS             31..933
                     /gene="mltG"
                     /locus_tag="KIL20_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HBD2720199.1"
                     /translation="MIFILGIFYYLTQPLKSNSVVFIPQGSISQIITYLKQNKYQMSS
                     IDKYILFFLGHPQSGWINIGTKDLNRAEFLHKLTIAKAALQTITLIPGETSVIFLEQA
                     AKQLELDKDMLLKEFQAQAPYDEGVFLPETYKIPKGITENLLIQMLLNHAEISNKKTS
                     EKIFGDYNPKKWHQYIIIASVIQKEAANDNEMPIVASVIYNRLKKGMKLQMDGTLNYG
                     IYSHVKVTPQRIRQDNSSYNTYKFTGLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDK
                     NTGVHIFSTNIDDHNKAINLQKGK"
     gene            1013..1444
                     /gene="flgB"
                     /locus_tag="KIL20_000130"
     CDS             1013..1444
                     /gene="flgB"
                     /locus_tag="KIL20_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HBD2720200.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDNKELQLAVTEEGHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            1454..1948
                     /gene="flgC"
                     /locus_tag="KIL20_000131"
     CDS             1454..1948
                     /gene="flgC"
                     /locus_tag="KIL20_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HBD2720201.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            1955..2251
                     /gene="fliE"
                     /locus_tag="KIL20_000132"
     CDS             1955..2251
                     /gene="fliE"
                     /locus_tag="KIL20_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HBD2720202.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEIDDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            2258..4066
                     /locus_tag="KIL20_000133"
     CDS             2258..4066
                     /locus_tag="KIL20_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HBD2720203.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDECLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNNQTSTNN"
     gene            complement(4063..5832)
                     /locus_tag="KIL20_000134"
     CDS             complement(4063..5832)
                     /locus_tag="KIL20_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi symporter"
                     /protein_id="HBD2720204.1"
                     /translation="MQEERNSLKYFKFISWSIFTLVLIFILIRYDELANLLAGVAILL
                     IGMTNLGIGFKAFSGGLLEKILAKSTDTKIKSILFGTLSTLIMQSSTLVSIITISFLS
                     AGLISLGAGIGIIFGANLGNTASSWLIVGLTNIKISMLAIPLLIIGVLFFFQKDSVLK
                     GLGNIFIGIGFFFLGVDYIKSGFENFKHIIDLSRFDFAGFKGVFVFLGLGALLTGVIQ
                     SSTATMAIIVAALLAGQISLENSLAATLGTSVGGVVTAVLASLSTNIEGKKLAFANCI
                     FNFGIAFLIVLIFPYFIHFLNFLSIVLNIEDIALKVALFHTLFNLIGVVLFSFFTPQI
                     VLFLNKIVKAPKDKNKDKPLYLDSSLVKFSDTAIKALRKESEHLYNNTYAIVAHAIGF
                     SRKDIQSDKSFKEILENKKWFSKNVDLDYLYQTRIKVLFEAIIDFSTKAQVYINDETK
                     NHKIFTFKMAAKNLAETTKNLKIIQANIKKYSSSSNEFLALEYNKIRSNLGELLRSIE
                     ELRVVEDREKLYLIIKNLQKGKEILKEIDTLTLGNVEHLISVRKITTAEGISILNDTT
                     FAAKIAEELIGAVEVIFSKDISN"
     gene            complement(5836..6270)
                     /locus_tag="KIL20_000135"
     CDS             complement(5836..6270)
                     /locus_tag="KIL20_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720205.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDEQTLLEPIKMDIYPKF
                     CDLIDEKIREFKENVQNANLALKNSDQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMNEFEKLKG"
     gene            complement(6270..6587)
                     /locus_tag="KIL20_000136"
     CDS             complement(6270..6587)
                     /locus_tag="KIL20_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HBD2720206.1"
                     /translation="MIENIPASLWTKQDLNAYQIFDVRTPLEWEEGILPNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAERLGLESINLDGGMLAL
                     KGY"
     gene            complement(6584..8410)
                     /gene="htpG"
                     /locus_tag="KIL20_000137"
     CDS             complement(6584..8410)
                     /gene="htpG"
                     /locus_tag="KIL20_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HBD2720207.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEINDANK
                     EEQGTSITLYLKDDEFANTYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKVEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVAINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIINKAFS"
     gene            complement(8483..8851)
                     /gene="crcB"
                     /locus_tag="KIL20_000138"
     CDS             complement(8483..8851)
                     /gene="crcB"
                     /locus_tag="KIL20_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HBD2720208.1"
                     /translation="MLNTLLVVGFGGFIGAILRMFSINLVNKFFPYSISLGTLFVNVL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYLHFALN
                     IILNVFLCLFAAWLGFIIFK"
     gene            complement(8845..9537)
                     /locus_tag="KIL20_000139"
     CDS             complement(8845..9537)
                     /locus_tag="KIL20_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HBD2720209.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVVFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSVKILDTKSFSASSGVLKIICMDLVDTNDDKWLENTRKKM
                     QELLDQERAKLC"
     gene            complement(9518..10714)
                     /locus_tag="KIL20_000140"
     CDS             complement(9518..10714)
                     /locus_tag="KIL20_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HBD2720210.1"
                     /translation="MKILLTLIFSVVVLFGRGEISVFGGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNDEYPSRVYVGEVFPITIYARTTENTKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLSNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKDSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYTLWFLAVLFGALFVWRKNYIILALAVVCFALSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(10711..11358)
                     /gene="purQ"
                     /locus_tag="KIL20_000141"
     CDS             complement(10711..11358)
                     /gene="purQ"
                     /locus_tag="KIL20_000141"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HBD2720211.1"
                     /translation="MKVAIIRFPGTNCEFDTAYAFEKLGVKTQIVWHEEKEFDTDLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQNLRVVSNDNAFLKNFKKDEIINLPIAHGEGNYYADEATLKELQDKDL
                     ITLKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDIGLKMLKGFLF"
     gene            complement(11360..11605)
                     /gene="purS"
                     /locus_tag="KIL20_000142"
     CDS             complement(11360..11605)
                     /gene="purS"
                     /locus_tag="KIL20_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HBD2720212.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSIIEDYELVIEKE"
     gene            complement(11614..12324)
                     /locus_tag="KIL20_000143"
     CDS             complement(11614..12324)
                     /locus_tag="KIL20_000143"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HBD2720213.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(12326..13660)
                     /locus_tag="KIL20_000144"
     CDS             complement(12326..13660)
                     /locus_tag="KIL20_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HBD2720214.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISDLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            13778..14068
                     /locus_tag="KIL20_000145"
     CDS             13778..14068
                     /locus_tag="KIL20_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HBD2720215.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKVVLKEHLAHCMVHAVEENDIQSIEELNKAIDMFMK"
     gene            14180..16753
                     /locus_tag="KIL20_000146"
     CDS             14180..16753
                     /locus_tag="KIL20_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HBD2720216.1"
                     /translation="MANIQNFLTDNMLSNLESAASLAIHSKNNEVAPLHLLWALSVDS
                     TSILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLVSESQKSPTKEILAQFLDLREFQKELESLRAGRKIDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDVV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(16781..18712)
                     /locus_tag="KIL20_000147"
     CDS             complement(16781..18712)
                     /locus_tag="KIL20_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HBD2720217.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYVAYLFTSADTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPERTITRKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTASLGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDTAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKANMKFNESEIIF"
     gene            complement(18709..19260)
                     /gene="maf"
                     /locus_tag="KIL20_000148"
     CDS             complement(18709..19260)
                     /gene="maf"
                     /locus_tag="KIL20_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HBD2720218.1"
                     /translation="MLILASSSISRANLLKTAKIDFRQVSFDYDENLDKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKAKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITHQVGNLSTALGLDIQTLKAYL"
     gene            complement(19260..21788)
                     /gene="alaS"
                     /locus_tag="KIL20_000149"
     CDS             complement(19260..21788)
                     /gene="alaS"
                     /locus_tag="KIL20_000149"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HBD2720219.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEFLKLPKDRLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGEEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELLMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDAGWVMLKNTPFYATSGGQSADSGFMAKREVL
                     DTQKFFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALSKEELENIEKRVNEMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGIKKLKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDVPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKINEALKQSLETIEKAL"
     gene            21903..22976
                     /locus_tag="KIL20_000150"
     CDS             21903..22976
                     /locus_tag="KIL20_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HBD2720220.1"
                     /translation="MNFINLQAQYLAYKDEINAEIESVLSSSSFIGGAKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRALDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFEAVQKAITPKTKAVIAVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQTYNANLKNCQIPQIDPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            22981..23847
                     /locus_tag="KIL20_000151"
     CDS             22981..23847
                     /locus_tag="KIL20_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HBD2720221.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNQNNDIIIIATPTNSHLAIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSVKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQANHLASTSD
                     AYKVQEILERFA"
     gene            23844..>24743
                     /locus_tag="KIL20_000152"
     CDS             23844..>24743
                     /locus_tag="KIL20_000152"
                     /EC_number="4.99.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HBD2720222.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCNKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNESDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLISCPNDSDEFMEFILNSIN"
BASE COUNT         8728 a         4068 c         3516 g         8431 t
ORIGIN      
        1 aaaattttct ttttcatacg caacttcttt ttgatattta ttttggggat tttttattat
       61 ctaactcagc ctttaaaaag caattctgtg gtatttattc cccaaggttc aatttctcaa
      121 attataacat atttaaagca aaataaatat cagatgagta gtattgataa atatatttta
      181 ttttttttag gacaccctca atcaggctgg atcaacatag gtacaaaaga tttaaatagg
      241 gctgaatttc tacataaact cactattgct aaagcagcgc ttcaaaccat tactcttatc
      301 ccaggagaaa caagcgtaat ctttttagaa caagcagcca aacaacttga acttgataaa
      361 gatatgcttt taaaagaatt tcaagctcaa gctccttatg atgaaggagt ttttttacca
      421 gaaacttata aaatcccaaa aggcattaca gaaaatctac tcatccaaat gcttttaaac
      481 catgctgaaa tttccaataa aaaaacttct gagaaaattt ttggtgacta taatccaaaa
      541 aaatggcacc aatatatcat catcgcttct gtaatacaaa aagaagctgc taatgacaat
      601 gaaatgccta tagttgcaag cgtaatttat aatcgactta aaaaaggtat gaagcttcaa
      661 atggatggaa ctttaaatta tggaatttac tcccatgtaa aagttacccc acaaagaata
      721 agacaagata atagctctta taatacctat aaatttacag gattgcctaa agaagcggtt
      781 tgtaatgttt ctttagctgc tattcgtgca gctatttttc ctttaaagac agattattta
      841 tattttgtgc gtgataaaaa tactggagtt catattttta gcacaaatat agatgatcac
      901 aataaagcca taaatttaca aaaaggaaaa taattttgat atttttatac aaaatagtta
      961 aattggaaca gtatttgctt gttaatatta aaaattataa aaaggataaa aaatgattaa
     1021 cccatttaaa tcaaaagaac tggtcactgg tgctttagcg ggtagaaatc taagaaatca
     1081 actcatcaat gccaatcttg caaatgttga tactcctttt tataaagcaa gagatattga
     1141 atttgaaaca gctttggtaa atcgtgcaaa tgaaattttc aaaaaaaatg ataataaaga
     1201 attgcaatta gccgtaactg aagaagggca tcaaaaacct tggaaattcc ctgatcctag
     1261 taaatctact atttacttaa gagatggtca tttagcaaga aatgatgcaa atactgttga
     1321 tctagatgta gaaaccacag aaatgagtaa aaatacagtt atgataacag ctcttgatgg
     1381 agttttaaga agacaaagca atatctttag ttctatactt gatgcaagct ctaaattaag
     1441 ttaaaggtaa attatggcat acttaagtga ttttgatatt agtggttatg gtttaagtgc
     1501 tcaacgtttc agaatgaatg ttattagctc taatatagct aatgcaaaca ctacaagaac
     1561 agctgaaggt gggccttata gaagacgcga agtgatcttt aaagcaacag attttgataa
     1621 gcttttaaat gagcaaatta acaaagataa taatttttta aaatatgaaa atcctttaaa
     1681 tgatccaagt tcgccagaag aagctaaacc tgctattcaa agtgttgtag tggataaagt
     1741 ggtcagagat gacaaagatt ttcgtatgaa gtatgatcca agccatcctg atgcaaatgc
     1801 tgaaggttat gtagcgtatc caaatgtaaa ccctgtcatt gaaatggcag atttgattga
     1861 agctacaaga gcttatcaag ccaatgtaag cgcttttaca agtgcaaaaa ctatagctca
     1921 aagtgcgatt gatttattaa gaggataata aaaaatgaac aatattaatg atttaagatt
     1981 aaataataat atttcaaata ccaacaaaag tcaaaattcc acaggaattg gtgatgaatt
     2041 tgccaagatg cttaaaaatg aaatcgatga tttaaacaaa gcacaagaaa gtggagaagc
     2101 tgcaatgaca gacattgcca caggacaagt aaaagattta catcaagcag ctatagctat
     2161 cactaaagct gaaagcagta tgaaatttat gctagaagta agaaataaag cgatcagtgc
     2221 ttataaagaa atcacaagaa ctcaaattta aaccctaatg caagaatata aaaaaaatag
     2281 ggtttcaaaa gttgcctttg cctactgcat ggcacttttg tttatgatta tttttatcag
     2341 ctctactttt tttcttacat caaaacgtca tatacctaac actgaaaaag atcaatacgc
     2401 tcttgctcta agaggatcga ttataaccaa agataatttt actatcacaa gttctaaaca
     2461 aatttatcgc gctgaaattg atcttagaag cattaacaaa gataaatttg atctattttt
     2521 aaagcttttt caaatttata gtggaataag taacgatcaa gtagcagata ttaaaaaaag
     2581 aatgcaaaat caaaaaaaac gctcttataa ttttgttctt ttgcaaaact tagattccaa
     2641 gcaagcaagc tatcttaaag accttgctaa aaaactttat atacaaggtt ttttcaaagc
     2701 ttttacaaac aactctggaa gagttgaaac aagaggatta aatatcatcg aacatgaaga
     2761 agatagaatt tacatgtcaa aagattcttt tactcctatt atcggttata ccaaaatgat
     2821 attagatcca gaaagtggaa ttttaaaaaa tataggagtt aaaggtttag aaaaatacta
     2881 cgatgaatgt ctaagccctg ttcaaaatga aaaaattcaa ggacttaaag atataggtgg
     2941 aaatattatt ttaaatctaa attcactaca acaaaaaaag atcaatggtt gtgatttata
     3001 tttaaatctt tctttaaaac tgcaaaaaag tatagagaaa gctatagatc aaagaaatga
     3061 ggatttaaaa gccaatgaaa tcatagttgg agtaatggaa agcaaaacag gaagaatttt
     3121 agctctagca agctcaaggc gctatgatcc gcaaaatcgt ggaaaagatc tatcagttct
     3181 taatgcaagc gctatagaat acggttatga agcaggttct gttatcaaac cttttatctt
     3241 tacaacagcc ttaagacttg gtaaaataaa aatggatgaa gtgattaata cttatggcgg
     3301 ttcttacaag ctaggacgtt ttaccatcaa agacgatcac aaaatggaca aaatgactat
     3361 ggaggaagtt ataagatatt cttcaaatat aggcatgata caaattgcca aaagacttaa
     3421 caatatagaa atcgtatcag gacttaaaat atttaaattt ggcgaaaaaa gtggtattga
     3481 tctaccctat gaacaaaaag gagaaattcc aaatcctaag cgcttaagag atatagaaaa
     3541 atctgtttta agttatggtt atggacttaa aacaaccttt atacaactcc ttgcagctta
     3601 taatgttttc aacaatgatg ggttttatat cacaccacgt ttagctgaaa aattctatca
     3661 aaatggacgc tttacaaatc ttgatgatga tgtaaaaaaa gaaaaaattc tttctagcga
     3721 agccgctaaa acgatgcaaa atgttcttat aaatgttata gaaaaaggaa caggaaaaaa
     3781 ggcaattaca caaggtatta ttgcaggagg taaaacagga acggcaagaa tagccgaaag
     3841 acaaggttat acctcaaatc gctacaatgc atcctttttt ggttttgcaa atgatttaaa
     3901 tcacgcctat accataggag ttctcgtaag acatcctact aaaccttata gttattatgc
     3961 tgcacaaagt gctttgccta tgtttaaaga tgttgttgat attttaatca atgaagaatt
     4021 tctaacgcct atacaagaca ataaccaaac tagcacaaac aactagtttg atatatcttt
     4081 agaaaatatc acctcaacag cacctataag ttcttcagca atcttagcag caaaagttgt
     4141 atcattaagt attgaaattc cttcagctgt tgtgattttt cttactgaaa taagatgttc
     4201 aacattgccc aaggttaaag tatcaatttc ttttaaaatt tcttttcctt tttgaagatt
     4261 tttaataatc aaataaagct tttcacgatc ttcaaccact ctaagctctt cgatacttct
     4321 taaaagctct cctaaattcg atctaatttt attgtactct aaagccaaaa attcattaga
     4381 agaactagaa tatttcttaa tatttgcttg gataattttt aaatttttag ttgtttcggc
     4441 taaattttta gctgccatct taaaggtaaa aattttatga ttctttgttt catcgttaat
     4501 ataaacttgt gctttagttg aaaaatcgat aatagcttca aaaagaacct ttatcctagt
     4561 ttgatacaaa tagtccaaat ccacattttt actaaaccac tttttatttt ctaaaatttc
     4621 tttaaaactt ttatcacttt gtatatcttt acgactaaaa cctatagcat gagcaacaat
     4681 tgcataggta ttgttataaa gatgctcgct ttctttcctt aaagctttga tggctgtgtc
     4741 actaaactta accaaactac tatcaagata taaaggcttg tctttattct tatctttagg
     4801 agcttttact atcttattta aaaaaagaac aatttgagga gtaaagaatg aaaaaagcac
     4861 aacaccaatt aaattaaaca aagtgtgaaa taatgctact ttcaaagcta tatcttctat
     4921 gtttaataca atggataaaa aattaagaaa atgtataaaa taaggaaaaa taagcactat
     4981 taaaaaagct ataccaaaat taaaaataca atttgcaaac gctaatttct ttccttcaat
     5041 attggtactt aaagaagcta aaacagccgt tacaactcct ccaacactag tacctaaagt
     5101 tgctgctaag gaattttcca aactgatttg tcctgcaagt aaagcagcga caataatagc
     5161 cattgtagct gtgcttgatt gtataactcc tgtaagcaaa gcacctaatc ctaaaaaaac
     5221 aaaaactcct ttaaacccag caaaatcaaa acgagaaaga tcaattatat gtttaaaatt
     5281 ttcaaaacca cttttaatat aatccacacc caaaaagaaa aatcctatac caataaaaat
     5341 attacctaaa ccttttaaaa cactatcttt ttgaaagaaa aataatactc caataatcaa
     5401 aagtgggata gctagcattg aaattttaat atttgtcaaa ccaacaatca gccaagaact
     5461 tgccgtattt cctaaatttg ctccaaaaat aatccctatg cccgcaccca aagaaataag
     5521 ccctgcgctc aaaaaagaaa tcgtaataat agaaactaaa gttgaagatt gcataattaa
     5581 agtacttaaa gtaccaaaaa gtatactttt tatctttgta tcggttgact tcgctaaaat
     5641 tttttcaagc aaaccaccac taaaagcttt aaaacctata cctaaattag tcattccaat
     5701 aagaagtatt gccactcctg ctaaaagatt ggcaagctcg tcataacgaa ttaaaataaa
     5761 aatcagaact aaagtaaaaa tactccatga aataaattta aaatatttta aagaatttct
     5821 ttcctcttgc aatgcctaac cttttagttt ttcaaattca ttcatcagaa attctcttaa
     5881 attttcggct tcttcttcgc ctttttctag atactcaagc aataaatttt ctaattcctt
     5941 taaaaaagaa aaaagttcat tttgccagat actatcgttt ttattgctta aattcatggt
     6001 ttgtatgaaa gtcaactctc tgcttaaatc cccaagtttt tctaaaaatt catctttttg
     6061 atcagaattt tttaatgcta aattagcatt ttggacattt tctttaaatt ctctgatttt
     6121 ttcatcgatt aaatcgcaaa atttcggata aatatccatt ttaataggct ctaaaagggt
     6181 ttgctcatct atatttaaag taagcttttt aacagcaaaa taaagagcta aaaaagacaa
     6241 agctgctatg agtaaataaa ttcctagcat taataaccct taagagctag cattccgcca
     6301 tctaaattga tactttcaag tcccaatctt tcagctataa attcagctgc aaccatgctt
     6361 ctatggccac tacgacaaat aaaagcaagt tttttacttt catctctttt gctttgaaat
     6421 tcatctaaaa atttagcatt taaaagccct tgattatcat ataaagccac acattgcgca
     6481 ttaggtaaaa taccttcttc ccattctaaa ggagtacgca catcaaaaat ttgatatgcg
     6541 tttaaatctt gctttgtcca aagacttgca gggatatttt ctatcatgaa aaagccttat
     6601 tgataatttt tgtaaggctt gcattaaatt cagcaggatt atccactccc ataccttcgc
     6661 ttagttttgc catatttaaa actagggttg ctatatctgc actaaaactt tcgttgtttt
     6721 taagacctgt aaaaatagcg tgttttggat tgatttctaa aataggtttg aaattttgct
     6781 cttgacccat ttgttttaag agttgttgca tagcaaaatc aggtttattt ttatcataaa
     6841 ctatacaact tgggctatct ttcaaacgac tggttaatct tacatcttca acttgatctt
     6901 ttagaagttc tttaaattta gctacaagtg gagcaaaagt atttttttct tcatcactta
     6961 gttcattttt atcttctact tgattaatgg ctacaaattt caaaccttca aattctagca
     7021 taggagttac taaagaatca atctcatcat ccatgagtaa aacttctata tttttttgtt
     7081 tatactcttc aagcaaagga gaggttctta ataaactttc attatttcct gctatataaa
     7141 aaatttcctt ttgttcgcct tgaaggtcat ttttatactc ctctaaagag cgtaaatttt
     7201 cacctttagt gcttttataa agcataagtt ttaaaagact atctttttct ccgccaaaac
     7261 cataaagtcc ttcttttaat accttaccaa aggttttaaa gaaagataag tatttttctt
     7321 tatcattgtt tttgagtttt tcaagttcgc ctaaaatctt tttaacgcta gcttctttaa
     7381 cgccttttaa aatttgattt tcttgtaaaa tttcacgact tacattaagt ggtaaatctt
     7441 ctacatcgat aatcccacgc acaaaacgca aataagttgg taaaagttct ttatcgtcat
     7501 cgctgataaa tacgcgtttt acataaagtt ttaagccgct ttgataatcc acacggaata
     7561 aatcaaaagg tgcattttgt ggtatgaaaa ataaagaatt gtattctaat tttccttcac
     7621 ttttagtgtg aagataaagt aaaggtttgt ttgaatcatg aaaattttgc tcataaaatc
     7681 tttcataatc ttctacttta aggcttgatt tttgcattct ccataaagcg ttggctttat
     7741 tgatttgaga aattttaagt tcagtttttc cttcttcttc gccttcttta gcaggagtaa
     7801 attcttcttt ttccatgaaa attggaaatt gaatatgatt agaatatttt tctataatgc
     7861 tttcgatttt ataagtatta gcaaactcat catcttttaa gtataaagta atgcttgtgc
     7921 cttgttcttc tttgtttgcg tcattaatct cataaccatt tgcatcagaa ctccaaagat
     7981 aagctttatc atctaaagct tttttactta aaacttcgat tttactagcc accataaaag
     8041 cagaataaaa acctactcca aattgtccta tgagttgaga atctttttta gcatcaccac
     8101 ttaaattttc taaaaaactt ttagtaccgc tttttgctat ggttccaagg ttgttaataa
     8161 gatcatcttt atccatacct ataccattat cactaatgct taaagttttt ttatctttgt
     8221 caattttgat ttcaatttta ggttcaaatt ttaagctttt atatttatca tcacttacgc
     8281 tcaaaaaatt aagtttgtct aaagcatcgc ttgcatttga aataagctct cttaaaaaaa
     8341 tttctttatt agaatataaa gaatgtatca taagctgtaa aagctgattg acttcggttt
     8401 gaaattgcat tttaatttcc tttgtaattt tttaaagtgg tattttagca aaaaatacaa
     8461 attctaaagt aaatttaaag atttatttga aaattataaa gccaagccat gcggcaaata
     8521 agcaaagaaa gacatttaag ataatattta acgcaaaatg aagataattt ccactttgca
     8581 aaagaagtaa attttgataa gaaaaagtag aaaaagttgt aaaagctcct aaaaaacctg
     8641 tacttataaa gcttttaagt aaaggagata aacctttatt ttgtgcataa gaaaacaaaa
     8701 gtcctatgat aaaagaaccc aaaacattaa caaaaagagt tccaaggctg atagaataag
     8761 gaaaaaattt attcactaaa tttatagaaa acattcttaa gattgctcct ataaatcccc
     8821 caaaaccaac aactaaaagg gtatttagca aagcttagct ctttcttgat cgagtaattc
     8881 ttgcattttt tttctagtgt tttcaagcca tttgtcatca tttgtatcga ctaaatccat
     8941 acaaatgatt ttaagcactc cgctgcttgc actaaaactt tttgtgtcta aaatttttac
     9001 agaatctaca attaaaatag gttgaacttt aagatttaat ttttcactta aaatttttgc
     9061 tccactttga aatttaagca ttttttcatt tttagatcta gttccttctg gaaaaatagc
     9121 caaaacccta tcttcactaa ttctttcttt tgcttctttt aaaactcgta ctaaatcacg
     9181 cggatttttt ctatctatac aaagaagttt tggttttttc atggcgactt tgaaaatagg
     9241 aatttctcct aattcttttt tggcaatcca gcataaattt ttaggatata attcttctaa
     9301 agcgatgata tctaaagcac tttggtgatt cattaaaatc atctgagctt gtggattaaa
     9361 agtaccaatg atttcttgtt tataagagat agtatatctt tgaaatttag cccaaatttt
     9421 gcggattttc caaagtgtgt tttgagattt tgtaaagcaa aaacaaaaaa ctaccaaagc
     9481 aacgcttaaa acaaaaaaaa tccaaaaata aagagcttta atttttttgt aaatcatctt
     9541 tattaaccca acctattttt ccatcagaaa acagtacttt aatataattt tgtcgtttgc
     9601 ctaaaacttc tactttttca tctgcatttg ccgtataaaa ataagttgaa ggctctgtag
     9661 gtaaaatttt agccctagaa ccagccttga taattgcatt ttgagtattg gtatctacaa
     9721 gaaaactaag tgcaaaacaa acaactgcca aagccagaat aatgtaattt tttctccata
     9781 caaataaagc tccaaataaa accgctaaaa accataaggt atattgttta taaatattta
     9841 agtctttatt tacaggattt aaatcactct gagtgctgat ctcatcgtca ctaattttta
     9901 gttttaaatt tatattttca agctttttac tgtccttatt gaaatacgaa aattcaaaat
     9961 ttgttttact taatggcaaa atagcataat aaaaagcact agaagcatta aaatcccctt
    10021 ttaaattttc aataccttgc ttttgaattc cttctataaa aaagctttta agatttgtat
    10081 tggttgcgtt tagttctacc atcataatga tattagcatc atcaaaataa ctcgctttaa
    10141 cttttttaat ttccaaagaa cttgccacaa ggtgtgaaaa atctttattg gataaagtat
    10201 tttcaaattt gataggatta agattgatat cggcctcttg aaaagcttca ttatttctaa
    10261 gaagtttgat agaaatttta ctcaaactag catttgaatt tttggcttca aaccataaag
    10321 ttgttttata ttcgttattg ataaattccc attttgcatc tggatttaaa aaagataaat
    10381 tagttttttc tacgcttatg ttaaaatcaa attttgtatt ttccgtagtg cgagcataga
    10441 tcgtaatagg aaaaacttct ccaacatata ccctgcttgg atattcatca tttgtaagaa
    10501 ccaaactccc tttagctaca aaaggatcat ctacattgct ttcaaagtca ttgttttcat
    10561 cacttggcgg aatattttga taaatttttt gttcttcttg gggtaatttt tgtaattctt
    10621 tttgcatatt ttcatcttgg ccgccaaata cagaaatttc acccctgcca aacaatacaa
    10681 caacactaaa aattaaagtt aataaaattt tcaaaataaa aagcctttaa gcattttcaa
    10741 acctatatca ttacctagga ctttttcaca agcacgctca ggatgtggca tgagtccaaa
    10801 gatttttttg ttttcatcac aaattcctgc gatatcaaat acagaaccat ttggatttgg
    10861 ctcgtatttt aaagtaataa gatctttatc ttgcaattct tttaaagtag cctcatcagc
    10921 gtaataattt ccctctccat gagcaattgg taaattaata atttcatctt ttttgaaatt
    10981 tttcaaaaag gcattatcat tagaaactac tcttaaattt tggttttttg agataaaact
    11041 aagattgttg ttatgcttca ttgcaccttt taaaagaccg ctttcaagta aaatttgaaa
    11101 accattgcaa atacctaaga tatatcctcc cttttttgca tgattaaaaa caccttgcat
    11161 agcaggagca agttttgcaa tagctgcaca tcttagataa tctccataag aaaatccgcc
    11221 tggcaaaaca actaaatctg tatcaaattc tttttcttca tgccaaacaa tctgcgtttt
    11281 tactccaagt ttttcaaagg cataagctgt atcaaattca caatttgtcc ctggaaatct
    11341 aataatagca actttcattt tactctttct caattacaag ctcataatct tcaatgatgc
    11401 tatttaccaa caactcttca cacatttttt ttacttgttc tttggctaat ttttcatctt
    11461 tctcatcaag agaaattttg atttgttttg ctatttttac ttctttaaca ctattaaaat
    11521 ttaaagaatg caaagctttt tccaccgctt tgccttgtgg atctaaaacc ccatttttta
    11581 aagaaatatt tacaataact tccatatttt tccttaattt aatattcttt ttaaaacttc
    11641 ttcataagcc atttttacat tacctagatc ttgacgaaat ctatctttat ctaatttttc
    11701 attgctaaat ttatcccaaa atctacaact atcagggctt atttcatcag ctaaaacaag
    11761 ttcattatct ttagttaaac ctagttcgat tttaaagtca atcagcctta aatttttatt
    11821 gtcaaaaaat ggagttaaaa tagagttaat ctttctagcc atatttttaa tttcactaat
    11881 ttgagcttca ttttgcacta aatttaaaat caaacaatgc tcatcattga taaaaggatc
    11941 gcctaaagca tcatctttaa gacaaaattc caccaaagca aaaggtagca cagtgccatc
    12001 tttaatgccc agtctttttg taagagaacc tgttgcaaca ttgcgtacta taacttcaat
    12061 aggaacaatt ttacattttt taaccacttg ttctgtatcg cttatagttt ctaccaaatg
    12121 ggttttaatc ccattttttt cgagcaaatg aaaaatttca gtactgattt tacagtttaa
    12181 tgcgcctttt ccactttcat tgcctctttt ttctgcatta aaagcagtta aatcatcttt
    12241 aaactcacta attagtaaat tttcatcatc agttttgaaa agttttttac cttttccttc
    12301 gtagagcatt tctttttttg tcattttatt gtccttgttt gatatttaaa attttaatag
    12361 tatcaatagc tgattttaac tgtgcgtcat cattgatttg tttttgactg attagatttt
    12421 tattgtcttt attttcttgt ttatcttctt ttttattttt atctattttt tcaagctcac
    12481 tttctaaatg ttgttttaag tcgctttctt ttatagaaaa accatcttct tgagtattta
    12541 ctttacctgg aaaaacttca atatcaggtt ttacacccac tgcttgaata gtacgcccgc
    12601 ttggaagata atatcttgca atagtaagcc ttaaagcttc agttttatta ataggtatga
    12661 tttgctgaac actacctttt ccaaaagtat tttcacccac aataacaccg cgtttaagat
    12721 cttgtaaagc tccacttaca atttcacttg cactagcact tccaccattt acaagcacaa
    12781 ccaaagaagc attagaaatt ttgtttttag gatcggcttt atattcttga ttttcacttg
    12841 cgatgcgtcc tttttgagaa acaataacac ctttatctac aaataaattt acaagtccta
    12901 tggcttgatt taaaagtcca ccaggattat ttctaagatc taaaataact cctttaacat
    12961 taggatattt tttaagttct ttacttgcca catctacaac atttttatca aaatttgtaa
    13021 ccctaagata aagaatgttt tcattttcta tcatttttgc ataaacactt tctatcttaa
    13081 taatttctct tgtaagtgta acatcaaaag gttttgttgc accttttcta aaaatggtta
    13141 aagtgatttg agtttttggc ttaccacgca ttttatctac agcatcattg agattaattc
    13201 ctaaagtggc ctcatcatta atttttaaaa taatatctcc tgattttatc cctgctttat
    13261 ctgctggtgt tccttctata ggagaaacaa ctgttaaagc gccatctttc atacctacgg
    13321 ttataccaag gccaccaaat tcgccattgg tttgaatttt catatcatta aaatcttttt
    13381 catttaaaaa agaagaatgc gcatcaagat tgcttaaaag tcctgataaa gatttatcca
    13441 ccaaatcgct gatattttga tcatccacat agtattgctc tactatggca agagtttttg
    13501 taagcttatc taaagcttct aggcgttttt gaacctgctc ttctttttga tcaactttag
    13561 cttgtaaatg acttgttaaa aatagacata aaataaaagt agtggcaaag cctgcaagac
    13621 ccgcaaaaaa tcgttttgtt ttcaaaataa gctccatcat tgagttttag tttaaagagt
    13681 aaattttaat aaaaattgct taaaacttcg taaataaatt taaattctta aaaatatgtt
    13741 aaaatagact aaaaattcca aaaagaaagt taatacaatg tgccaagaaa aacatactca
    13801 tacacattct caaaaacatc ttaaagcagt ttgcaatcgt ctaagtagaa ccatagggca
    13861 tttaagcgct attaaaagaa tggttgaaaa tgacaaagac tgtagtgaaa ttttaatcca
    13921 gcttgctgcc gtaaaagccg aagttaacaa tactgcaaaa gtagttttaa aagaacattt
    13981 agctcattgt atggtacatg ctgtagaaga aaatgatatt caaagtatag aagaattaaa
    14041 caaggctata gatatgttta tgaaataatc taaaattagt catttgtcct attatttaaa
    14101 aaattttact caattaactt gacattatat gactaaagtt atataatagc aagtatataa
    14161 actaaataaa ggataaaaca tggcaaatat acaaaatttt ctaactgata atatgctttc
    14221 aaaccttgaa agcgcagcat ctttagctat acattctaaa aataatgaag ttgcaccttt
    14281 acatctttta tgggctttaa gcgtagatag tacaagtatt ttaaatcaaa ttttaaataa
    14341 attaaatatt tccaaagaag ccttagaact tgaaattaaa agcagaattt caaaacttgc
    14401 aacgagttca aatgtaaacc gtgaaaatat acgcttttcc aatgaactta taaattcatt
    14461 agaaaatgct aaaggattaa tgagtgctaa tggagatagt tatttaagtg tggatacttg
    14521 gcttgtaagt gaaagtcaaa aaagtcctac taaagaaatt ttggcgcaat ttttagattt
    14581 aagagaattt caaaaagagc ttgaaagtct aagagcggga cgcaaaatcg atagcaaaac
    14641 aagcgatgaa accttagaca gcttaaataa atttggtata gatttaacct taaaagcaag
    14701 cgaaggtaaa cttgatcctg ttataggcag agaagaagaa atcgaacgtt taatgcaaat
    14761 tttaatacgc aaaaccaaaa ataaccctat acttttaggt gaaccaggcg taggaaaaac
    14821 agctatagtg gaagctttag cacaaagaat tattaaaaaa gatgttccaa aatctttgca
    14881 aaataaaaaa gttatcgctc ttgacatgag tgctttaatt gcaggtgcaa aatacagagg
    14941 agaatttgaa gacagattaa aagctgtcgt taatgaagtg ataaaaagtg aaaatatcat
    15001 tctttttatc gatgaaattc acactatagt aggagctgga gcgagtgaag gcagtatgga
    15061 tgcggcaaat attttaaaac ctgctcttgc aagaggtgaa ctccatacta taggcgcaac
    15121 tactttaaaa gaatatcgta aatattttga aaaagatgca gccttgcaac gccgttttca
    15181 acctgtaaat gtaggtgagc caagcgttaa tgaggctttg gctatgttaa ggggtataaa
    15241 agaaaagctt gaaattcatc ataatgtaac tataaatgat agcgctttag tagctgcagc
    15301 taaactttca aagcgttata tagcggatcg ttttttacct gataaggcca ttgatttaat
    15361 cgatgaagct gcagctgaac tgaaaatgca aattgaaagc gaaccaagtt ctttaagaaa
    15421 agtacgcaaa gatatagaaa ctttagaagt tgaaaatgaa gctttaaaaa tggaaaatga
    15481 cgagaaaaat caaaaaagac ttgatgaaat cgcaaaagaa ctagccaatt taaaagaaaa
    15541 acaaaatgcc ttaaattcac agtttgaaaa tgaaaaaagt gtttttgatg gcataagtgc
    15601 taagaaaaaa gaaattgatc tgcttaaaaa tgaagcttct ttggctaaag ctagaggtga
    15661 atttcaaaaa gcagccgagc tagagtatgg aaaaattcca agtcttgaaa aagaagtaga
    15721 aattttagaa gataaatgga aaaaaatgag tgaaaatgga gttttactta aaaatcaagt
    15781 ggatgaggat ttggttgctg gaattttaag caaatggacg ggtattagcg tgcaaaaaat
    15841 gttaacttct gaaaaacaaa aattcttaga agtggaaaaa catttaaaag aaagtgtcat
    15901 aggacaagat aaggccttaa gtgctttagc tagagccatt aaacgcaaca aagcaggact
    15961 taatgcggac aataaaccta taggaagctt tttattttta gggccaacag gggtaggaaa
    16021 aacacaatca gctaaagctt tggcaaaatt tttatttgac gatgaaaaag caatgattcg
    16081 ctttgatatg agtgaattta tggaaaaaca tagtgtttca agactcttag gcgcacctcc
    16141 agggtacata ggacatgaag aaggtggaga gcttactgaa gctgtgcgaa gaaaacctta
    16201 tagcgtgctt ttgtttgatg aagttgaaaa agcacataaa gatgtattta atgtgctttt
    16261 agggatttta gatgatggta gagcaaccga tagcaaaggt gtaacagtgg attttaaaaa
    16321 taccattatc attttaactt ctaatattgc ctcaagcgct attatgaatt taagcggaaa
    16381 agaacaagaa gatgtggtaa aaaatgagtt aaaaaatttc tttaaacctg agtttttaaa
    16441 ccgcttagat gatattatca cctttaatcc acttggaaaa gatgaagctt atgaaatagt
    16501 taagctttta tttaaagatt tacaaatgag cttagaaaac aaggggataa aagcgagttt
    16561 aagcgaaaat gcagcccttt taatcgctaa agatggtttt gatcctgatt ttggtgctag
    16621 acctttaaga agagctattt atgatcttat agaagataaa ttaagcgata tgatacttgc
    16681 tgatgaactt catgaaaatg atagcattat cattgatgca aaagatgatg aaataatcat
    16741 caaaaaagct taatcatttt gaaagtagat ctttctactt tcaaaatata atctcgcttt
    16801 cattaaattt catatttgct tttggcaatg gtgatttggt ggtataataa gcactttctc
    16861 ctttataatt tccacgataa accccattag gaatgctaaa ttttctagtt gtatcaggga
    16921 atttttctat atattgagtt aaaaattctc taaacacagg agcagctgtt ctagccccac
    16981 cttctgtata acgcataggc ttgttgttat catttccata ccaaatgatt gcttctattt
    17041 caggcgtaag tccacaaaac caagcatcaa cacttttatt cgttgttcct gtttttcctg
    17101 ctatttctat atcttttact cttgcattgc gtcctgtgcc tttttcaaca acatttctca
    17161 tcatatctaa aaccagaaaa ctttgcgctt catcgctgac tttacgctca tttgagttaa
    17221 attccatgat ggttttaccg gttttatcct gaacttgtct gataatttga ggatctttaa
    17281 tcgtaccata gttcccaaac atggtataaa atttcgaata ctccaaagga gaaataccaa
    17341 aacttcccaa tacgattgat aaattaggcg gtatatcttt aaatccaaat tccattagtt
    17401 tagagtaaag aacatcaagc cccatatcaa gtgcgagatt aatggtagct aaatttcttg
    17461 atcttgttaa agcttctttt aaggtaatta aacctaaaaa tttaccccct tcatttttag
    17521 gtttccaatc ctcattatta cccgctccac cttcaaaaat tctagaaata tcagcaattt
    17581 cactcatagg cgaatatcct aaattaatcg ccacttgata cacaaaaggt ttaaaagagc
    17641 ttccaggttg acgcatactt tgagtagcac ggttataatt acttttttca taatcaaccc
    17701 cacctaccaa agctaaaaca tcgccacttt gatgatttac cacgaccata gctccgttta
    17761 aagtgcttaa atttgcatct ttatcgcgtt ttactatctc atcataacca aatttcaaag
    17821 cattctgcgc catattttga acatctaagt ctatatttaa aatgatttta tatccacctg
    17881 tttttaagtc tttgatatta gggcttaatt gtttaatcac ttcatctacg acataaggag
    17941 cagcattttg agtaagcgta tcatcataaa cttgcggaat ttctttaatg gctgtatcat
    18001 aatctgcttt tgaaatccaa cctagattat acattcttga aataacatta tttgctcttg
    18061 agatggaaag atctaaatgc tttgtaggat cataactgct aggtgctttt ggcataccta
    18121 ctaacatagc aatctcttta aggcttaatt catttaaatt tttatgaaaa taccccaaag
    18181 atgcggtttt tactccataa tacccatgtc caaaaaagat aaaatttaaa tacctttcta
    18241 aaatttgctc tttagttaaa atggtttcca ttttataagc aagcaaagct tcgcgaattt
    18301 tacgcgtaat cgttctttct ggggttaatt ctgtgttttt aataaattgc tgggtaagag
    18361 tggaagctcc ttccatggtt tttccaccgc tttttatgat ttttacagca gctctaaaaa
    18421 tggcatcgat attaactcca ttatgttcaa aaaagcttgt atcttctata gcaactaaag
    18481 cttctataag gcgtggagga agctcttcat aaggagcgta aaaacgatgc tgttcaaaaa
    18541 tattagccac aagcttgcca tttctatcgt aaatttgtgt tgtaagagga ggtttgtatt
    18601 ctttaaaagt ataaccctca gtatcagcac ttgtgaaaag ataagccaca taaataaatc
    18661 cagctataaa caaaagagta aaaaatgaaa aaatatattt taatattttc ataaataagc
    18721 ctttaaagtt tggatatcaa gccctaaagc agtgcttaga tttcctactt ggtgggtgat
    18781 gaaattttga tgaaaaccct cacacataat acaacccgcc ttgcctttat aaagatcatt
    18841 ttctacataa tctcttaaag cattttcatc aaaattttta aaataaagcg tagtttttga
    18901 aagagaaaaa actctttttt caggttttac aagcaaaaaa gccgataaaa tacttgcata
    18961 cttgccattt tgcaaggcaa gcatttcata agcttctttt ttatcctttg ctttggtaag
    19021 aattttttca tctatacaaa ctatactatc tgcaaaaagc aaattttggt tttgaaaatc
    19081 tttgcctaaa gtacttaaaa attgtctttc tttttcaaga actatttttt gaacatataa
    19141 aaaaggtgaa atattcttat ctaaattttc atcataatca aaactaactt gcctaaaatc
    19201 aatctttgcg gttttaagca agttagctct tgaaatggaa cttgaagcaa gaattaacat
    19261 taaagtgctt tttctatcgt ttctaagctt tgttttaaag cttcattgat tttgcttaaa
    19321 tcttttccac ctgcagtagc aaaatcatct cttccgccac catttccacc taaaatttgt
    19381 gccgcttctt taaccaaagc tcctgctttt aaaggcacat ctttaacacc agctgctaaa
    19441 gtgatttttt catcttttac ttggataagt aaaatcaccg ctttagcaaa tttgttttta
    19501 aaatcatcaa tcatagcttt aatatcgcca ttatctatac gttttacgca aatttcaaca
    19561 ccttggatat ttttagaatc aagctcggtt ttacttgaat ttttaagctc attttttaaa
    19621 cttaaaattt catttttaag ctttttaatc ccgcttaaaa tatcattatt tttaagttca
    19681 tcttttactt tagaaagttc ttcaagttga ttttttacaa attctaaagc cgctttagaa
    19741 accacagctt caatgcgtct aactccagca ctcacaccgc tttctttaac tatgtaaaaa
    19801 cttcctattt gagcagtatt tttaacatga gttcccccgc aaagttcctt gctttcacct
    19861 agagttaaaa cacgcacatt gccttggtat ttttcattaa acaatgctat agcgccgctt
    19921 tttttagctt cttctaaagg catattttct aagatagctt cgcttgagtt tataatcatt
    19981 tcattgactc ttttttcaat gttttctagc tcttctttgc ttaaagcttt atgatgagta
    20041 aaatcaaatc ttagtttatt gctttcaacc aaagatcctg cttgacttac atgagaacct
    20101 aaaatttctc ttaaagcatg gtgtaaaaga tgagtggctg agtggtggcg tgcgatttgc
    20161 tctctttttt ctgtatcgat tcttgcatga actatatcgc caacttttag ttcttcgcct
    20221 gcttttacaa agctaagatt gagattaaaa aacttttgcg tatctaaaac ttcacgcttg
    20281 gccataaatc cactatcagc actttgcccc ccacttgttg cataaaaagg tgtgttttta
    20341 agcatcaccc aacccgcatc tttaagggtg gaaacttctt taaaatcttc atctaaaagg
    20401 gctaaaattt tactttcgca ttctgctttt tcataaccta cgaaatgatt ttctccaaat
    20461 ttttcaagca agtttttaaa atctccgctt gcagttttat ctccacttcc tttccaagaa
    20521 gccttagcgc gtgctttttg ctcattcatt aaaagttcaa atttttcttc atcaacttta
    20581 agattttttt ctcttagcat atcagccgtt aaatcaagcg gaaaaccata agtatcataa
    20641 agtttaaagg ctacttctcc gctaaaaatt tctttagtgt ttttaagctc ttcattaaaa
    20701 atttcaatcc cattttctat agtgcttaaa aatctttctt cttcaaggcg aatttgttct
    20761 tttataaagt cttttttctc attaagatag gtataatgtc cgcccattaa atcgcataca
    20821 acatcaacta gtttatacat aaaagcttgt ttaaaaccta acaaatatcc atgtcttaaa
    20881 gcacgacgca aaatacgacg caaaacataa cctctacctt ctttatcaaa acttacccct
    20941 tgtgcaagca aaaatacact tgatcttata tgatcagcta tgactctaaa acttgctccg
    21001 ctttcataaa tataagtttt attacaaagt tttgaaattt cattgatgat tggcataaaa
    21061 agcgagctat caaaattgct gaatttacct tctttaatcg ctgttactct ttcaagtccc
    21121 attcccgtat caatgcttgg ctttggtagt gggctaagca ctccatcagc acttctttca
    21181 tattgcataa aaacaagatt ccagatttct aaaaatctat ctccatctcc gcccatataa
    21241 tcttcgcttg agttaaaatg ctcttctcct tggtcataaa aaatctcact acaaggacca
    21301 caaggaccag tatcgcccat ttgccagaag ttatctttat cgccgaattt gtaaattctt
    21361 tctttttgaa tgtgtttttg ccatagatta aaagcttcat catcgttttc atgcacggtt
    21421 acataaagtc tgtctttagg tagttttaaa aattcagtta caaattccca agcataagct
    21481 atggcttgtt ctttaaaata atctccaaaa ctaaaattcc caagcatttc aaaaaaagta
    21541 tgatggcgtg cggtatatcc tacattatct aagtcattgt gctttccgcc cgctcttata
    21601 caagtttgac agcttgtttt gcgtggaggg tttgggcgtg gaatttctcc tgtaaatata
    21661 cttttaaaag gcaccatacc cgcattagta aaaagtaaag ttgcatcatc aggaactaaa
    21721 ggacttgacg gggttatctc atgtcctttt gatgcaaaaa aatccaaata agcttttcta
    21781 atatccatga attttcctaa agaaattttt ataaaaacat atcataccaa aattacttta
    21841 aattaagtaa aactaaaata caataaacat ttttatttaa ttttatttct ctaaggtttt
    21901 ttatgaattt tatcaatctt caagcccaat atctcgcata caaagatgaa atcaatgctg
    21961 aaattgaaag cgttttatca agctcttctt ttataggcgg tgcaaagctt aacgaatttg
    22021 agcaaaattt agctcatttt ttaggtgtta aacacgctat aggttgttca agtggaacca
    22081 gtgctttata tcttgcctta agagccttag atattggcaa agatgatgaa gttatagtgc
    22141 ctagttttac tttcatagca acagctgaag ttgtggcctt agtaggcgca aaacctgttt
    22201 ttgtagatat aaatttatca aattacaatc ttgattttga agcagtgcaa aaagcaataa
    22261 ccccaaaaac taaagctgtt atagcagtaa gtatgtttgg acaaatgagt gatttaaggg
    22321 ctttagaaga aattttaaaa gataaaaata tcactttgat cgaagatggt gcacaaagtt
    22381 ttggtgcaag tttcaaagga gaaaaatcct gctccatagc taaaatttca tgcacgagct
    22441 tttttccttc aaaacctttg ggagcttatg gcgatggtgg ggctattttt tgccatgatg
    22501 atgaaattgc taaaaaaata agaattttac tcaatcacgg acaaactcag cgttataaac
    22561 atgaatttat aggtataaat ggacgccttg ataccttgca agcggcgatt ttaaatgtta
    22621 agttaaaata cctagaaaaa gaattagaca aaagacaaaa attagcacaa acttataatg
    22681 caaatttaaa aaactgccaa attccgcaaa ttgatccaaa tgcttttagc gcttatgcac
    22741 aatacagcgt tttagttgaa gatagagcta gtgtattgca aaaatttgaa aaagctaata
    22801 taccttatgc tatacactat ccaacccctt tgcataaaca accttgcttt agtgagtttt
    22861 caaatttaga acttaaaaat tcagaatacg caagcgaaca catcttatct ttgccttttt
    22921 cacctttttt aagtgaagaa gagcaagagc aagttatttg tatttttaaa gattaattcc
    22981 atgaaaatag gtatcatagg ccttggaaaa atggggcaaa accacttaaa tgaacttagt
    23041 aaaaattctc attttaagct taatgcactt tttgatcttt gcaaaaatcc aaatctaaat
    23101 atttttgatg atatttttta tgatgatttg gataaatttt taaatcaaaa taatgatatt
    23161 atcatcatag caacacctac aaattcacat ttagcaatag caaaaaaagt ttttaaacaa
    23221 tgcaaatgcg ttttaatcga aaagccttta gctctaaatt taaaagaaat agacgaaatt
    23281 tcaaatttag ctaaagaata cagcgtaaaa gtaggcgtag gtttttgtga aagatttaat
    23341 cctgcggttt tagccctaaa aaaagagctt gaaaatgaag aaattatcag cattaacata
    23401 caaagatttt caccctaccc gcaaagaatc agcgatgtag ggattttgca agatttggct
    23461 gtgcatgatc ttgatttgct ttgtttttta agcaaacaag aaataacaaa aaccaatttg
    23521 cttaaaaaat atacccaaga tcaaacaaga gaaagtgaaa gcattattct atgtgagctt
    23581 gaaaaatgta ttgctagcat acatcaaagt tggaatagca cacaaaaact aagaaaaatt
    23641 catcttatta ctaaaaatca tttttatgaa gccaatttaa atgacttttc tttattaaaa
    23701 gatggaaatt ttatagaact tactcaacaa agtccacttt tttcagaaca cgaagctttg
    23761 ttaaaactta tcgataatca agctaatcat ttagccagca cgagcgatgc ttacaaagtt
    23821 caagaaattt tagaaaggtt tgcgtgaaat tagttttatt tttaaatatg ggcggagcta
    23881 cgaatttaca agattgtgaa gtttttttaa aaaatatgtt taatgatcct tatattttag
    23941 gaatcaaaaa tcgattttta agaaaatttg tagcatggat cataacaaag gctcgcgtta
    24001 aagccatgca agaaaactat aaaaaaatgg gtggaaaatc ccctttaaac gaacttactc
    24061 aaagcctgtg taataaactt aatttaaaac aagatgaatt taaatttgat tttgtaaatc
    24121 tttatgtgcc tccttttgcc acagaaattt tgcaaaaata cactttaaat gaaagtgatg
    24181 aaatcattct ttttccactt tatccgcacc attcttgcac cacagtaact tcatctttag
    24241 aagttctgca aaatgaaatt tcaaagcaaa aaattcaagc aaaagtaaaa actatagata
    24301 ttttttacaa aaatgagctt tataatgaga tgatagtttc gcacattttg gctaaaaaaa
    24361 gtaaatttga tgccaaaatt ttgattttct cagcgcattc tttaccacaa agcattattg
    24421 acaaaggtga tttatatgaa aagcatgtaa atgatcatgt agaaatttta aaagaaaaac
    24481 taaaagatca ttttgatgaa tttattttag cttatcagtc taaactaggc cctgtaaaat
    24541 ggcttgaacc aaatacaagc gatgttttag caaatttaaa cgataaagct ttgatttacc
    24601 ctatttcttt ttgcattgat tgttctgaaa cgatttttga actaggtatg gagtataaac
    24661 atttagcaaa atgtgattat gatttgataa gttgccctaa tgatagtgat gaatttatgg
    24721 aatttatttt aaattctata aat
//
LOCUS       DAEBKH010000006        23998 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.006, whole genome shotgun sequence.
ACCESSION   DAEBKH010000006 DAEBKH010000000
VERSION     DAEBKH010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23998
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.006"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            21..227
                     /locus_tag="KIL20_000153"
     CDS             21..227
                     /locus_tag="KIL20_000153"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720223.1"
                     /translation="MDYADNIKNYKDPAHYNTDMNSMQLNAIRDNTHILNTQNIVKYL
                     NTMERKIKEFDLTPFVEYIKNQNF"
     gene            complement(231..791)
                     /gene="gmhA"
                     /locus_tag="KIL20_000154"
     CDS             complement(231..791)
                     /gene="gmhA"
                     /locus_tag="KIL20_000154"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HBD2720224.1"
                     /translation="MINLVEKEWQEHQKIAQESEILKGQIAKAGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSPNVLEAFKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDEGF"
     gene            complement(788..2173)
                     /gene="rfaE1"
                     /locus_tag="KIL20_000155"
     CDS             complement(788..2173)
                     /gene="rfaE1"
                     /locus_tag="KIL20_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HBD2720225.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDKSGKFLQENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDISAILLENELIALFDEKIKDFKAVVLSDYAKGVLTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFKNLEGENLEKGIKKLKE
                     DFALRYSIITLSEAGIALFDEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLASGIEIF
                     KACELANEAAAVVVSKIGSMSVSFDEIKSFNRVDFEKKIKSKEELLTLLKQNDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDVLIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILIKGADYKDKLVVGADIVSKVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(2166..3119)
                     /gene="rfaD"
                     /locus_tag="KIL20_000156"
     CDS             complement(2166..3119)
                     /gene="rfaD"
                     /locus_tag="KIL20_000156"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HBD2720226.1"
                     /translation="MKIAITGGAGFMGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIKDFRPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEKPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPCLFEGSDQIYRDFT
                     YIKDVISANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYRPKFTLEEGIKDYLGEIKRLFEKEVNA"
     gene            complement(3120..3680)
                     /gene="gmhB"
                     /locus_tag="KIL20_000157"
     CDS             complement(3120..3680)
                     /gene="gmhB"
                     /locus_tag="KIL20_000157"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HBD2720227.1"
                     /translation="MFIFFLKKLYYNVFMKTKALFLDRDGVINIDKKYVYKIEDFEFC
                     DGIFELCRYFLARNYLLFVATNQSGIARRYYKESDFLKLCDYMLKEFAKQDVKIDKIY
                     HCPHLEGCECRKPKAGMLLKAKDEFDLDMKNSIFIGDNLSDMQAGLNANIGTLILVNE
                     EKKEGDFFRQFKNLKEILSFFKEKDI"
     gene            3762..4064
                     /locus_tag="KIL20_000158"
     CDS             3762..4064
                     /locus_tag="KIL20_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HBD2720228.1"
                     /translation="MKKLLAVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(4087..4293)
                     /gene="ccoS"
                     /locus_tag="KIL20_000159"
     CDS             complement(4087..4293)
                     /gene="ccoS"
                     /locus_tag="KIL20_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HBD2720229.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALNKKRLS"
     gene            complement(4290..6647)
                     /gene="cadA"
                     /locus_tag="KIL20_000160"
     CDS             complement(4290..6647)
                     /gene="cadA"
                     /locus_tag="KIL20_000160"
                     /EC_number="7.2.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cadmium-translocating P-type ATPase"
                     /protein_id="HBD2720230.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKFFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLSHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGLFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMHSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFNGKEFAPKKVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGESIPKLIQKEDEIFSACMVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLSAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKVLDLNELYNFVKLSKHPISQNIASYLKQKGAKDLNLNFKKHSSIQAKGLS
                     AELNEELLLGGSSKFLQEKSIATKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIARKLEIQNYQASCLPEDKMKAIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            6757..8055
                     /gene="rho"
                     /locus_tag="KIL20_000161"
     CDS             6757..8055
                     /gene="rho"
                     /locus_tag="KIL20_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HBD2720231.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IRKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            8059..9588
                     /locus_tag="KIL20_000162"
     CDS             8059..9588
                     /locus_tag="KIL20_000162"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HBD2720232.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSILIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQEIKQENTTNITPRITPAPIIPNLEKKIEKNAYEILLDSIYDRDFDLA
                     ECFKQSTKFISFENNTLNISSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKAL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGEPSIE
                     N"
     gene            complement(9585..10106)
                     /locus_tag="KIL20_000163"
     CDS             complement(9585..10106)
                     /locus_tag="KIL20_000163"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HBD2720233.1"
                     /translation="MQQKCFCISKMIRFSKIIILLTVASLAGIVVFGNVTDYNSNFQF
                     VSHVMSMDTKPDYLGNAIVYRAITSPVIHHIGYIAIILFETFITLTALKGAYDMFKAR
                     NLDAQSFHNAKIFGIISLTCCCILWFFAFQVVAAEWFGMWMSKVWNGLPDATRLVTYM
                     FLALIFISLKNDD"
     gene            complement(10178..12277)
                     /gene="copA"
                     /locus_tag="KIL20_000164"
     CDS             complement(10178..12277)
                     /gene="copA"
                     /locus_tag="KIL20_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HBD2720234.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLEDQEKRKDIIAKIKNLGFEILEDEQSLNAYKVKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGLKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGTLRIKANKKAMDSTLEQIKNLVFEAGNIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWALKADLNTAFLHACAVLLISCPCALGLATPIALVVASSNAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKENLSIFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDQIFDLKGEGRVIVGSGIKYKEDSDIYLAGSAKFLHENEIDTKESDIFFDTFKEYVR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKKQNLKTFILSGDHVKNVEKIAKELQID
                     EFYAQLKSEEKLRIIQKFKKTLFVGDGINDAAALSAATVSMSFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRSIIKLNLFWAFIYNVLCIPIAAGFVPFITLSPHIAALAM
                     CFSSITVVLNSLRLKRI"
     gene            complement(12277..12471)
                     /locus_tag="KIL20_000165"
     CDS             complement(12277..12471)
                     /locus_tag="KIL20_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HBD2720235.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIIERL"
     gene            complement(12461..13411)
                     /gene="czcD"
                     /locus_tag="KIL20_000166"
     CDS             complement(12461..13411)
                     /gene="czcD"
                     /locus_tag="KIL20_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HBD2720236.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSVDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSGIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCDLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(13485..13748)
                     /locus_tag="KIL20_000167"
     CDS             complement(13485..13748)
                     /locus_tag="KIL20_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HBD2720237.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQASRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(13819..14313)
                     /locus_tag="KIL20_000168"
     CDS             complement(13819..14313)
                     /locus_tag="KIL20_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HBD2720238.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIALAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(14310..15086)
                     /locus_tag="KIL20_000169"
     CDS             complement(14310..15086)
                     /locus_tag="KIL20_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HBD2720239.1"
                     /translation="MEKPDIQRLTNFLIIYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KAKVVFEQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVGILICCIALGIYMTLSISDFGILR"
     gene            15153..16079
                     /locus_tag="KIL20_000170"
     CDS             15153..16079
                     /locus_tag="KIL20_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HBD2720240.1"
                     /translation="MAKIGIVGLGYVGAASAYSIVIQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELKNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKLLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASVLGQNLLDFYKQKLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEK
                     VFELKFNEKEKIKLENSKQQIKNAIQSVKDKI"
     gene            complement(16076..16678)
                     /locus_tag="KIL20_000171"
     CDS             complement(16076..16678)
                     /locus_tag="KIL20_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HBD2720241.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEAKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(16759..16986)
                     /locus_tag="KIL20_000172"
     CDS             complement(16759..16986)
                     /locus_tag="KIL20_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720242.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(16997..18448)
                     /locus_tag="KIL20_000173"
     CDS             complement(16997..18448)
                     /locus_tag="KIL20_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HBD2720243.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAQI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINNKTKFYGRLSMAKNWSQMGWSGSPYDLDAGRNTRSSGP
                     VLYVDRAYLDYYITPEWIATVGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLILFNIAYLSDFALPLNNGPIALPGTGSGATTILDDDGVVNLGDLTIANLHFENY
                     KAFGTNFNYFLSLGYSHGNNNQLSPTLSAIIKRQGYGNGKFNEEDGYAVHVGGRYDFT
                     KALKVGYEFFWGSRYWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTN
                     IQNIWGNRGLPFGGAKKDKARADNIMLMYNVKF"
     gene            complement(18604..19086)
                     /locus_tag="KIL20_000174"
     CDS             complement(18604..19086)
                     /locus_tag="KIL20_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HBD2720244.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(19096..19803)
                     /locus_tag="KIL20_000175"
     CDS             complement(19096..19803)
                     /locus_tag="KIL20_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HBD2720245.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIEAKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEEDDDVQAVYTNID"
     gene            19912..20253
                     /locus_tag="KIL20_000176"
     CDS             19912..20253
                     /locus_tag="KIL20_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HBD2720246.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQILGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIVLSIVG
                     IIMINIGEVKE"
     gene            20253..20561
                     /locus_tag="KIL20_000177"
     CDS             20253..20561
                     /locus_tag="KIL20_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HBD2720247.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKNKIWGLAAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(20579..22171)
                     /locus_tag="KIL20_000178"
     CDS             complement(20579..22171)
                     /locus_tag="KIL20_000178"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HBD2720248.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALTNPNDFAKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFDTEYYVNDAGNQIYLL
                     GLSILLSVKENILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSQENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAILNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(22183..22422)
                     /locus_tag="KIL20_000179"
     CDS             complement(22183..22422)
                     /locus_tag="KIL20_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HBD2720249.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNTDASIDETKKA"
     gene            complement(22424..23041)
                     /gene="gmk"
                     /locus_tag="KIL20_000180"
     CDS             complement(22424..23041)
                     /gene="gmk"
                     /locus_tag="KIL20_000180"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HBD2720250.1"
                     /translation="MQGFILLISGPSGAGKSTLLKKLFDEFEDELYFSISSTTRKPRE
                     GEKNGIHYHFISHEEFQKGIDGDHFLEWAKVHENFYGTSLKHTQDALDNGKIVVFDID
                     VQGFKIARQKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKELS
                     DYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(23044..>23998)
                     /locus_tag="KIL20_000181"
     CDS             complement(23044..>23998)
                     /locus_tag="KIL20_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HBD2720251.1"
                     /translation="KEDDKNEEIEKQELLNDSKANTLEMQEELNESQDDNANKALETQ
                     NLEDENLEQETTKEQTQEDIQTDLDLTLEDGGSQKEDLSQEHTALDTEPSLDELDDKN
                     DEDLEDNKELQANISDFDDLPVVEEQEKEMDFDDIPEDAEFLGQAKDNEESEENLEEF
                     SPVVEEDVQDEMDDFISNLSTQDQIKEELAQLDELDYGIDSDNSSKVLEDFKDEPILD
                     DTELGTNEEEVVVPNLNISDFDALKESDIQEALGEEIVEKNEEPIVSNATKDDNSEEI
                     VNELSQSIAGAITSSIKDDTLKAALKGMNMNININISFKED"
BASE COUNT         8288 a         4432 c         3120 g         8158 t
ORIGIN      
        1 aaatatatgg atttgatgat ttggactacg ctgacaacat aaaaaattat aaagatcctg
       61 cacactacaa tactgatatg aactctatgc aacttaatgc cataagagat aatacgcata
      121 ttttaaatac ccaaaatata gttaaatatc ttaatacaat ggaaaggaaa attaaagaat
      181 ttgacttaac accatttgta gagtatataa aaaatcaaaa tttttgaaaa ttaaaaacct
      241 tcatctataa tctggcaaag tgtgtgtatg attaaaatgt gcatttcttg aattctagct
      301 gtatcatcgc ttggtacaac aagattatgg tcacaaagct tattcatcat tccaccaccc
      361 tttccactaa gccctaaaca aagcatatta agttcttttg cttttttaaa agcttctaaa
      421 acattagggc tttttccgct cgttgaaata ccgattaaaa catcattttc atttcctaaa
      481 gcttccactt gtcttgaaaa aacaaactca aaaccatagt catttcctat agcactaagt
      541 gctgaagtat cggttgtaag cgctatacct gccaaagcct tgcgttcttt tttataacgc
      601 ccactaagtt cagctgcaaa atgctgtgca tcagccgcac ttccaccgtt tccacaaatc
      661 aaaatcttgc cacctttttt aagacactcg cacaaaagct ctcctgcttt agcgatttgt
      721 ccttttaaaa tttcactttc ttgagcgatt ttttgatgct cttgccattc tttttccact
      781 aaatttatca ttttttatcc ttaatctttt ctatgatctt actcgtacta aatccttctt
      841 caaagtcgat taattcaacc tttgaaacga tatctgcacc cacaacaagc ttatctttat
      901 aatcagctcc tttaatcaaa atatcgggtt ttaaaaagct tataagttct aaaggtgtgt
      961 cttcatcaaa aatcactaca aaatctacaa aataaaaagc tgccaacata caagctcttt
     1021 gaaactctga atttacagga cgactctcgc ctttgagtct tttcacactc gcatctgagt
     1081 ttaagcccac aatcaaaaca tcgcccaatc ttttagcttt ctcaaggtat tttatatgtc
     1141 caaaatgcac gatatcaaaa caaccatttg taaaaacgat ctttttatca ttttgtttta
     1201 aaagcgttaa aagttcttct ttgcttttaa tttttttctc aaaatccaca cgattaaaac
     1261 tcttaatctc atcaaaactc acactcatgc tacctatttt actcactaca acagctgcgg
     1321 cttcattggc aagttcgcaa gctttaaaaa tttcaatccc acttgccaaa caaaaagcca
     1381 aaactgcgat cacactatcg cccgcccctg ttacatcata aacttctaaa gctttagcag
     1441 gtgcaatttt taaaccctca tcaaaaagtg cgatccccgc ttctgaaaga gtgatgatag
     1501 aataacgcaa agcaaaatct tcttttaatt ttttaatccc tttttctaaa ttttcaccct
     1561 ctaaattttt aaatttcaaa gcctctaaag cttctttttt attaggcgtg agtaaggttg
     1621 caccgctata tttactaaaa tcactgcctt taggatcaac taaaacagga atatttaaag
     1681 ccttagcttt ttttatcaca gccttacaaa ctttaggggt taaaacacct ttggcataat
     1741 cgcttaaaac cacagcctta aagtctttaa tcttttcatc aaacaaagca ataagttcat
     1801 tttcaagcaa aattgcactt atgtcttctt catctagtct taaaacctgc tgattgtgtg
     1861 ccataatgcg atttttaaaa ggggttttgc gtcctttttg gatcaaaaat tctcctttta
     1921 aattttcttg taaaaatttc ccactcttat catcacccac aacaccgagc gcaaaaacat
     1981 cagctcccaa gctttttaaa tttgcataaa cattcgcagc cccgcctaat cttttatctt
     2041 ctttaagggt tttagctacc aaaacagggg cttcaggact gatacgcgaa caatcacacc
     2101 aagtgtaatt atccaccata aaatccccta taattaaaat tttaggtttt tgctgactta
     2161 aaaactcaag catttacttc cttttcaaaa agtcttttta tctcgcctaa ataatctttt
     2221 ataccctctt ctaaagtgaa ttttggccga taatcccaag tttgatctag ttttgcctcg
     2281 gtatgaaatt gataagattt tacataagga tttgggatat attcgcaagg caaatcagtc
     2341 tttaactctt tttgcaaaat atcaactata tcttgaaaag ttcttgcttt accactgcct
     2401 acattataaa ccccgcattt tgaatcaagg gcgattaaat tggcactaat aacatcttta
     2461 atataagtaa aatctctata aatttgatca cttccttcaa acaagcatgg attttttcct
     2521 gctaaaattt gatggccaaa ttgcaaaacc atagaagcgg ttttgttttt ataaaattcg
     2581 ccttttccat aaacattaaa atatctaagt cctaccaaat gggctttatc gtagtatttt
     2641 ttcgctagtt tatccatcat caattttgaa aaagcataag gattttttgg tttttcatct
     2701 ttacctacgg tttgcggact ttttgcatcg ccataaactg aagctgaact tgcataaata
     2761 agctttgcat taagatctat gctaagttct ataaaatctt taaaagtatt taaattggtt
     2821 tgtaaaacct tagtttgatc aaaaaccgta gtgtctgaaa ttgctgcttg atgaaaaata
     2881 atttcaggtc taaaatcctt aatctttttt aaaacttttt catcattaat atcgcctgca
     2941 aaaagttctc cgtcaaattc aagcaaattt ttaaaatgcc caaaactttg caaatttcca
     3001 ttttcaaaag tcgcactact acgcatttta tcgatgatta aaatttcatg tttttcttgc
     3061 aaatttaaag ctagttgcga acccataaat cctgcgccac ctgtgattgc tattttcatt
     3121 taaatgtcct tttctttaaa aaagctcaaa atttctttta aatttttaaa ttgtctaaaa
     3181 aaatcgcctt cttttttttc ttcatttact aaaatcaaag tgccaatatt agcatttaac
     3241 cctgcttgca tatcgcttag attatctccg ataaagatag aatttttcat atccaaatca
     3301 aactcatctt ttgcttttaa aagcatacct gctttaggtt tgcgacactc acaaccttct
     3361 aaatgcggac aatgataaat tttatcaatt tttacatctt gcttggcaaa ttctttaagc
     3421 atataatcac aaagctttaa aaaatcactt tccttgtaat atcttcttgc aatacctgat
     3481 tgatttgtcg ctacaaaaag caaataattt ctagctaaaa aatatctaca aagttcaaaa
     3541 attccatcac aaaattcgaa atcttctatt ttatagacat attttttatc tatattaatc
     3601 acaccgtctc tatctaaaaa taatgctttt gttttcataa aaacattata atatagcttt
     3661 tttaaaaaga aaataaacat tatctttaat ttcttaagat ttttattaaa aataaagata
     3721 tataatacct agcaatctaa tttttactaa ggagaaaaca aatgaaaaaa ttattagcag
     3781 tttctgcttt ggcatgtctt ggtgtttctg cttttgctgc agatggtgct acacttttta
     3841 aaaaatgtgc agtatgtcat ggtgcaaatg ctgacaaagt ttacttaaac aaagttccag
     3901 ctttaaaaac tctttcttct gctgaaagac ttcaatacat gaaagaatat tcagaaggca
     3961 aaagaaatgc ttatggtcaa ggtgcgatca tgaaacttaa ccttaaaggt ttaactgaag
     4021 aagattttaa agctatcgaa gctcatattg aaactttaaa ataatttcta aaaaaggctt
     4081 ttctttttaa gaaagccttt ttttattcaa agcttctttt ttacgccttt ctaattctat
     4141 agcatcacgt aaagaatcct catcatcatt taaagtagta aatttataat catcatcaaa
     4201 ttgtttattc ttaatccccc aaagcaaagt tgccaaaatg ataaaaaacg ctaagataga
     4261 aactcctatc atcatcatga ttatactatt cattctttga tccttaaagc atttaaaacg
     4321 actattatac tactaaaaga catagaaata gcagcaaata aaggattaat catacctaaa
     4381 aaagccaaag gtatggtaca agcattatag aacaaagaaa aagcaaggtt ttgcttgata
     4441 attttaaagg tgtttttaga taatttgatg gcttttttta aagaaagcaa gtcatttttc
     4501 aaaagcaaaa catcgctact ttctatagct agatcacttc cttctcttaa agtcatcgaa
     4561 acacttgcat attttaaagc tagagcgtca tttaccccat cacctacaaa taaaactttg
     4621 taatttttgc ttaaattttc tatagctttc atcttatcct cgggtagaca agaagcttga
     4681 taattttgaa tttctaactt tctagcgatt ttttccactg ctttttgatg atcgccacta
     4741 agtatcatta attctttctt ttctttttta agataagcga taagctcttt tgcaccttct
     4801 cttaaaacac tatcaaactc aaaaaaagct aaaattttac cttccttagc aaaaataaaa
     4861 tgagtattat caaattcctt agttgcaata ctcttttctt gcaaaaattt agaacttccg
     4921 cctaaaagca actcttcatt taactcagca cttaaacctt tagcttgaat acttgaatgc
     4981 tttttaaaat tcaaatttaa atccttagct cctttttgct ttaaatacga cgcaatattt
     5041 tgagatatag gatgtttaga aagttttaca aaattataaa gctcatttaa atcaagcact
     5101 ttatctaaaa aaacctcttt aagttcaagc tctattttag ttaaaatacc tgttttatca
     5161 aacaccacac aatcacattt gcttaaatct tctatcacac tagaactttt aaataaaata
     5221 tgctttttta aagccctacc taaggccaca agattgctca cgggcgttgc taaagccaaa
     5281 gcacaaggac aagcgataat caaaactgca atcgcattga ctaaagaaat ttcaaaactc
     5341 tcttctttgt aaaaaaacca aaaagcaaaa caaataaaag cgatcaataa aaccgttcta
     5401 gaaaaataag ccgaaagact attaaccaaa ctttcaagtt ttgctttttt agaacttgca
     5461 agttctaaaa gctgaataat ttgactgagt tttgaatcct tataaagctt tgttgcttca
     5521 tactccacac ttccatcaag caccatacaa gctgaaaaaa tttcatcttc tttttgtatg
     5581 agttttggaa tactttctcc atttaaagaa gaagtatcca cactcatttc accactttta
     5641 caaatcccat cgattaaaat tttatctcca gttttaagca aaattctatc ccctaaacaa
     5701 accttttgaa cttttttagg agcaaattct ttaccattga aaactaaaac ttcattttgt
     5761 aaaaaatcat taagcccatc tatggtatct aaagcacgct ttttgctaaa catctcaaga
     5821 tattttccta taaacacaaa gcaaattatc atcgccacag aatcaaaata cacttccccc
     5881 accctaaaaa acatagccca taaagaataa acataagcca aactcgctcc gctaatcacc
     5941 aatacatcca tatttaaact atgcattttt aaagttttaa aagcactttt ataaaaatga
     6001 gagcccgtat aaaaaagcac aggagaacaa aggataaatt cagcaaaatt taaaatatcc
     6061 ttagtatcct tatccatacc gctaaaaagt cctgcgtatt ttgccactgc tatccacatg
     6121 atattcatca cacaagctat agctacgaca agcttagaat aaaattccct ttttaataaa
     6181 tccgcttttt ttgaagcctt gctcgcatca taagcactcg ctttatagcc tatactttca
     6241 ataagtctta aaatttgcac caaagaaatg ctttgttcat caaaaacaat gcgtgcttta
     6301 tggcttaaat gattgatatc aagttctaaa attccttctt gcttggttaa aattttctca
     6361 ttaagccaca cacaagctgc acattctata ccgtgtatca tgagataaat ttcactaaat
     6421 ccttctttgg ttttagtgat aaactcatca taatttttca tttcattttg aaaatttaca
     6481 gggcttaggg tttgatttcc aagcttttca taaaactcat ctagtccact ttcatgtaaa
     6541 atttcccaaa cgctctcaca acccttacaa caaaaaaatt tacccttata ctctatcatt
     6601 tgagcttgtt tataatcaag tttgcaatgt tcacatttca taatcattct ttaaaaaaat
     6661 attttttata attataaaca aaatttgaca aaaagtgcat ttttttacta aaatcacatt
     6721 ttacaaaaat tattctgcta aatcttacga ggacttatgg aaaaagaaaa aaaacaacat
     6781 caaagaaccc acgttccagt ggaaggttat aaaatcgaag aattaaaatt attagatcta
     6841 gaaaatctag ttaaaatcgc taatgaatgt gaaatcgaaa acccaagaga atttcgccgt
     6901 caagaactta tttttgaaat tttaaaagca caaacaaaaa aaggcggttt tatacttttt
     6961 acagggattt tagaaatttc ttccgaaggt tatggctttt taagaggtat ggactctaat
     7021 cttagcgata gtgttaatga cgcttatgtt tcaaattcac aaattagaaa atttgctctg
     7081 cgtgtaggcg atatcgttac aggacaagtt agagaaccta aagatcaaga aaaatactat
     7141 gctcttttaa aaatcgaagc gatcaattat ctgcctttac aagaagccaa agaaagacct
     7201 ttatttgata acttaacccc tatttttcca acggaaaaaa tcaaactcga atacgatgcg
     7261 atgaagctta cgggtcgtgt tttagatctt tttaccccta taggaaaagg acaacgtggg
     7321 ctcatcgttg ctccaccacg cacaggtaaa acagaactta tgaaagaact tgctactgct
     7381 attgcaaaaa accatcctga aatgcattta attgtgcttt tagttgatga aagacctgaa
     7441 gaagttaccg atatgcaaag atgtgtaaaa ggcgaagttt ttagctctac ttttgattta
     7501 cctgcttata accatgtgcg tgtagctgaa ctcgtaatag aaaaagccaa aagaatggta
     7561 gaaacaggaa aagatgttat tatcctgctt gatagcatca caagactggc acgtgcttac
     7621 aacaccgcaa ctccaagcag tggaaaagtc ctaagcggcg gggtggatgc taatgcccta
     7681 cacaaaccaa aacgtttctt tggtgcagct agaaatatag aaaatggagg ctctttaacc
     7741 atagttgcta cagctttaat tgacacaggt tcaagaatgg atgatgtgat ttttgaagaa
     7801 tttaaaggca caggaaatag cgaaatagtt cttgatagaa atatcgctga tagaagaatt
     7861 tatcctgcaa ttaatatcat caaatcagga acaagaaaag aagaattact ccaaggcgtg
     7921 gcaaatcttc aaaaaatttg ggcgatccgt tcagcgattt ctcaaatgga tgatgttgaa
     7981 gcgttgaaat ttttatattc taaaatgctt aaaaccaaag acaatgtaga acttttatct
     8041 ataatgaacg agtaaaaaat gcttcaagct ttagcgatta aatacaggcc aaaaaccttt
     8101 gatgaactca taggacaaaa aacagttagt gtaagtttaa aatacgccct aaatcataat
     8161 cgcttagctc atgcttatct tttttcggga cttagaggaa gtggaaaaac ttcaagtgct
     8221 agaatttttt ctcgtgcttt agtttgcgaa caaggaccaa gcgatactcc atgtggcact
     8281 tgcaaacact gtcttgcagc acttgaaggc aaacatatag acattataga aatggatgct
     8341 gcaagtaacc gtgggcttga agatatacaa gccttaatcg aacaaaccaa atacacccct
     8401 tctatggcaa gatttaaaat tttcatcatt gatgaagtac atatgcttac cccacaggct
     8461 gcaaatgcac ttttaaaaac cttagaagaa cccccaagtt atgttaaatt tatacttgca
     8521 accacagatc ctttaaaact tccagctact gtgctttcaa gaacgcaaca ttttcgcttt
     8581 aaacaaattc cacagagtga aattttaaat catcttaaag aaattttact taaagaaaat
     8641 gttaaatttg aagaagaagc tttaaaattt atagcaagaa gtggcaatgg atctttaaga
     8701 gatactttaa ccttgcttga tcaagccatt attttttgcc aaaatgaaat cagcattagc
     8761 aagattaccg atatgttagg ctttttagat cctcaaaaaa tcaaagcctt ttatcaggct
     8821 atcttaacaa aagacaagga aaaagttttt gcatacttag aagaattaca agactatgaa
     8881 gcctcaagcg tgattgatga aatgcttttt tatttaaaag aaagcttttt tgcaaaaagt
     8941 acagaatttt ctattttaat ttatgaaaga tttttccgta ttttatcaaa agctaaaaat
     9001 atgctttgcg atgatgatgg ctttacgctt tgtgttatgg cttttatgat gatggaagca
     9061 agccatttaa aagaaattga tgcacaaatc caagaaatca aacaagaaaa tacaacaaat
     9121 attacaccta ggatcacacc tgctcctatc atacctaatc ttgagaaaaa aatagaaaaa
     9181 aatgcttatg aaatcttgct tgatagtatt tatgataggg attttgatct tgcagaatgc
     9241 tttaaacaaa gcacaaaatt tattagtttt gaaaacaata ccttaaatat aagctcaaac
     9301 gcacaaggac aaaatcgcga tacactcaat aaaggtttta aactcataca agaacttttt
     9361 aaagctaaat ttggagaaaa tgctaaaatt aatgtgcaaa aagcactaac aattgatgaa
     9421 aataagcttc aatccttaac tcaagaatta ccaaacaatg aaaataaaaa catagatatt
     9481 caaagttcta ttaatatgct taaagaaggg gccaaaaaat ttgacccaca agaagatctt
     9541 aaagaggctc ttaaagattg ttttggagag cctagtatag aaaattaatc atcgttttta
     9601 agagagatga aaatcaaagc taaaaacata taagttacca atcttgtagc atcaggtaaa
     9661 ccgttccaaa ctttgctcat ccacattcca aaccattctg cagcaactac ttggaaggca
     9721 aaaaaccata aaatacaaca acaagttaaa gaaataatcc caaaaatctt agcattatga
     9781 aagctttggg catctaaatt tctagcttta aacatatcat aagcaccttt tagagctgtt
     9841 aaggtaataa aagtttcaaa aagaataatt gctatatagc ctatatgatg aatcacagga
     9901 gaagtaatag ccctataaac tatagcatta cccaaataat caggctttgt atccatactc
     9961 atcacatgcg aaacaaattg gaaattagaa ttgtaatctg tcacatttcc aaaaaccact
    10021 atacctgcta acgatgcaac ggtaagcaaa ataataattt ttgaaaatct aatcattttg
    10081 cttatgcaaa aacatttttg ttgcatttat actcctttaa taatatattt tggtaatatt
    10141 aattatatat aatatattat taataaaaat taaattttta aattctttta agtcttaaag
    10201 aattaagcac cacggtaata gagctaaaac acattgcaag tgctgctata tgaggactta
    10261 aagtgataaa aggtacaaat cctgccgcga taggaatgca aagcacatta taaataaaag
    10321 cccaaaaaag atttagctta ataatactgc gtgttttttt agcaagttta aaacatttaa
    10381 aaatcgccga taaatcatct tttatcaaga taaaatctcc tgtttttttt gcaagttcat
    10441 ttgcttttga aaaactcata ctcacagttg cggcagataa agccgccgca tcattgatcc
    10501 catctcctac aaaaagagtt tttttaaatt tttgaatgat tcgtagtttt tcttcactct
    10561 taagttgagc ataaaattcg tctatttgta attctttggc tattttttct acatttttta
    10621 catgatcgcc gcttaaaata aaagttttaa gattttgctt ttttaaattt aacacaagct
    10681 ctttggctcc atcttttaaa gcattgctta acaaaacacc gcctaaacac tttttattct
    10741 tagcaaaata caccctaaca tattctttaa aagtatcaaa aaagatatca ctttcttttg
    10801 tgtcaatttc attttcgtgc aaaaacttcg cactacctgc gagataaata tcactatctt
    10861 ctttgtattt tataccagaa cccacaatca ctcttccctc accctttaaa tcaaaaattt
    10921 gatctttatg caaagcctta gctataggat gagagcttaa actttcaatt tgacataatt
    10981 tatcaaaatc atctttagaa agattgtgtt taaaaatact caaattttcc tttgtcaatg
    11041 tacccgtttt atcaaaaaaa gcatacttaa ctaaggctaa tttttctaaa gcggcaggat
    11101 ttttaataag aatgaaattt tttgccgcat ttgaacttgc cacaaccaaa gctataggtg
    11161 ttgcaagccc taaagcacaa ggacaagaga tcaaaagcac agcacaagcg tgtaaaaaag
    11221 ctgtatttaa atctgctttt agcgcccaaa aaacaaaaac taaaaaagca aaaaatatta
    11281 taccccctac aaaatattta gaaatttgat ctgctaaatt tgccaaagga cttttgatat
    11341 ttcctgcttc aaaaactaga tttttgattt gttctaaagt actatccata gcctttttgt
    11401 ttgctttgat ccttaaagta ccatttaaaa ctactgctcc tgcttgaact tcgtcgcctt
    11461 ctttttttaa aacaggcaaa aactccccat ttaaaaaact catatcaagc tctgcactcc
    11521 ctaaaagcac cactccatct gcgacaatgc tttctccttc ttttaccaaa agcacatcgc
    11581 cacttttgac aaaagaactt gaaatttctt tgatactttc atcttcaagc aaaatttttg
    11641 tcttttttgt gtctatattt tctaaaattc tttgataatc ttgtgcttta aatttagcct
    11701 tactttcaag atattttcct aaaagcacaa aagaaataat catcattgca ccgctaaaat
    11761 acaaatcttc ttctttaaaa atttgcaaat acaccaaaaa agaatacaca aaagcactca
    11821 aagtccccaa agctacaagg gtgttcatat ctaaattttt acttttaagt cctaaaaaag
    11881 catgagaaaa aaagtctctc ccacaataaa atatcccaaa aaaactcaaa gccatttgga
    11941 tattttgcga aaaagaactt ttaacaaaca tttcaaaata cataataatc acactcaaaa
    12001 ctatacttaa gagcaaattt tttcttaatt ctaagtgttt ttttaccttg tatgcgttta
    12061 agctttgttc atcttctaaa atttcaaagc ctaaattttt aatttttgcg atgatatctt
    12121 tgcgtttttc ttgatcttca agtaaaaaaa ccccactaga attcacataa gaaacactag
    12181 catctttaac accatcaatt tttttacaag ctctttctat agcattagaa caattaacgc
    12241 aagtcatttt gcctattttt atacgcaatt cttccattat aaacgctcta tgatctcaaa
    12301 acctaaatct tgaaattctt ttgtaaaatt tgatacttga ttttcttcta aatttaaact
    12361 taaaattttt tgctccaaat ccacttctat atttccaaat tcatcttcaa gagaattttt
    12421 gatcaaattt acacaattca tgcaattaac attttttact ttaaatttca ttttcgctcc
    12481 ttataggttg tatagtaatg tgcccgattt caaattcatg tagtaattta tgggataaat
    12541 cctgagatag tttttcaaat tcctttagat cgcaaactct tacttttaaa tgcatggaag
    12601 ctactaacat tttattggta atttgagtaa tatgcaaatc caccacctca tccacactag
    12661 gatttaaaag caaaacttgt cttacttttt ctatatccac aggagaactt tcaagcaaga
    12721 cattagcact ttgtttaagc aagataatcg cccatcttaa aagcaagatt gataatacaa
    12781 tagctaaaat cgtatctata taaacaatac cactaaaata caccacaatc ccacctataa
    12841 taaccgctaa agagcccaat aaatcactca tcatatgcaa aaaagcggac ttcatattga
    12901 cattttctaa atttgcaccc ttaaacatca tcaaagcatt aatcccattt accaaaaagc
    12961 ccaaaatagc tacaattatc atggttttag catcaatttc ttttggatta ataaattttt
    13021 ctatagcctc ataaatgata aataaagccg ataaaataat ggttaaagca ttgataaaag
    13081 ccactaaaac ttcaagacga aaatacccaa aggtcttttg atgatcttgc catttttcta
    13141 cagctataat ggctaaaaaa ctaagagcta aggcaaaaac atcagaaaac atatgcaaag
    13201 tatcgcttaa aagtgctaaa gaatttgaaa ggattgaata aataaattgc acaagcatca
    13261 tagaaaaagt cattaaaaga gaaattttta aaatcttttt atccacactc cttgcatcag
    13321 catgggaatg atgatgttca tgagaatgtt cttcgtgatt atgatgacaa gatttgttag
    13381 ctaaaggctc gtgtgataaa aatttataca tcttatatcc tttttgcttg acattttaag
    13441 atattaagct aaaaaggata taaatatttg ttatttttat aaaattaaaa gtcaaaaagc
    13501 tcgcctagcc aactttcttt ctttttcttt ttatagtagt cattgtgctg atgataagct
    13561 gagtcattat atcttgactc ttgtcttgaa gcttggttaa aatttgctgt attagggaca
    13621 ctgcgttcta tgattttgtc aagttctcca cgatcaagcc aaacgccacg acactttgga
    13681 caataatcaa tctcaactcc actcctatca ctcataacca aatctacatt acaaactgga
    13741 cataacatac aatacctttt tttaaaattt ttaatttaaa attataaaaa gaaatattaa
    13801 acaaatttgc aacaagtttt aatgtttttt tgcatgtcta gtcatcataa aactttgttc
    13861 aaaaaatata agcaaagtaa cactcactcc tatagctaga gccaaagtca cagaaacagt
    13921 tgtaaaaaaa taatcaaaaa attgaaccaa aaattcagac ttagccttca aatcatcact
    13981 gcgtataaaa gaaataagat acaaaatcgc tttataagcg taaattccag gtatcatagg
    14041 aataagagca ggaaaagcga taatttcagc aggggtttta atgatttttg ctaaagcaat
    14101 tcctaaacat cctatgcaaa atgaagcaac aaaagttgca attgctaaag tttgaaaatg
    14161 aaaatattcc accaaagtaa aacgaagccc atgtgcaatt gctgctaaaa gagcagataa
    14221 aataagggtt tttaaaggtg ggttgcaagc ataagcaaaa ccaaatcccg ccacagcagc
    14281 aaaaaacata tctcttaaaa taaattcaat catcttaaaa tcccaaaatc cgaaatacta
    14341 agcgtcatgt aaattccaag cgctatacaa caaatcaaaa tccctacact gataatacga
    14401 ctaagtccca ttaaaatatg atcttttaat atatcaatca cagaatttat aaaaaatacc
    14461 cctggtataa gatacaagat actagaaccc aaagccacat cagaagtatt ggtatatccc
    14521 atatccagcc caaaaaatac aaaccacgat gagataaaag aacaaagaat atattgaatt
    14581 cttaaatcaa tctttgcttt agttaaaata tatcttaata acaatcccac aaatgttgca
    14641 aaaaatacta aatttccagc accaaaatca ccaccaaaaa gtctacaaaa agccgaattt
    14701 gccatagaaa caaataaaag attaagcaaa taagaatgct ttttttgttg agaaatttgc
    14761 tcaaaaacga ctttcgcttt ttcaagatcg tatttgtgat catatatagc ccagcttaaa
    14821 gcacttaaat caaaaataag cttaaaatta acatgggcat gatgattggg tataacataa
    14881 gttctttgaa tggagttatc atccatatct acaacattta aagtgatatg atgaaaaaag
    14941 aaattgatat ttatctcata gccataaacc tcagctattc ttcctacgca ttttgccacc
    15001 ctagctgtat aagttccagc acctagcaaa gttttagtat atatgattaa aaaattagtt
    15061 aatctttgta tatcaggttt ttccatattt taataatctt tgattgaatt tgttataatt
    15121 atagcaaatt ttaaaataaa taaggagaaa aaatggcaaa aatcggtata gttggtttag
    15181 gttatgtagg agctgctagt gcttatagca tagttattca aggaatttgt tcagaacttt
    15241 acttatatga tataaaacaa gatttagctc tagctcatgc aagagatttg gaagatatgt
    15301 cagccattca tttttcttat acaaaaattt ttcatgtgcc aaatttagaa aatttagctt
    15361 cttgcgatat tatcatttta gcttttagaa aagaaagctt aaaagaatta cctagtcgct
    15421 tagtagaact taaaaacaat atcctcgaac ttaaagacat tgtcttaacc ttaaaaaatg
    15481 ctaattttaa aggcaaatac attgtcgcaa caaatccaaa tgacaccata acttactaca
    15541 ctcaagtatt aagccaatta cctaaaaatc atgtttttgg tagtggaaca aatttggata
    15601 gttcaagact taagaaattg ttagccaaag atttaaacat aaattcaaaa gatatttttg
    15661 cttgtatgat tggtgaacat ggagattctc agtttgcagc actttctaat gcaagcgttt
    15721 taggacaaaa tttattagat ttttataagc aaaaattagg caaagattta gacatacaag
    15781 aactcgaaaa agccgtgatt agcgagggat atttcatcta tgaacgcaaa ggaaggacag
    15841 aatttggcat aggaacttct tgtgcaaatt tagccaaagc catcctagaa gatagaaaaa
    15901 gtttacatcc tgtaagtgtg gtttttgatg atatagcttt ttcaatgccc gctatcatag
    15961 gaaaagatgg tatagaaaag gtttttgaat taaaattcaa tgaaaaagaa aaaataaaat
    16021 tagaaaattc aaaacaacaa atcaaaaacg ccatacaaag cgtaaaagat aaaatttaag
    16081 cctttttaaa aggctttttg attttaatat aaattaaact tgctaaaatc acaaaaacaa
    16141 ttataataat taaaatttga gttaaataag ttttaatcaa ctcttcattt tgtcctatat
    16201 aataacccaa aaatacaagt atagccaccc aaatagcact accaagtgca gtaaaaagta
    16261 taaaatttac aagtttcatt tttaccaaac ctgcaggcat agagatgtac tgacgaatcc
    16321 ctggtaaaag acgacaagta aaggttgaaa attccccatg tttgttgaaa aattcttcaa
    16381 atttagcaaa tttggcttcg tttataccaa aatacttacc ccattttaat acaaaatttt
    16441 taccccaaaa aaagcaaata taataattaa tcaaagcccc taaaacagaa cctaaagtcc
    16501 cactaagtat acaaagagtg atatcaagtt cgcctttatg tgccaaatat ccagcaggta
    16561 tcataacaac ttcacttgga aaaggtataa aacaactctc taaggtcatt aagataataa
    16621 tacccaaata cccccaagca ctagccgtct caacaataaa agaaatgatt tcttgcatat
    16681 tagccttatt tgaagaaaat tttaaaaaat tgtagcttaa aagattaaac agtaaaaagc
    16741 ggttttatac cgcttttttt atttacctgc aactgaaact tgatttggat tgtccgctgc
    16801 acgagcgatc atacactctt ttaaaacagc agcatcagct ggatcgctaa cttttttatt
    16861 aatccagcgt tcaacttgtt tcattgtttt tgactctggc tctggagctt cgtattttgc
    16921 catcaaactt gcacaatcag ccaaagcaat gataggtaat aaacttgcaa aaagtatttt
    16981 tctcatcttt tgctccttag aattttacat tatacattaa catgatatta tcagctcttg
    17041 ctttatcttt tttcgctcca ccaaatggta agccacgatt accccaaata ttttggatat
    17101 tagtatagct taagcgtaag aattgatatc tatcaagttg ataaatcaca taaaaatcat
    17161 gtgctgttcc tcttgtcatt cttatattaa gtggatcgtt gatacttgga cggctcatag
    17221 tataccagta tctacttccc cagaagaact cataccctac ttttaaagcc ttggtaaaat
    17281 catagcgtcc gcctacatgt acagcatagc catcttcttc attaaattta ccattaccat
    17341 aaccttgcct tttaataatt gcacttaatg tagggcttaa ttgattgttg ttcccgtgag
    17401 aataacctaa agatagaaaa taattaaaat tcgttccaaa agctttataa ttttcaaaat
    17461 gaagatttgc tatagttaaa tctcctaaat ttaccacacc atcatcatca agaatagtag
    17521 tagcaccgct accagtacca ggtaaagcaa ttggaccatt gttaagtggc aaagcaaaat
    17581 cgcttaaata tgcaatatta aataatatta aattatctcc cataccttct ataggaagct
    17641 ctccttctac tgcagcatag taaagatttg catcagcatc tttttgatcg ctcatccagt
    17701 ctcttacctt gccttcttca tcccattgat aggttttacc ataagctgca cggatagcta
    17761 ccttatgatc ttgcaaactt tcaggcttat aagtgatcac tgctgcatca cctagagcat
    17821 taatcgctaa ggctggataa gttgattgtc ttaaagcatt gtttctaaga ttacttcccg
    17881 gaccatcggt tcctggctgt cttcctacgg ttgcaatcca ctcaggtgtg atatagtagt
    17941 caagataagc tctatctaca taaagtacag gcccacttga tcttgtgttt cttcctgcat
    18001 ctaagtcata agggcttcca ctccaaccca tttgagacca gtttttagcc atagataaac
    18061 gaccatagaa tttggtttta ttattaatat cagcattcat atttaaatga agctcattca
    18121 tccatttgtt attagcacta taatcttgtc cgctaacttt atagtttgta tttgaaactg
    18181 ctgttgaaaa ctcaagtcca aatttaacct tgctcaaagc agcttggaat tctgtttcat
    18241 cggctctatc attaagatca gcaagttcag cttttacagc ttcattttgc ttagcttgag
    18301 cttccctttc ttttctgatt tgtgcaagtt cagcttgaat ttgtgcaagc tgtttttgaa
    18361 gcttggttat ctcatcatct gtatttttag caaaaagtga agatgaaaga agacaagcac
    18421 ttaaaataag tgaaaactta gttttcataa tcataactcc ttgtaatttt gttacattta
    18481 gcaaattaaa attgtgatta tagaaaaaaa agtttaaaaa aaaattatac attaatcatt
    18541 tttagctagt caaacttatg actagctttg taaatattgt agttttaaaa aagttttaaa
    18601 tttttaaatt ttatcgcaaa tttttatgtc taaaatttta tctccttggc gtatagagtc
    18661 tagaacttct aaactttctt catcttttgg atcaatttgc ccaaaaacag tatgaacccc
    18721 atctaaatga gcttgagggc tgtgacaaat gaaaaattga gaaccacccg tatcgcgtcc
    18781 tgcgtgtgcc atagataagg ttccacgctc atgtttatgc tcttgatcat cacattcgca
    18841 aatgatttca tatccaggcc cacctacacc attgccgtgt ggacaacctc cttgtatgac
    18901 aaaatttggg atcacacgat gaaaatttaa atctttataa aatccctcat tagccaaagt
    18961 agcaaaatta caaaccgttt gcggagcctc atcgccaaaa agttttaatt tcattgtgcc
    19021 tttttcagtt tctataagag caaatttgta ttcatttact ttgcttgtgt cgattgtttt
    19081 tatcattatt tctccttaat ctatatttgt ataaacagct tgaacatcat catcttcttc
    19141 taacttatct aaaagttttt ctatatcgct aagctgttct tcgctaaagc ttacaggatt
    19201 gtttggtata tactcaagtc ctgctttttt aagaactaaa cccttagctt ctatagcaga
    19261 acttagctca ccaaaggcag tataatcacc gctaattact aactcttctt cattttgttc
    19321 taattcttca agccctgcat cgatcaaatc aagttctaat tcttctaaat ctcctgcaaa
    19381 tttttcaaga tgaaaaaccg cttttctagt aaacataaag cctaaagatc cattttgcaa
    19441 aacttctcca ccatttttgc taaaaatggc tttaacatta gccacggtac gcgtagggtt
    19501 atcgctcata cattcaacta taaccaaagc tccatgtgca gcttttcctt cataatgaat
    19561 gtttttaata tctgcgctat cctttccact cgcacgctta atagccgcat ctatattatc
    19621 ttttggcata ttatttgctt ttgctgtagc tatagcactt cttaattttg gattcatatc
    19681 aggatcagtg ccaccttctt tagcagctac ttgtatggct ttagcaagct taggaaaaag
    19741 cttactcatt ttatcccatc tagcctcttt agaagctctt cggtattcaa acgctcgtcc
    19801 cataaattct cactttcttt aaagattttt aaacttaaaa gtataaacta aaaaggctaa
    19861 ttaaagcttt aaatggtatg attttaccat ttatttttgg ggagaagctt tttgaatatc
    19921 gcaaaaaaag aactttttgt tgcttggttt ttcttgattg ctgctattgt atttgaagtt
    19981 ttaggtacta gttttttaaa aatggaaaat caaattttag gctatatatt tatggcttta
    20041 tttatagctt tttcttattt ttttatgggc aaggcgatta aaaaaattca agtaggcata
    20101 gcctatgctg tatgggaact tttagggatt attcttatac ttttagtttc ttttatagtt
    20161 tttaaagaga gtttaacctt aactcaaatt ctaggcattg ttctttctat cgttggaatt
    20221 atcatgatta atataggcga ggttaaagaa taatgtatat ttttattatt gttctatcgg
    20281 cattgttaga tatcgtagca aatttattgc taaaaaaatc agatggtttt aagaataaaa
    20341 tttggggctt agctgcgatt gtcaatgcta tacttgcttt ttttctactt tctttttctt
    20401 taaaatatgt tcctttaagc atagcttact caacttgggg tgctataggc atcataggaa
    20461 cttgtcttgg tggatggatt ttatataaag aaaaattaaa caaaatagga attttaggta
    20521 tcattatcgt gataatagca gtatttttgc taaattatta aaacagcaaa atgctgtttt
    20581 aatgttccat tttgtttttt gcttcaatac ccattaaaga aaatgcggtt ttaatactaa
    20641 gagcaaccaa agaaaataat ttaagtaaat cattttcatt tgcagagcct acaactttat
    20701 tttcattgta gaatttatga aaatttgcag ctaaattttt aagataatca ggaatttttt
    20761 gcaaagctct agcctcaaaa gcatcattta aaatagcctt taaattcaaa gcttcaaaga
    20821 gtaaatttac accatcttga tttaaacttt gtaaatcagc tttcattaca tcatcgattt
    20881 ttttaccagc tttagcaaat acttgatgaa ttctagcgtg tgcatagttg atataataca
    20941 caggattaga actatcttct ttttgcaaat cactaatatc aaattccaaa tgcgtatcgc
    21001 attttttgct caaaaagata taacgcaaag catcacttcc tatctcatca accacatcgc
    21061 tcatcaagat aaaatttcct gctcttttac tcattttata aggttctcca tctttaagta
    21121 gggaaaccat ttgtgctaaa ataatctcaa gattattaga gtcaaatccc aaaaattcca
    21181 tcgcagcttt cattctaggg atataaccat gatgatctgc tccccagata ttaatacact
    21241 ttccataacc acgactcatt ttatctttat gataaacaat atctgctgcc aaataagtcc
    21301 cgcgtccatc ttcacggata attaccctat ctttttcatc gcctttttgc gaagaagcaa
    21361 gccaaatttt accttcttgc tcgtaaattc ctttatgctc ttttaaagat tctaaagttg
    21421 catttaaagc atcataatac gatctttcgc ttacatagct gtcaatttta atctttgctt
    21481 gttctaaatt ttgtttaatc aaaacaagca ttttatcttt tgcccaatca gccaaactag
    21541 ggatattttc ttggctaaaa aattctttac caaatttttc aaaagcttct tttgctaaat
    21601 ccgctatata ctcgcctttg taatattgct ctggatattc aacattttca tgaagtatat
    21661 tttctttcac acttagtaaa atagaaagcc ctagtaaata aatttgatta cccgcatcat
    21721 tgacatagta ttctgtatcg aatttatagc ccaaatgtct tgcaagtctt gttaaggtgt
    21781 ctccaaaaac agcgcctctt gcatgtccta tgtgtaaagg cccagtagga tttgcactca
    21841 catattcaag caaaaaactt tcttgttttt tttctccttt agcaaaatca tttggatttg
    21901 ttaaagcctg atttgcaagt tcatttaaaa aagttttgga aattctaaaa tttaaatacc
    21961 catttacagc ttcaactgat tcaaaacaat catgattttg aaatttgctc gctaagtcac
    22021 tagcgatcaa cataggagat ttttttaact ccttagccag tgaaaaagcc aaaggggtag
    22081 caaaatgtgc taaattttta tcctttggat tttcaagtgc aaaatcacac tctaaaatct
    22141 ttttaatttc attaaaaata atacttttca aaagactaaa ccttaagctt tttttgtttc
    22201 gtctatactt gcatcagtat ttgtattatt agttgtgttt ttattttctt ctattttttg
    22261 agtatttttt gctacttcat catcattatt catttcatct ttaaaagttt taataccttt
    22321 acctaaaccc tttgcaagtt ctggaatttt ttttgctcca aaaagcaata caacaatcaa
    22381 taaaataatc aaccaatgac ttggacttga ccaaccaccc attttattct ccttcattcc
    22441 aaatattttg aatttgccct agattctgcc ctttggttct aaatttatgg gcaattaaaa
    22501 tcgctcgcaa tgcttcataa ctttgcttta gctcatcatt aatgataaga taatcatagt
    22561 cgctaagttc tttcatttca tcactagcgt tttgtaatct tttttctagt tgtattattg
    22621 tatcagtatt tcgcttaata agtctttttt ttagctcatc tttatttttt gtagtaataa
    22681 aaacagaaac aatcttatca gccatttttt gtctggctat tttaaatcct tgcacatcaa
    22741 tatcaaaaac aactattttt ccattatcta aagcatcttg agtgtgcttt aaagaagtgc
    22801 cataaaaatt ttcatgcacc ttagcccatt ctaaaaaatg atcaccatct ataccttttt
    22861 gaaattcttc atgggatatg aaatgataat gtattccatt tttttcaccc tctcttggtt
    22921 tgcgagttgt tgaagaaata gaaaaataaa gctcatcttc aaattcatca aaaagttttt
    22981 ttaaaagagt tgattttcca gctccactag gacctgaaat caacaaaata aaaccttgca
    23041 attttaatcc tctttaaaac taatgtttat atttatattc atattcatac ccttaagagc
    23101 agcttttaag gtatcatcct taatacttga agtgatcgct cctgctatgc tttggctaag
    23161 ctcattaact atctcttcac tattatcatc tttagttgca ttgcttacta taggctcttc
    23221 atttttttct acaatttcct ctccaagagc ttcttgtata tcactttctt tcaatgcatc
    23281 aaaatcactt atatttaaat ttggcacaac cacttcctct tcatttgttc ctaattctgt
    23341 atcgtctaaa attggctcat ctttaaaatc ttctaaaacc ttgctactat tatcactatc
    23401 aataccataa tcaagctcat caagttgagc tagttcttct ttgatttgat cttgagtgct
    23461 caaatttgaa ataaaatcat ccatttcatc ttgaacatct tcttccacaa caggagaaaa
    23521 ctcctctaaa ttttcctctg attcttcatt atcttttgct tgacctaaaa attcagcatc
    23581 ctcaggaata tcatcaaaat ccatttcttt ttcttgctct tcaaccacag gaagatcatc
    23641 aaagtcgctt atattagctt gtaattcttt gttatcttct aaatcttcat catttttatc
    23701 atctagttcg tctaaactag gctcagtatc caaagctgta tgttcttggc ttaagtcttc
    23761 tttttggctt ccgccatctt ccaaagttaa atctaaatca gtttgaatgt cttcttgagt
    23821 ctgttcttta gttgtttctt gttctaaatt ttcatcttct aaattttgag tttctaaagc
    23881 tttgtttgca ttatcatctt gagattcgtt aagctcttct tgcatttcta atgtatttgc
    23941 tttagaatcg tttaataatt cttgcttttc tatttcttca tttttgtcat cttctttg
//
LOCUS       DAEBKH010000007        22632 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.007, whole genome shotgun sequence.
ACCESSION   DAEBKH010000007 DAEBKH010000000
VERSION     DAEBKH010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22632
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.007"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            143..967
                     /gene="panB"
                     /locus_tag="KIL20_000182"
     CDS             143..967
                     /gene="panB"
                     /locus_tag="KIL20_000182"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HBD2720252.1"
                     /translation="MRKSMISFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            978..1826
                     /locus_tag="KIL20_000183"
     CDS             978..1826
                     /locus_tag="KIL20_000183"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HBD2720253.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            1823..2203
                     /locus_tag="KIL20_000184"
     CDS             1823..2203
                     /locus_tag="KIL20_000184"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HBD2720254.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(2313..2771)
                     /locus_tag="KIL20_000185"
     CDS             complement(2313..2771)
                     /locus_tag="KIL20_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HBD2720255.1"
                     /translation="MLRKADIKDLNACLSLFEQSVKTLCAKDYTKDQICAWIKIDRQQ
                     WEEKFKYDEIFVYEKRGKIASFISVKQEQKLLDLLFTHPDFVRQGLAQNLLDFILKTY
                     LHNEIYTFASLSAKDFFLKNGFELIRENKVIKEGQNLKKFLMKKDVVYKN"
     gene            complement(2755..3414)
                     /locus_tag="KIL20_000186"
     CDS             complement(2755..3414)
                     /locus_tag="KIL20_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HBD2720256.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAKK
                     S"
     gene            complement(3404..4180)
                     /gene="surE"
                     /locus_tag="KIL20_000187"
     CDS             complement(3404..4180)
                     /gene="surE"
                     /locus_tag="KIL20_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HBD2720257.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYEKMKKVKKWLKANDE"
     gene            4359..5729
                     /locus_tag="KIL20_000188"
     CDS             4359..5729
                     /locus_tag="KIL20_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD2720258.1"
                     /translation="MFDFFKPKAKAIKFPKEEILPRYYKMRTWSLSGVFIGYMGYYLV
                     RNNITLSTPFIQNQLDLSKSDIGTITGSMLIAYGISKGAMSVISDKADPKKYMALGLI
                     LCALVNVLLGFSNSFYAYVGFVIALGVFQGMGVGPSFITLANWYPKKERGIYTAVWNI
                     SHNIGGGIVAPIVSLSGFALAALLGVSMADFNETYWHMNHFYVPAACAVIISLYVLYA
                     VKGSPKNEGLIDITEINEMRGIKTEEIKAVETPNLSSFEIFYRYVLKNKNAWYVAWMD
                     TFVYMVRFGLISWLPIYLLETKGFNKEQMGIAFWLFEWAAIPSTLLAGYISDKIFKGY
                     RMPPAIGAMVIIFFMIIGYFTSNNLYMVIFFAAMAGCLVYIPQFLASVQTMEVVPAFA
                     VGSCVGLRGFMSYVVGASLGTKAIGWAVDYYGSWNAGLIMLLSACILCILCSTLCHFS
                     AKKKYQ"
     gene            5871..6623
                     /gene="peb3"
                     /locus_tag="KIL20_000189"
     CDS             5871..6623
                     /gene="peb3"
                     /locus_tag="KIL20_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HBD2720259.1"
                     /translation="MKKIITLFGACALAFSMANADINLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFTQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVV
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            6720..7814
                     /locus_tag="KIL20_000190"
     CDS             6720..7814
                     /locus_tag="KIL20_000190"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HBD2720260.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGKFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKQAIKELINLSFTQKIDGILCIDSPAFNI
                     PFAKALKKAGSKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFSKSTYV
                     GHPLLDEIKEFKNQEDINHILSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGE
                     KILCIPPFNLEKLEIYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     TYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILSEI"
     gene            7826..8311
                     /gene="greA"
                     /locus_tag="KIL20_000191"
     CDS             7826..8311
                     /gene="greA"
                     /locus_tag="KIL20_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HBD2720261.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRHAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGDLDKGYISIASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            8462..9079
                     /locus_tag="KIL20_000192"
     CDS             8462..9079
                     /locus_tag="KIL20_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HBD2720262.1"
                     /translation="MLIGEISATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFF
                     KRVKIFNLQEQPIKLNLHTSKGNNLVLNNAFIKLAHGDIFLPPLLQFTLKTLRNHYLL
                     IFLNFLNIITCNFISNKILQNQNKKNLFYQIKDFENLAKKRYERYENLGFWVCEGHYH
                     QNHQINKENIKYLNLASFAYERSFFVVEYQQEIKFREQKLRGQNV"
     gene            9072..10028
                     /locus_tag="KIL20_000193"
     CDS             9072..10028
                     /locus_tag="KIL20_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HBD2720263.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQVYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            10032..12341
                     /locus_tag="KIL20_000194"
     CDS             10032..12341
                     /locus_tag="KIL20_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HBD2720264.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVAATDSNEKSTPQAEPEAPKQETTTPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNTANKPAESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLVEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            12346..12867
                     /locus_tag="KIL20_000195"
     CDS             12346..12867
                     /locus_tag="KIL20_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HBD2720265.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            12867..13490
                     /gene="serB"
                     /locus_tag="KIL20_000196"
     CDS             12867..13490
                     /gene="serB"
                     /locus_tag="KIL20_000196"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HBD2720266.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMAGEL
                     DFFESLQKRVSLLKGMSYKKVLELGSTLPLMHGAHELIQYLKSKNIQIVIFSGGFHEG
                     IDPAMQKLGINLSFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
     gene            13490..14467
                     /locus_tag="KIL20_000197"
     CDS             13490..14467
                     /locus_tag="KIL20_000197"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HBD2720267.1"
                     /translation="MKNFSLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILN
                     SPIYKDKILKLKGKRTKDIYEELAISDIQKAADKLAPLFYQKNDGFISIEIDPRLHDN
                     TTLSLGEAKRLYSAISKENVMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRFDRLLNPKAKEQNRIGILNANL
                     AYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKGKMD
                     FKKPLMNFEIYTELNQIISQSEREKACNDLLSDGIEQFCIAFEDILKAL"
     gene            complement(14468..14890)
                     /locus_tag="KIL20_000198"
     CDS             complement(14468..14890)
                     /locus_tag="KIL20_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HBD2720268.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(14887..18156)
                     /gene="carB"
                     /locus_tag="KIL20_000199"
     CDS             complement(14887..18156)
                     /gene="carB"
                     /locus_tag="KIL20_000199"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HBD2720269.1"
                     /translation="MPKRTDIKSILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYRV
                     VLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESLLGWKEYEMEV
                     IRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAINPKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTVPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDNHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            complement(18416..19165)
                     /gene="mreC"
                     /locus_tag="KIL20_000200"
     CDS             complement(18416..19165)
                     /gene="mreC"
                     /locus_tag="KIL20_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HBD2720270.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGEKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINIGDEILTSGLDNIFFSDIPVGIVN
                     RIDDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(19155..20195)
                     /locus_tag="KIL20_000201"
     CDS             complement(19155..20195)
                     /locus_tag="KIL20_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HBD2720271.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGLDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(20207..21430)
                     /gene="clpX"
                     /locus_tag="KIL20_000202"
     CDS             complement(20207..21430)
                     /gene="clpX"
                     /locus_tag="KIL20_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HBD2720272.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(21423..22214)
                     /gene="lpxA"
                     /locus_tag="KIL20_000203"
     CDS             complement(21423..22214)
                     /gene="lpxA"
                     /locus_tag="KIL20_000203"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HBD2720273.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVIEAYAYVGKDTKIGNDVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGITPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGIRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(22214..>22632)
                     /gene="fabZ"
                     /locus_tag="KIL20_000204"
     CDS             complement(22214..>22632)
                     /gene="fabZ"
                     /locus_tag="KIL20_000204"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HBD2720274.1"
                     /translation="EILPHRYPFLLVDKITELKVKEVVRGYKNISISDHVFMGHFPGH
                     PIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVRPGDRLDYE
                     MSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
BASE COUNT         7734 a         3755 c         3549 g         7594 t
ORIGIN      
        1 aactgaaatt ttctaaaatt gtaaccatta aagcaatcca tcgattaaat ataacttact
       61 ttatcattca tttactattt atgaaaaatt atatgctagt tttttgctta ttattttata
      121 gctaaaaatt gaggtatgca aaatgagaaa aagtatgatt agttttttgg aaaaaaaggc
      181 caaaaatgaa aaaataacca tggtaagtgc gtatgattat catagtgcaa gaattttaga
      241 caatagcgat atagatatta tattggttgg agattcatta gccatgacgg tacttggtat
      301 gcaagatact ttaagtgtta ctatggatga aatgttgatt tttaccaaag ctgtttctcg
      361 cggagctaaa aagtctttcg tacttgctga tatgcctttt atgtcttatc aaagttcaga
      421 tcgtgacgct atcttaaatg cctcaagatt tatcaaagaa agccacgcaa atggggtaaa
      481 agtggaaggg ggtatagaaa tcgcaagtaa gattaaattg atttcccaat caggaatacc
      541 cgtcgttgct cacctaggac taaccccaca agctgtaaat atgctaggtg gctatagggt
      601 tcaaggtaaa gatttacaat cagcccaaaa aattatagat gatgcaaaag ctgtgcaaga
      661 tgcgggtgct tgtatgttgg ttttagaatg tgtgcctgta aaactagcac aaaaaataag
      721 ctctatttta gaaattccaa caatcggcat aggttcaggc aaatactgcg atggacaagt
      781 tttagtttat cacgatcttt tgggtttaaa taaagatttt aaagcaaaat ttgtaaagca
      841 ttttgataaa attgatcctc aagtaggagt tgaaaaatat agagatgaag ttaaaagcgg
      901 tatttttcct tcccaagagc acagctttga ttatttagat gatgaattat tagataaatt
      961 atactaagga tacaaatatg caagtcatta cttctgtcaa agaagcaaaa caaattgtaa
     1021 aagattggaa atcacatcaa cttagtatag gctatgttcc aaccatgggt tttttacacg
     1081 atggacattt aagtttagtc aaacatgcca aaacacaaga taaggttata gtaagtatct
     1141 ttgtaaatcc tatgcaattt gggcctaatg aagatttttc tagttatcca agagatttag
     1201 aacgcgacat taaaatgtgt caagataatg gcgttgatat ggtttttatc cccgatgcaa
     1261 ctcaaatgta tcttaagaat tttagcacct atgtagatat gaatacgatc actgataaac
     1321 tttgcggggc taaaagaccg gggcatttta gaggcgtttg cacggtttta actaaatttt
     1381 ttaatatcct aaaccctgat atagtctata tggggcaaaa agacgcgcag caatgcgtag
     1441 tcgttaggca tatggttgat gatttaaatt ttgatttaaa aattcaaatt tgtcctatca
     1501 ttagagaaga agatggctta gctaaaagct ctagaaatgt atatcttagc aaagaagaaa
     1561 gaaaagcgtc actagctata tctcaaagca tttttttggc tgaaaaatta gtccgagagg
     1621 gagaaaaaaa tacttctaag atcatccaag ctatgaaaga tattttagaa aaagaaaaac
     1681 taatcaaaat cgattatata gaattagtcg attttaacac catggaaaat atcgaaaata
     1741 tcactgataa tgttttagga gcggtggctg cttttgttgg aaaaacaaga ctcattgata
     1801 attttttagt acaaggatta aaatgaatat cactttactc aaatcaaaaa tacatcgcgc
     1861 aagcgtaaca gaagctaggc ttgattatat aggaagtata agtatagatg aaaaattatt
     1921 gcaagcgagt ggaattttag aatacgaaaa agtccaagta gtcaatgtca ataatggcgc
     1981 tagatttgaa acctatacca tagccacgca agaagaagga gttgtatgct taaatggtgc
     2041 tgcggctcgt cttgcagaag tgggagataa ggtgatcatc atgtcttatg ctgattttaa
     2101 tgaagaagaa gcaaaaacat ttaaaccaaa agttgttttt gtggatgaaa ataacactgc
     2161 tacaaaaata acaaattatg aaaaacacgg agctattttc taacatctag ctatttttgt
     2221 aattttttct atcttagata aattcattta tctaagatag aaaaaaatga tttttatatc
     2281 ttttaatcca ttatttttgc ttatcttaac ttctagtttt tataaaccac atcttttttc
     2341 attaaaaatt tttttaaatt ttgtccctct ttgataacct tgttttccct tataagttca
     2401 aaaccatttt ttaaaaaaaa atctttagca cttaaggatg cgaaagtgta aatttcatta
     2461 tgcaaataag tttttaaaat aaaatcaagt aaattttgtg ctaaaccttg tctaacaaaa
     2521 tcaggatgag taaaaagcaa atcaagcaat ttctgctctt gtttaacact tataaaactt
     2581 gcgatttttc ctcttttttc atagacaaag atctcatcat atttaaattt ttcttcccat
     2641 tgttgtctat caattttaat ccaagcacaa atttgatctt ttgtataatc cttagcacaa
     2701 agtgttttta cgctttgctc aaaaagcgac aaacaagcat ttaaatcttt aatatcagct
     2761 tttcttagca agaacttttc ttaatgccaa gctggctagg gctaaaccaa aagatgcagt
     2821 cacacccata aaagatccaa gatctttaca atgcgcttcc tcatctgaaa ataccacatc
     2881 aaaatttccc ttaaagcctg attttctaag ctcataacga aattttttcg ctaaagcatc
     2941 gccgtgagtt ttaaaaatac ttgtagtttt aatgcgtgtt ggatcaagct ttctagctcc
     3001 acctgttgag gagataaaaa tttgtttttt aaaatctata agatgagcca aagctacttt
     3061 tgcaggaata tcatcaatgg catctatgat aagatcaaac tcgcttaaat caaaattttt
     3121 taaaaaattt tcatcgattt tactgactat acctttaacc ttataaattc tttcaaatac
     3181 tttagccttt tcttcgccta tattttcgct atgaatttgg cgattttgat tagtgatttc
     3241 aaatttatcc gcatcgatta aagtaaggtt tttaaaacca ctacgataaa gcgcatcaac
     3301 gcaaattcca cccactccac caagtccgca aaccaaaact tttgtttgtg aaattttttg
     3361 aaatttttct tctccaacta gccattttat acgtgtaaat ctatcattca tcatttgcct
     3421 ttaaccattt tttaactttt ttcatttttt cataagctgt aagatccagc attataggtg
     3481 ttattgtagc gtagcctttt ttaagtaagg caatatcgct atttttctca tcttcaaagt
     3541 ctaaattcgc cgctgcaagc caatagtact ctactcctct cggattgaca tttgaatggg
     3601 cttcaaaatt ataaaccctt ttgcctgctt tacaaatttt aatgcctttg atttttgatt
     3661 ttgcaggaaa attgatattt aaaaattctt ttttttccaa aggaaaacct ttatcaaaaa
     3721 tattttgaat gatttttttg gtaatttgta aagcattttt atagtctagt tctttttcgc
     3781 tttttttata aaattgagaa agagcgatag caggaattcc ttgtaaaacc gcctccatag
     3841 ctcctgcgca agttcctgag taggtaatat cctcgcctac attagcacct ttattaatcc
     3901 cacttattac aagatcaggc aaacgctttt tgtataaagc atgcaaagca agataaacac
     3961 aatctgctgg agtgccatca tcaagtttgt aaaatctttt tcccacttta acaaaacgca
     4021 aaggtttggt tagggttata gagtgcgaac aagctgattt ttcactagca ggagctacta
     4081 tggtgatctt ggctttaaat tcttttgtta acatcttaat gagtttttta agtccttcgc
     4141 tttcataacc atcgtcatta gtgataagaa tttctttcat tgtcttcctt gcaaaagata
     4201 aaatttggat tttagcatat ttttttaaag cttcatagta taaaaatttt aattttaaat
     4261 tatataaatt tcgtattatt tttaattatt tttttatttt atatcgatta atattattta
     4321 aactataaaa atataaagtt agtaaagagg gtttaaatat gtttgatttt ttcaaaccta
     4381 aggcaaaagc tattaaattt cctaaagagg aaattttacc tagatattac aaaatgagaa
     4441 cttggagttt aagtggggtt tttataggat atatgggata ttatcttgtg cgaaataata
     4501 tcactctttc aactccattt atacaaaatc aacttgatct cagtaaatca gacatcggaa
     4561 caatcacagg ctcaatgctt atagcttacg ggattagcaa gggtgcaatg agcgttataa
     4621 gcgacaaagc tgatcctaaa aaatacatgg ctttaggtct tattttatgt gctcttgtaa
     4681 atgttttact tggtttttca aattcttttt acgcttatgt aggttttgtt atcgcgcttg
     4741 gggtttttca aggtatgggg gtaggtcctt cttttatcac tcttgcaaac tggtatccta
     4801 aaaaagagcg gggaatttac acggccgttt ggaatatctc acataatata ggaggcggga
     4861 tagttgctcc tatagtttcg ctttcaggtt ttgctttggc agcattattg ggtgtgagta
     4921 tggcggattt taatgaaaca tattggcaca tgaatcattt ttatgttcct gctgcttgtg
     4981 cagttatcat tagtctttat gtgctttatg cagttaaagg aagtcctaaa aatgaaggtt
     5041 tgattgatat tactgaaatc aatgaaatgc gagggattaa aacagaagaa atcaaagctg
     5101 tagaaactcc aaatttaagc agttttgaaa ttttttatcg ttatgtgctt aaaaacaaaa
     5161 atgcttggta tgtggcttgg atggatactt ttgtttatat ggtgcgtttt gggcttattt
     5221 cttggcttcc tatttacttg ctagaaacaa aaggctttaa taaagaacaa atgggtattg
     5281 ccttttggct ttttgaatgg gctgccatac cttctacttt acttgcagga tatatttcag
     5341 ataaaatttt taaaggctat agaatgcctc ctgctatagg tgctatggtg attattttct
     5401 ttatgattat tggatatttt acttcaaata atctttatat ggttattttc tttgcagcta
     5461 tggcggggtg tttagtctat ataccacaat ttttagcaag tgtgcaaact atggaagtcg
     5521 ttcctgcttt tgcagtagga tcttgcgtag gacttcgtgg ctttatgagt tatgtagtcg
     5581 gtgcttcact tggaacaaaa gctataggct gggctgtgga ttactatggt agttggaatg
     5641 ctggtcttat catgctcctt agtgcttgta ttctttgtat actttgttct actttatgtc
     5701 attttagcgc taaaaagaag tatcaataac aattttaact tttgcttgca aaaataccaa
     5761 gcaaaagtta gattttaata atatttttgt tacattataa ctatttatta acatataatt
     5821 tctaaaatct caccttcaat caataaaaat ttatcataaa aggaaatact atgaaaaaaa
     5881 ttattacttt atttggtgca tgtgccttag cttttagtat ggcaaatgca gatataaacc
     5941 tttatggacc aggtggccca cacacggcct taaaagatat agcaaacaaa tatagcgaaa
     6001 aaacaggcgt taaagtaaat gtaaattttg gccctcaagc gacttggttt gaaaaggcta
     6061 aaaaagatgc agatatttta tttggcgctt cagatcaatc ggctttagct atagcgagtg
     6121 attttggaaa agattttaat gtgagtaaaa tcaagccttt gtattttaga gaagccatca
     6181 tacttactca aaaaggcaat cctttaaaaa tcaaaggttt aaaagatttg gctaataaaa
     6241 aagtaagaat cgttgtacct gaaggtgctg gaaagagcaa tacttctgga acgggagttt
     6301 gggaagatat gataggtaga actcaagata taaaaaccat acaaaatttt agaaacaata
     6361 tcgtagcttt tgttccaaat agtggaagtg caagaaagct tttcacacaa gatcaagccg
     6421 atgcttggat cacttggatt gactggtcaa aaagcaatcc tgacatagga actgccgtag
     6481 ctatagaaaa agatttggtt gtttatagaa cttttaatgt agtagctaaa gaaggtgcga
     6541 gcaaagaaac acaagatttt attgcttatt taagttctaa ggaagctaaa gaaattttta
     6601 aaaaatacgg ctggagagaa taaatcttca tacacgcttt ttagcgtgta ttcttccata
     6661 acttctttta attaagccaa aataagataa aatgtttaaa atattgataa ggaaattttt
     6721 tgaaaacctt tttagtttgc gccttagagc cttcagcaaa tttgcattta aaagaagttt
     6781 taaaagctta taaaaaagac tttggcaaat ttgaacttca tgggatttat gatgagagtt
     6841 tatgcaaaga atttgattta aattctaagc cactttatag ctcacatgag tttagtgcta
     6901 tgggttttat agaagtttta cctttgattt ttaaagcaaa acaagctata aaagagctta
     6961 taaatttaag ttttactcaa aaaatagatg ggattttatg tatagattca cccgctttta
     7021 acataccttt tgccaaggct ttaaaaaaag caggcagtaa aattccacgc atttattata
     7081 ttttacctca agtttgggca tggaaaaaag gtcgcatacc tatcatagaa agtcattttg
     7141 atattttagc ttctattttg ccctttgata atcaattttt tagcaaaagt acttatgtag
     7201 gccatccgct tttagatgag ataaaagaat ttaaaaatca agaagatatt aatcatatac
     7261 tttcaaaaaa agatgatgaa aaaactatag cctttttacc aggttcaagg cgtagtgaaa
     7321 ttaggcgttt aatgcctatt tttaaagaac tttctcaaaa atttaagggt gaaaaaattc
     7381 tttgtatccc cccgtttaat cttgaaaaat tagaaattta tggtgatatt agcgaattta
     7441 agatagaaag caacactcca aaagtgctta aaaaagccga ttttgccttt atttgtagtg
     7501 gaacagctac tttagaagca gctttagtgg gaactccttt tgttcttact tacaaagcaa
     7561 aggctatcga tatttttatc gcaaaacttt ttgtaaaatt aaaacacata ggacttgcaa
     7621 atattttttg tgatttcgct ggaaaagaag ctttaaatcc tgaattttta caagataaag
     7681 tcaatgtttt aaatttatat gaagcttata ataaatatga ttataaggca ttttttgcta
     7741 aagttgattt tttaaaagaa tatttacaat ttggaagtgc taaaaattta gcaaaaatcc
     7801 taagcgaaat ataaaaggat aaatcatgca aaaagaacca atgagtcaat ttggctatga
     7861 taaattagcc gcagaattaa aagatttaaa agacaatcaa cgccatgccg ttgtaataga
     7921 aatcgataca gcaaggagtc atggggattt gaaagaaaat gcggaatacc atgctgcaag
     7981 agaaaaacaa gctttgatag aaagtcgtat tgcagagctt agtgacttgc tagcaagagc
     8041 tcaagtgatc gatccttcaa gctatgaaca tgatagtgtg aaatttggtt caagtgttgt
     8101 gatcatggat ttggatacag aaaaagaaag taaatatact ttagtaggaa tttgcgaagg
     8161 agatttagat aagggttata tttccatcgc atctccaata gcaaaagcta tgcttgggaa
     8221 aaaagaagga gatgatttta aagtgcgttt gccaaaaggt gagagtgaat ttgaaatcct
     8281 ttctataaat tatgagcctt tgaaatttta aggataaaaa attttactac aaaatggagc
     8341 gattttaatc gcggatgctc atgaaaatga acaaagaaag ggattttggg aatttttaca
     8401 agccttaaag aaaggtaaaa tttccacccc tcaactcata cttatgggtg atattttcga
     8461 tttgcttata ggcgaaatct ctgctacaca tgaatttgct aaaccttaca tagaactttt
     8521 agaagaattg gccttaaaaa ttgaaattat ctacttagaa ggcaatcatg attttaatct
     8581 ttcttgtttt tttaaaaggg taaaaatttt taacttacaa gagcagccca taaagcttaa
     8641 tttgcataca agtaaaggta ataatcttgt tttaaataat gcttttataa aattagctca
     8701 cggagatatt tttttaccac ctcttttaca atttactctt aaaacattaa gaaatcatta
     8761 tttgcttata tttttaaatt ttttaaatat tattacttgt aattttattt caaataaaat
     8821 tcttcaaaat caaaacaaaa aaaacctttt ttatcaaata aaagattttg aaaatttagc
     8881 gaaaaaaaga tatgaaagat atgaaaattt aggattttgg gtatgtgaag gacactatca
     8941 tcaaaatcat caaatcaaca aagaaaacat taaatatctt aacttagcta gttttgcata
     9001 tgagagaagt ttttttgtag tagaatatca gcaagaaatc aaatttcgag aacagaaatt
     9061 gaggggtcaa aatgtttgat gaaaatatcg tgaaaacggg ttcaaatgaa atggagcttg
     9121 tcgatttccg tatctttaag caaggacacg ataaagtcta tgaaggaatt tatggtgtaa
     9181 atgtttctaa ggtaagggag attataaaaa tcccaagcct tacagaactt ccaggtgtac
     9241 ctgattacat cgaaggtatc tttgatcttc gtggagtggt tatacctgta gtcaatcttg
     9301 ccaaatggat gcaaatcact gagccagaaa gcactatgtt aaaacctagg gttattatta
     9361 ctgaatttag caatatcctt attggtttta tagttcacga agcaaaaaga attcgtagaa
     9421 taaactggaa agatatagaa ccagcaactt tttctacagg atcaggtgct ttagataaag
     9481 gtaaaatcac aggtgtaaca cgcattgaaa atgatgaagt gttgctaatt ttagatcttg
     9541 aaagtgttgt tgaagattta ggaatttacg ctccaaaaac agatatagat tttggaaaaa
     9601 tagaaaaatt tactggaaca gcacttatac ttgatgacag catgactgct agaaaacgcg
     9661 tcaaagaaat gatgcaacag atgggctttc aagttgttga agctaaggac ggcgtagagg
     9721 gcataaacaa attagaagaa ttaagccaag tttatggtga aagtttaaat gatactttaa
     9781 aaattatagt aagcgatgtc gaaatgccac aaatggatgg tttccacttt gctgcacgca
     9841 ttaaagaaga tccaagattt aaagatattc ctatagtctt taactcgtct ttatcaaatg
     9901 aatttatgaa tgagaaaggt gttcaagaag ctggtggaga aggctatctt gtcaaattta
     9961 acgctagcga tttcttcaat gaaattgcaa aggttatcaa aaaacatcaa tctcaagaac
    10021 aggggtaaaa tatggaagat atgcaagaaa tacttgaaga ctttttggtt gaagcttttg
    10081 agcttgttga gcaaatcgac catgatttag tagagcttga atcaaatcca gaagatttag
    10141 aattattaaa tagaattttc cgtgttgcac atacggttaa aggatcatca agtttcttaa
    10201 attttgatgt tttaacgaag ttaactcacc acatggaaga tgttttaaac aaagcaagac
    10261 atggcgagtt aaaaataact ccagatatca tggatgtggt tttagagtct attgatagaa
    10321 tgaaaacttt gcttaattcc attcgtgata atggcaacga tactgctatt ggtatggata
    10381 tagaaccaat ttgcgcaaga ttaacagcta tttcagaagg agagtctcct gttgcggcaa
    10441 cagattcaaa tgaaaaatct actccacaag cagaaccaga agcaccaaaa caagaaacaa
    10501 ctactcctga acctgaagta gatgttaatc aattaagtga ttctgaagtt gaagctgaaa
    10561 tagaaagact tttaaaagtt agaaaagctg aagatcaagc tcgtcgcgca caaaagaaac
    10621 aaacaacaaa tgcggcacct aaaccgacta acaatacagc aaataaacct gcggaaagtg
    10681 gagagaaaaa agttcctgct tcaggtagca atgctagcag tatggatcaa accatacgcg
    10741 tggaggtaaa aagattagat cacttaatga atctaattgg ggagcttgtt ttaggtaaaa
    10801 accgtttgct taaaatttac gatgatgttg aagagcgtta tgaaggagaa aaattccttg
    10861 aagaacttaa tcaggttgta agtcaattaa gtattattac aactgatgtt cagcttgctg
    10921 taatgaaaac aagaatgcaa cctatagcaa aagttttcaa taaattccca agagttgttc
    10981 gtgatttgag tcgtgaatta ggaaagcaaa tagaacttga aattacaggt gaagaaactg
    11041 aacttgataa atctatcgta gaggaaattg gcgatcctat catgcatatg attagaaatt
    11101 catgtgacca tggtgttgag gatccagcaa ctcgtgcagc taatggaaaa cctgaaaaag
    11161 gtatagttca acttaaagct tataatgaag gcaatcacat cgttgtagaa attacagacg
    11221 acggtaaagg acttgatcca aatggcttaa aagcaaaagc tatagagaaa aatttgatta
    11281 ccgaaagaga agcagatcaa atgacagaca aagaagcttt tgctttgatt ttcaaacctg
    11341 gtttttcaac tgcggctaaa gtaacaaatg tttcaggtcg tggcgtagga atggatgttg
    11401 ttaaaaccaa catcgaaaaa ctaaatgggg taattgaaat tgatagtgag ttaggtaaag
    11461 gaagttcgtt taaacttaaa attcctctta ccttggcaat cattcaatct ttacttgtag
    11521 gaactcaaga agaattttat gcaattccac ttgcaagcgt tcttgaaaca gttagagtac
    11581 caattgatga tatctatact atcgaaggta aaaatgtatt acgcttaaga gatgaagtgc
    11641 tttcccttgt gagactttca gatgtatttg gagttaaaca agtccttgaa agcggtgatc
    11701 aaacttatgt cgttgttata ggggtagcag aaagcaagct tggtattata gtagatactc
    11761 ttgtaggaca agaagaaata gttattaaat ccatgggtga ttatttacaa aatatccaag
    11821 gcatagcagg agctacaatc cgtggtgatg gtagagtgac attaatcatt gatgtaggtg
    11881 ctatgatgga tatggccaaa gaaattaaag ttgatattaa agcgcaatta gaatcaagcg
    11941 cgaaaaaacc taaagaacaa ccaagtgatt ataaagtctt aattgtagat gattctaaaa
    12001 tggatagaac cttaatgcaa aaagctttag aaccgctagg agttagttta gttgaagcaa
    12061 caaatggtgt tgaagcattg aatattataa aatctggcga acatgatatt gatgcaatgc
    12121 ttatagatat cgaaatgcca agaatggatg gatacacctt agctggtgaa attagaaagt
    12181 attctaaata tcgtaaccta ccactcattg cagttacttc aagaacaagt aaaactgacc
    12241 gcttaagagg tgttgaagtg ggtatgactg aatatatcac taaaccttat tctccagaat
    12301 acttggaaaa tgtggttaga aaaaatttga aactaggata agaatatgag taatgaaaaa
    12361 ttagagcaaa ttttgcaaaa acagcaaact cagatggctg gtcctgatgt cgatcaaaga
    12421 gaagatgata tcatccaact tgtcggcttt gtagttggag atgaggaata tgcgattcca
    12481 attcttaata tacaagaaat cattaaacct atagaatata ctagagttcc tagtgtacct
    12541 gattatgttc taggggtttt taatatgcgt ggtaatgtta tgccactcat tgatctagct
    12601 caacgctttc atttaggaag ttctaaaatg acacctcaaa caagatatat tgttttaaga
    12661 ggtgagacaa atggaactgg agttggagga aatgctggtt ttgttataga tagattaact
    12721 gaagcaatta aaattcacag aaacagaatc gatccaccac ctgaaacttt agttaaagac
    12781 aaaggtatga tttatggtat aggaaaaaga gatgaaaata tcttaactat actcaaagta
    12841 gaagctttac ttaagcgcga attttaatga ttaaactttg tgtttttgac tttgacgcta
    12901 ctttaatgga tggtgaaacc atcgatattt tagctacagc gcatggcaag ggtaatcaaa
    12961 caagcgaaat tacccgccat gccatggctg gagagcttga ttttttcgaa agtcttcaaa
    13021 aacgagtaag ccttttaaaa ggtatgtctt ataaaaaagt tttagaatta ggtagcacac
    13081 ttccactaat gcatggagca catgaactta tccaatattt aaaatctaaa aatatacaaa
    13141 ttgttatttt tagcggtggt tttcatgaag gcatagatcc tgctatgcaa aaacttggaa
    13201 ttaaccttag ttttgcaaat tatctgcatc ataaaaatga cattttaaca gggctagttg
    13261 gtggggaaat gatgttttca aattcaaaag gcttaatgct acaacgatta aaaagctttt
    13321 taaatttgaa aacagatgaa gtgatgtgtg ttggcgatgg ggcaaatgat ttggcaatgt
    13381 ttaacgaaag tggattaaag attgcatttt gtgctaaaga aattttacgt tcccaagctg
    13441 atatttgcat agatataaaa gacttaaaag aaataataaa ggtaatataa tgaaaaattt
    13501 ttctctttgg tgtgatttta tagaaaatag ttttttagat aatgaatttt taaatttatt
    13561 atcacatgga attaatggtg ctacttcaaa tcctgctatt tttaaaaatg ctattttaaa
    13621 ttctccaatt tataaagata aaattcttaa attaaaagga aaaagaacaa aagatattta
    13681 tgaagaatta gcaatttctg atattcaaaa agcagctgat aaattagccc ctctttttta
    13741 tcaaaaaaat gatggattta taagtattga aatagatcca agacttcatg ataacacgac
    13801 tcttagttta ggcgaagcta aaagacttta tagtgctatt agcaaagaaa atgtaatgat
    13861 taaaattcca gctacaaaag cttcttatga agtaatgtat gaacttatga aaaatggtat
    13921 tagcgtcaat gctaccttaa ttttttctct tgaacaaagt caaaaatgtt ttgaagcttt
    13981 aaatgcaggt ttagtcgaat ttagaaaaaa caatatagcc ttaaaagaac aaaatactag
    14041 aacaccacaa gctgttataa gtatttttgt aagtcgtttt gatagacttt taaatcctaa
    14101 agccaaagag caaaatcgta ttggaatttt aaatgcaaat ttagcttata acaatatcta
    14161 ctcaaaaaat gaacctaata ttcgcgcctt gtttgcaagc actggagtta aaggagatga
    14221 tctgccaaaa gactattata tcaaagaact tctttttgag aattctgtta atactgctcc
    14281 tcttgatgca atagaggcat ttaaaggaaa aatggatttt aaaaaacctt taatgaattt
    14341 tgaaatttat acagaactta atcaaatcat ttctcaaagt gaacgagaaa aagcttgcaa
    14401 tgatttgtta agcgatggca tagagcaatt ttgtattgct tttgaagata ttttaaaagc
    14461 tctttaatta acgtattttt atcattttat tctttgaaag ttttaatatt tttgatggga
    14521 tattttcgaa aaatttctca tcaagtatta tatcagcaac acttctagcc cattcttcat
    14581 caaattcttt tccatgcttg tttgccgaag atgaataaaa atagccattt ttacttaaaa
    14641 aattcgcatg tttacactct ttcacaatac gaatggcctg attatttgga taaataaaag
    14701 ttgttttttt agaacgacgt actaaatttt taaaagattt tggaattctt gctaaacttt
    14761 ttaactcgca aaatttcgca gaagtgatta agcaaggttg atttttatct ctacctttta
    14821 aagcattaat ctcttctaaa tttttactta aaaatcctac cgtagtatct gtttgagcta
    14881 aataaatcaa gatttaagcc actcttgcaa actctttaca tctaggcaag atttactctg
    14941 tatagcttta atcgattttg cacctgctaa agctgatcgt aaatttgtaa aataaggtat
    15001 tttaaaacga ataatatttt cacgaatttt tttcgtatca cctttaaaac tgtgattatc
    15061 acttgtattg ataactaagt gaatttctcc atttttcaat ttatcttcaa cattggggcg
    15121 tccttctgaa attttatgta caagttcgca ctcaaaacca ctttctaaaa tttccttaca
    15181 agttccccct gttgccataa gcttaaagcc aagctttaca tattctgcag cgattttttt
    15241 ggtatatttt ttatccttat cttttaagga gataaatacc acgccttgct ctggcagatg
    15301 attaaacgat gcgatttgac tttttgcgta agaatttgca aaatccttac ttatacccat
    15361 aacttcaccc gttgaacgca tttcagggcc taattctaaa tcacttccgc taagttttgc
    15421 aaatggaaat actgcttctt ttacgctcat atattttgga gttttagggc gtaaaatttt
    15481 agtatcaaaa ttaaccactt tgaaagtatc ataaaatttt aaagcttctt ttaaatttcc
    15541 ttgccacatc acacgcgttg ccacttttgc taaaggaata cccgtagctt tactaacaaa
    15601 aggcacagta cgactagctc taggatttac ttctatcata taaagctcat tattatgtaa
    15661 agcaaattgt atatttaaaa gccctacaac tcctaaattt aaagcaatat ctgcggtttt
    15721 ttgtgcaata aattcttgca ttttttcatc gatattacaa ggtggtaaag aacaagcact
    15781 atcgcctgaa tgaattcctg cttcttctat atgctccata attcctgcca cataaacatc
    15841 tttgccatca caaatcgcat caacatcaat ttctgtagca ttgtctaaaa actgatcgat
    15901 caaaacagga cttttatcac tcacatccac agcttcttgc atatagagtc taagttcggc
    15961 ctcatcattt accacacgca tcgcacgccc acctaaaaca taacttggtc ttacaagcac
    16021 aggatatcct atatcactag ctttaagcac cgcttcttcc acacttgttg cagtggaatt
    16081 ttttggctga ttaataccta gctttgtaat aaattcagca aatttctttc tatcttctgc
    16141 catatcaatt actcttgcac tagtacctat aattttagct ccaaaagcgc ttaaacgctt
    16201 agcaaatttc aaaggagttt gtccgccaaa atgcacaatc actccatcag gtttttcacg
    16261 ctcaatcacc gctcttaaat gttcaaaatc aataggctcg aaatacaaaa tatcacttgt
    16321 atcatagtca gtcgaaacgg tttcaggatt acaattatac ataatagttt taatacccat
    16381 atctttaagc gcaaaagaag catgtacgca agcatagtca aattctatac cttgtcctat
    16441 gcggtttggc cccccgccta taatcatcac ttttttttct tttttatcct tagcatcgtt
    16501 tttactttga gtaagttcgc ttacattaat acttgaataa agataaggag ttaaagcttc
    16561 aaattcaccc gcacaagtat ccacttcgct aaattctgca atgatttttt gcttcattct
    16621 tgcataataa atatcatttt ggcttaattc taaattatct ttcaaattta caagcaaggc
    16681 tatcatttta tctgaaaaac ccatagtttt tgcttttctc aaaagagctt tattgtttaa
    16741 aatatccata tcaatttgct cttcaaaatc tacaatttct ttaatctgtg ttaaaaacca
    16801 aggatctatt ttacaaagct cataaagttc ttctacgcta aaaccttctc taaaagcttg
    16861 agcaacataa agcaaacgct tttcattggc attgcgaatt ttaaaaacaa gatcatttct
    16921 atcttcaaat tttactctat caaaaccact caaagaacgc tcaagagaac aaagtgcttt
    16981 ttgtatactt tctttaaaag tacgtcctat agccatcacc tcacccacac ttttcatagc
    17041 tgtacctaaa gttgtgtttg cccctggaaa tttttcaaaa gtaaagcgag gaatttttgt
    17101 tacaatataa tcaatcacag gctcaaaaga tgcaggagtt cctgtaatat catttttaat
    17161 ctcatctaaa ctaaagccta ctgccaaaag tgtcgcaacc tttgctatag gatagcccgt
    17221 tgccttagaa gctaaagcac ttgatcttga aactcttgga ttcatttcta taactatcat
    17281 tcttccattt tttgggttga tagcaaactg cacattactt ccgcctgtat ctacgccaat
    17341 ttcacgcaaa atagcaaaag aagcattacg cataacttga tattctttat ccgtcaaagt
    17401 taatgctgga gctattgtaa tactatctcc tgtatgaact cccataggat cgatattttc
    17461 tatactacaa actatgatac aattatccgc tctatcgcgt ataacttcca tttcatattc
    17521 tttccaaccc aacaaacttt cttcaatcaa aatttcatgg ataggcgata aagctaaagc
    17581 agtattggca agttctttaa attcgtccat attataaacc acaccacttc cagcacctcc
    17641 taaagtataa gaagcacgga tcatcaaagg aaagccaatt tcatctacag cttttaaagc
    17701 ttcatcataa ttatacgcat acatcgattt tggcaaatcc atgccgattt ttttcataca
    17761 ttctttaaag acctgacgat cttcaccttt tttaatcgcc tcagggtttg cacctaaaaa
    17821 tttcacatct cctaaaagtc cactttcata aacttccata gcaacattta acgctacttg
    17881 tccacccatg gttggtaaaa ttgcatcaat tttttctttt ttaataatac ttaaaatact
    17941 ttcttttgtt atgggttcta tataagtcgc atctgcaaat tcgggatctg tcatgatggt
    18001 tgcaggattt gagttgatta atactacacg atatcctaat tcttttaaag tctttgcggc
    18061 ttgagttcca gaataatcaa attcacaagc ttgtcctatc acaataggac cacttcctat
    18121 aagtaaaatg cttttaatat ctgttcgttt tggcataaat tttcctaaga gcataaattt
    18181 gggctgatta taacaaaaat tagttttata aactttgaaa ttatcgatat aatttaaaaa
    18241 ataaacactc tgcttttaat ctaggaaata atacataaat aaatttaaga ttttttataa
    18301 aattctcatt cgattataaa aatttatttg ataatttaac aaaattttta gcattaaaca
    18361 aagttataat aattagcaaa aatatagaaa atttttaaaa agtctaatcc ttgacttata
    18421 aattatctac tacatataaa taagcaggaa tactaatctt aacataaggc tttacttcta
    18481 cactttgata catatcttca tcatcaattc tattcacaat cccaacaggt atatctgaaa
    18541 agaaaatatt atcaagtcca cttgttaaaa tttcatctcc gatattaatt tttgcccatt
    18601 ttggaataaa tttaaccaca atcctgccat cttcaccttg gattaaacct ggagctttgg
    18661 attttcctat ataaacagaa aaaacacact gatcatcacc ttgtaaaaga gccattgctc
    18721 taccattttt attaatagct atacctgcgg tatatccttg atatatcaaa ccacgatttt
    18781 taccaacggg aattttactc caatctaacc ataatttttt ataatcattc aattgaacat
    18841 aagaaataac tctagttaaa gaaacttgag gtaaatattt tgtagaattt tgatcctcta
    18901 aaatacgatt taattgattt gcaaaactag ttacctttac agcaatatct tctaattctt
    18961 tatttctagc ttttagttgc tgaatttgat ttgcttgatt aaagtgttct gaaatttttt
    19021 ctcccaaata atctttaata ttataaaaat tacctataac aaaatcatta acacggagaa
    19081 cattttgctt aataagtcct ccataataaa aagatataaa aaccaaaaag gctaagacaa
    19141 gaacataaaa aatcttattc ttcattggtt aattgttgta ataatgaaat ttcctctaaa
    19201 gctttacctg ttccttttgc tacagctaaa agcggttcat ctgcgatata aactggcaaa
    19261 cgtacaattt cacttaagta tttatcaaga ccacgaatca atgctccgcc acctgttaaa
    19321 actacaccat tttctactat atcacttgct aaatcaggcg gcatcatttc aagaaccatt
    19381 tttaaagcat cagcaatttc ttttaaatac tcacgcatcg cttctcttac atcttcgctt
    19441 gtaagttcaa tacgacttaa aagtccactt acttgatcgc gtccttttac caccatagaa
    19501 agctcttttg gaagttgtat tgctgaacct atagtgattt taatctcttc gcctgttctt
    19561 tcacctatga taagattgta tttttctttt acataattaa ctatactcat atcaagctta
    19621 tctccagccg tacgaataga ctttgaaatc acaagtccac ccaaagaaat cactccaatc
    19681 tcagtagttc caccccctat atctactacc aaatttcctt taggctcttg tataggtaaa
    19741 cttgcaccaa tagctgctgc cataggctct tcaatcaaaa atacctctct tgcacctgcg
    19801 cttaaagcac tttctcttac cgcttttctt tctacttgag ttaaaccata aggaacagaa
    19861 atgataattc taggacgtaa aaaacttttt ctacggtgtg ttttttctat aaaatagcgg
    19921 atcatttttt cagtcatatc aaaatctgca atcacgccat ctttcatagg acgaatagct
    19981 tcgatattgc ctggagtttt tcccaccata tctttagctt ctttacctac ggctaaaatt
    20041 tttgctttgg aaccatacct ttctctttca actgccacaa cagaaggctc atttatcact
    20101 atacccttat cttttaccaa aactagggta ttagctgttc ctaaatcaat ccccatatca
    20161 ctagaaaaaa atcctataag ttgatctaat atcatttcta tcctttttaa cttatttttc
    20221 tttttattaa taatgccttt gcattgtctt taacaacttc tttggttatt acaatatcat
    20281 agtttttata ctctggtaat tcaaacatta aatctaccat catttcttct ataatacttc
    20341 taagccccct agcccctgtt tttctctcca atgcaagttg tgcgatagct cttagggcat
    20401 cttcttcaaa ttttaaattc actccatcaa tagcaaaaag cttttgatat tgcttaataa
    20461 tggcattttt aggctcagtt aaaattctta ccatatcttc ttcattaagc tcatttaaag
    20521 atgcaatcac atgcaaacga cctataagct caggaatcaa accaaaatgc accaaatcat
    20581 caggttcaat tttctcaagt aaagctttat tttcttcttt tgcatcatca aaaaagccca
    20641 caactttatc gccaagtttt ctttttaaga tagtttccaa accatcaaaa gctccaccac
    20701 aaacaaataa aatatttgaa gtgtcaattt gtataaactc ttgatttgga tgttttcttc
    20761 ccccttttgg tggaatattt accaaacttc cttcgataat cttaagtaaa gcttgttgca
    20821 cgccctctcc acttacatca cgagtaatag aacgattttc actcattcta gcaattttat
    20881 caatctcatc aataaaaact ataccttttt gagctctttg cacatctcca tctgcagctt
    20941 gtaaaagacg tgttaaaata ttttccacat cctcacctac atatcctgct tcagttaaag
    21001 aagttgcatc acaaattgct ataggtacat ctaaaaattt agctaaagtt tgtgccaata
    21061 aagtttttcc acttcctgtt ggcccaacaa gtaaaatatt tgacttaaaa agctctgtat
    21121 catcatcttg aagttcggct ttaaaaagtc ttttataatg attgtatact ccaacactaa
    21181 aaactttttt agctctatct tgtcctatga cataacgatc tagataagct tttaattctt
    21241 ttggagtgat atctttaaat tctgtattat ggctttgttt aggttcttta aattcttttt
    21301 cttctccata aataatacta taagcacctt caacgcaata ttcacaaata aaagcatcat
    21361 cattttcatt tgctaaaatt cttctttgtg gattctccac ttcattgcaa aaactacatt
    21421 ttctaggcat tatttttacc cctatagaca ggaattccgc gctttgtttc taatataaaa
    21481 tggcacattt ttttaacatt ttcactttct tgattttcaa gcaaattttt agcattttct
    21541 tttaagtctc cttgtctaaa taaagtttta aaagctctgc taagtctatc tacttcatct
    21601 ttatcaaaac gacgacgaat acctactaaa tttaaacttc taatacttgc acgatttcct
    21661 tctgctaaac aaaacggtac tatatcctga gaaagtgcac ttgctcctgc tatcatacaa
    21721 ccctcaccta ctttgacaaa ttgatgaata ggtgtaatcc cgcctacaac cgtaaaatct
    21781 ccaagctcta catgtcctgc taaagttgca ttattagcta aaataatatt attacctaaa
    21841 agacaatcat gagcaatatg acaataagcc ataataaaag cattatcgcc tatacgagta
    21901 aaaccatctc ctttagctgt acctgaattt atcgttgcaa attctctaat agttgcgttt
    21961 tttcctataa caacaccgct tttttgttct tctttataag atatatcttg aggaatatca
    22021 cctactatgg cataagaaaa cacacgagaa tgatcgccta tagttgtatc tgaaagaatt
    22081 cgagcacctt gtttgatgac aacatcatta cctattttag tatctttacc tacataagca
    22141 taagcttcta ttacaacatc gtcaccaagt tgtgcaccct cttcaatcac cgcacttgga
    22201 tgaatttttt tcattattta tccactatca tagctttaag ctcggcctct gcaactaaat
    22261 ttccatctac aaaagcttgc cctttaaaaa tccacatatt accacgattt ttaaccacgc
    22321 tcatttcata atcaagtcta tctccaggac gcacaggatt tctaaatttt gctccatcta
    22381 tgcctgtgaa ataaactact ttactttttg gatccacttt atcttccata ctttcaaaag
    22441 ctaaaactcc acctgtttga gccatacctt ctaaaatcaa aactccagga taaataggat
    22501 gccctggaaa atgtcccata aaaacatggt cacttatgct gatgttttta tatcctcgaa
    22561 ccacttcttt aacttttaat tctgtaattt tatctactag taaaaaagga taacggtgtg
    22621 gtaagatttc tt
//
LOCUS       DAEBKH010000008        22381 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.008, whole genome shotgun sequence.
ACCESSION   DAEBKH010000008 DAEBKH010000000
VERSION     DAEBKH010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22381
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.008"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..1508
                     /locus_tag="KIL20_000205"
     CDS             <1..1508
                     /locus_tag="KIL20_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720275.1"
                     /translation="FYDAVLFGEIYGGRTLQGNAEKNSIEVYHFNSLDHLNKNIKTHA
                     SLNLYGGYSNDGEANGNKIVFRLKKPLKISDNFYGKNYYNLYGGFATEGANFNVIDIQ
                     NDLTYEKVPQNYSDKFTVYAARTLSGKANNNILSIKDSVISLPLYAFITSETTLDGID
                     YIADESNNNEVNFENIKSSKNLSLMINAKNVSNNKINYNLIQSLTEASSLGKGSKIIL
                     KATQNANNNLIKLKDCSSAAVESSCIIKADKESAFNKIIINNTAFSTASDKRQGYVGL
                     IAGVSANSHDNIMELVNLNIDEYKNQDAIFLAPSGTSDISNFKSYNNTLYLGGELNFF
                     KDVNIDLLSGSVFHEVNKKGKIITQILPHQEDFSKNNRLIIDTQDVKSEVVNNFENFT
                     FILPNKIKNPILTIEKLINLPANGSMEILTKNKPTKGKYILIQSDVGIYDGDNRLLNQ
                     QELENLLEKMKNNKNKFNYNKIEKLAKSTLKNVNFSFEVSDDAKIIYINIL"
     gene            1520..3214
                     /locus_tag="KIL20_000206"
     CDS             1520..3214
                     /locus_tag="KIL20_000206"
                     /inference="COORDINATES: protein motif:HMM:NF017658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HBD2720276.1"
                     /translation="MKKMSKHIVLSFAVSSLLFSQAYALPQGGKFTHGTSGTIHTSGN
                     TVTITGKGQNHVIQWGGGFNIGQNESVNFNGKNQNYLNIAYQKDASKIDGALNGGNNN
                     IFLVNPMGVLIGKTGTITAGKFVASTTPLSDDNVKTFLEKGAGFSPAFDVSKQGNIIN
                     LGKINADNIVLIGNKVEIGVGAELAGQDGQTNAKTAHLIGNYVYVSVGKDKENKNTIK
                     IDKDGFKGTAIVEGFMQRDMTSFANDKYQFGDFGTILKSSCNGKESQNFYKAITIGGW
                     ENDKNIQEWILFSNGWNKDELNGIFKDDLTTVRLVSDIDFGYKNAVDPVGASKYAFSG
                     IFDGGNYTLKNILINAQNTDKGWNTGIFGKVEGKDGNNKAKIYNLNVDGLKFSGKTNS
                     GGAFVGQSSNADFSNIHLKNIGDLIFFDPNSKNETSGFLYGGGFVGYAKSGSSFNRIS
                     LDNFSKIALQPEGKFSSAYIDIYLGGFAGYSEGSNFSNILLNNIGGVTILGSETGGNI
                     FAGGFVGYAGDKSYFSQIDLKNIGSVQADGKTFVKHAGAGGFAGAINGTNSFEKFL"
     gene            3787..4668
                     /locus_tag="KIL20_000207"
     CDS             3787..4668
                     /locus_tag="KIL20_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720277.1"
                     /translation="MKDMEINKQIIAILEKDGVVSKDYNNGYVSYYDGNAKITPEVPD
                     FKDPVLSQNDFDPKLLQRILDDLMNGKYTYDFDTKTWTYTDSKGVVGKDEASEITQSL
                     NFLNAFKDTGVEQEFINLWKNSQDQNYKNYANLYEKWTQKKTAMDKIKTGEGYFASFK
                     EELQKYQEALAQLDKENKNYEKIKESGLVSDETLKVMYEKLLEQKEALEKQFADLSGN
                     EGFHYKLENEILNSQGFAINGSDVDGKAYIGNFNFKGKLASLPEKPNISIYEPDKQGG
                     EDPANLLYCRLKFLKRL"
     gene            4638..4823
                     /locus_tag="KIL20_000208"
     CDS             4638..4823
                     /locus_tag="KIL20_000208"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720278.1"
                     /translation="MPPEIPEKVVEAPIKIQTEVDAKKEEDDDQVEIGEADARSSGLR
                     CIVSDNFKTMNICVNAK"
     gene            4833..6521
                     /locus_tag="KIL20_000209"
     CDS             4833..6521
                     /locus_tag="KIL20_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HBD2720279.1"
                     /translation="MRKILVVLVLLQVFSHAEELNNNKIRELIESSPEANEPQNKNLK
                     NTLKNQKSPVNFKEQNTTNITNSQTDQNEAKVFVREYVLHIDNKDLTFKKLRISEKEI
                     QDAIAEYRNQELSLQNLKDITNIIAYYCQVSGYPSATAYIPPQDLSSNKVQINIAFGT
                     LGKVIIKNNSGVRDYALESKLNKNLKGKVITTKNVENEIYKINEIYGIQTNANLQSGD
                     GYGESDVIIEVNKGDSATLTLYSNNYGTKETGRFRAGMSQSLNNIARQGDNLNFYLQD
                     SDENQIDYGINYSTFIGNLKITPFATQGHYVLGGIYRNLGFYGDSMNVGVNFSYPVFL
                     YTEYSLYLVSGFTHKKIKDYYLDGLVSNEKASNSVNLGIEGTYKGLENNVLSYTLNFT
                     YGNVENDGDSSGFNGVNLGNFGKMNLNLSNEYQFQERLTHIFQLNYQKVIGGAVLDSS
                     ESVSLGGPYGVRAYLEGEGSADNVVSGTLGIRFQTPLEGLYLTPFYDIGYSWYENKEY
                     QSENHYFMDAMGMQILYTRSANFYVKMDAARAVHRFKHDGEHRARVYVSLGKYF"
     gene            7032..8544
                     /locus_tag="KIL20_000210"
     rRNA            7032..8544
                     /locus_tag="KIL20_000210"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            8647..8722
                     /locus_tag="KIL20_000211"
     tRNA            8647..8722
                     /locus_tag="KIL20_000211"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8680..8682,aa:Ala,seq:tgc)
     gene            8731..8807
                     /locus_tag="KIL20_000212"
     tRNA            8731..8807
                     /locus_tag="KIL20_000212"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8765..8767,aa:Ile,seq:gat)
     gene            9343..12249
                     /locus_tag="KIL20_000213"
     rRNA            9343..12249
                     /locus_tag="KIL20_000213"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            12524..12640
                     /gene="rrf"
                     /locus_tag="KIL20_000214"
     rRNA            12524..12640
                     /gene="rrf"
                     /locus_tag="KIL20_000214"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(12821..14029)
                     /locus_tag="KIL20_000215"
     CDS             complement(12821..14029)
                     /locus_tag="KIL20_000215"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HBD2720280.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPSKHKLIQKAKNLQSEYDFFYDIMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVIGGNVGTPLAELDPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVILPKIYANTPTKAHKISYKDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYELLNSFVMEKNKLEELKDSQNR
                     LWVNDTKATNESAVMAALNRYKDKKIHLIIGGDDKGVDLSNLFDFMKNFNIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYVERG
                     KVFKECVNKI"
     gene            complement(14029..15090)
                     /locus_tag="KIL20_000216"
     CDS             complement(14029..15090)
                     /locus_tag="KIL20_000216"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HBD2720281.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKDNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIVFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAII
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            15170..16648
                     /locus_tag="KIL20_000217"
     CDS             15170..16648
                     /locus_tag="KIL20_000217"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HBD2720282.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLQKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDTCLGEIVECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            16720..17463
                     /gene="fabG"
                     /locus_tag="KIL20_000218"
     CDS             16720..17463
                     /gene="fabG"
                     /locus_tag="KIL20_000218"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HBD2720283.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELGYLVNNAGVTNDKLALRM
                     KLEDFSSVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            17470..17880
                     /locus_tag="KIL20_000219"
     CDS             17470..17880
                     /locus_tag="KIL20_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HBD2720284.1"
                     /translation="MMDLKEIAQFLDDNVPAFLATLGTCGNPRVRPIQSPLLVRDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFEKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGEFKLFKA"
     gene            18217..20052
                     /locus_tag="KIL20_000220"
     CDS             18217..20052
                     /locus_tag="KIL20_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HBD2720285.1"
                     /translation="MGEFSRRDFIKTACISVGALAASSSGVYALDDSSKMDKDTNLPS
                     CDVLVIGSGGAGLRAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVMDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FGKGAKTHELAQKWQARFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKNLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDVVVTEFSLDGRRVQ"
     gene            20049..21014
                     /locus_tag="KIL20_000221"
     CDS             20049..21014
                     /locus_tag="KIL20_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HBD2720286.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEDEIEGHKDLVKMIKAAQEAAVKE"
     gene            21018..21875
                     /locus_tag="KIL20_000222"
     CDS             21018..21875
                     /locus_tag="KIL20_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HBD2720287.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLTKAKNTLDKGAKERIN
                     TFLAQGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDAF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTSSKARLPMIHLSQLVGLALGLSKEMVGLDY
                     NIIDASKIA"
     gene            complement(21899..>22381)
                     /locus_tag="KIL20_000223"
     CDS             complement(21899..>22381)
                     /locus_tag="KIL20_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HBD2720288.1"
                     /translation="NTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELNIKDESL
                     VNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYKEWIL
                     TYGSENFQNEAKEFEDFVNSYTSSVSAQKFQKLSEIFHTATRLEVAFWEHSLRMELNL
                     "
BASE COUNT         7717 a         3163 c         4553 g         6948 t
ORIGIN      
        1 ctttttatga tgctgtttta tttggagaaa tttacggtgg aagaacatta cagggtaatg
       61 cagagaaaaa ttctatagaa gtttatcatt ttaactcatt agatcatctt aataaaaaca
      121 ttaaaacaca tgcatcgtta aacctctatg gtgggtattc taacgatggt gaagctaatg
      181 gaaataaaat tgtatttcgc cttaaaaaac ctttaaaaat cagtgataat ttttatggaa
      241 aaaattatta caatctttac ggaggttttg ctacagaggg tgcgaatttt aatgttattg
      301 atatacaaaa tgatttaacc tatgaaaaag ttccacaaaa ttattctgat aaatttactg
      361 tatatgcggc aagaacttta agcggaaaag caaataataa tatcttaagt ataaaagatt
      421 ctgttatttc attgccttta tatgctttta ttacaagtga aactacgcta gatggtatag
      481 actatatcgc cgatgaatca aacaataatg aagtaaattt tgaaaatatt aaatcatcta
      541 aaaatttaag tttgatgatc aatgctaaaa atgtttcaaa taataaaata aattataatc
      601 tcattcagag tttaaccgaa gcgagttctt taggaaaggg ctcaaaaatt attttaaaag
      661 caactcaaaa tgcaaataac aaccttataa agcttaaaga ttgttcttcg gctgccgtgg
      721 aaagttcgtg catcataaaa gcagataaag aaagtgcttt taataaaatt atcatcaaca
      781 acacagcttt tagtactgcc tcggataaaa gacaaggtta tgtggggttg atagctggag
      841 tgtctgcaaa ttctcatgat aatatcatgg aacttgttaa tttaaatata gatgagtata
      901 aaaatcaaga tgctatattt ttagctccat ctggaacttc ggatatttca aattttaaat
      961 cttataacaa tactttatat ttaggtggag agttaaattt ctttaaagat gtaaatatcg
     1021 atttgctttc tggttctgtt tttcatgaag taaataaaaa aggcaaaata atcactcaaa
     1081 ttctaccgca tcaagaagat ttttctaaaa acaatcgttt gattatagat actcaagatg
     1141 ttaaatcaga agtggtaaat aactttgaaa attttacttt tattttgcca aataaaataa
     1201 aaaatcctat cttaactata gaaaaactta tcaatcttcc tgcaaatgga agtatggaaa
     1261 ttcttactaa aaataaacca acaaaaggaa aatatattct catacaaagt gatgttggaa
     1321 tttatgatgg tgacaataga ttgttaaatc aacaagaatt agaaaatttg ttagaaaaaa
     1381 tgaaaaataa taaaaataaa tttaattata acaagataga aaagttggct aaaagtacat
     1441 tgaaaaatgt aaattttagc tttgaagttt cagatgatgc aaaaataatt tatatcaaca
     1501 tactttaaag gagagtaaca tgaaaaagat gagtaaacat atagttttat catttgcggt
     1561 gagttcttta ctcttttctc aagcttatgc tttaccacaa ggaggtaaat ttactcatgg
     1621 tacaagtggg actatccata cctctggaaa tactgtaacg attacaggaa aaggacaaaa
     1681 tcatgttatc caatggggtg gtggttttaa tataggacaa aatgaaagtg taaattttaa
     1741 cggcaaaaat caaaactacc taaacattgc ttatcaaaaa gatgcttcta agatagacgg
     1801 agctttaaat ggtgggaata acaatatctt tttggttaat cctatgggag ttttgattgg
     1861 caaaacagga actatcactg cgggaaaatt tgtagctagt acgacgcctt taagtgatga
     1921 taatgtcaaa acttttttag agaaaggagc tggtttttct ccagcatttg atgtaagtaa
     1981 gcaaggaaat attatcaatc ttggaaagat taatgcagat aatattgttt taataggaaa
     2041 taaggttgaa ataggagtag gagcggagct agcggggcaa gatgggcaaa ctaatgctaa
     2101 aacagctcat ttaataggaa attatgttta tgttagtgta ggaaaagata aagagaataa
     2161 aaatactatt aaaattgata aagatggctt caaaggcacg gctattgttg agggatttat
     2221 gcaaagggat atgacaagtt ttgcaaatga taaatatcaa tttggagatt ttggtactat
     2281 tttaaagtct tcttgcaatg gaaaagagag tcaaaatttt tataaagcca tcactattgg
     2341 tggttgggaa aatgataaaa atattcaaga atggatttta ttttcaaatg gttggaataa
     2401 agatgaatta aatggaattt ttaaagatga tttaacaact gtaagattag ttagcgatat
     2461 agattttgga tataaaaatg cagtagatcc tgtgggtgca agtaaatatg cctttagtgg
     2521 aatttttgat ggtggaaatt atactttaaa aaatatactt atcaatgctc aaaacacaga
     2581 caaaggatgg aatactggta tttttggtaa agttgaagga aaagatggta acaataaggc
     2641 taaaatttat aatcttaatg tcgatggttt aaaatttagc ggaaaaacaa attctggagg
     2701 agcttttgtt gggcaaagct ctaacgcaga ttttagcaat attcatttaa aaaatattgg
     2761 agatttaatt ttctttgatc caaattctaa aaatgaaacc agtggatttc tttatggtgg
     2821 tggttttgta ggttatgcta aaagcggttc tagttttaat cgtattagtt tagataattt
     2881 ttctaaaatc gcactacagc cagagggtaa atttagcagt gcgtatattg atatttactt
     2941 aggtggtttt gctggctatt cagaaggtag taatttttct aatattttat taaacaatat
     3001 tggcggagta acgattttag gttcggaaac aggtggtaat atttttgcag gtggttttgt
     3061 aggttatgct ggagataaat catatttttc tcaaattgat ttaaaaaata taggtagtgt
     3121 tcaagcagat ggtaaaactt ttgtcaagca tgctggcgca ggaggttttg ctggagctat
     3181 aaatggaact aattcttttg aaaaatttct ttaataaatt ttggagatat tattgcgaaa
     3241 agaggatatg tttgggttgt taacggtaac tttaaagtag gttccggcgg ttttatagga
     3301 cttttaaatc ctttagatga taaaatttta tatgtcgatt ttaaaaatat attattaaac
     3361 tttgatcaaa aaatgcaaat ttacgctaaa gctggagatg gagcttcgag ctattttcca
     3421 gatttaaata actgggagta taatttttct ggtggatttt ttgggggatt gtttacatca
     3481 aaagttggga gagcaaattt taataatatt caacttaaat ttggacaaga tgtaagtatt
     3541 attgctcaaa agtttcgttc aaattctaat gaaaaatatc aaggtttatt ctatgggtac
     3601 tctgtgaaaa attggaatga tggaattatg aaaacggata atgttgctat ctattatgaa
     3661 aaaaattata acactaatca atataattgg tattatcaag atatcaaaga tggctttttt
     3721 gggagtgcta taaatgatta tgcttacaaa gatggcagat catatgaatt ttatgattat
     3781 aatgtgatga aagatatgga gataaataaa caaattatag ctattcttga aaaagatgga
     3841 gtggttagta aggattataa caatggatat gtttcttatt atgatggtaa tgcaaaaatt
     3901 actccagaag tgcctgattt taaagatccc gttttatctc aaaatgactt tgaccctaaa
     3961 ttgcttcaaa gaattttaga tgatttgatg aatggaaaat acacttatga ttttgatacc
     4021 aaaacttgga cttacacaga tagtaagggt gtggtaggaa aagatgaggc tagtgagatc
     4081 actcaaagtt taaatttctt aaatgcgttt aaagatactg gagtagaaca agaatttata
     4141 aatttgtgga aaaattctca agatcaaaat tataaaaatt acgccaatct ttatgaaaaa
     4201 tggacgcaaa agaaaactgc tatggataaa atcaaaaccg gcgaaggtta tttcgctagt
     4261 tttaaagaag aattacaaaa ataccaagaa gccttagctc aacttgacaa agaaaataaa
     4321 aactatgaaa aaatcaaaga atcaggctta gttagcgatg aaacacttaa agttatgtat
     4381 gaaaaacttt tagaacaaaa agaagctctt gaaaagcagt ttgcggatct tagtggaaat
     4441 gaaggatttc actataagct tgaaaatgaa attttaaatt ctcaaggttt tgctataaat
     4501 ggaagtgatg tagatggtaa agcatacatt ggaaatttta attttaaagg aaaattagct
     4561 tcattgccag aaaaaccaaa tatatctatc tatgagccag ataaacaagg gggtgaagat
     4621 ccagcaaacc ttctgtattg ccgcctgaaa ttcctgaaaa ggttgtagaa gctcctataa
     4681 aaattcaaac cgaagtagac gcaaaaaaag aagaagatga tgatcaagta gaaataggag
     4741 aagcagatgc tagaagtagt ggtttgcgtt gtattgtaag tgataatttt aagacaatga
     4801 atatttgtgt aaatgcaaaa taggaaataa aaatgagaaa aattttagtt gttttagtct
     4861 tattgcaagt attttcacat gctgaagagt taaataataa taaaataaga gagcttatag
     4921 aaagctctcc tgaagcaaat gaaccacaaa ataaaaattt aaaaaataca ttaaaaaatc
     4981 aaaaaagccc tgtaaatttt aaagagcaaa atactacaaa tattacaaat tcacaaactg
     5041 atcaaaatga agctaaggtt tttgtaagag agtatgtttt gcatatcgat aataaagatt
     5101 tgacatttaa aaaattaaga attagcgaaa aagaaattca agatgcaata gctgaatatc
     5161 gcaaccaaga gttaagctta caaaatttaa aagatataac aaacattata gcttattatt
     5221 gtcaagtaag tggctatcct tcggcaactg cttatatacc accacaagat ttaagttcta
     5281 acaaagtgca aattaacata gcttttggaa ctttaggaaa agtaatcatt aaaaacaact
     5341 caggtgtgag ggattatgct ttagagagta aattgaacaa aaatcttaaa gggaaagtta
     5401 tcacaactaa aaatgtggaa aatgaaattt acaaaatcaa tgaaatatac ggaatccaaa
     5461 ccaatgctaa tttacaatca ggtgatggtt atggagaaag cgatgttatt atagaagtaa
     5521 acaaaggtga tagtgcaact ttaactttat attctaacaa ctatgggacc aaagaaacag
     5581 gtcgttttag agcaggaatg agtcaaagtt taaacaatat agcaagacaa ggggataact
     5641 taaattttta tcttcaagat agcgatgaaa atcaaataga ttatgggatt aattatagta
     5701 cttttatagg aaatttaaaa attactccat ttgcaactca aggacattat gttcttggtg
     5761 gaatttatag aaatcttggt ttttatgggg actctatgaa tgttggagta aatttttctt
     5821 atcctgtgtt tttatatacc gagtattctt tatatcttgt ttcgggtttt actcataaaa
     5881 agattaaaga ttattatctt gatggtttag taagtaatga aaaagcgagc aatagtgtaa
     5941 atttaggcat agaaggaact tataaaggtt tggagaataa tgtcctaagt tataccttaa
     6001 attttacata tggcaatgtt gaaaacgatg gtgattcttc tggatttaat ggagtaaatt
     6061 tagggaattt tggaaaaatg aatttaaatt taagcaacga atatcaattc caagaacgct
     6121 taactcacat ttttcaactc aattatcaaa aagttatcgg tggtgctgtt ttagatagta
     6181 gtgaatccgt gtctttaggt ggaccttatg gtgtgcgtgc ttatttagaa ggcgagggga
     6241 gtgcggataa tgttgtttct ggcaccttag gaataagatt tcaaacacct ttagaagggc
     6301 tttacttgac tcctttttat gatataggat attcttggta tgaaaataaa gaatatcaaa
     6361 gcgaaaatca ttattttatg gatgcaatgg gtatgcaaat actctataca agaagtgcta
     6421 atttttatgt aaaaatggat gctgcaagag ctgttcatcg gtttaaacac gatggagaac
     6481 atcgagcaag agtttatgta agcctaggaa aatactttta actttggggt gattggagaa
     6541 atttctaccc cccccccatt tttcaaccca ccaaatactt atataaatac ttacacaaat
     6601 atttatacta tttaatcctt tatttaatcc ccttttaagt ttaattggtt atactttcat
     6661 ttcctttttt gaaaaaagga cttaaaatct tttaaattat aaagtttcac tagcttagta
     6721 gattttataa attaactctt ttggttttta tcttataaac taaaagcttt tttataaatc
     6781 ttgtttttta atttaaaaac ttttctttta aaaatgattt tttgttttgt tcttttaatt
     6841 tagtattgtt attcaaatct tattagtcaa tctttgaaat ctaaataagt gatcgattga
     6901 gccagataaa gatttaggca taagcaatta tgtaaaatct attcaatcta ataatgaaaa
     6961 agattaaaaa cttttctttt aatctttcat aactttttct ttgaagaaaa agattaaact
     7021 atctataatt ttttatggag agtttgatcc tggctcagag tgaacgctgg cggcgtgcct
     7081 aatacatgca agtcgaacga tgaagcttct agcttgctag aagtggatta gtggcgcacg
     7141 ggtgagtaag gtatagttaa tctgccctac acaagaggac aacagttgga aacgactgct
     7201 aatactctat actcctgctt aacacaagtt gagcagggaa agtttttcgg tgtaggatga
     7261 gactatatag tatcagctag ttggtaaggt aatggcttac caaggctatg acgcttaact
     7321 ggtctgagag gatgatcagt cacactggaa ctgagacacg gtccagactc ctacgggagg
     7381 cagcagtagg gaatattgcg caatggggga aaccctgacg cagcaacgcc gcgtggagga
     7441 tgacactttt cggagcgtaa actccttttc ttagggaaga attctgacgg tacctaagga
     7501 ataagcaccg gctaactccg tgccagcagc cgcggtaata cggagggtgc aagcgttact
     7561 cggaatcact gggcgtaaag ggcgcgtagg cggattatca agtctcttgt gaaatctaat
     7621 ggcttaacca ttaaactgct tgggaaactg atagtctaga gtgagggaga ggcagatgga
     7681 attggtggtg taggggtaaa atccgtagat atcaccaaga atacccattg cgaaggcgat
     7741 ctgctggaac tcaactgacg ctaaggcgcg aaagcgtggg gagcaaacag gattagatac
     7801 cctggtagtc cacgccctaa acgatgtaca ctagttgttg ggatgctagt catctcagta
     7861 atgcagctaa cgcattaagt gtaccgcctg gggagtacgg tcgcaagatt aaaactcaaa
     7921 ggaatagacg gggacccgca caagcggtgg agcatgtggt ttaattcgaa gatacgcgaa
     7981 gaaccttacc tgggcttgat atcctaagaa ccttatagag atatgagggt gctagcttgc
     8041 tagaacttag agacaggtgc tgcacggctg tcgtcagctc gtgtcgtgag atgttgggtt
     8101 aagtcccgca acgagcgcaa cccacgtatt tagttgctaa cggttcggcc gagcactcta
     8161 aatagactgc cttcgtaagg aggaggaagg tgtggacgac gtcaagtcat catggccctt
     8221 atgcccaggg cgacacacgt gctacaatgg catatacaat gagacgcaat accgcgaggt
     8281 ggagcaaatc tataaaatat gtcccagttc ggattgttct ctgcaactcg agagcatgaa
     8341 gccggaatcg ctagtaatcg tagatcagcc atgctacggt gaatacgttc ccgggtcttg
     8401 tactcaccgc ccgtcacacc atgggagttg atttcactcg aagccggaat actaaactag
     8461 ttaccgtcca cagtggaatc agcgactggg gtgaagtcgt aacaaggtaa ccgtaggaga
     8521 acctgcggtt ggatcacctc ctttctagag tacaaagtaa taagtctcac aactattact
     8581 tcaatatata aactcaattg attcttgttt agatttcaaa gattgatgat aaagctaatt
     8641 gtttatgggg aattagctca gctgggagag cgcctgcttt gcacgcagga ggtcagcggt
     8701 tcgatcccgc tattctccac catttattaa gggcctatag ctcagctggt tagagtgcac
     8761 ccctgataag ggtgaggtca caagttcaag tcttgttagg cccaccataa aaaagatttg
     8821 aataaaaaag ctttaaaatc taaagcaagt atataaagta gattaaatat aaaatataaa
     8881 ctctatactt agatttattt ttatctttag ctataaaaga atatacttta atagatataa
     8941 atagcatata cattatgtat ttatatttat aatgagatta tattaatata tatacttcct
     9001 ttaggtttta aacctaatgt tctttttaat tatcattgtt aagagtcaca agcaagtttt
     9061 aataaaaaca attttacagg acttgttaaa ggataaaacc tatttatctt ttctttagtt
     9121 taacttatat cttttaatta tctttatttc tataataaag agaatattag atttaagatt
     9181 tataaattaa agacaagttt caaactcaca gcttagttga gactaaatca tttagtttta
     9241 tattaagtgt ttgaatgctt tccgtcttaa gataaagaag tcttatcata aaaactttaa
     9301 caaggaagtg atgcgtttta gaatcaataa aaaaggtaaa aaaggtaagc tactaagagc
     9361 gaatggtgga tgccttgact ggtaaaggcg atgaaggacg tactagactg cgataagcta
     9421 cggggagctg tcaagaagct ttgatccgta gatttccgaa tggggcaacc caatgtatag
     9481 agatatacat tacctatata ggagcgaacg aggggaattg aaacatctta gtaccctcag
     9541 gaaaagaaat caatagagat tgcgtcagta gcggcgagcg aaagcgcaag agggcaaacc
     9601 cagtgcttgc actgggggtt gtaggactgc aatgtgcaag aggtaagttt agcagaacat
     9661 tctggaaagt atagccatag agggtgatag tcccgtatgc gaaaaacaaa ccttagctag
     9721 cagtatcctg agtagggcgg gacacgagga atcctgtctg aatccgggtc gaccacgatc
     9781 caaccctaaa tactaatacc agatcgatag tgcacaagta ccgtgaggga aaggtgaaaa
     9841 gaactgaggt gatcagagtg aaatagaacc tgaaaccatt tgcttacaat cattcagagc
     9901 cctatgtagc aatacagggt gatggactgc cttttgcata atgagcctgc gagttgtggt
     9961 gtctggcaag gttaagcaaa cgcgaagccg tagcgaaagc gagtctgaat agggcgctta
    10021 gtcagatgct gcagacccga aacgaagtga tctatccatg agcaagttga agctagtgta
    10081 agaactagtg gaggactgaa cccataggcg ttgaaaagcc ccgggatgac ttgtggatag
    10141 gggtgaaagg ccaatcaaac ttcgtgatag ctggttctct ccgaaatata tttaggtata
    10201 gcgttgtgtc gtaatataag ggggtagagc actgaatggg ctagggcata caccaatgta
    10261 ccaaacccta tcaaactccg aataccttat atgtaatcac agcagtcagg cggcgagtga
    10321 taaaatccgt cgtcaagagg gaaacaaccc agactaccag ctaaggtccc taagtcttac
    10381 ttaagtggaa aacgatgtga agttacttaa acaaccagga ggttggctta gaagcagcca
    10441 tcctttaaag aaagcgtaat agctcactgg tctagtgatt ttgcgcggaa aatataacgg
    10501 ggctaaagta agtaccgaag ctgtagactt agtttactaa gtggtaggag agcgttctat
    10561 ttgcgtcgaa ggtataccgg taaggagtgc tggagcgaat agaagtgagc atgcaggcat
    10621 gagtagcgat aattaatgtg agaatcatta acgccgtaaa cccaaggttt cctacgcgat
    10681 gctcgtcatc gtagggttag tcgggtccta agtcgagtcc gaaaggggta gacgatggca
    10741 aattggttaa tattccaata ccaacattag tgtgcgatgg aaggacgctt agggctaagg
    10801 gggctagcgg atggaagtgc tagtctaagg tcgtaggagg ttatacaggc aaatccgtat
    10861 aacaatactc cgagaactga aaggcttttt gaagtcttcg gatggataga agaacccctg
    10921 atgccgtcga gccaagaaaa gtttctaagt ttagctaatg ttgcccgtac cgtaaaccga
    10981 cacaggtggg tgggatgagt attctaaggc gcgtggaaga actctcttta aggaactctg
    11041 caaaatagca ccgtatcttc ggtataaggt gtggttagct tcgtactagg atttactccg
    11101 aaagcgaaga aacttacaac aaagagtccc tcccgactgt ttaccaaaaa cacagcactc
    11161 tgctaactcg taagaggatg tatagggtgt gacgcctgcc cggtgctcga aggttaattg
    11221 atggggttag cattagcgaa gctcttgatc gaagcccgag taaacggcgg ccgtaactat
    11281 aacggtccta aggtagcgaa attccttgtc ggttaaatac cgacctgcat gaatggcgta
    11341 acgagatggg agctgtctca aagagggatc cagtgaaatt gtagtggagg tgaaaattcc
    11401 tcctacccgc ggcaagacgg aaagaccccg tggaccttta ctacagcttg acactgctac
    11461 ttggataaga atgtgcagga taggtgggag gctttgagta tatgacgcca gttgtatatg
    11521 agccattgtt gagataccac tctttcttat ttgggtagct aaccagcttg agttatcctc
    11581 aagtgggaca atgtctggtg ggtagtttga ctggggcggt cgcctcccaa ataataacgg
    11641 aggcttacaa aggttggctc agaacggttg gaaatcgttc gtagagtata aaggtataag
    11701 ccagcttaac tgcaagacat acaagtcaag cagagacgaa agtcggtctt agtgatccgg
    11761 tggttctgtg tggaagggcc atcgctcaaa ggataaaagg taccccgggg ataacaggct
    11821 gatctccccc aagagctcac atcgacgggg aggtttggca cctcgatgtc ggctcatcgc
    11881 atcctggggc tggagcaggt cccaagggta tggctgttcg ccatttaaag cggtacgcga
    11941 gctgggttca gaacgtcgtg agacagttcg gtccctatct gccgtgggcg taagaagatt
    12001 gaagagattt gaccctagta cgagaggacc gggttgaaca aaccactggt gtagctgttg
    12061 ttctgccaag agcatcgcag cgtagctaag tttggaaagg ataaacgctg aaagcatcta
    12121 agcgtgaagc caactctaag atgaatcttc tctaagctct ctagaagact actagtttga
    12181 taggctgggt gtgtaatgga tgaaagtcct ttagctgacc agtactaata gagcgtttgg
    12241 cttatcttta ataaagcatc acttccttgt taaggttttt aagaagactt tgaatataga
    12301 taatatttag agtttaatag aaatctttca agtagagttt gtattagaac ttgctcttaa
    12361 cattgttttt taagtattct atataaaaac ttatcaaaga taaaagataa gaaaaaaata
    12421 aataaaaaca aaagaagaaa gagaataaag aaaaaagtaa agaaataaaa gattaagctt
    12481 tattttttaa attcaatctt tcaaagaata tttaaataac aatgtccgtg attatacaga
    12541 tgtggaaacg ccttgctcca tcccgaacca agaagctaag cacatcgtgg gtgatgatac
    12601 tacgccttac tggcaggggg aaagtagctc attgcggact tgttaaatgt cttcattact
    12661 tactttatat ataaatccta tgtttatttt tattgttgtt ttagatggtg tttgaaatag
    12721 tgtttaaaaa agagtttgct gctggttagg gtttttagag agaatagggt gtttttaggg
    12781 tttggaaagt ttaatatatt tgtatggatt gtataataaa ttaaatttta ttcacacatt
    12841 ctttaaagac ttttccacgc tctacgtaag agttgaactg atctaaactt gcgcaagcgg
    12901 gacttaaaag agccacttca ttgactctta agtgatttga aatttcattt acagctttag
    12961 ataaaacttc acatttatag gctttcaaat tcgctttttt tgcataatca agcatttttt
    13021 cggtactaat acctatagca tagagttcta tgttaaaatt tttcataaaa tcaaataaat
    13081 tgctaagatc tacaccctta tcatctcccc ctatgataag atggattttt ttatctttat
    13141 agcgattaag tgcagccatt accgcgcttt catttgtggc tttagtgtca tttacccaaa
    13201 gtctattttg actgtcttta agctcttcaa gtttattttt ttccattaca aagctattta
    13261 aaagctcata gcttaaagta tcaagtagaa ttttttctat agctaaagcc atgatagcat
    13321 cgagtaaaaa aggactttta aaggaaattt tttccgtatc aatgccaaat ttaacagcta
    13381 gatctttttc atctttatag cttattttat gagcttttgt tggagtattt gcataaattt
    13441 taggcagtat tactacatcg cattcattca ttctttttaa aacgcttagc ttatcttgaa
    13501 cataattatc aaaacttcca tgccaagaaa gatgatcagg acttataggt aaaagtgcat
    13561 aaatttcagg tttagcttta tgagtgtagt gtagggtgaa agatgaagtt tcaagtatcc
    13621 aaagttttgc ataaggatca agctctgcta aaggagttcc aacatttcca cctataacag
    13681 caccaatgtg tgataataaa tgtgtagcca tttgagtggt agtagttttg ccattggttc
    13741 cgcttatcca aacggatttt ggcatgatat cataaaaaaa gtcatattcg ctttgtaaat
    13801 tttttgcttt ttgaatgagt ttgtgctttg atggaaaacc tggactagga atttcaatat
    13861 cgcttaaatt atcatcaaaa tcattaggat ttaaaagtaa atttcctagt gtatcttttt
    13921 ttgtttctgt aaaatgatca tcatagatat caaaaggccc aaatttatct accaaatttt
    13981 cagcaatagc gcgtgtggtt tttccgtatc caaaaagtga aattttcatt atcttagctt
    14041 tattgatgca agtgcaagta aatttgaaag taaggctatc atccaaaaac gcactataat
    14101 tttattttct acccagccaa ctttttcaaa atgatgatga ataggtgcca ttttaaatac
    14161 tcttttatta aaaattttaa aacttccaac ttgtaaaatt acagaaacag tttcaagaac
    14221 aaaaacaaaa cctatgagta aaagtaaaat ttcatttttg ctaatgatag ctaaaaatcc
    14281 tatgaatcca cctaaagcta aactcccgct atcccccata aaaacctgcg caggataaca
    14341 gttgtaccat aaaaatccca ttaaagcacc gattaatgca gcacaaataa tcactacttc
    14401 accaagtcct tgaatttttg gcaaaagtaa atattcacta taatttaaat ttccgctcaa
    14461 atataagaat atccctaaag tagataaaga aaaaatactt ggaactgtag ctaagccatc
    14521 aagtccatcg gttaaattta cagcattaga gctagaaatt aaaaccaaaa tccaaaaaac
    14581 aatggcaaaa atttccatat caaaaagagg gtgtttgtaa aaaggtataa aaagttccgt
    14641 gctaagctct gaactaaaat ataaaggtaa gatgcaaata agtccagcga tgatttgtgc
    14701 taaaagcttc attcttggac taagtcctga atgattatct ttttttagaa ctttgcctaa
    14761 atcatctatg agtcctatta aacaaaaaag tatcaaacaa agtaaagcac ttatagcaaa
    14821 aatattatca aatttgatac aaaataaact tgcgattact gcagaactga tgaaaataag
    14881 cccacccatg gttggagtat ggcatttggt tttatgagtt tctggggcgt attcgtaaat
    14941 aggttgacta gcatttttag cttttgccca agtaataaat ttaggcatta aaaataaaga
    15001 taaacataaa gcgataaaaa atgcaaatcc tgcacgcaca ctaatataag taaaaaaagc
    15061 ataatgactt aaatctgaaa gataatacaa aacctagcct tctttttggt ttttaaaagt
    15121 ttaattttag taaaatctaa ccaaaaaaat tcttataaaa gagagaaaaa tgaagcaaaa
    15181 atgcgtttta attattacag atggaatagg gtataataag aatagtaagt ttaatgcttt
    15241 tgaagcagct aaaaaaccaa gttatgaaaa gctttttaag gaagtcccaa attctttact
    15301 aaaaacgagt ggtttagctg taggtttgcc agaagggcag atgggaaata gtgaagtagg
    15361 gcatatgtgt ataggaagtg ggcgtattat ttatcaaaat ttagtgcgta ttaataaagc
    15421 cattgaaaac aaagaacttg aaaaaaatga gaatttacaa aaacttttag caaaatgtaa
    15481 aagagtgcat attatagggc tttatagtga tggcggggtg cattctatgg atacgcattt
    15541 taaagccatg cttgaaattt gtgcgaaaaa tggcaatgaa gtttttgctc acgcaatcac
    15601 tgatgggcgt gatgtaagtc caaaaagtgg cttaaatttc ataaaagatt taaaagaatt
    15661 ttgtgaaaac ttaggcgtgc attttgctac gctttgtggg cgtttttatg ctatggatag
    15721 agataagcgt tgggataggg taaaagagta ttatgagtgc ttgttaggta aggcttataa
    15781 agtgccaaat ttattagaat acctacaaaa atcttacgat gaaaatgtta ctgatgagtt
    15841 tatcaaagca gctcaaaatg agaattacaa gggcatgaga gaagaagatg gcattatctt
    15901 tatcaatttt agaaatgata gaatgaaaca acttgttgaa gtgttaaatt ctaaggattt
    15961 taaagagttt gaacgcgaaa aaatctttga aaatttactt actatgagtg tttatgatga
    16021 taaatttaaa ctccctgtgc tttttgaaaa agaaaaaatt gaaaatactt tagcccaagt
    16081 gatttctaaa gcagggctta gtcagcttca taccgcagaa accgaaaaat atgcccatgt
    16141 aactttcttt tttaatggcg gaaaagaaga gcttttagaa aatgaaacaa gggttttaat
    16201 cccaagtccc aaggtaaaaa cttatgatga aaaaccccaa atgagtgctt ttgaagtgtg
    16261 tgatgcagtg aaaaaaggca tagaaaaggg tgaggatttt atagtggtaa attttgcaaa
    16321 tggagatatg gttgggcata caggtgattt taatgctgct ataaaggctg ttgaagcggt
    16381 ggatacttgt ttgggcgaga ttgtagaatg tgcaaaaaag catgattatg cttttatcat
    16441 tacaagcgat catggaaatt gcgaagctat gcaagatgaa aaaggaaatt tgcttaccaa
    16501 tcacactact tttgatgttt ttgtttttgt gcaagcaaag ggagtttcaa agattaaaga
    16561 taatatgggg cttagcaata tcgctgcaag tgtgcttaaa attttagact tagaaattcc
    16621 aaaagaaatg aatgaggctt tgttttagtt tgtttgcctt ttttataaga aatttgttaa
    16681 gattgcaatt tttaaaatta aacttattaa ggatagataa tgaaatttag cggaaaaaat
    16741 gttttaatta ccggagcaag taagggaata ggtgcttcta ttgcaaaaac tttggcgggt
    16801 tttggactta aagtttggat caattatcgt tcaaaacctg aacttgcaga tgctttaaaa
    16861 gatgaaatta ttgcaagtgg tggcgttgct gctgtgatta aatttgatgc aagcaaagaa
    16921 gatgagtttg aaaatggtgt aaaaaccata gtggagagcg atggagagtt aggttatctt
    16981 gtaaataacg caggcgttac aaatgataaa cttgctttaa gaatgaaatt agaggacttt
    17041 agcagtgttg tggatacaaa tttaagttca gcttttttag gttgtagaga agctttaaaa
    17101 accatgagta aaaaacgctt tggtgctgtt gtaaatatcg cttctattgt cggagaaatg
    17161 ggcaatgctg gacaagtaaa ttattctgcc agtaaaggtg gaatgatagc tatgactaaa
    17221 tcttttgcta aagaaggagc aagtagaaat ttacgcttta actgtgtaac tccaggtttc
    17281 ataaaaagcg atatgactga agttttaagt gatgaaatca aacaaaccta tcaagacaat
    17341 atccctttaa aacgctttgc agaacctgaa gaagtggcta attgtgtagc gtttttactt
    17401 agtgattatg cctcttatgt gacaggcgat gtgcttaaga tcaatggtgg tttatatatg
    17461 taaggaaaaa tgatggattt aaaagaaata gcacaatttt tagatgataa tgtaccagca
    17521 tttttagcca ctttaggaac ttgtggaaat cctagagtgc gtcctataca aagtccattg
    17581 cttgtgagag ataaaattta tttttgcaca gcaaatacaa aaggactttt taagcatata
    17641 aaaaattata atggtattga attttgttct tgtgcaaaag atgggacttt tttaagactt
    17701 agggctaatg cggtttttga accaaattta gaagttaaaa aaatgatgtt tgaaaaatat
    17761 ccttatcttg taaatcttta tgaaactccg caaaatccaa aatttgaagt tttttatctt
    17821 gatcatttaa gcgctagaat gcaatttatg aatggagaat ttaagctttt taaggcttaa
    17881 tgatttgata attttattaa ctatatatta attaagataa atattatctt aattaatatt
    17941 aactttttgt tattttttta aggtataatc attccgttta atttgcaagg aatagattat
    18001 gatatattgc aaaaattttt taatatttat tttattatat tcatctatct tctttgattg
    18061 cttatcttat gcttttttat atttattaaa ttataaattt gtttttaatc cattttatat
    18121 tgaaaggaga gtttgttttt ggatttttgg catgcggtta tgtaagattg acttacatta
    18181 aaaattatta ttaatttttt aaataaggag aatgatatgg gtgaattttc tagaagagat
    18241 tttataaaaa cagcctgtat tagtgtagga gctttagctg caagttcaag tggagtttat
    18301 gccttagatg attcatctaa gatggataaa gatacaaatt taccttcttg tgatgttttg
    18361 gtaattggat caggtggagc aggtttgcgt gctgcagccg cagtgagaaa agaaaatcca
    18421 aaattaagcg ttgtagtagc tacaaagatg atgccatcgc gtaacgcaac ttgtatggca
    18481 gagggtggaa ttaatggagt tactgatttt tctaatggag attcctataa attacatgct
    18541 tatgatacta tcaaaggcgg agcttatttg gtagatcaag acgcggcttt aaaattttgt
    18601 gaattagctg gaaaggctat ttttaatatg gattttatag gaaccttgtt ttcaagaaat
    18661 gagcaaggtg gagtagctca gcgtttaatg ggaggagctt ctaagaaacg ctgtaattat
    18721 tctgcagata aaacaggtca tattttaatg cattcttgtt tagatgatgc tattagtagt
    18781 ggtgtgaaat ttttaatgga tcatgaactt ttggatatag gtgttatgga tggaaaatgc
    18841 gagggtgtcg ttttaagaga tatacaaagc ggtggaattt atcctgtatt atgcaaagct
    18901 ttggtgattg ctacaggggg atacacaagg atattttata atagaacttc aactcctttt
    18961 attgccacag gagatggtgt ggcagctgct cttagagcag gacttggttt tgaagatcct
    19021 gagatgatac aatttcaccc aacaggagtt gcaaatggtg gaactcttat tacagaagcg
    19081 gcgcgcggtg aagggggata tcttttaaat aatcgtggtg agcgttttat gaaaaattac
    19141 catgaaaaaa tggagcttgc cccgcgagat gtagttgcgc gtgctataga aacagaaatt
    19201 cgcgaaggta gaggttatgg cgagggactt ggagcttatg ttttgtgcga tgtacgccac
    19261 ttaggaaaag aaaaaatttt aaaagattta ccaaaaattc gtcacactgc aatgcttttt
    19321 gaaaatattg atttagtgga tactcctgta cctatccgtc caacggcaca ttattctatg
    19381 ggtggaattg aagtggctaa atttgaagat atgagtacta aaattgctgg aatttatgta
    19441 ggtggagaag cttcttgtat ttctatacat ggagccaata gactaggggg aaattcttta
    19501 gccgatgcag ttgtaactgg gcatttagca ggcattggtg cgacaaatta tgccaaagat
    19561 gcaagttttg gaaaaggggc aaaaactcat gaacttgctc aaaaatggca ggctagattt
    19621 aaagaaatta caaataatgg cggaaatggt caagaaatgt atgaattgcg agaagagcta
    19681 ggaagtcaaa attgggataa tatggggatt tttagaactc aagaaaaact cgatcttcta
    19741 gcaaaaaatt tagaagatat acaagcaaga tatgaaaaaa ttcgtattcc aaatcctaat
    19801 gaagtgatga atactgcttt tacagattat gtagagcttg gtaatttgat tttactttct
    19861 cgctgtgctt gtttagcagc tagaaataga cttgaaagtc gtggggctca tactagagaa
    19921 gattatccaa agcgagatga taaaaatttc ttaaaacata gcattgtaaa tttagaaaat
    19981 gatgaattaa aacttagtta taaagatgtc gtggtaactg agttttcact tgatggaagg
    20041 agagtacaat gaaaatcatc atagatcgtt ttaatggcaa ggaaaaatat gaacaaagtt
    20101 atgatattga tgataaggat atacaaggaa aaactctgct ctctcttttg ctttttatta
    20161 aaaaaacaaa agatattact ttaaatttta ccgcctcttg tcaatctgcg atttgtgggg
    20221 cttgtgcagt tcgtgtgaat gggcattctt atcttgcttg tgatactaaa atgcaagatt
    20281 tgttaaaaga atatgataat ccttcaagta tacgcatttc tccgcttgga aattttagag
    20341 taatttctga tttaattgtg gattgggagc cttctataga aaatttaaga aaaattcgtc
    20401 ctgccatggt ggcaaaaaat gaattttcag cggaaaaggg ctgtaaacaa agtcaagaag
    20461 aatttgatcg tattagcaag caatgggatt gtattttatg tggtagctgt gcttcagagt
    20521 gtaataaatt agaagcagat agtagcgatt atatgcaacc ttttgttttt actcatgctt
    20581 ggcgtgcagc ggcagactct cgaggtaagg atcctatgtt gcatgtaaaa cccagcgtaa
    20641 tgaatggact ttggctttgt gttcattgtc aagagtgcgc tgatcgttgt ccaaagggta
    20701 taagttcagt aagtgatata gcaaatttaa gagtgatggc gattaaaaaa ggtttaaatg
    20761 aaggcttagg gcctgatcat gctgaagctt tttataaaga tttagttgaa ggttcaggac
    20821 gcttgaatga aatttatctt gctttgcgtt ctgagggtgt tataggttct atgggtaaaa
    20881 cagatatagc ttttaaactt atgcgtgcag gaaaaatgaa tcctatgcat gtttttggcg
    20941 aggatgaaat agaaggacat aaagatttgg ttaaaatgat aaaggcggca caagaagctg
    21001 ctgttaagga gtaaaatatg caaaaagaat acgctttttt tccaggttgt gttttatctc
    21061 aagctgcaaa agaatctaaa atttcacttg aagctattgc acctattttg ggttggaagt
    21121 tgaatgaaat taaggggtgg agttgttgtg gggcttctca agcgcagtgt gttgatccta
    21181 ttgcgacttt ggtagctaat gcaagaaata ttgctttagc agaagagatg aaaatgccaa
    21241 tgcttacaac ttgtagtact tgtatgctaa ctttaactaa agcaaaaaat actcttgata
    21301 agggtgcaaa agaacgcatc aatacttttt tagcacaagg tggaatgaaa tatcaaggtt
    21361 caacgcctat tacaagtctt ttgtgggagc tttatgagga tttggataat ttaaaaagca
    21421 aggtgaaaaa gccgctttca aatttaaaag tagctttatt ttatggttgc catagtttaa
    21481 gacctgaaga tgctttcggt aaaaaagaaa gttcaaccaa tccaaaaagt tttgaaagtg
    21541 tagtagaagt tttaggggct aaaatagttc cttttgaaaa acgccttgat tgttgtggtt
    21601 ttcatgcttc ttatcctgca gaaaaatctg tgaaaaaaat gtctagtcaa attgtcaata
    21661 atgcaagtga aaatcaagct gattgtgttg taacaccttg tccactttgt caaatgcagc
    21721 ttgatatcta tcaagaaaga tttcaagatt atactagttc taaagcaaga ttgccgatga
    21781 ttcatttatc acaattagta ggacttgcat taggactttc taaagaaatg gttggtttag
    21841 attataatat tattgatgca agtaaaattg cataaaaaca tgggcaaaaa gcccatgttt
    21901 aaagatttaa ttccattctt aaagaatgct cccaaaaagc cacttccaag cgtgttgcag
    21961 tatgaaaaat ttcgctgagt ttttggaatt tttgtgcact aacacttgaa gtataagaat
    22021 taacaaaatc ttcaaattct ttagcttcat tttgaaaatt ttcacttcca taggtcaaaa
    22081 tccattcctt gtaaggatga tcttttaaat tttcattttt taaacgattt ataatttcag
    22141 cacctatttt tgcatagcct atagcgcaag cactaagagc aactaacata tctaaaaaat
    22201 ctccattttc acctacgctt aacatataac gcgaataggc tatattgact aaactttcat
    22261 cttttatatt gagttcatct gcattaatgc caagagataa aattgcacga tgaagctcca
    22321 tttctccttc aactatataa ttttgaaatt tcatagcaaa acgaagttct tttgcggtat
    22381 t
//
LOCUS       DAEBKH010000009        22367 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.009, whole genome shotgun sequence.
ACCESSION   DAEBKH010000009 DAEBKH010000000
VERSION     DAEBKH010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22367
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.009"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..596)
                     /locus_tag="KIL20_000224"
     CDS             complement(<1..596)
                     /locus_tag="KIL20_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD2720289.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKINILMGANGSGKSTFL
                     RILKFLEGDFSKNISYFGNFKLNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIK
                     EDIEERIKESLMCLNLNESLLNKYPNELSSGQSQKIAFAIALSVRAKYYLLDEPSAFL
                     DKNTTLLFKKAILKMHENFNTGFLIASHDKHFLDSLAQ"
     gene            complement(598..1284)
                     /locus_tag="KIL20_000225"
     CDS             complement(598..1284)
                     /locus_tag="KIL20_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD2720290.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFDFKFKRFIKLIIDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            1363..2172
                     /locus_tag="KIL20_000226"
     CDS             1363..2172
                     /locus_tag="KIL20_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HBD2720291.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGNPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            2314..3081
                     /locus_tag="KIL20_000227"
     CDS             2314..3081
                     /locus_tag="KIL20_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HBD2720292.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDKTLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNIKALEFVKKIKENLEKEQIQICALENFI"
     gene            3091..3831
                     /gene="pxpB"
                     /locus_tag="KIL20_000228"
     CDS             3091..3831
                     /gene="pxpB"
                     /locus_tag="KIL20_000228"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HBD2720293.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSAYASLLIYFNPCILSLNSLLDFLEKIKKDIKLAEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFDIQEQVAKKVYQKEIYEYKNH"
     gene            3812..4777
                     /locus_tag="KIL20_000229"
     CDS             3812..4777
                     /locus_tag="KIL20_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HBD2720294.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGVELCLKGGKYEFLDGNYFVLSGAEFEAKLNNQKIKTYKVYKANKGDILE
                     LGLAKIGFRGYLCVAGGFEIKSFLNSKSSDAKMGVGFFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSHKEPIIRVILGTNEDAFTQKGIDTFLNTSYKVGSKSDRMAIYAE
                     SSKSIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIGTVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(4774..5670)
                     /locus_tag="KIL20_000230"
     CDS             complement(4774..5670)
                     /locus_tag="KIL20_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HBD2720295.1"
                     /translation="MTRTKYLYILLVLAMFLWGSSWPTSKILSAYADTSVITFWRFFF
                     VLLGSLMVLGFLRIPLSLEKSILKWVLIAGILNGLYTFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAILFQKDKKSTHKIIKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALIAVFNHKAKGVHPLAINFYINLISVLMFSWVLFDVKSYEIFHFEFK
                     FWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(5703..6281)
                     /locus_tag="KIL20_000231"
     CDS             complement(5703..6281)
                     /locus_tag="KIL20_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HBD2720296.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQRYDPKEEIQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            6381..6722
                     /locus_tag="KIL20_000232"
     CDS             6381..6722
                     /locus_tag="KIL20_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002921808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HBD2720297.1"
                     /translation="MTKENSQCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMCK
                     WGEKDKKEKNA"
     gene            6715..7164
                     /locus_tag="KIL20_000233"
     CDS             6715..7164
                     /locus_tag="KIL20_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HBD2720298.1"
                     /translation="MLELIGELSLQNYMGEWLEMARKPAFFQKSCLNSKAKYELKYKN
                     GVPYVEIENFCSKENEISSIKGKAKIVSNRQLAVRFNIFMNLFNKVNYEIIFIDSEYK
                     VAIVGSPDKKYLWILARNIIDEKSIKELLDIAKQRGFSVSDVIFDKY"
     gene            complement(7166..8242)
                     /locus_tag="KIL20_000234"
     CDS             complement(7166..8242)
                     /locus_tag="KIL20_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HBD2720299.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAICVPKNA
                     PMHKVAPLLCAGITTYSPLKFSKIKEGSSVAIAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSTDKNAVKERFDLIISTIPTPYNPAIYLDLLKFGGEMAIV
                     GLPPVEDKVNIGINELVHKAGKKVYGSLIGGIAETQEMLDFSLKHEIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            8373..10682
                     /locus_tag="KIL20_000235"
     CDS             8373..10682
                     /locus_tag="KIL20_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HBD2720300.1"
                     /translation="MQNLYSEDDTRVKFIDAKLYDSSWNEENIKRNYYFTDGRKLLGG
                     KRAQRKFADYLLRYEGNNLAIIEAKKFSKDPLDGLSQGIEYAKILNVPFVYSSNGEKI
                     YEYDIRSHSGKYIDKFPSPKELFDRIYGNVKEWQYRLLTQNVMYIPQKELRYYQKIAI
                     DKVIEAIINNKNRILLTLATGTGKTTIAFNLCYRLLEARWNKENKDQKPKILFLCDRV
                     SLRDQALGEFNPIESDCKAISAEEIKKNDGKIITNANVFFGIYQSLAANSKEQENTQE
                     EQESKFYLQYPKDFFDLIIIDECHRGGANEEGSWRAVLEYFSYATQLGLTATPKKEEN
                     IDTYEYFGESVYDYSLKSGIEDGFLTPYKVKLIKTTLSDGYTYNPDDLIQGELEKGFY
                     KQSEFERNIFLPNYNDFIAKKILELINPMDKTIIFCANQAHANEVKRAIDKYKSVKRD
                     DYCVRVTSDEGKIGLDYLKQFQDNDKSFPVILTSSKMLTTGVDAKNVRNIVLLANIGS
                     MVEFKQIIGRGTRVYEGKDFFTILDFVGATKLFYDPKWDGEKIKELKEQNKQEKITKE
                     QIKQTKEESKEKKSVTIHLKGTKLKVLDITTSYVGAQGKPLSTKEFLEFLIGKLGEYY
                     DDEAKLREIWSDQKNRERFLKALANDGVDEDALKDLRKIFQKDCDIYDVLAHLSFNAE
                     IKTRQERVLQVENGEFLKRFQKEKAIKFIEFLLNRYQEYGIKDFDDGLKPLIELSSLG
                     NVKELADEFGGLEILKQSFDDLQREIYAR"
     gene            10772..12094
                     /locus_tag="KIL20_000236"
     CDS             10772..12094
                     /locus_tag="KIL20_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD2720301.1"
                     /translation="MLIEFRVENFLSIQDEQILSMMASKDNTFFDSHTNGDKKLALLK
                     SSVIYGANASGKSNIVKALQTMKTIVISSANTQRGDKLPITPFLLGDEDDKPTKFEII
                     FIQNDTKYQYGFILNSEKILEEWLLTFDENNTEQNWFERIYNKKEGRYNYSFGDQFLA
                     DEIYKQLWENSTRDNALFLSVAIQLNNEQLKPVFDFFNLKLQIANSNGWGNGKSITIN
                     EYKKDKELVNSFFKIADLDIEGVEIKTSDIDENSLPSNLQNIPQELKEKIIQEVKNIQ
                     NLKNVKILEDISFIHLSQKNQIKFLNFNDESDGTRKFFNIAGIWIDSLKKGNILIIDE
                     LNTHLHPLMTKFLVNLFHNEDLNKSNAQLIFTTHDTSILNQDIFRRDQIWFCEKQNKA
                     TKLYPLSDFEESEERRDKTNLENDYLLGRFGALPYFKEILSSWSDNGN"
     gene            12084..12716
                     /locus_tag="KIL20_000237"
     CDS             12084..12716
                     /locus_tag="KIL20_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RloB domain-containing protein"
                     /protein_id="HBD2720302.1"
                     /translation="MGTDDLRKKRNTKTRDREAKRKKNEIILIVCEGEKTEKNYLNQL
                     KDFFRLSNVSINIISSKKPNPSQIVEFTKEKNKDYSYNKVYCVFDKDTHSDFDKARQE
                     CEKYKFEAITSNPCFEFWILLHFTYTTKSFSTNSPCNELIESDLKKHIKDYKKDYNFT
                     SIIKQNLSTAIANAQKANKEAEKNNYTSSYTFMDKLALKFQELNSARINQ"
     gene            12713..13924
                     /locus_tag="KIL20_000238"
     CDS             12713..13924
                     /locus_tag="KIL20_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HBD2720303.1"
                     /translation="MTNLPQGWEVKTLSEIGEIVTGSTPSKSNLDFYGKDYPFFKPSD
                     FEQGYFLENAGDNLSKLGFGKARQLPPKTILVVCIGSLGKVALTKVIGSCNQQINAII
                     PHKNIISEYIYYYCISSKFQSILFSKAPQTTLAILNKTEFSKLEIIYPKDIKEQERIV
                     GILDFAFSKIDENIKKAKENLANIDELMQSALQKAFNPLNDNTKENYQLPQSWEWKSL
                     GDTSNYGKTSQVKPSQLKGNDWILELEDIEKESGVLLQKVLFQDRQSKSNKIKFNKGD
                     ILFGTLRPYLKKVIIADDNGACSSEIMPFSTGNSITNHFIYYYLFANFLHDRISSLTY
                     GARMPRLGTKDGKSLQIPLPPLQEQEQIAEHLDFVFEKAKALKELYTKELKDYEELKQ
                     SLLDKAFKGEL"
     gene            14069..15553
                     /locus_tag="KIL20_000239"
     CDS             14069..15553
                     /locus_tag="KIL20_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HBD2720304.1"
                     /translation="MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNL
                     KDLAFLDGKDYKSILEEKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKN
                     FKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISFNKEDEVFALGEVYEK
                     LLKDMGSDGGNSGEFYTPRPLIKTMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYK
                     DRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK
                     KITDITEKDKYEVILANPPFGGKEKEQIQENFPIKSNATELLFLQHILKSLKNNGRCA
                     IIVPEGVLFQNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKC
                     ICEGDGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY
                     DLSAKNPNVKEEKILRTSEEILNSLEENLKTQQEYLNELKSILK"
     gene            complement(15631..16386)
                     /locus_tag="KIL20_000240"
     CDS             complement(15631..16386)
                     /locus_tag="KIL20_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HBD2720305.1"
                     /translation="MQLRQKAREIFEKFFGKVEEKLLFTSDKEFFTNHINFTFGESFV
                     KANLDTQKYFLITLASTLAVGGKIEFKALLQGAIKNDISPIVIKEVIYQATPYVGFAR
                     VCDFLSLCNKVFKKLNIALVLTPQGTTTQENRKIKGREIQNAIFSEANITKMIETTPE
                     DKAFINDFLSANCFGDYYTRMGLDLKTRELLTLVYLISLGGLENQVKAHIQGNLNMEQ
                     SRKDLLNIIAALIPYIGYPKALNALNLLDDIKK"
     gene            complement(16494..16913)
                     /locus_tag="KIL20_000241"
     CDS             complement(16494..16913)
                     /locus_tag="KIL20_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HBD2720306.1"
                     /translation="MQELEKAGIHGSFKGDSKFFSKNVKVSMMFKSNEWRNFSGALVE
                     FEASARSAWHTHPQGQTLIVTEGEIITKVPGQKAFIAKKGDVISCPIGVKHFHGATNT
                     SSGTHIALTGEKEGKNVEWLELVSDEEYENALKEARE"
     gene            complement(16971..18161)
                     /locus_tag="KIL20_000242"
     CDS             complement(16971..18161)
                     /locus_tag="KIL20_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD2720307.1"
                     /translation="MQALNQEKFNSLSDIKIILVLCLGVFGILSTELGMMGIIPIVSQ
                     NFSVSISDAGWSVSIFALVITFCAPIVPLLCANFNPKKLMLICLAVFILSSLTSAFVS
                     EFWQLLILRAIPAFFHPIYIALALSMVANLVEDKKEIPKATAKIFAAVSAGMVLGVPM
                     TSYFGGNFSFKMAMLFFVFLNTLSFIATLFFVPDFKKVNSVKISKQLLILRYPLLWIS
                     ILCVICINAGIWGFYSYFSDFLHSVGKMNFTLISIVLAIYGFSNIIGNYIAGKTLVKN
                     ANFTLILTPLIMIGFYILLFSFYSEIILIIFAFILGILAGVMNNGTHFMISYPFPKAA
                     NFSNGLFISVANIGLSTGTAICGLVISLSDTRYIIVNTIVLLILGIIMIFVRSRIEKM
                     KLRF"
     gene            18310..19215
                     /locus_tag="KIL20_000243"
     CDS             18310..19215
                     /locus_tag="KIL20_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HBD2720308.1"
                     /translation="MQVFFSTFKEFLYLFVELSVLFIGINILVAFLNAKYSNFFEKHL
                     KQDNFQTRLKAIFFGSLTPFCSCSSIPLLNAFLKAKVPLSVCMAYLITSPLINPIIIV
                     VFIVSFGIKISFIYIGFLYAIILFISFLLSKFDTSKFLNNDFLENEFNEKSSCCSTKK
                     CCSSKTHINLKQICIDSLKEYKKILPYALAGTFIGALIHGVFPSNFFEIYLKDYGILG
                     VFIAAFIGVLLYMNCTAMIPVALVLTQTGIPLGIMMSFLIAGSGCSLPELILLKRNFK
                     TSFLILFALLIILIAILFGILMFFI"
     gene            19225..19542
                     /locus_tag="KIL20_000244"
     CDS             19225..19542
                     /locus_tag="KIL20_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HBD2720309.1"
                     /translation="MQKFLTIISAINDESRVLILHHLLRYKELCVCDLQELLNMGQSR
                     LSRHLKILKDAGFLYVKRKGTWAYYGINNELLKLHSDLFENIKNLDIDNIVLEQNTCE
                     NDK"
     gene            19539..19961
                     /locus_tag="KIL20_000245"
     CDS             19539..19961
                     /locus_tag="KIL20_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphatase family protein"
                     /protein_id="HBD2720310.1"
                     /translation="MKLAFICIHNSCRSQMAEALARHKAEKMGIDIEVFSAGSDTSKG
                     VNSQAIRLMREIYQIDMKKHYSKLIDSLPQNLDIVVSMGCGVACPSLKSRYYFDFGLK
                     DPSGSYDDEFRKIIQILDYKITALLQAIKTNSLKDFTC"
     gene            19955..20998
                     /gene="acr3"
                     /locus_tag="KIL20_000246"
     CDS             19955..20998
                     /gene="acr3"
                     /locus_tag="KIL20_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite efflux transporter Acr3"
                     /protein_id="HBD2720311.1"
                     /translation="MLGFIDRFLTLWIFLAIFLGLILGIIFPNIALFWNLFEYKSVNV
                     VLTLCLILMMYPPLAKVDYAKLSKVFDSKKVILLSMILNWFIGPLLMFILAFIFLKDE
                     PLYMQGVIIIGLARCIAMVVVWSDLAKGDREYTSALVAMNSIFQILFFSTLAYIYLDF
                     LPKLLGQSTLATSLDIDFSALSKNVLIYLGIPFLMGFITRTLLLKYKSKRWYENTFLP
                     KISPITLITLLATIIIMCSYKANEVFHLPLEALKIAFVLTLYFIFMFFLTWFISKKNH
                     LSYPKTCSLCFSASGNNFELAIIICIATFGLHSEQAFASIIGPLVEVPVLILLVKWAL
                     GKSLNSKKMNQAS"
     gene            complement(20993..21421)
                     /locus_tag="KIL20_000247"
     CDS             complement(20993..21421)
                     /locus_tag="KIL20_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HBD2720312.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWAKWIEWLRISGMPIEQVKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKFCKES"
     gene            21500..>22367
                     /locus_tag="KIL20_000248"
     CDS             21500..>22367
                     /locus_tag="KIL20_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HBD2720313.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLHESALKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDITNLPYQSLITEENIINNVG
                     PILKYYRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTNLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKTHGDYNFFTYGLDGKERLGTCTKVFAYTACI
                     TESADIINKPIHK"
BASE COUNT         8317 a         3201 c         3482 g         7367 t
ORIGIN      
        1 ttttgagcca aagaatctaa aaaatgttta tcatgacttg cgattaaaaa acctgtattg
       61 aaattttcgt gcattttaag aatagctttt ttaaataaaa gtgtagtatt tttatccaaa
      121 aaagcactcg gttcatcaag taaataatac ttcgctctta cgcttaaagc tatagcaaaa
      181 gctatttttt gactttgtcc tgatgaaagt tcattaggat atttatttaa aagactttca
      241 tttaaattta aacacatcaa actttctttt atgcgctctt caatatcttc tttaatccca
      301 taagttttta aggtaaataa aaaatttgcc cttacgctac gatttaacaa aataggctct
      361 ggaaaaagca aataaatttc acgcttttgt ttattattaa gtttaaaatt tccaaaataa
      421 gaaatatttt ttgaaaaatc tccttctaaa aattttaata ttcttaaaaa tgtagatttt
      481 ccacttccat tcgctcccat taagatgtta attttactcg tatcaagttt taaatttttg
      541 atttttaaaa cttctttgtt ttgatagttg aaaaaaagat tagaaatttc tatcatttta
      601 tgttcttttg agtttgtgtg tgatgaaatt taaacaaaag gcaatgagaa ttaaaaccaa
      661 agccaaagct ataccgctag caaattcgcc tttgttggtt tcaagtgaaa tagctgtggt
      721 tatggttcta gtgtcgtatt tgatatttcc acctactatc atcgctactc ctacttctgc
      781 tacaatgcgt ccataagcta gtgcaacgac gctaatcaaa gcaaagcgta attcataaat
      841 catggttaaa acaagtttta aaggacttag atgaaaagat tttataagta aaaaatgttt
      901 tttattcata ttttctatca aatttgaaaa aagcgcaatc actataggaa gcgctaaaat
      961 aaactgccct aaaattaaag cctttatagt aaaaagtagt ccaaattccc ctaaaggtcc
     1021 tcgacttgaa atcaatgcat aaagtataag ccctactgca actgttggaa aagagaggct
     1081 agtatctatg ataagtttta taaagcgttt gaatttaaaa tcaaaaaagc ctaagataaa
     1141 tcccaaagga aaacctataa gcaaagccaa aactatagaa atacttgagc ttaaaagtgt
     1201 agtttttata gccgaaatta cgctttcatc ggcattgaaa agtaaaaata aagcttgttt
     1261 aaaaccatca aaaatataat ccaaaaatat cctttttaaa ataagtaatt ttagcataat
     1321 tatgctaaaa tattttttta tgtaaattta taaggagaaa aaatgaaaaa aatcatttct
     1381 ttagcccttg ctttagcttt aagtgcaagt gcagcagaac ttaaaatggc aaccacaaca
     1441 agcactgaca atacaggact tttagatgcc ctaaagcctc tttatgaaaa agaaagtggc
     1501 aataccttaa aatgggttgc ggtaggaaca ggtgcagctt taaaaatggg tgaagattgc
     1561 aatgctgatg tgctttttgt gcattctcca aaggctgaaa aagaatttat gaaaaaaggt
     1621 tttggtgtag atagaactcc tgtgatgtat aatgatttta tcatcatcgc agataaatct
     1681 ttagcttcta aatttaaagg taaaaattta aaagaaagct tagaacttat caaaaatgaa
     1741 aaactcactt tcatctcaag aggtgataaa tcaggcactg ataataaaga aaaaagtctt
     1801 tggaaaaatc ttggcggtgt tcctgaaaaa caaagctggt atcaacaaag cggacaaggc
     1861 atgttagcaa gcattaaaat cgctgaagaa aaaaaaggtg tgattttaac cgatcgtggt
     1921 acctatatca aatatgaagc caatgaaaaa ggaaatccaa acttagtcat tgtaaatgaa
     1981 ggcgatgata gtcttaaaaa tttctattct gttatagcaa caaatcctaa gcattgtaaa
     2041 aatgtaaatt atacagaagc tagcaaattt attaaatggg taacaagtga taagacttta
     2101 aattttattg ctgattttaa acttcttaat aaacctttat ttgtgattga tgcaaaaacg
     2161 agaaaagact aaaaattaag caggttttaa cctgcttaaa atatcatttt ttacttattg
     2221 taactttttt atttattttt caaaactttt agcttattta aaattcttct ttagatataa
     2281 taaaatcaat aattaaatat acaaggtcaa ataatgttca aagtggattt aaatagtgat
     2341 ttaggggaaa gttttggcgc ctataaaatg ggaatggatg aagaaatttt aaaatttgta
     2401 agctcagtaa atgtcgcttg tggctttcat gcgggtgatc cttgtgtcat ggataaaacc
     2461 ttaaatttag ccaagcaaaa tggtgtttgc ataggagcac acccatctta tcctgatctt
     2521 ttgggttttg gaagacgcaa tatgcaaata agctttgaag aggctaaaaa ctatgccttg
     2581 tatcaactag gagctttatt tggctttgcc aaggcaaaag gtatgaaaat acagcatttt
     2641 aaagcccatg gtgcacttta taatatggca gctattgatg aaaatttagc cttagcactt
     2701 tgtgaggcag tggcgagttt tgatgaaaat attatttttc tagggcttag taattctgct
     2761 atgaatgaag cggctaagaa aaaaggttta agatatgcta atgaagtttt tgcagatcgt
     2821 gcttataatg atgatggcac tttagtttca agaaaattag aaggggcatt aatacacgat
     2881 gaaaatttag ctatcaaacg cgtgataaaa atgataaaag aaagcaaagt tacaagcata
     2941 aatggcaaag aaattgattt gaaagccgat agtatttgtg ttcatgggga taatataaaa
     3001 gctttagaat ttgttaaaaa aatcaaagaa aatttagaaa aagaacaaat tcaaatttgt
     3061 gctttggaaa attttatata ggttttagca atgtttagtg tgcattttag cggaagcaag
     3121 gctttgcttt tacgttttga gcaagaaatt tcacctcaaa tcaatgctta tgttttaagt
     3181 acagaacaaa ggatacaaaa agccctaaaa gaaggtgaaa tttatggtat tgatgagtta
     3241 gtaagtgctt atgcaagctt gcttatatat tttaatcctt gtatactttc tttaaattcc
     3301 ttgcttgatt ttttggaaaa aattaaaaag gatattaaac ttgcagaaca aaactcaagt
     3361 ctttgtatag aagttccact ttgttatgat gaagaatttg gactggattt agaatttgtg
     3421 tgcaaacaca atcaaatttc aaaagaagag cttatatctc ttcacactaa gccttattat
     3481 cttgttttta tgctaggttt tatggcaggt tttccttatc ttggaggttt agatgaaagg
     3541 ctttttaccc cacgcctttc aagccctaga gcaaaaatag aagctggaag tgtaggcata
     3601 gccgataaac aaacaggagt ttatcctata tcaagcccag ggggttggca aatcattgct
     3661 agaacacctt tggaattttt tgataaagaa gatgaaaaaa atcctactct tttaaaagcg
     3721 ggtatgtttt taaaatttaa agctatttca aaagatgaat ttttcgatat ccaagagcaa
     3781 gttgctaaaa aagtctatca aaaggaaatt tatgagtata aaaatcattg aagcatctat
     3841 aaattcaagt ttgcaagact ttggtagaaa aaaatttgct aaatttggca tagcaagaag
     3901 tggggctatg gatgaagatg ctttaagaat ggcaaatatc ttacttggaa acaaacaaga
     3961 tgaagcagga gttgaacttt gtttaaaagg tggaaaatac gaatttttag atgggaatta
     4021 ttttgtttta agtggggctg aatttgaggc aaagcttaat aatcaaaaaa tcaaaactta
     4081 caaggtgtat aaagcaaata aaggcgatat tttagagctt ggtttagcaa aaataggttt
     4141 tcgtggatat ttatgcgtag caggtggctt tgaaataaaa agctttttaa actctaaatc
     4201 cagcgatgct aaaatgggag ttggattttt tgaaggaaga gctttgcaaa aagatgatat
     4261 tttaaatact cataatactt ttataccttt taatttagaa gctagagaat gtgaaaatcc
     4321 tctttttaaa agccataaag agcctattat acgcgttatt ttaggaacaa atgaagatgc
     4381 ttttactcaa aaaggcatag atactttttt aaatactagc tataaagtag gttcaaaaag
     4441 cgatagaatg gcaatttatg cagaatctag caaaagtata gagcataaaa actcagcaga
     4501 tatcatctca gatcctgcag tttttggaag catacaagtg ccaaaaagtg gtattcctat
     4561 cattttaatg gcaggaagac aaagcacagg aggttataca aaaataggca cggttataga
     4621 aaatgatcta agcttactcg cacaagctaa gttaggttct agctttaaat ttcaaagcat
     4681 tagcatgcaa gaagccttag agctttataa acaaagagaa atgaaattta aagccatgga
     4741 tcaaaaaatc aatcttgatt ttgaaaattt aatctaagct tttttaccat aaatattgat
     4801 aaaatatata gcacctatag ccaaggcaca acctaacaag gtaagtgcat ttggcacctc
     4861 atctagtata aaataactac aaattaaagc actagcagga gtgattaaaa caaaagaatt
     4921 tgccttaacg ctccctaaaa tgtgaatccc ataataataa atactagtac ctataatagt
     4981 tgataaaaaa gcaacgacaa acatactgat ccaaaattta aattcaaaat gaaaaatttc
     5041 ataacttttt acatcaaaca atacccaaga aaacattaaa acagaaatga gattaatata
     5101 aaagttaatc gccaaagggt gaactccttt ggctttatga ttaaacactg ctatcaaagc
     5161 ccaaataaaa gaacaagtta aaaataaaat attaaatttg ccaaataaat cttctaaact
     5221 ccctaaattt aacaaacaaa atccagataa taaacctaaa aataagccta gaatttcact
     5281 ctttatgatc ttgtgagttg attttttatc tttttgaaat aatatcgcta tcataaatat
     5341 caaataagaa aaaataggaa tcatagttgt aaccaaaaca ccgccttttc cagctaaacc
     5401 atgcttaatg gcaataaaaa atacaaaagt ataaagccca tttaaaattc ctgctatcag
     5461 cacccatttt aaaatggatt tttcaaggct taaaggaatt cttaaaaagc ccaataccat
     5521 caaagaacct agcaaaacaa agaaaaaacg ccaaaaagta atcacagaag tatcagcata
     5581 agctgataaa atcttagaag taggccaaga tgagccccat aaaaacatag ctaaaacaag
     5641 caagatatac aaatactttg ttcgagtcaa tgttacacct tgaaattttt aagtcaaatt
     5701 ttttaaaaaa tttttttcaa gtgtagttca tactcgttta gatatttttc cacttgagga
     5761 ttttttacca catcattaca cataaaagtt ggtaaagctt tcatacctat aaattcatga
     5821 gccttatgca aatgccaata caccatatcc acaccctttc cttcaaaaaa ttcattttta
     5881 tcattaaagg cttcaagagg tgcattccaa gtgagagaaa acatgtattt tttaccatga
     5941 tctaaaccac cttttccata gtttttacta ggattttcat gagttcttcc atcattttta
     6001 aaaagcactc cagcacccaa accaaacact tcatcgatat attttttaac tatccaaggc
     6061 tcgcccatcc accaagctgg catttgatag atcacagcat cagcttttat aaatttttgt
     6121 atctcttctt taggatcata tctttgatct atatgagttt gatctacttc gtatcctaat
     6181 gtttttaaaa tttctaaagc atgattatgc aatgttaaat taagctgtcc ttttgaattt
     6241 ccaaattctt tagcgccatt aagcaagagt atatttttca tttttatcct tttttaaatt
     6301 ttatgataca attataactt agcataatat cattttcaat acagaaaata aagtaagata
     6361 ctatactaaa ggaatgttaa atgactaaag agaattctca gtgcaatttc gaagaatgcg
     6421 gatttaacta tactctagca ttaattaatg gaaaatataa aatgagtatt ttatactgct
     6481 tatttcgcta tgaaatcgtg cgttataatg aactcaaacg ctttttaagc tccatatctt
     6541 ttaaaacttt aaccaatacc ttaagagaac tagaaaatga tggtttaatt atcagaaaag
     6601 aatacgctca aattccaccc aaggtagaat atagcttatc caaacgcgga caaagtttaa
     6661 ttcctatttt acaagctatg tgcaaatggg gcgagaaaga caaaaaggaa aaaaatgctt
     6721 gaattaattg gcgaactttc tttgcaaaat tatatgggag aatggcttga aatggctaga
     6781 aaacctgctt tttttcaaaa atcttgccta aattcaaagg caaaatacga gcttaaatat
     6841 aaaaatggcg ttccttatgt agaaattgag aatttttgca gtaaagaaaa tgaaatttca
     6901 agcataaaag gcaaggcaaa aatcgtttca aataggcaat tagcagtgag atttaatatc
     6961 tttatgaacc tttttaataa ggtgaattat gaaatcattt ttattgatag cgagtataaa
     7021 gttgccattg tgggtagtcc tgataaaaaa tatctttgga ttttagcaag aaatataatt
     7081 gatgaaaaaa gcataaaaga gcttttagac atcgctaagc aaaggggatt tagcgttagc
     7141 gatgtgattt ttgataagta ttaaattatt cttttgtcat atcaataaca tagcgaaatt
     7201 tagcctttcc tgaggttaga ttttcataag ctttatcgat ttcttgtggt gtgataagct
     7261 cggtttctgg ataaatttcg tgttttaaag aaaaatcaag catttcttga gtttcagcaa
     7321 taccgccaat tagcgagcca taaacctttt tacctgcctt atgtacaagc tcgtttatgc
     7381 ctatatttac cttatcttcc acaggtggta agccaactat agccatttcg ccaccaaatt
     7441 taagtaaatc caaataaatt gcaggattat aaggcgttgg aatggttgag atgattaaat
     7501 caaagcgttc ttttacggcg tttttatcag tgcttgtgta aaatgagctt acacccatag
     7561 ctaaagcatc ggcttttttg ttttcatttc tagcaaaaac gctaaccttt gcacccattt
     7621 taacagcgta ttttacagcc atcataccaa gtccgccaaa gcctgctata gcaacgcttg
     7681 agccttcttt tatcttagaa aattttaaag gcgagtaagt ggtaatgccc gcacaaagca
     7741 aaggcgcaac cttatgcatt ggtgcatttt ttggcacaca aatggcaaat ttttcactta
     7801 caactatgtt gtttgagtag cccccataag tgttttcatt gccgtgaaat acatcgcaac
     7861 tattgtaagt aaagatggtt ttgccatttt cgcaaaactg ctcttgtgag cgtttgcaag
     7921 catcgcactc accgcatgaa tttaccatac aaccaacccc tgcgtaatct cctactttaa
     7981 atttgctcac atttttaccc acagcgataa cttctcctgc tatctcatgc ccaggtacgc
     8041 aaggataagt agcttctccc cactcgcttc ttgcggtgtg aatatcgcta tgacaaatac
     8101 ctgcatatag gattttaatc aaaatatcat tatcaccaat agcgtggcgg ctaaattcaa
     8161 agggtgtgaa tttcgcatct ttactaagca ttgcatagcc tttacttgcg atgcgattgt
     8221 tttctaaaat tttgtattgc attttcgctc cttttttgat tttttataat tataaaacat
     8281 tagagtagct ataagtcaag agtgaaaata atttttttaa aaactagtat aaatgctata
     8341 attataaaat ttaatttcac tttggggtaa aaatgcaaaa tttgtattca gaagatgata
     8401 ctagagtaaa atttatagat gcaaagcttt atgatagttc ttggaatgaa gaaaatataa
     8461 aaagaaatta ttattttaca gatggtagaa agcttttagg tggtaaaaga gcacaaagaa
     8521 aatttgcaga ttatttgctt agatatgaag gaaacaacct tgctataata gaagctaaaa
     8581 aatttagcaa agatccttta gatggtttat ctcaaggcat agaatatgca aaaattttaa
     8641 atgtgccttt tgtatatagt agcaatggag aaaaaattta tgaatacgat ataagaagtc
     8701 atagtggtaa atatatagat aaattcccaa gtcctaaaga gctttttgat aggatttatg
     8761 gcaatgtcaa agaatggcaa tacaggcttt taacccaaaa tgttatgtat attccgcaaa
     8821 aagaattaag gtattatcaa aaaatagcca tagacaaagt catagaagct attataaata
     8881 acaaaaatag aattttactc actcttgcta caggcacagg aaaaacaacc atagctttta
     8941 atttgtgtta tcgtttgtta gaggcaagat ggaataaaga aaacaaagat caaaagccta
     9001 aaatactatt tttatgtgat agagtgagct taagagatca agccttagga gaatttaatc
     9061 ctatagaaag tgattgtaag gcaattagtg ctgaagaaat aaagaaaaat gatggaaaaa
     9121 tcataacaaa tgcaaatgtt ttctttggaa tttatcaaag cttagccgca aattcaaaag
     9181 aacaagaaaa cacccaagaa gaacaagaga gcaaatttta tcttcaatac ccaaaagatt
     9241 tttttgatct tatcatcata gatgagtgcc acagaggtgg agcaaacgaa gaaggaagct
     9301 ggagagctgt gcttgagtat ttttcctatg caactcagct tggtttaacc gctactccaa
     9361 aaaaagaaga aaatatagac acttatgagt attttggtga gagtgtttat gattatagtc
     9421 ttaaaagtgg tattgaagat ggatttttaa ccccttataa agtcaaactc ataaaaacaa
     9481 ctttgagtga tggttatacc tataatcctg atgatttgat acaaggtgag cttgaaaaag
     9541 gcttttataa acaaagtgag tttgaaagaa atatcttttt accaaactat aatgacttta
     9601 tcgctaagaa aattttagag cttataaatc ccatggataa aactataatt ttttgtgcaa
     9661 atcaagctca tgcaaacgag gtaaaaagag ccatagataa atataaaagt gttaaaagag
     9721 atgattattg tgtaagagtt acgagtgatg aaggtaaaat agggcttgat tatctaaagc
     9781 agtttcaaga caatgataaa agctttcctg tcatacttac aagttctaaa atgcttacaa
     9841 cgggcgtgga tgctaagaat gtccgcaata tcgttttact agcaaatata ggctctatgg
     9901 tggaatttaa gcaaatcatc ggacgtggaa ctagagtata tgaaggtaaa gactttttta
     9961 ccatacttga ttttgttggc gctactaagc ttttttatga tccaaaatgg gatggtgaaa
    10021 aaataaaaga actaaaagag caaaacaaac aagaaaaaat tactaaagag caaataaaac
    10081 aaacaaaaga agaaagcaaa gaaaaaaaga gcgtcactat acacttaaaa ggcacaaagc
    10141 ttaaggtttt agatataact acaagctatg taggagcaca aggtaagcca cttagcacta
    10201 aagaattttt agaatttttg ataggaaagc ttggtgagta ttatgatgat gaagcaaaat
    10261 tgcgtgaaat ttggagtgat caaaaaaata gagaaagatt tttaaaagcc cttgcaaatg
    10321 atggagtaga tgaagatgct ttaaaagatc taagaaaaat ttttcaaaaa gattgtgata
    10381 tatacgatgt tttagcgcat ttaagcttta atgccgagat aaaaacaagg caagagcgtg
    10441 ttttacaagt agaaaatggt gagtttttaa aacgctttca aaaagaaaag gctataaaat
    10501 ttatagaatt tttactaaat agatatcaag aatacggcat aaaagatttt gatgatggct
    10561 taaaaccgct tatagagctt agttctttag gcaatgtaaa agaattggcc gatgaatttg
    10621 gtggcttaga aattctaaaa caaagttttg atgatttaca aagggagatt tatgcgaggt
    10681 gatatgttta aagataaatt tgagattttt agttaaaata atctctaaaa aataattatc
    10741 tatatatttt aagaaaaaag taggaaaaaa tatgcttata gaatttagag tagaaaattt
    10801 tttatccatt caagatgagc aaattttaag tatgatggca agcaaggata atactttttt
    10861 tgattctcat accaatggcg ataaaaaatt agctttgcta aaaagtagtg tgatttatgg
    10921 ggcaaatgct tctggaaaat cgaatattgt aaaagctttg caaactatga aaaccatcgt
    10981 tatatcaagc gcaaatacgc aaaggggaga taagttacct ataacacctt tcttgctagg
    11041 ggatgaagat gataaaccta caaaatttga aattattttt atacaaaatg acacaaagta
    11101 tcaatatggc tttattttaa attctgaaaa aattttagaa gaatggcttt taacttttga
    11161 tgaaaataat accgagcaaa attggtttga aagaatttat aataaaaaag aaggaagata
    11221 taattattct tttggggatc aatttttagc tgatgaaatt tataaacaac tatgggaaaa
    11281 tagcactaga gataatgcct tgtttttatc tgtggctatt caattaaata atgagcaatt
    11341 aaaacctgta tttgattttt ttaatcttaa actccaaata gcaaattcaa atggttgggg
    11401 taatggaaaa agtatcacga ttaatgaata taaaaaagac aaagaattag tcaatagttt
    11461 ttttaaaata gctgatttag atatagaagg tgtagagatt aaaacaagcg atattgatga
    11521 aaactcatta ccatcaaatc ttcaaaatat tccacaagaa ctcaaagaaa aaatcattca
    11581 agaagttaaa aatattcaaa atttaaaaaa tgtaaaaata ctagaagata tatcttttat
    11641 acacttaagt caaaaaaatc aaataaaatt tttaaatttt aacgatgaat cagatggcac
    11701 aagaaaattt tttaatatag caggtatttg gattgattct ttaaaaaaag gaaacatttt
    11761 aataatagat gagctaaata ctcacttaca ccctttaatg acaaaattct tagtaaatct
    11821 ttttcataat gaagatttaa acaaatcaaa tgctcagctt atttttacca ctcatgatac
    11881 ttccatttta aatcaagata tctttagaag agatcaaatt tggttttgcg aaaaacaaaa
    11941 taaagcaacc aagctttatc ctttgagtga ttttgaagag agtgaagaga gaagagataa
    12001 aacaaatttg gaaaatgatt atcttttagg gcgttttggg gctttgcctt attttaaaga
    12061 aatactatca tcatggagtg ataatgggaa ctgatgattt acgcaaaaaa agaaatacaa
    12121 aaacaagaga tagagaagca aaaagaaaaa aaaatgaaat tatacttata gtatgcgaag
    12181 gtgaaaaaac ggaaaaaaac tatttaaatc aattaaaaga tttttttaga ttaagcaatg
    12241 taagcataaa tattatttca agtaaaaaac caaacccttc acaaatagta gagtttacca
    12301 aagaaaaaaa taaagattat tcctataata aagtttattg tgtatttgat aaagatacgc
    12361 attcagattt tgacaaagca aggcaagaat gtgaaaaata caaatttgaa gcaattacct
    12421 caaatccttg ttttgaattt tggatacttt tacattttac atacactaca aaatcattta
    12481 gcacaaatag tccttgtaat gaattaattg agagcgattt aaaaaaacat ataaaagatt
    12541 ataaaaagga ttataatttt acaagcatta taaagcaaaa tcttagtaca gctattgcaa
    12601 atgctcaaaa agcgaataaa gaagcagaaa aaaataacta tacaagctca tatactttta
    12661 tggataaact tgcacttaaa tttcaagaat taaacagcgc aagaataaac caatgacaaa
    12721 tttaccgcag ggttgggaag ttaaaacgct tagcgagata ggtgaaattg ttacgggttc
    12781 aacacctagt aaaagtaatt tagattttta tggaaaagat tatccatttt ttaagccgag
    12841 tgatttcgag caaggatatt ttttagaaaa tgctggagat aatctatcaa aactaggttt
    12901 tggcaaagct agacagcttc cacctaaaac aattcttgtg gtttgtatag gttctttagg
    12961 taaagtagca ctaactaaag ttattgggag ttgtaaccaa caaataaacg caattattcc
    13021 tcataaaaat ataatttccg agtatattta ttattattgc atatcttcta aatttcagtc
    13081 tatattattt tcaaaagcac cacaaacaac tttagctatt ttaaataaga ctgaattttc
    13141 caaactcgaa attatttatc caaaagacat aaaagagcaa gaaaggatag tggggatttt
    13201 ggattttgct tttagtaaga ttgatgaaaa tatcaaaaaa gcaaaagaaa atttagcaaa
    13261 tattgatgag cttatgcaaa gtgctttaca aaaggctttt aatccactta atgataatac
    13321 taaagaaaat tatcaactcc cacaatcttg ggaatggaaa agcttagggg atactagcaa
    13381 ctatggaaaa acatcacaag taaaacctag tcaattaaaa ggtaatgatt ggattttaga
    13441 acttgaagat atagaaaaag aaagcggtgt tttgttgcaa aaagtgttat ttcaggatag
    13501 acaaagtaaa agcaataaaa ttaaatttaa caagggtgat attttatttg gaacattgcg
    13561 tccatatctt aaaaaagtga ttatagctga tgataatggg gcttgctctt ctgaaataat
    13621 gccattttct acgggtaatt ccataacaaa tcattttatt tattattatt tatttgccaa
    13681 ttttttgcac gatagaatct caagtttaac ctatggtgca agaatgccta gacttggaac
    13741 aaaagatggc aaatccctac aaatccccct accaccttta caagagcaag agcaaatcgc
    13801 agagcattta gattttgtgt ttgaaaaggc aaaggcttta aaagagcttt acactaaaga
    13861 gctaaaagat tatgaagagc ttaagcaatc cttacttgat aaggctttta agggagaatt
    13921 ataatgttaa aaaatttgcc aaattttaac acattggctt gatatgttaa aaatttttga
    13981 tttttttaac atattgcagt tcaaaaacaa aaataaaaaa taaaactaga ctttgataaa
    14041 actattttaa aagctttaaa gggagaaaat gcaaaacaaa atcgataaaa tcacagatat
    14101 tctaagaaga gatgatggca taagtggtgc tatgcactat acagagcaga ttggctggat
    14161 acttttttta aaatttttag atgattatga gacaaattta aaagatttag cgtttttaga
    14221 tggcaaagat tataaaagca ttttagaaga aaaatttagc tggagtgttt gggcagcgcc
    14281 taaaaaagat ggcaaacttg atgtaaaaaa tgctttaagt ggatcggatt tgcttgaatt
    14341 cgtaaataaa gagctttttc cttatcttaa aaattttaaa aataatgatg attttaaaag
    14401 tatagagtat aaaatcggtg gaatttttga atttatagac aatcgcatag caaatggaca
    14461 tactttaaga gaagtgataa atatcattga tgagattagt tttaataaag aagatgaagt
    14521 atttgcctta ggtgaagttt atgaaaaact tctaaaagat atgggtagcg atggtggaaa
    14581 tagtggagaa ttttacaccc ctcgtccttt gataaagact atggtggaag taatagatcc
    14641 taaaccaaaa gaaagaattt atgatccttc ttgtggtagt tgtggatttt tagttgagag
    14701 ttttttacat attttatata aagacagaac caaaggcaaa aaagcaaatt taagcgtaga
    14761 agagcttgaa tttttaaaaa atgatgctct ttttggtaaa gaaaaaactc cgcttagcta
    14821 tgcaatgggc gttatgaata tgatattaca tgaaatttca agtccaaata tcataaaaac
    14881 aaatacttta agtaaaaaaa taacagatat aacagaaaaa gataaatacg aagtaatact
    14941 tgcaaatcca ccttttggtg gcaaagaaaa agaacaaatt caagaaaatt ttcctataaa
    15001 atcaaatgct actgaacttt tatttttaca gcacatttta aaatctttaa aaaacaacgg
    15061 aagatgtgcg atcatcgtgc ctgaaggtgt gctttttcaa aattcaaatg cctttgtgag
    15121 tgtaaaaaaa gatttactag atgattttaa tttagaatgc gttttgagtt tgccaagtgg
    15181 ggtatttttg ccttatagtg ctgttaagac taatgtgctt tttttctcta aaggtaaaaa
    15241 atgtatttgt gaaggcgatg gagtttatta ctacgaactt ataccgcctt ataaacttac
    15301 taaaaataag cctttagaat acgcacattt taaagaattt ctaaaatgct acaaagaaag
    15361 aaaaatcact gctaattctt ggcttgttag caaaaaagag cttgaagaaa gaaactatga
    15421 tctaagtgct aaaaatccaa atgtaaaaga agaaaaaatc ctaagaacta gcgaagagat
    15481 tttaaattct ttagaagaaa atctaaaaac acaacaagaa tatctaaatg agcttaaaag
    15541 catactaaaa tgattgcaag ttttttgata aaaactaatt tacaaataac ttctaagctc
    15601 aatttacaat aaatatttat tgcttgcatt ctacttttta atatcatcaa gcaaatttag
    15661 ggcatttaaa gcttttggat aaccgatata tggaataaga gctgcaatga tatttagcaa
    15721 atcttttcta ctttgctcca tgttaagatt gccttgtatg tgagctttta cttgattttc
    15781 tagcccacca agtgagataa gatatacaag ggttaaaagc tctctagttt ttagatcaag
    15841 tcccatgcgt gtatagtagt ctccaaaaca attcgcactc aaaaaatcat ttataaaagc
    15901 tttatcttct ggtgtagttt ctatcatttt agtgatattg gcttcactaa aaatagcatt
    15961 ttgtatttcc ctgcctttta ttttgcgatt ttcttgcgta gtagtacctt gtggagttaa
    16021 aactaaggcg atatttagtt ttttaaacac tttattgcaa aggcttaaaa aatcacatac
    16081 tctagcaaaa cccacataag gcgtagcttg ataaatcact tctttaatga caataggact
    16141 tatatcgttc ttgattgcac cttgaagtaa agctttaaac tctatttttc cacctactgc
    16201 taaagtagaa gcaagggtga ttaaaaaata tttttgtgta tccaaatttg cttttacaaa
    16261 actctcgcca aaagtaaaat taatgtgatt agtaaaaaac tccttatcgc ttgtaaaaag
    16321 cagtttttct tccacttttc caaaaaattt ttcaaaaatt tctcttgctt tttgtcttaa
    16381 ttgcatggtt ttatcctttg tgatttttaa agtttataaa aaagagcatt taaaatactc
    16441 aaaaaaaaca taaaagtttt tataaaattt ttatgtttta tttacaaatt tctttactct
    16501 cttgcttctt ttaaggcatt ttcatattct tcatcgctaa caagctcaag ccattctaca
    16561 tttttaccct ctttctcgcc tgtaagtgct atgtgtgttc cactacttgt attagttgca
    16621 ccatgaaaat gctttactcc tataggacag cttatgacat cgcctttttt agctataaag
    16681 gctttttggc ctggaacttt tgtgatgatt tcgccctctg ttacgattaa ggtttgtcct
    16741 tgaggatgag tatgccatgc acttctagca ctggcttcaa attcaaccaa agccccacta
    16801 aaatttctcc actcatttga tttaaacatc atagaaactt ttacattttt gctaaaaaat
    16861 ttactatcac ctttaaaact tccatgaatt cctgcttttt ctaattcttg cattttacct
    16921 cattttttag tattataaaa catgagagct actctaagtc aagtaaaaat ttaaaatctt
    16981 aatttcattt tttctatcct acttcttaca aaaatcatga taattcctaa aatcaacaaa
    17041 acaatagtat ttacgataat ataacgcgta tcgctcaaag aaatcacaag tccacaaata
    17101 gcagttccgg tgcttaatcc tatattggcc acgcttataa aaagtccatt gctaaaatta
    17161 gcagcctttg gaaagggata acttatcata aaatgcgtgc cgttattcat cacacctgct
    17221 aaaattccta atataaaggc aaatattata agtataattt cactataaaa actaaaaagt
    17281 aaaatataaa atcctatcat aattaaaggt gttaaaatca aagtaaaatt tgcgttttta
    17341 acaagggtct ttccggctat ataattgcct ataatatttg aaaaaccata aatagccaat
    17401 acaatactaa ttaaagtaaa attcatcttt cctacactat gtaagaaatc agaaaaataa
    17461 gagtaaaaac cccaaattcc agcatttata caaataacac aaagtatgct aatccataaa
    17521 agtgggtatc ttaaaataag caattgtttg cttattttta cagaatttac ttttttaaaa
    17581 tcaggaacaa aaaataaagt tgctataaaa gataaggtat ttaaaaatac aaaaaataac
    17641 attgccattt taaaactaaa atttccacca aaataactag tcataggtac acccaaaacc
    17701 attccagcac taactgctgc aaaaatctta gctgtagctt ttggaatttc tttcttatct
    17761 tcgaccaaat ttgcaaccat acttagagca agagctatat aaataggatg aaaaaaagca
    17821 ggaatagctc ttaaaataag caattgccaa aattcactca caaaagcaga agttaacgag
    17881 cttaagataa acacagctaa acaaataagc ataagttttt taggattgaa atttgcacaa
    17941 agtagcggga caataggagc acaaaaagta atcacaagtg caaaaatact tacactccaa
    18001 cctgcatctg aaatacttac actaaaattt tgagaaacaa taggaattat acccatcatc
    18061 cctagctctg tgcttaaaat cccaaatacg cctaaacaca gcactaaaat aatttttata
    18121 tccgataaag aattaaattt ttcttgattc aaagcttgca tttttgccct ttattttaaa
    18181 atttttgcaa ttataaaaga tgagagtagc tctaagtcaa gtggtaattt ataaaatcaa
    18241 tatataaata tatcttgata tattaataaa tttatattac actgctctaa aaatttttta
    18301 ggaaaaacaa tgcaagtatt ttttagcact tttaaagagt ttttgtatct atttgtcgaa
    18361 ctttctgtac tttttatagg aatcaatatt ttagttgctt ttttaaatgc aaaatattca
    18421 aattttttcg aaaaacattt aaagcaagat aattttcaaa cacgcctaaa agctatattt
    18481 tttggttctc taacgccatt ttgttcttgc tcatcaatcc cacttttaaa tgctttttta
    18541 aaagccaaag taccacttag cgtttgtatg gcctatctta tcacttcgcc cttaataaat
    18601 cctattataa ttgtagtttt tatagtcagt tttgggatta aaatttcatt catttatata
    18661 ggatttttat atgcaattat tttatttatt tcatttttat tgtcaaaatt tgacacaagc
    18721 aaatttttaa ataatgattt tttagaaaat gagtttaacg aaaaaagtag ttgttgcagc
    18781 acaaaaaaat gttgttctag caaaactcat ataaatctta aacaaatttg tatcgatagc
    18841 ctgaaagaat ataaaaaaat tttaccctat gctcttgcgg gaacttttat tggggcatta
    18901 atacatgggg tttttccaag taattttttt gaaatttatt taaaagatta tggaatttta
    18961 ggagtattca tcgctgcttt tataggtgtt ttgctttata tgaattgcac agcaatgata
    19021 cctgtggcct tggttttaac ccaaacagga attcctttgg gaatcatgat gagtttttta
    19081 attgcaggat cgggttgttc tttacctgaa ttaattctac ttaaaaggaa ttttaaaaca
    19141 agttttttaa tactttttgc ccttttgatt attttaattg ctattttatt tggaatctta
    19201 atgtttttta tataaaggat tttaatgcaa aagtttttaa ccattatttc agcaatcaat
    19261 gatgaaagta gggttttgat tttgcatcat cttttaagat acaaagaact ttgtgtttgt
    19321 gatctacaag agctcttaaa catgggtcaa tcaagacttt caagacattt aaaaatttta
    19381 aaagatgcag gatttttata tgtcaagcgt aagggaactt gggcgtatta tggtatcaac
    19441 aatgagcttt taaaactgca ttctgacctt tttgaaaata ttaaaaatct agatattgac
    19501 aacatagttt tagaacaaaa cacttgcgag aacgataaat gaaacttgca tttatttgta
    19561 ttcacaatag ctgccgttct caaatggcag aagcactagc taggcataaa gctgaaaaaa
    19621 tgggcataga tatcgaagta ttttccgcag gaagcgacac ttctaagggt gtaaattcac
    19681 aggctataag acttatgcgt gaaatttatc aaatcgatat gaaaaagcat tattctaaac
    19741 tcattgattc tttgcctcaa aatttagaca tagtcgtaag tatgggttgt ggcgtggctt
    19801 gtcctagctt aaaatcaagg tattattttg attttggatt aaaagatcct agcggaagtt
    19861 atgatgatga atttaggaaa ataattcaaa ttttagatta taaaataaca gctcttttac
    19921 aagccataaa gacaaattct cttaaggact ttacatgtta ggttttatcg atagatttct
    19981 cacgctttgg atatttttag ctattttttt gggtttaatt ttaggtatca ttttccccaa
    20041 tatcgcttta ttttggaatt tatttgagta caagtctgta aatgtagtat tgactttatg
    20101 tcttattttg atgatgtatc cgcctttggc taaggttgat tatgcaaagc tttcaaaggt
    20161 atttgattct aaaaaagtta tcttgctttc tatgatttta aattggttta taggcccttt
    20221 gcttatgttt atcttagctt ttattttctt aaaagacgag cctttatata tgcaaggagt
    20281 tatcatcatc ggcttggcaa gatgtatcgc aatggtggtg gtatggagcg atttagcaaa
    20341 aggtgataga gaatacacca gtgctttagt agcgatgaat agcatttttc aaattttatt
    20401 tttttccact ttggcttata tttatctgga ttttttacca aaattactag gtcaaagcac
    20461 tttagctaca agtttagata tagatttttc agctctaagt aaaaatgttt tgatttattt
    20521 aggaattcct tttttaatgg gctttataac aagaacccta cttttaaaat acaaaagcaa
    20581 acgatggtac gaaaatacct ttttacctaa aatcagccct ataactctta tcaccctgct
    20641 agcaactatt atcattatgt gttcttacaa agcaaatgaa gtatttcacc tgcctttaga
    20701 agctttaaaa atagcctttg ttttgacttt gtattttatc ttcatgtttt ttctaacttg
    20761 gtttatttct aagaaaaatc atctttctta tcctaaaact tgttctttat gctttagtgc
    20821 tagtggaaat aactttgaat tagctataat catttgtatt gctacttttg ggcttcactc
    20881 agaacaagct tttgcaagca ttataggccc cttagtagaa gttcctgtac ttatcttact
    20941 tgtaaaatgg gcattaggca aaagtttaaa ttctaaaaaa atgaatcaag cctcatgatt
    21001 ctttacaaaa cttatcacaa ggttgatagt ccttgctttc tggattaaac ccatcgactt
    21061 catttgcaag catttcttca taaattttta tctttttgct taaaactttt tcactttctt
    21121 ttaatgtttt aatctggttt tgtaattttt tctttgtttg ctttaacatc tcttgtctct
    21181 ctttggcagt ttttataccc aaagagcaaa gttttatata atgtttgact tgttctattg
    21241 gcatacctga aattctaagc cattctatcc attttgccca ttctatatcg ctttttgaaa
    21301 aatatttcac actattttca tctttttgaa caaaaggaaa caaacctttt ttagcccaaa
    21361 atcttaaagt atgagcacta atttttgttt ctttttctac tttttttata gtataagcca
    21421 tattttctcc tttttaagat aaaaataaaa atttatttta ttttttttgt gataaaataa
    21481 tagccaaatt attagtttta tgctaaaaat aacaaagatt aaaaggaaaa taatgaatag
    21541 tattaaaatc aaactttccc tcattgcaaa tttaattgca atttttgcct taattgttct
    21601 aggtattgta agtttttatt ttacaaaaac ctcactacat gaaagcgctc ttaaaaatca
    21661 aactgatcta cttaaagtca cacagtctac cgttgaagat ttccgttcca caaatcaatc
    21721 ttttactaga gctttagaaa aagatatcac gaacttacct tatcaatctt taatcactga
    21781 agaaaatatt attaacaatg ttggtccaat attgaaatat tatcgtcata gtataaatgc
    21841 actaaatgtt tatttaggtt taaacaatgg aaaagtttta cttagtcaaa aatctaatga
    21901 tgcaaaaatg cctgaattac gtgatgattt agatataaag acaaaagatt ggtatcaaga
    21961 agccttaaaa acaaatgata tttttgttac accagcatat ttagatacaa atttaaaaca
    22021 atatgtaata acgtattcta aagctattta taaagatggc aaaatcatag gagtactggg
    22081 tgtcgatata ccatcagaag atttgcaaaa tttagttgca aaaactcctg gaaatacttt
    22141 tttatttgat caaaaaaata aaatatttgc agcaaccaat aaagaattat taaatccatc
    22201 cattgatcat tctcctgttc taaatgcata taaaacacat ggagactata acttttttac
    22261 ttatggatta gacggcaaag aaagacttgg aacttgtact aaagtctttg cttatacagc
    22321 ttgtattacc gaaagcgctg atattataaa taaacctatt cataaag
//
LOCUS       DAEBKH010000010        22059 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.010, whole genome shotgun sequence.
ACCESSION   DAEBKH010000010 DAEBKH010000000
VERSION     DAEBKH010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22059
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.010"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(31..858)
                     /locus_tag="KIL20_000249"
     CDS             complement(31..858)
                     /locus_tag="KIL20_000249"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HBD2720314.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALRL
                     GLIHELIEFKDLALCDMIFVATPVNAIIEILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            935..3154
                     /gene="bamA"
                     /locus_tag="KIL20_000250"
     CDS             935..3154
                     /gene="bamA"
                     /locus_tag="KIL20_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HBD2720315.1"
                     /translation="MKKHLISICALVAIANAATIKDIKFIGLNHLSNTSAINITGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNRILEIIVTEKPTIAKVTITGIASNDRK
                     QVESILGIKRGTLLDEGSIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDDTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLINPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEVGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            3154..3876
                     /locus_tag="KIL20_000251"
     CDS             3154..3876
                     /locus_tag="KIL20_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HBD2720316.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDENQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKDNPKQMILDPLDGSSNFVSKIPFYGTSIALI
                     EKDQAKSAFVCNLVSQEIFAFNNNQSFKSNLSDPKYSPLTPNLFSKIGIVEKISLYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTVAALTIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            3885..4727
                     /locus_tag="KIL20_000252"
     CDS             3885..4727
                     /locus_tag="KIL20_000252"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HBD2720317.1"
                     /translation="MNFADIFSKIRRQQPSVKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAVQRAITSKTPLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGTDLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            4729..5178
                     /locus_tag="KIL20_000253"
     CDS             4729..5178
                     /locus_tag="KIL20_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HBD2720318.1"
                     /translation="MQVNIFCIQKSDEFKTWSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKELTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            5190..5552
                     /gene="dksA"
                     /locus_tag="KIL20_000254"
     CDS             5190..5552
                     /gene="dksA"
                     /locus_tag="KIL20_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HBD2720319.1"
                     /translation="MKKNEIQNFKNILEERKKTILENLQSNSNEIEALHNSVPSDSVD
                     FSIIETGSQIDFTISTNLKEELIEIENSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            5542..6528
                     /locus_tag="KIL20_000255"
     CDS             5542..6528
                     /locus_tag="KIL20_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720320.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFVYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRAVAQLFKTLKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYSKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSAAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAHLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKINLNQLIQ"
     gene            6525..7451
                     /locus_tag="KIL20_000256"
     CDS             6525..7451
                     /locus_tag="KIL20_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HBD2720321.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFVSIHGRTRKQLYSGKADYESIASAKESVKIPVIANGDINAQNAKEVYEITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GYKDASAFRDEVNRIDNTEKMRKKIEEFFSLT"
     gene            complement(7476..8678)
                     /locus_tag="KIL20_000257"
     CDS             complement(7476..8678)
                     /locus_tag="KIL20_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720322.1"
                     /translation="MINGINSYSNYNYTNTFSNTTSNTKSSNAIANNNLVSDKSQAVD
                     KILGYGVDKEGFFTSDFNEAAGLPKDYKIYADGLNNFVNNFIKRQPFYSQIDIAKTIG
                     NAYNSFSSFVKDKGLGESFQEQDLKNLSQKDGVNYWQELQSDNAFIWKLTDENIADLG
                     SNKYQIHDNKISKGGALIAFFINNLSTIKGQTTLLGKLAGLNSDTDNNEIKEFLSFMN
                     KNPLKYSYEQDGWGNPMGDSLSIWNYINRAKNLGDDKLIKTIKNLGDEYNKLINSNMS
                     LEEFKTKYLDFKQRHDEFVKSLEEAEKAKGVDYSNPLKNTNNKETSEEGKEKPFKPIQ
                     AESKNKETYKDDNTRSELVKKLLKDKFSTSKELELLFGMKFSDDDAGEFNKILSLNST
                     PKSIDIKA"
     gene            complement(8798..9208)
                     /gene="ybeY"
                     /locus_tag="KIL20_000258"
     CDS             complement(8798..9208)
                     /gene="ybeY"
                     /locus_tag="KIL20_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HBD2720323.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIECFNLPKSLIVRTLEIK"
     gene            complement(9205..9819)
                     /gene="recO"
                     /locus_tag="KIL20_000259"
     CDS             complement(9205..9819)
                     /gene="recO"
                     /locus_tag="KIL20_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HBD2720324.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNPITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            complement(9819..10340)
                     /locus_tag="KIL20_000260"
     CDS             complement(9819..10340)
                     /locus_tag="KIL20_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HBD2720325.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            complement(10345..11100)
                     /locus_tag="KIL20_000261"
     CDS             complement(10345..11100)
                     /locus_tag="KIL20_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HBD2720326.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGVIVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFANLHTESFWLQKA"
     gene            complement(11097..11786)
                     /gene="pfs"
                     /locus_tag="KIL20_000262"
     CDS             complement(11097..11786)
                     /gene="pfs"
                     /locus_tag="KIL20_000262"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HBD2720327.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQALLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            complement(11783..12703)
                     /gene="fabD"
                     /locus_tag="KIL20_000263"
     CDS             complement(11783..12703)
                     /gene="fabD"
                     /locus_tag="KIL20_000263"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HBD2720328.1"
                     /translation="MKTAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNG
                     AFDFLEALSLVNKRGLFMQEDCVKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEK
                     VLKPNFKAVISNVNAKIYTSKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIDEFLKVI"
     gene            complement(12703..13266)
                     /locus_tag="KIL20_000264"
     CDS             complement(12703..13266)
                     /locus_tag="KIL20_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HBD2720329.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEISENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGGGGCCGGGGCGCH"
     gene            complement(13281..14228)
                     /locus_tag="KIL20_000265"
     CDS             complement(13281..14228)
                     /locus_tag="KIL20_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HBD2720330.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSSLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            complement(14232..14729)
                     /gene="pal"
                     /locus_tag="KIL20_000266"
     CDS             complement(14232..14729)
                     /gene="pal"
                     /locus_tag="KIL20_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HBD2720331.1"
                     /translation="MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            complement(14806..16014)
                     /gene="tolB"
                     /locus_tag="KIL20_000267"
     CDS             complement(14806..16014)
                     /gene="tolB"
                     /locus_tag="KIL20_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HBD2720332.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYTFEYALNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQASVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            complement(16024..16803)
                     /locus_tag="KIL20_000268"
     CDS             complement(16024..16803)
                     /locus_tag="KIL20_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HBD2720333.1"
                     /translation="MKNYGLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQIDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGASSAPKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEAKVKND"
     gene            complement(16806..17195)
                     /locus_tag="KIL20_000269"
     CDS             complement(16806..17195)
                     /locus_tag="KIL20_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HBD2720334.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSAPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            complement(17204..17758)
                     /locus_tag="KIL20_000270"
     CDS             complement(17204..17758)
                     /locus_tag="KIL20_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HBD2720335.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            complement(17758..18147)
                     /locus_tag="KIL20_000271"
     CDS             complement(17758..18147)
                     /locus_tag="KIL20_000271"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HBD2720336.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHATLVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            complement(18151..19548)
                     /gene="atpD"
                     /locus_tag="KIL20_000272"
     CDS             complement(18151..19548)
                     /gene="atpD"
                     /locus_tag="KIL20_000272"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HBD2720337.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            complement(19573..20457)
                     /locus_tag="KIL20_000273"
     CDS             complement(19573..20457)
                     /locus_tag="KIL20_000273"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HBD2720338.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKAVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLEDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            complement(20466..21971)
                     /gene="atpA"
                     /locus_tag="KIL20_000274"
     CDS             complement(20466..21971)
                     /gene="atpA"
                     /locus_tag="KIL20_000274"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HBD2720339.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            complement(21985..>22059)
                     /locus_tag="KIL20_000275"
     CDS             complement(21985..>22059)
                     /locus_tag="KIL20_000275"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The delta subunit is part of
                     the catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit delta"
                     /protein_id="HBD2720340.1"
                     /translation="LGYELSFSMKALQNKLNEYILKII"
BASE COUNT         7528 a         3843 c         3014 g         7674 t
ORIGIN      
        1 tattatattt tcagtaaata tctagcaaat ttataaaatt tctcttagag tattagcttg
       61 tttcatccat tctcttaatt catcattttt gtctaattgt atcatttgtt tacatctctc
      121 taattcttgt tgaaaaaaat caatagaact taataagtta tctttatttt gtaaaaaaat
      181 actttcccac atttgtggcg atgatttggc aattctgctc atacctttaa aagatcctcc
      241 agctaaatga acaatatttc ttttatcttc ttctttcatt acaaaatttg ccaaagaaaa
      301 acttataaca tgaggcaaat gtgaaatgat agcagcatga tgatcatggg ctttactatc
      361 cataaaaaca attttcatcc ctaaatgaga aaaaatttct accgctcttt tttgatgcaa
      421 atcatcagct atttcactat cgcaaagaac acaaactgca tctttataaa gctctttaaa
      481 agctgctttt ggacctgaat tttcagttcc tgtcatagga tgagcaaaaa gagtttgttt
      541 gattaaattc ttaggcaaac tttctataat ttttcttttt gtacttccaa gctctataat
      601 tgttacatta gaaggcaaat caactaactt ttgcaaaatt tctataatag cattaacagg
      661 agttgcgaca aaaatcatat cacataaagc taaatcttta aattctataa gctcatgaat
      721 aagacctaat cgcagggcat ctttttcatt ttctttactt aaatccatac cataaacaca
      781 agaaataagc ttattttctt tcaaacaaag ccctaaagat ccacccataa gcccaagccc
      841 tataattgct attttcatac tttctacctt agtttttttg ttaaattttt tttgctatta
      901 tacagctttt aataaagctt taggtaaaaa atcaatgaaa aaacatctta ttagtatttg
      961 tgctttagtt gctatagcca atgcagcaac cattaaagat attaaattta tcggattaaa
     1021 tcatttatcg aacacaagcg ctataaatat cacggggctt aaaataggcg aggaaataaa
     1081 tcctgcaaaa atcaacactg ctattcttaa tctttataaa caaaattatt tcgaaaatat
     1141 tgcagtagaa aacaacaata gaattttgga aattatagtt accgaaaaac caactatagc
     1201 aaaggttact atcacaggta tagcttcaaa tgatagaaaa caagttgaaa gtattttagg
     1261 gattaaaaga ggcacactac ttgatgaagg aagtataaaa gaagctattg aacgcattaa
     1321 agcttattat gaagcaaaaa gttattttga tactattgta gaatacaaaa aaaagacttt
     1381 agaaaatacc gatggactag agcttgaatt tatagtaaat cgtggcgaaa atatcattat
     1441 tgataatgtt catttaagtg gagccaagaa attttcatat tctgatatag aacctgctgt
     1501 tgttaacaaa gaaaaagaat ttatgggatg gatgtgggga cgcaatgatg gaaaattaaa
     1561 agtttttgaa cttagtaacg atagttcaag aattgctgat gaatatatga aaaaaggata
     1621 tttagatgtt caagtatcct cgccttatct taaaacctac acagatactt atcaagcaaa
     1681 tttgacttat tttatcaaag aaggaaagcc ttataaaatt aaaagtataa gcatagaaaa
     1741 tcctttattt gatgataaac aaaatgcaca aaccgtaaaa gatttaagat caagtgctgg
     1801 caaaactatc aatatcgaag acattagaaa agatgttaaa accatagaaa cacaaagtgc
     1861 tgatttaggc tatgcgtttg tagaagtcta tcctgatatt caaaaaaatg atcaaactca
     1921 agaagccacc gttgtattta aagtaatccc tcatgataaa gtttatataa gaaatgttat
     1981 tatttcagga aattcacgta ctgtagatcg cgtcatacgc cgagaattat atataacaga
     2041 aggtaattta tacaatagaa cagacttaag cgagtcaaaa aatgctttaa aaagaacttc
     2101 ttattttgac gatgtaaata ttaaagaaga aaaagttgat gatacacata ttgatttgat
     2161 tgttgatgtt aaagaagctt ctacaggagc tatttctgga ggtattggct atggatcaag
     2221 cgatggtatt ttacttaatg cttctttatc agatacaaat atctttggtt caggaataaa
     2281 aagctctgta agcgtagata aaagcgatga taccttatca ggaaggatta gtctcataaa
     2341 tccacgcgtt cttgatagtc aatatagtct gggtggaaca ctttattcaa atgactatga
     2401 atgggataat tattcagaaa aaaattacgg ctttgatata acagttggac gccaatttgc
     2461 aagatactat aatgtaagct taacttataa tcttgaacaa agcgatatat atcacttaag
     2521 tccaactctt ttaagaacag gatatgaact tggcaaaagt attaaaagct ctataactcc
     2581 agcaatcacc tttaacaata cagatgatta ttatctgcca cgatcaggta tcattgcttc
     2641 aactagttta gaatacgctg gacttggcgg agatcaagaa tttatttcat caagctctaa
     2701 atttaacttt tatcaaggtt tgcaagacta tataggatat gatcttattt atcgctataa
     2761 agcgagtttt tataaagtat gggatgaagg ctatttgcca attaatcaaa gaatttattt
     2821 aggtggtatt agatcgatac gcggttttga aagcagaacg gtaagtccta aaaaccaatg
     2881 gggagatgaa gtaggtggaa ccatagcttt tgccaattcc gtagaactta gcttcccttt
     2941 gattgataga atcaaacttc gtggtagcgt gttttttgat tatggtatga tagggcgtaa
     3001 aaatttagat gaaataaaaa gaatgagtac aggtataggc attgaatgga ttacaccaat
     3061 tggaccttta cagcttgtat ttgccaaacc tcttaatgat aaaaaaggtg atgatactaa
     3121 tagttttgaa tttaatcttg gaacacgctt ttaatgaaag aatttttaga tgcttgcttg
     3181 aatgcaaatt tgcaaatacg caagtatcta aacaatatcc cacaaaatga tcttaaactt
     3241 tgctctaaat taggctatga tgaaaatcaa ggctatgagc ttgacttaaa atgtgaacaa
     3301 attttcataa aatatcttag ttgttttggg caaatttttt ctgaagaaag tggcttgatc
     3361 gggaaagata acccaaaaca aatgattctt gatcctttgg atggaagttc aaattttgtt
     3421 tctaaaatac cattttatgg aacttctata gctctcatag aaaaagatca ggcaaaaagc
     3481 gcttttgttt gcaatcttgt cagtcaagaa atttttgctt ttaataacaa tcaatctttt
     3541 aaatctaatc tttccgatcc aaaatactca cccttaacac ctaatctatt ttctaaaata
     3601 ggtatagttg aaaaaatttc actttatcca gaacttctcg attttttaac aaaaaatcaa
     3661 ttaaaatttc gctctttggg cgcaacagcc ttaagtctcg cttatgcttc gtattttagt
     3721 tttgtattaa ttcttggaaa aacacgaatt tttgatacag tagctgcttt aacaattcat
     3781 caaaatttat atatagaaaa aaatgaaaat ttccttctcc taagccaaga caagaaaatt
     3841 tttgatataa tcttagaatt tttaaaaaat aattaggtga atatatgaat tttgcagata
     3901 ttttttcaaa aataagaaga caacaaccta gcgttaaaga agctccaaat cactgggtaa
     3961 aatgccaaag ttgtcatgct ttgatgtatt ataaagaaat agaatcttgt tttaatgttt
     4021 gccctaaatg taattatcac atgagaattt cagctgatga acgtattaaa cttttaagcg
     4081 atgaaggcag ttttattgag tatgatgcaa atttagaggc tatagatcct ttaaaatttg
     4141 ttgatagtaa atcctataaa aaacgcctta gcgaaggtga aagtaaaaca ggtagaaaaa
     4201 gttctgttat tagtggagaa tgtgaaatca atggtttaaa aacccaactt gttgtatttg
     4261 atttttcttt tatgggcgga tctttaggtt ctgttgaagg agaaaaaatc gttagagctg
     4321 tacaaagagc catcacaagc aaaacccctc ttgtcatcgt aagtgcaagc ggtggagcta
     4381 gaatgcaaga aagtacttat tctttgatgc aaatgagcaa aactagcgcc gcacttaaac
     4441 ttcttagcaa agaaaaactt ccttatatta gcattttaac tgatcctact atgggcggag
     4501 taagtgcttc ttttgcttgg cttggagatt taatcatcgc tgaacctgaa gctttagtcg
     4561 gttttgctgg tgcaagagtt attaaacaaa ctataggaac agatttacct gaaggctttc
     4621 aaaaagcaga gttcttgtta gaacatggac ttatagatgc catagttgaa agaggagaac
     4681 aaaaacaata tcttagcgat gtgctaaaat ttttcagtgg aaaataattt gcaagttaat
     4741 atcttttgta ttcaaaaaag tgatgaattt aaaacttgga gtgagaaata ctctaaactt
     4801 atttctaaat acgccacttt aaaagaaata aatgttttta ataaaaaaat agccttagct
     4861 caaaatttaa atgccataga agcaaaaaaa agctatgaag aagcttttat gccttataaa
     4921 aaaggctatt gtatcgctct tgatgaaaaa gggaaagaac ttacaagtat agaatttgca
     4981 aaactcatcc aagataaaaa tgaattaagt ttttttatag gtggtgctta tggtttaaga
     5041 gaagaattta atcaaagttt ggattttaga ctatcattaa gcaaacttac tttagcacat
     5101 caatttgtta aaaccttact tttagaacaa atttatcgtg cattttgcat caacaacaat
     5161 cacccttatc acaaatagaa agttttaaaa tgaaaaaaaa tgaaatacaa aatttcaaaa
     5221 atattttaga agaaagaaaa aaaaccatct tagaaaattt gcaaagcaat tcaaatgaaa
     5281 tcgaagctct tcacaatagc gtcccaagcg atagtgtaga tttttctatc atagaaacag
     5341 gctctcaaat tgactttact atcagcacca atctcaaaga agaacttata gaaatcgaaa
     5401 attctttaga taaaatcaaa aacggcactt atggaatttg cgaatcttgc gatgatgaaa
     5461 tcgactctca aagactaaaa gtcaaacctc acgcaagata ttgtatcact tgccgtcaaa
     5521 ttgcagaaca aggaaaaaaa catgaaaatt aaactctttt tacttgcaag ttttatttat
     5581 atagcactta tttttgcctt tgcttggcat ctagaactag gaagctatac tctaaatatc
     5641 agtacttata cctttgaact acctattatg atatggcttg ttattccttt atttgtttat
     5701 atgattttag ccgttttgca catagcattt tatggatttt tgcgttattt aaaatttaag
     5761 cattttttta aagatgcagc taaatttgaa gcttatactc aagatttgct ccttgaaaaa
     5821 gatcttaaaa ccacttttca aacaaaagaa tttagagctg tggcacaact ttttaaaacc
     5881 ctaaaaacac atgaaaaaat tccacactca aataaaatca atgaaatttt agatcttatt
     5941 gatggtttaa ataaaaacga attttttaac cttagtaaat ttaaactcga aaataacaat
     6001 gttttatatt tgcaaaatga aaaaaatcat ctcaaaaacg atgcaaatta tgcctatagc
     6061 aaacttaaaa accttaatga aatcaaagat gaatttgaag aaattgcttt taatactctt
     6121 atagaaaaag ctagttatga acaaattaaa aatgtaaaaa tccctaaaaa gccttctgaa
     6181 gttctcacac ttatcaagcg ttttaaagaa ggaaatttag aacttagtgc agcagaatac
     6241 gaagttttac tttcacacaa tatactaagc gaaaaagact atcttaacgc agcaaaacta
     6301 agtactaaac ttttaaatcc tgatgctatt ttaggaattt ttaacaaaat taaaaatgaa
     6361 aaaagcgaag ctttaagagc acatttatat cttttagctg aatttggact tttagatgag
     6421 ttaagagagc aaattcacaa tgatgataag aaatttaatg attttaaggc ctttttagcc
     6481 ttgcgtgaaa aaaatatcaa aatcaatcta aaccaactca tacaatgata gattttagca
     6541 aaaaaccttt atttttagct cctatggcag gtttttcaga tctgcctttt cgtaatgtag
     6601 taaaaaaatt tggtgctgat attaccataa gcgaaatgat aagttctaat gccttagttt
     6661 atgaaagttc taaaactcta catatgctag aaagagctga attagaaaat ccttatatag
     6721 tccaaattgc aggtggagat aaagaagtgc taaaaaaagc agtgcaaatg ctaaatgaaa
     6781 tggattttgt agatgggatt gattttaatt gcggttgccc tgtaaataaa gttgttaaac
     6841 aatgcgctgg cagtgctttg ctagaaaatt tagagctttt taaaaatctt gtaggagtaa
     6901 ttaaagaaaa caataaaaaa agccttacaa gtgtgaaatt tcgactagga tttaatgaaa
     6961 aatatcctga aaaaatggct aaaatttgtg aaagcttggg ggtggatttt gtaagcatcc
     7021 acggacgcac aagaaaacag ctttatagcg gaaaagccga ttatgaatcc attgccagtg
     7081 ctaaagagag cgtgaaaatt cctgtgattg caaatggtga tattaacgca caaaacgcta
     7141 aagaagttta tgaaatcaca aaatgcgatg gactcatgat agggcgtgca agcgtgggaa
     7201 atccttggat attttatgaa atcaaaagcg gtaaaagcgt agatgaaaaa ctcaaaaaag
     7261 aaatcatact cactcatttt gatgaaatga taaaacacta caaagatcaa ggcgtaagta
     7321 tatttcgcaa gcatttacac gagtattcta aaggctataa agacgcttca gcctttagag
     7381 atgaagtcaa tcgtatcgac aatacagaaa aaatgcgaaa aaaaatagaa gaatttttta
     7441 gtttaacttg attgattttt ataatttaaa aaaccttaag ccttaatatc tatacttttt
     7501 ggtgtagaat ttaaagaaag gattttatta aattctcctg catcatcatc actaaatttc
     7561 ataccaaaaa gaagttctaa ttctttacta gtgctaaatt tatcttttaa taattttttt
     7621 acaagttcgc ttcttgtatt atcatctttg taagtttctt tgtttttact ttctgcttgt
     7681 ataggtttaa aaggcttttc tttgccttct tctgaagttt ctttgttatt tgtatttttt
     7741 aaaggattgc tataatctac accttttgcc ttttctgctt cttctagtga ttttacaaac
     7801 tcatcgtgtc tttgtttaaa atcaagatat ttggttttaa attcttctag gctcatatta
     7861 gaattaataa gcttattgta ttcatctcct aaattcttaa tagtttttat tagtttatca
     7921 tctcctaaat ttttagctct atttatataa ttccatattg ataaactatc tcccatagga
     7981 ttgccccagc catcttgctc gtaggaatat tttaaaggat ttttattcat aaaggacaaa
     8041 aattctttta tttcattgtt gtccgtatcg ctattaagtc cagctaattt acccagtaag
     8101 gttgtttgtc ctttaattgt gctaagatta tttataaaaa acgcaattaa agcaccacct
     8161 ttagatattt tgttatcatg tatttgatat ttattagaac ccaaatctgc tatattttca
     8221 tcagtaagct tccaaatgaa agcattatcg ctttgtaatt cttgccaata atttacccca
     8281 tctttttggg atagattttt taaatcctgt tcttgaaagc tttctcctaa tcccttatct
     8341 ttaacaaaag aagaaaaaga gttataagca tttcctattg ttttagcaat gtctatttga
     8401 gagtaaaaag gttgtctttt aataaagtta tttacaaaat tatttaaacc atctgcataa
     8461 atcttataat cttttggcaa acctgctgct tcgttaaaat cacttgtaaa aaagccctct
     8521 ttatctacgc catagcctaa aattttatct accgcttgtg atttatcact tacaaggtta
     8581 ttatttgcta tggcattaga tgattttgta tttgaagtag tattactaaa agtatttgtg
     8641 taattgtagt ttgaataaga atttatacca ttaatcattt ttgccttcct tgtaaatgaa
     8701 atttattaag ataaatcggc aaaaatgatt ttttttaata tttttactca tatatttaaa
     8761 atataaagcg caagtcttct agctcttgaa aaaaatctta cttaatttcc aaagtcctta
     8821 caatcaaact tttaggcaaa ttaaaacact ctataagttc tttctctttt tctctcattt
     8881 ctccattatc attttcatga tcaaaaccta gtaaatgaag catagcgtgg ataaaaagca
     8941 agcttatttc ttcttcatag ctatgcccta actctttagc cttctctttt gccaaatcca
     9001 cattgatcac aacagaaccc aaaggcaaac tctcatcgat attttcaagc ggaaaagaaa
     9061 gcacatcagt ggttttatct tgttttcttt gctctaagtt aatttcttgc atttctttac
     9121 tatccacaaa gacaagctcc acatctttag gacttaaaaa acttgctata gattctaaaa
     9181 aatcacattt ttcatcactt aatatcataa accttcctta atcaaatgat ataaattttc
     9241 tatttcttca tcatcaaaaa tcgcacaatt tttactgcta taaaattgtt ttagtttttt
     9301 ctcttcaaac tcaaatccta aagcacattg agaatgcgaa ggtaaaaaag cccttagtaa
     9361 tgtaatggga ttttgaattt tctcatcaca ggcgaaacaa aaaaaatctt tatgcaatct
     9421 tccttcaaat tccaaaattt ttaaataagc atcaacaata acacgctttg gattttgttt
     9481 ttcaaacctt ttcacacact catcaagtaa atcaaaataa aaactatcaa gctcttccac
     9541 atcttttaag tgtctatata aaagacggat aaattcttgc caaataagca ttttatccct
     9601 ttgcataatc cataaaaatc ccaaatgcaa tacatcttta agtcttggta aaaaactagg
     9661 attttcttct aaagcaaagt cgattttata gccacttaaa atactagaat gtctaagtcc
     9721 ataaaaacga taagccttaa taagcatttt aggacttaaa atataaacga tcaaatcctc
     9781 atctttaact ttttgagtat gaagtataaa gccttgcatt aaacaatttc aataccataa
     9841 gccctaagta tatcaaaagc ggatttttct aaattttcat caaaacttgc acttaaattt
     9901 tggtgtaaaa ttatccttgc attaggctta gcaccaaaag ctaaaatgat attacaaaac
     9961 acacaaatat gagaaacaag ccctgcaaaa tgaagttctt cataatcgct tttttgtatg
    10021 aaattagcta gttctaagct accaaaagta tttttataaa aaattttatg agctttttgt
    10081 aaaaaaggtt caaattcctt tggcatttgc caacccaaac tctctttaat acaatgtttt
    10141 acaggtaaat ttaaaccttc tttactttgt agataatgct catcatgcgt atcataggtt
    10201 aaaagcaaat gcgtgttatt aaaatcgatt tgatttaagg ctttaagaat attttctttg
    10261 atttttaaag ccttatcaaa acctaaactt ccatcaataa aatcattttg ataatccact
    10321 aaaacaaaag cttttttcat gcttttatgc cttttgaagc caaaaactct ccgtgtgtaa
    10381 attggcaaaa gcggttttta aacttgtaaa aagcttagga tgatcttttt ctaaatttgc
    10441 taaaagctgt ttagcttctt ctctagcgtg ggggaatttt acattttttt cgctgagttt
    10501 cataccagga caaaattcat ttcctatcac gctaagttca ttttgcgtag cattatccct
    10561 aagctgtctt tctcgcacaa aaatcaaagg gcgtatcaca attacaccgc gtttgctttg
    10621 ataaataggc gctaaggttc ttaaagctcc attatgaata aaattcataa aaaagctttc
    10681 tgctgcatca tctaaatgat gggctatagc aagcttgtta aaaccttttt caagagcgta
    10741 agtatataaa gctccacgac gcattctcga aaaataacta caaaaacttg aattttctct
    10801 tatggtatca cctgaaactt cataaatatt tgaatcaagc acgctatgtt taatgccgtg
    10861 ttcttcacaa tgtgcatgaa gatgagaata atcctcgccc atgccataac tcaaagttac
    10921 cgcttcaagt tcaaatttaa aaggagcatg agcttgcata cgatttaaaa gatgggctaa
    10981 agccaaagaa tctttcccgc cgctaagccc taaaagaacc ctatctccat ctttaataag
    11041 tccaaattta gcattagctt gtgcaacttg gcgtatgagt tttttgctaa gatttatcat
    11101 aatttctcgc acattttaag cacaaaattg gctgaaattt tagctgaatt gatcacaaac
    11161 tcatcaaaat caaattcagc cttttcccct gctttatcac tcatagctct taagataaaa
    11221 caaggcacct ttaaagcatc acaaaccaaa gccacgcttg cgccttccat ttcacaagca
    11281 tccgcattga aaatttctct aatttttgct ttttttgctt catcacaaat aaactcatca
    11341 cccgttgcaa taatacctgc acgcagtttg atatttaatt ccttagcaac ttctaaagca
    11401 agattgttta atttctcatc ggttttgata aaaatttcat tacctggaac aaaacctaaa
    11461 ggatgtccaa aagcggtaat atcaagatcg tattgagcta attttgttgc gtaaagcaaa
    11521 tcgccaattt caagttcagg attaaaagca cccgcaactc ctgtaaaaag caaagcttgt
    11581 gcgccaaatt tttctatcat cacactagca ctaagagtag aatttacctt tccgatttta
    11641 gaatacgcta aaacaagttc atgattttta tactttgcaa aataataagt attattagcg
    11701 tgttctattt ttgtataatc tttaagtgtt tcaagcaaag gagtgatttc ttcactcatg
    11761 gctcctaaaa ttgctatttt catcatataa cctttaaaaa ttcatcaata tcattcatat
    11821 ttgttaaagc ataagtttct tttgaagtga tttttttatt caaaccctta agcacgcttg
    11881 caccaaattc tatgaaataa tctacttcat tttcacatgc cttaatgctt tgtttataaa
    11941 gcacaggaga gataagttgt gcttttaaaa gttcaagggc ttcttctttg cttgtataaa
    12001 ttttggcatt tacattagaa attacggctt taaaatttgg ttttaacacc ttttcaagct
    12061 ccacacaaag cttagctgaa gcattttcca aaagaggaca atgacttgcc acgctcatat
    12121 ttaaaagcat agctctttta gctcctgctt ctttaaatac actttcataa cttgctaaat
    12181 caggttttaa acctgctaca acgatttgtc catcgcagtt ataatttgca gcgaaaattt
    12241 gcttgttttc tttttgtgct ttttgacaaa gctcttcaac cttttcatca tcaagcccta
    12301 aaacaaccat catacccgct tcaactttta cacaatcttc ttgcataaaa agccctcttt
    12361 tattgaccaa agaaagagcc tctaaaaaat caaaagcacc attgacagct aaggctgaaa
    12421 attctcccaa agaatgccct aaagcaaatt tcgaacttaa atcaggtttt ttttcaagta
    12481 aaacactata agccattaag gaatttaaaa cgatggcggg ttgagtaaat tcactttgat
    12541 tgagtttttc gttttcttca aaaagcaaat gtttaaaatc aatcttacaa aaatcacttg
    12601 cgttttgaag gagttctttg gcttttatag agttttcata aaaatctttt cccatgccaa
    12661 gactttgtga gccttgacct ggaaatatga acgcagtctt cattaatgac aaccgcaacc
    12721 gccgccacca cagcaaccgc cgccaccgtg tccgtgatga tgatcgtgtc catgtccgct
    12781 tccacaacca caactatgac ttcctgcaat aatacctgta agaatttcat cttcacttgc
    12841 agctctagca tctacgatat ttaaagaaaa aagtaaatca cgacccgcat aagggtgatt
    12901 ataatcaatt gtcacatcat tttcactaat ttcttttaca gttacacgaa cagtttcgcc
    12961 attttcacct tcgccaaaaa gctccatacc tacctttaaa tcaatacctg caaattgctc
    13021 ttttggtaaa gtttgaacgg cattttcatc gtattcgcct aaaccttttt cttttttaat
    13081 taccacatca gcattactag ggcaatcaag cttcatcact tcttcttcta agctttctaa
    13141 aatctgacct ttgcctaaaa taaaagaaat aggttgagag tataaatttg attctaaaac
    13201 ttcatttgta tttgcgtctt ttaactcata aaacattgaa actacactat ttttttctat
    13261 agccatttta tctccttaat ttattttcta ttaggtgaag cttttgcttc gggtgaattt
    13321 ggataattag tttttaaagc tttataaaaa ccatttgctg tttttgtatc acctgtttta
    13381 tccaatgaaa tggcagtatg atataaaagt tttgggaaat aatccccttt tgtactcaaa
    13441 gaagaacttt ttttataata aacaatagca ttgttataat ttttttgttt atactcgatc
    13501 tcccctaacc aaaaatttgc tcttgcaggt ttatactgct ttgttatgag aaaatttaat
    13561 tttgctttgg aatcttcaaa agcattttta tcaacatctt ttatcgctaa ttctaaaatt
    13621 tcattatttt ttttcttttt ccaagattca tcaatttgtt ttgctttatc atcttgggta
    13681 ttttgagtat tattgttttc aatggtacta tttgaatctg tagttgaaac aacaacacta
    13741 ggtgtaatag ttttaacgct taaatttgca tcatttaatt cgtttttaga aacataattt
    13801 gcattaatag catctactaa agaactaagt tcggctaaaa ctttttttac ttgcttatta
    13861 ttagcttctt gaatttttct actttcttca acataagctt ttaatttttg aatttcacta
    13921 gtaaaattat tttcaatatt ttgattattc tcttcaactt gacttaatct agaatttgat
    13981 ttagcatatt gagaatttat accttctaaa gtactttgta aaccctcgat tctttcgtta
    14041 atttcattaa ttctagcatt tgtttgtata ttttcattat ttaaattatc taacttttct
    14101 ttaaataatt tttcatttga agttaaacca taagaagaat tgcttgttat atctcctgca
    14161 ccaaaagctg agctttctgc ataaagtaaa gtagctccaa gaagagctac tgtgaatatt
    14221 tttttcatta attatcttga taatttaaat tcagcacgtc tgttttgcgc atcgcaagct
    14281 ttagtttttt cagtgcacac aggatttgtt tctccatagc ttttaacagc aattctatca
    14341 gcatttacac ctttagcgat taaagcttct tttacagctt ttgctctttt taaacctaga
    14401 gcttggttat attcatcagt tccccactca tcgcagtttc cttcaacagt aatacttaca
    14461 ccgcttactt cagtgttaaa gatattagca ttcgtgctta caacattttg catatcagga
    14521 cgaatgttga atttatcaaa atcaaaatat actttattta aagtatcatt aagttgagaa
    14581 atttttgaat caatatccca accatcactt ccacctgaac cacgatttga atcaacacta
    14641 ctatcaccgc ttacgctagt gctttttgtg ctacaaccac taataacaac tgcaagagct
    14701 gcaattgaag taaaaagaat ttttttcatt tatgaccttt caaagttaat aaattcttac
    14761 tattatatct aatttttaat taattttaac ctaaaattga aatttttacc aatcaattga
    14821 ttgaattttt ccaaccctaa gaggaaaata aaaagtctta tttgcattta cacgaataac
    14881 acctaaagca ctttgcgcac ctaaatattt gataaatact atacttccac catcactaga
    14941 aaatcttgga aataaatttt ttccatttgc tgtaagttga cgaatataat cactattaat
    15001 tgacatcaaa taaatattaa aaacacttgc ttgatttggt tcacgacttg aataaaccaa
    15061 aaaatcttta taagtcgaaa cagccgaatt gtttctacca tgaaaaacaa cttgttcagc
    15121 actattacta tttaaatctt gcataaaaat attaggatat cccaaacgat cgcttacaaa
    15181 taccacttta ctatcatctg agccaataaa atttccatta acatcaatac cagaataatt
    15241 agttaattgt gttagatttt tggtatttaa gtcatataaa taaacatcag gctgatcttt
    15301 tggagccatg gtaacaagta gtttacttcc atctacgctc acatcacttg ctacaaccat
    15361 accgccactt gataaaattt tactagcttt attggtattt aaatcataac ggtataaagt
    15421 tggcttatca tgatcataag ctgtataata aaatagagtt tgttctttat ttccccattt
    15481 tggaaataaa ttaagcccac catcaacaat aactttttga taagttaaag tataatcagc
    15541 cataataatt tgactttttt tagagctaga atttctcgcg atcaaaattt tatgatccat
    15601 ccaatcaaca ggtgcaagtc ctaacgcatt tacagaagct ttgacgcttt tatgtgccaa
    15661 aaatggatat tgctctaaac catttaaagt ataagtttgc tctgacttat cagaaccgcc
    15721 agcttttatt tttacattta aactcaaagt gttaccattt ttatttaaag cgtattcaaa
    15781 agtataatta cttgtctcag ttgcattagc aacaacttca aaatttgaac ttactttcaa
    15841 atcgttcaca atgatattat aaaagctttt ctttaaattc tcatcactta aatttgaatt
    15901 atctttaaca ataatctttg gtaaaactac accagaatta acaacatcaa tcactggatc
    15961 ttctgcccaa agacttccta aaaagactaa aaaaattgct acaatttttt tcattttttt
    16021 ctcctaatca tttttaactt ttgcttcatc tcttaaattc atggtaatgc ttatattttt
    16081 attttgcgga ggataagtaa taaatttacc tttttgactt tctaaaaatt cagccacttt
    16141 agcatcatat aaaggattcc cacttttttc aactgaagta tagccaaatt ttccattttc
    16201 atcaataaaa atttttacct taacagaaat tttttcacta tttggataat actgagtcca
    16261 tctttgagtg ataatacgca caactttccc taaaaattca tcataaattc caatcttttg
    16321 cgcctttgtg ctttcgcctt gcgttgaact ttcttcttga agtaaactat cattaagttg
    16381 ttttacaagt tcggaagctt gaggttttgg ggcactagaa gctcctgatt tagcacttga
    16441 ttgaattttt gtagtctttt cttcttgtat ttctttgata tttccaaaaa gctcattaaa
    16501 attacttgcc ttttggtcaa tatcttcggt tttaactgtt ttatttgtag tctgagcaaa
    16561 aagcttttct atatcaattt gctctgttgg tttttgtatt tctttaggag tgttgctctg
    16621 agtaataact tgttttgatg gttcagcaag ttcaatatct acaaaactat cttttatatc
    16681 agtatattgt atagcaggtt caacctcgct tacaagtcta aaaaaaacaa gaattactat
    16741 actaatatat attgctaaag caagtaaaaa cgaatttaaa ttactcaaac cataattttt
    16801 catgattatt cagtctgtaa agcaacttta ttaaatccta aattttttac acttcttaag
    16861 actgaaataa catcgtcata ttttaagctt ttatcagcgc gtataaaaac cggatcttcg
    16921 gtattaaatt gtgcttttct ttgagcaaga ttgtcagcaa aacttataaa atcgtatttt
    16981 tcttgattta aaaaaatttc tttttttgca ttaatactaa taattaaact cttaacagtt
    17041 ggagcgctag tatttttttg actaccttgt ggaagattaa ttttttcttc ataagtaatg
    17101 cttggagctg ttaccattaa aatcgcaagc aatacaagca taatatctac taaaggtgtg
    17161 atattaagct caggtttttc atcatcaaat ggcattttta accttattta ctcgaactta
    17221 taactttaat ctcgctatca ataatgctta aaagttcgaa agcttttctt ttaatgatga
    17281 gatgaaatgt ataagcagga attgctacta aaataccaca acctgtagca actaaagcct
    17341 cactgatttt aggagctatg atacttaaag aattttgagt tccaagccca ccaaaagttt
    17401 caagtataga aataactgtc ccaaaaagac ctataaaagg tgaagttgaa gcaataatac
    17461 taagccaagt aagtccagca gaagcgcggc gacttgctaa atttttatag atttctaaat
    17521 gatttgaagt tgtatcattg cattttctta aaatcgaatc agtacgactt aaatccttct
    17581 cacccaagag caaagtttct aaactttctt tttctttatt tctccatgta gccaaataag
    17641 tcaatctagc aaacaaaata ctaaatgcta aaataaaata taaagaaagc cataataaaa
    17701 ctatataagt aataatactt gaactattga aaaaatgaaa tatagcttca aaattcatta
    17761 atgcatcctt gcattatcaa gttttgaaaa agttgctgct aaagctgcat tatcagaact
    17821 catagattta atcaaatctt ttgcttgagc aagatttttt tcaatctcac tttcatcact
    17881 tccacaaacc caaaccgcac cctttgctaa cacgcaaatc ttatcttcat ctacctttgc
    17941 atgtccagca tcaatagcaa ttaattcatg atttaaatca gctttttcaa tatcaattac
    18001 tccagatttt aaagaagaaa ccaaagtagc gtgtccttta agtacgccaa attctccctc
    18061 gctacctggt aaagtaacag attttacttc tccttgatag attacaccca aaggcgtaac
    18121 tatctcgaaa ttaatcaaat cgttcataaa ttaacctttt aatttatccg cttttgcaat
    18181 agcttcatct atatttccaa ccatatagaa agcattttct ggtaaatgat catatttacc
    18241 ttctaaaatt cccttaaatc ctgctattgt atcttcaagg cttatatatt ttcctgggct
    18301 acctgtgaaa acttctgcaa cgaaaaatgg ttgtgataag aatttttcaa tctttcttgc
    18361 tctttcaact acaagtttat cctcttcgct aagctcatcc atacctaaaa tggcgatgat
    18421 atcttgtaaa tctttgtatt tttgaagcac tgattgaaca ccacgagcaa ctttataatg
    18481 ttcttctcca atgatatttg ggtcaagcat tcttgaagtt gagtcaagtg ggtcaactgc
    18541 aggataaata cccttttcag caatagctct atttaaaacc gttgtagcat ctaagtgagc
    18601 aaaaacagtt gctggagctg ggtcggttaa gtcatcagct ggaacgtaaa cagcttgaac
    18661 tgaagtgatt gagccttttt tagttgaagt aattctttct tggaatttac ccatttcact
    18721 tgctaaggtt ggttgataac ccacagctga tggaattctt cctaaaagtg ctgacatttc
    18781 agaacctgat tgtgaaaatc taaagatatt atcaataaac ataagcacat caagacccat
    18841 ttcatctcta aaatactcag ccattgttaa acctgttaaa gcaatacgat ttcttgcccc
    18901 tggtggttca ttcatttgtc cataacatag agcaactttg tctaaaacat tgctttcttt
    18961 catttcatta taaaggtcat ttccttcacg agttctctca cccacacctg caaatacaga
    19021 atagccacta tgcttaaatg caacattgtg aataagctcc ataataataa cagttttacc
    19081 aacacctgca ccaccaaaaa gacctacttt accacctttt gcataaggag caagtaaatc
    19141 cacaacttta atccctgttt caaaaatctc actttttgtg ctttgatctt caaaagctgg
    19201 cggatctcta tgaattgccc attttttatc aaaagaaatt tcttcacctt catcgatcaa
    19261 atctccagta acattgaaaa ttcttcctaa aactttctca ccaacaggaa cactaatagg
    19321 agcacctaaa gcctcagctt ttaagcccct taccaaacca tctgtcatat ccatagcaat
    19381 agttctaact ctattatctc ctaaatgagc tgctacttct aaaacaagtt tatgtttttt
    19441 tccttcgctt tcaaaattta caacaattgc ttcattaatt tgaggtaaat agtcgttaaa
    19501 atctacatca acaaccggac ctaatacctg tgaaataaat ccttgcatta tttatcttct
    19561 ccttaaaatt tactatttca ttgattcaac accactgata atttctataa gctcagtagt
    19621 aatggattct tgtcttgctt tattataagc taaatttagt tgtttcactc ttgcctttgc
    19681 gttattagtt gcattatcca tagcttgcat tcttgcacta tgctctgccg ccaaagaatc
    19741 gattaatgca taatacatat tatactcgaa atatgttttc attaaatctt ctaaaagctc
    19801 agttccttct ggttcaagct ctaaaagaga attatgagtc tgttcaatac tctttggttc
    19861 aactggaata agatgattaa ttttaagttc ttgggtaatc atatttttat aaccattatg
    19921 aactaaaatc acttcatctg tatttccatt taaaaaatca tctacagcag catgaattac
    19981 ttcacatgct ttctcatagt caggactaga actaagatgg aaatatttct ctaacaattc
    20041 tattttttga aaattaaaat attcaatccc agttttacct atagctctaa gacgaatatt
    20101 aatatttttt gcttcatatt cttttagcat ttcacttact gcttttaaag tcttaatatt
    20161 aaaaccaccg cataagcctt tatctgcagt gataaatatt aaatctacag ttttaatttg
    20221 ttctttttta tgaaacaaag ataaacgcac atcatcttca ttgtgaacaa ttttattgat
    20281 ctgaaatgaa atttcactca aaatttcatc gattttttgt gcataaattt ttgatctttt
    20341 agctgcttct tctgcttttt ttaacttagc agtagaaact agcttcatag catttgtagt
    20401 cttttgagtg ttatgaacac ttttaatttt tcttttaatt tcttttaaat tagacataaa
    20461 agaccttata aatgatttgc tttaaactca ttaatggctt tagctagttt ttcttccaaa
    20521 tcagaatcta aagctttttt agagcgaatt tgctcaaaaa tatctggatg ttttgcctca
    20581 ataaaaggat aaattccatc ttcaaattcc ttaattctag aaacagcaat atcatctaag
    20641 aaacctttgg ttcctgcaaa aattaaaact acttgttttt caacgctaag cggagaataa
    20701 ggtggttgtt ttaagagttc aaccattctt tgtccacgtt caagttgttt tctacttgcc
    20761 tcatctaaat cactagcaaa ttgtgcaaaa gcttgaagct ctctatattg agcaaggtca
    20821 agtcttaatg tgcctgaaac ttgttttgta gctttaattt gagcagcccc acctacacga
    20881 gatactgata aaccaacatt aattgcagga cgaattcctg agttaaataa atcagtttct
    20941 aagaaaattt gtccatctgt aattgaaata acattagttg gaatataagc agaaacatct
    21001 cctgcttgtg tttcaattat cggcaatgcc gtcaaagaac cagcacctaa ttcatcattt
    21061 agcttgcttg ctctttcaag caatcttgaa tgaaggtaaa aaacatcgcc tggataagct
    21121 tcacgacctg gaggacgacg taaaatcaaa gacatttcgc gataagctac agcatgcttg
    21181 ctcaaatcat cataaacaat taaagcatgt tttgcgttgt ctctaaaaaa ttcacccatg
    21241 gttacaccag tatatggagc taagtactgt aaagccgcag gatctgaagc accagcattt
    21301 acaacaatag tatattccat agcaccatgt tcttctagtc ttttaaccac ttgtgccact
    21361 gtactttgct tttgaccaat tgcaacatat atacagataa ctccttgacc tctttgagat
    21421 ataatagtat caacagcaac agtagtttta cctgtttgtc tatcacctat gataagctct
    21481 ctttgaccac gaccaattgg cacaagcgca tcaatagctt taattcctgt atgtaaaggc
    21541 tcatgaacac tttttctcgc cataatacct tttgcttttt cttcaacaaa acgatattca
    21601 ttagcattga tcacaccttt agcatcaatt ggctcaccta aagcatttac aacacgacca
    21661 atcaaagcct cacctactgg aactttaagt aatttcttaa gtctttttac agaagcacct
    21721 tcttttaaac cttctccttt tccaagtata acaataccta cactcgactc ttcaaggttt
    21781 aaggccattc ctttatcacc attttcaaat tctaccattt ctccagccat aatattctta
    21841 agtccatata ccttagcaac accatcagct acagaaataa tctttcctgt ttcttcaatt
    21901 tcaagattta aatcaaaatt ttcaattctt tctttgatta ttgaactgat ctcatcagct
    21961 ttaaatttca tttacttttt ctccttagat aattttcaat atatattcgt ttagcttatt
    22021 ttgaagagct ttcatagaaa aagaaagttc ataacctaa
//
LOCUS       DAEBKH010000011        20925 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.011, whole genome shotgun sequence.
ACCESSION   DAEBKH010000011 DAEBKH010000000
VERSION     DAEBKH010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20925
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.011"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(168..253)
                     /locus_tag="KIL20_000276"
     tRNA            complement(168..253)
                     /locus_tag="KIL20_000276"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(217..219),aa:Leu,seq:gag)
     gene            complement(288..626)
                     /locus_tag="KIL20_000277"
     CDS             complement(288..626)
                     /locus_tag="KIL20_000277"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HBD2720341.1"
                     /translation="MKKVLFLLLACAAVAFAAETNAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
     gene            860..2194
                     /locus_tag="KIL20_000278"
     CDS             860..2194
                     /locus_tag="KIL20_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HBD2720342.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFTSEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFMMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFAFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSISSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFEPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
     gene            2207..3547
                     /locus_tag="KIL20_000279"
     CDS             2207..3547
                     /locus_tag="KIL20_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HBD2720343.1"
                     /translation="MRTYFSKIGFVLAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFVLSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNLITTNLTSSVFFFILSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFSHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGAGIVFVSLMSLFNQLGALGYIFAFCFFLALFFAGITSAVSMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLPLGA
                     IVCSIFVGFFMNKKQIYKIFSKFISRKIFLIWLFFIRFISPIAIILVMCYQIFV"
     gene            3580..5379
                     /locus_tag="KIL20_000280"
     CDS             3580..5379
                     /locus_tag="KIL20_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HBD2720344.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFAMMDRFRAIVGKDANLQTLARGVNTVTLDTGSSELID
                     LHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIVKYGLKHEITITLMDLPSNCKGAHD
                     VPFYEKILKEILAAEIPFHSICFKDASGTSNPNKIYETIKMARKILPQDTHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTIMHALKDKDYDLGGFEEEKI
                     LKYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWKKIAEGYGKMVLGYFGKTPVAPD
                     ANIIELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEGIETSEENIFVAAACK
                     EKGIAFLKGEAKVNVRKLASMPKPMSVDENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEVLAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIISELCIKIGDTVNEGEVLAIYKN"
     gene            5392..6966
                     /gene="pckA"
                     /locus_tag="KIL20_000281"
     CDS             5392..6966
                     /gene="pckA"
                     /locus_tag="KIL20_000281"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HBD2720345.1"
                     /translation="MKKFDNLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKINQPITKELFDKLLTKAKQELSGKKIYVQ
                     DAFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     HEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     IAKCEFENFEVFNLAIPKALEGVESTLLNPINTWLDKNAYTETRDKLAHMFVQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            6976..8358
                     /gene="argH"
                     /locus_tag="KIL20_000282"
     CDS             6976..8358
                     /gene="argH"
                     /locus_tag="KIL20_000282"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HBD2720346.1"
                     /translation="MKNEMWSGRFSGASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVKSEIEQGKFVFDIKDEDIHMAIEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELLKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYATNRELSAEIL
                     GFKDIMPNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGLFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(8380..9483)
                     /gene="ychF"
                     /locus_tag="KIL20_000283"
     CDS             complement(8380..9483)
                     /gene="ychF"
                     /locus_tag="KIL20_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HBD2720347.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPEKIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVNENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(9480..10931)
                     /locus_tag="KIL20_000284"
     CDS             complement(9480..10931)
                     /locus_tag="KIL20_000284"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HBD2720348.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYEDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTRTLERFIISSEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNITCKIYDEKFLAKEKMNAFLAVNRA
                     SVHPPRLIHLSYKATNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAAMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPHLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            complement(10928..11524)
                     /locus_tag="KIL20_000285"
     CDS             complement(10928..11524)
                     /locus_tag="KIL20_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HBD2720349.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(11543..12091)
                     /gene="apt"
                     /locus_tag="KIL20_000286"
     CDS             complement(11543..12091)
                     /gene="apt"
                     /locus_tag="KIL20_000286"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HBD2720350.1"
                     /translation="MIKLTQEEQKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLKHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFVPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLMN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(12088..12420)
                     /locus_tag="KIL20_000287"
     CDS             complement(12088..12420)
                     /locus_tag="KIL20_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720351.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(12420..12857)
                     /gene="rpiB"
                     /locus_tag="KIL20_000288"
     CDS             complement(12420..12857)
                     /gene="rpiB"
                     /locus_tag="KIL20_000288"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HBD2720352.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKIDERSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            13023..13577
                     /locus_tag="KIL20_000289"
     CDS             13023..13577
                     /locus_tag="KIL20_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HBD2720353.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDIKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLVKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            13593..14381
                     /locus_tag="KIL20_000290"
     CDS             13593..14381
                     /locus_tag="KIL20_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HBD2720354.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILALKLNKFLEG
                     TNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNIL
                     SAPCSSGEEVYSLALLAAQNFIKDMYILGVDINSSVIEKAKLGKYQGRTLQRLSESEK
                     RRFFLESEDKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHESKL
                     KLMERFHRILNDKGRLYVGNADLIPETIYFKKIFSPRGVYYEKV"
     gene            14517..15245
                     /locus_tag="KIL20_000291"
     CDS             14517..15245
                     /locus_tag="KIL20_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HBD2720355.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            15267..16046
                     /gene="peb1A"
                     /locus_tag="KIL20_000292"
     CDS             15267..16046
                     /gene="peb1A"
                     /locus_tag="KIL20_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HBD2720356.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            16048..16800
                     /locus_tag="KIL20_000293"
     CDS             16048..16800
                     /locus_tag="KIL20_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HBD2720357.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            16811..17470
                     /locus_tag="KIL20_000294"
     CDS             16811..17470
                     /locus_tag="KIL20_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HBD2720358.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGIVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            17578..18507
                     /locus_tag="KIL20_000295"
     CDS             17578..18507
                     /locus_tag="KIL20_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HBD2720359.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDSGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQASGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAHERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVAPVFAEVIRRVYHNESVNSLFI"
     gene            18673..20784
                     /locus_tag="KIL20_000296"
     CDS             18673..20784
                     /locus_tag="KIL20_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HBD2720360.1"
                     /translation="MTQLSTKILWLFVATLGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPTLAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHALAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSITPEEITTLTTNIGEHTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKIANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISTIKKEISIATQSKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            20765..>20925
                     /gene="kcuS"
                     /locus_tag="KIL20_000297"
     CDS             20765..>20925
                     /gene="kcuS"
                     /locus_tag="KIL20_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HBD2720361.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     REEFFKECL"
BASE COUNT         6788 a         2810 c         3729 g         7598 t
ORIGIN      
        1 ctttttaaaa caaaaaataa aaagttagga gaaaagttag ggaaaaattt ttaaaatgga
       61 ttttaacgga aaaatttaat ttagatttta gatagtttta aagtcctatt ttatagatat
      121 tttttaagtt ttatatttat gttaatttat gtagttagca gtataaatgg tgcggttagc
      181 gagatttgaa ctcgcacacg cggagcgcac caccccctca agatggcgtg tctaccaatt
      241 ccaccataac cgcatagaaa aaagcccaaa aagggctttg ataagtttta ttgtaaaact
      301 ataaaaggat ttgcgtaaag tgctattagc gcgataacaa gagcatagat aacttgtgct
      361 tcaatcatcg ctaaagcgat aaacatagtt gtcattaatt ttggcccaag accagggttt
      421 ctagctgttc ctgcaattgt tgccgctgca gtattaccca taccgatagc accaccaagt
      481 gctgcaacgc caagacctaa gcctgctgca agaactgaaa atgctttaat ccatacatta
      541 atagcttctt gctctactgg agcattagtt tcagctgcaa aagctactgc tgcacatgct
      601 aataataaaa aaagaacttt tttcattatc ttaacctttc tataaaaaaa atttttttca
      661 atttttaaat cagttcggct tgcgtatccc tacttaagac ttaaaaataa agccgaatta
      721 taaccaaaag tatctttatt tttattgaaa tttacaaaaa ttcacatttt tgatttaaat
      781 ttgattgttt tcaataaagc ttaaaagttt ttttgcttta ataatatttt aaaataattt
      841 ttaagttaag gttgcaacat tgagttctaa attttcaaaa ataggtttca ttttagcggt
      901 agcaggttca gcagtgggct tgggtaatgc ttggaaattt ccaacactag taggtcaaag
      961 tggtggatct gcttttatct tgctttatat aattcttact ttgggtgtag gttttgtgat
     1021 atttttagct gagcttagca taggaaaaat tagtgaaaaa gatccggtta atgcctatga
     1081 aaagttagca ccttcaaata aaaaagcttg gtcttatgtt ggttttacta tggtgggggc
     1141 gattttaata gtttcttttt ataccttggt gattggctgg atagttaaat atgtgttttt
     1201 aagtatcact ggaaatttgc ctatggatct agaagtaagt aaagcacagt ttggattttt
     1261 tacaagtgag gattttttaa gtcagtttat ttgttttact ttggtttttt tatgtgtttt
     1321 ttatattgtt tctaaaggtg ttaagaatgg gattgaaaag ttaaatgttt ggatgatgcc
     1381 ttcattattt attttactaa tcttgatgct tgtttatgct attagtaaag atggttttat
     1441 gatggcggtt aaatttcttt ttgtgcctga tttttccaaa atcaacactt caaatgttct
     1501 tgaagcttta ggacttgcct tttttagtct ttctttgggt gttgggacga ttattactta
     1561 ttctgctagt ctgcctgata aaactaattt tattaccagt actttaaata ttatttttat
     1621 caatctttta gttggtctat taatgggttt ggttgttttc acttttatct ttgaatttgg
     1681 ttacaatcct aatcagcaag gaccagggct tgtttttatt tccttggcta ctttatttga
     1741 aaaaattggg gtgatcggtt gtatttttgg agcagcgttt tttatttctt taatctttgc
     1801 tggtattact tcagctgttt caatgataga gccttttgct ttttatctta ttaatacttt
     1861 tggtatgagc cgtaaaaaag ctttgatttt aataggaatt gttgtttata ttttaggaat
     1921 gttgtgtatt ttatcttctt taaaaagtac tcagtttgga ttttttggaa tgagtttttt
     1981 tgatttgctt gatagtattt caagtaaggt tattatgcct ttaggtggaa ttttggcagc
     2041 tatttttgtg ggatttgtga tgaaaaaaga agctttaaaa attttatttg aaccttatat
     2101 gaggggtata ttttttgaac tttggtatgt gtttttgaga tttatttccc ctttggctgt
     2161 tgttatagtt atgatagccg cttttttaaa gtgagtttga aaaataatga gaacatattt
     2221 ttcaaaaatc ggttttgtat tggctgttgc tggtggagct gttggtttag gtaatgcttg
     2281 gaaattccca actttaagcg cagaaaatgg cggttttgtt tttgtgcttt tatatttgtt
     2341 ttttacttta accataggat ttagtatttt tttggctgaa gtggctatgg gacgtttaag
     2401 taaaagtgat cttgcaaatg cttattcaaa tcttgccata aaatatggca atagatggcg
     2461 atatggcggc gtttttatgt taggtggtat ttttgttctc tctttttatc tagttattat
     2521 gggatgggtt ttaaaatata ctgtagttag tctttattat cttcctaaaa ccttagatga
     2581 agcagcaagt aattttcaga atttaattac tacaaatttg acaagttctg tttttttctt
     2641 cattttatct ttttttctta ctttattaat agtatctaaa ggtttaatca aagggattga
     2701 aaaattaaac gttgttataa tgcctagctt atttttaatg cttgttttta tgttgtttta
     2761 ttgtatggga tttaagcaag gttttgcaaa tgctttttct tatttatttt atcctgattt
     2821 ttcacatttt aaatttagct ctattgccga agctttaggg cttgcatttt ttaccttatg
     2881 cttgggaata ggttgtatag ttacatattc atcagccttg gataaaaaaa caaattttat
     2941 aaaaagttca gtgtatattg ttttgattaa cttattgatt tcttttatca tgggacttat
     3001 tgtttttact tttatctttg aatttggagc cgatccgcat actcaaggag caggaattgt
     3061 ttttgtatcc ttgatgagtt tgtttaatca acttggagct ttaggctata tttttgcatt
     3121 ttgttttttc ttagcacttt tttttgctgg tattacttca gctgtttcaa tgatagagcc
     3181 tttaactttt tatatgatta ataactatca aatttctcgt gttaaagctc tatttttaat
     3241 aggtttattt gtttttgttt ttggaatttg ttgtatcttg tcattaaatt taaatttttt
     3301 ttctatgttt agtttttttg gcaaagattt ttttacttta ttagataaat taacttcaaa
     3361 ttttttactt ccacttggtg ctatagtatg ctctatattt gtaggttttt ttatgaataa
     3421 aaaacaaatt tataaaattt tttctaaatt tataagtaga aaaattttct taatttggtt
     3481 gttttttatt cgttttatat cgcctatagc aataattttg gtaatgtgtt atcaaatttt
     3541 tgtataataa tgaaaaaata ttttttttaa ggaaaaataa tggctaaaaa attcatcgat
     3601 gtaatggata caagctttag agatggtttt cagtccgttt atggggctag ggttttaatg
     3661 gatgattttt ttcctgcagt agaagcagca aaagaagcag gcattacaca ttttgaattt
     3721 ggcggtggtg ctagatttca aagcttgtat ttttatctta atgaagatgc ttttgccatg
     3781 atggatagat ttagagctat tgtaggaaaa gatgccaatc ttcaaacttt agcaagaggg
     3841 gtcaataccg ttactttaga cactggaagt agtgagctta ttgatttgca tgcaaaactt
     3901 tttgcaaaac acggtactac aacgataaga aattttgatg cccttaatga tgtaaataat
     3961 ttaaaattta gtggtgaatg tatagtaaaa tatgggttaa agcatgaaat tactatcact
     4021 ttaatggatt taccgtcaaa ttgtaaaggt gcccatgatg tgccttttta tgaaaaaatt
     4081 ttaaaagaaa ttttagcagc agaaattcct tttcatagta tttgtttcaa agatgcaagt
     4141 ggaacttcta atccaaataa aatttatgaa accattaaaa tggctagaaa aattttacct
     4201 caagatacac acattaggct tcatacgcat gaaactgcag gagtgagtat agcttgctat
     4261 cttgcagcac ttgaagcagg tgttgatggt atcgatttgg ctgcagctcc tgtaagtggt
     4321 ggaacttctc agcctgatat tttaaccata atgcatgcct taaaagataa agattatgat
     4381 ttaggtggat ttgaagaaga aaaaattcta aaatacgaag aagttttaaa agattgttta
     4441 aaagagtatt ttttaccccc tgaagctact atggtaaatc cacttattcc tttttctcct
     4501 atgccaggag gagctttaac ggcaaataca caaatgatga gggataataa tattttagat
     4561 aaatttccac aggtcattca tgctatgaga gaagttgtag aaaaaggtgg atttggtact
     4621 tcggttactc cagtttctca attttatttt caacaagcat ttaataatgt tatgtttggg
     4681 ccttggaaaa aaatcgcaga aggttatgga aaaatggtgc ttggttattt tggaaaaact
     4741 ccagttgcac ccgatgcaaa cattattgag cttgcttcaa aacaacttaa tttagaacct
     4801 actacagagc ttgctataaa tatagctgat aaagatgaga gtaaaagtat agcttatacc
     4861 aaaaccttgc ttgaaaaaga gggtatagaa acgagtgaag aaaatatatt tgttgcagca
     4921 gcttgtaaag aaaaaggtat agcattttta aaaggagagg caaaggtaaa tgtacgcaaa
     4981 ttagccagta tgccaaaacc tatgagtgta gatgaaaaca aatttaccgt agctgtaaat
     5041 ggtaataaat atcatgtaga agtaagttat ggttttgata aagatgttaa tgttaaaagt
     5101 gtgaaaaaag tagaagaaaa taaaaatatt atttcttcaa attcgacaag ttctgtcgat
     5161 gctgaaaatg aagttttagc gggtatttcg ggtaatgttt ttaaaattta tgttaacgaa
     5221 ggcgaagaag taaaatcagg tcaagctatc atggttttag aagcaatgaa aatggagatt
     5281 gaggttaatg ctccaaaaga tggaattatt tcagagcttt gtattaaaat aggcgatact
     5341 gttaatgaag gcgaagtatt agctatttac aagaattaaa gtgagagaaa aatgaaaaaa
     5401 tttgataatt taggtttaga taatataaag gaaatttttc ataatttaag ttatgatgaa
     5461 ttaaatgctc atgaaaaagc aaataatgaa ggtttaagca cggataatga tactttttgt
     5521 gtggatacgg gaatttttac aggtagaagt cctaaagata aatattttgt aaaacaagat
     5581 ccatctagta aatatatagc ttgggggaag ataaaccagc ctattacaaa agaattattt
     5641 gataaacttt taactaaagc aaagcaagag ttaagtggaa agaaaattta tgttcaagat
     5701 gctttttgcg gtgcttcttt gcaaagtcgc aaagcagtaa gatttgttac tgaaattgca
     5761 tggcaagcgc attttgttaa aaatatgttt attcgcccaa gtcaagagga acttgagaat
     5821 tttaaagcag attttattgt ttataatgct tgcaaatgta ttaatgaaga ttataaacaa
     5881 gatggtttaa attcagaggt ttttgtgatc tttaatgttg aagaaaatat agcggttatt
     5941 ggtggaactt ggtatggtgg agaaatgaaa aaaggtattt tttctatgat gaattattgg
     6001 ttgccactag aaaataaact ttctatgcat tgtagtgcaa atgtcggaga aaaagacgat
     6061 gtggcacttt tctttggact tagcggtaca ggaaaaacta cgctttcaac cgatccaaaa
     6121 agaagactca taggtgatga tgagcatggc tgggatgatg aaggtgtgtt taattttgag
     6181 ggcggttgtt atgcaaaaac aatcaatctt gatcctgagc atgagcctga aatttatggc
     6241 gcgattaaaa gaaatgcact tttagaaaat gtagttttaa gagctgataa gagtgttgat
     6301 tatgctgatg cttcaaaaac agaaaatacg agagtttctt atcctataga gcatattgaa
     6361 aatcatgagc ctagcttaaa agcagggcat ccaaaaaata ttatattttt aagtgcagat
     6421 gcttttggaa ttttgcctcc ggtgagtaaa ttaagcaaag aacaggctat gtattatttt
     6481 ttaagcggtt atacagcaaa agtagctgga actgagcgtg gtataacaga gcctcaagca
     6541 actttttcag cttgctttgg agaacctttt atgcctttac atccaacggt ttatgcgaga
     6601 ttgcttggtg aaaagattga aaaacatgaa gttaatgttt atcttgttaa tacgggttgg
     6661 agcggtggaa gttacggtgt aggtaaaaga atgagtatta aggctactag ggcttgcatt
     6721 aatgctattt tagatgggag tattgcaaaa tgcgaatttg aaaattttga agtgtttaat
     6781 ttagctattc caaaagcttt agaaggtgta gaaagcacgc ttttaaatcc tataaatact
     6841 tggttagata aaaatgccta tactgaaaca agagataagc tagcacatat gtttgtgcaa
     6901 aatttcaaac gctatgaaga tgtcaaagaa ggtattgaat ttagcaaatt tggaccaaaa
     6961 atttaaggta tttaaatgaa aaatgaaatg tggtcaggac gctttagcgg tgcaagcgat
     7021 gagcttttaa aagaatttaa tgcgagttta aatgtagata aaactttgtt taatgaagat
     7081 atacaaggat ctatagcgca tgctacaatg cttgaaagtt gtggtatttt aaaaaaagaa
     7141 gaattagatg ctattataaa aggcttagaa caagttaaaa gtgaaataga gcaaggtaaa
     7201 tttgtttttg atatcaaaga tgaagatata catatggcca tagaaaagcg tttaagcgag
     7261 attataggca gtgaaattgg tggaagacta catactgcaa gaagtagaaa tgaccaagtg
     7321 gctactgatt ttaaactttt tgtaaaaaaa tctcacatag aacttttaaa acttttaaaa
     7381 gaattgattc aaaccatgct cgaacatgct aaagtgcata aaaaaactat tatgccaagt
     7441 tttacacatt tacaacacgc tcagcctgtg agtttttctt tttatatctt agcttatgct
     7501 tttatgttaa tgcgagatat taagcgttta caaaatagcc tagaacttgc agacttttcg
     7561 ccacttggtt cttgtgcatg tgcaggaaca agctatgcta ccaatcgtga gttgagtgct
     7621 gaaattttag gatttaaaga tattatgcca aatgctatgg atggagtgag tgatagggat
     7681 tttgctcttg atttgcttta tgatatagca gttattttta cacacacttc aagactttgt
     7741 gaggaaatga ttttattttc aagctcagaa ttttctttta taaccataag tgatagtttt
     7801 tcaacgggaa gttctattat gcctcagaaa aaaaatcccg atgtttgtga gcttatacgt
     7861 ggaaaaacag ggcgtgttta tggaaatttg atttctctct taactataat gaaagcttta
     7921 cctttagctt ataataaaga tatgcaagaa gataaagagg ggctttttga tagtgtaaaa
     7981 acggctaaag atagcttaat tatcttaaat gcaatgttaa aagaaataca aatcaacaaa
     8041 gaaaatatgc ttaatgcttg taaaaaaggt catttgttgg ctaccgattt ggcagattat
     8101 ttggtgcgtg aaaaaaatat tccttttaga aaagcacatt ttatagtggg aaatgttgtt
     8161 gcacaagctg aagcacaagg cattgatata agtgaaatta aagatctttc aaaaatagat
     8221 cctgtatttg atgaaaaagc tatggaactt ttaaattttg aattttcttt aaattctaag
     8281 caaagtgaag gctcaagttc tattgcaagc gtagaaaagc aaattcaaat tttggaaggt
     8341 tttattcaaa atttataaat attgtttagg ctattttgcc taaacattga atctaaaatg
     8401 cattacatcg ccatctaaaa cgatatagtc ttttccttca aggcgtagct ttcctgcttc
     8461 tttggcgcca ttttcgcctt tgtattggat ataatcttca taggaaataa cttcagcttt
     8521 tatgaaacct ttttcaaagt cattgtgaat tacacttgct gcttttggtg ctttccaacc
     8581 ttttttgatt gtccaagaac gcacttcaac tacaccagcg gtaaaataac tgatcagtcc
     8641 aagcttagca aaagcagtgc gtatgatttg atcaagaccg ctttcgttaa ctcctagaga
     8701 acttaaaaat tcatgacttt cttcatcact taatcctact aattcttctt cgatttttgc
     8761 acaaagcttg ataacttcat gatcattttt tttagcatat tcttttaaag cttttacata
     8821 atcattatct tcactaatac cattttcatt aacatttgca ccataaatca cttctttagc
     8881 agaaagcagt cttaattctt tgattaaggc ttgataaatt tcactttctt tttcagggta
     8941 agaacttgca gctaagcctt tgtttaaatg atcaagtaag gaatttgcaa gttcgagact
     9001 ttctttagca cccttttgat tggctttggc ttctttggtg agtttttcta tttttttact
     9061 aagttgctca atatctgcta aaataagctc tgtattgata atttctacat cacgtaaagg
     9121 atcaactcca ccttcaacat gggtgatatt ttcttcatca aaacaacgca ctatgtgtaa
     9181 aataacctca gtttcacgta tatttgaaag aaatttattt cccaagcctt cgcctttact
     9241 tgcaccttta acaagtccag cgatatctac aaattctatt aaagaatgca taattttttc
     9301 aggttttacg attttggcaa gttcattaag tcttaaatca ggaacttcaa ccatggcttt
     9361 gttaggctct atggtgcaga aaggatagtt tgcgctttgg gcattttgtg ctttagttaa
     9421 agcattaaaa gtcgttgatt tgccaacatt tggaagtcct actataccta cacttaaact
     9481 catttagctt tccttaaaat ttgaattaaa taattaacgc acattctaac tccagctcca
     9541 cctgcgccaa aactagaata tccccaagat ttttctgtat aagcaggtcc tgctatgtca
     9601 agatgtagcc atttgtcttt atattcttta cgaataaatt tatctaaaaa taatcctgcg
     9661 gtaattgcac ctccgtagcg actagaggca gtgttgctaa catcagcaat atttgatttt
     9721 ataagttctc ttaagtgagg gttgaaatgt aagattgtgg tatattctcc actttttttg
     9781 gagcttagat aaaaatcatt ttgcaattct tcattatttc ccataatagc gcttgtaaat
     9841 tctccaagtc ctacaacgca agctccagta agagttgcca tatcgataag taaatcaggt
     9901 tttaaatcct gtgcaaaaga aagacaatcg gctaaaacca agcgtccttc agcatctgta
     9961 tttcttacct ctatgcttac accttcacga ctgattaaca catcatcagg cttataagca
    10021 ttgccgccta tcatattttc agttgcacct aaaatgcaat gcacttctaa atctaaagca
    10081 agttcagcta cggcttttat gattcccatt gctgctgctg caccgctttt atcagctttc
    10141 attgtaagca taaaatcagc tggttttaag cttaatccac cgctatcgta agttaagcct
    10201 tttccaacaa atacaacacg tttttttgca tttgtggctt tataacttag atgaatgagg
    10261 cgtggaggat gtactgaggc gcgatttact gctaaaaagg cattcatttt ttctttagct
    10321 aaaaattttt catcataaat tttacaagtg atgtttttat tttctttagc taaattttgt
    10381 gcatcttctg ccatttttaa aggggtgtaa atttcaggaa tttcattgac tatatttttg
    10441 gtaaaatttg tagcattggc taaaatttct ccacgctcta aacctatctt agcttcatct
    10501 ttattaaatt ttttaccatt taattcttca cttgaaataa taaatctttc taaagttctt
    10561 gtttttttct cgcttttata tttgtcaaat ttataagctc caaaaagtac gccttcaact
    10621 aaagatgcaa aacttctaac tacacaatct cctattatgc taggaagttt tacgctttta
    10681 atattaagtt tctcaagagt tttatatgct gtgcaaagac ttaatcttat atcctcataa
    10741 gcaagacttt taagctctaa ataaagcttt ttattgttta agtctaataa tgcaccttca
    10801 cctttgtaat tattaagttt aaaaaaatct ttttctttgt taaaaatttt taaattttta
    10861 tcctgtataa aaacaagttc aaagtctgct tttatagcat ctagtttttt atcgtttaat
    10921 tcaaatttca tgattttttc cttttatctt taagtatagc tttttccatt tgtttaaaac
    10981 caaataataa aagggataaa aaagctataa taataatggc tgcataatac caatgttctt
    11041 cagcccaagt caccatcttc caaatttgtt ctccaaaata ccaagctaaa agtatagtga
    11101 ttgatgccca aacccaagca ctaaaaagat tgataatagc aaattttttt gcactataac
    11161 gcgtgattcc tatactcata ggtataatgg ttctaaagcc atacatatag cgttgtataa
    11221 aaataatagg ccaaccaaaa cgttgtaaaa gtaggtgtgc tactgcaaat ttacgccttt
    11281 gagtttttaa ttttttttgt atgtagcgtt tattatatct tcctatatag aaataaattt
    11341 gatcgcctac aaaaccgcca agacctgcta taaatataac aaagcctaaa tttacatgtc
    11401 cttgatgggc aaaaatacct gctaaaatta aagctaactc tccttctaaa atacaccata
    11461 aaaaaataat aatataagct agatctttgt attggtaaag taaatttttt aaaaattctt
    11521 ccatttgtac ctttctatag ttttaaattt ctaaaacact ataaactgaa gtaagttttt
    11581 caagtttatt tgctccattt aaatctttaa gattcattaa aaaacaagct tcaacacatt
    11641 ttgctccagc tttttgaatg agttcatatg aagctatagc tgttccgcca gttgctatta
    11701 aatcatctac aagtaaaact cttgcatttt gaatattttt aaatgcatct ttatgaagtt
    11761 ctactttatc gctgccatat tcaagatcgt attcgcagct aaaggtttca aaagggagtt
    11821 ttccaggttt tctaataggc acaaaaggaa gattaagttt tgcacaaatc atagatgcaa
    11881 agataaatcc tctgctttct gttcctgcta tgaagtctag attgtaatct ttgtagcgtt
    11941 cttttaaatg tttaagtaga aaatttaaag cctctttgtt atttagtaga gtggtaatat
    12001 ctctaaagat aattcctttt tttggaaaat caggaataat tctaatgcta tcaagcaggt
    12061 atttttgttc ttcttgtgtt agttttatca taataatgcc tcgatttttg cttctaattc
    12121 tttaattctt tgtcttaatt tgtcattttc caaacgatat tgagaatttc tagttcttaa
    12181 agatgtaagg tctgctttga ttttattaag ttcttctgtg agtatatcta tatttccaag
    12241 acttctttga agttgaattt gtagttttct aatgacaatc tcagtatcat caagattgtt
    12301 tttgataaaa tcttttgatg ttttttcttt attaagtaga gttttatagt aaaacaacat
    12361 tacaataaga tagatagttg cacaaatcaa tatagttaaa acaagccagt ttgtaaacat
    12421 tatattttta cctcaatttt ttgaattctt tgcatatgtc tcccttcttc aaaaggagtt
    12481 tgaatgaatt tttctataat atctatagct aattcaaccc cgattaatct tccgcctaat
    12541 gccaaaacat tggcatcatt atgccttctt gcaagttctg cacttaagct ttcatgacat
    12601 aatgcacaac gaatgttttt atgacgattt gctgcaatag aaattccaat tccacttcca
    12661 caaataagaa tgccaaagct tcgttcgtct attttttcgg caagtaaatg tgcataatca
    12721 ggataatcgc agcttgcgca agtgtttgtt cctaaatcgt taaaaattat atttttttct
    12781 tttaaaaata cgcaaatttt ttcttttaat tcaaaaccag catgatcact agcaatataa
    12841 attttttccc taagcattgg tttcctacat tactatataa aataagataa aaacctaatc
    12901 ttatcatatt aaatcataaa aacagctttt ctttttttaa aaataagctt tatttttctt
    12961 tatatatgtt agaattacgt gacaagaaaa ataaaatttc aataaattaa ggggagaaga
    13021 aaatgaagct catactcata ggatcttcaa caggtggtcc taatcagctt aaatttcttt
    13081 taaaggatat tgatataaaa aatacttgtg tagttatagc tcaacacatg agtgccagtt
    13141 ttattccatc ttttgtgggg caatttaata aagaagcttt tagtgaagtg tgcttattga
    13201 atgataaaga gatattaagc aataaaattt atatttgccc taaaaatact attttatctg
    13261 gaaatttaaa tattgtagcc gcttggcaag atgtggcttc aagctttaaa ccgagtgtgg
    13321 atttactttt tcattccgct gtttctttgg taaaaacaaa taaaatactt gctattattt
    13381 taacgggcat gggagatgat ggtgcaaaag gtttatttga gctttataaa acaggagtta
    13441 gatgtttatg cgagaatgaa gcagatagtg tcgtttatgg tatgccaaaa agagcaaaag
    13501 atatgaatcc gcatttaaaa cctatgagct taaaagaaat taaaaaagaa attgtaaatt
    13561 ttattgatca ggattaataa aaggaaaatt gcatggaaaa aaaaataact cctagcgaat
    13621 tggaacttaa tgaatttata aaaattatca acgaaatgag tggtattgat ttaaccgata
    13681 aaaaaaatat actagcttta aagttgaata aatttcttga aggaactaat actaaaaatt
    13741 tttccgaatt tttgggaaaa ttaaaaagca atagacaact taaacaagaa actttagatt
    13801 ttgtaaccat aggtgaaact tattttttaa gagaattggc tcaattgaaa gaaataattt
    13861 attatgccaa aagcttagaa aagagagtaa atatcctaag cgccccttgt tcaagtggag
    13921 aagaagtata ttctttggca ttattggctg cacagaattt tattaaagat atgtatattt
    13981 taggcgttga tattaattca agtgtgattg aaaaagcaaa acttggaaaa tatcaaggaa
    14041 gaactttaca gcgattgagc gagagtgaaa aaagaaggtt ttttttagaa agcgaagata
    14101 aattttatac tattaataaa aatgagcttt gtacttgtaa atttgaactt tgcaatgttt
    14161 ttgaagaaaa attttcaaga ttgggaaaat ttgatattat agcttctaga aatatgatta
    14221 tttattttga tcatgaatca aaactaaaac ttatggagag gtttcataga attttaaatg
    14281 ataaaggaag gctttatgtt ggcaatgctg atttaattcc agagactatt tattttaaaa
    14341 agattttctc tccaagaggt gtttactatg aaaaagtata aattctaaaa attactaaaa
    14401 gttacacttt agaaatttat tagtaaaaat aagttacatt ttgaagtagt tttctttatt
    14461 taatgataaa ataatttcaa ttaattttat atttagctaa aaataaagga aaaaacttga
    14521 ttgaattaaa aaatgtaaac aaatactacg gaactcatca tgttctaaag aatattaatc
    14581 tttctgttaa agaaggtgag aagcttgtta ttataggtcc aagtggaagt ggaaaaagta
    14641 caactatccg ttgcatgaat gggcttgaag aagttagttc aggagaggtc gtagttaaca
    14701 atcttgtttt aaatcataaa aataaaattg aaatttgccg aaaatattgt gcaatggttt
    14761 ttcagcattt taatttatat ccacatatga cggttttgca aaatttgacc ttagctccaa
    14821 tgaaacttca aaaaaaatct aaaaaagaag ctgaagaaac agcttttaag tatttaaaag
    14881 ttgtaggttt gctggataaa gcaaatgttt atccagcaac cctttcaggt ggacaacaac
    14941 aacgcgttgc tatagcaaga tcactttgta ctaaaaaacc ctatatttta tttgatgaac
    15001 ctacttcagc ccttgatcca gaaaccatac aagaggtttt agatgtaatg aaagaaattt
    15061 cacatcaaag caatactacc atggtggttg ttacacacga aatgggtttt gcaaaagaag
    15121 tagcagatag gattattttt atggaagatg gtgctattgt ggaagaaaat attcctagtg
    15181 aatttttctc aaatccaaaa actgaaagag cgcgactctt tttagggaaa attcttaaaa
    15241 attaaccaaa attgaaagga gaaaaaatgg tttttagaaa atctttgtta aagttggcag
    15301 tttttgctct aggtgcttgt gttgcattta gcaatgctaa tgcagcagaa ggtaaacttg
    15361 agtctattaa atctaaagga caattaatag ttggtgttaa aaatgatgtt ccgcattatg
    15421 ctttacttga tcaagcaaca ggtgaaatta aaggtttcga agtagatgtt gccaaattgc
    15481 tagctaaaag tatattgggt gatgataaaa aaataaaact agttgcagtt aatgctaaaa
    15541 caagaggccc tttgcttgat aatggtagtg tagatgcggt gatagcaact tttactatta
    15601 ctccagagag aaaaagaatt tataatttct cagagcctta ttatcaagat gctatagggc
    15661 ttttggtttt aaaagaaaaa aaatataaat ctttagctga tatgaaaggt gcaaatattg
    15721 gagtggctca agctgcaact acaaaaaaag ctataggtga agctgctaaa aaaattggca
    15781 ttgatgttaa atttagtgaa tttcctgatt atccaagtat aaaagctgct ttagatgcta
    15841 aaagagttga tgcgttttct gtagacaaat caatattgtt aggttatgtg gatgataaaa
    15901 gtgaaatttt gccagatagt tttgaaccac aaagttatgg tattgtaacc aaaaaagatg
    15961 atccagcttt tgcaaaatat gttgatgatt ttgtaaaaga acataaaaat gaaattgatg
    16021 ctttagcgaa aaaatggggt ttataatatg aatgaaagtg taggttttgt tgaacattta
    16081 agacaaattc ttacttcttg gggtttatat gatgaaaata gtataagccc ttttgcggta
    16141 tggaaatttt tagatgcttt ggataataaa gatgctttta ttaatggttt tatttatact
    16201 ttagaagtaa gcattcttgc tttgcttata gctacaattt ttggaactat aggtggagtt
    16261 atggctacaa gtagatttaa aattatcaga gcctacacta gaatttacgt agagcttttt
    16321 caaaatgttc ctttggtaat acaaattttc tttttatttt atgccttgcc tgttttaggt
    16381 ataaggcttg atatatttac tattggtgta ttgggtgttg gggcttatca cggagcttat
    16441 gtaagcgagg tggttagaag tggaattttg gctgtgccaa gaggtcagtt tgaagcttct
    16501 gcttctcaag ggtttactta tattcaacaa atgcgttata ttatagtacc tcaaactatt
    16561 agaattattt taccaccgat gacaaatcaa atggtaaatt taatcaaaaa tacctctgta
    16621 ttgcttattg taggtggagc tgagttaatg cattctgctg atagttatgc agctgattat
    16681 ggaaattatg cgccagctta tatatttgca gcggttttat attttataat ttgctatcct
    16741 ttggcttatt ttgcaaaggc ttatgaaaat aaattaaaaa aagcacattt aacgagataa
    16801 agggttgtta atggaaaatg tttttaatgc acaaaatatt gaatttttaa tgcaaggttt
    16861 atttctgaca ttaaaaatag ccttggcaac ttgtattatt tcgattgttt ttggaacttt
    16921 tttagccata actaaaaatt atggagatag attaagtaaa tttttagcag cttgctatat
    16981 agatattttt agaaatactc ctttattact atggatgctc gcagcttgtt ttgttttgcc
    17041 tgtatttttt ggacaatttc ctcaagcttt ttggggtact ataggatttt cactttacac
    17101 gagttcggtt atggctgaaa ttattagagg cggattaaat tctataccaa aaggtcagtt
    17161 tgaagcagct tattctcaag gttttggtaa attttttact cttttttata ttattttacc
    17221 acaaactttt agaaaaataa tacctgcatt attatctcaa attgtaacca ctgtaaagga
    17281 tacagcttat ttagcaggtc taggtatagc tgaacttact tataattcta aaactatatt
    17341 ggctaaacta acaagttttg aagaaatttt agcgatgata ggtattgttg cgggaattta
    17401 ttttataata tgtttttcac tttctatgtt ggtaagatat tatgctaaaa agacagctta
    17461 tatttcttaa aaaagcttat atttttatat aagcttttta aatttacagc agtttttaac
    17521 atttttttta ttaaaatctt ttgtataaat tcataatttt attgattaag gttttttatg
    17581 cgaggttata aaattttttc aggctcagct aatgtggaat ttgcaagaca agtttctaag
    17641 tatctttccc tacctttaag cgattctgga gtaaaacgtt ttagtgatgg agagattagt
    17701 gttcaaattg atgagagtgt acgcggaaag gatgttttta ttattcaaag tacttgtgct
    17761 cctacaaacg ataatttaat ggaactttta attcttacag atgctttacg tcgctcaagt
    17821 gcaaattcaa ttacggctat tataccatat tttggctatg cgagacaaga tagaaaagca
    17881 aatcctagag taccaattac tgctaaactt gtggctaatt tgattcaagc atctgggatt
    17941 gatcgtgtag ctacgataga tttgcatgca ggccaaattc agggtttttt tgatattcca
    18001 gtagataatc tttatggaag tatagttttt aatgattata ttaaagccaa acattttaaa
    18061 aatgctatta taggaagtcc ggatataggt ggtgtcgcaa gagctaggag tgttgcaaag
    18121 catttaggac ttgatatagt tatagttgat aagcgtcgcg aaaaagccaa tgaaagtgaa
    18181 gtaatgaata ttattggaga tgtaaaagat aaagaagtta tcttagtgga tgatattatt
    18241 gatactgctg gcactatagt taaagctgca gaagctttaa aagaaaaagg tgcaaaatct
    18301 gttatggctt gctgtactca tgcagtttta agtggaaaag cccacgagag aatagcaagc
    18361 ggagttttag atgagcttgt ggtaacagat actatacctt taaaagagca attaccaaat
    18421 attaaagtat taagcgttgc acctgttttt gctgaagtaa tacgtcgtgt ttatcataac
    18481 gaaagtgtaa attctctttt tatttagatt aaaaaagctt aaagattatt tttaagcttt
    18541 tcgtttttat gctacttaaa gaaacaaaaa acatatattt ttttaaaatg tgaaaaaact
    18601 aaacatcttt ctacataatt taatttataa atctgctatt ctttgaaaat attttatttt
    18661 cttaggagaa atatgactca gttaagtact aaaattttat ggttatttgt tgcaacttta
    18721 ggcgctattt gttttggtta tttagcttta caaaatggcg aaagtgtatc agcgatttat
    18781 ttggtggttg ctgctgtatg tatttatatg ataggatata gattttatgg gcgttttgta
    18841 gcttataagg ttttagaact tgataaaaat cgtgcaacac cagcacttgt agaaaatgat
    18901 ggacgtgatt ttgtgcctac aaataaagct gtattatttg gacatcattt tgctgctatt
    18961 gcaggagcag gtccattggt aggacctatc ttggctgctc aaatgggata tttgccttct
    19021 atgctttgga ttttagtagg aggagtttta gcaggtgctg tacatgattt tgttgttctt
    19081 tttatatcta ctcgcagaaa aggtagaagt cttggcgaga tgattaagga tgagatgggt
    19141 aaatttacag gtggagttgc tatggtggcg atttttggca ttatgcttat tattattgcc
    19201 attttagcta tggtggttgt aaaagcttta gcagaatctc catggggttt atttactatc
    19261 gcaatgacta ttcctatagc aatatttatg ggaatttata tgcgttttat ccgtccaggt
    19321 agagtagggg aggcttctat aataggtttt gtgcttttaa ttttggctat tcattatggt
    19381 agcgttatag ctgctgatcc ttattgggct aaaatattta ctttagaagc tccaactttg
    19441 gcaattgtta tgatggctta tggttttatt gcttctgttt tacctgtgtg gtttttactt
    19501 gctccaagag attatctttc aacttttttg aaaatcggtg ttattgtggt aatggctgta
    19561 gctattgttt tggttgctcc tgatttacaa atgccaaaag caaatactca gtattttgat
    19621 ggaacaggtc cagtatttgc aggtggagtg tttccatttt tatttattac cattgcttgt
    19681 ggtgcgatca gtggttttca tgctttgatt tctagtggaa ctactcctaa aatgcttgaa
    19741 aacgaaactc atgctttggc tgttggatat ggctctatgc ttgctgagag tgctgtggcg
    19801 attatggctt taatttgtgc ttgtatttta catccgggtc tttattttgc tataaattca
    19861 agctctgctt tgataggaac agatgttgta aatgtagcac aaaccatttc aagttgggga
    19921 tttagtatta ctcctgaaga aattactact ttaaccacaa atataggaga gcatactata
    19981 ctttcaagga caggtggagc tccaactttt gctataggtg tagctttgat cttgcatgaa
    20041 ctttttggcg gcgtggattt gatggctttt tggtatcatt ttgctatatt gtttgaagct
    20101 ttatttattt taacagcggt ggatgctggg acaagggctt gtcgttttat ggtgcaagat
    20161 atattgggta atgtttataa acctttagga gatattcata attatccagc tggacttttg
    20221 gctacggctt taagtgttgc aggttgggga tattttcttt atcaaggtgc cattgatcct
    20281 aagggaggaa tttatacgct ttggcctctt tttggcgtga gtaatcaaat gcttgcgggt
    20341 atggctttac ttcttgctac aactatactt gtaaaaatgg gcaaggcaag atatacttgg
    20401 gttactttag tacctgcggt atttgtctta gtggcaactc tgtatggagg aattcaaaaa
    20461 attatgcctt atgaggaagg caataaaata gcaaatgcgg taagtcatgt agccgccgtt
    20521 agcatacaaa gtcaaaaaat taaagattta gaatttaaat taaataatac taaagatgaa
    20581 aaagaaattt ctacaattaa aaaagaaatt tcaatagcca ctcaaagtaa agttggaaat
    20641 ttgcttaatg caattctttg tgtgttcttt atgatagcta ccttgcttgt tataatttct
    20701 tgcataggaa tttgtttagg taaaattaaa attcctctta aagaaactaa gtatattaag
    20761 attgatgaat ttcaaaaaat ttaagtatta ttatgaaaaa gccgaaaggt tttttcatcc
    20821 cttggtggga ctttctagtt atgataagta tttagaacac atgaaacaaa aacatccagg
    20881 aaaaattcca aaaaccagag aggaattttt caaagaatgt ctaga
//
LOCUS       DAEBKH010000012        20922 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.012, whole genome shotgun sequence.
ACCESSION   DAEBKH010000012 DAEBKH010000000
VERSION     DAEBKH010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20922
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.012"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..459)
                     /locus_tag="KIL20_000298"
     CDS             complement(<1..459)
                     /locus_tag="KIL20_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HBD2720362.1"
                     /translation="MYRYLLFVLAAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLTLANNLDKQAELNNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDL"
     gene            complement(432..806)
                     /locus_tag="KIL20_000299"
     CDS             complement(432..806)
                     /locus_tag="KIL20_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HBD2720363.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVEFEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLF"
     gene            complement(796..1497)
                     /locus_tag="KIL20_000300"
     CDS             complement(796..1497)
                     /locus_tag="KIL20_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HBD2720364.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILADFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIKLIEKNLKSNQIQGDIFHDDFNQFQSIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLTKANSMLKPNGTLYFCYEALALDE
                     ICFILKDIKIKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            complement(1503..1652)
                     /locus_tag="KIL20_000301"
     CDS             complement(1503..1652)
                     /locus_tag="KIL20_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720365.1"
                     /translation="MIKIAFFITFVISFLTAQSPVNFKEDNNITKEQNIFKEQPPKRI
                     KIPTH"
     gene            complement(1670..1746)
                     /locus_tag="KIL20_000302"
     tRNA            complement(1670..1746)
                     /locus_tag="KIL20_000302"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1710..1712),aa:Arg,seq:cct)
     gene            complement(1775..3850)
                     /gene="fusA"
                     /locus_tag="KIL20_000303"
     CDS             complement(1775..3850)
                     /gene="fusA"
                     /locus_tag="KIL20_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HBD2720366.1"
                     /translation="MSRSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            complement(3863..4333)
                     /gene="rpsG"
                     /locus_tag="KIL20_000304"
     CDS             complement(3863..4333)
                     /gene="rpsG"
                     /locus_tag="KIL20_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HBD2720367.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            complement(4403..4789)
                     /locus_tag="KIL20_000305"
     CDS             complement(4403..4789)
                     /locus_tag="KIL20_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HBD2720368.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGTAK"
     gene            complement(4909..9462)
                     /gene="rpoC"
                     /locus_tag="KIL20_000306"
     CDS             complement(4909..9462)
                     /gene="rpoC"
                     /locus_tag="KIL20_000306"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HBD2720369.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMAAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANADSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIIKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKNI
                     VANRRNAAILLVEPKIKTPFKGVINIENIHEDVIVSIKNKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYQLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(9455..13591)
                     /gene="rpoB"
                     /locus_tag="KIL20_000307"
     CDS             complement(9455..13591)
                     /gene="rpoB"
                     /locus_tag="KIL20_000307"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HBD2720370.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKTGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLIGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLASEKEFIKSLSDEELLNYA
                     RDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(13700..14077)
                     /gene="rplL"
                     /locus_tag="KIL20_000308"
     CDS             complement(13700..14077)
                     /gene="rplL"
                     /locus_tag="KIL20_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HBD2720371.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMVAGGA
                     AAGGAAAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(14098..14577)
                     /locus_tag="KIL20_000309"
     CDS             complement(14098..14577)
                     /locus_tag="KIL20_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HBD2720372.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLSVSKVAAKFEENNDKFE
                     IKTAYIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(14729..15430)
                     /locus_tag="KIL20_000310"
     CDS             complement(14729..15430)
                     /locus_tag="KIL20_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HBD2720373.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(15485..15910)
                     /gene="rplK"
                     /locus_tag="KIL20_000311"
     CDS             complement(15485..15910)
                     /gene="rplK"
                     /locus_tag="KIL20_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HBD2720374.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(15936..16469)
                     /gene="nusG"
                     /locus_tag="KIL20_000312"
     CDS             complement(15936..16469)
                     /gene="nusG"
                     /locus_tag="KIL20_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HBD2720375.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(16479..16658)
                     /gene="secE"
                     /locus_tag="KIL20_000313"
     CDS             complement(16479..16658)
                     /gene="secE"
                     /locus_tag="KIL20_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HBD2720376.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVAVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(16677..16752)
                     /locus_tag="KIL20_000314"
     tRNA            complement(16677..16752)
                     /locus_tag="KIL20_000314"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(16717..16719),aa:Trp,seq:cca)
     gene            complement(16765..16923)
                     /gene="rpmG"
                     /locus_tag="KIL20_000315"
     CDS             complement(16765..16923)
                     /gene="rpmG"
                     /locus_tag="KIL20_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HBD2720377.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(16976..18175)
                     /gene="tuf"
                     /locus_tag="KIL20_000316"
     CDS             complement(16976..18175)
                     /gene="tuf"
                     /locus_tag="KIL20_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HBD2720378.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(18244..18318)
                     /locus_tag="KIL20_000317"
     tRNA            complement(18244..18318)
                     /locus_tag="KIL20_000317"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18284..18286),aa:Thr,seq:ggt)
     gene            complement(18423..18499)
                     /locus_tag="KIL20_000318"
     tRNA            complement(18423..18499)
                     /locus_tag="KIL20_000318"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18463..18465),aa:Gly,seq:tcc)
     gene            complement(18506..18591)
                     /locus_tag="KIL20_000319"
     tRNA            complement(18506..18591)
                     /locus_tag="KIL20_000319"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18555..18557),aa:Tyr,seq:gta)
     gene            complement(18641..18716)
                     /locus_tag="KIL20_000320"
     tRNA            complement(18641..18716)
                     /locus_tag="KIL20_000320"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18681..18683),aa:Thr,seq:tgt)
     gene            complement(18831..19568)
                     /locus_tag="KIL20_000321"
     CDS             complement(18831..19568)
                     /locus_tag="KIL20_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HBD2720379.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKAKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDEVLKEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDEGKIIE
                     ENDPKSFFENPKSERAKKFLNLFDYHK"
     gene            complement(19570..20226)
                     /locus_tag="KIL20_000322"
     CDS             complement(19570..20226)
                     /locus_tag="KIL20_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HBD2720380.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISIIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFVYIIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(20219..20920)
                     /locus_tag="KIL20_000323"
     CDS             complement(20219..20920)
                     /locus_tag="KIL20_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HBD2720381.1"
                     /translation="MDFDFILVQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLDLICLSVEETLRP
                     SFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLHA"
BASE COUNT         6509 a         4263 c         2825 g         7325 t
ORIGIN      
        1 taaatcattt tttttaacca aaatatcccc gtaaagctct aaatttctag gatcactatc
       61 cttttttgtt aaaagctctt tcataagttt ttgagcattg ttgatatcat ttgaatttaa
      121 agcataaaga gcactaagtc gcttaagatt gtcattttga tttaaataag gctttgctag
      181 attatttaac tctgcttgct tgtcaagatt gtttgctaaa gtaagtaaaa atgcattttc
      241 taaaaaatta gtattattat aatcttgata aagacttaaa aattcatctc tggcttcttt
      301 gtattgttta taatactcat aattataagc cttcataacc cttaaatcaa aatcattgct
      361 tttatatttt gtataatcag gataaacaac attgattttt gaacttccac aagctgccaa
      421 aaaaaaggct gctaaaacaa ataacaaata cctatacatt ctttttctaa ttccttttga
      481 tgtgttttaa aatattccca aaatggaaaa gttctgcatt gttttggacg aaaatcgtag
      541 atactgcaat ttcttttttg agtatcaaaa aaaatgcaag caaagccatc ttcaaattcg
      601 acttccttaa aactcatttt aaagcccact tttctcaagt atttttcagc aaattctttg
      661 ctttctaaat ttaaatgctt tcttaatgct tctaattctt ctttgcttgc aaaaatattg
      721 ccactttctc cagtgcaaca ctttccaccg catttctcac aagcattttc atcaaaagca
      781 taagaaaaat ttttatcaaa tatcataact ttttaaccta aatcttaagt gaatttcttg
      841 catttgtttg cttaaaattt cattttcata tacaaaaaaa ggaggtaaaa tctcacaagg
      901 cgattttgaa ccttttttta cctgtatcaa aacaagtctt gcttttttgt tttgatgtgt
      961 atgtacaaag caaagctttg ttatttttat ttttatatct tttaaaataa aacaaatttc
     1021 atctaaagct aaagcttcat agcaaaaata caaagtacca tttggcttaa gcatagaatt
     1081 tgctttagtt aaaaagctat gcaagggtaa aaattcctga aatttactta tagctttatg
     1141 ctgatcttca ctcttgtaag ctccttgtct ataaaatgga ggattgcaaa ctatgaagtc
     1201 aaattttttt atgctttgaa attgattgaa atcatcatga aaaatatcgc cttgtatttg
     1261 gttggatttt aaattttttt caatcaattt tatattttct ttttgaatat caatcaaaga
     1321 taaacttaaa tttgcaatat tttttttaag taaaatacct atgataccac agcccgcacc
     1381 tacatcaaaa acagcgcctt taattccttg ttttaaaata aaatcagcta aaattaaaga
     1441 atcactatta taacgatacc cttgtgataa ttgtgctagc gtaatcaaat ctgacatata
     1501 ttttaatgcg ttggaatttt aatgcgtttt ggaggttgtt ctttaaatat attttgttct
     1561 tttgttatat tattatcttc tttaaaattt actgggcttt gtgctgtcaa aaaagaaatt
     1621 acaaaagtta taaaaaaagc aatttttatc ataataacac ctcataaaat ggtgtccacg
     1681 gcgagattcg aactcacggc ctcaaaatta ggaattttgc gctctatcct gctgagctac
     1741 gaggacagaa agcgggaaaa atcccgctaa aaatttaacc gtttcttttt ttgatgattt
     1801 catccgcaac atttttagga acttcatcat agtgatcaaa ttccatagaa taagtcgcac
     1861 gaccttgagt ttgacttcta agatcagtag aataaccaaa catttcagcc aaaggacaaa
     1921 atgctgtgat gattttattt ccaccacgct catccatgct atttacttga ccacggcgtt
     1981 tgttaagatc tccaataaca tcacccatat aatcttcagg agtttctact tcaactttca
     2041 tcataggctc taagatcaca gcacctgctt ttctagcacc ttctttaaag cccatagaag
     2101 cagcaagttt aaatgccatc tcagatgaat ccacctcgtg ataacttcca tcataaacag
     2161 ttactttaac atcttccaca ggataacctg ctaaaacacc attttgtaat gcttcttgaa
     2221 cacctttatc aactgcagga atgtattctt ttggaattac cccacctttg atatcattaa
     2281 caaattcata tccactacct ggctcaagtg gttcaaggcg taagaataca tgtccatact
     2341 gaccacgacc acctgattgt ttagcgtatt tgtattcttg ttcaacagtt tttctaatag
     2401 tttcgcgata agcaacttgt ggttgaccta cttcagcttc aactttaaat tcacgaagca
     2461 ttctatcaac gataatttca aggtgtaact cacccatacc tgaaatgata gtttgaccac
     2521 tttcttcatc tgtagaaact ctaaaacttg gatcttcttg tgctaattta tttaaagcaa
     2581 tagacatttt ttcttgatca gctttagttt ttggctcaac tgcaacagaa ataactggat
     2641 ctggaaaatc cattctttca aggattacct tatctttttc acttgcaaga gtatcccctg
     2701 ttaaagtatc tttaagtcct acaacagcac caatttcgcc tgcgtaaagc actttaatct
     2761 cttctctttt gttagagtgc atttttaaca aacgaccaat tctttctttt ttatctttag
     2821 ttgagttata tgcataagaa ccgctttcta aacaaccgcg ataaacacgc acgaaagtaa
     2881 gttgtcctac aaatggatct gtcatgattt taaatgcaag ccctgcaaac tcgccatcat
     2941 cagttgattt tacagaaact tctgtgccat cttcatattc acccttgata tttgccactt
     3001 catcaggagc tggcaaataa gccacaacag catcaagtaa aggttgaacc cctttatttt
     3061 taaacgctgt accgcaaagc ataggaacga tagaaagact taaacatcct gctttaatcc
     3121 ctgttttaat ctcttcaagg cttaattctt ctccgcctaa atatttttcc atcaactcat
     3181 ctgaagtttc agaaactgct tctatcattt ttgtgcgata ttcttctgcc ttttctttaa
     3241 gttcagctgg aatttctttt tctacataat ccgttggctt agtatcatct tcccaaacta
     3301 aagctttcat agttacaaga tcgattacgc ctttaaaatt atcctcagca ccaattggaa
     3361 tttgaagtgg aactggatta gcttttaaac ggttgcgaat ttgatcttct acattataaa
     3421 aatttgcacc gattctatcc attttattta caaatactat tcttggaaca ccgtatttat
     3481 ttgcttgtct ccaaactgtt tcactttgag gctgcacccc acccactgaa caaaataccg
     3541 caacagcacc atcaagaaca cgcatagatc tttcaacttc aattgtaaaa tccacgtggc
     3601 ctggagtgtc aataagattg atttgatgat ctttccaaaa acaagttgta gccgcagaag
     3661 tgatagtaat cccacgctct ttctcttgtt ccatccagtc catagttgca gcaccatcat
     3721 gaacttcacc gattttatga ctcatacctg taaagaaaag aattctttca gatgtagtcg
     3781 ttttacccgc atcaatgtga gcagcaatac cgatatttct aacttttttt aaaggagtac
     3841 ttcttgacat acacactcct tcttaccaac gatagtgagc aaatgcttta tttgcttcag
     3901 ccattttata agtatcttct ttcttcttaa atgaagcacc tttgctattt gctgcatcta
     3961 aaagctcagc tgcaagttta tcaatcatag ttctttcgct tctttttctt gcaaaagaaa
     4021 taatccaacg aatcgccaaa gcttgttgtc tagcaggacg aacttcaact ggaacttgat
     4081 aagttgcacc acctacacga cgagatttta cttctaataa aggcttaata ttttcaatcg
     4141 catcattaaa aatatcaata ccttttttct cgccaccttt tttatcaata gcttccaaag
     4201 caccatacat aattgttgta gctgtgcttt ttttaccatc atacattaaa gaattaataa
     4261 attttgtgat tactttatta ccataaatcg gatcaggcaa gacttctctt accggagctt
     4321 ttcttcttct cattattttt ccttcaaatt ttaaatttta ctcaaacaaa atcaaatcta
     4381 acggatttgt ctgtatgaat gattattttg cagtgcctgc tttagggcgt ttagcaccat
     4441 atttagaacg agaaactgtt ctttttgcaa cacctgctgt atcaagagca ccacgaacga
     4501 tgtgatattt aacccctggt aagtctttta ccctaccacc acgcactaaa acaatgctgt
     4561 gttcttgcaa gttatgacct tcaccgccga tatagctgat cacttcaaag ccactagtaa
     4621 gtcttacttt ggcaactttt cttaacgctg agtttggttt tttaggtgtt gtagtataaa
     4681 ccctagtgca aactcccctt ctttgtggac aatttttaag cgctggagat ttagattttt
     4741 ctaaaacttt tttgcgctct tttctaacca attgatttat ggtaggcaca ataattcctt
     4801 tctttaaaaa tgtaataaac tttggatgat atctaaattt tgcttatatt ttagttaaaa
     4861 agattgaaaa tgaagaaata tagcccagaa gggctataaa atagagtttt attcttgttc
     4921 tttaagtttt aaattttgtt caccataaag ccctgttcca acaggtatca ttctacctag
     4981 aataacattt tcttttaaat cttctaagta gtcaaattta cccgctatac ttgcttcggt
     5041 tagaacttta gtagtttctt ggaatgaagc tgcagaaatc acactatcgc ttccaatcgc
     5101 tgctcttgtt acacctaaaa gcacaggctc agcaatagca ggttctccac ccattctaat
     5161 gattctttcg ttttcttcac ggaatttacg tcttgaaacc aaatcaccct cgataaattt
     5221 cgtatgtcca ctatctacaa cttttacttg tcttagcatt tgagaaacga taacttctat
     5281 atgtttatca gaaatcacaa caccttgtcc gcgataaact tgttgaattt cagaaatcaa
     5341 ataataatgc aaggcttttt cacccaaaat tttaagcaca tcatgacttg aaacaactcc
     5401 atctgtaagt ttttcacctg catggataaa ctcgccatct cttacttgaa tatgttttga
     5461 tttatcgatt aaatactcag cgcttgttcc atcttctgct tggataatga ttctttcttt
     5521 agaacgcaaa ggtttatcaa aacgaacaac accatcaatt tctgcaatca cagccgcatt
     5581 ttttggtttt cttgcttcaa aaagttcaga aactcttgga agacctcctg taatatcttt
     5641 tgatttagct gcagcttttg gagtttttgc taaaatatct gcttgagcga ttttatcacc
     5701 atcatgaaca aaaataacgg tttttggttc aagctgataa cgcacagcct tatcaccttt
     5761 tcctgcgatt accaaagttg gtctaactcc gcttggcaaa tactcattaa tcactaaaga
     5821 acgcttacct gtagcttcat caatttgctc atcagcacta taacctgctt caatatcctc
     5881 aaagcttaca acaccatcaa tttctgcaat gatagtatta ttataagcat cccattctgc
     5941 aatcactttt ctttcttttt taggagcact tgcaatgata gtatttgcat catcgatttt
     6001 ttcactatcg ttaaattcta tcttagattc tcttggaata tagtgtcttt ttgcttctct
     6061 atcattttca tcagcaatca ctacaaagaa tcctttttct ttaacaatat cgcctttttt
     6121 aacatttttt accctatcta aaccatcgcc tttaaggata taaaatttaa gcgttccttt
     6181 ttcgcctgct ttgatatttt gaactacagg ctcaccatct tctactaaaa tttcactcgc
     6241 aaaagggata cgatttggta cattccaacc ctctttaatc acttctacga tactttcatt
     6301 ttcttctact tgcataccac tttgatatgg caaataaagt tttccatcta tactgccact
     6361 tacacctgct aattcatttg gtttagcaag atcgtatttt cttagtatgt attttacttc
     6421 ttgtttttta tttttaatag aaacaatcac atcttcatga atattttcta tattaatcac
     6481 acctttaaat ggagttttga tttttggctc cacaagtaaa attgccgcat ttctacgatt
     6541 tgctacgata tttttacctt ctttattttt ataagtttta agattataaa atctgataaa
     6601 accttctttt tgtgcgctta cttgtctatc ttgtaaatcc gtacttgcag ttcccccact
     6661 gtggaaagtt cttagagtta gctgcgttcc tggttcaccg atagattgag cggaaataat
     6721 tcctactgct tcgcctggtt ttaccaattt accttcacca agattgatac cataacattt
     6781 tgcacaaatt ccttttttag ctttgcaggt aataggagtg cggatattga cactttttat
     6841 accgctttct ccaagaattt ttgctttttc ctcatccatt aaagtacctt ctgcaaaaag
     6901 cacagaattt gtaataggat caatcacatc ttcagctaaa accctgccta aaattctttc
     6961 ttctaaagtt tctataatag agctatctgc ggtaatttca ttgatttcaa caccctcatg
     7021 cgttccacaa tcttcaatgg taatttttac attttgcgca acatcgatga gttttcttgt
     7081 caaataaccc gcatttgctg ttttaagagc ggtatctgct agaccttttc tagcaccgtg
     7141 agttgaaata aagtattcaa gaacattcaa cccttcacgg aaattcgaaa taataggagt
     7201 ttcgataata gaaccatcag gtttagtcat aagtcctctc atcgcagcaa gctgagaaat
     7261 ttgagccgca ctacccctag caccagaatc tgccatcata taaatagagt taaaaccttc
     7321 tttatctttt tctacaagct tcatcatctc ttttgaaagg acattatttg tactcttcca
     7381 aatatcgatg attttgttgt atctttcccc tgaagtaatc aaaccaagat tataagaatt
     7441 ttgaatttct cttacttgtt tttttgcttc atctatagct ttttgcttgt cattaggaac
     7501 aataatatct gcaattgaaa ttgaaatacc tgctttagtt gcatactcaa aacctaaatt
     7561 tttgagtcta tctaagaaac ttgctgtaat ctccaaacca ccttgtttat aaacataatc
     7621 cacaagcgcg gcaatgtctt ttttctttaa gactttattc cagctatttt caggcacaaa
     7681 atcaggtaaa atggatttaa taatcaatct tcctgctgta gtggtaatct ttctaccatc
     7741 taccatggtt tgtatactcg catgaatatc taaacactta ctttcaagtg ccatcatcac
     7801 ttcatcaatg cctgtacaaa ttttatgcga acctttagca cctgcttttt ctaatgaaag
     7861 ataataaatt cctaaaacca tatcttgcga tggaacggtt acagacttac cgcttgctgg
     7921 caaaagaata ttcattgatg aaagcataag cactttacat tctgcaatag cctcttgaga
     7981 aagcggtaca tgcactgcca tttgatcccc atcaaagtct gcattaaatg ctgcacaaac
     8041 taaaggatga agttgtatag ccttaccttc caccaaaaca ggatgaaaag cttgaataga
     8101 aagtttatgt aaagtaggtg cacggtttag cataacagga tgccctttta ccacttcttc
     8161 taaacattcc caaacttcat tagttttatt ttctatcatt tttttagctt gttttactgt
     8221 ggttgcataa cctttttctt caagtttagc taaaagatgt ggtttaaaaa gttctaaagc
     8281 cattttttta ggcaaaccac attgatccat tctaagtttt ggacccacaa caataacgct
     8341 acgacctgag aaatccaccc tcttacctaa taagttttgt ctgaaacgtc cctgtttacc
     8401 tttaataatt tcacttaaag atttcaatgg gcgtttattt gctcccttta cagcattagc
     8461 acgacgaccg ttgtcaaaaa gtgcatcaac agcctcttga agcattcttt tttcatttct
     8521 tataatgatt tccggtgcat caagttccat aagtttttta agacgtgtat ttctattgat
     8581 aacgcgacga tataagtcat tcacatcaga aactgcaaat tttccaccat ctaaagccac
     8641 taaaggacgc aaatctggcg gtaaaactgg aagatttgta atcatcatcc attcaggacg
     8701 atttggtacg gcttcatcgc tatcggcatt ggcgtttaaa tttgaattta agaaattttc
     8761 tacaactttt aagcgtttaa tgatagtttt tttcttagcc tctgaatttg tagccgccat
     8821 ttcttcttta agctgattta aaagtgctac aagatctaaa tttgcaagta aatcacgaac
     8881 aacttctcca cccattcttg ctttaaagcc actattttca tagcgttgca ttaaattttg
     8941 atattgctct tcgtttaaaa catcacaata ttctactttt ttggtgcttt cattatcata
     9001 gaaagcatca cctgggtttt caacgatata agcttcataa taaagcacac gctcaagatc
     9061 tttcatctta acacccaaaa gcgttcctat acgacttgga agagaattaa cataccaaat
     9121 atgagccaca ggagttacaa gctcgatatg tcccattcta gaacgacgca cttttgaatt
     9181 tgctacttca acgccacatt tttcgcactt aacaccttta aaacgcattt ttttatactt
     9241 gccacaaaga cattcataat ctcttatagg tccaaaaatc tttgcacaaa aaagcccatc
     9301 tctttcaggc tttaaggttc tataattgat agtttctggt ttttttactt ctccataaga
     9361 ccatgatttg attttttcag gacttgcaag tcttagttga aacgcttcga aatccctagg
     9421 tcttgcatct tctttgattt ctattacttt aaatttactc attatcttca tccttatcaa
     9481 aaatctcaac atctaaagca agagatttaa gctcattggt taatacaaaa aatgtttcag
     9541 gaattcctgt tgctggaaca ttttcacctt ttgtcaatgc tttataagca ctaaatctac
     9601 cttctacatc atctgatttg atagttaaca tttctcttaa agtatgagcc gctccataag
     9661 cttcaagtgc ccaaacttcc atctccccaa atctttgtcc cccaaagagt gctttaccac
     9721 ccacaggttg ttgggtaact aagctgtaag gtcctgtact tcttgcatga actttctcat
     9781 caactaagtg gtggagtttt agcatataca tacatcccac atgaacacgc tctgcgattt
     9841 tctcacccgt gcgtccatca taaagttctg ttttgccgtc catatctatc ttggccattt
     9901 caaaaagctt gctaaattct tctatattta caccttcaaa aacaggagta gcaaatttaa
     9961 ctcctttact ccagtctcta gcatagttta aaagctcttc atcgcttaag cttttaataa
    10021 attctttttc gcttgcaagt cttggaatag aacaaatttc aagcattttt gctcttaatt
    10081 ctttaagaaa atctttttgc tttctgtcaa aaatttcttg aatctgatct ccgagtctaa
    10141 gtccaattaa acccaaatgg ctttctaaaa tttggcctat attcatacga cttggaacgc
    10201 caagtggatt aagcgcaata tccacgcttt tgccatttgg taaataaggc atatccactt
    10261 caggaactat agttgaaact atacctttgt ttccgtggcg tcctgccatt ttatcaccga
    10321 ctttaagctt tctctttgta gcaatataaa ctttaacaag cttaattacc ccacttggta
    10381 aaatatcatc tttttctaaa atttcaagct tttcatcgtg ttctgctttt aattttttct
    10441 tctcattttg gaaatgattt tttaaatcat cgtattcttt ttgaatctct ttagaataag
    10501 ctttaatcaa agttgttaaa gtaaaacgat tgattttttc aagttcgcta atatctgcag
    10561 tttgtccttt tttataattt ttatctccaa ttttttgatc actatttaaa ggggctttgg
    10621 aaagaagagc gcaaacacga agcatttctt ctctatccat catcaaaagt ctatcatgat
    10681 gttctttttc taaagccatt ttttctttat cataagattt tattgcgcga tcatcttttt
    10741 catagccttt tttagtgaaa attttaacat ccacaacaac accctctaaa gaagcggttg
    10801 cataaaggga tttattcaca acatgtcctg ttttttctcc aaaaatagct cttaaaagtc
    10861 tttcttcagg agttggttta acctcacctt ttggagaaac cttacccacc aaaatcatac
    10921 ctggtttgat atgagtacca atttttgcaa taccgctctc atcaagatgt gcaacatctt
    10981 cttcttttac atttgggata tctttggtaa tttcttctat accgtctttt agttctcttg
    11041 cttcaatttc tttttcataa atgtgcacgc ttgtaaaggt atcttcacga ataattctct
    11101 cacttacaac tatagcatcc tcatagttat aaccattcca aggcataaaa gcgattaaag
    11161 catttttacc tatagcaagt tcgccttgat ccatagaagg accatctgcg ataatttgtc
    11221 ctgcttttac tatatcacct tttttaacaa taggatgttg aatataattt gtattttgat
    11281 tggttcttaa atttttctcc atagtataat ggtcaataaa tggaccttta tcatcttcac
    11341 ctaaaatgaa aatgctttta ttatccactt tctcaaccac accgccacgc tttgctttaa
    11401 cagcttccca agcatcacgt gcaataattt gttccatgcc tgttcctact atcggagctg
    11461 aagcagtaag aagtggcaca gcttgacgtt gcatgtttga acccattagc gctctgtttg
    11521 catcatcgtg ctctaaaaac ggaatcaaag aagccgcaac cccaacaacc atacctgagc
    11581 aaagatcaat taattgcact tcttcgcgtc ttgcaagtat agtttcacca tcttgtctag
    11641 cctcaacaaa ttcttctact atattgcctt tagcatcaac cttagttgaa gctggtgcga
    11701 taaacaagcc ttcttcttgt gtcgctgtaa gataaacaac ttcattagtc actttaccat
    11761 ttacaacttt tctatatggc gcttcaacaa agccaagttc atttactttt gcataagtag
    11821 aaagagtgtt aatcaaacca atattttgac cttcaggtgt ttcaactgga caaattctac
    11881 cataatgtgt cgcgtgaaca tcacgcactt caaaacctgc tctttctttt acaagtccac
    11941 cttcaccaag cgctgataaa cgacgcttat gagtaacctc gcttaaaggg ttggtttgat
    12001 ccataaattg cgaaagctga cctcctgtaa aaaattcaat gatagttgta gtaatcattt
    12061 taggattgat taaatcataa ggcattactt tatcaagatc cgcatttaaa gaagtaaatt
    12121 tatctctgat cgccttttgc atttttgcaa gacctaaatg aagttcattg gccaaaagtt
    12181 cacctataga acggatacga cgatttccta aatgatctct atcatcaata tgtcctttac
    12241 cattttttac tttaattaaa tattttgcag ttttaataat atcttcatta gtcaaaacag
    12301 taacatactc aggtacttca agacctaatt tatggttcat tttcatacga cctaccttgg
    12361 taagatcgta tctttcagga ttgaagaata aatcatttac aaaagccttc gctgcatctt
    12421 ttaccacagg ttcacctggg cgcataactt tgtaaattct aatcgcagct aaatcatttt
    12481 catcatcgat attttcactt tgtttaagaa gttttagagt ttctccatct tgagcaaagg
    12541 agttaataat cgctgcatca acgccattag ccaagtcatt tgctatatca aaactttttt
    12601 gctctttaat cttagcaagc ttactctcat ctaacaaagt taaagaatca aataaaacct
    12661 ctccactttc tttatcaata ataggatttg ctaaataacg attaagtaaa atttctacag
    12721 gatattctat ccattttaaa ccgtctttaa taagctgttc tgcttttttc tttgtaagtc
    12781 tttttccagc ttgatgaacg atttttcctt tttcatcttt aatatcatat tctattctat
    12841 ccataaaatc atttggatta aattctgtta aaaatttatc ttttttcaca tgtatagtct
    12901 gaataggata aaacaactta ataatatctt gttttttata ccctaaagct ctaaaaagca
    12961 tagttacagg aacttttcta cgcttgttga ttcttacata caaaacatct ttggcatcgt
    13021 attcaaaata aagccacgaa ccacgatcag gaataatttg tgctgtataa acaagcttat
    13081 ttgcaaccgt tgagctttct tcttctttaa aaataacacc agggcttcta tgtaattgat
    13141 ttacaaccac cctctcaacc ccattaatga taaaagatac acgatctgtc attaaaggaa
    13201 tttcgcggat ataaatttct tgttctttaa tatcttttac gccaactttt tcccctgttt
    13261 tttcatcttt ttcatgcaga gtaagacgga ttttcatttt taaatttaca gaataagtca
    13321 aacctctttc catgcattcg cgaatggtat attttggctt gcctatttca ctactaacat
    13381 attcaagact caatctattt tgcggatcat gaataggaaa aattgattta aaaacttttt
    13441 ctataccact ttcaccatta tcaagattta aaaaataatc aaaactcttt ttttgtaatt
    13501 gtagaagatt tgggatttct atttgttttg aaatgtttga gaagtctact cttaaacgat
    13561 ttcctaattt attatctaac atatcgcaca tacctcatgg taaattttgt aaatttaaaa
    13621 aagaagacct aaaaattagg taaaaataaa aaaagaagac ttgccttgac aaatcttctt
    13681 ctaactttaa agcttaaaat tacttaagtt ctactttagc accagcttct tcaagttgtt
    13741 ttttagcttc ctcagcttca gctttagcca caccctcttt tagagttgaa ggagtttgct
    13801 caactgcatc ttttgcttct ttaagaccaa ggcctgtaag agcacgaacg attttaataa
    13861 cttcaatctt tttagcaccg ccatcagtta aaacgatatc aaattcagtt ttttcttcag
    13921 cagcagctgc agcaccacca gctgcagcac caccagctac cattacaggg gcagcagaca
    13981 caccaaattt ttcttcaaat tcttttacaa gttctgataa ctcaagaaca cttaaatttg
    14041 aaatatattc taatacatct tctttagaaa ttgccatttt ttatcctttt atttaattta
    14101 ttcagattct tttttatttt taagcgcatt taaacctatt gtgaaattgg taattggcgc
    14161 attccaaact tgcaaaagca tagcaagcaa ctcattgcgt gaaggcattt tagcaagagc
    14221 tttaacctta gcaacatctg caacttcgcc ttcaatataa gctgttttga tttcaaattt
    14281 atcgttattt tcttcaaatt tagcagctac ttttgaaaca cttagctgat cttcgcccca
    14341 aagataaata tttgtatctt taagaactag acctgtttta ccggaattgt taagagcaat
    14401 gttagccaaa gtatttttaa caatttgaac ttttacattg ttttctcttg cattatttct
    14461 aagctcttct agtttttttg tgctaagacc tctgtaatta caaactacaa tagcttcact
    14521 agctttaaaa ccttcttcaa gtttagcaat aatctcaact ttttcgcttc tagtcacatt
    14581 ttctcctttc cgattgagat ttcaagtaga gtggaaatcc aattaagctt acgcctcgac
    14641 tatcttcaat ctaaaataaa catctcaaaa aatcaaaaat tttttcaaat gtttatttta
    14701 gaacaaaaga gttgcaaaaa agcaactctt atttcatatc aagcaattct tgtgtttcaa
    14761 gctttacaga agggctcatt gttaaagata aagccgcatt tttaatatat ctacctttag
    14821 ctgcggcagg tttatgtttg ttaattgcct ttacaaaagt gctaacattg tcccataatt
    14881 gttctttgga aaaacttact ttaccaagac ctgcatggat atttccttgc ttatcaacac
    14941 ggaaatttac ctgaccactt tttgcattat taactgcttg agcaacatcc atagtcactg
    15001 ttccggtttt aggatttggc attaaacctt ttgggcctaa aattctacca actttaccaa
    15061 caagtcccat taaatttgga gtagcaatca aaacatcaaa attcatatta cctttttgaa
    15121 tttcttctac taaatcatcg ctacccacaa tatctgcacc agcatttttc gcttcatcag
    15181 cttttgcgtc ttttgcaatt acagcaacac gaactttttt acccgttcca gcaggtaaaa
    15241 cgacagatcc tcttaccatt tgatctgcat gtcttggatc aacattaagt tttaaagcaa
    15301 tttctacagt ctcatcaaat ttagcagact ttaaagtctt tattgtatca attgcatcgc
    15361 ttaaagcata ctctttattt gaatcaattt tttgtgataa ttcttttaat ctttttgcta
    15421 tcttagccat ttattttctc cgcattttaa agtgctaccg ccttttacct tggcggtgaa
    15481 aggattaatc tacgatttca acacccatag aacgagctga acctgcaata attttagcag
    15541 cttgatctct atctttagta tttaaatctg caattttctt atctactatt tctaaaactt
    15601 gagcacgagt taacttaccc accttatttt taagtggatt atccgtacct ttagaaattc
    15661 cagctgcttt tttgatcaaa tccgtagctg gcggttgttt tgtaataaaa gtaaaacttt
    15721 tatctgcata aacagtgata acaacaggga tattaaaacc tgccatatct tttgttcttt
    15781 cattaaaagc cttacaaaac tccataatat taacaccttg ctgacccaaa gcaggaccaa
    15841 caggtggtga tgggtttgct tttgtggcag caatttgcaa tttaatttcg cctacgactt
    15901 ttttagccat aacaaatctc cttacttgat ataaattaaa ttattttctc aacttgagaa
    15961 tataagatct ccactggagt tgagcgtcca aaaatagaaa catttaattt taataaacca
    16021 cgaaccatat catactcttc tacaattgca gtaaagtttg caaatggccc ttctgtgatt
    16081 ctcacatttt ccccttcttc aaaagaaatc tttggtttag gcgctgcacg attgtgaact
    16141 ttttccaaaa tcaaattaat atctttttct gttaaagggg ttggcttttt ggattctcca
    16201 ataaaacgac caacctttgg aagagattga atgcgatgcc aaagctctgt atttaaatca
    16261 agaagtgcaa aaacgtatcc tgaatacaaa cttctttcgc taatcttctc ctttccattc
    16321 ttaaattcaa taacatcttc agttggaaca acaatttctt taagttgttc ttcaattccg
    16381 ttatctttta ctaaattttc aatggctctt ttaactgcca tttcactgcc agcataagtt
    16441 tgaattgcat accatttatg agtactcatt tactctcctt atacgatcgc agaaacaata
    16501 gaggacataa gccaatccac taacgccaaa aacaaagaaa tcaccgcaac aaccacaaaa
    16561 actgtaatat aggcatttct tacctgttct tttaaaggaa aaattacttt ccttaattcg
    16621 gcttttgata atttaaaata agttattaat ttttccattt atttaaacct taattatggc
    16681 agggcaagag ggattcgaac ccccaaccat cggatttgga atccggcgct ctaccgttgg
    16741 agctattgcc ctaagggcgc aagcttaact ttttagctta acttctttgt gaagtgtatg
    16801 tttttttaat cttgggcaat atttttttaa ttctaatttt tcagtagtat ttttactatt
    16861 tttataggtg ctataattaa tatcaccaca ttcttcacac tttaaaccaa ctttaattct
    16921 catttcaatt ttccttaaaa aattaaagcc aagcttttaa cttggcttta ttaaattatt
    16981 taataatttt agaaacaaca cctgaaccaa cagttttacc accttcacga atagcaaaac
    17041 gagttccttc ttcaagtgct actggagcga tcaagcttac agtaattctc acattttcac
    17101 ctggcataac catttcaaca ccatcagcta atttaatcga acctgtaaca tcagttgttc
    17161 ttacataaaa ctgtggtcta tagttgttaa agaatggagt atgtctacca ccttcatctt
    17221 tatttaagat ataaacttca gcttcgaagt cagtgtgtgg agtaattgat tttggtttag
    17281 caagaaccat accacggata acttcttcct ttttagtacc acgaagaaga acacctacgt
    17341 tatctcctgc ttcgccttga tccatttctt ttctgaacat ttcaacacct gttacagttg
    17401 ttgtttgagt atctttaata ccaacgattt cgatagtatc acctactttt acaacacctt
    17461 tttcaattct acctgtaaca acagtaccac gacctgaaat tgagaaaacg tcttctattg
    17521 gcattaagaa gtctttttca gtatcacgag ttggagttgg aatatagcta tcaactgcag
    17581 ccataagatc cataattttt gctgaccatt caccatcttg tccagcttta gcttcttcaa
    17641 gagcttttaa agcagaacca gaaataatag gtgtatcatc gcctgggaaa tcataagagc
    17701 ttaataattc tctaatttcc atttcaacta actctagaag ttcagcatca tcaaccatat
    17761 ctgctttatt cataaaaaca acaatatatg gaacgcctac ttgacgagaa agaagaatgt
    17821 gttctctagt ttgtggcata ggaccatctg cagcagaaac aaccaagatc gctccatcca
    17881 tttgtgcagc acctgtaatc atgtttttaa cataatctgc gtgacctggg cagtcaacgt
    17941 gtgcatagtg acgattgtct gtttcatatt caatatgaga agtagcaata gtaataccac
    18001 gctctttttc ttctggagca ttatcgatat tatcataatc tttaagctct gctaaacctc
    18061 ttctagaaag aacagcagaa atagcagctg ttaaagtagt tttaccatgg tcaacgtgac
    18121 caatagtacc aatatttacg tgtggcttat tacgtgaaaa tttttcttta gccatttttt
    18181 tcctccgtat aaaaaataaa ttgagcaaag caagtcttat atctatataa ttttttcaat
    18241 tcatggagct catagcggga attgaacccg cgacctctcc cttaccaagg gagtgctcta
    18301 cctctgagcc atacgagcgc tcagaaaaat tatacataat aatagacaac aaaaactctt
    18361 aaatgggata tatactgtaa gttaaaggtt ttaaaataca gctcccagtt cttttaaatt
    18421 gttggagcgg gaaacgggac tcgaacccgc gaccctcagc ttggaaggct gatgctctag
    18481 ccaactgagc tactcccgca aagcatggtg gtgagtcgtg gattcgaacc acggaaggcg
    18541 aaagccagca gatttacagt ctgccctcgt tggccacttg agtaactcac cataaaaata
    18601 ttgctttttc aatattctgg tcaaacactg ctaaaataaa tggagctggt taagggactt
    18661 gaacccccga cctgctgctt acaaggcagc tgctctacca actgagctaa accagcaaaa
    18721 ataaaagtga gattataact caaaaaaaaa tttttgtcaa gactttttta gtttttctat
    18781 aaaattttag tcttgtaaag tttattatca taaaccgata ttatttttat ctatttatga
    18841 taatcaaaca aatttaaaaa tttctttgct ctttcgcttt ttggattttc aaaaaaactt
    18901 ttaggatcat tttcttcgat gatttttcct tcatccataa aaataatttt atctgctaca
    18961 gctttagcaa aacccatttc atgagtaaca ataagcatag tcataccctc ttttgcaaga
    19021 tttagcatta cctctaaaac ttctctaaca atctcaggat ccaacgctgc tgtaacctca
    19081 tcaaaaagca ttaactcagg attcatacat agacttctta ctatggcaat tctttgcttt
    19141 tgtcctccgc taagttctct tggataagca tgaattttat gcaaaagccc caccttttca
    19201 agccaaattt tagcctcttt taaaacctca tctttctttc ttttttgcac tttcataggc
    19261 cctaaaagta tattttcttc aacacttaaa tgctcaaaaa gctcataaga ttgaaaaacc
    19321 ataccaactt tttgacgcat tcttggccat tctttaaaat ctttatctat tttctcatta
    19381 tcaatataaa tattaccact tgcaatctct tcaagcccat taatacaacg caaaagcgta
    19441 gattttccac atccgctagg acctaaaatc accacaactt ctttagcctt aacttctaaa
    19501 ttaatatctt ttaaggcgtg atgcgaacca taatactttt gtaaattttc tatttttagt
    19561 atgctcattt tagctccatt ttttctctaa ttttcttgaa tataaagtga taggataaca
    19621 aagtataaaa aagataaaaa aaatcaaacc ataaataata aaaggtgcaa aatcatttct
    19681 attatgaaat tctataattt gttgccctac ttttacaagc tctaccgcgc cgattaaata
    19741 agcaaaggtt gtacttttaa tcatacgagt aagtaaattc atgctcatag gagttaaacg
    19801 acgcatagct tgtggaataa taatataaac aaaactttgc accgtattta aacctaaaga
    19861 tgatgcactt tcatactgat gttttggaat actctgcaag gaaacacgca ccaaatccat
    19921 catctcaaaa caaccccaaa tgctaaaaac aataatagct gcacttacag aactcaaatc
    19981 ccacccaaac catctaggaa aaccaaaata caccacaaaa agccatacta aaagtggcat
    20041 aacacgcaca aattctaaac ccaaacgaca aaaagcatag atataggtat ttttaaaact
    20101 cattaaaatt cctaaaaata acccacctat cgaagtaata ataatgctga taaatgaaat
    20161 ttcaagagtg acaaaaagcc cttgccagag tcttaaaagc gtatcggtat ttaaaagttc
    20221 aagcatgaag caaccttttt tcaaacttta gcaaaataaa agacaaaggt aagataatac
    20281 acaaatatcc cataaacaac aaaaacaata gctcatctgt cttataggtt aaggaattta
    20341 aactcttcat taaattcacc aaatctggca aggcaataat actaacgact gaagtttctt
    20401 tgattaaaaa tataatatta gcactaatac ttggcataga aatagccaaa gcttgcggca
    20461 aaatcacata acgcaaattt ccaaattttg aaaaacccaa agaaagtccc gcttcaaact
    20521 gctgttttct tatggcttca aatcccgctc ttaaactttc agccatataa gaacctccta
    20581 aaaaactaag tcctactata gcacaagcaa aagaaggcct taaagtttct tctacgctta
    20641 agcaaatcaa atcaagcggt ggaatttgct ctaaatgtat attaaattta ggtaaagcat
    20701 aatataagaa aaaaagttga attaataaag gcgtatttct tgaaaactct atataaagct
    20761 tgcaaatatt ttctaaaatt tttattttaa aataactcat taaaatgcaa aacaagccta
    20821 ttatcaaaga aaaaataatt ccaaaaaagc ttagttttat cgtaagccaa gcagccgtta
    20881 aaaaagcagg agcttgaact aatataaaat caaaatccat tc
//
LOCUS       DAEBKH010000013        20651 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.013, whole genome shotgun sequence.
ACCESSION   DAEBKH010000013 DAEBKH010000000
VERSION     DAEBKH010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20651)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20651)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20651
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.013"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            197..1648
                     /gene="murJ"
                     /locus_tag="KIL20_000324"
     CDS             197..1648
                     /gene="murJ"
                     /locus_tag="KIL20_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HBD2720382.1"
                     /translation="MKSLVFKNFIINALGILFSRILGLARDVLIALFLGAGLYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFS
                     SFFTKLFAFGFNADTIALAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAAL
                     FNLSIVIAAFFVDKNAPQNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMALSIKF
                     KKAKAKLQGFYGNFFHGVLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLA
                     LFAIALTQVSFPKILKHLKSGQENLALKFMQRALAFLSILLIASSIIGSAFALEISKL
                     LFERGNFTHEDSVITAYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLII
                     SALCSMAFIFLIKDESLKVIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLV
                     IVALIVFTILLILIKPYILSFFIGIFTSFKGVF"
     gene            1648..3036
                     /locus_tag="KIL20_000325"
     CDS             1648..3036
                     /locus_tag="KIL20_000325"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HBD2720383.1"
                     /translation="MRLLDSVAKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLANGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKS
                     EIAKQILEILNDDLNISKALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDTTLYFQWGVSKEEREEIEKLILERTEAKKNKDFNTADAIRERLSSKKITLLD
                     TPNGTIWEKINA"
     gene            3029..4771
                     /locus_tag="KIL20_000326"
     CDS             3029..4771
                     /locus_tag="KIL20_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD2720384.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFAKHNDTLCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            4803..5861
                     /locus_tag="KIL20_000327"
     CDS             4803..5861
                     /locus_tag="KIL20_000327"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HBD2720385.1"
                     /translation="MAYEMIKPLLFKLNPEHAHALVEYSLRALSASFPGALSFLAHKY
                     IVDDESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKIISKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VAKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            5858..7108
                     /locus_tag="KIL20_000328"
     CDS             5858..7108
                     /locus_tag="KIL20_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HBD2720386.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTRTI
                     PKIHTKEPKQDGVKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDENLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDIDPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            7101..7997
                     /locus_tag="KIL20_000329"
     CDS             7101..7997
                     /locus_tag="KIL20_000329"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HBD2720387.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYIAGLIESLEFRLPLC
                     PPSKENFAKIEEVMKKYKIKGF"
     gene            7997..8776
                     /locus_tag="KIL20_000330"
     CDS             7997..8776
                     /locus_tag="KIL20_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HBD2720388.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGVNIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDADFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(8817..9122)
                     /locus_tag="KIL20_000331"
     CDS             complement(8817..9122)
                     /locus_tag="KIL20_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720389.1"
                     /translation="MELDQILLYAFIFLNLFAFFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFVGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(9135..9731)
                     /locus_tag="KIL20_000332"
     CDS             complement(9135..9731)
                     /locus_tag="KIL20_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HBD2720390.1"
                     /translation="MQIIKQACGAYETNCYILFSEHGEIIIDPGFDALNFIKKHVKNP
                     LAILNTHGHYDHVWDNEKVKQAYQIPIYIHKNDAFMLEDPFNQGFMPSKADYLIDDEN
                     IISIGGLDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            9805..10545
                     /locus_tag="KIL20_000333"
     CDS             9805..10545
                     /locus_tag="KIL20_000333"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HBD2720391.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYTLAKYLNLHENFIKKAPSADLWENQSDEADLGFSYAKIDEGLKALETNDEKLLRT
                     LDPSLIAMLKNRMQKNTFKGKMPEILEI"
     gene            10549..11475
                     /locus_tag="KIL20_000334"
     CDS             10549..11475
                     /locus_tag="KIL20_000334"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HBD2720392.1"
                     /translation="MSEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVFYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLTQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFNFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LVTAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            11472..12884
                     /locus_tag="KIL20_000335"
     CDS             11472..12884
                     /locus_tag="KIL20_000335"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HBD2720393.1"
                     /translation="MKLVESRNVKNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLSEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNEIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNANNILSEFFNQGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILTLFDLKNS
                     DEKVFEARNIKKEILDWMQK"
     gene            12881..13600
                     /gene="kdsB"
                     /locus_tag="KIL20_000336"
     CDS             12881..13600
                     /gene="kdsB"
                     /locus_tag="KIL20_000336"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HBD2720394.1"
                     /translation="MIIIPARLKSSRFHEKILCDIGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKDHESGTDRINEACKKLALKDDEIIINVQADEPFIECE
                     NLLKFKEFASSCLDKKAFMASCYKKITQEEAMDPNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLSSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYERALKIYLEK"
     gene            13687..15006
                     /locus_tag="KIL20_000337"
     CDS             13687..15006
                     /locus_tag="KIL20_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720395.1"
                     /translation="MSIFSINDNSNYNSILSQSKANKESKENSKISFANAFLKQNASK
                     LNEIQSANSQTLARSEVLNSTNTTNTSNNTNFSISSKTSSPNYDISSEFKNSIYTLKY
                     KQADISNNTAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDEIERVAEYNVSDIRE
                     YLGVDKYYSNIDMAETIKQYYNLFSNALGQSFPSDKTSFSEADINSMPSGYAVGGDKC
                     MNFNDPNNRMNITGLKDFSNSLISNVYKTHEQAKEADDLWVDSGYMIDGLLPKTLGLS
                     LEEIKNVSKGEDWQFNPDMSVYPQNEDGSYSKEALFMSFLKAQNGQPVESPKTTLNPT
                     IEAYNRAMAKESFSTTSVDIGDIMTGKVDFASLFKYLASKNGKLEGQLYMYENNISKE
                     SAMGNWALDAEIKQAIANGWKAKPSTINSYADSIMDRLNNLIGQTRA"
     gene            complement(15065..16492)
                     /locus_tag="KIL20_000338"
     CDS             complement(15065..16492)
                     /locus_tag="KIL20_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HBD2720396.1"
                     /translation="MLINALYFVNSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLAYFALIHTPILYFWSKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFAILALRFSFLFNLFSLPFALFSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQIYIAEAGAR
                     LKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEKAFLHSST
                     QKEEDKLISLYDDKLSLIHSSLEGLEFKIDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYELCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKNGDLILFSNDAPSFM"
     gene            complement(16493..17212)
                     /locus_tag="KIL20_000339"
     CDS             complement(16493..17212)
                     /locus_tag="KIL20_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HBD2720397.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLSLPQILILHGWGANKELMKQS
                     FCPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLDVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGVNL
                     SPMMYETFKKVVDEDFSEIFAKQKAKSLIFWGKSDEATPLYCGEKMHELLKNSTFYPL
                     EGDHFFFLKHSAFIAQKIKEI"
     gene            complement(17214..17429)
                     /locus_tag="KIL20_000340"
     CDS             complement(17214..17429)
                     /locus_tag="KIL20_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HBD2720398.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VMLSMKEFERLQNAMQLLENIYKNQKA"
     gene            complement(17489..18529)
                     /locus_tag="KIL20_000341"
     CDS             complement(17489..18529)
                     /locus_tag="KIL20_000341"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HBD2720399.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFVFCDEERRFY
                     HIPSEKMNSKTFSTKAYKNEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKEKLS
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEVYLNEINPNPGSLANYLFKDFNTTLNALADQISLEKMIKINYN
                     FLHSINGQKGKL"
     gene            complement(18539..19090)
                     /gene="ruvA"
                     /locus_tag="KIL20_000342"
     CDS             complement(18539..19090)
                     /gene="ruvA"
                     /locus_tag="KIL20_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HBD2720400.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLASAQATGTSELIKEALKKLG"
     gene            complement(19066..>20651)
                     /locus_tag="KIL20_000343"
     CDS             complement(19066..>20651)
                     /locus_tag="KIL20_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HBD2720401.1"
                     /translation="QAVKLVANKNLTKIVAQIDFTNLDFHEKLALELLQNIYKKMLKL
                     KFLIGIRIFDFKKNLMSFCNQHKNTPLNKTIQITVAQGIDPIESQDESLILTYKEKTK
                     NYTIDEKRSGIIVVDENEVVLKHAKFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAF
                     KQVEQDGYTEYIALKKGYVVQDGEKFDIANELDFNGVDFKNIGIIRAGLDKNVKINIK
                     FLSEVKDAVNSGVGIECEELNVVGSVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKT
                     HRGFAEAEILNIDLLEGGTIKAKEVRIKKSLGGNIQADKIYIENLESNNSCVFFENTT
                     IERINGDNNKFHAKIKTLDKNYDEEFAILGEQISKLNHKINKIRQYILSSKNGILSVE
                     KKITELKNQGQNVPVQYEKALKDFSLQNLELNKLQNEEKELLERKKSLQLELINLQKM
                     LFEATFINKSGKWTDMNEIKFSLLEPKEDIFYSSFVNESAKFIGIKKVIQNNQESIEI
                     HKKLDYEEKDIAWLSASKE"
BASE COUNT         7140 a         2669 c         3504 g         7338 t
ORIGIN      
        1 ctcatttaag ctaaggtttg ttcgtgaagc tacgcttaaa agctctcgag ctggattttc
       61 tgtataggca ataatttttt catccaaagc caaaactttc cccttgtaaa aaattaagaa
      121 tgtaattata gtcaattttt aatcaatttt agttaaaata gttctcttta tattttgaaa
      181 tttatgaaaa aatttaatga agagtttagt atttaaaaat tttattatca atgctttagg
      241 aattttattt tcaagaattt tagggcttgc tagagatgtt ttaatagcgc tttttttagg
      301 agcagggctt tatagtgata ttttttttgt ggctttaaaa atgcctgctt tttttagaag
      361 aatttttgca gaaggggctt ttggacaaag ttttttgcct aattttgtaa aagcgaaaaa
      421 aaaaggagct ttttgtgtta gtgtaatgat gcaatttagc cttatagttt ttttattttg
      481 tcttttggta agtttttttt cctctttttt tactaagctt tttgcttttg ggtttaacgc
      541 agatactata gctttagcgg ctcctttggt ggcgattaat ttttggtatt tgttttttat
      601 ttttttagtt acttttttag gggctatttt aaattataga caaaaatttt tcattacctc
      661 tttttctgcg gcattattta acttaagtat tgttatagct gccttttttg tggataaaaa
      721 tgcaccgcaa aatacacttt attatttttc ttatgcaacg gttttaagcg gggtggcaca
      781 gcttatttta catttgcttg ttttaaaaaa caatcctgta atccgtgcta tggctttaag
      841 tataaaattt aaaaaagcca aggcgaaatt acaaggtttt tatggcaatt tttttcatgg
      901 agttttaggt tcttctgcga ctcaatttag ctcattgctt gatacaacta tagctagttt
      961 tttaatgagc gggagtattt cttatcttta ttatgcaaat cgtgtcttcc aactccccct
     1021 tgcacttttt gctatcgctc taactcaagt ttcttttcca aaaattttaa aacatttaaa
     1081 aagtggtcaa gaaaatttag ccttaaaatt tatgcaaaga gcattagcgt ttttaagcat
     1141 tttgcttatt gcttctagta ttataggttc tgcgtttgct ttggaaattt caaagctttt
     1201 atttgaaaga ggaaatttca ctcacgaaga tagtgtgatt acggcttatg ttttgattgc
     1261 ttatcttata gggcttttac cttttggttt gcaaaagctt ttttctttgt ggctttatgc
     1321 aaaatttaaa caaaaaacag cagcttggat cgcggtaaaa tctttaatta tcagtgcttt
     1381 atgttctatg gcttttatat ttttgattaa agatgaaagt ttaaaggtta ttgcagtagc
     1441 actttcaagc tctattagtg ctttttattt gcttggagct aatatcaaag aatttggttt
     1501 taagaaattt tttgctttaa tatctattaa aatttgcttg ttggttatag ttgctttgat
     1561 tgtttttaca atcttactta ttttgattaa accttatatt ttaagttttt ttataggaat
     1621 ttttacaagt tttaaaggag ttttttaatg agattattag acagtgtagc aaaagagaaa
     1681 ataaaacttg ataaaaaaga tattagtatt tacttatgcg ggcctacggt ttatgatgat
     1741 gcacatttag gacatgcaag aagtagtgtt tgttttgatc ttttgcgtag ggttttactt
     1801 gctaatggca atagggtaaa atttgctaga aattatacag atattgatga taagattttg
     1861 aaaaaaatgg ctcaaagtgg tcaaacttta gaggaaatta cggaatttta tatcaaaagt
     1921 tatgaagagg atatgagggt tttaaatgta ttagatcctg attttaaacc tcgtgcaacg
     1981 cattatataa cagctatgct tgatttgatt aaaaagcttg ctaaggatgg gtttgtttat
     2041 actctagaag atggaattta ttttgataca agtaaagatg aaaaatattt aagcctatca
     2101 aatcgcaatt tagaagaaaa tatctctcgt ctaagtaatg aagtgcaaaa aagaaatgaa
     2161 agcgattttg tgctttggaa atttgatgaa aatttttacg aaagtgaatt tggcaaaggg
     2221 cgtccaggtt ggcatactga atgtgttgct atgattgatt ctatttttga aaatactctt
     2281 gatatacatg ctggagggat agatttgctt tttcctcatc atgaaaatga agctgcgcaa
     2341 tgtcgttgtg gatgtaagag aaaattagca aatatttggc ttcataatgg ttttgtaaaa
     2401 atcgatggtg aaaaaatgag taaaagttta aataatagtt tttttataaa agatgcttta
     2461 aaagaattta tgggcgaggc tttaagattt tatcttttga gttctcatta tagatctcat
     2521 tttaattatt ctttatcgga tttagaaaat gctaaaaaac gtttagataa attttatcgc
     2581 cttaaaaaaa gattggattt aggtgaaatt tctgattttg atgttttaaa tgatattgaa
     2641 ataaaaagcg aaattgctaa gcaaatttta gagattttaa atgatgattt aaatatttct
     2701 aaagccttag ctcttttgga tgattttatc agtagtgcaa atttagagtt ggataaagaa
     2761 agcaaaaata aaattttaaa acaaaatatc aaagaagctt taagcgagct agctaaaatt
     2821 tttggctttg gttttatgga tacaacttta tattttcaat ggggtgtaag caaagaagaa
     2881 cgagaagaaa ttgaaaagtt aattttagaa agaactgagg ctaagaaaaa caaagatttt
     2941 aacacagctg atgcaataag agagcgatta agtagtaaaa aaatcactct tttagatact
     3001 ccaaatggaa caatttggga gaaaataaat gcataatgag atgaatttaa aagaggtttt
     3061 aatacgcttt aagccctttt ataaaagata ttggaaacaa tttgctatag ctattttcgg
     3121 tatgatttta gcaagcggag gaactgctgg aagtttttat gctttagagc ctattttaaa
     3181 ttatattttc gttgaaaaaa atgaagcttt actttataca gtgccttttt tgctagtatt
     3241 gatgtatttt tttaaaaatc ttggaactta tttacaaagt ttttatgttt cctttatagg
     3301 aacagatatg ttaagagtat tgcgtgctag ggttttgaaa aatgttttac gcttggatat
     3361 ggattttttt aaacgctata gaagcggaga gcttgtaagt cgttgtacta atgatattaa
     3421 tgcacttcaa agcatagtat caaacattat tcctgatttt tttagagagc ttttaactgc
     3481 tataggactg cttgcggtag tcttgtatca aagtcctact ttggcttttt ttgctttagt
     3541 gattttgcct ttagctattt ttcctttggt atggtttgct aaaaaactta aaaaatatgc
     3601 aagaaatata caagaaacaa attcggattt actttcttat ttgggtgaaa ttttttcaaa
     3661 tattgaattg atcaaagcta atgataatga aaaaaaagaa agtgataaat ttgctaagca
     3721 taatgatact ttatgtaaat taaacctaaa atccgcacgt attgatgcac ttacaagtcc
     3781 tttaatggat atgatgggtt ctgttggggt tgctgtggtg attattgtag ggggtagaga
     3841 ggttatcaat ggttctatga gtgtgggaag ttttatcagt tttgtttcgg cactttttgc
     3901 gatatatact cctttaaagc gtctttcgtc tttatatgga aaacttcaag gtgctgttgc
     3961 ggcaagtgaa agaacttttt atttattgga tttagaacct caaattaaag gtggaagcaa
     4021 agaattaaaa aacattgaaa aaattagctt tgaaaatgtt gaatttgctt atgaaaatcc
     4081 gcataaaagt gttttaaaag gcgtaaattt tgattttgtt aaagggcaaa tgcttgctct
     4141 tgtagggaca agtgggggtg gtaaatcttc tattattaat cttttgatgt atttttatga
     4201 aaagcaaaaa ggtaaaattt tactcaatca agaagatatt agcactttta ccatagaaag
     4261 cttacatgct aaaataggac ttgtaacgca aaatatttat ctttttaatg atagttttgc
     4321 tgcaaatatt gcttatagcg aagagttaga agaagaaaaa gtcatccaag ctttaaaatt
     4381 ggccaatgcc tatgaatttg ttaaagaaat gggtgggatt tgggctgaag tgaaagaaca
     4441 tggtaagaac ttaagtggag ggcaaaaaca aagaatagca atcgctagag ctttatataa
     4501 aaatcctgat gtgcttattt ttgatgaagc aacttcagct ttggataatg aaagtgaaaa
     4561 agcaatagtt aaaactatag aaaatttaaa acaagataga ttgattttag tggttgcaca
     4621 tcgtttaagc actatagaaa atgcagataa aatagtagta ttggataagg gcaaggtatt
     4681 ggcaataggt aaagatgaag agcttttgca aacttgttct ttgtatcaaa aatttaaaag
     4741 caaagaaaaa acaaagccta gctttagtta attttagtta gaatttcaaa aaggattaaa
     4801 aaatggctta tgaaatgata aaacctttac tttttaagtt aaaccctgag catgcacatg
     4861 ctttggttga atatagctta agggctttaa gtgctagttt tccaggagct ttaagttttt
     4921 tagcacacaa atatatagtt gatgatgaga gtttaaggca aaatttactt ggacttgatt
     4981 ttaataatcc tgtaggttta gcaggaggct ttgataaaaa tgccactatg ataagacctt
     5041 tgagtgcttt aggatttggt tttttagaag tgggaacttt tactccaaaa cctcaagaag
     5101 gcaatgaaaa gccacgccta tttagacttg taaaacaaga aagtatacaa aatgctatgg
     5161 gttttaacaa cgaaggtgct gaaaagattg ctttaagact tgcaaaaact tatccttttg
     5221 ttttgccttt aggggtaaat atagggaaaa ataaaatcac tccaaatgat aaagccttgg
     5281 aggattattt tactttgttt agagatttta aggatttgtg tgattatttt atcgttaata
     5341 tctcatctcc taatactaaa aatttaagag agttgcaaaa tgatgatttt ttaaatacct
     5401 tgcttgaaga agccaaaaaa atcatttcta agcctatttt gataaaaatt gctcctgata
     5461 tgaaaataga tgatgcttta aatttatgtg aaaatgccat taaaaaaggt gcagatgggt
     5521 ttatattagc caatactagt gttgattata gcttgctaga taataatcgt acttttggtg
     5581 gtattagcgg aaggctgatt acggaaaaaa gtggtatttt tttcaaagaa gtagctaaaa
     5641 ttctttttgg caaaaccttg cttattgcaa gtggagggat tgatagtgct gatattgctt
     5701 atgagcgtat taaaaatggg gctaatttag tgcaagttta tacagctttg atttttaaag
     5761 gcccttcttt ggtaaaaaat atcaatcaaa atcttataga gcttttaaga aaagatggtt
     5821 ttttacacat tagcgaagct gttggggtaa atttaaaatg attgcttatg aaaaaattca
     5881 attaaaaaac aagcttgaag tttatgcttt acctgtaaat aaaaatagcg atgtgattag
     5941 cgttgatatt ttttataaag tgggttcaag aaatgagatc atgggaaaaa gcggcatagc
     6001 tcatatgcta gaacatttaa attttaaaag tactaaaaat ttaaaagctg gcgaatttga
     6061 tgagattgtt aagggttttg gtggtgtgga taatgcaagc acaggttttg actatactca
     6121 ttattatatt aaatgtgcga agaaaaattt agataaagct ttggaacttt ttgcagaact
     6181 tatggcaaat ttaaatttaa aagatgaaga atttcagcct gaaagagcag tggttttaga
     6241 agagcgtaga tggagaacag ataataatcc tttgggatat ctttatttta gactttttaa
     6301 tcatgcattt atgtatcatc cttatcattg gactcctata ggttttttta aggatataga
     6361 aaattggagc attgaagata ttaaagaatt tcatagtatt tattatcaac ctaaaaatgc
     6421 gattttactt gtaagtggcg atatagaaag taaagaagtt tttgagcttt caaaaaaaca
     6481 ttttgaaaag attaaaaata ctaggactat acctaaaatt cacacaaaag agcctaagca
     6541 agatggagta aaaagaatat atttgcataa aaactcagat actgaactat tagcccttgc
     6601 ttataaaatt ccaaatttca agcacaaaga tatacctgct ttaaatgctt tatccgagct
     6661 tttaggaagt gggaaaagtt ctttaatgag tgaaattttg attgataaat taaatttaat
     6721 caatgattat tatgcttatg ttaatgattg tatagatgaa aatttattta tttttatttg
     6781 taattgtaac cccaatgtta atgcagaaaa agtagaaaaa gagcttttaa aaatcattga
     6841 taaacttaaa atgggtaaaa tttctcaaaa agatttgcaa agagtgaaaa ataatgtcaa
     6901 aagtgatttt attttctcac ttaacaatgc tagtgcagtg gcaaatattt atggttcata
     6961 tctagcaaga ggggatatcg atcctttgtt aaattatgag aaagatatac aaaatttgga
     7021 attaaaagat ttgatttctt gtgctaaaaa atattttatt caagaaaatt caactacggt
     7081 aattctaaga aaggattcaa atggataaaa atattatcat tggggcgatg acggccctta
     7141 ttacaccgtt taaaaatgga aaagttgatg agcaaagtta tgcaagattg attaaaagac
     7201 aaatagaaaa tggcatcgat gcagtagttc cagtaggaac aacaggagaa agtgcaactt
     7261 taacccatga agaacataga acttgcatag aaatagccgt tgaaacttgc aaaggaacta
     7321 aggttaaggt tttagcaggt gcgggaagta atgcaactca tgaggcagtg ggtttggcta
     7381 aatttgctaa agaacatggt gccgatggga ttttaagtgt ggcaccgtat tacaataaac
     7441 ctacgcaaca aggactttat gagcattata aggctattgc gcaaagtgta gatattcctg
     7501 tgcttttata taatgttcca ggaagaacag gttgtgaaat ttcaacagat actattatca
     7561 agctttttag agattgtgaa aatatttatg gggtaaaaga agcgagtgga aatatcgata
     7621 agtgtgtgga tttgcttgcg cacgaaccta gaatgatgct tatttcagga gaagatgcga
     7681 tcaattatcc tatactttca aatggcggaa agggagttat ttcagtaact tcaaatttat
     7741 tacccgatat gattagcgct ttaactcatt tcgctttaga tgaaaattat aaagaagcta
     7801 aaaaaatcaa tgatgaactt tataatatca ataaaatttt attttgcgaa agtaatccta
     7861 ttcctattaa aacggctatg tatatagctg gattgataga aagtttggag tttagacttc
     7921 ctctttgtcc tccaagtaag gaaaattttg ctaaaattga agaagtgatg aaaaaatata
     7981 agatcaaagg attttaatga atacagaatt tcaaggaaaa actttagtaa tcagcggtgg
     8041 aactcgtggg ataggtaagg ctatagttta tgaatttgct aaagtgggtg taaatatagc
     8101 ttttacttat aattctaatg cacaaattgc tgatgaaatg gtacaagatt tggaaaaaaa
     8161 ttataaaatt aaagctagag cttatgaatt taatatctta gaacctgaaa cttataaaga
     8221 actttttgaa aaaattgatg cggattttga tagagtggat tatttcatct caaatgctat
     8281 catttcagga cgtgcggttg taggtggtta tactaaattt atgaaattaa aaccaaaagg
     8341 aattaataac atctttacag ccacagtaaa tgcttttgtt gtgggcgcac aagaagcagc
     8401 taaaagaatg gaaaaagtag ggggtggaag cattatttct atctcatcta caggaaattt
     8461 agtgtatata gaaaattatt caggtcatgg cacagcaaaa gctgccgtag aagctatggc
     8521 aagatatgcg gctactgaac ttggagaaaa aaatatccgt gtaaatgtcg taagtggtgg
     8581 gcctattgaa actgatgctt taagagcttt tacaaattat gaagaagtaa aacaggctac
     8641 tataaattta agtcctttaa atcgcatggg gcagcctgag gatttggctg gagcgtgtct
     8701 ttttctttgt tcaagtaagg caagttgggt aacaggacat actttcatcg ttgatggtgg
     8761 tacaactttt aaataaaaat taagaaaaat caatggattt ttcttaaaaa tatttttcaa
     8821 tcaagtttta atttccatcc taaaaaaaca cttaataatg caagtaaaaa aataaaattt
     8881 aaagtccaat tgccaaaacc tacaaaacct atagataata cgctgtaaaa aaatcctccc
     8941 acagctgaat aaatacaaat cgtacttaaa gatccatttt ctgccatttt tttacatggg
     9001 cagattttat aaaatttttt atcgttaaat tgatttttct ttttatttcc caaaaataaa
     9061 ccaaaaaagg caaaaagatt taaaaaaata aaagcatata ataaaatttg atctaattcc
     9121 attttaaata taccttaaaa gtatctaagc caagagggta gatggacttg ctcttctttt
     9181 aaagtagtct cttgtccatg tcctggtaaa agtttaaaat cttctttgta agtcataact
     9241 ttttctaagc tttgtttcat taaatttgca tctgaataag gaaaatccca tcttcctatg
     9301 cttctataaa ataaaaaatc tccactaaac atgatatttt tacctacaat ttctatcata
     9361 gtgcaacctg gtgtgtgtcc tggtaaaaag tgaaatttaa agtcaagtcc gcctatagaa
     9421 atgatatttt catcatcaat caaataatcc gctttgctag gcataaaacc ttgattaaaa
     9481 ggatcttcaa gcataaaagc atcattttta tgaatataaa tggggatttg ataggcttgt
     9541 tttacttttt cattatccca aacatgatcg taatgtccgt gagtgtttaa aatcgctaaa
     9601 ggatttttta catgtttttt gatgaaattt agtgcatcaa aaccaggatc aatgataatt
     9661 tctccatgct cactaaataa aatataacaa tttgtctcat aagctccaca agcttgtttg
     9721 ataatttgca ttttttacct ctttaataaa aaatttgcct taaataaata taattataca
     9781 ttaaattttt aaaaggcaag ctttatggat tggcaaaaga ttacggaaaa aatgtgtgat
     9841 tttatacaag aaaaagtgaa aaattctcaa agtcaaggtg ttgttttggg gcttagtggc
     9901 gggattgatt ctgctttagt agcaacgctt tgcaaaagag ctttaaaaga gaatgttttt
     9961 gctcttttaa tgccaactca aatttcaaat aaagccaatc ttgaagacgc tttaaggctt
    10021 tgtgcggatt taaatcttga atataaaatc atagaaattc aaagcatttt ggatgctttt
    10081 ataaagcaaa gtgaaaatac cactctagta tctttgggaa attttgcagc gcgtattaga
    10141 atgagtttgc tttatgatta ttctgctttg aaaaattctt tagtcatagg cacttctaat
    10201 aaaagcgaat tacttttggg ttatggtacg atttatggag atttagcttg tgcttttaat
    10261 cctataggat cgctttataa aagtgaaatt tataccttag caaaatacct taacttgcat
    10321 gaaaatttta tcaaaaaagc tccaagtgcg gatctttggg aaaatcaaag cgatgaggcg
    10381 gatttgggtt tttcttatgc aaaaatcgat gaaggtttaa aagccttaga aactaatgat
    10441 gaaaaacttt taagaacgct tgatccttct ttgattgcta tgctaaaaaa tcgcatgcaa
    10501 aaaaatactt ttaagggaaa aatgcctgaa attttggaaa tttaaacaat gagtgaagaa
    10561 aaaaattatg aactttggct tgataattat ttttttaagc ctaatttttg gcaaaaatgc
    10621 cttgctttta tacttttacc tttaagtgtg ttttatgctt tttttgcgat tttaaatact
    10681 ttttttcgta aaaaaatagt ttttaaaaag cctgttatta gcgttggtaa tttaagtttt
    10741 ggaggtaatg gaaaaacccc gctttgtaaa gctatagcaa gggaatttga tggcgttttt
    10801 atagtgctta ggggctataa aagaaagtct aaaggtttgt ttgttgttaa aaatcaaaat
    10861 gaaattttat gcaccttaac gcaaagtggc gatgaagcta tggagtatgc ttttgaagaa
    10921 aatatcaaag gtgtgattgt gagcgaagat agagtaaaag gtattgaaaa agcttttgag
    10981 ttgggagcta aaatcgttgt acttgatgat gctttttcta aatttcatat taaaaaattt
    11041 gatattttac ttgaaagcaa aatcaaacct tattttaatt ttaccttgcc aagtggagct
    11101 tatcgtttgc cgaaatttta tgaaaaaagg gctgatttta ttgcattaga aggcagggat
    11161 tttgtgcgtt attcttttgt aaaagaaaat ccaaaggctg ttttggtaac tgctattgct
    11221 aaacctttta gattgtatga gcattttatc aaagcaaggg cttgttattt ttttaaagat
    11281 cattatgagt ttaaaaaaga agaattagaa aatttgctaa aaaaacataa ttgcgataca
    11341 ctaatgctta cttttaagga ttttgttaaa gttaaagatt ttggttttaa atgtcaaatt
    11401 atagaattaa atatagaatt aaaagattca ttaagagaaa aaataaaaac ttatatcaag
    11461 gagtttgaac agtgaaattg gtcgagagta gaaatgtaaa aaatgtatca agttttaagg
    11521 aagctttgat taacccaaac gccccagaag gagggcttta ctcaccttta aatttgccta
    11581 tttttgaagg agaaaaatat gccaatttgt cttataaaga ttttgcttta aagcttatag
    11641 aaagttttgg ttttggcgaa gaagagcttt ttaaaaaggc tttgaaaagt tacgaaagct
    11701 ttgatgataa aaatacacct atttctttgc aaaaaatctc tgaaaaaacc tatattaacg
    11761 agctttggca tggacctaca agagctttta aagatatggc tttgcagcct tttggcgtgc
    11821 ttttaagtga attttcaaag gataaaaata ttttaattat ttgtgctaca agcggcgata
    11881 caggacctgc aaccctaaaa agctttgaaa atgcaaaaaa tgttaaagta gcttgtatgt
    11941 atccaaaagg tggcacaagt ggagttcaag agttgcaaat gcgagcttta gataaggata
    12001 acttgaaagt ttttgccata gatgaggatt ttgacgcagc gcaacgcact ttaaaagaat
    12061 tgcttttttc aaaagatttt caaaatgaaa ttaaagcttt aaattatgag ctttgcgcag
    12121 ctaattctgt aaattttggg cgtattttat ttcagattat ttatcattat tatgcgagtt
    12181 taaaactttt taatgagttt ttagaagaag tacaaatcat cgttccaagt ggaaattttg
    12241 gcaatgcttt aggagctttt tatgctaaaa aaatgggagc taaaatttca aaaatcaaaa
    12301 tcgcttcaaa cgcaaataat attttgagtg aattttttaa tcaaggcgtt tatgatttgc
    12361 gtgaaaaaag tcttaagaag actatttctc cagctatgga tatacttatt tcatctaata
    12421 tcgaaagact tttgtttgcg aaatttaaag ataaaagaac taaagaactg atgaatttgt
    12481 taaaaaatga gagatatttt aaacttgaaa aagaagaatt acaaagtttg caagaagatt
    12541 ttgaggcgga tttttgcacc gatgaagaat gtatgcaatt tatcaaacaa agtaaaattt
    12601 taattgatcc gcataccgca acttgtttta aaatgcttga tcctttaaaa cctagcatta
    12661 tcacttctac agcagaatgg acaaaattta ctccaagtat gataaaagct ttatatgata
    12721 gggattctaa gaatgaaaaa gaagatttaa aatttatagc taaagagttt aatgtccaag
    12781 ttaaagatga aattttgact ttatttgatt tgaaaaatag cgatgaaaag gtatttgaag
    12841 ccagaaatat aaaaaaagaa attttagatt ggatgcaaaa atgattatta ttcctgcaag
    12901 attaaaatca agtcgttttc atgagaaaat tttatgtgat ataggtggag tgcctatgtt
    12961 tgtggctact gcaagaagag taagtagcgt ggatgaagtt tgtatagctt tagacgatga
    13021 aaaggtttta agtatcgcta aagaatatgg tctaaatgcg gttttaacaa gcaaagatca
    13081 tgaaagcggt acggatagga ttaatgaagc ttgtaagaaa ctagctttaa aagatgatga
    13141 gattattatc aatgtccaag ctgatgagcc ttttatagaa tgtgaaaatt tattaaaatt
    13201 taaagaattt gcaagttctt gcttggataa aaaagctttt atggcgagtt gttataaaaa
    13261 aatcactcaa gaagaagcta tggatcctaa tctggttaaa gtgctttgcg ataaagaagg
    13321 gtatgctttg tatttttcaa gagctaaaat cccttatgaa agagaaaatt acgaggaaag
    13381 ttttaaaggg catttaggca tttacgctta tagtgtaaaa gcattaaggg agttttgttc
    13441 tttatcaagt tctgcgcttg aaagagcgga aaagttagag caattaagag ctatagaaaa
    13501 tggtaaaaaa atcaaaatgc ttgaaatttc aacaacaagc atggggattg atactaaaga
    13561 agactatgaa agggctttaa aaatttattt agaaaaataa ctccacccca aaacggaaca
    13621 gattttgctt atattatttt aatatattta gattgaaggc aaaaaaatct aaatcaagga
    13681 attaatatga gtatctttag tatcaatgat aactcaaact ataattctat actttcacaa
    13741 agtaaagcca ataaagaaag taaagaaaat tctaaaataa gttttgctaa tgctttttta
    13801 aaacaaaatg ctagtaagtt aaatgaaatt caaagtgcaa attcacaaac tctagcaaga
    13861 agtgaagtat taaattctac taatacaaca aatactagca ataacactaa ttttagtata
    13921 agtagtaaga caagttctcc taattatgat atatctagtg aatttaaaaa ctctatttat
    13981 actctaaaat ataaacaagc agatataagt aataatacag cctatggtta tagtgtagat
    14041 aaagatggct atatgggaag tgattttaac aaagctgcag gattgcctga agattttaag
    14101 atacataaat ctactttgga tgagatagag agagtggctg aatataatgt ttctgatata
    14161 agagaatatc taggtgtaga taaatattat tctaatatag atatggctga aaccataaaa
    14221 caatactaca atcttttttc taatgcttta ggtcaaagtt ttccaagtga taaaacaagt
    14281 tttagtgaag cagatataaa ttctatgcct agtggatatg ctgtaggtgg agataaatgt
    14341 atgaatttta atgatccaaa taatagaatg aatattacag gtttaaaaga tttttcaaat
    14401 tctttaattt caaatgttta taaaacccat gaacaagcaa aagaagctga tgatctttgg
    14461 gttgattcag gatatatgat tgatggatta ttgcctaaaa ctttaggttt atccttagaa
    14521 gaaatcaaaa atgtttctaa aggtgaagat tggcaattta atcctgatat gtcagtttat
    14581 ccacaaaatg aagatggaag ttattctaaa gaagctttgt ttatgagttt tttaaaagct
    14641 caaaatggac aacctgttga gagtccaaaa accacactta atccaacaat agaagcttac
    14701 aatagagcta tggctaaaga gagtttttca actactagtg tagatatagg tgatattatg
    14761 acaggcaaag tagattttgc aagtctattt aaatatctag ctagtaaaaa tggaaaatta
    14821 gaagggcaac tttatatgta tgaaaataac atttctaaag aatctgctat gggtaattgg
    14881 gctttagatg ctgaaattaa acaagccatt gccaatggct ggaaagcaaa acctagcacc
    14941 attaattcct acgctgattc tataatggat agattaaata atcttatagg acaaactagg
    15001 gcttaaagaa gtatttgcac gaagtcaaat tgaaaatgat gacatttgca aatacttata
    15061 cgaatcacat aaaactaggc gcatcgtttg aaaagagtat taaatctccg ttttttgtct
    15121 ctttagctag agtttgaact agctggcttt tttctttaag tataatggtt tttattttta
    15181 actctttttt gaaaatttca gcattgattt gtgcgctaat gatagcaaga tcaaaacact
    15241 cattgatgat tttagcaagt tttatatttt cttcttcgct tacttccact ataccaggac
    15301 ttactaaaac tttgcgtcct ttatagcttt tacaaagttc atagcttgtg ctcatacctt
    15361 taaaatttcc attaaaacca tcatctatga taaatttagg ctctcttgaa agcacttgca
    15421 agcgatgttc tacggagttt atatttaaaa cttgcttttg aattttttct agctttatac
    15481 caagataatg agcacaaagt atacaaacac aaagattttg cgcgttaaaa tcccctaaaa
    15541 tttgactttt aaaatcatag gatttatttt ctatatcgat tttaaattct aaaccttcaa
    15601 gacttgaatg aataagactt aatttatcat cataaaggct gatgagttta tcttcttctt
    15661 tttgggtgct agagtgtaaa aaagcctttt ctagtctttt ggaatttaag gcttcaagtt
    15721 tggttgaacg gatattttca acacttttaa aatactctaa atgtgcattg cctatctctc
    15781 ctactatgct gatgtgaggt tgtaaaaaac gagtgatttc atcaatatcg cctttaagtc
    15841 tagcacctgc ttcagctatg taaatttgag tatcttggct taaattggta ttgatatcag
    15901 caactatacc tagcaaggta ttgacagagc gtggtgtttt gtagctttta aagtcatctt
    15961 ttaaaagttc gtatagaaaa tttttaatac ttgtttttcc aaaacttgcg gtaatgagta
    16021 tgatttttaa attttcattg gctcttaatt tggctttggc ttgtttttta taatataaat
    16081 ttgtaaaaaa ctcataaatt ttaagactaa ataaagcaaa aggaaggcta aaaagattaa
    16141 aaagaaaaga aaaacgcaaa gcaagtatag caaaaatagc attataaaca aaaacaaaaa
    16201 caaaaaacca tttaacctta cttgtaaaaa caagcttttt atctatacct ttgctccaaa
    16261 aatacaaaat cggagtatgg atcaatgcaa aatatgccaa agaatataaa ggaaaagcta
    16321 agaataaaaa ataaggaata aataaaaaat acaaatgcca caaaggttta tgataatgaa
    16381 aaaacacgcg tttaaattta taagaatacc attgtaaagc actcataaga taaaaagcta
    16441 tacaaaaatt aaaaaataaa gaattgacaa aataaagagc attgataagc atttaaattt
    16501 ccttgatttt ttgagctatg aaagcagaat gttttaaaaa gaaaaaatga tccccctcta
    16561 aaggataaaa agtgctattt tttaaaagtt catgcatttt ttcaccacaa tacaaaggcg
    16621 tagcttcatc gctttttccc caaaaaatca agcttttagc cttttgcttg gcaaaaattt
    16681 cactaaaatc ctcatcaaca acctttttaa aggtttcata catcatagga ctaagattta
    16741 ctccatcttt actagcaaaa tagcgataaa atttccccaa accaaagagt tttaaaattt
    16801 taaaaatacg gattttaaaa cgcactttta gggatttttt agccaaaatt cccgcacttg
    16861 aaagtaagat tagagtgtct ttttcttttg cgagtagggt acttactttt ccaccaaaag
    16921 aatgtcccat gaaaaaacag acatcgagtt ttttttgttt taaaaaaagt tctgtgatat
    16981 tggcataatc ttgagtgttt aaaatttctt ccacgcttga atttccaaaa cccgctaaat
    17041 ccatataaat ttgacaaaaa tctttcaaaa aaggacaaaa actttgcttc ataagttctt
    17101 tattggctcc ccagccgtgt aagataagta tttgcggtaa ggaaagatca cctaaaattt
    17161 cataagaaat ttgataagtt ttgtttttat aagaaagttg agtttgagcc attttaagcc
    17221 ttttgatttt tgtagatatt ttctaaaagt tgcatggcat tttgtaagcg ttcaaattct
    17281 ttcatactaa gcattacagc ttcaaatttg ttatttttta aaataactat ttttccactt
    17341 tcgctttttt tgagtttttc cataatgggg ctaaaatttc ttaccacttc ggtggcagtg
    17401 taaatttcat cttgtttaaa agagagcatt tttcttccta aaatacgcta aattttatgt
    17461 ataatttagc gtattttgac ttaaaagctt ataattttcc tttttgtccg ttgatggagt
    17521 gaaggaagtt gtaattgatt tttatcattt tttcaagtga aatttgatca gctaaagcgt
    17581 ttaaagtggt attaaaatct ttaaaaagat aattagccaa agaaccagga tttgggttga
    17641 tttcatttaa atatacttca ttatccagta taaaaaaatc gcagcgtatt aaagcacctt
    17701 taaacaaagg attgtagatc tttttaaaac tgtctttgag tttttctttt aattcttcgc
    17761 ttaaatccgc ttctataagt tcattgtgtc ctgaaaagct aagatatttt tgttcaaagt
    17821 ctaaaaattc ttttttcttt ggctcttcta taatggaaaa aacaaactca tcattgatca
    17881 tacatcctgc aagattgtat tctttgatat tgtttttaaa ttcttctact acaagatcat
    17941 tgtcaaattc aaaacctaca tctttggcgt attctaaatc tttttcatct tttactatgc
    18001 taatacctat actacttcca agtcttgcag gtttgataat acaaggaaaa ctaagctttt
    18061 ctttagagtt ttgatttttt cttagcatgg tataatcaag tgtttttaca ccaacgcttt
    18121 tggcataaag tttggtaagt tctttgttga aagataatac actagcttca agcctaggtc
    18181 ctataaattt aatagaataa aactcaaata aagccgcaat ttttccatct tctccatctc
    18241 taccatggat aagattgatc acgcattcgc actctagttt attttctttt aaaaagcctt
    18301 tgctaaaaaa acctccttgt ttgatgaaga gttctttttc atttttataa gctttggtgc
    18361 taaaagtttt agaattcatt ttttcgcttg gaatgtgata aaatcttctt tcttcatcgc
    18421 aaaaaacaaa ttctaaattt tgattgataa cttttttaag tactacagca cttactatac
    18481 tgatctcatg ttcataagaa tttccgccaa aaagtattgc aaatttcatt ttattccttt
    18541 atcctagttt tttaagagct tctttgatga gttcgcttgt tcctgttgct tgagcacttg
    18601 ctaaaacact tatgattttt tcttgtttaa agcctagagt aagaagtgcg gctaaggctt
    18661 cgcttttatc atcgcttaca ttttcaagtt tggtttttgt gtcagaaagt tctactataa
    18721 tgcgttttgc actttttgga cctattccag gtactttttt aagcacgctt tcatcgccca
    18781 aacttaacgc tttgtaaaaa gaatttacat caagactaga gcataccgcc atagcagtat
    18841 ttgcacccac tccattgact tttaaaagca tttcaaacat tttttgttca tctttatcca
    18901 agaagccata aaatttatta gaatcttctt tgatgatttg agtgataaaa aactcatgct
    18961 tttcttgggt ttgaatttta gcagaacaaa aaagagaaat aaatatccca tagcttaaac
    19021 cactagcaca tttaacaatg ataaaagtag gttctttttt tgtgattatt ccttcgatgc
    19081 cgacaaccat gctatatcct tttcttcata atctaatttt ttatgtattt ctatactttc
    19141 ttggttgttt tgtatgactt ttttaatgcc tataaattta gcactttcat taacaaatga
    19201 agagtaaaaa atatcttctt taggctctag aagtgaaaat ttgatttcat tcatatcagt
    19261 ccatttgccg cttttattta taaaagttgc ttcaaaaagc attttttgca aattgattaa
    19321 ttctaattgt aaagattttt tgcgttcaag aagttctttt tcttcatttt gtagtttatt
    19381 taattcaaga ttttgtaaag agaaatcttt tagggctttt tcgtattgta caggaacatt
    19441 ttgaccttga tttttaagtt ctgttatctt tttttcaacg cttaaaattc catttttgct
    19501 tgataaaatg tattgtctta ttttatttat tttatgattt aacttagaaa tttgctctcc
    19561 taaaatcgca aattcttcat cataattttt atcaagagtt ttaattttag catgaaattt
    19621 attgttatcc ccgttaatgc gttctattgt ggtgttttca aaaaacacac aagaattatt
    19681 actttctaaa ttttctatat agattttatc agcttgtata tttccgccta aacttttttt
    19741 aattctcact tctttggctt tgattgttcc accttcgagc aaatctatat ttaaaatttc
    19801 ggcttccgca aatcctctat gagtttttat ataggcttgt ttggcttgaa ttttggcttt
    19861 agagtgtgta gtgccttcaa ttttcatttt agtggcatta agttgagtgt tgcttcctac
    19921 gcttccgact acatttaatt cttcacattc tatcccaaca ccagaattta cagcatcttt
    19981 tacttctgaa agaaatttta tattgatttt gacatttttg tctagtccag ctcttataat
    20041 ccctatattt ttaaaatcta ccccattaaa atctagttca ttggcaatat caaatttttc
    20101 accatcttgt actacataac ctttttttaa agctatatat tctgtgtatc catcttgctc
    20161 tacttgttta aaagccgaag aacaagaaaa tttaacttta ttttcatttg cggctaaaac
    20221 ttttaaggtg tgtaaattta agtcttttcc ttctttacct tgtttaaatt tggcgtgttt
    20281 taaaacaact tcattttcat caacaacaat aatacctgag cgtttttcat cgatagtgta
    20341 gtttttggtt ttttctttat aagtcaagat cagggattca tcttgacttt ctataggatc
    20401 aataccttgt gcaacggtga tttgtatagt tttatttaaa ggggtgtttt tatgttgatt
    20461 gcaaaaagac attaaatttt tcttaaaatc aaaaatgcgg atacctatta aaaatttaag
    20521 tttcaacatc tttttataaa tattttgcaa aagttctagt gctagttttt catgaaagtc
    20581 taaatttgta aaatcaattt gagcaactat tttggttaaa tttttatttg caaccagttt
    20641 gactgcttga g
//
LOCUS       DAEBKH010000014        19891 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.014, whole genome shotgun sequence.
ACCESSION   DAEBKH010000014 DAEBKH010000000
VERSION     DAEBKH010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19891)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19891)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19891
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.014"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..1696)
                     /locus_tag="KIL20_000344"
     CDS             complement(<1..1696)
                     /locus_tag="KIL20_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HBD2720402.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIAGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFTPELVRVKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFASEFILYKLRAQN
                     KLYTQDPSMRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDA
                     FAKMSKLDPSYEETLKDLALVLSHTNRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLAC"
     gene            complement(1719..3107)
                     /locus_tag="KIL20_000345"
     CDS             complement(1719..3107)
                     /locus_tag="KIL20_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HBD2720403.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYAFLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIAMRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIVFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTAILNGYWYLALFVALSSVIMLYAYLKILIHALFMKNDRVYNIKFSFIQNFILACC
                     VCVSTFAILLML"
     gene            complement(3097..4584)
                     /locus_tag="KIL20_000346"
     CDS             complement(3097..4584)
                     /locus_tag="KIL20_000346"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HBD2720404.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALILMLLSSLMIFLSFLFLKLEQKALVSC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLIALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYVNSPVLVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIENFSLRLREIVALVCIIVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            complement(4586..6376)
                     /gene="nuoL"
                     /locus_tag="KIL20_000347"
     CDS             complement(4586..6376)
                     /gene="nuoL"
                     /locus_tag="KIL20_000347"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HBD2720405.1"
                     /translation="MQNLALISLFSPFVAFLFASCFALSEKKQFVGIICSLLVALSAF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSVVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVARDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKFTAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHNEHPHEASKIALLAMSPLM
                     VLAIVAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGVILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPQFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQIIS
                     QKMIMPNSLNLMLRFLVAAFVILLILVWMV"
     gene            complement(6378..6674)
                     /gene="nuoK"
                     /locus_tag="KIL20_000348"
     CDS             complement(6378..6674)
                     /gene="nuoK"
                     /locus_tag="KIL20_000348"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HBD2720406.1"
                     /translation="MIEKYFFIAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA"
     gene            complement(6671..7189)
                     /locus_tag="KIL20_000349"
     CDS             complement(6671..7189)
                     /locus_tag="KIL20_000349"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HBD2720407.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAIMFFDASKEFKEQLKAKKSFFTLVVLSAIL
                     LLAMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     VLARKELTKEKQ"
     gene            complement(7186..7827)
                     /gene="nuoI"
                     /locus_tag="KIL20_000350"
     CDS             complement(7186..7827)
                     /gene="nuoI"
                     /locus_tag="KIL20_000350"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HBD2720408.1"
                     /translation="MKNYYLVDEKRKTPVSAWEKISQALRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVGNYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDADLLVVKTPNYYDVMIERALENQDTQEQGENK"
     gene            complement(7837..8835)
                     /gene="nuoH"
                     /locus_tag="KIL20_000351"
     CDS             complement(7837..8835)
                     /gene="nuoH"
                     /locus_tag="KIL20_000351"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HBD2720409.1"
                     /translation="MSDFAFFALEALIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFVSLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVAII
                     SYESVGALALIAIVMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYASMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALAVLL"
     gene            complement(8828..11290)
                     /locus_tag="KIL20_000352"
     CDS             complement(8828..11290)
                     /locus_tag="KIL20_000352"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HBD2720410.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKHWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRSGDSVDNSFKESMGKDAYAIWTKFQKSLIGPANGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFEELVKLFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDIIKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDVGIAKYSKNFISHIHKSGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKKIIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVIGSDFYFHKNATKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDKNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLNPKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            complement(11287..11979)
                     /locus_tag="KIL20_000353"
     CDS             complement(11287..11979)
                     /locus_tag="KIL20_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720411.1"
                     /translation="MIYDNALCFLDMLSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFSDLDEGYLSAESCFGEEEAGEVLAFLREAKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYELKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSLKAKLCLDENLQGTIAFLNYENNG
                     FDFIPIRIKEAK"
     gene            complement(11976..12203)
                     /locus_tag="KIL20_000354"
     CDS             complement(11976..12203)
                     /locus_tag="KIL20_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720412.1"
                     /translation="MRRIDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFIKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            complement(12200..13426)
                     /gene="nuoD"
                     /locus_tag="KIL20_000355"
     CDS             complement(12200..13426)
                     /gene="nuoD"
                     /locus_tag="KIL20_000355"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HBD2720413.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRIASHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCATLYKDTPPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            complement(13428..14222)
                     /locus_tag="KIL20_000356"
     CDS             complement(13428..14222)
                     /locus_tag="KIL20_000356"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HBD2720414.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKDDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFIADKNGFEVF
                     YQLLNLEKKLRVRIKTFVGVKERLQSVAHIFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            complement(14219..14722)
                     /locus_tag="KIL20_000357"
     CDS             complement(14219..14722)
                     /locus_tag="KIL20_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HBD2720415.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLI"
     gene            complement(14704..15093)
                     /locus_tag="KIL20_000358"
     CDS             complement(14704..15093)
                     /locus_tag="KIL20_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HBD2720416.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFVFIVLLGVGFLYAYKKGAFAWQSIK"
     gene            complement(15206..15871)
                     /locus_tag="KIL20_000359"
     CDS             complement(15206..15871)
                     /locus_tag="KIL20_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HBD2720417.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNINFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKSLIQDGLENFNLQKNDDLILEFFDFFNLKKQILEQKPYELSGGEATRVGIIR
                     ALVLNPKLLILDEITSALDIKTSKEILTFLYDYQQKNNISYIFITHQSDLFYKFNHKK
                     LKL"
     gene            complement(15864..16574)
                     /locus_tag="KIL20_000360"
     CDS             complement(15864..16574)
                     /locus_tag="KIL20_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD2720418.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTINFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILEELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLDEFLRYYNA"
     gene            complement(16571..17365)
                     /locus_tag="KIL20_000361"
     CDS             complement(16571..17365)
                     /locus_tag="KIL20_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD2720419.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPFLAPFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIVGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSKAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(17352..18296)
                     /locus_tag="KIL20_000362"
     CDS             complement(17352..18296)
                     /locus_tag="KIL20_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD2720420.1"
                     /translation="MLKRLVFSIFIAFFSTFLCFVLLHFSKGSIAYANGVNSQSKEFI
                     QRIEQNLGLDKPLLEQYKIWLFRALKGDLGVSFLSGESVLKLIKERIFNTFILGFGAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPSFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLAAFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(18296..19831)
                     /locus_tag="KIL20_000363"
     CDS             complement(18296..19831)
                     /locus_tag="KIL20_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HBD2720421.1"
                     /translation="MLRFLIFAMLLFVNLEAKIPKDTLIIAVENEIARINPAYSEDHD
                     AVINLVFSGLTRFDENMSLKPDLAKSWDVSKDGLVYDIFLRDDVLWHDGVKFSADDVK
                     FSIEAFKNPKNNSSVYVNFEDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPKHLL
                     ENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFKANEHFYLDKVKTPRLIIKHIFDPS
                     IASAELKNGKIDAALIDVSLLNIFKNDENFGILREKSADYRALMFNFDNEFLKDLKVR
                     QALNYAVDKESIVKNLLHDYAFVANHPLERSWANFKNFKIYKYDPKKAEDLLVGAGFK
                     KNKDGNFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKTRTLGHHGVGFTWNVYE
                     WSK"
BASE COUNT         7569 a         3723 c         2301 g         6298 t
ORIGIN      
        1 gacaagctaa catttgtttt ttattctcaa ttttctgacc tatatcataa gcactaaaac
       61 gcataaaaat atttgcagca ttgatacaat tatcagcttt tatcgcattt tttaaatcat
      121 taatggctgc tttctctaaa aattgagtag catttggaat ttttttactt tctataagat
      181 ctttataagc taaaatagca ctaaaatttc cctctttata ataaagtgca acatcttcat
      241 ctaaagcttt atttgcaata ttctcatctt tatttgcata ttgcttcatt aaatctgtat
      301 aacgctgatg caaaaagctt gcattattat cacctaaagc aaagaatacc tcatcacttg
      361 cttttttaat ttcatctaaa tacttaccat ctaaataatc atccatatat aaatcaaggt
      421 attttttagc atcactagat ctgttagtat gtgataaaac taaggctaaa tcttttaaag
      481 tttcttcata acttggatca agttttgaca ttttagcaaa ggcatcttca taaatacttg
      541 cacttatatc aaattgtcct ttttgattaa ataatttagc aagttctaaa gatcttggaa
      601 tatcttttcc aaaatattca ggattggctt ttaaaatggt attaatatac tctatagctt
      661 tatttacttg ctcatttgaa agcaaattct ttgccaaact catagctgct cttgcagcta
      721 aatctaaatt ttttgtatta aaataagtat tttcataaat atttacagct ttttcttttt
      781 catttaaatt ataaatatag tctgcataat caagttttga taactgagta aaataattat
      841 taggttgttc attatccaaa atcgacattg tatactctac atcagcacgc tgagctaaag
      901 cgatataagt tcttaacatt atatgtaaaa cttctgaaaa atttttatca cttgtaaaag
      961 tacgcgtcca atttttagca tcatcaatca tcttttctaa aatttgttga tcacgcatac
     1021 ttggatcttg agtgtaaagt ttattttgag ctcttaattt ataaagtata aattcactag
     1081 caaaaatact gccacgatat ctattgatag cattttgtgc atcaatcaca acttgattgt
     1141 aattagcctt atcgtattct tttttgatgc gtaaataagt attgatatct gcactttgag
     1201 gaataacaac aggatcagaa tttaaatcta aagctccaac ataaggcaaa ctctcatgtg
     1261 gaaaattgat attaaaatca agtccatcat agtctttaac gcgtactagt tctggtgtaa
     1321 aaataaaagt aaaagcctta cttttatgcg aacttgatga actgagttct ttatctatat
     1381 aaatattttg agaagtgtca aacattcttg cttgtatttt tggcaaaatg atcattttaa
     1441 ttttttgagc ttcttgtata aattttaaat caaaagcaga aaaactctga tcttttaatt
     1501 tattatcaac catacctgca atatcacatt caaaatgaac ttttgcttcg gtaataaatt
     1561 tttgacatgt aaattctaaa tcattactcg catgtaaaac tgcaaaagct tgattatttt
     1621 cgcgacccgt atttaaaaca agctcaaaag caaaagcatt taaaaaactt aataaaatta
     1681 aaaataatat tctcataaaa ataattatag caaaactctt ataacattaa caatatagca
     1741 aaagtgctta cacaaacaca acaagctaaa ataaaatttt gtataaaact aaacttaata
     1801 ttataaaccc tatcattttt cataaataaa gcatgaatta aaatctttaa atacgcataa
     1861 agcataataa cagaagataa agccacaaaa agcgccaaat accaatatcc atttaaaatt
     1921 gctgtattta aaatcataaa tttaccccaa aatactccaa aaggcgggat acctgctaaa
     1981 gaaagcacac taatgcttaa acaaaaaaca attaaaggtt ttttaaccaa aagcccattt
     2041 aaactctcat aagaattatt ctcataattg cttaaaatca taaatacagc ataatttgca
     2101 aaagcaaata aagtccaata tccaaaaata gcaagcaaaa ttccatcaaa attttgttct
     2161 tttaataaag gaatgcaagc taccaaaacc aaagaagaat gcactacaga actataagca
     2221 aacatttttt tgatattgtt ttgacttaga gccgcaaaag cgcctataag catagaaaaa
     2281 atcgctagaa ctattatgat atattcaaaa cctgtattat ttaaaaaatc aaacaaacga
     2341 ataaccacaa ccaacatggc aacttttggc acaactgaaa taaaagcaac caaatttgta
     2401 tgtgctgcat aatacacatc tttaagccaa aaatgaaaag gtgccaaaga aagcttgatt
     2461 gcacaaagaa caaaaatcat cactccggca cccaaaagca tgggatcttt ttgaaactca
     2521 ttttttaacg ctaaattagc agataaatct aaagttcctg tttttaaata aataaaagct
     2581 acagccataa caaaaaaccc agctcctaca gccgctacac taaagtattt tatcgcactt
     2641 gaaatagcat tatcacttcc acgcattgct attaaagtat aaagtgctaa agaagaactt
     2701 tcaagtccta taaaaataag cactaaattt gagcttgaaa ccatcaaaag caaagatgcg
     2761 atcataaata aaaataaagc ataaaattca ccttgatttt cttctttttg cattaaaaga
     2821 tataaaaatg aaaaacacaa aatcaccaaa aaagcataaa atgaaacaat atcattattt
     2881 aaagtagcca aaaaagcttt tgcttctaaa ccttgagcat ttgcattatt taaaatcaaa
     2941 aaagcactta caattaaaga taaagaactt ataccgatat aaaacgatcg atgaaatttc
     3001 caaaaaccag agcaaagcaa aagaactatt gcagttgtaa ttaaaaataa aaatggataa
     3061 gataagctta tatttaaaag ttctaaattt aaaaaattat ttaacatttg cctctcctat
     3121 tttagataaa aaatctaaag tattttgctc aacagctcta atattcattg tttttataag
     3181 attatccaca tctttttgta tgggctttaa aagtatattt ggcataagcc ctagtccaaa
     3241 aatcattact ataatgcaca caagcgctac tatttctcta aggcgtaaag aaaaattctc
     3301 tataaagctt tgtttttgca tgaaaaatat ttttctaaat actgcgaaca tataaattgc
     3361 tcctaaaata atcaccaaac ctgccaacaa agcgtaaaat aaattaatct ttgctatacc
     3421 taaaagaatt aaaaactctc ccacaaaaga aacagttaaa ggcaaagaaa cgcttgcgag
     3481 taaaattaac ataaagaaaa ttgaaaataa aggtgctttt ttggccaaag aatggtaaaa
     3541 agaaatatca taagtatgat atctttggta taaaagttca accattaaaa ataaagctcc
     3601 cgttacaata ccgtgtgcaa acatataaaa aaccgcaccg ctaataccca aagcatttaa
     3661 agaaaaaatt cccaaaatca tcacaccaag atgtgaaata gaactataag cgatcaattc
     3721 tttaatattt tctgctctat aagcaattaa agcattataa acgatactca ctatacataa
     3781 agctacaatt aaaggcataa aatacacact cgcatctgga aaaagtggta aacaaaaaag
     3841 caaaaatcca aaaggagcca ttttaaaaac tacaagcatt acagaaacaa gaacaggcga
     3901 atttacataa accttaggtg cccaagtatg aagtggaaat aaaggagctt tgatagcaaa
     3961 agcgataaaa aatgctccaa aaagtaaaag ttgctctgta aaatttactg ccgaggcatt
     4021 atttttccaa atttctaagt caaaagtgaa gatgtttaaa agttgataat ttaaataagc
     4081 ttgataaatc aatgctataa gcattaaaat tgaacccgca aaagcataga taaaaaattt
     4141 cacccctgct ctaaaatctt taccataaac tcccataata taaagcaaag gcaaaagaga
     4201 aaattcccaa aaaacataaa ataacaaacc atcttttgca ctaaaaagtc ccataattgc
     4261 aaattctaaa aagaatatac aagatacaag tgctttttgt tccagcttta aaaataaaaa
     4321 gcttaaaaat atcatcaaag aacttaaaag catcaatata agtgcgatac tgtctactcc
     4381 tacatgaaag ctaaaaaatt tcaaaatttt aaaagaaaga ttataatcaa agcttacccc
     4441 ttgtaaaaaa tccgcaaaaa tatccaaatt taaagccaaa atcataaaac ttacaacaac
     4501 gctaaaaacc ttaacgcctc cacgatttaa aagcaaaacc acaaaagcag aaattaaagg
     4561 aaaaaatatc aaataattta gcattttaca ccatccatac caaaatcaac aaaatcacaa
     4621 aagctgccac caaaaatcta agcattaagt ttaagctgtt tggcataatc attttttgtg
     4681 aaataatttg agaatacaaa gcaatttttt caactattct atcaaaaata taaagatcac
     4741 aatgctttaa aatcgcacat aaactttcat attttgaaac gataaattga tgatagaatt
     4801 gaggaataaa ataatcatta cttaaaagtt tgtgaatttt attttcttca atactttctt
     4861 taaaccaaga atttttataa gcaaaaatag ccaaaattac acccaaaata gctgctacac
     4921 tcgcacaaat cattacaatt tgattttgtg catcaataaa aactaatttt gtgcttaaat
     4981 attcaaaaaa actatgttca aaaaatcctg caacaatagc taaaaccatc aaaggactca
     5041 tagccaaaag tgcgatttta cttgcttcat gtggatgttc attgtgtctt gcaggggtaa
     5101 aaaataccaa cattaaaagt ctaaagctat aaaatgctgt taaaaaagct gcgattaaaa
     5161 gcactaaaaa aataccatgg tgaaaagaaa tgaaagaata tcctaaaatc aaatctttag
     5221 agaaaaatcc tgcaaaagga taaattcctg ctaaagctaa agatcctata cacatcaaaa
     5281 tagccgtaaa ttttaaaggt ttaaaaagtc cacccatttt tttaatgtct aatttatcat
     5341 tcatagcatg cattacattt ccagcaccta aaaaaagtaa agatttaaaa aaagcatgtg
     5401 tagctaagtg aaataaagct ataccataag ccccaagtcc tgcggccaca aacatatatc
     5461 caagttgcga taaggtagag taagcaataa tacgttttaa atccctagcc accaaagcca
     5521 tagaggctgc aaaaatcgct acaaaagctc caagtaaggc aataatataa gaaacctcag
     5581 gaactaaatc ataaagcgtg ctagcacgaa ttaccaaata aacccccgct gttaccatgg
     5641 ttgctgcatg gattaatgca gaaacaggag ttggccctgc catagcatca gcaagccaag
     5701 tgtgaaaagg aaattgtgca gattttccca tagctcctat aaataaacaa gttgcgatta
     5761 agatcaaagc attgtgatct aggctttgtg ccatggaaaa aacttcatca tattttaaag
     5821 ttcctgcttg taaataaagc caaaaaattc ctaaaagcat acccaaatcc gcaatacgat
     5881 tcataataaa agcttcatta gctgcaaaag aataagtatc gtttttatac caaaaaccta
     5941 tgagcaacca agagcaaagc ccaacgcctt cccaacctac gaaaagtcct aagaaattat
     6001 cactcataac taaaaaaagc atagaaaaga caaaaagccc caaataagca aaaaatttat
     6061 taaaaccttc atcatgagcc atataaaaaa tactataaaa atgcacacaa gtagctacaa
     6121 tacctacaac actcatcata gtgagcgaaa tggcatctat atcaaagcca aaatttactc
     6181 cagcaaacca ttcaaacaaa ctcacattaa aagcttcatt gcaaaaaagc aaatacaaag
     6241 aacaaaaagc actcaaagct actaaaagtg aacaaattat ccctacaaat tgttttttct
     6301 cactcaaagc aaaacaactt gcaaacaaaa aagctacaaa aggactaaaa agagaaatca
     6361 aagctaaatt ttgcatgcta agcctccact tcttttaagc tttttaattc caaagtgcct
     6421 tttcttctat accaaagcac acacaaagct acaccaacag ctacttcaca agctgctaca
     6481 cccatgataa aaagcgcaaa aacctgtcca tttaaatcat tgtgcatttt agaagctgct
     6541 actaaggcta aattagcact atttaataaa atttcactcg aaataaaaag catgatgaga
     6601 ttttgtcttt ttaaaatccc tacaagccct atgacaaaca ttaaaatagc tataaaaaaa
     6661 tacttttcta tcattgtttt tcctttgtta gctctttacg agcaagcact atagcacaaa
     6721 ctaaagcaat caaaagcaaa atagctataa actcaaaagc taaaagatat tttgaaaaaa
     6781 tcgctaaagc cagttgttta ttaaaatcaa acaaagcagg atcatttaaa ggcaaatccg
     6841 tgctgatatt ttggtattta aaacctataa gcatggccaa aagtaaaatc gcacttaaaa
     6901 ccaccaaagt aaaaaaactt tttttagctt taagttgttc tttaaattct ttagaagcat
     6961 caaaaaacat tatcgcaaaa ctataaagtc caagcacagc tccactataa acaataattt
     7021 gtatcacgcc taaaaactct gcatcaagta aaaaataaaa tcccgataaa aacaccattc
     7081 cacccgctaa agcagaaaga gaataaagca tatttttact taaaaccgca atgccaaaaa
     7141 aacctaaaac cactacacta aaaaatacaa aagccaaatt ttctatcatt tgttttctcc
     7201 ttgctcttgt gtgtcttgat tttctaaggc tctttcaatc atcacatcgt aataatttgg
     7261 tgtttttacc accaataaat cagcatcttt tctaaggctt cccgctcctt caaattcaac
     7321 ttgattttta agcttatcaa taggagttaa aaaatcttgc ttgtaaccaa aataagacct
     7381 ttgctcggcc gcattttcat actctgtgcc atgtactata gcaagttcag gacaaacctc
     7441 agcacaaaaa ccacaataaa tacaacgccc taaattaata ctataatttc ctactttttt
     7501 acgcccattt tcatctaaag aagtttccat tctgatacaa ttactaatgc aaattttttc
     7561 gcaaagccca caacctatac atctttcatt ttcgctttct ataaaacgca tcaaacgatg
     7621 aacagcacgg taacgattat caagctttac cttttcaaaa ggatatttaa tcgtagcgct
     7681 attatttctc ttaagtaatt ctctcatcat cacaaaaagc cctacaaaaa gctctagttt
     7741 aacgcttcta cgcaaagctt gtgaaatttt ttcccaagca ctaacaggag tttttctttt
     7801 ctcatctact aaataataat ttttcatatc aaactcctat aaaagaactg ccaaagcagt
     7861 gattaaaagg tttaaaaccg ctaaagggat taagattaaa tagcacattt tcatcacttg
     7921 atctggacgc aattgcggaa aagcagctct tgcccaaaaa taccaaaaga aaataaaact
     7981 tgattttact atcatcataa tccaaccagg aataatccaa aagctattaa aaccccctaa
     8041 aaacaaaaga gttaccaaaa tagctccagc tatcatagaa gcatattcac ctatgaaaaa
     8101 cataccccat cttaaacccg aatactccgt tccataaccc gctacaattt cagcatcatt
     8161 ttccgtcaaa caaagcggag ttctattagt ctctataaat aaagcaatta taaaaagcac
     8221 aaaagccaag ggctgtttaa aaataagcca agaaaaaaat ccatcgcttt gataattgtt
     8281 aatatccacc aaagaaaaag aacctacaag cattacaata gcaatcaaag ctaaagctcc
     8341 tacgctttca taggaaataa tcgctacaag ccctcttgca gcccctaaaa tcgaccattt
     8401 attattactt gcaagtccac ccaaaaacac cgcataaaag caaagtcctg aagtaccaat
     8461 gacaaaaagc aaagctacat taatatctgc cactataggc tgaatcaccc ttccaaataa
     8521 agtaaattca ggcaacatgg gaatagctgc taaagaaaca aaagcacaaa tagcagaaat
     8581 taaaggtgct atagcaaaaa taaatttttg cgaatttgaa gggattatat cttctttagt
     8641 aaaaagtttt atcatatcag ctacaagttg aataagccca aaaggcccta ccatatcagg
     8701 ccctatacgt ctttgaaaat aagctaaaac ctttctttca gcataagttg caagacctgc
     8761 taaactcgca aatattgcaa tgataataat acatttaatt aaagcctcta aagcaaaaaa
     8821 agcaaaatca ctcatggttt gctcctaatt tttctaaatt cgccacaaca aatctttcat
     8881 caaaaaagct tagcgtatca agtttttcat cgaaatacgg caagaaagct ccatttttta
     8941 tatccttatc cacacgcacg ctaaggctta attctttatc ttttatttta agttttacaa
     9001 gatctttatc ttttaaattt ttctctttag ctaaattttc acttacacct aaaaaaatca
     9061 cctcattaat cgcactagca cgatttgaaa atctaccaaa ttgatagcta ggattagcgc
     9121 tataaagcaa aatttcatct tcttttgggt ttaaattttc aaaatttgga gagatgaatt
     9181 cttttttagc aacttgttta aaacattcta aattaagctc atatcccctt ttacaatcac
     9241 ctgcattggt ataaaaatta tctaaatgat caaaatcaat cggagaaaaa cctttattta
     9301 tagggagtct cttagtataa tttatagtat attcctcatc aaaacctaaa gcattagcca
     9361 aatcatttaa aaaatatccc ttaaattcta aagcagcgtt agttggcacc actcttttat
     9421 cataatttaa aaaagttcct tcttgctgat ttaaactcgc actagctaaa tttgcatgct
     9481 cttcataaga aaaactaaaa tcaccttttt cattgtagcc taaagtcttg ccttcttgtg
     9541 tatttttatc caaatcacaa atcatagcca cacctaaggt attagtatgc gtaggattta
     9601 aaaagacttt aaaaggagta gtattttgaa tcaaagcaag tagtttagca agttttgtcg
     9661 catttttatg aaaataaaaa tcactcccta taacaagagt aaaatttgct tttttaagca
     9721 ataaatcttc taatttatct tcatctatac ctaaattttt agcaaaaaca gaacgttgca
     9781 cttctataat tttttttact tttttaggta cgactttttt tacttctttt tggatttcat
     9841 tgccttcttc atctttttct atgacttgtt ctacaacttc ttcgttgata ctttcttcta
     9901 tttctttatt ttcgctaaca aaaaactctg ctaaatgagt tttaatacct tcatcttgac
     9961 taaatttttg aagtaaaaaa tataaaattt gctcttcatc gccactttta tgaatgtgtg
    10021 agataaaatt tttggaatat tttgctatac ccacatcttc cataggatga aaataaagcc
    10081 ctgagccttt attcatcact aaagcattat tgattttata gctaagcgtt ggagcatcat
    10141 atcttaaaag cattccagcc acaaccaaaa aatcactttt tattatatct tgagtattgg
    10201 cactataaaa ctcgccagaa ttagcgataa attcttgtaa aaattcttta aatttcaaag
    10261 cttcttcatt gatcaaagaa agattaaatt tcttttttaa attttgtaaa atcaaagctt
    10321 cttcattggt aataaaacta ttaaatttaa tgtttttaat ttcatttttc tcaaaaagtt
    10381 tcacaagttc ttcaaaggct ttttcatctt tatccgcctc attttgcgta tcaaaagcaa
    10441 atcttgcagc cttatttaaa ctcgcaaagg caaaatcatt actcacacga taaatttttt
    10501 ctttttgatt actaatgccg ctttgcttaa tatcataata catcaactca caatcgcttg
    10561 aatgcggatt tgaagcaggg attcttttaa gttcccaaat atttgaagtg tattgaaatt
    10621 tcgaacctat caaagctcct gttggacaca cgcttgtaca ttctccacaa aatgaacaat
    10681 caagcgtatc accatttgca gggcctatca aacttttttg aaatttagtc caaatcgcat
    10741 aagcatcttt tcccatgctc tctttaaagc tattatccac actatctccg ctacgaggaa
    10801 cagtctttaa agcactttct ccgattttat ccttacaaac tgtaatgcaa cgctcacata
    10861 ctatgcaaag tgcgggatca taattaatca ttccccaatg tttatgtggt ttatgtgtgt
    10921 ctttaatcca atgcttttga acatttacgc ggcttttatg agtgaaattt tgcaattcac
    10981 actcgcctga tttatcacaa actccacatt ctaaaggatg attgatacaa taagcttgca
    11041 tgatctcatt tctttcatcc caaagatttt gcaaatcact ttctacaacc atgccctctt
    11101 ttgctttagt attacaagaa tatacctttt taccatcagc ttcaaccata cacatacgac
    11161 aagccaaagt aggactacag cctgaaagat agcaaatcgc tggaataaaa atatcatttc
    11221 ttcttgctat atttaaaata tattcgcctt cttcaaaggc gcaatctata ccattaatct
    11281 taactgtcat tttgcttcct ttatgcgaat tggaataaaa tcgaaaccat tgttttcata
    11341 atttaaaaaa gctatggtgc cttgtaaatt ttcatctaaa caaagcttgg ctttaagact
    11401 aaaatcttta gccaaaattt caacttcact ttgatctttg cattttgcaa tttgtaaaaa
    11461 ttgctttgaa caatgtaaat ttttatcttg taaatttgct ctaaaaagca ctaaaccgtc
    11521 ataattatct agttctttta gggtgtttaa tttggccttt ttaaaatcgc attcttcttc
    11581 atcgctatct aaaatcttta attcatattt tacgcttaag aaattcaaaa aatatttgat
    11641 attttcgcta tctttgtaag aatggatatt tttatctata attaaatact tagcctctct
    11701 taaaaaagca agcacttcac ctgcttcttc ctctccaaaa caagattcag cacttaaata
    11761 tccctcatct aaatcgctaa attgtccttc atcgcttaat ttacaaagca aagccaaaac
    11821 aaaactcaaa cttgcaattt cacatttata aaatttagct tttaaatttt tatcttccaa
    11881 acaagaaata ttaatgctat ttacacctat tttttcacat aaatttttgt ttttaaggct
    11941 tagcatatct aaaaaacaaa gagcattatc ataaatcata ctctctcctt ttttataaca
    12001 atagtccaat ctacttgatt aaatttcaaa gaatttaaaa gctcacagcc ttgttctttt
    12061 ataaaagaaa aacttttttc aacaggagaa aaatcgccga tttcaaaaag caccactaaa
    12121 acctcgcctt gttttgcttc ttttatgatt tgtgctaaat cttcaaaaag ttctttgctt
    12181 tttcttaaat ctattcttct catcgatcta tctcacctaa aactatattt acattaccca
    12241 taatggctac aacatcagct aaataagtac ctacaagcat ttcttcaaaa aatgcacaat
    12301 gccaataact aggcgttcta gcctttaaac gataaggtct tcctgtgcca tcactatgga
    12361 taaaaaagcc aagctcacct tttggacttt cagtaggcac ataaacttcg cctttagggg
    12421 gttttaaacc ttgagtgatt aaaacaaaat gctgcattaa agaataattc tgcgttaaaa
    12481 tttgttcctt tgaagcactt acatactcag gatgcgtagc taaaatttca ggtggagtat
    12541 ctttataaag tgtggcacat tgtctaagga ttttcaaact ttcacgaaat tcttgcatat
    12601 aaactttata tcttgcataa gaatcccctt gcgtagcata aggcacgcca aattcaactt
    12661 cattataaag caaataaggc tcttctttgc gtatatcgta ttttataccg cttcctctta
    12721 acatcacacc tgtacaaccc caatttaagg cttgctcttt agtaaccaca cctacatttt
    12781 cagttcttaa acgccaaatt ctattatcat ctaaaagatc ttcataatct tttaaatcat
    12841 ttggaaattt atcgcaaaat gcaagcattt cttctaaata attctcaggt aaatcaagca
    12901 taaccccacc tattctcata gaagaatgcg taagtcttgc accgcaatac ttttctatca
    12961 aatccaaaac atactcacgt tctctaaagc agtataaaaa cacactcatc gcaccaatat
    13021 caagcgcatg agtggcaagc caaagcaaat gtgatgcgat acggtttaat tctaaaagta
    13081 tcatccgtat gactgctgca cgacgtggaa tttctaaacc acaaagtttt tcgaccgccg
    13141 cacaataagc ataattattt gctgaagcag cgatatagtc cattctatca gtagtaggaa
    13201 taaattcttg ataaatcata ttttcagcca ttttttccat accacgatgc atataaccta
    13261 tacaaggacg cgcttttaca acttgctctc catcaagttc taaaataaga cgtaaatttc
    13321 catgtgctga agggtgttga gggcctaagt tgataatcat ttttgagtct tcttgctcaa
    13381 aagctatatt ttcataataa ggttttaact tgctaggaat ttgcatttta acgccttttc
    13441 tctaaaattt ttgcttcatc acgttttact ttttttacaa aagccacgcc ttcatcctct
    13501 tgatattctt gtttaaagga aatttccttc ttttgaccac cttttggcac ttcatgataa
    13561 agtcttgcaa aatttagcgt atctttatca tcagcaaaac cagaatctct ttgttcttcg
    13621 cccactactt cgcggtattc tttgccaaaa attttatcaa tctcatacca tcttgcaaac
    13681 tcatcgccct ttaaaggata agtttttaaa agcggatgtc caaaccaatc atcaggcatt
    13741 aaaatgcgtt ttaaattggg atgatttatg atgaaaattc caaacatatc ataaatttct
    13801 ctctcactcc aatttgctcc tttaaaaata tgagccacgc tttgcaaacg ctcttttacg
    13861 cctacaaaag tttttattct cactcttaat tttttttcta aatttaaaag ctgataaaac
    13921 acttcaaaac catttttatc tgctataaaa tcaatagcac ttgcttctgt aaaacttaaa
    13981 taacctaaag ttttaagcat ttgcaaggtt ttaacattgt cttctttttt gatttctatt
    14041 acccaaaaat caagctctac aaaggaattt aaaatttcta cttgagtttt taaaacttca
    14101 aaatcatctt taaaaacact ttcattaaca tcagatttta cagtgtgtgg tgcgtgataa
    14161 aatctatctt tgtagtaatt ttgagtttga gcattttttt tatcgctata ctttctcatc
    14221 atatcaacct tttaggtgcg attttacgac ttgctttttc tttgcggatc tttttttgca
    14281 aaatcatcaa agcaaactga aaactttctg ggcgtggagc acagcctggc acataaatat
    14341 ctacaggtat aattctatcc actccttgaa cagtagaata agtattaaac ataccgcctg
    14401 tattggcaca acttcccata gaaatcaccc atttaggatc aggcatttga tcataaagtc
    14461 ttcttgtaaa ttcagcgtgt tttttacata aagttcctgc gataatcatc acttcactat
    14521 gacgtggtga agctctaaaa atcgttccaa atctatcaaa atcatatctt gaacccccag
    14581 ccgccatcat ctcaatcgca caacaagcaa gtccataaga taaagcccat aaagaattac
    14641 tcctacccca ttgaactagt ttatcaacgc tagttaaaac tacgggcaaa ccacttgcat
    14701 aatttacttg atgctctgcc atgcaaacgc tcctttttta taagcatata aaaatccaac
    14761 tcctaaaagt acgataaaaa caaaaacttc taaaagtcca aaccaaccta aatctttaaa
    14821 aatcaaagcc caaggaaata aaaacacaac ttctatatct aaaagtatga agattaaggc
    14881 gatgatgaaa aattgagagt taatcttgtt agcttgttta acaggaatag gaccgcattc
    14941 ataaattcca agtcctaatt ttttgcgatt ttttgcggca aaattattac cgatttttga
    15001 agctaaaaaa accagtccaa aaaaaataac actagcaagt actagcatta aaaaaatacc
    15061 aaaataagga tgcgaagcat ctatatgaga catttattct ccttttttaa agcactttaa
    15121 tcactccaca acaaaaatta aatttacact tttctttatt ttactctaaa ctttctatat
    15181 tgaaacttat attaaaaaat attttttaaa gttttaattt tttatgatta aatttataaa
    15241 aaagatcact ttgatgggtt ataaatatat aagaaatatt atttttttgc tgatagtcat
    15301 ataaaaaagt taaaatttct ttagaagttt taatatcaag cgctgaagta atttcatcta
    15361 aaatcaacaa tttaggattt aaaaccaaag cacggataat acctacacgc gtagcttctc
    15421 ctccgcttaa ctcatagggt ttttgttcta aaatttgttt ttttagatta aaaaaatcaa
    15481 aaaattctaa aatcaagtca tcattctttt gtaaattaaa attttccaaa ccatcttgta
    15541 taagactttt gattttttta taagggttta aagccatttt ttgatcttga aagcagtact
    15601 gaatttgctt tcttaaaagt ctttgtttgt ttttatcaag cttgtgtaag ttaagatttt
    15661 cataccatac ctcaccctca cttggatctt ctaaaaaaca aagaattcta gctaatgtgc
    15721 ttttacctgc accactttta cctaaaatta ttaaattgtc attttcattt aaagaaaaat
    15781 tgatattatc aaaaataata tgtctttctt tttttaaata ccaatgcttt ttaagctcat
    15841 aaaacttact taaattacaa actttaagca ttataatacc ttaaaaactc atctaagcta
    15901 tataaatttg aactattttt ttctagcata agaatttcat ctgctaaaga atttaccaaa
    15961 tttaaatcat gagtaatgca aactaaggct gtggtatttt ttaattcttc taaaatcgat
    16021 atgatctttg aagcgttttc tttatccaaa gaagctgtga tttcatcaca aattaaaatt
    16081 tggggttgat ttaataatgc taaagctagg ctcacccttc ttgccatacc caaacttaat
    16141 tcattagcat aagaatgcca caaacgatca agattttcaa atcctaattt ttgaaaataa
    16201 gaaaaagcat aatcttttct ttctttttgt tttaattttg tatgagtttt taaaacaaga
    16261 tgacataaat ttccaatatc caaataagga taaagactaa gctctgcatc ttgcaaaaca
    16321 agtgccacct tagaacgaaa atttctaagc tcttctttgt taaaattaaa aatacaagaa
    16381 ttatgaaaac ttaattcatc aaaatttatt gtgaaattag agtctaaaag tcttaccaaa
    16441 gcttttccta acaaactttt acccactccg ctttgtccta gtatcattaa agttttacct
    16501 gtttttatat ctaaattaat atccttaagc aataaattat tcttcaaact gatatttaaa
    16561 tttcttacct tcaagatctt ataccccaaa ttttttgtaa aaaattaccc aaccataaaa
    16621 gaggtaaaaa caacaaaagc aagcttaaaa gtggaaaaag tatcatccac caagcaccta
    16681 taaaaactgc ttttgaagac tcactcaaaa gagtacctaa agttggaatt tcaaatccta
    16741 aacccagtcc aaaaaaactc aaagtagctt ctgtggctat agcatgaacg atattaaata
    16801 taaaaagtgt aaaaatcagt gtttttaaag caggtattaa atctttaaaa aaagctctaa
    16861 atttagttct tccaagcact atatttgctt tgtaaaaatc taaattttca agtcttttta
    16921 actcactttc tataattctt gctataaaac accaatgaat taaagcgatt aaaaaaatca
    16981 tcaagaacac atcagaagtt atcatacttt gaaaaaacat cataagtaaa aaagcaggca
    17041 aggctaaaaa aaactctaaa atacgcatcc aaaaaacata aaaaaaacat cgtgctaaaa
    17101 acaaataaca caaagcaaag ataatagaca ataaagatcc accaacacct acaatcaaag
    17161 aatttctcaa agcaaaaagc aaacgagaaa acaaatccct gcctaaaaaa tcagtcccta
    17221 aaatataagt aaaattagga gcttgatgca aattttctaa atgagtgctt aaaatatcaa
    17281 aaggagccaa aaaaggtgca aacaaggcgc ataaaaacaa aaaaattaaa ggcgcaagaa
    17341 tgataagaaa tttaaacaaa atcaagcctt cttaatctag gatttaaaat cctagctaca
    17401 atatcactta aaaatgtaaa aaatgctgca agcaaaacac taaaaaatat aagcgcaagc
    17461 acaacaggat aatctttaaa aataatactt ttaaaaagta aagacccaag cccctcgtaa
    17521 gcaaagacac tttctaccac ataagttccc atcataaaac ttaaagcact tcccccaaaa
    17581 taagctacaa taggacttaa agaatatttc aaaactaaaa aataaatatc tttctccctt
    17641 aaagccctag cgtataaatt ttgaataaaa atttgagaaa aactttcatt gataaaattt
    17701 ctagcaatcc ttaaaaataa cgccaaatgt gataaaacga gcaccaaaac aggcaaaatc
    17761 aaatgctcta aacgatttaa aaaatcatct tcaaagccta tatcactact tcccataaca
    17821 ggtaaaattt tccaaaaaat tccaaaaatc aaaacaaaca ataaagccaa aacaaaagaa
    17881 ggtaaagcaa aaaaattaaa agctaaaaaa gtgatgattt tatctataaa actttcttta
    17941 taataatatc ccaaaagtgc caaaaaaacg ctgagtaaaa ataaaagcat taaggcacca
    18001 aaacccaaaa taaaagtatt aaaaattctt tcttttataa gctttaaaac actttctcca
    18061 cttaaaaaag aaactcctaa atctcctttt aaagccctaa aaagccaaat tttatactgc
    18121 tctaacaaag gcttatcaag ccctaaattt tgttctattc tttgaataaa ttctttactt
    18181 tgtgaattaa ctccattagc ataagctata ctacctttgc taaaatggag taaaacaaaa
    18241 cataaaaaag tgctaaaaaa tgctatgaaa atactaaaaa ctaagcgttt tagcactatt
    18301 tactccactc ataaacattc caagtaaaac ccactccgtg atgacctaaa gtccttgttt
    18361 tgataccttt taaatcttta ttataaacca aagcaaaatc aagataggcc aagaaaataa
    18421 aaggaggatt ttcatataaa gcatctataa aatctttata atattttttt ctctcttcta
    18481 aatttgaagt atttcttgct ttttgcaagg ctatatccac ttttttatca tgataatgtc
    18541 caaaattcca accctcatca tttaaagcac tatcttgcga actttcaaat accctaaaag
    18601 tgtgaaaatc aggatctaaa ggacttcccc agcctattaa aaaactatct actttagaat
    18661 aatcaaaact tccagcaggt ttagccacca ccttgcttac aactcctatt tttctaaatt
    18721 cgctttgcaa aattccagct aaacttaccc ttaaaggatc attactcatc gcccaaattt
    18781 caaattctaa aattttccca tctttttcaa aatttccatc tttatttttc ttaaaacctg
    18841 cacctacaag caaatcctcg gcttttttag gatcatattt gtaaatttta aaattcttaa
    18901 aatttgccca agaacgctct aaagggtgat tagctacaaa agcataatca tgtaaaagat
    18961 tttttactat actttcttta tcaactgcgt aatttaaggc ttgtcttact tttaaatctt
    19021 ttaaaaattc attatcaaaa ttaaacatta aagcccgata atcggctgat ttttcacgta
    19081 aaattccaaa attttcatca tttttaaaaa tatttagcaa agaaacatcg attaaagctg
    19141 cgtctatctt gccattttta agctcagcac tagctataga aggatcaaaa atgtgtttta
    19201 taataagtct tggagttttt accttatcaa gataaaaatg ttcattggct ttaaattcaa
    19261 catattcacc ttttttccat tttacaaatt tataaggacc tgtacctata ggattttgat
    19321 taaaagagct tgtgtttaaa ttctcatttt caagcaaatg tttaggaagc attcctatgc
    19381 ttaaagcatc taaaaatgca ggataaggtt taaaaagtgt gattttcaca tgagaaggat
    19441 ttaaaatttc cacactttta atgtcttcaa aattgacata aacagaagaa ttgtttttag
    19501 gatttttaaa ggcttctata ctaaatttca catcatcagc actaaatttg actccatcat
    19561 gccataaaac atcatctctt aaaaaaatat cataaacaag cccgtcttta ctaacatccc
    19621 aagacttagc caaatcaggt tttaaactca tattttcatc aaaacgcgta agccctgaga
    19681 atacaagatt aattactgca tcgtgatcct cactataagc aggatttatc cttgcgattt
    19741 cattttcaac tgctataata agtgtatctt ttggaatttt tgcttctaaa ttcacaaaca
    19801 acaacattgc aaaaattaaa aatctcaaca taaaaaaacc tttttatttt aataacgcac
    19861 aaaattataa aacaaaaaaa ctcaactcgc a
//
LOCUS       DAEBKH010000015        19491 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.015, whole genome shotgun sequence.
ACCESSION   DAEBKH010000015 DAEBKH010000000
VERSION     DAEBKH010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19491)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19491)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19491
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.015"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            82..789
                     /gene="ubiE"
                     /locus_tag="KIL20_000364"
     CDS             82..789
                     /gene="ubiE"
                     /locus_tag="KIL20_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HBD2720422.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVVWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IEAGAQNLPLESQSLDILSISYGIRNVIERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKEEFILELKNAGFEMLD
                     YKSFSFGVSSMFIAKKL"
     gene            786..1949
                     /locus_tag="KIL20_000365"
     CDS             786..1949
                     /locus_tag="KIL20_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HBD2720423.1"
                     /translation="MTPTELNLKAKALLETHFEDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGDFLELCGSVSLYPESGRYQFIATSIKKAGFGDLE
                     AQFLALKERLQKEGLFDPLFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NHKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            1959..3035
                     /gene="serC"
                     /locus_tag="KIL20_000366"
     CDS             1959..3035
                     /gene="serC"
                     /locus_tag="KIL20_000366"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HBD2720424.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLSLNGVCEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFNHIPRVEFSDNADYAYICSNNTIYGTQYQNYPKT
                     KAPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGELDKVHEKNSQKAAMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            3032..3382
                     /locus_tag="KIL20_000367"
     CDS             3032..3382
                     /locus_tag="KIL20_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HBD2720425.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDTLFEKIGACKGDLIQIQIWLANMQDFDAMNEIYDAWIKNYPKPIRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3379..4353)
                     /locus_tag="KIL20_000368"
     CDS             complement(3379..4353)
                     /locus_tag="KIL20_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HBD2720426.1"
                     /translation="MLKASLKSIASYIPEKILSNADLEKMVDTTDEWITRRTGIKERR
                     IASENENTSDLGTKAALKAIKRANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIIGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSNLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGDLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(4346..5332)
                     /gene="plsX"
                     /locus_tag="KIL20_000369"
     CDS             complement(4346..5332)
                     /gene="plsX"
                     /locus_tag="KIL20_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HBD2720427.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNENATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIINKTLLLDVGANTDCKAENLFQFAIMGEVY
                     ARAIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKPSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINELIENELGKYNA"
     gene            complement(5338..5484)
                     /gene="rpmF"
                     /locus_tag="KIL20_000370"
     CDS             complement(5338..5484)
                     /gene="rpmF"
                     /locus_tag="KIL20_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HBD2720428.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            complement(5508..5861)
                     /locus_tag="KIL20_000371"
     CDS             complement(5508..5861)
                     /locus_tag="KIL20_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720429.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINSKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCNN"
     gene            complement(5862..6275)
                     /gene="ndk"
                     /locus_tag="KIL20_000372"
     CDS             complement(5862..6275)
                     /gene="ndk"
                     /locus_tag="KIL20_000372"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HBD2720430.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIDFFFKPNEIC"
     gene            complement(6388..6672)
                     /locus_tag="KIL20_000373"
     CDS             complement(6388..6672)
                     /locus_tag="KIL20_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HBD2720431.1"
                     /translation="MAVKITDICIACGSCIDECPVSAIVDDVNNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            6878..7474
                     /locus_tag="KIL20_000374"
     CDS             6878..7474
                     /locus_tag="KIL20_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HBD2720432.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
     gene            7593..8681
                     /gene="flhB"
                     /locus_tag="KIL20_000375"
     CDS             7593..8681
                     /gene="flhB"
                     /locus_tag="KIL20_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HBD2720433.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(8687..9430)
                     /gene="motB"
                     /locus_tag="KIL20_000376"
     CDS             complement(8687..9430)
                     /gene="motB"
                     /locus_tag="KIL20_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HBD2720434.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQALENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAP"
     gene            complement(9433..10209)
                     /gene="motA"
                     /locus_tag="KIL20_000377"
     CDS             complement(9433..10209)
                     /gene="motA"
                     /locus_tag="KIL20_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HBD2720435.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLIEFAIIARRDGLLALESRTNE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGRKMKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPKISQFDKG"
     gene            complement(10225..12864)
                     /gene="polA"
                     /locus_tag="KIL20_000378"
     CDS             complement(10225..12864)
                     /gene="polA"
                     /locus_tag="KIL20_000378"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HBD2720436.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEHKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISV
                     SQEGYEADDIIASFVRTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPHQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYENLEVQDLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLIQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMSENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFGLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNALLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAK
                     SYIEKYFENFTSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESI
                     NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            13025..14386
                     /locus_tag="KIL20_000379"
     CDS             13025..14386
                     /locus_tag="KIL20_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HBD2720437.1"
                     /translation="MTNQQIDGIADKNFNTPEGRKVFKKAVFSCWLGTAMEYADFALY
                     GLAAATIFSEVFFPEQTPVIALLLSFVTYGIGFIARPIGALFFGYLGDKHGRKNVMMS
                     TVALMGISTTLIGFIPSYAVIGVWAPICLVILRFMQGFGAGAELSGGTVMLGEYAPSK
                     RRGLVSSVIALGSNSGTLLASFVWLLMVQMDEASFKEWGWRVPFMGSILIALFAVYIR
                     FHVKETPVFEKQKNEMMKLRLNNEKHMKKDERSFWQRSRAFWTMVGLRIGENGPSYLA
                     QGFIVGYVTKILLLDKSVATTAVMIASLVGFLVIPLAGYLSDRFGRRITYRMFCLLLM
                     IYAFPAFMLLDSKNEIIVILTIIVGMSLASLGIFGVQAAWGVELFGVKNRYTKMAFAK
                     ELGSILSGGTAPMVASALLAYYGTWWPIATYFVLTAGIGFVTTFFAPETRGRDLNKIE
                     DAI"
     gene            14383..15390
                     /locus_tag="KIL20_000380"
     CDS             14383..15390
                     /locus_tag="KIL20_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HBD2720438.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILASKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFKRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLVPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYASKTRGTKGTWIHDALTIAYALDSSIADFDECYADVICDSSL
                     ARGMSWRCFKEPKMSMGVDLSTKNCVKILKNVDNTKLLKLIKERLLKGVCYENYESIT
                     T"
     gene            complement(15346..15789)
                     /locus_tag="KIL20_000381"
     CDS             complement(15346..15789)
                     /locus_tag="KIL20_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HBD2720439.1"
                     /translation="MFDFLYNDISYLGLFIVCFLSSTLLPLASEAFVLGFIKLDFNPN
                     LVLIVATLGNTLGSLSTYGLAYLGKQKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYAFIIFIANSF"
     gene            complement(15794..18619)
                     /gene="uvrA"
                     /locus_tag="KIL20_000382"
     CDS             complement(15794..18619)
                     /gene="uvrA"
                     /locus_tag="KIL20_000382"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HBD2720440.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSASDIVSEILKFPKGAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHCACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKGLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRAQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCQGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            complement(18692..19477)
                     /locus_tag="KIL20_000383"
     CDS             complement(18692..19477)
                     /locus_tag="KIL20_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HBD2720441.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNLINF"
BASE COUNT         6335 a         2997 c         3198 g         6961 t
ORIGIN      
        1 gaaaataatc aataataaaa ataaattttg caaattgctt aaaaaatcaa gtaaaaattt
       61 gaaaatttac aaaggataaa aatgcaaaaa caagaaaaaa ttatagaaat gtttaatcaa
      121 attgcaccta cttatgataa ggcgaataga attttaagct ttggagctga tgtagtgtgg
      181 cgcaaaaaag cttgtcaaag agtgatgagt ttatatttaa aaaaagattt aaaaatcgct
      241 gatattgcct gtggcacagg ggatatgata gagatttggc aagagagtgc tttaaaaatg
      301 gaaaaaaaca ttttaaatat taaaggtatt gatccaagta gtggtatgct aaatgttgca
      361 aaagaaaaat ttccgaatgt cgaatttata gaagcagggg cgcaaaattt gcctttagaa
      421 agtcaaagtt tagatatttt aagtattagt tatggcattc gcaatgttat agaaagacaa
      481 aaagccttaa gtgaatttgc tagagtgctt caaaaagatg gtattttggt agttttggaa
      541 tttacaaaaa gagaaaaggg tggatttata gcagcttgta gagattttta tcttaaaaat
      601 attttaccaa gtataggtgg gataatcagt aaaaataaaa gtgcttatga gtatttgcca
      661 aactctattg aaggattttt aagtaaggaa gagttcatct tagaacttaa aaatgctggt
      721 tttgaaatgc ttgattataa aagttttagc tttggcgtga gttcaatgtt tatagcaaaa
      781 aaactatgac gccgacagaa ttaaatctta aagcaaaggc tttattagaa acacattttg
      841 aggatatagt tttaagtgga gaaatttcaa aaatcacttt gcatggttca gggcattggt
      901 attttgattt aaaagatgaa agatcaagca ttgcttgtgc tatgtttaaa ggagctaatt
      961 taaaagtcgg atttaaacca gctgtggggg attttttaga gctttgtgga agtgtgagtt
     1021 tatatcctga aagtggtcgt tatcaattta tcgctactag tataaaaaaa gcaggttttg
     1081 gggatttgga agcacagttt ttggctttaa aagagcgttt gcaaaaagaa ggactttttg
     1141 atccactctt taaaaaatct ttgccaaaat ttcctaaaaa agtaggcatt atcacttcaa
     1201 aaacttctgc tgctttgcaa gatatgttaa aacttattca tcaaaaagaa tattttttgg
     1261 caaaaattta tatttttgat gctttaactc aaggaaataa tgctcctttt tctcttatac
     1321 aagctttaaa aaaagccgat gatatggatt tagatgttct tattatagca cgtggtggag
     1381 gaagcaggga agatcttttt tgttttaatg atgaaaattt agcaagagag atttttaaag
     1441 caaaaactcc tatcatttca gccataggac atgagattga ttatgttatt agtgattttg
     1501 ttgcagattt tagagctcca acgccctcag ctgctataga tactttgttt tattctaagc
     1561 tggatataga gcaaagtttg gatttaatgg aagaaaaatt gatgcaactt tggaatcata
     1621 aaatacaaaa ttatgaaaat ttgcttttaa atttaagcaa atttttcaaa tttaattctt
     1681 tgccaaaaat aatagatgaa aaaataaaac aaagccataa tatagaaaag caattaaatc
     1741 atctactagc aaatcaaatg cgttataatg aattaaaatt agataaattg caaaatgctt
     1801 atttgcaaca tgagaatttt tttaataaaa gcaaaaagtt tatttgtatc agaaaaaatg
     1861 gtaaaatagc aaatttagaa gatcttaaga gtgatgatat tgttatttta agttctcaaa
     1921 cttctcaaaa agaagcaaaa attttataag gatagattat gagaaaaatc aatttcagtg
     1981 cagggccatc gactttacct ttagaaattt tagagcaagc tcaaaaagaa ctctgtgatt
     2041 atcagggtag gggttattct ataatggaaa tttctcaccg cacaaaagta tttgaagaag
     2101 tgcattttgg agcacaagag aaagctaaaa aactttacgg gttaaatgat gattatgaag
     2161 tattattttt acaaggtgga gcaagtttac aatttgctat gattcctatg aatttgtctt
     2221 taaatggggt ttgtgaatat gcaaatacag gagtttggac aaaaaaagca attaaagaag
     2281 cgcaaatttt aggtgtcaat gttaaaaccg tagcaagtag cgaggaaagt aattttaatc
     2341 atattcctag agtggaattt agtgataatg ctgattatgc ttatatttgt tctaacaata
     2401 ctatttacgg cactcaatat caaaattatc ctaaaactaa agctcctttg attgtggatg
     2461 catcgagtga ttttttttct agaaaagtag atttttcaaa tatcgctctt ttttatggcg
     2521 gggtgcaaaa aaatgctgga atttcgggtt taagttgtat ttttatccgt aaagatatgt
     2581 tagaaagatc taaaaataaa caaattccta gtatgttaaa ttatttgact catgctgaga
     2641 atcagtcctt gtttaacacg cctccaacct ttgctattta tatgtttaat cttgaaatgg
     2701 attggctttt aaatcaaggc gaacttgata aagtacatga gaaaaattct caaaaagctg
     2761 ctatgcttta tgagtgtatt gatttaagca atggatttta taaaggacat gcagataaaa
     2821 aggatagatc tttaatgaat gtgagtttta atattgctaa aaataaagat ttagagcctc
     2881 tttttgtaaa ggaagccgaa gaagctggaa tgataggact taaaggacat agaattttag
     2941 gaggaattcg tgcaagtatt tataatgcgc ttaatttgga tcaggtaaaa accttgtgtg
     3001 aatttatgaa agaatttcaa ggaaaatatg catgataaag cgttttgatg agtgcgatag
     3061 aatgtcgcaa attattgttt ttgataaata ttttaaaact gcaggacaag tggcttttga
     3121 acctagcgga gatattaaaa aacaaactaa agaagcactt gcagaacttg atactttgtt
     3181 tgaaaaaata ggcgcatgca aaggagattt gattcaaatt caaatctggt tagctaatat
     3241 gcaagatttt gatgcaatga atgaaattta tgatgcttgg attaaaaatt accctaaacc
     3301 tattagagct tgtgtaggaa gtgctttagc agagggttat ttggtggaaa ttcaagcttt
     3361 tggaaagcta agagagaatt aaaaattctc tcctccaaat tttaaaagtg cagatcccca
     3421 agtaaaacca ccgccaaaag catctagtaa gattagatct ccttttttaa gtcgaccttc
     3481 ttcataggca tcattcattg ccataggtat agaagcagct gaggtattgc catatttttg
     3541 tacggtaatc acacattttt catcgcttag attgagtttt tcttggacgg ctttaatgat
     3601 gcgtagatta gcttgatgag gaataaaaag atcaatttct tgtgctaaaa tgttattttt
     3661 ggctaaaatt tctacaacat cattgctaag tgtgtttact gctattttaa aaacttcatt
     3721 gcctttcatt tgcatagaaa gtgtttgaca taggtttgat ttttgcgatc tttgagtcat
     3781 taaaagatct ccataattac cattgcttgc agtatgtaca tcaaggatgt gattttcatt
     3841 atccaagctt acaactccag cacccgcacc gtctccaaag agtatgcaaa tacttctgtc
     3901 attgtaatcc ataatggaac ttgttttttc agctcctatg attaaaacat tttttttcaa
     3961 accactttct accaaagctt tagcttgttc aagtaaatag ataaaaccag aacaagctgc
     4021 tgaaatatca aaagcactga tatttacgag tcctaaattt gaagcaattt tacaagctgt
     4081 tgaaggcata gtaaaataat caggacttaa agtggctacg agaatagcat caatatcttc
     4141 aggttttaaa tttgctcttt ttatggcttt caatgcagct tttgtgccca aatcgctagt
     4201 attttcattt tcactagcaa tgcgcctttc tttaatacct gtgcgtctag tgatccattc
     4261 atcggtggta tctaccattt tttcaagatc agcattgctt aaaatttttt ctggaatata
     4321 agaagctata cttttaagac tggctttaag cattgtattt cccaagttca ttttctataa
     4381 gttcattgat atgagattgg ctaaaattta tagcttgaaa aattgcattt ttaatagctc
     4441 tagaatcgct ttttccatga cttatgatca cacagccatt aactccaaga aggggtgctc
     4501 cgccatattc ttgccaatct gtgtgttttt ttaatttttt aaaagatggc ttcataagta
     4561 aagcacctat tttagaaata aaagattgtt ttacttcgtt ttttagaagt tgaaaaatag
     4621 ctgttgctac accttcgcaa gcctttaaaa taacatttcc atcaaaacca tcacagacta
     4681 aaacatctat ttcaccattg aaaatatctc taccttcagc attacctata aaatttggaa
     4741 tttttttcat aagctgatga ctttctttgg taagttcatt acctttgcat tcttcttcac
     4801 cattagaaag taaagcaagg cgtggttttt gaatttgcat gattgctcta gcataaactt
     4861 cacccattat ggcaaattga aataaatttt cagctttaca atctgtatta gctccaacat
     4921 ccaaaagtaa agttttgtta atgatatttg gcattaaagt ggcaatagca ggtcttgaaa
     4981 tgcctttaag tcttccaagc cttaaggtag ccaaagacat acttgctcca ctatgacccg
     5041 ctgaaactac agcatctact tttttttctt ttaataaatt aatagctttg tatatggttg
     5101 tttctttatt ttttaaagca tctgtggcat tttcattcat cgaaaaaatt tcactagctt
     5161 cttcgtattg tatatattgt tctaattttt ttggtattaa aggttttaga attttagaat
     5221 ttcccactaa gatagcgtta aaaggttttg cttctagcgc ctttaaaacg ccttctataa
     5281 tgggtttttc tccaaaatca ccacccattg catcaatggc aatgttaatc attgatttta
     5341 atattcctta gttgttggat tcgcacggtg aggcattttg tagcttccat ctttgtcttt
     5401 tataggcata ggaagactaa ctttatagtg agttctgcgt ttagctgcac gagttttgct
     5461 cactcttctc tttggtactg ccattttttc tcctttataa aatttaatta attattgcaa
     5521 tttatgcaat aaaaataatc acttaaataa gcttcaagct cgctgatagc aacttctatt
     5581 aaatcaatat gtccatcgaa aaattctata gtattgctca attcgtttgc ttcatcttta
     5641 aaaataccat cacttgcaaa aagttctaaa ttttctttaa tttcaagttc taactcagtt
     5701 ccacaactat cacaaggtct atagataaaa ccttgcataa tagcatttat tttaacaagc
     5761 ttagaattta tttttactaa atttccctca aaaatcatat tttcaagatt aagtttaaaa
     5821 ggatattcct ttgtattaat cttagaaaaa gggattttca tttagcaaat ttcatttggt
     5881 ttaaagaaaa aatcaatttc tatttttgca ttttccaagc tgtcacttcc atgaacagca
     5941 ttagcatcaa tactctcagc aaaatcggct ctaattgttc ctgctttagc ttctttagga
     6001 tttgtcgctc ccattaaatc tctatttttt aatacagcac cttctccttc tagtacagaa
     6061 acaacaacag gaccgctaat cataaattca accaagtctt taaaaaaagg tctttcttta
     6121 tgaacagcat aaaaattttc agcttgttct ttactaagtt gaactttttt cattgcagcg
     6181 attcttaatc cattgctttc aaaacgatct aaaatttttc ctataacacc ttttttaaca
     6241 gcatcaggtt taattataga taaagttttt tccatctttg taataactcc ttattttaat
     6301 aaagcttaaa attatacttg aatttgttta aagaaagtta aattaaaaga aaaagctagg
     6361 aatctctagc tttttaattt tttaaaatta tgcaaaaact ggagtgtccc cacttctcat
     6421 atcagcgcca atattatcac gacttggttg tcctgattct acagcactcc aaactataca
     6481 tccatctgtt gggcaagcac tagcacaagc gggttgatca ttatgtccta cgcattcaac
     6541 gcatttgttt gcataaacat aatatctatc ttcgccttct ggattgttaa catcatcaac
     6601 gatagcactc actggacact catcaataca agaaccacaa gcaatgcata tatctgtaat
     6661 ttttacagcc attttttctc ctttttaata ttaagattta aaagatttta gcataaaatt
     6721 cttaaataat gtaaattttg ataatcaaaa atttacatta tttgataata attataactt
     6781 tcttaaattt ttaatattat tttagatatt taaaaaaaaa taaagattta aacgatataa
     6841 tttcgttatc aataaaattt attatttagg agaaaatatg atagttacta aaaaagcttt
     6901 agattttact gctccagcag tattgggaaa caatgaaatt gttcaagatt ttaatcttta
     6961 taaaaacata ggtccaaaag gagcggtagt attcttttat ccaaaagatt ttacttttgt
     7021 ttgtccttca gaaattatag cttttgacaa aagatatcaa gaatttaaaa accgtggcat
     7081 tgaagtaatt ggaatttcag gagataatga attttcacat tttgcttgga aaaatactcc
     7141 agtaaatcaa ggtggtattg gtcaggttaa atttccgctt gttgctgact taactaagca
     7201 gattgctaga aattttgatg tactttatgc agaagcagtt gcccttcgtg gttcgttctt
     7261 gcttgatgct gatggaacag ttcgccatgc tgtggttaat gatttaccac taggtagaaa
     7321 tatagatgaa atgttaagaa tggttgatac tatgcttttt acaaatgagc atggtgaagt
     7381 ttgtcctgca ggatggaata agggtgatga aggtatgaaa gctaacccta aaggcgtggc
     7441 tgaatatctt ggcaaaaacg aagctaaact ttaatttctt agtataaagc ctctttacga
     7501 ggctttttct tcatttttat tctttaattg aaattcataa attttctact ataattttac
     7561 acacatatta aaatttttat ttaggctaaa atatggcagg cgaagatcaa gaaaaaacag
     7621 aagaacccac gtccaaaaag atagaagatg cgcgtaaaga aggtaatgtt ccaaagtctc
     7681 aagatgcggc agctattgta actttgataa ttggagtaac tataacttta tttatgatga
     7741 gttttatggg cgagagaatt gtaaatttat atagatacta tcaaagtttt attggtgttg
     7801 aatttgattt gcgtattatt caagccatta tgattaaaag catttttgag gttttaatta
     7861 ttcttgcacc tattgtttta agtattatga ttgctggggt tttgggaaat attatgcaat
     7921 ttggttttat ttttacaact aaacctatta tgccaaattt aggaaaaatc aatcctctaa
     7981 aaggtttaaa aaaccttttt tcattgaaaa aaattgttga aagtataaaa attattttaa
     8041 aagtgggtat tgtttttact atagctttta tagttttact taaatttatg caagagcttc
     8101 caagagttga gctttatact atggttgcac agcttacttg gctaagagac agagctattg
     8161 ttttagcagc tattgttata gttgcttttt taattattgc tgttttagat gtttttttgg
     8221 tgcgttttca gtattttaaa ggtttgcgta tgagcaaaca agaaataaaa gatgagtata
     8281 aacaaatgga aggagatcct caggttaaag gtagaattcg tagacttcaa atggaagctg
     8341 cgcgtcgtcg tatggttcaa gatgttgcag gtgcggatgt ggtgatcaca aacccaacgc
     8401 attatgccgt agctattcgt tatgatacaa gtaaagaaca agcccctagg gttgttgcta
     8461 aaggagtgga ttttctcgct cttcgcataa aacaagtagc ctatgaaaat aatgttgtag
     8521 tttatgaaaa tcctccttta gcaagagagc tttataaagc ttgtgatgtt aatgatctta
     8581 ttcctaggga aatgtttaaa gctgtagctg aggtgctagg atttgtttat aatacaaata
     8641 ataagagtcg tttagctggt caagtaaaaa aaggaaacta aaacttttaa ggtgctttag
     8701 ttcctatttt gttaataagc tcaagaaccg atttttgagt acttgtatct gctgtatcaa
     8761 ctttaaaata tatttctact ctattatttt ctagagcttg tggatttcca ttgataggat
     8821 tattaagccc gtagctttta atgctaatgt tttttaaatt tgctccacct tctataaaat
     8881 attttaatac attttccgct ctttggtagg cgagttcata acttcttata atagagtcgc
     8941 tattgtctgt atagcctcta atttctattt ttgcttgagg tggcaaatat gttgttagtt
     9001 cagccatacg ttttaaataa tcttgtatat cagctgaaac gatttgagcg ctacctcttt
     9061 caaattcaac tttagatgga aggttaagag caacctgatt gtcgctttga tctagagccg
     9121 cttgaagacg tttgatagtt tcttgctgcg tcatagtcat ttgttttaat gatttgagtt
     9181 catcactttc ttcttttgct gcgcctttat atttttcttg agttttactc tcttctttga
     9241 ctgtttgagt agaggtgtaa tcaaagattt taacaaattc agtttttaaa gcctctactt
     9301 tagcaggatt tgttttagaa attgcccaaa gagcaataaa aagtgccaaa agcaaactta
     9361 gaaagtctgc ataaggtaca gcccattttt cacctgcagg acattctgga catttatgtt
     9421 tcttggccat ttttaacctt tatcaaattg tgaaattttt ggatcatcgt gacttaagaa
     9481 attaaaaagc ttagcttcca aatctctagg gttcgcacct tctgcaattc cttttatggc
     9541 ttcagtgatg acaatttgct cttttacaag atccattccg ttagctttca tttttcttcc
     9601 ccaaggggca aaaagcgcat aagcaccaaa aatcccagta accgtagctg taaaagcacc
     9661 tgaaataccc gctgccattg cctgaggatt atctagtaat ttaagagcta gaataagacc
     9721 aaaaaccgca ccaacaagtc ccatagtagg gcaagtttct ccaaatacta tccaatattc
     9781 tgcgcattct ttataatgct cttcaagttg ttcggtttgt atttccatgc tttcgtgaat
     9841 ttcttcaaag cttttaccat ctacaagcat catcatagca ttttttaaaa attcattttc
     9901 aatctcattg gttcttgatt ctaatgctaa aagaccatct cttcttgcaa taatagcaaa
     9961 ttctattaac tgggctatcc tttcaggtag atttactcca gaacctttaa agacaacttt
    10021 gagttcttta taagctgctt ttacaatttt tttatgtgta gaagtcattg cacaaaatgc
    10081 agccgttggc ataactataa gaaaggaaga aagatgcaca acatgtaaag gattaccacc
    10141 ttctagtata tctcctactg aaatactagt aactgcaagc accattccca gtatggttga
    10201 aagatccatt aaatatctcc ttgattattt taaatcgccc caatttttgg cgatacttga
    10261 gcttgttttt aattttactt ttaattttac tatattttcc ataatatctc tagttttttt
    10321 cacaaaattt tcacataaat catcttttac ttcaaaaatt aattcatcgt gaatttgcaa
    10381 aataagcttt ttatcttcat ttaattcctt gttgatttct aacattgcaa gtttgattac
    10441 atcagctgct gagccttgta agattgaatt aatgctttct ctttcataca tggcaatttg
    10501 cataggtttt gcgttttcaa aatcaaaata acgcttgcga ccgcttaaag tagtgataaa
    10561 accattttgt ttagctttgt ttttaactgt ttcaaaatat ttcttaatac tagtaaaatt
    10621 ttcaaaatat ttttctatgt aagatttggc taaatgagct tctattttta aattttgact
    10681 taaagtttta tagcccatgc cataaataag tccaaaattt atactttttg caacacttct
    10741 ggtttcataa ttgctttctc caaaaatcat tatagctgtt cttgcatgta tatcttcatc
    10801 gttagcaaaa gcatttaaaa gtttttcatc ttcgctaaaa tgcgcaagca ttctcagttc
    10861 gatttgagaa taatcaagag agataaaact aaatccatct ttagctacaa agcaagattt
    10921 ataatctttt gcgtattgtc cgtgtgcagg aatattttgc aaatttggat ctttagatga
    10981 aaggcgtcct gtagcggttc cagtctgtaa aaaacttgaa taaatgcgtg aatttttatc
    11041 ttttaacgct agttttaaca aaggttcgca ataagtggaa taaagtttgg caagttctct
    11101 ataatctaaa attttggcaa ttacaggatg tttatctaaa agtgcattta aaactttttc
    11161 atcggtagaa tatcctgttt ttcctttttt tccacttgga agtttaagtt tttcaaaaag
    11221 tatatcacct acttgtttag gtgagtttag gttaaatcta tcctcacaaa gagtataaat
    11281 ttcttcactt aaatttttga tttcattttc aaattttttc ataaggattt caagtgcatt
    11341 tgtatcaagc tttatgccat tttcttccat catcataatg attttaatga aatcaaattc
    11401 gcagttttta gcaagttcta gcaaaggagt ttcaagattt tttaaaaaat aaagataaaa
    11461 tcttaaagtg atataagcat cttccgcagc atatttgcaa gctttttcaa gctctacact
    11521 tgcaaaattt tctccttttt taacaaggct ttcaaaatgt aaggtttcat aattaaaaag
    11581 tcttaaagct aaatcatcca tatttactct taaagaagga tttttaagcc atgctaaaat
    11641 cattgtatct gcgtattttt gaggtaaatt taatccaaaa ttgttttgaa tgattttaaa
    11701 atcatatttg agattgtgtc ctataacaaa atgattaaag attacttcta tagctttttt
    11761 ggcgctttgc aatgagattt gctcacctac tccaagatag ttatgagtta aaggcacgta
    11821 aaaagcttca ttttcactca tgcaaaaact aaaaccaaca atttttgctt cttttgtatc
    11881 aagtcctgtg gtttcggtat caaaagcaat aatactttct ttatcaaggg tatttaaaat
    11941 ttcaaaaagt ttgttttcat cttgtattaa agtggcttta aaacctaaat ttttatcttt
    12001 attatcagga ttttgacgca gttttttaag caaagtatta agttcgtaat gttctaaaat
    12061 ttcaagtatt tttaaaagag gttcttcatc aggataagtt gctttttcta taagatcttg
    12121 cacttctaaa ttttcataca aagaggctaa ttttttgctt aaaaatgcat tttccttacc
    12181 ctctaaaagc aaattacgac ttctttcgtt gcgtactagg gttaaatttt cataaattcc
    12241 ttctatacta ccaaattcat caagtaaggt tttagcccct tttgcaccta tacctttaac
    12301 gcctggaata ttatcagaac tatctccgca aagagctaaa aaatctctga tttgatgagg
    12361 ttttactccg tatttttcta aacacgctgc ttcatcatag tcgtttttag aaataggact
    12421 gtaaatgctt gttttaccat cttttatgag ttgataaaga tctttatctt gagtgataat
    12481 gcgtacaaaa atatccctat cttcacaagt tcttacaaaa gaagcgatga tatcatcggc
    12541 ttcataacct tcttgagaaa cgcttataaa acccattttt tctatcatct ctatgcaaat
    12601 tggaatttgt tctagaagtt caggtggtgg tggagtgcga ttttgtttat agtttggatc
    12661 aatttcgcta cgaaaagttt ttcctttgga gtctaatgca aaaacaatat aatcactttt
    12721 atgttcattt tttaagctat aaataaaatt tgcaaaaccg ctaatcattc cactagcttg
    12781 tccttgtgaa tttttaaaac cttttaatgc gtagtaaagt ctgaaaaaaa atccaaaagt
    12841 atcgataata gttaaagttt tcataataat ttcttcttta ataaaatata tttttaagct
    12901 gtattatttc aaaattttgc ttaaaatgtc tacaatttaa gatctttaag caaaaacact
    12961 gcaattttta gccataatta caaattattt ataaaaaaat atattaaaat ataaggataa
    13021 tgtaatgaca aatcagcaaa ttgatggaat tgcggataag aattttaata cacctgaagg
    13081 taggaaagtt tttaaaaagg cagttttttc ttgctggttg ggaactgcta tggaatatgc
    13141 agattttgca ctttatggtt tagcagctgc aacaattttt tcagaagtat tttttcctga
    13201 gcaaactcca gtaatcgcac ttttgcttag ttttgtaact tatggcatag gttttattgc
    13261 aagacctatt ggggctttgt tttttggtta tttaggtgat aaacatggaa gaaaaaatgt
    13321 tatgatgagt actgttgctt taatgggaat ttcaactact ctcataggtt ttattccaag
    13381 ttatgcagta attggtgttt gggcgcctat ttgtttggtt atattacgtt ttatgcaagg
    13441 ttttggtgca ggagctgaac tttcaggtgg aacagttatg ctaggagaat atgctcctag
    13501 caagagaaga gggcttgttt cttctgtgat tgctttagga tcaaatagtg gaactttact
    13561 tgcgtctttt gtgtggcttt tgatggtgca aatggatgag gcaagtttta aagaatgggg
    13621 ttggagagtt ccttttatgg gaagtatttt aatcgctctt tttgctgtat atattcgttt
    13681 tcatgtcaaa gaaacccctg tttttgaaaa gcaaaaaaat gaaatgatga aattgcgtct
    13741 taataacgaa aagcatatga aaaaagatga aagaagtttt tggcaaagaa gtcgtgcttt
    13801 ttggactatg gtgggcttaa gaataggtga aaatggacct tcttatcttg cgcaaggttt
    13861 tattgtaggt tatgtgacta aaattttact tttagacaaa tcagtagcta ctacagcagt
    13921 gatgatagct tcattggtgg gttttttggt tattcctttg gcaggttatt taagtgatag
    13981 atttggaaga cgtattactt atagaatgtt ttgtttactt ttgatgattt atgcttttcc
    14041 tgcttttatg cttttagata gtaaaaatga aattattgtg attttaacta ttattgtagg
    14101 tatgtcttta gcatctttag ggatttttgg tgtacaagcg gcttggggtg tagaactttt
    14161 tggggtaaaa aaccgttata caaaaatggc ttttgctaag gagctaggtt ctattctttc
    14221 aggaggaaca gcgcctatgg tggcttctgc tttgcttgcg tattatggca cttggtggcc
    14281 tattgcgaca tattttgtat taactgcagg tataggtttt gtgactacat tttttgcgcc
    14341 agaaactaga ggtagagatt taaataaaat agaagatgcg atatgagact tatcttagac
    14401 acagatatag gcaatgctat tgcaggagca aataccgatg atggtttagc gcttgctttg
    14461 attttggcat ctaaagaaat caaacttgaa atgctaagca cggtttgcgg taatgttcca
    14521 agccttgttg cctatagtgt ggctaaggat ttatttaaac gtttaaattt aaatattcct
    14581 gtttatttag gagcgaatga agccctaaaa gaaccaagta aagcttggcg tcaaagactt
    14641 gatgaaagtg taaaaaattt taaacttgaa tatctttggg aaaatataaa aagtcccgaa
    14701 attttagaaa atataaatcc tgatgcgatt tttaaaatgg gtgagttggt gagtaaaaat
    14761 cctaaagaaa tttctatttg tgcgatagga cctttgacaa atatcgctat gactatgaaa
    14821 atttttaaag attttgatat aaatcttaaa gagcttttta ttatgggcgg tagttttgat
    14881 atgccttatt atactaaaga tacaaatttt ggtttcgatc ctgaggcggc tagtatagtg
    14941 ttaaattcaa gagctaaaat tacactcgtg ccttataatg caaccatgca gactttatta
    15001 acacacgagg atttaaaaga gttgcaaggt aagaatattt tatgtgattt tatcgttgaa
    15061 actttaggtg tttggattga ttatgcttct aaaacacgtg gtacaaaggg aacttggata
    15121 catgacgctt taacgatagc ttacgcatta gattctagta ttgcagattt tgatgagtgt
    15181 tatgctgatg ttatttgcga tagttctttg gcaagaggta tgagttggcg ttgttttaaa
    15241 gagccaaaaa tgagtatggg ggtggattta agcactaaaa attgtgttaa aattttaaaa
    15301 aatgtagata atacaaagct tttaaaactt ataaaagaga ggcttttaaa aggagtttgc
    15361 tatgaaaatt atgaaagcat aacgacttaa ttttccaagt aagataaaaa atatagtttt
    15421 taaaaaagaa tatttcgcaa aaccaagtcc caaggcaaaa agatctccca ccaaaggtaa
    15481 aaaagtaaaa aaagcaaata tacttccaaa tttagcaaaa ttagcattga aattttctaa
    15541 ttttttcaag gatttgctaa agtatttttc taaaattttt tgcttaccaa gataagccaa
    15601 gccataagta cttaaacttc ctaaggtatt acccaaagta gctacgataa gcactaaatt
    15661 tggattaaaa tcaagtttta taaagcctaa aacaaaggct tcgcttgcca aaggtaatag
    15721 tgtgcttgaa agaaaacaca ctataaaaag tcctaaataa cttatatcat tatataaaaa
    15781 atcaaacata aaattatgat ttttgtgtat ttttaagctc taagtctaga taatatcctg
    15841 tgtaagaacg ggtttttttg tgttctttag cgactttttc cacgcttcct gtgcttataa
    15901 cttttccacc tttaactccg ccttcaggcc ccatatcgat gatataatca gcatttttaa
    15961 tcacatccaa attatgctct attacaaaaa ccgaattttt aagatcaacc aaatgttgta
    16021 aaactaagat gagtttattg acatcttcaa aatgcagtcc tgttgtaggt tcatcaagta
    16081 tataaagcgt ttttcctgta tcgctacggc ttagttcttt agcaagtttg attctttgtg
    16141 cttcacctcc acttaaggtg gtggcatttt gtcctagggt tagatagtct aaacccactt
    16201 ttactagagt gtctaatttt tgcttgattt taggaacggc tgtaaaaaat tcactcgctt
    16261 ctaaaacact catatttaaa atttcactga tatttttgcc tttatatttg atttctagcg
    16321 tggcatcatt gtagcgtttg ccctgacaag tatcacaaac taccataaca tcaggtaaaa
    16381 aatgcatttc tattttgatt tctccatctc cgctacactt ctcacatctt ccacctttaa
    16441 cattaaaaga aaagcgtcct gctttataac cacgcatttt agcttcttta gtggcggcaa
    16501 aaagatttct gatttcatcc atagcacctg tataggtggc aggatttgaa cgtggtgtgc
    16561 gtccaattgg gctttgatca agataaatga ctttatcaag tttttcaagt ccttctattt
    16621 gcaccccacc aagtttttta acttttttag cgcggtttaa ttcctcttgt gcaaaaggaa
    16681 gtagggtttg aagtatcaaa gaactttttc cagaacctga aactcctgtt atagcgacta
    16741 aattttgtaa aggaaatttt acgcttaaat cttggatatt gttaatattt acatttttaa
    16801 gttcaagcca ttctttttgt gctctgtttt gaagttgtga aatttgtttt ttaccattca
    16861 tataaagtgc agtttcgctt ttgcttttta aaagttcttt ataagttcca ctaaatacaa
    16921 cctcacctcc aaattttcct gcttttgggc caatatctac aataaaatct gcttcttcta
    16981 tagtcatttt atcatgctct acgacaatta gggtattgcc cttttgttgt aaatttctta
    17041 aagttttaat cagttttgca gtatctcttt catgaagtcc tatgctaggc tcatctaaga
    17101 catacatcac tccacttaaa ccactgccaa tttgtgaagc tatgcggatt ctttgtgctt
    17161 cacccccact aatcgttctt gcatcgcgcc ctaaggaaag ataacctagc cccacatcat
    17221 acaagaaaaa caatctttcg ttgatttctt ttaggatagg tttagaaata agtttttgtt
    17281 gctcgcttaa ataggaaaaa tttttctcat ctgcaaaaaa ggccgtacta tcttctatgc
    17341 tcatatctaa aatttcaccc aagccttttt tggctacttt cacggctaaa ctttcgggtt
    17401 ttaaacgatg cccaccgcag tctttacaaa ttttttcact catatattcg gctaaatctt
    17461 tttcatcttt tagcatttca taagccattt taaccacgcc ttcaaaggtg cgttttagac
    17521 gatttctttt ccaaagaaat tctatagttt tggcattacc atacaataca agacgttttt
    17581 gttcttcgtt taattgcata aaaggtattt tgataggaat ttcattttgt tcgcaaaagg
    17641 cgattaggaa tttataataa taacttttgt taaaaccata catgatttta acagcaccat
    17701 tttcgaggct taaattttca tcgataattt ttttcatatc taaagtataa cgaatgccaa
    17761 gtccatcaca agcttcgcat gctccttttg gagaattaaa agaaaagctt aaaggttcaa
    17821 gtggaacaaa ggaaatttta caatcaaaac aagcgcagtg ttcgctaaaa tgatagtgtt
    17881 tattaaggtt tatttcctca tgatttaaaa cttctatttc tatttctcca aagctttctt
    17941 gtaagccttt ttctatatcg cttgcaagac gagaaagtaa atcttcttga atttcaagcc
    18001 tatctatgac aagtttaatg gtgtgttttt tggttttggc cagttcaatt tcttcatcaa
    18061 gtcttactaa aactccatca atttgagctc ttacatagcc tttgttgcgt aaattttcaa
    18121 gtaaatctgc ataagttcct tttttttctc gtatgagtgg agcgtagatg atgatttttg
    18181 caccttttgg aaattttaaa atttcactga ctatatcact tgcactcata gatgagattt
    18241 tttgtccaca ttgatgacaa tgttgaatgc ccactcttgc atataaaagt cttagataat
    18301 cataaatttc agtgatggtt cctacagtag agcgtgggtt tttagaagtg gttttttgat
    18361 ctatagcaat ggctggggtt aaaccttcga ttttatcgac atcaggtttg cctaccttat
    18421 ctaaaaattg tctggcataa gcacttaaac tttctatata acggcgttgt ccttcggcat
    18481 aaagagtgcc aaaagcaagg gttgattttc cactcccact cagtcctgta aaaacaatga
    18541 gtttgttttt gggaatttca aggtggatat tttttaggtt attttctctt gcaccaatga
    18601 tttttatggt atcgttcata gtctttccta aacattaaat aaatttaaga ttttagcata
    18661 ataatattaa aagaacttgg ataaatccaa gttaaaaatt tataagattt agcttattaa
    18721 gtaaagagtg ggtggttcca agtattgata aggcatatac gcaaagtaaa atttttctat
    18781 gagctgaaat atgcattttt tctatgattt taattcctat aaaaactcca accatagaag
    18841 ctatacctac tagtattcct ttatgaataa cttcagagtc tataactcca gaatttgaaa
    18901 aagatataat accagagact gaagcaaaaa taacaaaaaa caaggataaa gaaacaactt
    18961 ttttactatc atagcctaaa aaataagcta aaatcggagc aattaaaagt ccaccaccaa
    19021 ttcccaaaga aatagcaaaa ataccagtaa aagctccagc aataaataaa atgacattct
    19081 ttacccaaac gcttctttga ttttgcacaa tgttttcttt aattccaaaa gcatatttga
    19141 taaaaaatat acaacttacc gccaaaaata cgctagtaag agctacatca cttaaagctt
    19201 ttaaaagcat tccgctaaag cttgccccta tgagtcctcc aaaacctatc ataataccat
    19261 ctttaagatt tagatttttt ttcttataat taatataaga gccaaaaact gctgcaaaaa
    19321 tcatttgcaa tactgaaatt ccgatagcat ggtgagcact tgctccaagt gcgaacatag
    19381 aaggaacgat aatcatacct ccaccaatgc caaaaagtcc agaagcaata cctgaaatga
    19441 ttcctatgat tagataaggt aaatctgtga tttccatagc ttttcctaaa a
//
LOCUS       DAEBKH010000016        19208 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.016, whole genome shotgun sequence.
ACCESSION   DAEBKH010000016 DAEBKH010000000
VERSION     DAEBKH010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19208
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.016"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..92)
                     /locus_tag="KIL20_000384"
     CDS             complement(<1..92)
                     /locus_tag="KIL20_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD2720442.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILITNAT"
     gene            complement(79..744)
                     /locus_tag="KIL20_000385"
     CDS             complement(79..744)
                     /locus_tag="KIL20_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD2720443.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQAAKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(814..1992)
                     /gene="trmB"
                     /locus_tag="KIL20_000386"
     CDS             complement(814..1992)
                     /gene="trmB"
                     /locus_tag="KIL20_000386"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HBD2720444.1"
                     /translation="MPNFKSKKIKEINLPYSKDDVEFLWLAKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSKLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKVQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLTQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFVFKEPFKIQENIKAINELKEILKVQFKI
                     "
     gene            complement(1992..3227)
                     /locus_tag="KIL20_000387"
     CDS             complement(1992..3227)
                     /locus_tag="KIL20_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HBD2720445.1"
                     /translation="MMKRFRLGFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     EPSQVVSSTSKALPPQVEHLSASTDGSNKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAGLRSEPSSKVKAAQ"
     gene            complement(3172..4140)
                     /locus_tag="KIL20_000388"
     CDS             complement(3172..4140)
                     /locus_tag="KIL20_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HBD2720446.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIISIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINIVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRHILGDSLYGYKGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFKQINLGENDEKISLGFLLEFFNSFA"
     gene            4218..5318
                     /locus_tag="KIL20_000389"
     CDS             4218..5318
                     /locus_tag="KIL20_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HBD2720447.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGIHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            5372..5448
                     /locus_tag="KIL20_000390"
     tRNA            5372..5448
                     /locus_tag="KIL20_000390"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5406..5408,aa:Ile,seq:cat)
     gene            complement(5556..5631)
                     /locus_tag="KIL20_000391"
     tRNA            complement(5556..5631)
                     /locus_tag="KIL20_000391"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5596..5598),aa:Phe,seq:gaa)
     gene            5772..7115
                     /locus_tag="KIL20_000392"
     CDS             5772..7115
                     /locus_tag="KIL20_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HBD2720448.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLTMRFALEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGLIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKMVVVASIFLIFSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGTLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            7126..7776
                     /locus_tag="KIL20_000393"
     CDS             7126..7776
                     /locus_tag="KIL20_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HBD2720449.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(7773..8444)
                     /locus_tag="KIL20_000394"
     CDS             complement(7773..8444)
                     /locus_tag="KIL20_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HBD2720450.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGYKASMEYKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTSNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSRYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPETKIKIPYYILQNYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(8450..9076)
                     /gene="upp"
                     /locus_tag="KIL20_000395"
     CDS             complement(8450..9076)
                     /gene="upp"
                     /locus_tag="KIL20_000395"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HBD2720451.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEA
                     SKDFSLKEIEISTPIQKTTVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIEACNFLKSQGVKKIKFISIL
                     AAPQGLKKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(9073..10308)
                     /locus_tag="KIL20_000396"
     CDS             complement(9073..10308)
                     /locus_tag="KIL20_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HBD2720452.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSYDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEINVHSAEEIVNFCKALAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKEVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVVRLRKDAIVGTGRSDYANQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFDEKAYFESLK"
     gene            complement(10310..11701)
                     /locus_tag="KIL20_000397"
     CDS             complement(10310..11701)
                     /locus_tag="KIL20_000397"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HBD2720453.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFKGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVKFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNAKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYGKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFVNENNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLGVDEC
                     KKRIENFLKVRGK"
     gene            11766..12581
                     /gene="salC"
                     /locus_tag="KIL20_000398"
     CDS             11766..12581
                     /gene="salC"
                     /locus_tag="KIL20_000398"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HBD2720454.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKVL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKTNLKSK
                     NQSYEQFRVNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINTNI
                     YLSNNPQTLENIKNTKKTILKPQNTSLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(12619..13950)
                     /locus_tag="KIL20_000399"
     CDS             complement(12619..13950)
                     /locus_tag="KIL20_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HBD2720455.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(13952..14407)
                     /gene="accB"
                     /locus_tag="KIL20_000400"
     CDS             complement(13952..14407)
                     /gene="accB"
                     /locus_tag="KIL20_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HBD2720456.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            14556..15116
                     /locus_tag="KIL20_000401"
     CDS             14556..15116
                     /locus_tag="KIL20_000401"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HBD2720457.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDNVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            15165..16169
                     /gene="pseB"
                     /locus_tag="KIL20_000402"
     CDS             15165..16169
                     /gene="pseB"
                     /locus_tag="KIL20_000402"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HBD2720458.1"
                     /translation="MFNKKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSAAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKLVDKDNDFSINALGEKGQKVKDGFSYSSDNNPLWTSEKELLEIINHTEGF
                     "
     gene            16171..17301
                     /gene="pseC"
                     /locus_tag="KIL20_000403"
     CDS             16171..17301
                     /gene="pseC"
                     /locus_tag="KIL20_000403"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HBD2720459.1"
                     /translation="MLTYSHQNIDQSDIDALTKALKDEILTGGKKVDEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALGIKEKIVLTTPLTFAATANAALIAGAKVEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFGGNSVEIDEISSLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELIDKIKLLRSHGIVKKRLWDS
                     DMVELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKNY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGVGVQVHYKPTYEFSFYKKLLGEIKLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCG"
     gene            17294..18604
                     /locus_tag="KIL20_000404"
     CDS             17294..18604
                     /locus_tag="KIL20_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HBD2720460.1"
                     /translation="MDKLDFRSQDFSQTGKAMYELACELFPIPRSITGQGFRDSLEIL
                     NKTLGGGGILKFHSIKSGTKVFDWIVPDEWNAKEAYIITPEGEKICDFKKHNLHLLNY
                     SEAIDKEIELEELQDHLYSIEEMPDAIPYVTSYYKRRWGFCLTHNERKKLKKGKYKVY
                     IDAKHDENGVLDYADFILPSTQNSKDEILISTYLCHPSMANNELSGPVVAIFLAKWLL
                     GLKERKYNYRFVIIPETIGSIVYLSKHLEHLKKYVKAGFVLSCLGDDHAYSLIHTPKE
                     NTLSDKVALHTLKNKENFKAFSFLDRGSDERQYNAPLVNLGIVGVCRTRYLEYEQYHT
                     SKDNLNFISEKGLMGGLQSMQEMILNLEINAVYKNTIVCEPNLGKRGLYHTLSTANDI
                     PLACNFLAYCDGENDIIDIANILNMQAYEFKELLKKIKFYGLVK"
     gene            18601..>19208
                     /locus_tag="KIL20_000405"
     CDS             18601..>19208
                     /locus_tag="KIL20_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside N(3)-acetyltransferase"
                     /protein_id="HBD2720461.1"
                     /translation="MKYFLEHNDKKYSDKDLIDAFYQLGIKRGDILCVHTELFKFGIP
                     LLSRNEFLQTILNCFFEVIGQEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNEYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLAKENGKYIIFGLNEGHA
                     LVHYAEEKNTTFCRYFKNFKGILINEKRKEKTITIDYYVRDL"
BASE COUNT         6419 a         3299 c         2810 g         6680 t
ORIGIN      
        1 aaagttgcat ttgtaatcaa aataaattca aaagcaaaca tcataaaaag taaaggtaaa
       61 attaaagata aatgtgtttt aaaaaatttc attcattttt ccattttcta tattaaaacg
      121 acgataatcc actcttaaat tactaggaat tctatgtgtt accactataa cacaagttcc
      181 taaaagctct ctagcagatt ttaaaagagt ccatataata tcagaagaat actcgtccaa
      241 atttcccgtt ggctcatcgc aaagcaaaag ctttggatta tgagctaaag ccctagccat
      301 agcgacgcgt tgttgctcac caccgctaag ttgattaggc aatttatctg ctttaaaagt
      361 taaatttaca tgctttaaaa gcttagcagc ttgatcatgg catacttttt tgctataacc
      421 tttaatcatt aaaggcaaca taacattttt ttcaacacta tattcttgta caagtttata
      481 atcttgaaaa ataatcccta ttctttgacg caattttaaa agttctaaat ttccaatttt
      541 attcatcaaa gatccacata cttcaagctt accagaaata ggttctaaat ctccataaaa
      601 agactttaaa agcgtactct taccactccc acttttaccc gtaataaaaa caaaatcatc
      661 atccttaaaa gcaaaactcg cttctttaat aactaattca tcataaccta aagtaagttt
      721 atttgcttgg attaaattag gcatcctttt tccttaattt ccctttttaa atttttaaat
      781 tatgctttat ttttgcttaa ttttcaagaa aaattatatt ttaaactgaa cttttaaaat
      841 ttcttttaat tcatttatcg ctttaatatt ttcttgaatt ttaaatggtt ctttaaaaac
      901 aaaatcaatc gttttatcaa gatgtaaata acaatgttca ggcttattaa aagctccaaa
      961 agcaaccttt aaaagcaaat tctcatcttg tttatagatg ctttcaaaat gcaagaaaaa
     1021 atcatctttt tttatagtaa tatttttaaa attctgctct atttttttca aatcctcttt
     1081 agaaaattca accgatgaga gattaaattc atttaactca tagtttttac actcttggtt
     1141 aaaattccac acccaaagat catatatatt tttttcttgc tttttccatc tatcttcata
     1201 tttgcttgaa atttctaaat tttcattttt tctaagacta aattttggag caggaaaagt
     1261 caaaaattgt tctagagtaa aattaaaata ctcaaaacta tctgttctaa gctcaaaacg
     1321 accattttgg gttaaaaccc tagcacattc tttgcaaaaa tctttcccaa taactcgcct
     1381 atgaggcttt ttatcccaag gaacaggaaa atgtagaaaa atcttttcaa ctgattttga
     1441 ttttaataca ctcaataaca atctcgcatc actttggatt agcaaaatat tatttacatt
     1501 ttgcacttta gcaagtttag ctacttgagt taaagctggg ttgtaaattt ccacccctaa
     1561 aattaaaaca tttggatttt cttttgcttg ataaagcaaa tgtcttcctg atccaaagcc
     1621 tatttctata taaattttac cttgaagctt agacaaaagc tcatcaaaat tatcaacgat
     1681 aaatggtgtt ttttcaatta aagcattgtt tttaagtcca aaagcttcat tgataatatc
     1741 ctcacaaaaa ccttctttaa agatttttaa agccttttgc aaataaccta ttttagaagg
     1801 ttttgtatgt ttatcgcctt taatcacaaa accattttgt gcttttttaa tctgcagaaa
     1861 gaaactctct tcttgaacct ttgtataaat aagactaaca ttatcattct tagcaagcca
     1921 aagaaattca acatcatcct tgctataagg tagatttatt tctttgatct ttttgctttt
     1981 aaaatttggc actactgagc tgccttaact ttgcttgaag gttctgaacg aagcccagcc
     2041 gaatcaatag caataacttc ataactatat tccacccctg gtaaagcttt tacatctttt
     2101 aatcgctttt ctttaatgcc tttaaaaaca gcattttgct ccccgccata gcgtcttact
     2161 tcatactcaa cagctctagt atcattatcg ctccattcta aatttatccc ttcgcttgtg
     2221 ctttgagcca aaataatact aggagccaaa gggttaccta aagttttacc ttctacacca
     2281 tcttttggca taggactttc aagaccatct ttatccacca ttgttacttt ataatacttg
     2341 cttttacctg ctccttctac tatatcctca taagaatttt tatcagtctt tgccaaaaca
     2401 ctaaaaggaa ggaagcttga gcttgtagaa taaactttat aataagaaaa atcttcatat
     2461 gtaggagcat cccaagttaa aatgatttta ttagaaccat ctgtgctagc acttaaatgc
     2521 tcaacttgag gaggcaaagc cttgcttgta gaacttacaa cttgacttgg ttcactcttt
     2581 atcccattaa aactcacagc aatgattcta tagcttgaat tttcattagg ttttaaatca
     2641 ctatcgatgt attcagcgtt taaacgattt tttacttctg caattttttt aaattcttta
     2701 tcatcacctt tagttctttc aataatataa gaatcaactc taaaatcagg atgcggacgc
     2761 caaataagtt taatacgatt aggcaaatta gtcacagctt gaacaaaagg aacagcttca
     2821 agtcttggag ctgtgctcac ttctataacc ttgccatctt ctgaaatttg tccttgctca
     2881 ttaaagcttt tcatcatata acgatactta gtaccaggct ctaatttagt atctacataa
     2941 tgagtttgaa acttatcttt aatagtgcct acaagtttaa aatcaggatt ttcatcacta
     3001 gaacgatata aataaaatcc tttaatattt tcattatata aaggctccca ttcaaaagca
     3061 atattactca tatcgctaag actttttaaa ctttcaacct ttggcaagct ttcatttaca
     3121 gcaggctctt tacttgaagc tagcgaattc atttgcgaaa cactacaagc gctaagcaaa
     3181 agagttaaaa aactcaagta aaaacccaag cgaaatcttt tcatcattct ctcctaaatt
     3241 aatttgttta aacataatat ttttaaaatc ttccatcaaa ggtgctttaa caaaaatttg
     3301 ctctttggtt tttggatgga taaaatacaa aaaataagca tgcaacatta tcctacaatc
     3361 atacttaccc ttataaccat acaaactatc acctaaaata tggcgattta aactagccaa
     3421 atgcgctcta atttgatgag ttcttcctgt aaaaagctta gcagccatca aagttaaatt
     3481 ttcagttttt actatattta taaaagctga ttttgcgttt ttactgaatt tattttcctt
     3541 atctatggct atttttttaa tagcattaga aggcgaacgc attaaaaatt tttctactat
     3601 aattttatct tcttttagtg gcaaatcaat taacgcaagg taaattcttc ccatgctttt
     3661 atctgcaagc tgttcgctta atttttgatg ggtgaaatta tttttcgcta tcagtatagc
     3721 tccgcttgta tctttatcta atctatggac aagaccagct cttatctctc ctcctaaatt
     3781 tgataaagta tatttttttt ctattaacca atccaccaaa gtggcatttt taacgctact
     3841 tgctccatga acgactaaat ttgaaggttt atttaaaaca agcaagtctt catcttcgta
     3901 taacacatca atatcaaaat ccacttcaaa ctgaggtttt atctcattgc aaagctttaa
     3961 acttgcaata gaaataatat caccattttt aagcttaaat gaatttttat cttgaatttt
     4021 atcattaacc tgtacacaat ctttttctat aagtaaagca acttgattgc gactttggtt
     4081 taatttttta gccaaaaata catcaagcct tgaattttca tctactaaaa aagtttgcat
     4141 tttttcctta gaagttttga taaatttaaa attttagttt ataattatag ctttatatta
     4201 ccaactgaag gcaaattttg tttagattag atagaagaat tttaactcat tttgactata
     4261 tgcaacccat tttattttta cccataattc ttatttcatt tttcttaatc tttgaagcta
     4321 atcctttttt agcagaaaaa cagtttgttt atgcctgtgt gggattgttt gcttttatgg
     4381 tttttttctt ctttcccata aggaaattta tttggattat tcctgttgct tattggatta
     4441 atattttttt attgctaagc gtagatattt ttggggttga aaaattaggt gctaaaagat
     4501 ggcttgaaat tccttttact cactttacta tacaaccttc tgaaattttt aaacctagtt
     4561 ttattttaat gcttgcctat cttatttatc aaaatcctcc tccaaaaaat ggatacaagc
     4621 ttaaacaatt catcaaactt agcttttaca tcatcttgcc ttttttgcta attgcaaaag
     4681 aacctgattt aggaagtgct atggttttac tacttgttgg ttttggagtg ctttttatca
     4741 tgggaattca ttataaaatt tggttaagta ttgttatagc tataagtgtt agctctccta
     4801 ttatttatac acatctttta aaaccctacc aaaagcaaag aattcatgat tttatttcag
     4861 aaaaaccaag ttatcaagta gcccaatcaa tgatagctat tggaaatggt ggtttaaccg
     4921 gaaaatctca agatgaagct acgcaaactc attttaaatt tttacctatt tcaactagtg
     4981 attttatttt cgcttacatg atagaaagat ttggatttat tgggggattg acattaatta
     5041 tattttatat tttacttatt tttcatctac ttagtttaaa ttataaactt aaagatgatt
     5101 attttgctag agttgctatt aattgtgttg cattatttat ttttatttat gcggcagtaa
     5161 atatttcaat gactataggt tttgcaccag tagttgggat ccctttgcct ttttttagtt
     5221 atggtggaag ttcttttact atttttatga ttttttttgg aattttacag catttaatca
     5281 cttttagata tttttggacg gatataaagg ctaaataaaa tatttttaag cattaataag
     5341 atataatttt atcttttaat tcaacttagg cggatttata gctcagttgg ttagagcaac
     5401 cggctcataa ccggttggtc gcaggttcga gtcctgctaa atccaccatt ctacatataa
     5461 gctatagact ctttctttaa aaaataattt ttagttcttt aaatatttca atcttatata
     5521 aaaaagtatg tgatgtgatt ttctgaaaga taaagtggtg gttagaggca gaatcgaact
     5581 gccgacacgc agattttcag tctgctgctc taccgactga gctatccaac cacaatgatt
     5641 tgataaatta aaaatgtaat tgtatctttt tttctttaat ttaagtttaa atacaaaaat
     5701 aaaattttat ttcccttaaa gttttaataa gatagaatac ccgctttaga tcattatcaa
     5761 atggaaattt tttgaaacaa tttggactag atagacgaac ttttaaaatt ttactagctg
     5821 gttatattat tattgcattg tttggggctt tattactaca ttcaagctgg gcacatacaa
     5881 ctcctattga ttttttggat gcctttttta caagcacatc tgctgttagt atgacaggat
     5941 tagtagttaa gaacactgcg gttgatttta ccttagcagg gcaaattatt atcttagctt
     6001 tggtgcaaat tggaggcttg ggatatatgg gtataggttt attcgtttat atactcatac
     6061 gcaaaaaagt tggttttagt gcaagaaatt tactaaaaga gtctttattt tatccatcaa
     6121 tggatggttt atttaaattt tttaaaaagg ttttgctgtt catttttact atagaattga
     6181 taggtgctat acttcttacc atgcgttttg cccttgaaat gaattttaaa aaagctttat
     6241 ggtttggaat ttttcattct attagcgctt ttaataattc tggatttact atatttgaac
     6301 atgggcttat agcttataaa catgatatag caattaatct tattatcact tctttgatta
     6361 ttattggagg gcttggatat tttgttttgg ttgaattata cttttttcaa agaaaaaaat
     6421 tgcaaaattt aagcctacat acaaaaatgg ttgttgttgc aagtattttt cttattttct
     6481 cttcaacgct tattattttt gcttttgaat actcaaatcc tcaaactata ggacattttt
     6541 catttttcga taaaatttta agctcatatt ttatcgctat taattaccgc acagcaggat
     6601 ttaacacctt agatatggga catttgcatg atgcaagctt attttttgga tcattgttta
     6661 tggttattgg tggtgcacca ggtggaacag ctgggggtat gaaagtaaca actgtaatgg
     6721 ttttattgct ctatgcttat tggagtatcc gcgatggaag agttagaatt tttggacatg
     6781 aaattccaag agaaactata tctaaagctt ttattatagc tgtaggttca gctgtttata
     6841 tagtaatagc tgttattttg ctttccttgc tagagtcaaa atttgatttt atagccttgc
     6901 tttttgaaac ttcttcagct tttgcaactg taggaatttc agtaggaaat ggtggaactt
     6961 tatctttatg cgctttgttt agtgatccta gcaaggtgat tatcatcatt atgatgctaa
     7021 gtggtaggat aggtgttttt gcttttttac tctcggtatt caaacaagac aaagctattc
     7081 atttaaaatt ccctgaagga aaggttaatt tataaaggta aaatcgtgaa aaatcttaat
     7141 tatggaatca taggacttgg aaaatttggc tcagttgtag cagatgaact cattgctgga
     7201 ggtcatactg ttatcgttgc ggataaagat gaggaagctt taaaaagtat acaaaatcct
     7261 ccaagctatg cttatatttt agattctaca aatatttcag ccctaaaaga agcaggcttt
     7321 catgatgttg aagttgttat tgttagcata ggagaaaatg ttgaaaaatc aatccttact
     7381 cttatggcgc ttaaagatat aggtgttaaa aatatcattg ctaaagcaac ctctaatatc
     7441 catggtcaaa ttctttctaa gttaggtgca acaaaggtta tttatcctga aaaagaaagt
     7501 gctaaaagac tagtaaaaga atttttaact aaagatgctg attatgaagt ttttgatctt
     7561 tcagcaaata ctatacgagc tattaagatc aatatagatg aaaaattagc aggaaattct
     7621 ttaaaacatg tagcacaaaa tatgaaagtg atttcttata aaaaattaaa tagcgactgg
     7681 gaaatactac ctgatttaga aaccacgaca gtttatagtg gagatgttgt aatactcctt
     7741 ggaacagtta aagagcttag agaatttgaa cattaagcaa gatttaaagc cttacaagcc
     7801 tttacaaaac gctttaaggc tgttttttct ttggtagaaa ttttatgata tataacttca
     7861 tctaaataat atctaacatc ttttatatct aaatcccttg ttttggcata attttgcagt
     7921 atataataag gaattttaat ctttgtttct ggaaattttt tcaaaatttg tttatataaa
     7981 gctttttttt gcacacaaga aaatctagca aaaacaaaag gcaatcctgt tttttcgtgc
     8041 cattttgcac ataaatcgat atatctagaa ggatctttta gataaagctt taaagcctta
     8101 tcacctataa ttacttttcc atcttgtttt aatactttag ctaaagcatt tgaagttgct
     8161 gaacttggat ctttggcatt tgatgtattt ttttctacta aaacacttaa aactctttta
     8221 ttagcacaaa tacccaaatc taaattttta tatttttttc tagcactttc tatgcttgaa
     8281 atgatagctg catcaattct tctataaaat aaatctttat ttagcttact tggaactcct
     8341 tttttatact ccatacttgc tttataacca ttaggtaggg gatatttctt aagatatata
     8401 tgtaaaggta aaagattaat ataatcaatt tttccaaaaa tcatctctct taaagagtgt
     8461 taaacactct atctcctgca tctccaagcc ctgggataat ataacctttt tcatttaaac
     8521 cttcatcaat acaagccaca aaaacttcta catcatcatg catttggcta aattttttca
     8581 aaccttgtgg agcagcaagt atggatataa attttatttt tttaactcct tggcttttta
     8641 aaaaattaca agcctctata gcagtcccac ctgtagcaaa cataggatct ataacaatag
     8701 cagtgcgttt ttttgcatct ttgggaagtt tttgaaaata aaaatccgcc tttaaagttt
     8761 cttcatttct cacaaatccc aaaaatccaa cacttgcatc aggaatcatc ttaaaaacgc
     8821 tttcaagcat tcctaatgca gctcttaaaa taggacaaat cataatcttt tcatcaagtt
     8881 tttttactgt agttttttgt ataggtgttg aaatttcaat ttcttttaaa gaaaaatctt
     8941 tgctcgcttc aaaaagcaaa aaagatgaaa tttcatcgat taacatacga aattgaaagg
     9001 gctttgtctc tttagccctt aaaattccta atttatgttc gatcaatgga tgattgatac
     9061 aatgaatatt tttcatttta agctttcaaa ataagctttc tcatcaaaat ttttcacctt
     9121 agccacacca tcttttaccg cagctgctgc tacagctgta cttactgcag cttttactct
     9181 ttcatcaaaa ggttttggta taacataatc tcttccaaat tctaaagtgc ttaaattata
     9241 agctttttta actgcatcac ttacaggaag ttttgcaaga tctgctaatg ctttagcagc
     9301 agctactttc atattttcag tgattttact tgcacgcaca tctaaagccc cacggaaaat
     9361 aaaaggaaaa cctaaaacat tattgatttg attagcataa tcacttcttc ctgttcctac
     9421 aatcgcatct tttctaagtc taactacatc ttcaggcatc acttcaggaa taggatttgc
     9481 caaagcaaaa atcacaggat cttttgccat gcttaaaacc atttcatcat caagaatttt
     9541 tggcgcacta agccctagga aaacatcagc cccttttaaa acttctttta aagtcttttc
     9601 cttagaatca acagcaaatt caagtttttg aggagttaaa tcatttctat ctttagaaat
     9661 cactccttta ctatctacta aaataatatt ttcaacccct aaatttctat acatcttagc
     9721 acttgctata cctgcggcac ctgcgccact tacaaccacc ttaatgtctt taaatttttt
     9781 accgcttatc tccatagcat tcataagccc tgcagttgaa ataatagccg ttccatgctg
     9841 atcatcatgc attacaggaa ttcctaaatc ttgcaaagcc gcttcgattt caaaacattt
     9901 tggcgcagct atatcttcta aatttatccc gcccacagtc ggagccaaag ccttgcaaaa
     9961 atttacaatc tcttccgcac tatgaacatt aatttctata tcataagcat tgacatttgc
    10021 aaatttttta aacaaacaag ccttaccttc cataacaggt tttgaagcct gtgctcctat
    10081 gtttccaagt cctaaaacag cagaaccatc gctaactata gctactaaat tagccttatt
    10141 tgtataagta taagcaagct cattatcttt agcgatttca aggcaaggtt ctgcaactcc
    10201 tgggctatac gccaaagata gatcataact tgtagccatt ggcttacttg gtacaatatc
    10261 aattttccca cctaaatggt attttaaagc ttcttctttt aaattcattt tattttcctc
    10321 taacttttaa aaaattttct attctttttt tacactcatc aacccctaaa aattctaata
    10381 cttcaaaaat actaggactt accgcactcc ctgttaaagc tatgcgtata ggctgagcca
    10441 aatcttttaa ctttgcttct tttttttcta aaaaatcatt tgtaaaatct tcaaaatctt
    10501 tacctgtttt ttgatcttta agtgtattag caaatgcctg gagcaattct aaattatttt
    10561 cgttaacaaa tttttgcact gcattttcat cataattttg cggtgcatta actatgcttt
    10621 ttgcaccatt gataatatca tgcaaggttt ttgcacgctc tcttaataaa tcaagtaaaa
    10681 atcctgcctt tccataaaca gataaatcaa agccgagatc tttaagctga cggttaatct
    10741 cttcaaaagg taaagtttta atataatgag cattcaacca ttcaagcttt ttagcattat
    10801 aacaagatgc gcttttattg atatgataag gatcaaaaag ttttttcaaa tcttctagtg
    10861 aaaaaacctc atcatcacca tgactccaac ctaaacgcac aagaaaatta agcaaagctt
    10921 gaggtaaaat tcccatttct ttgtattcca taacatcagt tgccccatgt ctttttgaaa
    10981 gctttttacc atcttctcca tgtatcatag ccacatgaaa aaatttagga attttaaaac
    11041 ccaatgcctc ataaagcaca atttgtttag gagtatttga aagatgatca tccccacgaa
    11101 tcacatcact tacccccatt aaagcatcat caataacaac agtaaaatta taagttggag
    11161 ttccatcact tcttgcaatg ataaaatcat ccattatatc ctctgcttta aattttacct
    11221 cgcctttaac cccatcttca aaaacaatct cgccgctttg aggtgcttta atacgcacaa
    11281 caggttctat accctgaggt ggcgtgcctt taaattctct atatcttcca tcatatcttg
    11341 ggcgctcttt ggcggcttct tgcttggcgc gcaattcttc taattcttct ttactcatat
    11401 aacaataata cgctttacct tcatctaaaa gctttttgac atattcttta taaagatcaa
    11461 aacgctctga ttggtaagtt acttctccat catgttctaa accgcaccat ttaaaagctt
    11521 cgataattgc tttagtagct tctttggaat ttctttttaa atccgtatct tcaatacgaa
    11581 gtaaaaaatt tccaccattt tttctagcgt ataaataatt ataaagagct gttctaagtc
    11641 cacctatgtg caaataccct gttgggcttg gagcaaaacg cgttgtaagt ttttcgtgca
    11701 ttttttgcct tttcttaaat ttttattgat ataatgcgat atttatactt aaataaaggt
    11761 ttgaaatgaa aaaaatttta ttaagttttg cattttttgc aagtttagct agtgcaaata
    11821 ccattaatgc tatagctgta gttgtggata aagagcctat cacaacttat gatatagatc
    11881 aaactatgaa agtgcttaaa attgatagaa ataaagcttt aggtgtactc atcaatgaaa
    11941 aaatggaaat ttcacaaatg aaacaactgg gtattgtagt caatgatcta gagcttgatg
    12001 atgctataaa taaaatgctt gctcaaaaca aaaccacttt aaatgctttc aaaacaaatt
    12061 taaaatccaa aaatcaaagc tatgaacaat ttcgtgtaaa ttttaaaaaa gatttagaaa
    12121 aaagaaaact ttatgaaaaa atcgcaagta tggcaaaaac tgattttagt gatgatggag
    12181 caaaaaaatt tttcgaacaa aataaagata aattcacttt ttatacacaa attaatacaa
    12241 atatttattt atcaaacaat cctcaaactt tagaaaatat caaaaataca aaaaaaacaa
    12301 tccttaaacc acagaataca tctttaaaca caagcaatgc cgatccaaga cttttagggc
    12361 ttttatcaca aattcctgtt ggaggctttt cccctgtttt aaatggaaaa aatggctatg
    12421 aactctatga agttaaaagc aaagatgggg cacaaactcc tgaatatgaa caagttaaaa
    12481 atgaagtttt aaacgcttat gtaagcgaac aaagacaaaa tttcatacag gattattttg
    12541 ataaactccg ctctaaaatc aatatagaat atttaagata aaaattacaa ttaaaatttc
    12601 cctttaatta gggaaatttt aatgtcttgc aagataattt gtatcgtagt tattattaat
    12661 aaaatcagga ttttccatca tagaaagatg aaaatctttg gttgttttta tcccacttat
    12721 aagcaactca tctaaagcta ctttcatttt tgcaatagct ttattacgat cttctgccca
    12781 aactacaagt ttgcctatca tagaatcata ataaggaggc acgctatagt cttgataaca
    12841 atgactttcc attctgacat tgcgtcctgc gggtggaatg tatttagtaa tcttacctgg
    12901 acttggcaag aaagttttgg aatcttcggc cgtgattcta cattctatag aatgcccatt
    12961 taatttaata ctttcttgag atggtaaagc ataaccttct gctactttaa tcatttgttc
    13021 tatgatatca atcccactta ccatttcact tacacagtgt tcaacttgca aacgcgtatt
    13081 catttctata aaataaaaat ccaaattttt atctaccaaa aactcaaaag ttcccgcacc
    13141 ttcatatcct atagctttag ctgccttaat agcagtttca tgaagtctag tgcgtgtttt
    13201 ttcatcaagc aaaatcgcag gggattcttc tataagtttt tgatggcgtc tttgcataga
    13261 acaatctctt tcgcccacat gaatcacatt gccaaaacta tctcctataa cctgcacttc
    13321 tatatggcgt ggattttgta tgtatttttc catatacata gttccatcgc caaatgctgt
    13381 catagcctcg ctttcagccg accaatacgc tttttcaaga tctttttcat tttcaaccac
    13441 acgcatacca cgaccaccgc cacctgcagc tgcttttaaa atcacaggat aacctatttc
    13501 tttggcaagt tttttagctg cttcagctcc tgccaaagcc ccatcgcttc ctgggatcac
    13561 aggtacgcct gctctttgca tgacttgttt tgcttttgat ttatcactca ttaaattcat
    13621 agcttccaca gaaggaccta taaatttgat gttatgttta gcacaaattt caacaaaatt
    13681 ttgattttca cttaaaaatc cgtatcctgg aaaaatcgca tctgcttcag caatttcagc
    13741 tgctgtaata atagctggga tatttaaata gctttcagaa cttcttgctt tgcctataca
    13801 aatgcttgca tcagcgtatt ttaaatacaa agcatcttta tctgcttcag agtacacaca
    13861 aattgctttt ttacccattt ctttaatcgt tcttaaagca cgcagtgcta tttctccacg
    13921 attagcaatt aatatgcttt taatttccat tttataattt ctccaccgca aataaaggca
    13981 ttccaaattc tacaggctga ccatcagcaa ctaaaatttc agcgatccta caatcaaatt
    14041 ccgcttcaat ttcattcatg attttcatcg cttcgataat agctatagta tcgccttttt
    14101 taaccgtact acctactttt acaaaaggtg ctgcacctgg acttggagct tgatagaaag
    14161 ttcctaccat agggctgttt atacttggtt tgtttgattt tacactttga ctaggttgag
    14221 cttcgtttac aacgcttaca ttgataggtt gtggagctgg aactggagga caaacagggg
    14281 ctggaacatc gcagcacata tctctttcaa gttctatttc aaaaccatct tgttctttga
    14341 tcttaatttt actaatattt gcttcagcaa aaaggtttac taactcttta atttcttctt
    14401 ttgtcataaa attctcctac aaaatttaag aacttaacct tgtattatat aaaaaaactt
    14461 gaaatttaac tttaaaaaag aaaaaaatca taaaaaatat agatttttta ggttataatc
    14521 cttacaaaca attacaaata ttaaaaaggt taaaaatggg cttaaaagcg gataattgga
    14581 taagaaaaat ggcattagaa cacaagatga tcgaaccatt ttgcgaagca aatataggaa
    14641 aaggtgtggt aagctatgga ctttcaagct atggttatga tatacgtgta gggcgtgagt
    14701 ttaaaatttt taccaatgtt aattcaactg tagtggatcc aaaaaatttc gtagaagaaa
    14761 atgtagtaga ttttgaaggc gatgtatgta tagttcctgc aaattctttt gccctagcca
    14821 gaactataga gtattttaaa atgcctgata atgtcttagc tatttgtctt ggcaaaagca
    14881 cttatgcaag atgtggcatc atcgtcaatg ttaccccttt tgaaccaggt tttgaaggac
    14941 atatcactat agaaatttca aatactacgc ctttacctgc aaaaatttat gccaatgaag
    15001 gtatagcgca agtgttgttt ttgcaaggcg atgaaaaatg tgacaccact tataaagata
    15061 aaaaaggcaa gtatcaagcc caaactggca ttaccttacc aagaatttta aaataggaac
    15121 acttattgct ttaatttaaa aaaacttaag caaaggaagg caaaatgttt aacaaaaaaa
    15181 atatcttaat cacgggcgga acaggctctt ttggaaaaac ttatactaag gttttgctag
    15241 aaaactataa acctaataag attatcattt attctcgtga tgagctcaaa caatttgaaa
    15301 tggcaagcgt ttttaatgct ccttgtatgc gttatttcat aggagatgta agagataaag
    15361 agcgtttaag tgctgctatg cgtgatgtgg attttgttat acatgctgct gcgatgaagc
    15421 atgtgcctat tgctgaatat aaccctatgg aatgtataaa aacaaacatc cacggcgcgc
    15481 aaaatgtcat agatgcttgt tttgaaaatg gggttaaaaa atgtatcgct cttagtacgg
    15541 ataaggcttg caatcctgta aatttatacg gtgcaaccaa acttgcaagc gataagcttt
    15601 ttgtcgctgc aaacaacata gcaggtaaca agcaaacacg ctttggtgtt acaagatatg
    15661 gcaatgttgt aggttcaaga ggttcagtgg tgcctttctt taaaaaactc atcagcgaag
    15721 gagctaaaga acttcctatc accgatacga gaatgactcg tttttggatc agccttgaag
    15781 atggagtaaa atttgtactg agtaattttg aaagaatgca tggaggagaa atctttatcc
    15841 ctaaaattcc ttcgatgaaa atcaccgatc tagcccatgc tctagctcct aatttaagcc
    15901 ataaaatcat aggcataaga gcaggagaaa aactacatga aatcatgatt tcaagcgatg
    15961 atagtcattt aacctatgaa tttgaaaact actatgccat aagccctagc attaaacttg
    16021 tagataaaga taatgacttt agtatcaatg ccctaggcga aaaaggacaa aaggtaaaag
    16081 atggtttttc ttatagttcg gataataatc ctttatggac aagcgaaaaa gaacttttag
    16141 aaatcatcaa tcacaccgaa ggtttttaaa atgcttactt attctcatca aaacatcgat
    16201 caaagcgata tagatgcgct tacaaaagct ttaaaagatg aaattttaac agggggtaaa
    16261 aaggtagatg aatttgaaga agccctttgt gaatatgtgg gcgtaaaaca cgcttgtgta
    16321 ttaaactcag ccacttcagc ccttcatctt gcctatacag cactaggcat caaagaaaaa
    16381 atcgttttaa ccactccttt aaccttcgct gctacggcta atgcggcctt aatagctgga
    16441 gctaaggtag agtttatcga cattaaaaac gatggcaata ttgatgaaaa aaaactagaa
    16501 gcaagacttt taaaagatag taaaaatata ggagctatta gcgtggtgga ttttggggga
    16561 aatagcgttg aaatagatga aatttcaagc cttgctaaaa aatacaatat ccctttaatc
    16621 gatgatgcaa gccatgcttt aggtgctttg tataaaagtg aaaaagtagg aaaaaaagcc
    16681 gatctttcta tattttcttt tcaccctgtt aagcctatca ctacttttga aggtggggct
    16741 gtggtgagtg ataatgaaga gcttatcgat aaaatcaagc ttttaagaag ccatggtatt
    16801 gttaaaaaaa ggctttggga tagcgatatg gtagaacttg gctataatta ccgcttaagt
    16861 gatgttgctt gtgctttagg gataaaccag cttaaaaaac tcgatcataa tcttgaaaaa
    16921 agagaagaaa tcgcaagttt ttacgataaa gaatttgaaa aaaatcctta tttttccacg
    16981 ataaaaatca aaaattataa aaaaagctca agacatttat accctatctt gctttttcct
    17041 gaattttatt gtcaaaaaga agagcttttt gaaagcttgc ttcatgcagg agttggtgta
    17101 caggtgcatt acaaacctac ttatgagttt agtttttata aaaaactctt aggggaaatc
    17161 aaactccaaa atgcggataa tttttacaaa gccgagctta gcataccttg tcatcaagaa
    17221 atgaatctaa aagatgcaaa atttgtcaaa gatactttat ttagcattct tgaaaaagtt
    17281 aaaaagggat attgtggata agctagactt tagaagccaa gattttagcc aaactggaaa
    17341 ggctatgtat gaactagctt gtgaactttt tcctatccct agaagtatca cagggcaagg
    17401 ttttagagat agcttagaaa ttttaaataa aactctgggc ggggggggga tactcaaatt
    17461 tcactctata aaaagtggta caaaggtttt tgactggata gtccctgatg aatggaacgc
    17521 caaagaagcc tatatcatca ctccagaagg agaaaaaatt tgtgatttta aaaagcataa
    17581 tctacacctt ctaaactata gcgaagctat cgataaagaa atcgaactag aagaacttca
    17641 agatcatctt tactccatag aagaaatgcc cgatgctatt ccttatgtaa cgagttatta
    17701 caaaaggcgt tggggatttt gtctcacgca taatgaaaga aaaaaactta aaaaaggcaa
    17761 atacaaagtt tatatcgatg caaaacatga tgaaaatggg gttttggatt atgctgattt
    17821 tatcctacct agtacgcaaa attcaaaaga tgaaatttta atttcaacct atctttgtca
    17881 tccttccatg gcaaataacg agcttagtgg ccctgtggtg gctattttcc tagcaaaatg
    17941 gcttttgggt ttaaaagaaa gaaaatataa ttaccgcttt gtcatcatcc ctgaaaccat
    18001 agggtctata gtctatctta gcaaacattt agagcattta aaaaaatatg ttaaagcagg
    18061 ctttgtgctt tcttgcttag gcgatgatca tgcttactca ctcatacata cacctaaaga
    18121 aaacactcta agcgataaag ttgccttgca tacgcttaaa aataaagaaa atttcaaagc
    18181 ttttagtttt ttggatcgcg gaagcgatga aagacaatac aatgctccgc ttgtaaatct
    18241 tggcattgta ggagtatgtc gcacaagata cctagaatac gaacaatacc acaccagcaa
    18301 agataatctc aattttatct ctgaaaaagg tttaatgggt ggacttcaaa gcatgcaaga
    18361 aatgatttta aatctagaaa tcaacgccgt atataaaaac accatagtat gcgagcccaa
    18421 tcttggcaaa agaggactat atcataccct tagcactgcc aatgacattc ctttagcttg
    18481 taattttcta gcttactgtg atggagagaa tgatatcatc gatatagcca atatcttaaa
    18541 tatgcaagct tatgaattta aagaactttt gaaaaaaata aaattttatg gactagtaaa
    18601 atgaaatatt ttttagaaca caatgacaaa aaatactccg ataaggattt aatagatgct
    18661 ttttatcaac taggtataaa aagaggcgat attttatgtg tacatacaga actttttaaa
    18721 tttggcatac ctttgctttc tagaaatgaa tttttacaga ctatactcaa ttgttttttt
    18781 gaagttatag gtcaggaagg cactttgatc atgccaacct ttacttatag tttttgtaaa
    18841 aatgaagttt atgacaaaat aaattccaaa acaaaaatgg gagcattaaa tgaatatttt
    18901 cgcaaacaaa caggagtaaa acgcacaaac gatcctatat tttcttttgc tataaaagga
    18961 gcaaaagaag aattattttt aaaagataca acaagttgtt ttggggaaaa ttgtgtttat
    19021 gaagttttag ccaaagagaa tggaaaatat ataatttttg gtttaaatga agggcacgct
    19081 ctagttcatt acgcagaaga aaaaaataca actttttgta gatattttaa aaattttaaa
    19141 ggtattttaa taaacgaaaa aaggaaagaa aaaacaataa ctattgacta ctacgttaga
    19201 gatttgca
//
LOCUS       DAEBKH010000017        18117 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.017, whole genome shotgun sequence.
ACCESSION   DAEBKH010000017 DAEBKH010000000
VERSION     DAEBKH010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18117
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.017"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..528)
                     /locus_tag="KIL20_000406"
     CDS             complement(<1..528)
                     /locus_tag="KIL20_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HBD2720462.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQG"
     gene            complement(525..1199)
                     /locus_tag="KIL20_000407"
     CDS             complement(525..1199)
                     /locus_tag="KIL20_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HBD2720463.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIISSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(1275..2693)
                     /gene="htrA"
                     /locus_tag="KIL20_000408"
     CDS             complement(1275..2693)
                     /gene="htrA"
                     /locus_tag="KIL20_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HBD2720464.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTTTANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFPQRKGKNDKEVVSS
                     LGSGVIISKDGYIVTNNHVVDDADTITVNLPGSDTEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTISALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNDKIIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGAQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            2893..3786
                     /locus_tag="KIL20_000409"
     CDS             2893..3786
                     /locus_tag="KIL20_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HBD2720465.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNAGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEENLDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            3802..4176
                     /gene="hspR"
                     /locus_tag="KIL20_000410"
     CDS             3802..4176
                     /gene="hspR"
                     /locus_tag="KIL20_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HBD2720466.1"
                     /translation="MEHHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDHIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQDK
                     EAASKAVVKHKNSFDLIFYEKK"
     gene            4183..5808
                     /locus_tag="KIL20_000411"
     CDS             4183..5808
                     /locus_tag="KIL20_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HBD2720467.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTTLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            5818..6150
                     /locus_tag="KIL20_000412"
     CDS             5818..6150
                     /locus_tag="KIL20_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720468.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKSELLNLANALDKQKKQGEKKEKH
                     KNYLKDYE"
     gene            6147..6767
                     /locus_tag="KIL20_000413"
     CDS             6147..6767
                     /locus_tag="KIL20_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HBD2720469.1"
                     /translation="MINVFFDMDGTLIDSANAISCTVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSSFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHQIIPYFDKILGVNLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKDLKENEFSNASELKGFLEKYL"
     gene            6823..8817
                     /locus_tag="KIL20_000414"
     CDS             6823..8817
                     /locus_tag="KIL20_000414"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HBD2720470.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWKNVLEEYRLVNDFKF
                     YYTPRRLVFFHENFAEKQEDSFAEFIGAPKNVTYKDGVLTPAGQSFLQKAGISENELT
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMIEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSAKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPGEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYEICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSSHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSQNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            8814..9635
                     /locus_tag="KIL20_000415"
     CDS             8814..9635
                     /locus_tag="KIL20_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HBD2720471.1"
                     /translation="MKALWILLSLTLWLFGAQNLELIKGQALFLELDKKNFLSLKNND
                     KNIPTFAHPKNQEKILAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     VENKKIFPPKTIQERIAKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAATGTPIYAANSGVVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKVGQKIKKGELIGLSGASGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            9632..10582
                     /locus_tag="KIL20_000416"
     CDS             9632..10582
                     /locus_tag="KIL20_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HBD2720472.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDKKILQLPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFVIEPHEKLR
                     TLQKKTLEGVEFTHKDSLKECHFKNAFFFCNELFDSFACELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLKKGELSLELENFFKDLNQTCERFIFAGFDYGTLNPQSFSLRIY
                     QKHEVFSPFEVSLKDFFGKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLALMDFGFE
                     DLLKYTKNKNIKTYESFLSQAKILFFNFDEKFHFFEFQKN"
     gene            complement(10579..11553)
                     /locus_tag="KIL20_000417"
     CDS             complement(10579..11553)
                     /locus_tag="KIL20_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HBD2720473.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNTLSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKKEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNYHSY
                     YKSCISYKKLIKKYPKFIINIKDKKLKIHFLIANPYLKHLAFRAFDEVAMIKKELRSL
                     GVKTVVLNSGVPTTLSALKQNISYEKYEASRVNGKKLYHKDFLNYAITLFHMEEKKAI
                     KEVGAMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
     gene            11610..12383
                     /locus_tag="KIL20_000418"
     CDS             11610..12383
                     /locus_tag="KIL20_000418"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HBD2720474.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIVARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPVNLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLKQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYTNLHNAL
                     FSNISHTAFALKELDQDKKTLQAQFEKELQNLKLCAKKGVELGLKVAAGHGLNYKNVK
                     LIVKIKEICELNIGQSIVARSVFTGLKNAILEMKELIKR"
     gene            12380..13474
                     /gene="pdxA"
                     /locus_tag="KIL20_000419"
     CDS             12380..13474
                     /gene="pdxA"
                     /locus_tag="KIL20_000419"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HBD2720475.1"
                     /translation="MKKLAISIGDINSIGLEILVRSHEELSKICTPFYFIHENLLDKA
                     SKLLNLKLFNAKIVAFKDGKDYEFNFIKKENSLEIYSFCLPLGFKVDENFEIKAGEID
                     AKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMILGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKIGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLYSKKDEKFFKKALKDENLQKELLLNFKGKGVYLP
                     YPLVADTAFTKAGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLNPKA"
     gene            complement(13457..14066)
                     /locus_tag="KIL20_000420"
                     /pseudo
     CDS             complement(13457..14066)
                     /locus_tag="KIL20_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            14179..15378
                     /locus_tag="KIL20_000421"
     CDS             14179..15378
                     /locus_tag="KIL20_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD2720476.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHIQLLSNLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKLLVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLAGLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFKKI"
     gene            15434..15754
                     /gene="ciaC"
                     /locus_tag="KIL20_000422"
     CDS             15434..15754
                     /gene="ciaC"
                     /locus_tag="KIL20_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HBD2720477.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     EEKTSSSKFTNEDIDLSAAREDFRSYAWQKMREDQYKKNEETLLNKLFATIDAGNATN
                     NTKA"
     gene            15934..16956
                     /locus_tag="KIL20_000423"
     CDS             15934..16956
                     /locus_tag="KIL20_000423"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HBD2720478.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFDNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKGKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVEKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            16953..17855
                     /locus_tag="KIL20_000424"
     CDS             16953..17855
                     /locus_tag="KIL20_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HBD2720479.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKVVLEKNVEFDFLTLTANGEPSLYPHLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKA"
     gene            complement(17852..>18117)
                     /locus_tag="KIL20_000425"
     CDS             complement(17852..>18117)
                     /locus_tag="KIL20_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720480.1"
                     /translation="CINSFSQLKQELSKETYRLILLDYELIKFDLEQMRNLLSAYKKQ
                     HPQSHIIFFSKEKVEDFDCVSEVLSDVSRNDLITLLRKYLPKA"
BASE COUNT         6552 a         2751 c         2691 g         6123 t
ORIGIN      
        1 tccttgggca aatttatcaa tttgtttttt aagtctttta agtggtttta attttttaaa
       61 tatataaata taaagcaata caagaataca aatcacagct acagctatag ctttgataat
      121 aaaataccta taggtttgat aatcttgatc cttataaaga taaacctttc catcataaat
      181 aatatttaaa tacacctgtc tattataaga aataatctcg attaagccat tattaacctc
      241 aaccctagct aaaacatcac ctctaaaaag aattttacgg atctgctttg cttctgttat
      301 ctcatccatt ttattataat tttttgtctg ctcttcaaat tctttttcgc tgataactcc
      361 tgcaaaattt aagagccttg cattagctat caaagaatat tttgtattta attctctagt
      421 ataattttgc tgatcgtatt ctataagcca caaaaagcca agtataacac taaccccagc
      481 aaaaataaaa ataaaagtta tagtataaaa aatcgaagat ttattcattg agtaagctta
      541 taacctattc cacgtataga gtgaatatat tttggagttt ttggatcatc tcccatcttt
      601 tgacgaattc tactgataat aacgtctata cttttattac tagaatcctc actaatagaa
      661 gaacaattat aaacaagctc ttcacgactt accactccac cctctttttt aatcaaatag
      721 cttaaaatat caaattcagc attagttaaa gtaagctctt gtcctttcat ggtaataata
      781 tgcttatatt gatcataaac aagatctttt acactttttg ctatggcgct ttttgtattt
      841 gaaatacgtc ttaaatgact tttaatacgt gcttgtaatt cttttggatt ataaggtttt
      901 ggtaggtaat catctgctcc aagctctaaa gcattaacct tatctgtaat atcatgtctt
      961 gcacttgaaa taataatagg cgtatcatac tttttacgaa tctcttcaca cacttcaagc
     1021 ccatcaagtc ctggcaaaga aaggtctaaa atgataagct gatactcttt taatgcgagc
     1081 ttagaaaggc ctatataagg ctcatgagct atatcaactt tcatatcaaa tttttccaaa
     1141 tattcagctg taatttctgc taattctaaa tcgtcttcta tcataagaat atttgtcata
     1201 gttttccttt attttaaact taattttaat tttaaactaa aatttataac gaaaggaaaa
     1261 tccttccgtt atttttattt aagcacaagc aaagtcgcaa aaccattgcg atatacccaa
     1321 actttggtaa attctttttt attaacttgt tttaaagctt gttctaaatc ttttaaattt
     1381 ttaatttcgc tttgtccaac acctatgata atatcaccct cttggaaacc agaatttttt
     1441 cctttgctct tttctttaac actatcaacc aaaacaccat taacatcttt tggaatttgc
     1501 aaacgatcct taagtcttgg atctaaattt ctcaaactca aaccatcaat cagatcactt
     1561 tgtgcgcctt taggattttc tttttcacct ttaagaataa aacttgcttg cttattttct
     1621 ccatctcttt cgtaacttaa tgaaattttt tgaccaatct ctaaagttcc tatataattt
     1681 ttaagatcaa taggactttt tataatctta tcattaactt tagtaactaa atctccacgc
     1741 ttaagccctg cttcatcagc acttgaacct ttttgaacat cagtaattaa agctccttct
     1801 tgatttttgt aagctttttt agtatcacct tgcaaagctg aaatagtcac acctaaaaat
     1861 cctctatcaa tcttgccttt ttcaataagt tttttagcta tatctttaac catatttgaa
     1921 ggtatagcaa aacctatgcc gttatttcca ccgccacgag aaagaatagc tgaattaata
     1981 cctactaaat atccacgact atccaccaaa gctccacctg aatttcctgg attgatagaa
     2041 gcatctgttt gtataaaatt ttcatattga tttaaaccta tattgtcttt gtttaaagca
     2101 gatattatcc cacttgtaac actaaaaccg actccaaaag gatttccaag tgcaaaaaca
     2161 acatctcctt ccattaaatc atcagaattt gtaaaagtaa tagctgaaag attattagcc
     2221 tctattttta taacagccaa atctgttttt ggatctttac ctataagttt tgctttatat
     2281 tctgtatcgc ttcctggtaa attcactgta atcgtatcag catcatctac aacgtgatta
     2341 tttgttacta tataaccatc ttttgaaata atcacccctg atcccaaaga actcaccact
     2401 tctttatcat tttttccttt tctttgagga aaatcaaaat caaaaaattg tttaaaataa
     2461 ggatcattaa agaaatcatc caaaggactt ggacgattcg ctcttgtaat agtttttgag
     2521 gtggaaatat taaccactga tttttttgca tctttaatag aatcatgata agaaagcact
     2581 gcatttccag cagcaggatt cacacgatta gccgttgtgg tcgattcgtt aaaattaata
     2641 cttgcagcaa ataaagcact tgctaaactt aatgataaaa aaatcttttt catttcattt
     2701 ccttttgttc ttaaagataa attatctcgt aaaatatttt actgtcttca tagtataaaa
     2761 ccgaaaattt acaaaattgt aaataaaacc ttgagtgata aaaatttata aaacttgatt
     2821 gacttaggct aaagtttatg ttataattta atcctttata taatcaagta aaaattttta
     2881 aggaaatata acatgaatag tttatacgaa actcttggag ttagcaaaaa tgctagtgca
     2941 gatgaaataa aaaaagctta ccgtcgccta gctagaaaat atcatcctga tatcaacaaa
     3001 gaaaaaggcg cagaagaaaa atttaaagaa attaatgctg cttatgaaat tttaagtgac
     3061 gaaaaaaaac gagctcagta tgaccaatac ggcgattcta tgtttggtgg acaaagtttt
     3121 catgattttt caagaaatgc tggtggggta aatttagacg atattttaaa agatctcttt
     3181 ggaggaggct ttggtggacg ctcaagaggg ggttttaacg gcttttcttc aaaaggcttt
     3241 agcagtggtt ttggaggatt tggaggtttt gaagaagaaa atttagacag caatctagag
     3301 cttcacattc ctttcgaaaa agctgttaaa ggcggggaac atagttttaa ttttcaaggc
     3361 gaaaccatta aatttaaaat tccacacggt ataaaagaag gcgagaaact aagaattcgc
     3421 tctaaaggaa aacaaagcag aaatggagct agaggcgatt taatcattat tgtaaaaata
     3481 gaagaaagtc ctatttacac aagagaagat gatgatttat atcaaaaggt tgatatttct
     3541 ttaaaaactg cactttttgg tggaaaaata aatataaaaa cactcaaaga aggtaaggaa
     3601 gaagcgacaa ttaacataac gcctaattca aaaaataacc aaaaaattcg tttaaaaggt
     3661 tatggggtgc aaaatagaaa aagtgatatt tatggggata tgtatttgat tttaaatgtt
     3721 gttttgccaa atttagatac tcttgatgaa aaatttatag aactcttaaa agaaaaatta
     3781 ccttaaagaa aggaataaaa tatggaacac cattatgatg aacctgtata tttaatcagt
     3841 gttgtggcta aagttttaag catacatcca caaaccttaa ggcaatacga aagagaagga
     3901 ttgatagagc caagtagaac cgatggcaaa ataagacttt attctcaaag ggatattgat
     3961 catattaaac ttatattgcg tttaacaaga gacatgggaa tcaatcttgc tggagtagat
     4021 gttatcttaa aattgaaaaa ccaacttcac gaatttgaaa atttaattga tgaactacgc
     4081 ttagaattaa gcaaacaaca agataaagaa gcggctagta aagccgttgt caagcataaa
     4141 aatagctttg atttgatttt ttatgagaaa aaataaaaaa taatggataa ttttttagaa
     4201 atttttttaa tcaccgttgc tatagctata gttttaaatg tcatatttaa aaaatttgaa
     4261 attccaacta tcattggata tatagctgct ggagaaatca tttctgaaat ttatcattta
     4321 agtggcaaag gcgaaatcac ccatatagcc gaatttggta tagtgttttt aatgtttacc
     4381 atagggcttg aattttcttt taagcattta atggcaatga aacaagaagt ttttttaaac
     4441 ggctctttgc agatgcttac ttgtggcttt gtttttatgc tacttgctat aggaatttta
     4501 ggacttggag ataaaagcgc taccatagta ggctttgcac tagcactttc ttcaactgca
     4561 gtggtgctta aaattttaaa tgataatggc gatataaatg agcaatatgg cagaaaagca
     4621 ttgggaattt tgctttttca ggatatagcc gttattcctt tgcttttgct tgtagatatt
     4681 ttttcatcca acaatcaaaa catagaaaaa ctccttttta ccactttaat ttcagcactt
     4741 attttaatca ctttattatt tttcataggt aaatatctag tggatagaat ttttagactc
     4801 attatccaca cttcttctca ggaaattttt atcagtacag ttttatttat ggttattgga
     4861 gcaagttttt tagcaaatta ttttggattt tcttattctt tgggtgcttt tatagcaggt
     4921 gctttgatag cagaaacaaa atataaacac aaaatagaag cggacttgat cccatttaga
     4981 gatttgcttt tagggctttt tttcataact gtaggcatgc aaattcaact tgatgtagta
     5041 gcgcaaaatt ggtttttaat catagtttta acccttcttg taatggcttt aaaatttggc
     5101 atagtttttg gctttttatt tctttacacc aaaaaaagag tagcgcttaa aacagctttt
     5161 gccatagcgc aaattggaga attcgcccta gcaatttttt ctcttttaca agcaaaaaat
     5221 atgcttgata tcaaaacttc acaaatttta attgttgttt ctattttaac catgattatc
     5281 acacctttta ttttaaacaa tataagaaaa attaccaatg ttgtagaaga tatagcactt
     5341 aataccaacg ctgtgcaaaa tattgacagc aatatcaagc ttaaaaatca tcttgttgtt
     5401 tttggctacg gacgtttagg tcaagaagtc gtacaaaaaa tcaaaaacac aggcgtacct
     5461 tatcttgttt tagaaagtga tttaaattta gtagaacttg gagttagtcg gggtgaaaat
     5521 gtcgtttttg ccaatgctgc tcaagaagaa accttaaaaa ttgccaatat agaagaatgt
     5581 gccgtagcta ttatcacagt tacaaatgaa gctaaacttg aaattttatg tcaagtgcta
     5641 gctaattatc caaaacctat agatactatc attcatgtaa atggaacttt gaaaaagatg
     5701 cttttttcta gcatagatga aaatatacgc atcattcgct ctgaaaaagt aatcgctaga
     5761 aatttagttc aagaagcact agaatgccgc attcataaaa atacctaagg aagaattttg
     5821 acaaaaaatg aagaaaaagc cttacgcgta aaatacctaa gaaatcttga aaaatttttc
     5881 aatggcgcta tatctgcact taaaaaagaa gattttgata aaactaaatt tgaagaaaga
     5941 atgttaaaaa atgctaaatt ttttgaaaaa aatcccgcgg taaatcttaa ctcaacttac
     6001 gcaaaaaatc ttgaattttt tgtcaatgct tgtttagatt tttccaaaga aaaaagcgaa
     6061 cttttaaatc ttgccaatgc tttagataag caaaaaaaac aaggtgaaaa aaaagaaaaa
     6121 cataaaaatt atttaaagga ttatgaatga ttaatgtatt ttttgatatg gatggaactt
     6181 taatcgatag cgcaaatgcc atttcttgta cagtcaatga aataagacag gatttaaacc
     6241 tagccccact ttcaagagaa atcattatgc aaaccatcaa tactcctaat attgactggg
     6301 caaaagaact ttataatata gaaaatttcc atcattctag ttttaaagaa ggctatgaaa
     6361 aatattttgt caaacactat gaacaaagcg tggtgctttt tgaaggggtg aaagaacttt
     6421 tggaattttt aaaaagcaaa aattgttttt tagctattgc tactaacgcc ccgcaaagct
     6481 cactttcaaa catacttaaa aaacatcaaa tcattcctta ttttgataaa attttaggcg
     6541 taaacttggg catagaaccc aaacctcatc ctatgatgct agagctttta aaaagtgagg
     6601 ctccatataa aacaagcgtt tttatagggg atagtcaaaa agataaagaa tgtgctaaaa
     6661 atgctaattt gccttatttt catgccaaat ggtatcaaaa agatttaaaa gaaaatgaat
     6721 ttagcaacgc tagtgaactt aaaggttttt tggaaaagta tttataagtt ttttaatgaa
     6781 attttagtta aaattagaaa taaattttaa aaagagtaaa ttatgagtga attattaata
     6841 gaaattggca cagaagaatt acctgctatt cctttgctaa aagaattagc taatatagaa
     6901 aaaaaatgga aaaatgtttt agaagaatac cgcttggtaa atgattttaa attttattat
     6961 actccgcgtc gtttagtttt ttttcatgaa aattttgcag aaaaacaaga agatagcttt
     7021 gctgaattta taggagcacc taaaaatgtc acctataaag atggggtttt aactcctgcg
     7081 gggcaaagct tcctacaaaa agcagggatc agtgaaaatg aactcacttt taaagaaatc
     7141 aaaggcaagg aagttttata ccatcaaaaa gctattaaag gtttacaaag tcaagaaatt
     7201 ttaggagaaa tgatagaaaa atttctaaaa agtcttagtt ttggcaaaag tatgcgctgg
     7261 ggtgcaaatt cttttgaatt catccgtgcg atccgttcta tagcttgcat tttaaatgat
     7321 gaacttgtaa attttcaaag ttatggggta aaaagtgcta aaaaaacttt cattcacaga
     7381 agtgtaagtt atgatttgca agattttaac aatgcaaaag aatattttga actactagaa
     7441 aaaaactata ttatccttga tccaatcaaa agaaaagaaa aaatacttga gcaatttaaa
     7501 ctcatagaaa gtcaaaaaaa tatacaaatt ggagaggatg aagaactttt agctgaagta
     7561 gttgctatca cagaataccc taatgcactt ttaggaagct ttgaagaaga atttttagaa
     7621 attcctggcg aagtaatcat cacttcaatg agagaaaatc aacgttattt tgcagttttt
     7681 aacgataaag gcttaagtaa tcattttata gtagtaagca atgcagtatg taaagattat
     7741 tcaaaaatca tacatggaaa tgaaagagtt ttgcgtgcaa gacttagcga tgcaatgttt
     7801 ttttatcaaa atgatttaca aaatggttta aaacctgaaa aacttgccaa aatgacctat
     7861 cttgaaggtt taggcacaat gcaagataaa agtttaagag agattaaaat tgctgaaatt
     7921 ttatgtcaaa tgcttcataa tgataaaatc gaaaatatca gcacagcact aaaatacgcc
     7981 aaagcagact tagccacaca aatggtttat gaatttactg atttgcaagg cattatggga
     8041 agttattatg cgcaaaaaat gggcttagat tatgaaattt gcttagccat caaagaacaa
     8101 tatcttccta attccgaaca agctccactt ccaagcacgg aattttcaag catagtagcc
     8161 cttgcaaaca agcttgatac ccttatagga ctttttagca taggaaaaat tccaagcgga
     8221 acaaaggatc cttatgcctt aagaagagca gccaatggga tcattaaaat cgctctaaat
     8281 ttaaataaag aatttgatat ccaaatttta ttagaaaaac tttcaagtca ttataaaagc
     8341 tttgatatgc aaattttaaa agattttatt tttgaaagac tttatacttt ttatacggtc
     8401 aatgcttctt ttgtaaaagc ggttttaagc tcacaaaata cagatcttat ccatatcaat
     8461 caaagcgtaa atgctcttat aaaacttagc aaaaaagata attttaatga aaattttgca
     8521 acctttaaaa gactagccaa tatcgccact aaaaatcctc ataaagttga tgaaagtctt
     8581 tttgttcaag aagcagaaag taaactttac aaagcttttc aagaaaaaac taaagccaac
     8641 tctttacaag aaaaacttga aaatcttttt gcacttaagc cttttattga tgagtttttt
     8701 aatcaagtga tgattaatgc tgaagatgaa aaacttaaaa ataatcgcca agctttggtt
     8761 tatgaaattt atgcggagtt tttaaaaatc gccgatctta aagagttaag cctatgaaag
     8821 ccttatggat tcttttaagc cttactcttt ggctttttgg agctcaaaat ttagaactca
     8881 tcaaaggtca agctttattt ttggaactag ataagaaaaa ttttttatct ttaaaaaata
     8941 atgataaaaa tattcccaca tttgcgcatc ctaaaaatca agaaaaaatt ctagctattt
     9001 tttccctacc ttacaaaaat cccccgcaaa atacaaaact tatcgcattt tataaagata
     9061 aaaaagaaga aattttcata aaaactttag aaggtaatta taaaagtgaa aaattgcaag
     9121 ttgaaaacaa aaagattttt ccaccaaaaa ccatacaaga acgcatcgct aaagaattaa
     9181 aagaagccaa tgcgatttat agttcttata ctccaaaagc tttatttaac ggtgctttta
     9241 atataccttt aaattctttt atcacaagtg attttggcaa agcaagaact tttaatgaaa
     9301 aagtagcaag ttatcatagt ggaacggact ttagagccgc cacaggaacg cctatttatg
     9361 cagccaattc aggtgtagta aaaattgcaa aagatcgtta tttcgcagga aattcagtag
     9421 tcattgatca tggttttgga atttattcac aatattatca tctttctaaa atcgatgtta
     9481 aagtaggaca aaagataaaa aaaggtgaac ttataggact tagtggggct agtggtaggg
     9541 taagtgggcc gcatttgcat tttggaattt tagctggagg caaacaagtt gatcctttgg
     9601 attttgtatc caaatttaat gctatttttc aatgaaattt agtgactttt tccatgcttg
     9661 gctccatgaa agctattata aaaatgctgt aagtatagga aaaaacggag atttttttac
     9721 tgctgtaagc gtaggaaatc tttttggcac acttttagcc aagcattttt taaatttaat
     9781 agataaaaaa attttacaac tccctttaga acttgtagaa ataggtgcta atgaaggata
     9841 tttaagtcgt gattttttag ccgctttgct tgaattaaga cctgaaattt tttctcaaat
     9901 ttcttttttc gtcatagaac cgcatgaaaa attaagaact ttacaaaaaa agactttaga
     9961 aggagtggaa tttactcaca aagatagtct taaagaatgc cattttaaga acgctttttt
    10021 cttttgcaat gaactttttg atagttttgc ttgcgaactt atagatcatg ataaaatggc
    10081 atttgtagaa aattttaaac ttatttttaa aaatatggat gaaaatttaa tcacaaaatg
    10141 caaagcttta aatcttaaaa aaggtgaact cagtttagag cttgaaaatt tttttaaaga
    10201 tttaaaccaa acttgtgaga gatttatatt tgcgggattt gactatggaa ctttaaatcc
    10261 acaaagtttt agcttaagaa tctatcaaaa gcacgaagtt tttagccctt ttgaagtatc
    10321 tttaaaagat tttttcggca aaagcgatct aacttataat gtcaatttta ctcatcttca
    10381 aaaactcatc aaagaatatg attttaaacc tttagctttt aaaaaacaaa gtcttgcttt
    10441 aatggatttt ggttttgaag atttattaaa atacacaaaa aataaaaaca ttaaaactta
    10501 cgaaagtttt ttatctcaag ctaaaatttt attttttaat tttgatgaaa aatttcattt
    10561 tttcgaattt caaaaaaact aaaattttat atttttcata ctcgctaaac aaaccccctc
    10621 ccttaaaccc tcatcaatga ctagaagttt atgtttatca aacaaagcat aaaacagcaa
    10681 acaacctgca ctcaaataat tttttctcat cgcgcctact tcttttatag cctttttttc
    10741 ttccatatga aaaagtgtaa tagcataatt taaaaaatcc ttatggtaaa gttttttgcc
    10801 atttactcta cttgcttcat acttttcata gcttatattt tgttttaatg cgctaagtgt
    10861 agtaggaact ccggaattta aaaccaccgt tttaactcct aaagaacgaa gttccttttt
    10921 aatcatagcc acctcatcaa aagccctaaa agctaaatgc tttaaatagg gatttgcaat
    10981 taaaaaatga attttaagtt ttttatcttt aatatttatg ataaatttag gatatttttt
    11041 tattaatttt ttataagaaa tacaagattt ataataagaa tggtaatttt tttcataaaa
    11101 actaataata ccaaaatcaa aacttttaaa actttttcca aaagaaagct cacaagaagc
    11161 ccctcctaaa tcacaatatg caaactctcc ccaaatttta agccttctta aacctgattg
    11221 catacctaaa acactgatct tagcttcact tttggcatct ataagcttaa aatcaatccc
    11281 aaattctttt tttaaatggg caaaaatttc atttgtattg cttgcctttc taaaagctgc
    11341 agtcgctaca gctctcgctt tgcttaaatc ttgctcttta gctaaaatac tcaaagtatt
    11401 ttttaatctt tgtatggctt ctttagaaat ttctccactt tgatttagat ttttcgctgc
    11461 cccaataaca aattcatatt cttttaattt atttaatttt tcatccattt gtactgctct
    11521 taaagtattt gaaccaagat ctatacctaa catgactttc cttatttgat tttatagtat
    11581 aatagcaaaa aaagttctaa aggaaaaata tgcttttagg tgtaaatatc gatcatattg
    11641 cagtgttaag acaagctaga atggtaaatg atcctgatct tttagaagct gcttttatag
    11701 tagctagaca cggggatcaa atcactttgc atgtaagaga agatcgccgt catgctcagg
    11761 attttgactt ggaaaatatt ataaaatttt gcaaaagccc tgtcaattta gaatgtgctt
    11821 taaatgatga aattttaaat ttagctctta aactcaaacc ccaccgcgtt actttagtgc
    11881 ctgaaaaaag agaagagctt actacagaag gggggctttg tttaaatcat gctaaattaa
    11941 aacaaagcat agaaaaactt caaaatgcaa acattgaagt ttcacttttt attaatccta
    12001 gtttagaaga tatagaaaaa tcaaaaattt taaaagccca attcatagag cttcatacgg
    12061 gacattatac gaatttacac aacgcacttt tcagcaatat ctctcatact gcttttgcct
    12121 taaaagaact tgatcaagat aaaaaaacct tacaagctca atttgaaaaa gaattgcaaa
    12181 atttaaaact ctgtgctaaa aagggcgtag agcttggctt aaaagtagcc gcaggacatg
    12241 gtttaaatta caaaaatgta aaactcatag taaaaattaa agaaatttgt gagctaaata
    12301 taggacaaag cattgtagca agatctgtat ttacaggact taaaaacgct attttggaaa
    12361 tgaaagaact tattaaaaga tgaaaaaact agccattagc ataggcgata taaacagcat
    12421 aggacttgaa attttagtgc gttctcatga agaactaagc aaaatctgca caccttttta
    12481 ttttatccac gaaaacttgc ttgataaagc ttcaaaactt ttaaatttaa aactttttaa
    12541 tgcaaaaatc gtagctttta aagatggaaa agactatgaa tttaatttta taaaaaaaga
    12601 aaattctctt gaaatttact ctttttgcct tcctttaggc tttaaagtgg atgaaaattt
    12661 tgaaatcaaa gccggagaaa tagatgcaaa aagtggactt tatggttttt taagttttaa
    12721 ggcggcaagt tattttgtct atgaaaaaca cgcccatgcc ttgcttactc tacctataca
    12781 caaaaaagct tgggaagatg caggacttaa atacaaagga cataccgatg ctttaaggga
    12841 tttttttaaa aaaaatgcca ttatgatatt aggttgtaaa gaactttttg tagggctttt
    12901 tagcgaacat atacctttag ctaaggtgag taaaaaaatc acttttaaaa atttaagcat
    12961 ctttttaaaa gatttttaca aagaaacgca ttttaaaaaa ataggacttt taggttttaa
    13021 tcctcacgct ggagattatg gagttatagg tggagaagaa gaaaaaatca tggaaaaagc
    13081 tatagccttt gtcaatgcct ttttatactc taaaaaagat gaaaaatttt tcaaaaaagc
    13141 cttaaaagat gaaaatttac aaaaagaatt gcttttaaat tttaaaggca agggcgttta
    13201 tctaccctat cctttagtag ctgatacagc ttttaccaag gctggtttaa aaaactgcaa
    13261 tcgtttagta gctatgtatc acgatcttgc ccttgctcct ttaaaggcct tgtattttga
    13321 taaaagcatc aatgtgagtt taaatttacc catcatacgc gtcagcgttg atcatggcac
    13381 ggcctttgat aaggcctata aaaatgctaa aatcaacact aaaagttatt ttgaagcggc
    13441 taaatttgca atcaatttaa accctaaagc ttaaatttag cctagaatca atcaaatctt
    13501 ctttagccaa gctgtctata aaatcttgca aatctttatt ggtatttaaa ctttgagtga
    13561 gtaaattttc atatttatca actttatttt taaaaatttg ctctaaaact tctttaatct
    13621 ttgtatcttt ttttgctctt tgcataagtt ctaataaagc tttagcataa gcttcttgca
    13681 tgcaatcact tgcattgagt aaaggtaaaa taggattttc ctctgctttt gtattttgca
    13741 tattttttat acaaattttt ctttctttaa tcatcttttt tgaaattggc tttaaaatct
    13801 tttttcgtct ttttatctgc tttttttgaa atattttgat acaaactgct atagatgtta
    13861 tctactaaag caagtttttt attttcaaat tcattacgca caccaatttt attgcatatc
    13921 ataagctcat catcactttt gccatcatat ttgattttag agcaatcaaa actaggtttt
    13981 acttcatctt tataaataag ctcatcaaaa ctcaaagccc ctaaactcgc caaacttaaa
    14041 ccaagcaata aaataatttt tttcattatt tacctttaaa atttttattt tattttaaca
    14101 aaaatatttt gaatttttta aggaaattaa gcctttattt tattataatg cgtttttatt
    14161 ttttataagg aacttaaaat gcaaaattac aaaaaagctc tttttgcact agctcttagt
    14221 gctttttgta tgggcgtaac cgaatttgtt atggcaggag ttttggttga tgttgaagcg
    14281 tattttagcg tagatgcaaa aaccgcgggc tatcttacaa ccttatatgc cataggtgtt
    14341 gttataggcg ctcctcttat tactatacct ttaagtcgtt ttcatagaca catacaactt
    14401 ttaagtaatc ttggaatttt tgctctagca aatttcatta tcttttttag ccaaaatttc
    14461 tatcttacag catttgcgcg ttttatagca ggaacacaac atggggtatt ttttgtcatt
    14521 gctaccttag ctgtaagtgc tataacccca gatgataaaa aatcaagcgc tctagctata
    14581 atggtcacag gacttactgt agccttagtt actggagtac cgcttggaac tttcatagga
    14641 cattattttg gctttaaatt tatcttttta cttattttta tcattacaag cttagcattt
    14701 tttggagtat ggcatatgat gcccaaaaat ttacatccta gcccaacaag tcttaaaaat
    14761 ttaatccctg ctttttcgca tcaaaatttg ttaaaaactt atactataac catttgtagt
    14821 tgtggggctc aatttgttct ttatacttat ttgcaaaaat tacttgtaga aataagcggt
    14881 tttaaagtcc aagatacagc ttatatcttg ctcttatatg gaatttgtgc aatttgtggg
    14941 aatttatggg gcggaaaaat agtagataaa aaaggtgcta ttttttcttt gcgtcttatt
    15001 ttaagcatac aagttctagt atttttaagc gtatttctca ccatgcattc taaaatttta
    15061 atcattttta gcgtagcttt gataggattt tttgcctttt caaccatacc tgcgctaaaa
    15121 atgcttagca ttactaaagc taaacgccac acttataaag tcatagacag cacagtaagt
    15181 gtgaatgaag cagcttttaa tgtaggcata gctttagcaa gttttttagg tgggattgtt
    15241 ttagcaggat tgggtataga atttaatgct ttattttcgg cactttttgt aagccctgct
    15301 ttgatttttg ccttactttt tgccaaagat aaattaaatt ataaaaaatt tcaaagaaaa
    15361 agttttaaaa agatataaat tggaatagaa attgcttgtt tatttaatgt aaagttaaat
    15421 aaaggaggag aaaatggtag tagataatac tcaaaaaaca tcaaatgcta tctttagtac
    15481 cacaacaaag gttaaagaga aaaatacttc agcagatgaa tttcaagcca cattaaatga
    15541 agtaaaaaac aaagaagaaa aggaagaaga aaaaacaagc tcaagcaaat ttactaacga
    15601 agatattgat cttagtgctg ctagagaaga ttttagatct tatgcttggc aaaaaatgag
    15661 agaagatcaa tacaaaaaaa atgaggagac tttgctaaat aagctttttg ctacaattga
    15721 cgcaggaaat gccacaaaca atacaaaggc ttaatataca aatcaaaact caaactacac
    15781 aaacgagaat tccaataatt ctcgtaaaat ttctcataac tctggataaa atgaaaaaat
    15841 ttattatttc ctccatatga agaaaatata gaaaaattga ccaatttaat ttatcaaatt
    15901 ctgttataat tttgctaaaa acaaaggaaa ataatgattt ttattgatgc ttgctttaaa
    15961 aaacctacac cttacacccc tatttggatg atgcgtcaag caggaagata tttgccagaa
    16021 tatatggaag taagaaaaca agcgggtgat tttctctctt tatgcaaaga ctataaaaaa
    16081 gcttctgaag tttctttaca gcctattgat attttagatg tagatgcagc aatcattttt
    16141 tcagatatct tagttgttcc tcttgaaatg ggtatgaatt tacgttttga aaaaggagaa
    16201 gggcctgttt ttgataatcc tatttcaacc ctagaagact tagaaaaact tgacgatcaa
    16261 aatgcacata aaaaattaaa ttatgtctat gatgccttaa agcttactag agaaaaatta
    16321 tctcaaaaca aggctttaat aggattttgc ggaagccctt ggactatagc tacctatatg
    16381 atagaaggaa gtggaagtaa aaattatgca aagtgtaaaa aaatgcttta tcaaaaccca
    16441 gaacttttac ataaaattct aaacaaacta actcaagttt taaaacttta tttagaagag
    16501 caaattaaag caggtgctaa tgctatacaa atttttgata gctgggcaag tgctttagaa
    16561 tacgataagt tttttgaatt ctcttttaat tatatgcttg aaatttcaaa ttttattaaa
    16621 ggcaaatacc caaatatacc tgtaatttta ttccctaaag gcattagcgg ttatttggat
    16681 agaatcgatg gtaattttga tgtttttggg gttgattgga gcactccgct tgatttagca
    16741 cgtgataaac tatcacacaa atacactctt caaggcaaca tggagccttg tagactttat
    16801 gataaaaatg ccatcaaaga aggagtggaa aaaatactaa aaaccatgca aaataaagct
    16861 catattttca acttaggaca tgggatcttg cctgatattc ctgttgaaaa tgcaaaatat
    16921 tttatcaagc ttgtacaaga aagttcagct aaatgaaaat actctttggt cctgttagct
    16981 caaggcgttt tggaagatct ttgggtatag atttaagccc tagcaaaaaa caatgcaatt
    17041 ttgattgtgt ttattgtgag cttgatccaa aaaaagccca agaaaaacag gatgaaatta
    17101 tcagcataga taaaattatc tccgaagtta aagttgtgct tgaaaaaaat gttgaatttg
    17161 attttcttac ccttactgct aacggagagc ctagtcttta tcctcattta aatgagctta
    17221 ttttatcttt acgcagcatt gctaaagata aaaaattgct tattttaagc aatggcacag
    17281 ctgtattaga cgaagacaaa tttaatgctt tgctaaaact agatgtggtc aaatttagcc
    17341 tagatagtgc agttgctaaa actttttatc gtattgatag agctttaaaa aacatagatt
    17401 tagaaaaaat gatagaaaaa atggcagatt ttagagctag atttaacgga gatttgatta
    17461 tggaaattct agttgttaaa gatcttaatg acaacgaaga agaatttgaa gcacttaatc
    17521 aagctttaaa aaaaatcatg cctttaaggg ttgatctaag caccatagat agacctcctg
    17581 cttatgccgt taaaaaagta agcgaagaaa aacttttaga actttctaaa cttatagatt
    17641 ctactcctgt actcttagcc aaaagacatt atgaaggtga aaaactaagc ttcaatgaag
    17701 aagaattatt aaaaatgctt catttgcgct cacaaagcga aatagacatt gaagtgaaat
    17761 ttgatgaaca atccaaaact ctcttaaatc aacttatcaa agaaaaaaag gtaaaaattc
    17821 tcgatttagc tggagttaaa ttttataaag cttaggcctt tggtaaatac tttctaagta
    17881 aagttataag atcatttcta cttacatcac ttaaaacttc gctcacacaa tcaaaatcct
    17941 caactttttc ctttgaaaaa aagatgatat ggctttgtgg atgctgtttt ttataagcac
    18001 ttaacaaatt tctcatttgc tcaagatcaa atttaattaa ttcataatca agcaaaatca
    18061 aacgataagt ctccttgctt aattcttgtt ttaattgact aaaagaattt atacata
//
LOCUS       DAEBKH010000018        16855 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.018, whole genome shotgun sequence.
ACCESSION   DAEBKH010000018 DAEBKH010000000
VERSION     DAEBKH010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16855)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16855)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16855
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.018"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..344
                     /locus_tag="KIL20_000426"
     CDS             <1..344
                     /locus_tag="KIL20_000426"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720481.1"
                     /translation="NITINKFLNSNFNISHFIQKNLDLKIQNLILEKNKQNISLQGNL
                     NINNSYQAKLQVISSDEPDEIFPWTKDYGGLNQYFLKENNNFFLNLSYDSLANPQLKI
                     NGSEFSNMDLN"
     gene            344..1525
                     /locus_tag="KIL20_000427"
     CDS             344..1525
                     /locus_tag="KIL20_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HBD2720482.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQE
                     KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLDEKHISLENLKKLRNTISSEGVSSK
                     DTHYILASAMIKSLRGSDIDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNA
                     LNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHK
                     A"
     gene            1588..2316
                     /locus_tag="KIL20_000428"
     CDS             1588..2316
                     /locus_tag="KIL20_000428"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HBD2720483.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQAQISILYDKGGNLEELFE
                     KSDVIIDFSSPSGTHELLNYARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLKNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            2318..3655
                     /locus_tag="KIL20_000429"
     CDS             2318..3655
                     /locus_tag="KIL20_000429"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HBD2720484.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYVVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNTEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(3658..5043)
                     /gene="fliI"
                     /locus_tag="KIL20_000430"
     CDS             complement(3658..5043)
                     /gene="fliI"
                     /locus_tag="KIL20_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HBD2720485.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEVSKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDTPNTPLPPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(5043..5615)
                     /gene="folE"
                     /locus_tag="KIL20_000431"
     CDS             complement(5043..5615)
                     /gene="folE"
                     /locus_tag="KIL20_000431"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HBD2720486.1"
                     /translation="MQKKFEDCVKTILEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKEILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGVQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            5759..7093
                     /locus_tag="KIL20_000432"
     CDS             5759..7093
                     /locus_tag="KIL20_000432"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HBD2720487.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RPGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKESKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLDGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFMPKTEKSEKASKKEKEDK"
     gene            7093..7677
                     /gene="clpP"
                     /locus_tag="KIL20_000433"
     CDS             7093..7677
                     /gene="clpP"
                     /locus_tag="KIL20_000433"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HBD2720488.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            7713..8240
                     /locus_tag="KIL20_000434"
     CDS             7713..8240
                     /locus_tag="KIL20_000434"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HBD2720489.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            8237..9742
                     /locus_tag="KIL20_000435"
     CDS             8237..9742
                     /locus_tag="KIL20_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HBD2720490.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASVAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFTSPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLSEVLMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFGKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNINKTHILEALSFRARN"
     gene            9744..10442
                     /locus_tag="KIL20_000436"
     CDS             9744..10442
                     /locus_tag="KIL20_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HBD2720491.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYESYY"
     gene            10426..11796
                     /locus_tag="KIL20_000437"
     CDS             10426..11796
                     /locus_tag="KIL20_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HBD2720492.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIKKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCQKEPDFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITLCMGALKEILLEDFAKEFVGRIKIANLGISSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANVSAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKE
                     FIKLYKMCFDENLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            11787..12353
                     /gene="purN"
                     /locus_tag="KIL20_000438"
     CDS             11787..12353
                     /gene="purN"
                     /locus_tag="KIL20_000438"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HBD2720493.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCLCNKKD
                     AFGIQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLSGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            12425..13144
                     /locus_tag="KIL20_000439"
     CDS             12425..13144
                     /locus_tag="KIL20_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HBD2720494.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            13137..13346
                     /locus_tag="KIL20_000440"
     CDS             13137..13346
                     /locus_tag="KIL20_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HBD2720495.1"
                     /translation="MAKDANGTELNAGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            13356..14540
                     /locus_tag="KIL20_000441"
     CDS             13356..14540
                     /locus_tag="KIL20_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HBD2720496.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFCIINAYNETLKIYKDLAKQYRYKMYV
                     IVFDNSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSSDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKIANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDGGYLRVVTLDKKGFECIEIKNQIYK
                     KK"
     gene            complement(14553..15911)
                     /locus_tag="KIL20_000442"
     CDS             complement(14553..15911)
                     /locus_tag="KIL20_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HBD2720497.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSILMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTIAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWILFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELSHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPIVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(16010..>16855)
                     /locus_tag="KIL20_000443"
     CDS             complement(16010..>16855)
                     /locus_tag="KIL20_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HBD2720498.1"
                     /translation="SANDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREAMTFS
                     YLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSLSDVV
                     SKALFANLSENSSFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQKAEA
                     AFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMIVIVP
                     FLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSVFITNWTTITQLRSIYKRLKEFEKN
                     ISYKS"
BASE COUNT         6191 a         2372 c         2790 g         5502 t
ORIGIN      
        1 ttaatataac cataaataaa tttcttaact caaatttcaa tatctctcat tttattcaaa
       61 aaaatcttga tctaaaaata caaaatttaa ttcttgaaaa aaataaacaa aacatcagtc
      121 tacaaggcaa tttaaatatt aacaactctt atcaagcaaa attacaagtt atcagttcag
      181 atgagcctga tgaaattttt ccttggacaa aggattatgg aggtttaaat caatattttt
      241 taaaagaaaa taataacttt tttctaaatt tatcttatga tagcttagcc aatcctcagc
      301 taaaaattaa tggtagtgaa ttttcaaata tggatttaaa ttaatgagcc tagctttgac
      361 ctttcgccct gaaaattttg atgatatttt aggacaatat gagcttatag aaattttcaa
      421 aaaatttact gctttacaaa aacttcctca tagcattttt tttggaacag caggttctgg
      481 aaaaacaact tttgctagag ttgtagcaaa agaatttggc ttagattttt atgaatttga
      541 tggaggaaat tttaaactcg aagaactaag aaaaatttta gacaattata aaaatagtct
      601 ttataagcct ttaattttta ttgatgaaat tcaccgcctt agcaaaaccc aacaagaaat
      661 gcttttaatt cctatggaaa attaccgttt aattttaatc ggtgcaagta ctgaaaatcc
      721 ctattttgtt ttaagttctg gcataagaag tcgttccatg ctttttgaat ttaaatcttt
      781 aggggtaaag gaacttgaaa ctttactctt gcgtgtacaa gaaaaaatga aatttagtat
      841 tgataaagaa gctaaagatt ttctacttaa aagtgctgat gcaagagcta tgctaaattt
      901 gcttgaattt gtcttggttt tagatgaaaa acatatcagt cttgaaaatc ttaaaaaact
      961 tcgcaacacc ataagtagcg aaggtgttag ttcaaaagat acacattata ttttagcaag
     1021 tgcaatgata aaaagtttac gcggaagtga cattgatgca gctatttatt atcttgcaag
     1081 acttattgat gcaggagaaa gtgcggattt tatcgctaga cgtttggtga ttttttcaag
     1141 tgaagatgtt ggaaatgccg atccaaatgc tctaaattta gcagtttcga ctctagaagc
     1201 tgttaaaaat ataggttatc ctgaagcaag aattatccta gcccaatgcg tagtttattt
     1261 agcaagcaca atcaaatcta atgcaagcta caaagctatc aatgaagctt taaactatgt
     1321 aaaaaataat gaagctttag aaatacctaa ttatcttaac aacaatcatc aagaaaaaca
     1381 aaactatctt tatccgcatg attttggtgg ctgggtagag caaaaatatc ttagtaaaaa
     1441 tttaaaattt tatcatagca agggcttagg agaagaagca aaattgttag ataatttata
     1501 taaattaaaa aaccataaag cttaatttta ttatttaaaa tttacaaaat aaatgctaaa
     1561 atcaatattt tattttcaag gaaaaagatg attaaaatag gaatttatgg cgctaaagga
     1621 cgcatgggaa aacagattga agaatgttta aaaagcgaaa cacaagcaca aatttcgata
     1681 ctttatgata agggtggaaa tttagaagag ctttttgaaa aaagtgatgt gattattgat
     1741 ttttcttccc caagtggaac tcatgagctt ttaaattatg caagaactat gcctaaacct
     1801 ttggtaatag gtacaacagg acttgatgag aaaattttac atttgatgca aagtgctagt
     1861 gaagtgatgc cgatttttta tgcgaccaat atgtctttag gtgttgcagt tttaaactat
     1921 cttgctagca aagcaagtca aatgttaaaa aattttgata tagaaatttt agaaatgcat
     1981 catcgccata aaaaagatgc accaagtggt acggctatga ctttagccca aagtgtagca
     2041 aaagctagaa atttagaact tgaaaaagta agagtaagtg gaagagatgg catcataggt
     2101 gaaagaagca aagatgagat tgctgtgatg agtttaaggg gtggcgatat agtaggacgc
     2161 catacagtag gtttttatga agatggtgag tttttagaac ttaatcatac cgctacttca
     2221 agggcaactt ttgctaaagg tgcgattaaa atcgctattt ggcttagtaa gcaagaagca
     2281 aaaatgtatt caattaatga ttttttagga atttaaaatg tgtgcagttg taggagttat
     2341 caattcaaaa aatgctagca cttatgcgta ttatgcgctt tttgctatgc aacaccgtgg
     2401 gcaagaagca agtggtatca gtgtaagcaa tggtaaaaat attaagacta ttaaagccaa
     2461 aggtgaagtg agtcaaattt ttaatcctga taatctaaaa actttagagg gtgaaatcgc
     2521 tatagggcat aatcgctatt ctacagcagg aaattcaagt ttaaatgacg ctcagcccat
     2581 agcagctact tcagttttag gtgatattgc tttagcgcat aatggaaatt tagtcaataa
     2641 agaagaggta agatcaagac ttattcaaga tggggctatt tttcaaacca atatggacac
     2701 agaaaatgtt gtccatctta tcgcaagaag taagcaagaa agtctaaaag atagatttat
     2761 tgagagttta aaagaatgta taggagctta ttgttttgtt ttagcaagca aagataaact
     2821 ttatgttgta agagatcctc atggggtgcg tcctttgtct ttagggcgtt taaaagatgg
     2881 aggctatata gttgctagtg aaacttgtgc ttttgatctt atagaggctg aatttattcg
     2941 tgatgttaaa ccaggagaaa tgcttatttt tactcaggga aatgataaat ttgaaagcat
     3001 agaacttttt tctcaaactc ctagaatttg cgcttttgaa tacatttatt ttgctagacc
     3061 tgatagcata gtagaaggca aaagcgtgta tgaagtgcgt aaaaaaatgg gcgaagcttt
     3121 agctaaaaaa tttgcttata aagcagactt tgtcgtgcct gtgccagata gtggagtaag
     3181 tgcagctata ggttttgctc aatatttaca aatccctctt gaaatggcaa tagtaagaaa
     3241 tcattatgta ggaagaactt ttatagagcc aactcaagag cttagaaatt taaaagtaaa
     3301 attaaagctt aatcctatgc gtaaagtttt agaaggcaaa gaaatagtag tcattgatga
     3361 tagcttggtg cgtggcacta cttctaaaaa aataatttct ttacttcgtg ctgcaggagc
     3421 gagcaaaatc catcttgcca tagcttgtcc tgaaatcaag tttcctgata cttatggcat
     3481 agatactcca acttttgaag aacttatcag tgcaaataaa aatactgaag aagtgcgtga
     3541 atatgtagaa gccgatacgc taagtttttt aagtatagaa gaattaactc aaagcatagg
     3601 cgatgaaaga aaatattctt taatcagttt tgatggagat tattttatta aataatttta
     3661 ttttaaatta ggattaggca aggttgcact tgcacttcct acatttatat tttgagttgg
     3721 tggcaaagga gtatttggtg tatcaatttg acttaaaagc tctaaagttt gattaaattc
     3781 aaagctttct tcaggatttt ggcctaagaa tttttgcata aattcttttt tagaaatagc
     3841 ttcatcaagt tctttatcac ttcctttctg ataagcaccg atgcgaagca atacttcatt
     3901 ttcttttaaa agcgagttta aacgcttaaa ttttcttgcc caaagtttat gctcaggact
     3961 tataatgtca ctcattaccc ttgaagcaga gttttgtata ttaataggag gataaattcc
     4021 aaagtctgtt aattcacgac ttaaaacaat gtgtccatct aagatagaac gactttgatc
     4081 ggcgattgga tcactcatat catcgccatc caccaaaacg gtaaaaaagg ccgttatagt
     4141 gcctttacct tcttctttac ccgttctttc catgagttga ggcaaaagac ttaaaacact
     4201 tggtggataa cctttggttg taggaggttc tccaagagct agtcctattt ctctttgcgc
     4261 catagcaaaa cgtgttacac tatccatgat aaaaagtaca tctttacctt gttctttaaa
     4321 gtattctgcc acactcattg cgcaaaaagc accgtattta cgcattaaag cactatcatc
     4381 acttgtagca acaataatca ctgtatcatc gagctttcca cctaaatttt tttgtataaa
     4441 ttcaggaatt tcacgccccc tttctcctat gagtgccact acctttatag gagctttgga
     4501 atttttaact atcattccca taagagtgga ttttcctact ccgcttcctg caaaaatacc
     4561 aagtttttgc cctacaccac aagttaaaag tgcgtctatg gttttaacac ccacgggaaa
     4621 aacttcttct ataagccctc ttttcatcgc atcaataggt gcacgcatta taggcatata
     4681 tttacttact tctatagctc ctttaccatc ttttggacgc ataaaaggat ctactaccct
     4741 gcctaaaagt tcatcgctaa cgcctatttg catacctgca tcacttatga aagcacgatc
     4801 gcctatttta aaaccctcta taaaagaaaa agggcttaaa tagctaaatt gttctttgat
     4861 ttctacgacc atagctagag tgtttaaatt ttcattttca ttggaaacta gcttcactat
     4921 atctccaacc cctgttttaa gcccacgaat ttctatactc gtagcagaaa tttttgtaat
     4981 ctctccaaaa atagcactta aattttcttt gccaagtttg gagcgtagtt tttcaagatt
     5041 cattaaaatc ttacctgttt agcagagttt atgagagaaa aaaattcttc tctagttttt
     5101 tcatttttta agaaaattcc acgcaaagct gaagttgtag tggtggaatt agctttttgt
     5161 actccacgca tttcaacaca catatgtctt gcttctatga ctacgccaac acctttggca
     5221 tcgacatttt ccattaaagc ttgtgcgatt tgttcggtaa gttgttcttg aatttgaagt
     5281 cttcttgcaa acacctctac aaggcgtgga attttgctta aacccactac ttttttatta
     5341 ggaatatagg ctacatgagc acgcccaaaa aaaggtaaaa gatgatgttc gcaaagacta
     5401 taaaattcta tatcacgcac taaaaccatt tcattattag agctttcaaa taaagcgtca
     5461 tttaaaattt ctttgacatt ttgtgtataa ccactagtaa gaaattcata agctttaaaa
     5521 acacgatttg gtgttttaat cagtccttca cgatttggat tttctcctat aatttcaagt
     5581 atggttttaa cacaatcttc aaattttttt tgcaaatttt tctccaaaaa atatttttat
     5641 attttaataa taatgtaata ttgcaatttt atcataaatt actttaaaat tttatgcaag
     5701 caataaggaa aaatttgcta tcattgaaag caaattttat tttataagga aaaaaactat
     5761 ggaagtaaag gcaaagcaac tagattctgt taatgcgact gctagtgtaa aaattccttc
     5821 aggaatgatc aaaagtgaag tagaaaattt agcaaaaaaa gcttctaaaa gtgtaaaaat
     5881 ggacggtttt agaccaggaa aagttcctgt aagtgctgta cttaaaagat atgaaagaga
     5941 actcactcaa gatgcagaac aaaatctttt taaatccgct gtaaatagtg ctttacaaga
     6001 acttaaaaaa gaaagtaaag agcttgtagg tgagccatat tttgaaaaat ttgatcgtaa
     6061 agatggagaa attattgctg agttaatact ttcttttaaa cctgaaatta aacttgatgg
     6121 ttatgaaaaa cttatccctg aatatcaaac tccaaaagta agtaaaaaag aaattgatga
     6181 gaaaaaagat gaacttttaa agcgttttgc tactcctgaa gctataaaaa caaaaagagc
     6241 tttaaaagaa ggtgattttg caaaatttga ttttgaaggt tttgtggatg ataaagcttt
     6301 tgaaggtggt aaagctgaaa attatgtttt agaaattggt tctaagcaat ttattccagg
     6361 ttttgaagat ggtatggtgg gaatgaaaat aggtgaagaa aaagatatca aagtaacttt
     6421 ccctaaagaa tacggtgcgg cgcatttagc gggtaaagat gcagtattta aagtaaaact
     6481 acatgagatt caagagctta aaattccaga acttgatgat gaaatgctta aaaaactttt
     6541 accaggagaa gaaaaagcta gtgttgaagt tttagatgaa aaattaaaag agcaaatcaa
     6601 aaatgaaaaa cttttcaaac ttgtaaatga tgaattaaaa ggcaaatttg cagatgcttt
     6661 gattgaaaaa tataattttg atttacctaa aggcatagta gaacaagaaa ctgatatgca
     6721 aatgcgtgcg gcttttaata cttttagcga aaaagaaatt gaagagctta aagcaagtaa
     6781 agaaaaatac caagaaaaac gtgattcttt taaagaagaa gcgcaaaaaa gtgtaaaact
     6841 tacttttatc attgatgagc ttgcaaaatt gcgtaagatt gaagtaaatg atcaagaatt
     6901 gattcaagcg atttattttg aagcatatcg ctatggtatg aatccaaaag agcatttaga
     6961 aaactataaa aaacaaggag ctttacctgc tgtgaaaatg gctttgattg aagaaaaact
     7021 ttttaatgat atttttatgc caaaaacaga aaaatcggaa aaagcgagca aaaaagagaa
     7081 agaagataaa taatgtttat tccttatgtt attgaaaaat ctagtcgtgg tgaaagaagt
     7141 tatgatattt attcacgtct tttaaaagat agaattatta tgttaagtgg tgaaattcat
     7201 gatgaacttg ctgcttctat cgtagcacaa cttctttttt tagaagctga agatcctaca
     7261 aaagatattt atctttatat taattctcca ggtggtgtaa ttacaagtgg ttttagtatt
     7321 tatgatacta tgaactatat caaacctgat gtttgtacga tttgtatagg acaagctgct
     7381 tcgatgggag catttttgct tagttgtggc gcagaaggaa aacgctttgc tttgcctaat
     7441 tcacgcatta tgattcatca acctttaggt ggagctagag gtcaagccac agatattgaa
     7501 attcaagcca aagaaatttt aagacttaaa actatactta atgatatttt ggcaaaaaat
     7561 actaagcaaa aagttgcaaa aatagcaaaa gatacagaaa gagatttttt catgtcagca
     7621 caagaagcta aagaatatgg gctgattgat aaggttttgg aaaaaagttt taaatgattt
     7681 ctttggagat catttaaaac aaaggttttt taatggttag aaaaattatc acttatccta
     7741 atcctagact ttttttaaac tctgaaattg taaataaatt tgatacagaa cttcacacct
     7801 tgcttgatga tatgtatgaa actatgatag caagtaatgg agtaggttta gcggctattc
     7861 aagtggatat tcctttgcgt gttttacttg taaatatttt tgatgaaaat gatgaacaaa
     7921 aaaaagaaga tttgctagag attatcaatc ctgaaattat tcctttagat gaagaaatga
     7981 tcacttgtac cgaagggtgt ttgagtgtgc cagatttttt tgaagaagtg aaacgctata
     8041 atcatatctt gcttaaatat caagatcgct ttggagaatt taaagaactt gaagcaaaag
     8101 gttttttagc tgtggctatt caacacgaaa atgatcattt gaatggacat ttatttatag
     8161 aaaaaatttc ttttgctaag cgtcaaaaat tcgataaaga atttaagaaa aagaagaaaa
     8221 atcataaaaa agagaaatga aaaaactaaa gtgcataagc tttcatgaag gcttagacat
     8281 tatagaggta gaatccactt ttacaagagg tttgccaaat ttaagcatag taggacttgc
     8341 aagtgtagcg attaaggaaa gtgtcgaacg catcaaagcc acacttttaa gttgtgattt
     8401 tgcttttcct gctaaaaaaa ttactatcaa tcttagtcct tcaggcatcc caaaaaaggg
     8461 atcgcatttt gatttggcta tcgctttatt aatccttttg caaaatgaag aattagatga
     8521 cttttttgta gtaggagaat taggacttga tggaagtatt aaaagcacaa atgagctttt
     8581 ttctttgctt ttgtttctct ctgctaaaat taaaaaagct aaaattgttg ttccaaaaag
     8641 tatagcacaa aaagcttcca tgataccaaa tttagaggtt tatggacttg aaaatttaaa
     8701 tgaagcaata gagtttttta aagaaaaaaa ttatgaaaat tttcgttttt ctcacaatca
     8761 tcctttattc acaagccctt tacaaataga aaatgaaatt tttttacaaa atatggattt
     8821 taaacttgat tttaaagata tcaaaggaca ggaaaaagcc aaaagagctt gtatgatagc
     8881 tgctttaggt atgcataata tcttatttga aggaagtcca ggaagtggta aaagtatgtg
     8941 tgctaaacgc cttgtttata tcatgcctcc tcaaagttta agtgaagttt taatgcaaaa
     9001 tgcttatatg tctttagatt caaaagattg tgaatttact aaaattcgtg cttttcgtca
     9061 tcctcatcat acttctacaa gagcaagtat ttttggcgga ggaacaaaaa atgctagaat
     9121 tggagaagtc gcacttgcaa atggtggagt attgtttttt gatgaatttc cacattttaa
     9181 caagcaaatc atagagagtt taagagagcc tttagaggat cataaaattc atatttcaag
     9241 agtaaattct aaaatcactt atgaaacaaa atttagcttt atagctgccc aaaatccttg
     9301 tccttgcgga aatttatttt ctaaaaatct ttcttgtgtt tgtagtgaaa atgagattaa
     9361 aaaatacaaa aatcacattt cagctcctat tatggatagg attgatcttt atgtagctat
     9421 ggatgagatc agcaaggatg ataaaacgag tataagttct aaagaaatga gtgaaaaaat
     9481 tttacaagct tttatttttg gtaaaaaacg agggcaaaaa gaatttaatg ggaaattaaa
     9541 agatgaagat ttaagtcgtt tttgtgtact agaaaaagat gccaaagata cgctagattt
     9601 agcaatttca cgttataatc tttctttgcg atcgcttaat aaaattttaa aagtttcaag
     9661 aagtatagcg gatttagaac aaagtcttaa tattaacaaa acccatattt tagaagcttt
     9721 aagctttaga gcaaggaatt aaaatggaaa ataaaagtat agctatcttt atagatgcag
     9781 aaaatatccc tgcaaaatac gctaaaagta tttttgatat cgcttcagat tacggagagg
     9841 ttatcattaa acgcatttat ggggattgga ctcaaaaaaa tatacaaggt tggagagagc
     9901 aaattgctga atattcttta atcgctatgc aacaatttaa ttttgcagcc aacaaaaact
     9961 caagcgatat gtatttaatc actgaaatca tgtccatatt ttatgaaaaa aacatagata
    10021 tttttgttat tgtttcaagc gatagtgatt atacttcact cattcaaaaa ttaagagaaa
    10081 ataaaaaaca agttatagga atggggcttg aaaagtctat aaaatcctat gtaaatgctt
    10141 ttagtgaatt tttttattta gataaagatg agagtaaaaa agaagatatt ttaagtaagg
    10201 attatttaag agctttaatc aatatcaccg aacagcttat cgatgaaaaa gggcgcgctg
    10261 aatacgcaca aatccgcact aatatgaacc gcaaatactc ggattttcat ccgcaaaatt
    10321 atggttttaa gaattttcgt gctttgatcc agaaattttt acccaaaatg aaaaaatttg
    10381 aagaagaaag agaaaaaaat atatattttt tggtgaaaaa agattatgaa agctattatt
    10441 gataatataa aaattttaga acaaaatgct ataaataaag gcttagatga gcttatttta
    10501 atggaaaatg caggattaaa tttagccaag ctgattaaaa aagaagctaa aaaaattcgc
    10561 attcaacgca agattaaaaa agtaaaaata ctttttttat taggtggggg taacaacgct
    10621 tcagatggct tggtggcttt aagaaattta aaacacgcta aagcttataa aataggcttt
    10681 aaagaaaata cgctttttaa aaaacaagag caaattttac aaaattatgc ttttaaattt
    10741 tgccaaaaag aacctgattt taagaaattt catattatta ttgattgtat tttaggcaca
    10801 ggttcaaatc gttgtttaga tgaaaaaaca agtttaatca ttcaaaaagt taatcaaagc
    10861 aaagctttaa aaatagcttg tgatatacct acaaatttgg gattttatcc ttgttttaaa
    10921 gctgatatta cactttgcat gggagcttta aaggaaattt tacttgaaga ttttgctaag
    10981 gaatttgtag gaaggattaa aatagccaat ttaggcatta gctctaagaa attttaccct
    11041 aattctcaag cttttttgct tgaaaaaaaa gatttaaaaa ctatagatag aaaaatcaac
    11101 gccaataaag gaaattttgg ccatatttat atagttgcca atgtaagtgc tggaacttta
    11161 gcaggacttg gagccttaaa ttttggagca ggtcttgttt ctttagtagc acaaaaaagt
    11221 ttctcgcctc ttttgatgtt aaaagaaaaa attgaaaata atgcaagtgc tattgcttta
    11281 ggtatggggc ttgaaaattt ggattttcta aaagatgaaa ttttgcaaaa cactcctttg
    11341 atcttggatg caaactgctt tttaagtgaa gctttgcttt ggtatttaaa cagaaaagat
    11401 gttgttataa cccctcatcc aaaagaattt ataaaacttt ataaaatgtg ctttgatgag
    11461 aatttagata tagaaacatt gcaaaaaaat cgctttttct atgctagaaa attttcacaa
    11521 aattatgatt gtgttcttgt tttaaaagga gcaaatccta ttattgtgca aaaagaaaaa
    11581 ttatttgttg taaatttagg aaatcaagcc ttagctaaag gtgggagtgg agatgtttta
    11641 agtggaatga ttgctgcaca tttaggtttt ggttttagtg ctttagaagc agcaaaaaat
    11701 gctactttag ctcatggact tgttgcaaaa aaatataaat ttaataaaaa tagctttgac
    11761 gctttaaaac ttatcaaagg attaaaatgc ttgtaaaatt agctgtactt tttagtggaa
    11821 atggaagtaa tttagaaaat attttagaaa aacttcataa aaaaaccata ggggaaaata
    11881 cctatgaagt agtactttgc ctttgtaata aaaaagatgc ttttggtata caaagggcaa
    11941 aaaaatttgg tcttgatact gtcattgttg atcataaggc ttataatact cgtgaagaat
    12001 ttgatacgat tttggtacaa aaaatcaaag aaagtggagc aaatcttact gtattatcag
    12061 gttttatgag aattttaagt cctgttttta caaaaaatat taaggcaatt aaccttcatc
    12121 cttctttatt accccttttt aaaggagcac atgcgattaa agaaagttat gaaagtgata
    12181 tgaaagtggc tggtgtgagt gtgcattggg tcagtgaaga acttgatggt ggaatgatta
    12241 tagctcaaaa agcttttgaa aaaagaaatt tgagttttga agaatttgaa gaaaaaattc
    12301 atagcctaga acatgaaatt ttacccttaa gtgtgattga aattttttct taaagaatta
    12361 aaggtatttg ctttaaaact ataaaatatc gctttaaaaa attttaaaat tttcaaggaa
    12421 atttatgttt gaatggatat ttagtattga tgcttggatt actttagcta ctttaagtgc
    12481 tcttgaaatt gtactaggga tagataatat cattttttta gctattttag taagcaaact
    12541 accccctgaa catcgtgata aaggacgtat cttaggttta gcttttgcaa tgattacaag
    12601 aattttactt cttttatctc ttttttgggt gatgaaactt gtaacacctt tgtttagtgt
    12661 attgggcaat gaaatttcag gaagagatct agttctttta ctaggtgggc ttttcttgat
    12721 tgtaaagtct attaaagaaa ttaaagagca aatttctcat caagaagaaa gtcaaagtca
    12781 ttttaaagca agcaataaac tttggatagt tgtagctgaa attgctgtga ttgatatagt
    12841 attttcactt gatagtgtta ttaccgcagt aggaattgct caagatgtaa ccatcatgat
    12901 tatcgctgtt attatcgcag tagctgtgat gctttttgct tctaaaccta tagcagattt
    12961 tgttgaaaaa tatccaagca ttaaaatttt agccttagct tttttggtgt taataggcgt
    13021 agttttagtt gctgaaagtt ttgatattca tattgataag gcatatattt ataccgctat
    13081 ggcttttgct ttagtggtgc aaattttaaa tattttagat caaagaaagg aaaaaaatgg
    13141 ctaaagacgc taatggaaca gaacttaacg caggtgatag cgtgagtgtg ataaaagatc
    13201 ttaaggttaa aggtgcaagt acaactttaa aacgtggaac tactataaaa aatattaagc
    13261 tcacttctaa agaaggtgaa attgaggcta gagtagataa atttggcgtt attgttttaa
    13321 aaactgaatt tttaaagaaa atctaggcaa agaatgtgcg aatcttactt gttttaagag
    13381 ggaattatta cgcaggacaa gaagaattta tcaaaaataa taaacttcaa aattatacac
    13441 ttgatttaaa tgctttgcgt cttttatcag gaagcgttaa aaatatagtc agtgaatata
    13501 aaattttaaa tgttaaaaat gatgaagatt tgagtaaaat tttactcaaa cttctagaaa
    13561 tgcgtatgca aaaaggtgag ttttgcatca taaatgctta caatgaaaca ttaaaaattt
    13621 acaaagactt agctaaacaa tatcgctata aaatgtatgt tattgttttt gataactctt
    13681 taaaacaatg tcaagaaaaa aatcttttag aagctaaaaa aaatggatat atcatccctt
    13741 atgctctttt ggaaaaaact caagatttac tcaaaaaaaa tccaaaaaaa tacccaattt
    13801 tagactcgag cgactggaaa aaatgtcttt accaaatgcc aaatttaagc aaatataaaa
    13861 aaattcatca tataggagat ttacaaggtt gttatagtgt tttaaaagaa tacattaaaa
    13921 caatcaaaga agatgaattt tatatatttt tgggagatta tatcaacaga ggtatagaaa
    13981 atggcaaagt aataaaattt cttttaaaaa tttgcgaaaa agaaaatgta tgcttattag
    14041 aaggaaatca cgaaagacat cttataaaat gggctaatgg agaattgtca aattccaaag
    14101 aatttaatga aaatacttta aaggatttta gaaaagaaaa acttactcca agagatgcta
    14161 gaaaactcta tcctcatcta aaagaatgtt tatactacaa attccaaaat aaattcatat
    14221 tttgttcaca tggaggagta aattttatac cctccaaacc tgaaaaaata agttttatac
    14281 caagccatga ttttatttat ggtgtaggtg gatatgaaga cagtcaaaaa atagcaaatc
    14341 aattttgtaa tttcacctcg gacaatcttt atcaaatctt tggacacaga aataaagaaa
    14401 aacttcctat gaaaatagcc aaaagagtat ttttatgcga gggtaaaata gatgatggtg
    14461 gatatttacg cgtagttaca ctagataaaa aaggttttga gtgtatagaa attaaaaacc
    14521 aaatttacaa aaagaaataa gcctaaagag gcttattctt catctttatt tgttttttta
    14581 accaccttaa cacgctctat agaattccca tccatttttt taacttcata gtaacaaagt
    14641 tcatcttcaa tgcgatctcc tactataggc aagcgtccta aaagattaaa tacatatcca
    14701 cctatagtaa cttgttctaa atcctcatca tagtttatta caagcatttc ttcaacagtt
    14761 tctatatcgc atcgtccttg aaattcatag atattttcag caagtttttt atagctgtct
    14821 tcttcatgct cgcttttaat ttcgccaata atttcttcca tgatatcttc catggttaaa
    14881 attccagcag ttccaccata ctcatcaact actaatgcag tatgagagcg ttctttattc
    14941 atcattacaa gtacttttga aatactgata ttttcaggaa ctaaaatcaa aggtttaaca
    15001 aaagtatcta aattttgact tttatggctt aattcatttt gtattatatc tcgtatgtgt
    15061 atcatcccta aaatagtatc tttagaaccg tcaatataag gaaagcgagt atgtttatgt
    15121 tcacaaatga tttgcatatt ttcttcgtaa cttttttgtt tatttagaca aatcatatct
    15181 tttctaggag tcataatctc tttagcaaca gtatctgaaa aatcaacagc attgcgtatg
    15241 atctctgttt caaattcatc taaaactcca cctttttgac tctcacttgc tatgatttta
    15301 atttcttctt cgctatgagt tagctcgctt tctttagcag gttttattcc aaaaagtttc
    15361 aaacttatag ctgctaaaaa atcgaaaatt ttaatacaag gcaaaaagag tatccaaaac
    15421 caatgaagag gtctagctat aaataaaacc gctttatctg caactgcaat agctatactt
    15481 tttggcacaa gttctcctaa aaccacatgt aaaagagtaa taatactaaa agcaataata
    15541 aaagctatag tatggataat aacagtgcta aaaccaagat taataagcgg aatttctagc
    15601 atttttgcaa tagcaggctc acctatccaa ccaagagcta gagaacttaa agtgattcct
    15661 aattgacaag cactaagata agtatcaagt cttgaagtaa cctccaaagc tttcttggca
    15721 ccagcttttt tttcttttac catctcttca agcttggaac gacgtacttt aacaatacta
    15781 aattcagaca aaacaaaaaa accatttaaa aacactagag caagtgcaac aacaaccata
    15841 agtatagaat atcctgcatc aaaagatgct gtagaagttt ggtttaaatc caaaacctga
    15901 ctggggtcca atgaagctcc ttaagaaata aaatattatt aaaccttatt atacacaatt
    15961 aaaagtaaat ttaatatttg aattttttct tgtattttat aagaaaaaac taagacttat
    16021 aagaaatatt tttctcaaat tcttttaaac gcttatatat acttctaagt tgagtgatag
    16081 ttgtccagtt tgtgataaaa acactaaaag agcttcgtac ttgatcaaaa gcattgttaa
    16141 tctgcattac aataccaagt cctatagctc cggcaaaaag ccctggtgcc atgattaaaa
    16201 atggcactat aactatcatt tgctcaaata aaatgagcca aatattaaaa tatccataat
    16261 gtaaaaaaag tcttttatag ttaaatttaa gccctgtaaa aagctctatc atagtctcat
    16321 ttttagcgta ttctttgcga ttatcctcag cataaacaag ctcttttcta aaagctgctt
    16381 cagctttttg attgttatat tcaagtccag gaagcttaat acctacaaac cacgacacaa
    16441 ccaagcctcc taaagaaatc aaaagtgcaa tataaacaag caaaccatca atgtttttta
    16501 aaaaataaaa agaagaattt tcgcttaaat ttgcaaataa agctttactc acaacatcac
    16561 ttaaactcca taaaatcggg ataaatgcta caagggtcat caaagctttt ataaaactaa
    16621 gtcctaaact ctctacgatt ttagaaaaat tataagtatc ttcttgaatt ctttgcgaac
    16681 ttccttctat attatcatct ttatttttcc aaaattttaa ataagaaaaa gtcatagcct
    16741 cacgccactt aaaagcatag acgctagcaa aatagatatt aatcgtagcg attaaaacat
    16801 aaggaatagc aatagccaaa aaaactaaaa tcaaagcata aaaatcattt gctga
//
LOCUS       DAEBKH010000019        16650 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.019, whole genome shotgun sequence.
ACCESSION   DAEBKH010000019 DAEBKH010000000
VERSION     DAEBKH010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16650)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16650)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16650
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.019"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..463
                     /locus_tag="KIL20_000444"
     CDS             <1..463
                     /locus_tag="KIL20_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HBD2720499.1"
                     /translation="LRSQKFIEYYGIDISPISCQMSKDMVENQFGAINQNNFKCDFIC
                     KDFTKCNFNNKADLVVMGEVLEHVEQPLQFMKDVKTLLNDGGEIFATIPINAPAIDHI
                     YLFSHPDEVKDLLKNAGLKIKECEYFMANNYSLEKALKTKNAIVMAVVLEK"
     gene            463..2025
                     /locus_tag="KIL20_000445"
     CDS             463..2025
                     /locus_tag="KIL20_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HBD2720500.1"
                     /translation="MNLFSPHLKRNGLIKFAKELDFSKSQDLLVNIHRNHAFEGVQSI
                     IAPFLHFANLRAEFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNVQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEEDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDNTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFEIRKDFILQWDDFDARMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKITGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVAQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKEFEKNSALIPFQ
                     NLNFKGLIIHEN"
     gene            2015..3076
                     /locus_tag="KIL20_000446"
     CDS             2015..3076
                     /locus_tag="KIL20_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HBD2720501.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTVAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPTLLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKNILIYTKEK"
     gene            3076..3297
                     /locus_tag="KIL20_000447"
     CDS             3076..3297
                     /locus_tag="KIL20_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HBD2720502.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFTLKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(3311..4540)
                     /locus_tag="KIL20_000448"
     CDS             complement(3311..4540)
                     /locus_tag="KIL20_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HBD2720503.1"
                     /translation="MLINQSFEIDSCDDVELNIKRTSKLEYRISYDDEKEIKAIVFII
                     GGYGANANIYFLDSYRNYIAKNFDVVAVHVFYHCFCQRRSDVEKYSTLADFTKDDLKL
                     IEKVLRKYNIPCDQLANNTVVSHCEYLSEIMTELKMLNRLPYDFEERLSATFIPSRRE
                     YQNFGIMAAIDHINALKDLVKRFPKLADLPKIYGGGSYGGYLALLIAKIAPWYVDGVI
                     DNSGSAVPPLNYIIGRELEFKSKDTNGDMYMQGDHFFVSCFLKTHWTRKENSPYFFNN
                     ENYFIRTLLNKDHLILQSQKNKNIIYVSYHSKEDPLTPANFKELTMQILKILGYDVSL
                     NLIDENKIDGKFIKNLDHGCGIPDKALFRKELPLMLEKLQGRKSFMQENSISYPCGNK
                     VFIFKDVGDKFELVIKD"
     gene            4601..6109
                     /locus_tag="KIL20_000449"
     CDS             4601..6109
                     /locus_tag="KIL20_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HBD2720504.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFVKERKEITYKDFDLFSKK
                     LASEILKTLGNDNPTQAPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFNIDESLIKHAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNALKKMLFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKTKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHVNIKNSACIFKEDI
                     ICFYESEEEINFKDFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
     gene            6149..6376
                     /locus_tag="KIL20_000450"
     CDS             6149..6376
                     /locus_tag="KIL20_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HBD2720505.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLETAMKD"
     gene            complement(6373..7443)
                     /locus_tag="KIL20_000451"
     CDS             complement(6373..7443)
                     /locus_tag="KIL20_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HBD2720506.1"
                     /translation="MTAYLHIGTTNTGNQEKQGFLMQNEEKLLQKAYIYPKSLRVANR
                     HWALVDMVLELVQKEDILKKESVLSHITNERLLRAIENFKSESALHKDKKFIFSAEGI
                     VWDFSTKKHVEILEKIMRELGFTQIYIIVYFRDTLGYLNSHCSQDHKNNMGYYSADFA
                     PQDHPRKYIFDYEWICKTHAEVFGEENLIVRLLREDYVGGTLLKDFVYHLGLEWDESF
                     VLKQTKNESFNLLGTELMSRLNQKDLKQDNLNSLLFMARRKFEGSKEKRLKFAVQKDI
                     AKAYVDYFASSLEWVKNKYFPHKNSLFTPVNWEEYEQNYTLTHMLSKDWDDVADFIAQ
                     IIVSKNEIISSLKEQLELARKD"
     gene            complement(7465..8679)
                     /locus_tag="KIL20_000452"
     CDS             complement(7465..8679)
                     /locus_tag="KIL20_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HBD2720507.1"
                     /translation="MLINQTFEIDSCDDVELGIKRTSKLEYRISYDDEKDIKAIVFIV
                     GGFGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARQSIDQKYNPKLIPNQDDLER
                     VNGILKNINLGHLSVNKDNFEQIIPLIEQKVNKMKQAGLVDESQKIELSCDFIPPNGD
                     YQNYGIMAAIDHINALKDLVKRFPKFADLPKIYGGGSYGGYLSLLIAKIAPWYVDGVI
                     DNSGVCLPFLACILGREMNQGEFYFEGSGYRLYCFVYKYWNRNMNSSYYFGDENYLIR
                     AVLNSNHLQIQSNLNKNTIFVSYHSIQDMGAPVQNKIELYKCYQELGYDATLHLIKDE
                     NDIDGRFVKSLEHGLRMTDRALFRKELPLMLEKLQGRKSFMQENSISYPCGNKVFVFK
                     DLEDKFELEMIN"
     gene            8758..9456
                     /gene="pseF"
                     /locus_tag="KIL20_000453"
     CDS             8758..9456
                     /gene="pseF"
                     /locus_tag="KIL20_000453"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HBD2720508.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLISYSIENALNSGIFD
                     EVVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            9440..10264
                     /gene="pseG"
                     /locus_tag="KIL20_000454"
     CDS             9440..10264
                     /gene="pseG"
                     /locus_tag="KIL20_000454"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HBD2720509.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            10261..10734
                     /gene="pseH"
                     /locus_tag="KIL20_000455"
     CDS             10261..10734
                     /gene="pseH"
                     /locus_tag="KIL20_000455"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HBD2720510.1"
                     /translation="MIKLKNFTELNSQEIELIFKWRNHPDINQFMKTKYIDFKEHLRF
                     LKKLHQDSSKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAKPNLKGVGQILMNEIIK
                     YAFENLKVNTLKAYVFKDNRKALKLYQQNHFTIYDEDKDFYHICLKQSDCKALPS"
     gene            complement(10699..11445)
                     /gene="hisF"
                     /locus_tag="KIL20_000456"
     CDS             complement(10699..11445)
                     /gene="hisF"
                     /locus_tag="KIL20_000456"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HBD2720511.1"
                     /translation="MLKTRIIPCVLLKNGQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAANRFGSQCIVCSIDVKRKGGQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGRAKGYDLELLKIFQNKLKIPLIINGGLSNPSDGVEALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(11446..12051)
                     /gene="hisH"
                     /locus_tag="KIL20_000457"
     CDS             complement(11446..12051)
                     /gene="hisH"
                     /locus_tag="KIL20_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HBD2720512.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLP
                     GVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQVPLYQGIDNKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDHIFATQFHPEKSQNLGLKLLENFARL"
     gene            complement(12048..13184)
                     /gene="pseA"
                     /locus_tag="KIL20_000458"
     CDS             complement(12048..13184)
                     /gene="pseA"
                     /locus_tag="KIL20_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HBD2720513.1"
                     /translation="MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEVKNQNINWQEREK
                     EFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILGREWLEEFGGLLGNRPSDMLGVNGITEKDLFLYTY
                     PSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSG
                     FSEKEFQKIVDSFTNKKIFKRDENGKFLRDYDGSLVRKDECVLK"
     gene            13442..14473
                     /gene="pseI"
                     /locus_tag="KIL20_000459"
     CDS             13442..14473
                     /gene="pseI"
                     /locus_tag="KIL20_000459"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HBD2720514.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALQSIKAAKKAGADAI
                     KIQTYTPDSLTLNSDKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDLEFLKRFDPIAYKIASFEANDENFIRLIAKEKKPTIVSTGIATEEELF
                     RICEIFKEEKNSNLIFLKCTSAYPAAIEDMNLKGIVSLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKSIESEDSKFSLDFDEFKAMIDAVRQAESALGDGKLDLDE
                     KALKNRVFARSLYASKEIKKGEIFSEENVKSVRPSFGLHPKFYQEILGKKATKDIKFG
                     DALKQGDFE"
     gene            14470..15441
                     /gene="legB"
                     /locus_tag="KIL20_000460"
     CDS             14470..15441
                     /gene="legB"
                     /locus_tag="KIL20_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HBD2720515.1"
                     /translation="MKNILVTGADGFIGSHLCESLVKKGFKVRALSQYNSFNFWGHLE
                     KSPFLKDMEVISGDLRDSFFCEKITKNIDAIFHLGALIAIPYSYTAPQSYVDTNVNGT
                     LNMLEAAKKNEISHFIHTSTSEVYGTAFYVPIDEKHPLQPQSPYSASKIAADMMALSY
                     YNSFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGAKEIKLGDLSPKRDLNFVLDT
                     CEGFISLLNLKHFGEVYNIGSGVEYSMQEVLDLIQKILDSKVKIIQDEQRLRPKNSEV
                     FRLCCDASKLKKATNWQSKISLEEGLRQSIEYFKENLENYKSELYNV"
     gene            15434..16597
                     /gene="legC"
                     /locus_tag="KIL20_000461"
     CDS             15434..16597
                     /gene="legC"
                     /locus_tag="KIL20_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HBD2720516.1"
                     /translation="MFEKEISFIKSLFNKENIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVTRFEEALKEKTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AITYTGAKPVFLDIDENTLSLSPKALEHFLENQTYQKDNLSYNKTTHKPIKACVIMHT
                     FGLSAHIKAIKELCEKYHILLIEDAAEALGSTYENKALGTFGKCGILSFNGNKIITGG
                     CGGAILSDDENLAKLARHLSTTAKISHPYEYDHDRVAYNYRLCNINAAILLAGLENLE
                     LFLENKRELAKIYKDFFKNHDKCKFVDEKSNEKSNFWLNTLLFKDENLRNIFLEECLK
                     NNIFVRPVWKSLPSLKAFQNCQSDELINTKNLEKHLVNLPSSVRITNKNLGLS"
BASE COUNT         6023 a         2679 c         2390 g         5558 t
ORIGIN      
        1 actaagaagt caaaaattta tagaatatta tggaatagat atttctccta taagttgtca
       61 aatgagcaaa gatatggtag aaaatcaatt tggagcaatt aatcaaaata attttaaatg
      121 tgattttata tgtaaagatt tcactaaatg caatttcaac aataaagcag atttagttgt
      181 aatgggagaa gtcttggagc acgtagaaca acctttacag tttatgaaag atgtaaaaac
      241 tttactgaat gatggtggag aaatttttgc aaccatccct atcaacgctc ctgctattga
      301 ccatatttat ttattttccc atcctgatga agttaaagat ttgcttaaaa atgcaggttt
      361 aaaaatcaaa gaatgcgaat attttatggc aaataattat tctttagaaa aagcattaaa
      421 aacaaaaaat gccattgtta tggcagtggt tttggaaaaa taatgaatct tttttcacct
      481 catttaaaac gcaatgggct tataaaattt gccaaagagt tagactttag taaaagtcaa
      541 gatcttcttg ttaatatcca tagaaatcat gcttttgaag gagtgcaaag tatcattgct
      601 ccttttttac attttgctaa tttaagagct gagtttaatt tcagctctta tgatgatagc
      661 ttgagttttg ataactttaa agaagctagt ttagaacttt tatggctaga tttaacccgc
      721 tataaaaata atgtgcaaaa ttttatagaa gaaagacttt tagaactaag aaaaatttca
      781 caaaacccta ttttagttct tagtttagga gaatttaaaa cagataaaaa aattttaaat
      841 tgtgaaattt ttaacataga aaaactcata aaagagtatt ttgatgaaga agatatttta
      901 gacctagcta aagaagaact tacaggctct aagcttaata ataaagcctt gattttttta
      961 gcacaaattt taggacttag cctcatccct gcactcgtaa aacccgctct taaagctctt
     1021 gtacttgatc ttgataatac cttgtatcaa ggaattttag gtgaagaggg tatagataat
     1081 cttaatttaa gtcctttgca caaaacctta caagaaaaaa ttaaaacttt taaaaaacaa
     1141 gggtttttac ttgccctagc ttcaaaaaat gaagaaaaag acgcaaaaaa actttttgaa
     1201 ataaggaaag atttcatctt acaatgggat gattttgatg ctagaatgat caattgggag
     1261 ccaaaaggtg aaaatatctt aaaaattgct aaaaaattta atataaatac taacgctatg
     1321 ctttttatag atgataatat cgccgagctt gaaaatacca aaattacagg cgttaaaaca
     1381 cttttatgcg atgaaaatat actttataaa atcaaacttt ttcctaatct tttaaaactt
     1441 tcaaatacca aagaagatca aattcgtgcc aaagatatag cagccaatgc tttaagagaa
     1501 gagcttaaaa gcttaagcga tgaagaatat tttcaaaatc ttgaaatcag cttaaatttt
     1561 agcaaaaatg atctgcaaaa tatccctcgc attagcgaac ttttaggcaa aaccaatcaa
     1621 tttatcgcta attacacacg cttaaatcaa gaaaaagtcg cacaacacat gcaaaaagaa
     1681 ctcattgtaa gtgtgagtat gagtgataaa ttaagcgata gtgggattat cgctattttt
     1741 gttttttctt gtaaagaagg aaatttattt atcgatgatc tttgcatttc ttgtagggct
     1801 ttaggtagaa aacttgaaac tagaatgttt tttaaagcct ttgaactagc tttacatttc
     1861 tttgatctta aaaacaataa tgcaaggctt tattatcaaa aaggcgaaag aaatatgcca
     1921 tttttgagct ttttagaaca aatttccaaa gaatttgaaa aaaactcagc ccttattcca
     1981 tttcaaaatt taaacttcaa aggacttata atccatgaaa actagatttg ataaagctaa
     2041 aatttcaggc atttgcgtaa gcgtacctga acataaaatt tgcattgatg atgagttaga
     2101 aagcgttttt tcaaacgata tcaaaaccct taaaagaatg aaaaaagtca taggtttaaa
     2161 cacgcgttat atttgcgatg aaaacacttg cgtaagcgat cttggaaaac acgcagccaa
     2221 tacactttta caaggtttaa atatagataa aaatagcctt gatgcactca tcgtagtaac
     2281 tcaaagtcct gattttttca tgccttctac ggcttgttat ttacaccaac ttttaaattt
     2341 aagctccaaa actgtagctt ttgatttagg gcaagcttgt gcagggtatt tatacggctt
     2401 atttgtcgct cattctttaa tacaaagtgg cttaggtaaa attttactca tttgtggaga
     2461 tactttaagc aaattcatcc accctaaaaa tatgaattta gctcctattt ttggtgatgg
     2521 agtaagtgca actttaattg aaaaaacgga ttttaacgaa gctttttttg agcttggaag
     2581 cgatggaaaa tattttgata aactcatcat tccaaaaggt gcgatgagaa tacctaaagc
     2641 agatattttt aacgatgatt cgctcatgca aactgaggag tttagacaat tagaaaacct
     2701 ttacatggac ggagcaaata ttttcaatat ggctttggaa tgcgaaccta aaagctttaa
     2761 agaaatttta gaattttcta aagtagatga aaaagacatt gcttttcatc tttttcatca
     2821 atccaatgcg tatttggttg attgcatcaa agaagaatta aaacttaatg atgataaagt
     2881 tcctaatttt atcatggaaa aatacgctaa tttaagcgct tgttcactac ctaccctact
     2941 ttgcgaacta gatactccaa aagaatttaa agcgagttta agtgcttttg gtgcagggct
     3001 tagctgggga agtgcggtgt tgaatttcaa agatttatac acaaaaaata ttttaattta
     3061 cacaaaggag aaataatgac aaaaactgaa tttttagaag agcttaaaga agctatgcat
     3121 agagatgaag acttaaatga agatatgcta cttgatgata tagatgagtg ggatagtttg
     3181 gcttttgtat ctgtgatggt gctttataaa aatcttttta ctttaaaaat cacagccgaa
     3241 gacttgaaaa attgtcaaaa agtaagtgat ttaatcaatt tagcaaagct tgattaaaac
     3301 ctttaaggtt ttaatctttt atcactaatt caaatttgtc acccacatct ttaaatataa
     3361 acactttatt tccacaagga taagagatgg aattttcttg catgaaagat tttcttcctt
     3421 gtagtttttc aagcattaaa ggaagttctt ttctaaataa ggctttatca ggtataccac
     3481 aaccatgatc taaattttta ataaattttc catcaatttt attttcatct atcaaattta
     3541 agcttacatc gtaacctaaa atttttaata tttgcatggt tagttcttta aaatttgctg
     3601 gagttaaagg atcttcttta ctatgataac tcacataaat aatattttta tttttttgac
     3661 tttgcaaaat caaatgatcc ttatttaaca atgttctaat aaaataattt tcattattaa
     3721 aaaaataagg tgaattttct ttacgcgtcc agtgggtttt tagaaaacaa ctcacaaaaa
     3781 aatgatcgcc ctgcatatac atatccccat tagtatcttt gcttttaaat tccaactctc
     3841 taccaataat ataattaagc ggtggaacag ccgaacccga attatcaatc acgccatcca
     3901 cataccaagg agctattttt gctatgagca aggctaagta tcctccataa gacccccccc
     3961 cataaatttt tggtaaatct gcaagttttg gaaagcgttt aactagatct tttaaagcat
     4021 tgatatgatc aatagctgcc ataatgccaa aattttgata ttctctacgc gaaggaataa
     4081 aagttgcact tagtctttct tcaaaatcat aaggcaatcg atttaacatt tttaattctg
     4141 tcataatctc gctcaaatat tcacaatgac taactacagt attattggct aattgatcac
     4201 atggaatatt gtatttacga agcacttttt ctattaattt taaatcatct tttgtaaaat
     4261 ctgctaatgt tgaatacttt tcaacatccg aacgcctttg acaaaaacaa tgataaaaaa
     4321 catgcactgc tacaacatca aaatttttag caatataatt tctataagag tctaaaaaat
     4381 atatatttgc attggctcca taacctccta ttataaaaac tatagcttta atctcttttt
     4441 catcatcata acttatacgg tattcaagtt tgctagttct ttttatattt aattctacat
     4501 catcacaaga atcgatttca aagctttggt ttatgagcat ataaaggcct tttttattaa
     4561 tttatcgata ttatattaca aaaaattaaa aaggtaaatc atgacaactc atatctatga
     4621 ttttttagaa aaaagtttaa tcaaatttag cgaaaaaact gcttttgtag aaccctttgt
     4681 caaagaaaga aaggaaatca cttacaaaga ctttgatctc ttttctaaaa aactagccag
     4741 tgaaatttta aaaactttag gaaatgataa tcctactcaa gctcctgttt taatcatctt
     4801 gcctaaaggg attgattgtt tgatttcatt ttttggagtg gcactcagtg gaaattttta
     4861 tacactttta gatgaaaaaa gtcctaaaga aagagtagaa aaagtcatag aagttttaaa
     4921 gcctaaactt tttatcactt caaaggactt aaattttaac ttagatttac ctacgcttta
     4981 tacacaagac tttgaaagtt ttaatataga tgagagttta ataaagcatg ccaaagaaaa
     5041 acatatagat actaatttac tctatgtttt ctttacaagt gggagcacag gcattcctaa
     5101 aggagtaagc atagctcata agagtgtgat tgattatact ttttgggtgt gtgagacttt
     5161 taaatttgat gagaatgaaa ttttagccaa tcaagcgcca ttttattttg acaatagcat
     5221 tttagatatt ttttcaagtg taaaatcagg agcgacttta caccttttac ctaatcatct
     5281 ttttgccttt ccaaataaaa ttttagaatg ccttgaaaaa gaaaaagtaa gcactatatt
     5341 ttgggtacct tcggtgctga tttattttgc aaatactgaa gctttgaata attttagttt
     5401 aaacgcctta aaaaagatgc ttttttgtgg tgaaatcatg cccaataaac agctcaatat
     5461 ttggcgtaaa cacttaccca atgccttatt tgccaacctt tatggcccaa cagaaatcac
     5521 tgatgtatgt tctttttata tcatcaatcg cacttttaaa gatgaagaac ttttaccgat
     5581 aggaaaagcg tgcaaaaaca cagaactttt agtttttgat gaaaatatga atttcataag
     5641 tcctaaacaa ataggtgtta aaggggagct tttcgtgcgt ggaacttctt tgtctttagg
     5701 gtattataat gacaaagaaa aaaccaaaca agcttttatt caaaatcctt tacatgataa
     5761 ttatttagat ttactctata aaacaggaga tatcgtttct tataatgaat ttggagagct
     5821 tttatgctac ggaagagcag ataatcagat aaaatatatg ggacatagaa tagaacttgg
     5881 agaaatagaa agcgtgataa attctcatgt gaatattaaa aacagtgctt gtatttttaa
     5941 agaagatatt atttgttttt atgaaagtga agaagaaatt aattttaaag attttttgaa
     6001 agataaatta ccttcttata tgatcccaaa aaattttatt aaactcgaca aatttaagct
     6061 taatcaaaat ggtaaaattg atagaaaggt tttaaaagaa cttgtttaaa taaatatttt
     6121 ataatttcaa aaaactaaag gagaaaaaat gcaagaaatc aaacaatttt ttatcaatat
     6181 agaaagaaca gatatcaatg agagtatgga aaatctagta agtgaagatt ttatcgatag
     6241 tatcgatatc atggctttgg ttgccgaaat agaaaaattt tataaaaaac ccttaaaagc
     6301 agaatttatc acacctgaaa attttgaaag ctttgaaaat atcaaaaaaa tgcttgaaac
     6361 tgcaatgaaa gactaatctt tccttgcaag ttcaagctgt tcttttaaag aactgatgat
     6421 ttcattttta gaaacaataa tttgtgctat aaaatccgcc acatcatccc aatctttact
     6481 tagcatatgg gttaaagtat aattttgttc atattcttcc caattcacag gagtaaaaag
     6541 agaattttta tgcgggaaat atttgttttt tacccattca agtgaagaag caaaataatc
     6601 cacataagct ttagcaatat ctttttgcac tgcaaatttt aatctttttt ctttgctgcc
     6661 ttcaaatttt cttcttgcca taaaaagcaa agaattaaga ttatcctgct ttaaatcttt
     6721 ttgatttaat cttgacataa gctccgttcc taaaagatta aaactttcat ttttggtttg
     6781 ttttaaaaca aaactctcat cccattcaag tcctaaatga taaacaaaat ccttaagtaa
     6841 agtccctcct acataatcct cccttagaag tcttactatc aaattttctt ctccaaatac
     6901 ctcagcatga gttttgcaaa tccattcata gtcaaaaata tattttctag gatgatcttg
     6961 cggagcaaaa tcagcagaat aataccccat attgttttta tggtcttgag aacaatgtga
     7021 gtttaaataa cccaaagtat ctctaaaata cacaataata taaatttgag taaaacctaa
     7081 ctctctcata atcttttcta aaatttctac atgttttttg gtagaaaaat cccaaactat
     7141 accctcagct gaaaaaataa attttttatc tttatgtaaa gcactttcac ttttaaaatt
     7201 ttctatagct ctaagaagtc tttcatttgt gatatgactt aaaacactct ctttttttaa
     7261 aatatcttct ttttgaacca attctaaaac catatccacc aaagcccaat gcctatttgc
     7321 cactctaaga ctttttgggt aaatataagc tttttgcaaa agcttttctt cgttttgcat
     7381 caagaagcct tgtttttctt gatttcctgt attagtagtt cctatatgta aatatgctgt
     7441 cattttatat cctttatctt tattttaatt tatcatctct aactcaaatt tatcttctaa
     7501 atccttaaac acaaatactt tattcccaca aggataagag atagaatttt cttgcataaa
     7561 agattttctt ccttgtagtt tttcaagcat taaaggaagt tcttttctaa ataaagccct
     7621 atcagtcatt ctaagtccat gctctaaact ttttacaaat ctaccatcta tatcattttc
     7681 atcctttatt aaatgtaaag ttgcatcata tcctaattcc tgataacact tataaagttc
     7741 tattttattt tgcactggcg cacccatatc ttgtatacta tgatagctta caaaaatggt
     7801 atttttattt aaatttgatt gaatttgaag atggtttgaa tttaaaactg ctctgattaa
     7861 ataattttca tcaccaaaat aataagaaga attcatattt ctattccagt atttatatac
     7921 aaaacaataa agtctataac cacttccttc gaaataaaat tccccttgat tcatttctct
     7981 tcctaaaatg cacgccaaaa atggcaagca aacacctgaa ttatcaatca caccatccac
     8041 ataccaagga gctatttttg ctatgagtaa agataggtat cctccataag accccccccc
     8101 ataaattttt ggtaaatctg caaattttgg aaagcgttta actaaatctt ttaaagcatt
     8161 gatatgatca atagctgcca taatgccata gttttgataa tctccattgg gtgggataaa
     8221 atcacaagaa agttctattt tttggctttc atcaaccaaa cctgcttgtt tcattttatt
     8281 aactttttgc tctataagag gaataatttg ttcaaaatta tctttattaa ccgataaatg
     8341 tcctaaatta atatttttta aaatgccatt tacacgctct aaatcatctt gattgggaat
     8401 aagctttgga ttatactttt gatcaatact ttgtcttgca caaaaacaat gataaaaaac
     8461 atgtaccact acaacatcaa aatttttagc aatatattcc ctatcaaaat ctaaaaaaga
     8521 aatatttgca ttagctccaa aaccacccac tataaaaact atggctttga tatctttttc
     8581 atcatcataa cttatgcgat attcaagctt actggttctt ttaataccta gttctacatc
     8641 atcacaagaa tcaatttcaa aggtttggtt tataagcaat tttaagcctt ttattgtatt
     8701 ttaaagacaa ttatacttaa attttagtaa aataaaacac aaaaacaagg cttaactatg
     8761 aaaaatcttt gcataatccc tgctcgtggt ggatcaaaaa gaattcctag aaaaaatatc
     8821 attgattttc taggtaaacc tttaatctct tatagcatag aaaatgcttt aaattcaggt
     8881 atttttgatg aagtggtgct ttcaagcgat gatgaagaaa tcatagaagt agccttaaaa
     8941 tacggtgcaa aagctccttt tgtgcgtgat aaaaatttaa gcgatgatta tgcttcaagc
     9001 actgctgtag tgcaaaatgc catagaaatt ttacaaagcc aaaatcaaat ttatgatcat
     9061 gtctgctgcc tttatgctac tgctcctttg ttaaataaag acattttaaa acaagcctat
     9121 gaaaaattta tacaaaatca aagcaagttt ttatttgctg ctactgagtt tgagtatcct
     9181 atacaaaggg cattttatct aaatgaaaac aatcaagttt atatgtttga tgaaaaacat
     9241 tataaaagtc gttcacaaga tctaacaaaa gcttatcatg atgcaggagc tttttatttt
     9301 ggtacaagca aagcttggct tgaggaagat tttatattta aacctcattc tagcgtgttt
     9361 gtattgccaa gaaatttagt ttgcgatata gacaccatac aagatttgga atttgcaaaa
     9421 atactttata aggtaaatca tgaaagtgct ttttagaagc gatagctcca gtcaaatagg
     9481 ctttggacac attaaacgcg atctagtctt agctaaacaa tatagcgatg taagttttgc
     9541 ttgcttgcct ttagaaggct ccttgatcga tgaaattcct tatcctgttt atgagcttag
     9601 tagcgaaagt atctacgagc ttatcaatct catcaaagaa gaaaaatttg aacttcttat
     9661 cattgatcac tatggcatca gcgtagatga tgaaaaactg attaagcttg aaacaggggt
     9721 gaaaattcta agctttgatg atgaaataaa gcctcatcat tgtgatattt tactcaatgt
     9781 caatgcctat gcaaaagcaa gtgattatga aggtttagtg ccttttaaat gcgaagtaag
     9841 atgtggtttt tcttatgctt taatcaggga agaattttat caagaggcca aagaaaatag
     9901 agaaaaaaaa tatgattttt tcatttgcat gggtggaact gatataaaaa acctttcttt
     9961 acaaattgct agcgaattac ctaaaacaaa aatcatcagc attgcaacca gctcttctaa
    10021 tcctaatctt aaaaaattgc aaaaatttgc aaaattacat aacaatatta gattatttat
    10081 cgatcatgaa aatattgcaa aattgatgaa tgaaagcaat aaactcatca tcagcgcaag
    10141 ttctttagtc aatgaagcct tgcttttaaa ggcaaatttc aaagctattt gttatgttaa
    10201 aaatcaagaa tctacagcaa cttggcttgc taaaaaaggg tatgaagtgg agtataagta
    10261 ttgataaaac ttaaaaattt cacagaactt aattctcaag aaatagagct gatttttaaa
    10321 tggcgcaatc accccgatat caatcaattt atgaaaacaa aatatattga ttttaaagaa
    10381 catttaagat ttttaaaaaa attacatcaa gattctagca aaaaatattt tttagttttt
    10441 caagatgagc agattatcgg cgtaattgat tttgtcaata tcacaactaa atcttgcgaa
    10501 tttggacttt acgcaaaacc taatttaaaa ggcgtaggac aaattttaat gaatgaaatt
    10561 ataaaatacg cttttgaaaa cttaaaagta aatactctta aagcttatgt tttcaaagac
    10621 aatcgcaaag ctttaaaatt atatcaacaa aatcatttta ctatttatga tgaagataaa
    10681 gatttttacc atatttgcct aaagcaatct gactgcaaag ccttgcctag ctaattcttc
    10741 ttttacatct ttaggggtat acttagaaaa atgaaaaata taagcacccg ctaaagcatc
    10801 agcacctaaa tttaaagcct caactccatc acttggattg ctaagtcctc cattgataat
    10861 aagaggaatt ttaagtttat tttgaaagat ctttaaaagt tctaaatcat aaccctttgc
    10921 ccttccttca aaatccacag aagttaaaag aagctctcca gctccttttt tttcatattc
    10981 taaagcaagt tctaaaggac ttttttcaag taaatttccc ctgtcataaa cacaaaattg
    11041 ccctcctttt cttttaacat ctatagaaca aactatacat tgagaaccaa aacgattagc
    11101 cgctttactt ataaaatcca tatcttctaa ggccttagaa ttgatagaaa ttttatccgc
    11161 acctaaattt aaaatctttt gtatatcttc aagggttttt atcccgccac ctatagttaa
    11221 aggcataaaa cattctttag caagatcttc tatactttca aaatctattt ctccactttt
    11281 tgaagcatct atatctaaga taataagctc atcaacattg cgtgcattat aaattctcat
    11341 tgttgaagtt aaatgcccta tagtgcgaaa atctttaaat tctatacttt taacaagttg
    11401 tccgtttttt aacaaaacac aagggataat tctagttttt aacatttaaa gccttgcaaa
    11461 attttctaaa agttttaaac ctaaattttg acttttttca gggtgaaatt gtgtagcaaa
    11521 aatatgatct ttttgtaaag atgcaacaaa tttatgtccg tattgtgctt tagcacttac
    11581 aaactcatct ttgcatttca cataaaaaga atgcacaaaa taaaaatcac tcttattatc
    11641 tatgccttga tacaaaggaa cttgttttaa aatttcaagc tcattccaac ccatatgtgg
    11701 gatttttaaa tttaaatcct cttcaaattt aactacttca ccttctataa aaccaagtcc
    11761 ttcgcaaact ccaccttcat agcccctttc taaaaaaagt tgcattccta aacaaatgcc
    11821 taaaataggt tttttttgta ctaaaacttg ctcttttaaa gcttctataa aaccaagttc
    11881 ttttaaattt ttcatcgctt ctttaaaaga tcccactcca ggtaaaagca atttatctgc
    11941 tttttgcaaa tcttttggat ttttagctat gaaatttata gctcctattt tttcaaaagc
    12001 cttagcaaca gagtttaaat ttcccgcctt gtaatcaatg agcgctatca ttttaaaaca
    12061 cactcgtctt ttcttaccaa agaaccatca taatctctta aaaatttgcc attttcatca
    12121 cgtttaaaaa tttttttatt ggtaaaagaa tctactattt tttgaaattc tttctcgcta
    12181 aaaccactga attcaaggta ttttttaata gcctttttag ggggcttgcc atcgtatttt
    12241 tgtaccaaac gcaccccttc ttcacggctg atataaccta aacgaatatc caaacaagca
    12301 ttatccgttg ctctaccaaa gccgtatttg cagtatttta aataatcatg cacatgatta
    12361 gaataacaat ctaaattttc aaaattttca taagtagtct caacaggatg atctagagtt
    12421 aaaaaaccat attttttaga aatttcaaga atttttttat aatcccattt aaaataatac
    12481 cctaaaaata gcccagtaac ccctactctt tgaagttctt catcacttgg ataagtatat
    12541 aaaaacaaat ctttttcagt gatgccattt accccaagca tatcagaagg acggtttcct
    12601 aaaagtccgc caaattcttc aagccactct ctgcctaaaa tattcttatt tttactactc
    12661 gcaggaccgc catactctat ctgcggactt tctccccaga tgatcaaagg tactccaaaa
    12721 tttaccgcta tgcgtggaac agaagtaaaa attcccaaat ggttttgcca ctcattatcc
    12781 cctgttctta taaaagcttc acgggcaagt ttttgataaa cttttggatc acgcttgata
    12841 tggatcaaat ccacgccaag atgatttaaa ttgtctaaat ttttgcgccc tattttcgta
    12901 ggtacgctag gctcaaaaca cacacacaaa ggattaagtc caagttcaag cattttaacc
    12961 acttgaaaag tagaatcttt tccgccactt actccgataa cacaatcata aacaggatgt
    13021 tttttgtatt tttttataag ctcaaaaaat tctttttctc tttcttgcca attaatattt
    13081 tgatttttaa cttcttgaga acggcaagca tcacaaacac cttcttcatc aaaatgtaaa
    13141 tcaggcttag tatctggcat cacacatttt ttacaaaatt tcataaattt cctttaatta
    13201 gtcttaaata tatatatcgt tataattaaa ttttatttta tgattttata tatttatatt
    13261 atataaaaat taaaaaatga atgaattcta taatttaaat ccatatggca ttttttgaat
    13321 gaaaccaagc aaaatcataa caaagttgta atatttatat aatataaata tataaattga
    13381 agaaatatat aatataatta tatatcattt tagtcaggaa atttaccaaa gaaagaaaag
    13441 tatgcaaata ggaaatttta acacagataa aaaagttttt atcatagcag aacttagcgc
    13501 caatcacgca ggaagtcttg aaatggcact tcaaagcata aaagctgcta aaaaggcagg
    13561 tgctgatgcg ataaaaatcc aaacttacac tccagatagt ctcacgctaa atagcgacaa
    13621 agaagatttc atcatcaaag gaggactttg ggacaaaaga aaactttatg agctttatga
    13681 aagtgcaaaa accccttatg aatggcattc tcaaatcttt gaaaccgcac aaaatgaagg
    13741 catactttgt ttttcaagtc cttttgccaa agaagattta gaatttctaa aacgctttga
    13801 tcctatagcc tataaaatcg cttcctttga agctaatgat gaaaatttca tacgtttaat
    13861 cgccaaagaa aaaaaaccca ctatcgtttc aacgggcatt gctacagaag aagagctttt
    13921 tagaatctgt gaaattttta aagaagaaaa aaattctaat ctcatctttt taaaatgcac
    13981 ttcagcttat cctgctgcca tagaggatat gaatttaaaa ggcatagtaa gtttaaaaga
    14041 aaaatttaat gttgaagtgg gactaagcga tcacagcttt ggttttttag cccctgttat
    14101 ggcagtagca cttggagcta gagtgataga aaagcacttt atgttagata aaagtataga
    14161 aagtgaagac agtaaattta gccttgattt tgatgaattt aaagctatga tagatgcagt
    14221 tagacaggct gaaagtgctt taggtgatgg taagttagat ctagatgaaa aggcacttaa
    14281 aaaccgtgtt tttgcaagaa gtttatacgc aagcaaagaa attaaaaaag gtgaaatttt
    14341 cagcgaagaa aatgtaaaat ccgtgcgtcc ttcttttgga ctacatccta aattttatca
    14401 agaaattcta ggaaaaaaag ctactaaaga tataaaattt ggcgatgctt taaaacaagg
    14461 agattttgaa tgaaaaatat cttagttaca ggtgctgatg gttttatagg ttctcatctt
    14521 tgcgaaagtt tagtcaaaaa aggttttaaa gtcagagctt taagtcagta taattctttt
    14581 aatttttggg gacatttaga aaaaagtcct tttttaaaag acatggaagt tataagtgga
    14641 gatttaagag acagtttttt ttgcgaaaaa atcaccaaaa acatagatgc gatctttcat
    14701 cttggtgcct taatcgccat cccctactcc tacacagccc cacaaagtta tgtggatacc
    14761 aatgtcaatg gcactttaaa tatgctcgaa gcagctaaaa aaaacgaaat ttcgcatttt
    14821 atccacacct caacaagcga agtttatggc acggcctttt atgtgcctat cgatgaaaaa
    14881 caccctttgc aacctcaaag cccttattct gcaagcaaaa tcgctgcaga tatgatggcg
    14941 ctgagttatt ataattcttt taatttaaat gtcaatatcg cacgcccttt taacacctat
    15001 gggccaagac aaagcgcaag agccatcata cctaccatca tcacgcaaat tttaagcgga
    15061 gcaaaggaaa tcaaactagg agatttaagc cctaaaaggg atttaaattt tgtgctagat
    15121 acttgcgagg gttttatctc tcttttaaat ttaaaacatt ttggagaagt ttataatata
    15181 ggctcaggag tggaatactc catgcaagaa gtacttgatc tcatacaaaa aattttagat
    15241 tctaaggtaa aaatcatcca agatgaacaa agattgcgtc ctaaaaatag cgaagttttt
    15301 agactttgtt gcgatgcaag caagcttaaa aaagctacaa attggcaaag caaaataagc
    15361 ttagaagaag gtttaagaca aagcatagag tattttaaag aaaatttaga aaattataaa
    15421 agtgagcttt ataatgtttg aaaaagaaat ttcttttata aaaagtcttt ttaataaaga
    15481 aaatatcgcc ctacatgagc cttgttttat aggcaatgag aaaaaatatc tcttggaatg
    15541 tattgatagc ggctttgtct caagcgtagg agaatttgta acgcgttttg aagaagcttt
    15601 aaaagaaaaa accaaagcac gctttgtcat cgctacaaat acaggtacag cagcccttca
    15661 tatcgcttta ctagctaatg gcatcgatga aaactgcgaa gtcatcactc aaagcataag
    15721 ctttgtcgcc acggccaatg ctatcactta tacaggtgca aagcccgttt ttttagatat
    15781 agatgaaaac actctgagtt taagtcctaa ggctttagag cattttttag aaaatcaaac
    15841 ttatcaaaaa gataatctta gctataacaa aactacacac aaacccatca aagcttgtgt
    15901 tatcatgcat acctttggtt taagtgctca tataaaagcc atcaaagagc tttgtgaaaa
    15961 atatcacatc cttttaattg aagatgctgc agaagcctta ggaagcactt atgaaaataa
    16021 ggccttaggt acttttggaa agtgtggaat tttaagtttt aatggcaata aaattatcac
    16081 aggcggatgc ggtggagcga tattaagcga tgatgaaaat ttagccaagc ttgcaagaca
    16141 ccttagtact acagccaaaa tctctcatcc ttacgaatac gatcatgata gggtagctta
    16201 taattaccgt ctttgcaata taaacgcagc gatcttgctt gcaggacttg aaaatttgga
    16261 acttttttta gaaaataaaa gagaacttgc taaaatttac aaggattttt ttaaaaatca
    16321 cgataaatgc aaatttgttg acgaaaaaag caatgaaaaa agcaattttt ggctcaatac
    16381 cttgcttttt aaggatgaga atttaagaaa tatcttttta gaagaatgct tgaaaaataa
    16441 tattttcgtc cgtcctgtat ggaaaagctt accgagttta aaagcttttc aaaactgtca
    16501 aagcgatgag cttataaaca ctaaaaattt agaaaaacac ttggttaatt tacctagtag
    16561 cgttagaata acaaataaaa acttaggact atcatgaaaa aatatatatc caatatagaa
    16621 atttcaacaa atcaaggtac aaatgcccaa
//
LOCUS       DAEBKH010000020        16243 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.020, whole genome shotgun sequence.
ACCESSION   DAEBKH010000020 DAEBKH010000000
VERSION     DAEBKH010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16243
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.020"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..339)
                     /locus_tag="KIL20_000462"
     CDS             complement(<1..339)
                     /locus_tag="KIL20_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HBD2720517.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYGFDK
                     GVLVQPSFLGVDNEFLLQSIEKDENIKAIVVVDEGIKFDELKKLKERKACGVRLNLIG
                     KELPNFKTMVW"
     gene            complement(350..1642)
                     /locus_tag="KIL20_000463"
     CDS             complement(350..1642)
                     /locus_tag="KIL20_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HBD2720518.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVIFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFMTSQSGIIF
                     RGLMENSGIEANEAFVNSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVISKPDSFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVEAGVIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            complement(1761..2765)
                     /locus_tag="KIL20_000464"
     CDS             complement(1761..2765)
                     /locus_tag="KIL20_000464"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HBD2720519.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLALEINLLAKENDKAKIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLPKNDFVKFFKVYLPNLEAKEPVTLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNAIEHFDKAIAHIEDDYLGSHWLGSFALLAMDVDIL
                     "
     gene            complement(2775..3728)
                     /locus_tag="KIL20_000465"
     CDS             complement(2775..3728)
                     /locus_tag="KIL20_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HBD2720520.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPYLSFFENKNATLMALIIGIIISSVVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(3715..4407)
                     /locus_tag="KIL20_000466"
     CDS             complement(3715..4407)
                     /locus_tag="KIL20_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HBD2720521.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            complement(4566..5135)
                     /gene="efp"
                     /locus_tag="KIL20_000467"
     CDS             complement(4566..5135)
                     /gene="efp"
                     /locus_tag="KIL20_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HBD2720522.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGE
                     AKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            5249..5569
                     /gene="rnpB"
                     /locus_tag="KIL20_000468"
     ncRNA           5249..5569
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="KIL20_000468"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(5567..5842)
                     /locus_tag="KIL20_000469"
     CDS             complement(5567..5842)
                     /locus_tag="KIL20_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720523.1"
                     /translation="MKQWLSDFKLALIQEDVNKLENLLDELDMKAFIKNLTKESPSED
                     FLKENANDLFYQVQALLQEAVMLIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(5823..6209)
                     /gene="fliS"
                     /locus_tag="KIL20_000470"
     CDS             complement(5823..6209)
                     /gene="fliS"
                     /locus_tag="KIL20_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HBD2720524.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLNYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            complement(6221..8149)
                     /gene="fliD"
                     /locus_tag="KIL20_000471"
     CDS             complement(6221..8149)
                     /gene="fliD"
                     /locus_tag="KIL20_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HBD2720525.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSQGLANDGGFVNAKLNGTADLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDAQGQYKSDSEA
                     EKIFKSLGWELDTTSSIDPANDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKTGSLSKYLNSNGGNTNGL
                     EFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQKLANHINSKGIEGLKVKVE
                     SYNQNNVTGFRLNFSGDGSSDFSIKGDANILKELGLSDVNITSKPIEGKGIFSKLKAT
                     LQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLN
                     QQLNTVTNMINAANNSNN"
     gene            complement(8152..8517)
                     /gene="flaG"
                     /locus_tag="KIL20_000472"
     CDS             complement(8152..8517)
                     /gene="flaG"
                     /locus_tag="KIL20_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HBD2720526.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQGQEGDDGQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            complement(8673..10475)
                     /locus_tag="KIL20_000473"
     CDS             complement(8673..10475)
                     /locus_tag="KIL20_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HBD2720527.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPMLKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPVKLTPCENGIFVPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYILNRFDAEKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            complement(10472..11395)
                     /gene="hemC"
                     /locus_tag="KIL20_000474"
     CDS             complement(10472..11395)
                     /gene="hemC"
                     /locus_tag="KIL20_000474"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HBD2720528.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLEIVSLRGNVNSRIEKLKNNKF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILKLLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(11392..11781)
                     /locus_tag="KIL20_000475"
     CDS             complement(11392..11781)
                     /locus_tag="KIL20_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HBD2720529.1"
                     /translation="MNYKLSLSPLFVLEIIASILFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLIFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(11778..13487)
                     /locus_tag="KIL20_000476"
     CDS             complement(11778..13487)
                     /locus_tag="KIL20_000476"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HBD2720530.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEIKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDVDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCAKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVAIEANHDEKGCIWNKTLAPFVLEIIISNLKDEKALEFANKLYEDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVIGKGLENNEIEFIQREGLIKELIKTDELMEILKK
                     KVL"
     gene            complement(13471..14769)
                     /locus_tag="KIL20_000477"
     CDS             complement(13471..14769)
                     /locus_tag="KIL20_000477"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HBD2720531.1"
                     /translation="MYYCISFTHKNTDIALREKLSFFNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNP
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELPYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(14769..15662)
                     /locus_tag="KIL20_000478"
     CDS             complement(14769..15662)
                     /locus_tag="KIL20_000478"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HBD2720532.1"
                     /translation="MQKIDELIKQFLQELGYEPILNMLSNVKSGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKASKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(15676..16212)
                     /locus_tag="KIL20_000479"
     CDS             complement(15676..16212)
                     /locus_tag="KIL20_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HBD2720533.1"
                     /translation="MFKISPCLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
BASE COUNT         5615 a         3091 c         1911 g         5626 t
ORIGIN      
        1 ccaaaccata gttttaaaat ttggcaattc tttgccaatt aaatttaatc taactccaca
       61 agcttttctt tcttttagtt ttttaagctc atcaaattta ataccttcat caaccacaac
      121 tatagctttt atattttcat ctttttcgat actctgaagc aaaaattcat tgtcaacacc
      181 taaaaaactt ggctgaacta aaaccccttt atcaaaacca taatgatcta aatttgcttt
      241 ataatcttta aaactagcat cataatcagg cttatatctt gcatttgcaa ccgtatttaa
      301 ctttttcaaa aatatatgtg catgagtatc aatcttcatt aaattatcct tataaaataa
      361 aactcattat aatagtagct aaaatcgccg ctataaatcc tataggcaca gctttaataa
      421 gtaaatcttt aaataatttt tccttatatt tgtcaggaca agatcctaaa attaaacttc
      481 ctccagaaga aaaaggagaa atagcagaag cttgagcccc tacaacaata caagaaaaaa
      541 gcaatgcctc gcttaatcca ctacttgcag caatgcttgg aactatagga aaaagcgctg
      601 gagtaaccac gcccaaagtg cttgaaaaaa gcgacataaa agctgcaata gcacacatta
      661 ttaacggaat aaaaatcaca ttgatctcat tttctacaag atctgaaaat aattttataa
      721 cccctgcttc aaccgctatg ctaattaaca tccctactcc acaaatcatt atcaaggttc
      781 cccaaggaat taaagcaaca acttgtttct catcggccaa ttttaaaaat aaagcaatgg
      841 caacaaaaat catggctatc atagctatat ctattttttt attaaaataa ctaattgtct
      901 cattatgtgg aaaaataata tttagcacag gaaagattaa aacaacaaca atcatcataa
      961 acataagaat taaagtagtt ttttgtttat aatcaaatga atcaggtttt gaaataacac
     1021 tgatttttat attattttta aaagcattaa acacaaaaaa agataatacc acaataggca
     1081 aaattatagt aaaagcaaaa ataatactag aatttacaaa agcttcattt gcttcaatgc
     1141 ctgaattttc catcaatcct cgaaaaataa tcccactttg agaagtcata aaatttgctc
     1201 ctcccaaagc accatagttt atagccatag ctccagcaat tttgcttaaa ccgattttat
     1261 cgcaaagtaa aaaagtaagt ggtgccataa aagctaaaac cgtataaaaa cctgctccta
     1321 aagcagctat aatagcacta accacaaaaa taacaaaagg aagcaaataa ggatgattag
     1381 caaaacgata catcaaatgt ccagctaatt tttcaagagt tccatttacg gttgcaaaat
     1441 tataaaacaa tgaaacagca aaaataacaa aaaatataga aataggccaa aaagctatga
     1501 tttttttagg agctaaatcc ataaaaaaag ctcctataat ataagcaaaa atcatagcaa
     1561 aaattccaac attatgtcta gtaatatagc ccaaaataat agccactata atactagaga
     1621 tgattaaaaa aaccattatc atcctttaaa atattatagg gcttataata tcaaaaaata
     1681 tatttttcaa agcataaaaa caaaatctaa atttaaaaaa tatctattta gtaacaaatc
     1741 tactcatctt atgaaatttt ttataaaata tccacatcca tagcaagcaa agcaaagctt
     1801 cctaaccaat gcgacccaag ataatcatct tctatatgag ctatggcttt atcaaaatgc
     1861 tctatagcat tatttcttaa aagaattttt aaattttcat cgcaaaaatt tgaaagtatt
     1921 ttaaaacacc aagcacgact taaatttagc ccatctagat gtgctatttt accatcgctc
     1981 ctatcactca cactcacagg ggtaaataaa gttacaggct cttttgcttc taaatttggc
     2041 aaatatactt taaaaaattt tacaaaatca tttttaggta aaacagcact taaaagcacc
     2101 gcttccatca aaacaggaga taaaaactca tctccacaag gctctaaagc ttgcatattt
     2161 ttatcattta aaaaccactt tttagcactt tggatgatgc aatactctaa ttcttgatct
     2221 tttttaaatc ttgcatactc taaagcaaaa tacaaagcaa aagagctatt aaaatgggtt
     2281 ccaactcgta taggataatc catcttaggc aaaaactcct taaattcttt aacaaaaaaa
     2341 tcagctatgc cttctaaatt tttagcccaa attttagctt tgtcattttc tttagcaagt
     2401 aaatttatct ccaaagccag ttttaaaaac catccccatc cataaggtct ttcaaaacct
     2461 ttgtgcgcag ggttttgaag atacttaagc tctccttctg ctttttcttt gctaaattga
     2521 gaatctaagg ctttgatgat ttcatccttt ggggcaaaat gagaaaaatc ttttaaaatt
     2581 ttcaccaaaa gccagtgaga atgcacgcta gaatgccaat cataagaacc ataaaatata
     2641 ggatacataa gttttggcgg tttaatatca ttgatatcat taaaagaatg tgtgatttta
     2701 tttggcaatt ctctaaaaat attttctagt gcaataaagc taaattgttt tataaatttt
     2761 tccattgttt ctccttaaaa tctaaaagct aaaaaataca ttaaaaagat attagctaca
     2821 agcaaaacaa gtcctgacat aaactgggct ttaattacgc catttttatc atctaaattt
     2881 aaaagtgccg caggaactat attaaaattt gcagccatag gcgtcattaa agttccgcaa
     2941 aatccactaa gcattccaat cgctcctata atagcaggat ttgcatgcat ttgtatgatt
     3001 aaaatcggca aagcaatagc agcagtaatc acaggaaaag ctgcaaaagc attacccatt
     3061 actatagtaa aaagcgccat agcaatacaa tacacagcta ctgcaataaa agcattatct
     3121 aaactaatat aactagataa aagtttagat acttgatcgc ccattcccgt agaaacaaaa
     3181 actactccaa gtgtagccaa aatttgcggt aaaagcgccg cccaactaat gtgatccata
     3241 gtatgtgctg catccttaac ggctctttta ggagaagcct taaacataaa acaagcaacc
     3301 actgaagaaa taattatacc tataatcaaa gccatcaatg tagcattttt attttcaaaa
     3361 aaactcaaat agggaaataa aaaagtccca ataagtgtaa tcaaaggaac cattaaagca
     3421 ggaataaaaa gtttattttt ataaatattt gcatgtttta tctcgtattc tttttcttct
     3481 ttactaactt caatctttgc tggttttaat aaattaaatc ctgctataag tgctagtaaa
     3541 atcactatac aacccatcac aaaatgaggc aaaactcctg ctagtaaaaa agtaaaacta
     3601 taacttatcc agaatacccc gccgcttatt cttgatttta tatctttagc ttgattagaa
     3661 aaacttaaaa ttccaaaaac taaaaataaa attcctacaa tataataaag caaatcaaga
     3721 cttatcatca ctcaaccctt tataagtttt ttctaatctt ttatcaaata aataaagtct
     3781 agaacaatgg ataattaaag ccaaaattcc agttggtata gcccaaactg ataaatgcaa
     3841 tggctcaaca ataataccat tgctctcata aaaagcttta ataaataaaa tagaatgcac
     3901 ggctataaaa atatcctctc caaaaaatac agcaacatta tccgttcccg cagaaaaagc
     3961 tttgattttt tgactatctt tatgtgttaa gtttttaaat ttaagcttag ctgcagcttc
     4021 tgccataggg gctattaaag gtcttatcat ctgtgcatgt ccgcctaaag ataaaagccc
     4081 taaagctgca gtaacttgtc taaaaacaaa ataacacatt aaaattcgtc ctgtactggc
     4141 aacttttatt ttggatatta aatttttagc ctgctctctt aagcctttgc gttccaaaac
     4201 agcaagtaaa ggtaaaataa gccaaattat agcaacatag cgattatcta caaaagattt
     4261 tcctatatca ctaacaacct taacaaaatc aaaacctgaa acaagtccag cataaattcc
     4321 aactgaagtt accactaaaa aggggttaat ctttaaagca aaacctaaaa caatcaaagg
     4381 tatagaagca agaagtaacc attccatcaa ccatctccac aatataaatt agaaatatta
     4441 tagaaatttt aaattaaaga aaagtttaaa aaaatatttt taagaatgga atgagaaatt
     4501 aagtaacaaa ataaatttta tataaattta aaaaagcctt ggaatagtcc aaaagctttt
     4561 ttgtattact tgttcgctct ttctatatac tcaccacgca cagtatcaac gcgtataact
     4621 tcaccttcta gcacgtgaaa aggaatttgc actactgcac ctgtttctaa tgtagctggt
     4681 tttttatttg atccttgagt atcaccctta aaatttggag ctgtttcgat gattttgagt
     4741 tcaacaactt gtggaacttc tacgccgata gctttaccat tgtggaaaag cacatctacc
     4801 atcataccat caagcatcca tttttttgcc tcacctacat catcatcact gatagctact
     4861 tgttcatatg tttgtgtatc cataaattgg caattttcac catcatcata aagatactgc
     4921 atagttttat cttctaaatt tggagcttca catttatcac ctgcatggaa agttttttca
     4981 agtactttac catcaataaa agatttgatt ttaatacgca caaaagcagg acctttgcct
     5041 ggttttacat gctgatactc aactatttta aaaggaattc catcgatttc tattttaagt
     5101 ccctttttta aatcacccat tgaataagat gccataaatt tcctttgtta aaaaataaaa
     5161 aataatttta tcaaattttg attgatatca caataaaatt attttatttg atgaaaaaat
     5221 aagtaaaatt acgttaaaat ccaaatttaa agcatagtaa atgctcgctt ctttttagaa
     5281 gaggaaagtc cgggctgcta aagacaaaca ttccatctaa cagatggcta gggtaaccta
     5341 agggatagtg caacagaaag aaaactacca cgcaagtgga aaaggtgaaa cggcggggta
     5401 aaagcccacc agcgattttg gtaacaattt cggctatgta aacccaatgt gcagcaagaa
     5461 gggatggtta gcgtctttgt tttaaccctt cgcttgattt tgtttgcaaa aacaaaacta
     5521 gataaatgag cattcaagac agaactcggc ttatcgctat gcttttttaa gatttaaaat
     5581 atgtcaacgc tttttgaaat ttttgaattt caacggcttt tgtttttttc ttttgttcaa
     5641 tcagcataac agcttcttgc aaaagagctt gaacttgata aaatagatca tttgcatttt
     5701 cttttaaaaa atcttctgaa ggcgattctt tggttaaatt tttaataaaa gctttcatat
     5761 caagttcatc aagtaaattt tcaagtttat tgacatcttc ttggattaat gcaagtttaa
     5821 aatcactgag ccactgtttc attgttatgc acttctctcc aagcttctag caaacctttg
     5881 gttacattta taacttcatt gattctatct tcgttatttt ctaaatttgc caaagataaa
     5941 agttgaattt ctcttgtata aagcccgctt aaataatgtg ccacttctcc gcctttttca
     6001 tagtttaaag tattaataag ctctataaaa atagccgtgg ttctttttac aaaatacact
     6061 ctttgttcta tatcttcatt tcttatggct actttagctc ttgcacaaaa acgcaaaatt
     6121 ccctcataaa gcatttcaat aagtttttgc ggggactcta tccccacttg attttgagaa
     6181 taagcattat aggctaaatt attttgcatc ttttttatcc ttaattatta gaattgtttg
     6241 ccgcattaat catattagtc acagtattta gctgttgatt gagtttattt aaaatactct
     6301 catattgcaa ccattgattc gccattgtat catatcttgt atcaatcata gcctgagtcg
     6361 agtctttaga ggtatttaat gatttaatat catttgtcaa actctcatca tattttgtaa
     6421 ttgaaccatc ttttccagtc atctcttgca acgtggcttt taattttgaa aaaatacctt
     6481 taccttctat aggcttagag gttatattta cgtcagacaa acctaattcc ttgagaatgt
     6541 tagcatctcc tttgattgaa aaatccgagc taccatctcc actaaaattc aacctaaacc
     6601 ctgtaacatt gttttgatta taggattcaa ccttaacttt taagccttca atacctttac
     6661 tgtttatatg attagctaat ttttgaagca attcttcctc tgttttccct gttaatttaa
     6721 aattagtacc atcagaattt ttagataaat catatgtttg attattaaaa actatagtaa
     6781 aatctcctgg tttaaattct aaaccattag tattacctcc attggaatta agatatttac
     6841 ttaaacttcc tgtcttaatt acctctcctg tgtgattaat gtcttcgtat ttagtaatat
     6901 ttgaaaaaaa actttcagta gagtctggat cttctttaac tttttgttca aatttagaag
     6961 aatcaaaact caaagtgcct gcatcattta aacttaagcc aaaatcctgc atagaaagca
     7021 taaccttagt gtttacttta ttaccatttg catcttcagt agttccatca acaacttgag
     7081 aatcaaacaa atcagcaaga atgcttgagc gtattgaatt tacttcactg atgccttgta
     7141 aagttccttt tgttccagtt tcactattat agtcagttgc agcattaaga ttggttacta
     7201 aatcattata agcatccacc aaatcttgca tggcttttgt cacaccttca aaatcttgct
     7261 gtacatcaaa attaatttca cctgttttat ttaaagttaa agtcattcct acaccaagat
     7321 cggtaacagt attacttgat ctaaacatct taataccatc aagtgtgaat tctgcatttt
     7381 gcgcagtttg gatatgcaaa gaagcatcct taataccata acctttttta tcgttagctg
     7441 gatcaataga actcgttgta tctaattccc atccaagact tttgaatatt ttttctgcct
     7501 ctgaatcact tttatactga ccctgcgcat ctttttttcc tgcatagaaa cttatcgcac
     7561 tgtcttcgcc tgtttcttta ctggttaaag ttaagcggta aggagtacct ttctctcctg
     7621 tgtttacaat cttagcgaca atctctcctc cactagcttc attaatttta tcagctaaat
     7681 ctctataggt tgtgttttta tctaccgtaa cagtatattc tttgccattt gaaaaaaaag
     7741 taagatcggc agttccattt aattttgcat taacaaaacc accatcattt gccaatcctt
     7801 gactttgata tacatctttt tgtgcaagtt gagtaacatt gatattcatg ctttgtaaag
     7861 caacacccga attaactgta agacttgctg gaggattatc gctaatactt cctacaactt
     7921 ttcttttcgc aaaaaccgta gcatcggcta atgatgaaac agccgtctga aaacttagta
     7981 atttagtttt gatttctgtt aaatcttttt gtttggttgt attttcttca atttttttag
     8041 tataaggatc aatacgagct ttttgctctg cttcttttaa tttatctata gtatcttgag
     8101 ttaaaacccc agaaccaaat cctaaactag atagactacc aaatgccatt tttaactctc
     8161 cttatcaaat atcattccta tcacatccct aaaatactca gctaatctca tagcttcttc
     8221 actaggaatt tgacggattt cccttccagt gcttttttca gtcacgctaa tatacataga
     8281 accgatttta tcactataac caaaacgaac attggtatct agagaatcca tttgctcatt
     8341 taactttttt gtaatatcag ccaacttttc actcacacct cgttgctgtc catcatcgcc
     8401 ttcttggcct tgacttctat cggtttgaat gtttaaacta gcctgtgtct cacttgttct
     8461 ttggctaatg tttgccaaag ctgtatccat ttgcccattt gccttcgata tttccatttt
     8521 aaaatccttt ttaaaatttc ctattgctag ttaaaagctt atatcgacaa atttataaat
     8581 ttatgaacac ctataaagaa aattttattt ttcaataata aaaaataata agcaaaaact
     8641 gtgccaaaat tttaaaataa atctcaatta tcttaaaaaa tttcaaattt attaaaaaga
     8701 tctggattat tttctaaaat attacgcaag atcaaatctt ctatcacgct tttagtgcaa
     8761 tctgtttgct taggccaagc tcttaaataa ccctcagctt cacctttagc acttgcatct
     8821 actccaagtc tttcttcttt gataaaaata tctcttttag catctatatt atttaccaca
     8881 cgccaaacaa gcatataaga attttcaagc ttattttcag catctaaaaa tactaaaatc
     8941 ctaaaatgtt ttttaaattc taaaagtttg tcaaaacttt gttcgatttt ttctttttta
     9001 tcaagcaaaa tacaaactat aggactttta ctttctttat aaaattgctt taaatttaaa
     9061 agttctacct tagttttaaa aagttctagt aatttttcat cttctaaaat ttcaagctct
     9121 tcaacttgta tttcttcaca agcatcaagt cctgctttac ccccaaaaca agaattaggc
     9181 gaagcatgat ctaattgatc acaaattcct tctgaaatta aaattttttc cgcatcaaaa
     9241 cgatttaaaa tataaggaat taaagcatca taatctttca aagaaggtgc atttttatcc
     9301 acaaaaattg catgtttaac aaaactcatt tgccctactc cccaaaatgc atgcataatt
     9361 tgttgcgcat gagcaggata ttttgcatcg atttttgcta agataagatt atgaaagact
     9421 ccattttcag gcatattata atcaattaaa tcaggcaccg aagtttgaag caagggtaaa
     9481 aaaattcttt cagtaccaag ccccatgatc ttatcttcta aaggaggttt ccctacaacc
     9541 gttgcttgat agatcgcatc ttttttagca taaatttttt ctactttcat cacaggaaaa
     9601 agttcagcag gagtataaaa acccgtatga tctccaaaag gaccttcgat tttaaactct
     9661 tctaaatcca cataaccttc aataactaca tcactatcat aaggcacaaa aataccattt
     9721 tcacaaggag taagttttac aggagttttt ttaataaaac cataaagcaa aagttcaaaa
     9781 attcccttag gtaaaggtgc ttgagaacac caaatataaa gcggatctcc acctatggct
     9841 atacttacag gcattttttt aaaaccagca tttttgtatt cgtgataaaa atttgctcca
     9901 tctttatgaa tttgccaatg cattaaaagt tcatttttat cactcatttg caaacgatac
     9961 attccaagat tattttgagt tttatctaaa ttttgtgtat aaacttgccc catggtaata
    10021 aatttacccg catcatcttc ccaagttttt agcatgggaa gttcttcaag ggagtttaaa
    10081 atttcataat catacaaggc tttatttttt ttcagtcttt taggaggaat atttttaaaa
    10141 cttaacaaat tcataaaaaa atccattttt gctttaaaac tcgtaggaat atgaagcttg
    10201 gtgagttttg aaatttcttc agccacctct tcataatcac gcccaaaagc taaatttaaa
    10261 gccttttcat tgcaaaaagt attcatcaaa acaggaaatt tatattgttt atttaatttt
    10321 ttatctatag gatttttaaa taataaagcc ttaccttttt ctcctttttt agcttctata
    10381 taagctaaat gagcgatttc aagatctaca tctacaggct cttcaattac ccttaaaaga
    10441 tcattttctt ttaaaatttg aataaattct ttcatatcat actctcagct ttttttaaaa
    10501 gttctttagc acctttagca ataaactcct tagccaaact ctccccaaaa cctttaaaat
    10561 cattcttttt aatcattctt ttatctttta aaatttcact tccatcgggt agtccaagta
    10621 ccgcacgcac acaaatttca tctcctaaaa gctctgcgtt aatacctata ggaacttgac
    10681 aacccccttc taaagtagca ataaattctc tttcaatgct tgtttcaatc aaagcatttt
    10741 catcatttaa acattttaaa agttttaaaa ttttttcatc atttatactt tctataccta
    10801 aagctccttg agaagctgca ggaataagct catctttact aaattcataa acaaaattca
    10861 cttgcttatc taagtttaag cgtttaattc ccgccatagc taaaataatc gcatcaaatt
    10921 tattattttt taatttctct atacgagaat taacattacc acgcaaagaa acaatttcta
    10981 aatcaggtct taacaataaa agctgcatct tgcgtctaag actagtagtg cctatttttg
    11041 caccttttgg caaagaaaga aaatctttat aattttgact tagcatagca tcattgcttt
    11101 gctctctttt acttaccgcc gccaaaacta aaccttgagg aaaaaaacta ggcacatctt
    11161 ttaaactatg tactgctaag tgtgcttctt ttctcaacat actttcttca agttcttttg
    11221 taaaaagtcc tttaccacca atttttgcca aaggagaatc cagcaaaaca tcgccttttg
    11281 ttttaaaacc ttctaaaagc acttcaattt gatgtgtatt ttttaaaatt tgggctacat
    11341 gctcactttg ccaaagagct aattgacttt ttcttgttgc gataataagc ttcattttct
    11401 atcctctata atttcaacat caataatttc ttcattagaa ttttgatact cttgcttggt
    11461 gtattgatat tttgatttag ttattaattt caaagcaata ccaaagaaaa atacaaaaat
    11521 tccaaaaaca cttgtaataa tccctggaaa aataagtaaa aaccctgcaa taacaaaaga
    11581 aaattgtgtt aacatatcct ttaagccgcc catttgaaat tcaagcatat ttttccaaaa
    11641 aattcccaat aaaaccgcac caaaaatcat actcaaaagt atgaaaaata aaaaattacc
    11701 aaaaccaaaa aacactataa aaagtatact tgcaataatt tcaagtacaa ataaagggct
    11761 taaacttaat ttataattca taacactttc tttttaagaa tttccataag ttcatcagtt
    11821 tttataagtt cttttatcaa accttctctt tggataaact ctatttcatt attttctaat
    11881 cctttaccaa taactaatgc ataaggaaaa cccataagtt caaaatcatt cattttaacc
    11941 ccaaaacgct catttctatc atcaagcaat acttctaatc caagattagt taaatcctca
    12001 taaagcttat tagcaaattc taaagccttt tcatctttga gatttgaaat aataatttca
    12061 agcacaaaag gagctaaagt tttattccaa atacatcctt tttcatcatg atttgcttca
    12121 atagctacag ccaataagcg tgaaacacct ataccgtaac atcccatgta aaaaggctgg
    12181 cttttgccat tttcatctaa aaaatttgca ttcatcgctt tagaatattt ttgtccgagt
    12241 ttaaaaatat gccctacttc tatacctttg ctttgtttta attttgctcc acatttagca
    12301 cagcaatccc cttccttaac ttcaatcaaa tctttaaaac gatctttgtt taaatttaca
    12361 acatcaatgc cgattaaatg ataatctttt tcattcgcac ccataatcat ctgcttttcg
    12421 ttttcaagct caaaatctat ataaaaatct acatctttta atcccacaaa acctataaaa
    12481 ccagctacca aaccagcttt ttctaattct tcttcgctcg catcgactag ttcaagggca
    12541 ctacaagcat tttgagcctt gatttcttgt aaatcatcac ttcctcttat aaaaaacaca
    12601 actaatttgc tttcattttc gtaaatagct ttttttacca ctgctttaat cgtataaaaa
    12661 gcattgattt taaaaaattg tgctaaagaa tctatagttt taatatttgg agtgtgaaat
    12721 ttactcgcat aatttgcttc aggacgctca tcttgacaag tttttttagc tctttttgca
    12781 gcttcaacat tagccgcata atcacaattt tcacaaatta aaatatcatc ttctccattt
    12841 tttgctaaaa ccataaattc cttagaacca cttccaccaa tagccccact atcagcttca
    12901 actgctctaa aatcaagccc cattctttgt aaaatttgag aataagtttt atacataagc
    12961 tcaaactcac gccctaaatc ttcttcatta gcatgaaaac tgtatccatc tttcattaga
    13021 aattcacgac atcttaaaag cccaaatcta ggccttgctt catcacgaaa tttaagtcca
    13081 atttgatata aatgcaaagg aagttgttta tagcttgtga ttttgttttt taccaaagaa
    13141 agcatagctt cttcatgtgt tggacctaaa acaaattcat tttcttttct gtctttaaaa
    13201 cgcaaaagtt cttttccaaa aacattataa cgcccacttt cttgccacaa acttgcagga
    13261 gtgataaaac taagatttac ttcttgtgct ccagccttat ccatttcttc tttaactata
    13321 tttttaatct tatctaaaac tctttttccc aaaggcaaga aattataaag tccactgcca
    13381 atttgttcta caaaacccgc acgcgttaaa aaaatatgac taggcaaact cgcatctttt
    13441 ggtgcttctt ttaaacttgg tgcataaaat ttagtaaatc tcatcattat tctccatatc
    13501 aaattcacat ttatattgat ttaaaccttc aagattattt tgtaaatcaa aaacataacg
    13561 catagcatta atcactgtat cgctttgcat tttaccttgt aaatgtttca aattcacagt
    13621 aggtgtgtgt aaaaaagcct taaaaacttg atgaatcaac tttctagcct cttctttatc
    13681 agattttttc aaatatcctt tttttaacgc aatttcaagt tgtttatctg catattcttt
    13741 agcttgcaag cgtatggctt tgataatagg catcaaagcc aaatcgttta aatacctaaa
    13801 aaattcactt gtttcacgac ctattatccc ataagccata cgagcttctt gttctcttag
    13861 tgctaaattt ttttgaacca caatctcaag atcatctacg gcaaaaacag atatattttc
    13921 attttcattg atatcaatat cccttggaac tgcaatatca aaaaaatacc ttttataagg
    13981 aagttcttct attagagaat ttgtaataat agcatttggt gcattagtag ctgagaaaaa
    14041 aaactcgtat tgatttaaat atttttttaa attttctaaa ctatcatatt cgcttaaaac
    14101 accaagtctc tcacacaaat ctttagcttt ttgtaaatca cgatttaaaa taatcacttt
    14161 agcacccgca gcaattaaat gttttgccgc aagttctccc atctctccag ctccaataac
    14221 aacagctttt ttttgcgtta aatctgcaag ttcttttgct tttgccacgg caacactagc
    14281 tacagagata ggatttttag aaatttgagt ttcattgcgt accttagcag cacatttaaa
    14341 agcactatgt actgctcttg aaagatgtac tccgcaaaaa ttatttttta ctgcaaaagc
    14401 aaaggcatct tttaattgcc ctgctatctg agtttctcca accaccaaac tatccaaaga
    14461 acttgctacg gaaaaaagat gatggattgc tccactatct tcaaaaatat cagctttttc
    14521 aagtaaaata tctttatcca catcacaaag caaagccaaa gatttaacaa taaactccgc
    14581 acaagccatt tttacaaaag caacaatttc aacacgattg caagtactta taaccaaaca
    14641 ttcttcaata ttttcatgag tgctaatgat ttttaaaaac tcactttttt tagcttcatt
    14701 gaaaaagctt aacttttccc ttaaggcaat atctgtattt ttatgagtaa aagatataca
    14761 ataatacatt aaaattccct atctatcata gctttaataa tatcattaag cttgttatta
    14821 tcatattttt caatcgcttt actagccttt tttgcataag ttttagcttc taaaatagct
    14881 ttttctaaag ctttttgttc ttcaaattta gtttttagcc actctttttc attttcattt
    14941 aaatcttttt taaataaagt ctgcaaatat atcctatctt gttcttgcaa attttcataa
    15001 agataaatat aaggtaaggt agtcttaccc tctttaaaat cattcatagc aggttttcca
    15061 agaatttttt catcactctt aatatctaaa atatcatcaa tcatctgaaa agcgagtcct
    15121 aaattttttc catattctgc aaaatctttt tcatataatc cagccaaaat agctccgcat
    15181 ctcgcacttg cttcaatcaa aacagctgtt ttattataga tcattttcaa ataagcttct
    15241 ttattgatat taaatttctc tcccaaatca acatccataa gttcgcctat agcaagcttt
    15301 acaacagcat ctgaaataat acttgcaaat ctagcatcca ttttgcttaa ttcataaaag
    15361 gcttttgaat acaaaatatc gcccaacata agagcatttt ttgtaccaaa ttcagcatta
    15421 acagatcttg ctccacgcct taattcactc tcatcgataa tatcatcatg taacaaacta
    15481 gcaagatgta tcaattctat agccgcacaa attttaaaag caatctcact ctcatctgcg
    15541 atagctaata ataatttaga gcgtaatttc tttcctgatt ttacatttga aagcatattt
    15601 aaaataggtt catagccaag ctcttgtaaa aactgtttta ttaattcatc tattttttgc
    15661 actatctttt ccttgttaat tgctattatt attttctttg cttgttaatg gttttacctg
    15721 aggttcgtta aaattaatca taggaacaac ctgattattt tgcggtggat tttgtaaagc
    15781 tttttttctc ggatctaaaa attctaccat taagcgagat tccttatctt ctatataaac
    15841 cgtaaaagtt gccaaacctt tattataacc actaaattct aaaataagtc ttgctctatc
    15901 aatatgtgga ttagtataat caggtattaa agtttgagtt acccaatcta aatttcttct
    15961 taaactcatc acaaattgac gcggatattt gcgaaatttc gaatgtacga tgatattagt
    16021 attatcaaac aaagtccaat aaaaatcaaa attttgcacc ttatcttcat agcctatttc
    16081 tttaatctgc acactagctc tctcatcttt tttaagtata aatttataag tataatcaaa
    16141 agttggttca gatgctaaaa cattactaaa aataaaaaaa atacaaatta aacaagggct
    16201 tattttaaac aattttagcc ttcgtgtcct aaaatttttg cgc
//
LOCUS       DAEBKH010000021        16111 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.021, whole genome shotgun sequence.
ACCESSION   DAEBKH010000021 DAEBKH010000000
VERSION     DAEBKH010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16111)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16111)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16111
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.021"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(147..1343)
                     /locus_tag="KIL20_000480"
     CDS             complement(147..1343)
                     /locus_tag="KIL20_000480"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HBD2720534.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCEPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            1483..2706
                     /gene="sstT"
                     /locus_tag="KIL20_000481"
     CDS             1483..2706
                     /gene="sstT"
                     /locus_tag="KIL20_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HBD2720535.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIVLGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFLASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSEIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFIVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVTTMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYGISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            2716..3603
                     /locus_tag="KIL20_000482"
     CDS             2716..3603
                     /locus_tag="KIL20_000482"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HBD2720536.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLKGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVSRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHIHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGDVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSDERTLVLKQVK
                     NGVAIRMAALKKLILENEG"
     gene            3607..5328
                     /locus_tag="KIL20_000483"
     CDS             3607..5328
                     /locus_tag="KIL20_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HBD2720537.1"
                     /translation="MLEWDLSALFHDKEALQNFTQDQIQQSLNFKKNYENKLYALNAN
                     EFLQALKDYENLNQALGKIMTYAYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELAPEKSQEFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEILSKMYDEDRKTRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYDIAKNAFNQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTDKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQKMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            5322..5759
                     /locus_tag="KIL20_000484"
     CDS             5322..5759
                     /locus_tag="KIL20_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720538.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDVKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQIENNILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            5756..7831
                     /locus_tag="KIL20_000485"
     CDS             5756..7831
                     /locus_tag="KIL20_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HBD2720539.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIKYISYCKNEGKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAVLFRVNALSRAIEEAFMKEKISYKLLSGMRFYERLEIKD
                     LISYLRLILNPNDDLSFRRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPEASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVAITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            7828..8646
                     /gene="truB"
                     /locus_tag="KIL20_000486"
     CDS             7828..8646
                     /gene="truB"
                     /locus_tag="KIL20_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HBD2720540.1"
                     /translation="MNKIFAAFKPRGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIKNIKEFDLANLQQII
                     DQMQGIISYTPPQFSAKRINGTRAYELAKKGIEANLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYINLKPNF
                     IKDLNKLENGAKIFVEELKFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            8640..8867
                     /gene="csrA"
                     /locus_tag="KIL20_000487"
     CDS             8640..8867
                     /gene="csrA"
                     /locus_tag="KIL20_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HBD2720541.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            8864..9631
                     /locus_tag="KIL20_000488"
     CDS             8864..9631
                     /locus_tag="KIL20_000488"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HBD2720542.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDLFDELELVDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSKRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLMNETLNLKLNLQELINLSIQLGSDIAFFLSGFHSANVSGCGEIIEEF
                     EDDIPNLKWTFPQISCQTKAVYDEFDRGIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDR"
     gene            9628..10080
                     /gene="smpB"
                     /locus_tag="KIL20_000489"
     CDS             9628..10080
                     /gene="smpB"
                     /locus_tag="KIL20_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HBD2720543.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGKNLHDKRETLKKKQADLEARAAMKNYK"
     gene            10091..10693
                     /locus_tag="KIL20_000490"
     CDS             10091..10693
                     /locus_tag="KIL20_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HBD2720544.1"
                     /translation="MKKILTLFLISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFADDYGAYYFLSNGGSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNAPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            10693..10983
                     /locus_tag="KIL20_000491"
     CDS             10693..10983
                     /locus_tag="KIL20_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HBD2720545.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVIDAAKLANFPLQAKVEEE"
     gene            10980..13109
                     /locus_tag="KIL20_000492"
     CDS             10980..13109
                     /locus_tag="KIL20_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HBD2720546.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSIDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIQDSRSYSSYLLKKHNINLTKIQELQNHENIQNLSNHTSNLTLLAQNGKIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILNELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDCAIDLIDELGASFALNPKAKKNAN
                     LKDLENVLAKMTHHHKMFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTEFCKALAEFLGLNLERFDMSEYAEKHAISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSVDDKVKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNGKLEFIF"
     gene            13084..13731
                     /locus_tag="KIL20_000493"
     CDS             13084..13731
                     /locus_tag="KIL20_000493"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HBD2720547.1"
                     /translation="MESSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKVAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(13754..15043)
                     /gene="cetZ"
                     /locus_tag="KIL20_000494"
     CDS             complement(13754..15043)
                     /gene="cetZ"
                     /locus_tag="KIL20_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HBD2720548.1"
                     /translation="MFGAKKNNTEIIEQLEKKCNGLGDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYSDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGHVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLRLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
     gene            complement(15124..15750)
                     /locus_tag="KIL20_000495"
     CDS             complement(15124..15750)
                     /locus_tag="KIL20_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HBD2720549.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLLSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIAAMGFKMIIVGLKDIFNL"
     gene            complement(15765..>16111)
                     /locus_tag="KIL20_000496"
     CDS             complement(15765..>16111)
                     /locus_tag="KIL20_000496"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HBD2720550.1"
                     /translation="EEEKKVILNKGTEAPFSGKYNDFYEKGIYQCKQCGASLYKSEDK
                     FKSGCGWPSFDDEIKGAVKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKNVRHCV
                     NSISLEFVKTKD"
BASE COUNT         6033 a         2457 c         2367 g         5254 t
ORIGIN      
        1 aagctaaatt aatttagctt ccttcctaac ttttatattt atgagggata ttgaaaaata
       61 tccctctaag tcaaaaatta atataacctc attaattctt tataattata caagccttat
      121 ttaagcttgt ataaattgtt aattttttaa agtagctttt taaactgttc tagagcatca
      181 agtttttccc aaggatagtc cttttgtcct acttgcccac gagctgctac atccgcataa
      241 agaaaagttt ctttacttgg tttatccaga tgaaatttat cacgaatcca atttggtgtt
      301 aaagagaaat tttgcataac aaaatcactt aaaacatcgt catttacact agtatttgtg
      361 cccatacaat ccacgcttac cgaagtaggt tttgcaacac ctatagcata gctaagttga
      421 acaatacatt ttttagcaag ccctgctgca actatgtttt tagctagcca tctacctgca
      481 taaagtccac ttctatcaac cttagtataa tctttgctcg attgtgcgcc accacctatt
      541 ggagaataac ctccaaaact atctactata agctttcttc ctgttaaacc actatcatgc
      601 aaagaagaat gattaacata tttaccggtt ggattaatta aaattctagt tttattagga
      661 tcaaaaagtt cttttggtaa attactatct aagataagtt tcatcaccaa agatcttaaa
      721 tcttctattt tcatactttc aacacaaggt gcagaaacta ctatagtatg gatactttgc
      781 ggttcgcaat tttcaaaatt cgccttagta ccataatcaa tagttacttg agttttaata
      841 tctactccaa gttcatgtgg atttgctttt gcataagcat aaactctatc gcatagcatt
      901 cttgcataac taatagctgc tggcatgtat tcttcagctt cgcaacttgc aaaaccaaac
      961 ataatacctt gatcacctgc tcctgtttcg ccatcttctt gatcgacacc ttgattgata
     1021 tcagggcttt gttcatttaa aaacaccata acatcaactt catcaggatg caaacactgc
     1081 tctttactaa aatgccctgc tccgtcataa ccaatgtttt ttaaaacatc tttaactaaa
     1141 ttatcgtaat cagctttact aagcttgtga tttgacttaa cttcgcctcc tatcacaacc
     1201 ttatttcctg cgacaaaaac ctcactcgcc acccttgaat ttttgtcatt tttcaagagt
     1261 atatccacta tcgtatcagc gattatatca gcgcacttgt ctggatgacc tgcacttacg
     1321 acttctgaag tgaatagata cataaaaagt cctttcattt aaaatgaacc acaattgtat
     1381 ccaaataaac ttatcaaagc ttgataaatt aaaaatttac taaaattaag caaaagttag
     1441 ttaaaatcaa cttctgatat aaaaaatatt taaaaggttt ttatgttttc taaaatcatt
     1501 caaagctacg ctaaaggcaa cctcatagtt caaatttgta taggtatagt actaggaata
     1561 ctcataggca ttagctctaa agaaatatct gaaattgcaa atttactcgg aatacttttt
     1621 acaagtgcct taaaagctat cgctcctatg cttgttttta ttttaatttt aacctcaatt
     1681 tgcactaaag atttttctca aagtggtgct aagatcaaaa atattattat tttgtatata
     1741 gtaggcacct ttcttgcttc agcttgtgcg gttcttgcta attttttctt ccctgtaaag
     1801 cttgttttag atggagttca aaccgctaca aactcatctc caacccacat gagtgagatt
     1861 ttcaaagatc ttttatttaa aattgtcgat aatcctataa atgctctatc aagtggaaat
     1921 tatttaggaa ttttaacttg ggcaatagcc ggaggtatag cattaaaaca ctgttctaac
     1981 gaagcaaaac aagtttttat agatatcaat gaaggggttt taaaaattgt taaatttata
     2041 gtaaaacttg ctccttttgg aatttttgga cttgtggcta attctgtagc acaaacagga
     2101 gcgcaaggtt tactaagtta tgtaaaactt ttaattttac ttgtaactac tatgcttttt
     2161 gttacttttg ttattaatgc cttaatagtc tttttttata caagaaaaaa tccttttcct
     2221 ttgattttta tctgcttaag gcacagtgca ttttttgctt tttttacaag aagttcggca
     2281 gcaaatattc ctgtaaatat ggcactttgt gccaaacttg gcatagataa agaattttat
     2341 ggcatttcta tacctttagg agctactatc aacatggcag gagcggcagt tactatagct
     2401 attttaagcc ttactgcagc caataccgtt ggtatagaaa tcagtctttt acaagccttt
     2461 ttattaagca ttattgctac ctttgcagct tgtggggcta gcggagttgc gggcggatct
     2521 ttactgctta tacctttggc ttgttcttta tttaatatag actatgatat tgctatgaag
     2581 gtagttgcca taggttttat tataggggtt attcaagata gtgttgaaac tgctttaaat
     2641 agttctacag atgttctttt tacagcaatt tgttctaaaa atgaattaaa ttacaatatc
     2701 aaataaggta aaaacatgcg tcatctcatc actacaaaag attttaataa agtcgaaatt
     2761 atggagcttt ttaaagaagc aagtgatttc ttagatgaaa aacctagaac ttttcttaaa
     2821 ggaaaaagta tcacgacaat tttttttgaa aactctacac gcaccctttc atcttttgaa
     2881 agcgctgcaa gaagattagg cgctagggtt ttacgccttg atgtttcaag atcaagctct
     2941 agcaaaggag aaactcttta tgatactgct gctaatttag atgccatgag tcctaatgct
     3001 attgttgtaa gacacgcaaa ctcaggagtt cccttgatat tagcaaagca tatacattgt
     3061 ccagttgtta atggaggaga tggaaaacac gcccatccta ctcaagcttt gctagattta
     3121 tttactattt ataatcattt tcaaggtgat gtcgaaggta agaaaatttg catcgtaggt
     3181 gatattaaaa attcccgcgt tgcagcgtct aatatagaac ttttaagcag atttaatctt
     3241 gatattaccc tagtagctcc accgcatttt atgcctaata cccatcttaa aaaacattat
     3301 aagcttgatg agaatatcat agcaaattca gatattatca tgagtcttag aacacaaaca
     3361 gaaagacata ataaaaccgt ttacgcttca cttaaagact atgcaaatga tttttgtatt
     3421 caaaaaagct tagtaaaaga taaaaagctt attttactac atccaggccc tgtaaatcgc
     3481 aatattgaca taagcgatga aatgatgagc gatgaaagaa ctttagtttt aaaacaagtt
     3541 aaaaatggag tggccattag aatggctgct cttaaaaaac tcatattaga aaatgaagga
     3601 taaaaaatgt tagaatggga tttaagtgct ttattccacg ataaagaagc attacaaaat
     3661 tttacacaag atcaaatcca acaaagttta aatttcaaaa aaaactatga aaataaactt
     3721 tatgcattaa atgctaatga gtttttacaa gctttaaaag attatgaaaa tttaaatcaa
     3781 gcccttggca aaatcatgac ttatgcttat ttactttttg ctaaaaacac tcaaaatggt
     3841 tctttttatg cacaatacga agaagaatgc aaaaaaatag aagaaaattt actctttttc
     3901 gagcttgaat tttgcgagtt agctcctgag aaaagtcaag aatttacaac tttttgcaaa
     3961 gattatgatt tttatctttc taatttattg caaaacaaac gctataatct tagcaaaaac
     4021 gaagaacgca ttatgctcta tctttcaaat acaggtgcaa atgcttttag tagacttttt
     4081 gatgaaagta tgagtgcttt aaagatccct tttgaaggta aaaaacttag cgaagaagaa
     4141 attctaagca aaatgtatga tgaagataga aaaacacgca aaaaagctgc taaaaaattc
     4201 agtaaagttt tgcaaaaaaa tagcagactt ttaagtttta ttatcaatat gataaaaaca
     4261 gaaagaaaaa atataagctt attaagaggt tatgaaaatg ctgaaatttc aagacatatc
     4321 agtaatcaaa tttcacaaaa aagcgttgat tctttgatag caagcgcaca aaaacatttt
     4381 aacttagtat cgcaatttta caaaagaaaa aaacaaattt taggctatga tgagcttaaa
     4441 gactacgaca gatatgcacc cataggaaaa gaagcaagtt ttgattttaa aacaagtaaa
     4501 aatattgttt tagaggcatt tcaagctttt tctccgcaat tttatgatat agcaaaaaat
     4561 gcttttaatc aaggctggat tgatgtttat ccacaagaaa ataaacaagg gggtgctttt
     4621 tcacattctg caacttctga tgcgcatcct tttgttttat taaactacac cgataaaagg
     4681 cgtgatcttt ttacacttgc acatgaatta ggacatacta tccatcaaaa actttcttac
     4741 aatgtaagct acttaaatca aaacacacct ttaaccaccg cagaaacagc ttcagttttt
     4801 gctgaaatgc tggtatttga ttttattaaa gataagttaa aaaaagaaga actcctatct
     4861 ttatatgcaa ataaaatcga agatattttt gcaacttttt atagacaaat taattttact
     4921 tgttttgaaa gacgcttaca tgctcaagaa aatgaactta gcaccgaaga aatcaataaa
     4981 atttggatgg aagaatctca aaagatgttt caagacagcg taaaacttac aaaaaattat
     5041 gcttcttggt ggagttatat tcctcatttt atccattctc ctttttactg ctatgcttat
     5101 gcttatgcac aacttttagt tttagctctt tatggacttt acaaaagtaa aaaatgtgaa
     5161 aattttaaag aactttatat caaaatgctt tctttaggtg gaagcgtgag tccaaaagaa
     5221 ctagtaggaa tgtttggctt tgatatagaa gatgaaaatt tttgggaaat aggcataaaa
     5281 gaaattcaaa aactcatcaa tgaatttatg gagttacaat catgctagaa acaatcttaa
     5341 aaaatgaaaa ttttatccat accatgcaaa agcattgtta tgaagttatt tcacacctta
     5401 tagaagaaaa tatagaattt tccatagttg caaatacaaa tttcatagat tttaaccctg
     5461 aacttcccaa agagcttgat gttaaacaaa atccttatgc tctttttgct cttggaggat
     5521 acacctttga atccatacaa ctaaataaag atttcattca atttcacgca ggttttggaa
     5581 atgatgattt tgatagtttt gtaaaggttg atttaggagc tatcacgcaa attcaaatag
     5641 aaaataacat tttatttgtt aattttagcc tttataaacg cgaagatagt aaaaatttac
     5701 aaaaatctaa aaatatattt ttaaataatc caaaaaataa agatattttc aaaaaatgaa
     5761 tctatttgaa gatttaaatg atagtcaaaa acaggcagta agccacattg atggagctat
     5821 gcttatccta gcgggtgcag gtagtggaaa aaccaaaact attaccactc gtcttgctta
     5881 tcttatcggt gaagtaggca tcccctcgca taacactctt actcttactt ttacaaataa
     5941 agcagctagt gttatgcgtc atagagcatt aaattttcta caaggcaatc acaatccctt
     6001 gctttgcacc tttcataaat ttggactttt atttttaaaa ctccattttg aaagattgga
     6061 gcgtaaaaat agttttattg ttatcgatac agatgataca aaaaaaataa ttaaagactt
     6121 aatccatgat aaaaacaaag ataatgtcta tgatattatc aaatacatat cttattgcaa
     6181 aaatgaaggc aaaagagtaa gcaatgtctt tgaagattta aatttactaa aagaacataa
     6241 ttttgaaaaa tatcaaaatg aatacaaatt tgccaactat taccgtgctt atgaagaata
     6301 cttattaaag caaaattttg tagattttga tgatctttta ttgctaagca atctcatttt
     6361 agaaaatgat ataaattttg ccaaagaaca aagcttactt tataattaca ttacagttga
     6421 tgagtatcaa gatactaata ccttgcaata taaaattcta aaaaatctat gttgtatgca
     6481 tgaaaatatc acagttgttg gtgatgatga tcaaagtatt tatagttggc gtggagcaaa
     6541 aattgaaaat attttaaatt ttcaaaacga ttttaaaaat gttaaacttg taaaacttga
     6601 acaaaactat cgttcagtag ggactatttt acaagcagca aataatctca tatctcacaa
     6661 tgagcaacga cttggaaaaa ctttaatctg cactaaagat actggggaaa atattaaaat
     6721 attaaaaaac gaaaacgaaa aagatgaagg tttatatatc gctcaagaag tgaaaaaatt
     6781 gctaaattct ggagtagaag ctaaagagat cgccgtttta tttcgagtta atgcactatc
     6841 aagagcaata gaagaagcat ttatgaagga aaaaatttct tataaactgc ttagcggtat
     6901 gcgtttttat gagagattag aaataaaaga tttaatctcg tatcttagac ttatcttaaa
     6961 tccaaatgat gatttgtcgt ttaggcgtat tattaatcgc cctaaaagat ccataggaga
     7021 aaaagcccta aaaaatttag aagaatatgc aaaaaaacgt caaatttcac tttttgatgc
     7081 cttatgtgaa agcgatggcg gtgtaggaat tttaacaaca aaaaaagcac aaaatgaagc
     7141 aaatattttt atacaaaata ttcacactct aaaaagctac gataatgcaa aaaaagtttt
     7201 tgacaatata gaagaattat ttaaaatcaa agattatttt tcagagcaag atgatggaga
     7261 tgaaagaatc agaaatcttg atgagtttta tgctaatcta agagaaaaac tcaaagaaga
     7321 tcccgaagct tctttagaag atctacttag tgaaatttct ttattaagtg atcaagataa
     7381 tttagatgaa gaatgtgttt gcttgatgag tattcatgct agcaaaggtt tggaatttga
     7441 ttatgttttt ataataggct ttgatgaagg attttttcct ttaaatagcg aagaaaatct
     7501 cgaagaagaa cgccgtcttg cttatgttgc catcactcgc gccaagaaat ttctcacaat
     7561 aagtgttgca aattctcgtt tttatcatgg ttcaagagca aatatcaatc ctagtcgctt
     7621 cttagaagaa agtaaattaa tcaatgaaaa atcaaaaaat caaaatatac aaaaaactag
     7681 tttttgcaaa ggagatctag ttaaacataa aatttttggc attggcaggg ttgttgaagt
     7741 taataaaagc ggaaaagagg aaaagcttaa tattaatttt ggtggtataa tgcgtgtaat
     7801 catggcaagc tttgtggaaa aagcagtatg aataagatct ttgcagcctt taaaccaaga
     7861 ggtttgagtt ctaatgcctt tttaagtact ttaaagaaaa aatataaaaa taaaaaagca
     7921 ggatattctg gcactcttga tcctttcgcc aaaggggttt taatcgttgc gtttggacaa
     7981 tacacaaaac ttttccgatt tttaaaaaaa actccaaaaa cctataaagc tactttatgg
     8041 cttggagttt actccttaag tcttgatgat caaaatataa aagaaattaa aaatataaaa
     8101 gaatttgatc ttgcaaattt acaacaaatc attgatcaaa tgcaaggaat tatctcctat
     8161 acaccgccgc aatttagcgc caaaagaatc aatggaactc gcgcctatga acttgcaaaa
     8221 aaaggtatag aagcaaattt aaaaccttgc caaatggaag tatttgattg caagatttta
     8281 agctataatc atcctttttt aaatatcgaa atcacagtca gtgaaggtgc ttatataaga
     8341 tcttattgcg aactttttgc tagaaaacta ggtattaatg cgactttaag ctctttagag
     8401 cgcattaaag aaggcaaatt tgtttataat aatgagaaaa gcttaaatgt gttaaaatac
     8461 attaacctaa agccaaattt tatcaaggat ttaaataaac tcgaaaatgg tgctaaaatt
     8521 tttgtcgaag aattaaaatt tcatgatgaa ggagattatt atattgaaac agaaaaatat
     8581 tttagcataa ttaatattaa agaaaataca gtaaaatatc ttctaaataa ggttgaaaaa
     8641 tgttaatatt atcaagaaaa gaaaatgaaa gtataattat cggagaaggt atagaaatca
     8701 aagtcgttca aacagggaaa ggatatgcca aaataggcat agaagctcca aaatccctta
     8761 tgatacttag aaaagaactt gttcaacaag taaaggatga aaatttgcat tctgttgttc
     8821 agaatgatat taaacttgat gacttaagca aaaaactaat caaatgaaag cttacgctaa
     8881 agcaaatatt tttttaaaac ttaccggttt tgactcaaga aaatatcatc ttttagaatc
     8941 acgatttata cttttaaaag atctttttga tgagcttgag cttgttgata aagaatcaga
     9001 ctctaaaaaa gaatttgaaa tcattagtaa ttttaaatgc gaaaataata ttattcaaaa
     9061 ggcttactta ctactttcta aaagatataa caacgaatta aaagaattat ttagcaaaaa
     9121 aagcctaaaa ctcacaaaaa atatcccagt atgtgctgga cttggcggtg gaagtagcga
     9181 ttgtgcgagt tttttactac taatgaatga aaccctaaat ttaaaattaa acctacaaga
     9241 acttataaat ttaagcatac aactaggaag cgatattgcc ttttttttaa gtggctttca
     9301 ctctgctaat gtaagtggct gtggcgaaat tatagaagaa tttgaagatg acatacctaa
     9361 tttaaaatgg acttttccac aaatatcttg ccaaactaaa gctgtttatg atgaatttga
     9421 tagaggaata tttgactttc aaaaaaacaa taatcaagcg caaatctaca aaaaactcag
     9481 cacaaaagag ttgttacaaa attttaaaaa caaagaatta aatgatttat ttactccttg
     9541 tgcaacttta tatcctaaaa tgaagtctta cttacaagaa gatttttttc taagcggtag
     9601 cggtagtagt gtttttaagg ttgatcgatg aaaattattg cgagaaataa aaaagcttta
     9661 tttgattata gcatcataga acgctttgaa gccggaattg tccttaaagg aagtgaagtt
     9721 gtagccttaa gagcaggaag agcaaatctt aaagactctt ttgttcgcat tataaaaaat
     9781 gagatttttt tacttaattc tcatatttca ttgcttcata ctacacattc tttctataaa
     9841 cacgaagaaa gaggtgctag aaagctttta atgcatagaa agcaaattga taaattatta
     9901 ggtaaagtaa gtatagaagg atatactatt gttgcattag atctttattt taacacaaaa
     9961 aataaagtaa aagccactct tgctttagct aaagggaaaa atttgcacga caagcgtgaa
    10021 actttaaaga aaaagcaagc cgatttagaa gctagagctg ctatgaaaaa ttataaataa
    10081 aggaaattaa atgaaaaaaa ttttaaccct atttttaata agtttagcat tttttcttaa
    10141 tgcttgctcc aaagaagaag aaattcaaaa tgattttatg tttgaagagt atcacaaagg
    10201 agataaaata gtattaaata gtgtaaatgg tggaagcaaa actttaataa gaacagataa
    10261 aggttttgtg gtagaaggag aggaaggaaa agttctaatg tttgattttt ttggcacttt
    10321 ttgcacccca tgcaaagaag aagctttaga tcttagcaaa ctttggaaaa ataattctag
    10381 caaatttatc attataggac ttacacattt tgaagatgtt agcgatgaaa cagttaaaaa
    10441 attcgcggat gattatggtg cttactattt tctaagcaat ggcggttcta atgatcgtat
    10501 tattgctcaa attttaaaag atatagacta tcaaaatatg gagcaacttc cttttaaagt
    10561 tgttttaaaa aatggaattt atcaaaaaat aagcgattac tggaataata atgctccaac
    10621 aaatttttat cttggcaaaa ttccaacaga actcatgcaa gaagatttaa ataaaatcta
    10681 caaaggaaaa taatgccaaa aacccaaact ctagagcaga caaaacttag tgaaccaaaa
    10741 atgtataaag ttatactctt aaatgatgat gtaacaacca tggattttgt tatagaaatt
    10801 ttgatgaata tttttcatca aaaccttgaa aaagcaagtc aaacaatgtt agaaattcat
    10861 cacaacggtt ctggaatttg tggcatttac actcaagaaa tagctctttc aaaacaaaaa
    10921 aaagttatag atgcggctaa acttgctaat tttccactac aagcaaaggt agaagaagaa
    10981 tgaaatacca agaaaattta caaaaatatc ttgataatgc caaaaatcta agcttaataa
    11041 accaccatga atttgttacc tgtgagcatg tactgtttgc attactaaaa ctaagcattg
    11101 attttaagga tatatttgaa gaattttcag atggagatct tgaacttcta gaaactgaat
    11161 taaaaaatta catttctcaa aacaatcaag ttattaaaca agaaatagaa cctacaatat
    11221 ctgttgtttt agatgaaatc ttactttcat ctaaaaataa aaataatgaa attaaaatta
    11281 tagatttttt agaaaagctc atacaggatt caagaagtta ttctagctat ctcttaaaaa
    11341 aacacaacat aaatcttacc aaaattcaag aacttcaaaa tcatgaaaat atacaaaatt
    11401 taagcaacca cacaagtaat ttaacacttt tggctcaaaa tggcaagatt gatcctttaa
    11461 taggaagaaa atttgaactt gaaagaatga tgcaaattct ttcacgtcgc aagaaaaata
    11521 atcctatttt agtaggagaa gcaggagttg gcaaaacggc cattgtagaa ggattagcat
    11581 tggctattgc ggaaaaaaag gtgcctaaaa acttacaaaa tgcaaaaatt tttagtcttg
    11641 atatggctag tatacttgcg ggaacaaaat accgtggaga ttttgagaaa agaattaaag
    11701 aaattttaaa tgaacttgag aaaataccca atgctatttt atttattgat gaaattcaca
    11761 ctatagtagg agctggaagc acaggagaat ctcatactga tttttccaat cttttaaaac
    11821 cagctctaag taatggaact ttaaaatgca taggtgcaac aacttttatg gaatataaaa
    11881 atacttttga taaaaataaa cctctaagtc gccgttttgc taaaataaat gtagatgaac
    11941 caagccaaga agaaagtttg caaattctta aaggattaaa aaacaaatat gaagaatttc
    12001 atcatataaa attaaacgat gaaattcttc aatatgctgt aatttggggt aaaaaatttt
    12061 ttaatgataa atttttacct gattgcgcta tagatctgat cgatgaactt ggcgcttctt
    12121 ttgctttaaa tccaaaagct aaaaaaaatg caaatttaaa agatttagaa aatgttttag
    12181 caaaaatgac ccaccatcac aaaatgtttg aattcgatca aaataaagct ttaatgaatt
    12241 taaaaacaaa tttaaaagca aaaatttttg gccaagatga agttatagat agccttgttt
    12301 catcacttaa gcaaagtttc gcaggattta aaaattccaa tacaccacgc ggagtgtttt
    12361 tgtttactgg atcaagtgga gttggaaaaa cagaattttg caaagcttta gctgaatttt
    12421 taggtttaaa tttagagcgc tttgatatga gcgaatatgc agaaaaacat gctataagta
    12481 aactaatagg atctccagct ggatatatag gttttgaaga gggtggactt ttaagcaatg
    12541 ctattcgcaa aaatcctttc agtcttgttc tttttgatga aatagaaaag gctcatcctg
    12601 atttaagcaa taccttttta cagatttttg acaatgctga actcaccgac aatagcggtc
    12661 ttaaagtaga ttttaaaaat acaatcatta ttatgacatc taatctagga cttaaagaaa
    12721 gcaatgagct tggtttttta agtaaaaatg aagaaaaaag taatcgtgct atcaaagatt
    12781 tttttgctcc agaatttatt aatcgcattg ataaaatttt acattttaat gatttaaacg
    12841 atgctatact tgttaaaatt atcgaaaaag aacttgatga aatttctaaa aatttaaata
    12901 atataaaatt atcagtggat gataaagtca aaatttattt agctaaaaaa gcctataata
    12961 aagaatttgg agtaaggctt ttaaaacgca taatttctga ggaaatagga gaaaaaatca
    13021 gtgatgaaat tttattcggg aagcttaaaa aaggcggtat agctaaaatc aaacttggta
    13081 aaaatggaaa gctcgaattt atattctaaa ttactcaatg cacctaaaaa tgctcctgta
    13141 tttttaagtc aaaatttaga agctgatttt attgtaaaag cttatacttt tggtctattc
    13201 ccatggacaa gtaaacctgt aacttggtgg tgtccagatc ctagatgcat tttaattcca
    13261 aatcaaattc acatccaaaa aaatatgaaa aaatttatta atctctatca aattaaactt
    13321 gattatgatt ttttaaaatt aattacatta tgtcgcgata cacgctctca aagctggata
    13381 gatgatgaat ttattaccac ttattataag ttatttaccc aaggctatgc gcatagcctt
    13441 gaactttatg aaaataatga acttataggt ggaatttatg gtttaatttt aggcaaggtt
    13501 ttctttggtg aaagcatggt aagcattaaa aaaaatgcat ctaaagttgc catgattaaa
    13561 ctttgtgatt tattaaaacc ttatgatttt atcatagatt gtcaagttta taaccaacat
    13621 ttagaattta tgggtgctca taatatttct aggaaagaat ttttaaatat tttaaaagaa
    13681 aaatgcaatc aagaaagtgg ttttaaaaat tttaaagatt taattactta aaaaataagc
    13741 gtgaaaatca cgcttatgac attgctttag caacttcagc agagctttca cgaattttct
    13801 ccatacattc tcttgcttct tttgcaagtt caacactctg attaacatcc tctaaaccgc
    13861 ttttaatact ctcaaccact tgtgatgtaa cattacgaat agaattaatc gtagtggtaa
    13921 tttcattaac tgaatgccct gttctttcag ctaaatttct tacttcatca gcaacaacag
    13981 caaaacctct accatgttca ccagcacgtg ctgcctcaat agcagcattt aaagcaagca
    14041 gattagtctg atcagcaata tcactaatag tctgaataat agatttaatt tcatctgatt
    14101 gttgatttaa tgaggaaaca agatttgaac tttgagacat catatcagca atattctgaa
    14161 catttgaaac agtgttttca attacacgat ctccatcttg agtaagatta tcattttttt
    14221 ctgcaagttc gcttatgagg cgaagttttt cttgatcttt tttaacttgt tcgcttatat
    14281 ctgtagcaaa tttaataacc ttgtaaattt ttccatcatc atttttaacc ggattataac
    14341 ttgcttcaag gtatactttt ttattatttc ttccgtatct tatatattta cctgattgaa
    14401 atttgccctc tcttaaatct tcccaaaatt gaacatagtc cttagagtgt ctataattag
    14461 aatcacagaa catactatga tgctttcctt taatctcatc aatattaaaa tccatagttc
    14521 ttaaaaaatt ttcattagcc gtaataatag tcccatcagg tttaaattca ataatagcca
    14581 tagaacgatt agcagcagca atagtatttc taagatcaag catttcataa tgtctttgag
    14641 ttatatcatt ggcaaattta ataattttat aaacatgacc attattatca ctaattggaa
    14701 gataatttgc ttctaaataa acatctatcc ctcccttagc tatacgtcta aaaagaccac
    14761 ttctggcttt tccatctctt aaatctttcc aaaaatcact atatgccgaa gaattaacaa
    14821 cttcaggcaa acaaaacata ctatgatgct tgcccttgat ctctgaaagg gagtatttca
    14881 tagttgttaa aaaattttga tttgcctcta aaataacgcc atcggtggta aattcaatta
    14941 ccgccatggt attcccaata gatcttaaaa tatctcctaa accattacac tttttttcaa
    15001 gttgttcaat tatttcagta ttatttttct tagcaccaaa cataaaactc acctttttaa
    15061 taataaatta ttttaaaatt atatcatatt tatatagtat tatttactta aaattatatt
    15121 aatttataag ttaaatatat cctttaaacc tacaataatc atcttaaacc ccatagcagc
    15181 aataaatact tgtgctatac gagaaaaaac atgtaaaatc aattttccaa ctattttttc
    15241 tatagtagct gcaaaatgaa aaagtataaa cataaaaata aaagctatca ttactccgcc
    15301 aagagcaaca tcaagcccac catcttcggc tataacgata acactagcta aagttccagg
    15361 cccaacaagc ataggaaatg ccataggtat taaactctgt cttaaaattt ccttatcatc
    15421 catatcctga taagaactaa aatccttagt tgcaattttt gttgaaaaaa gtaaattttt
    15481 aatagccatt ataataagaa ccaaaccacc agaaaccctt aaatcatcta atgaaaccct
    15541 aaaaatatag ttcataaaca aaggtcctga taataaaaat accaaaacta tagtaaaagc
    15601 tgtatagaga atagttctaa aaagtttttt tcgaagcatt aaaggcaatc catcactcat
    15661 agccaaaaat tgagttaaat taccaaaagg atttaatatg gcaagtaaag taattgcagc
    15721 aaaaaacatc aaataaagct cagaacccat actagaaaac actatcaatc cttagttttt
    15781 acaaattcca aagaaataga atttacacaa tgtcttacat ttttagcaga aaatccttct
    15841 ccttcaaaaa catgacctaa atgtccattg cagtttgcac atacaatctc ggttctaatc
    15901 ccatctttat caggaattct tttaacagcc ccttttattt catcatcaaa gctaggccac
    15961 ccacaacctg atttaaattt atcttcggat ttataaagcg aagctccaca ttgcttgcat
    16021 tgatagattc ctttttcata aaaatcatta tatttcccac taaaaggagc ttctgttcct
    16081 ttatttaaaa ttactttttt ttcttcttca t
//
LOCUS       DAEBKH010000022        15433 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.022, whole genome shotgun sequence.
ACCESSION   DAEBKH010000022 DAEBKH010000000
VERSION     DAEBKH010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15433
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.022"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            156..1562
                     /gene="aspA"
                     /locus_tag="KIL20_000497"
     CDS             156..1562
                     /gene="aspA"
                     /locus_tag="KIL20_000497"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HBD2720551.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVAAYSLFNSIVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
     gene            1579..2916
                     /locus_tag="KIL20_000498"
     CDS             1579..2916
                     /locus_tag="KIL20_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HBD2720552.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFIACMLTAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     ILHGEDKPGAKLSVGIFLITVLAVVLYATAISSNIKWIDPVVVPRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVALGFVLAPMLI"
     gene            3024..4385
                     /locus_tag="KIL20_000499"
     CDS             3024..4385
                     /locus_tag="KIL20_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3014 family protein"
                     /protein_id="HBD2720553.1"
                     /translation="MKIKVGLIFSGIVCLFLTACVNQVKQNTTFENALTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAAEESYKYDVDLENVGSKAA
                     KFVGTTLLNDTIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRALMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLLREVAIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVVVRSFAPYLPASVAI
                     MEK"
     gene            4395..4763
                     /locus_tag="KIL20_000500"
     CDS             4395..4763
                     /locus_tag="KIL20_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HBD2720554.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDLIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLASDTRAKDFRLEIKAKN"
     gene            4787..5410
                     /gene="lpoB"
                     /locus_tag="KIL20_000501"
     CDS             4787..5410
                     /gene="lpoB"
                     /locus_tag="KIL20_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HBD2720555.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQVKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5492..6829
                     /locus_tag="KIL20_000502"
     CDS             5492..6829
                     /locus_tag="KIL20_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720556.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINTQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNITNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLANTNEALNSKSNTTKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6839..8041
                     /locus_tag="KIL20_000503"
     CDS             6839..8041
                     /locus_tag="KIL20_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720557.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDANGKYTANVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDSSGYYEMEKALIKSGDAASDEVYKLKNVLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANEAALK
                     QIANRIAGDILNAIYPLKVASVENNEVVFSQSLNQGDVYECFALGKAIKDTYTKENIG
                     RVENKTGSIEITRTSPKLSYAKITEGGVKVGDICRPLIGSNSGNGYTIGRDANYQTEE
                     GGGVNLGF"
     gene            8200..8508
                     /gene="rplU"
                     /locus_tag="KIL20_000504"
     CDS             8200..8508
                     /gene="rplU"
                     /locus_tag="KIL20_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HBD2720558.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8519..8773
                     /gene="rpmA"
                     /locus_tag="KIL20_000505"
     CDS             8519..8773
                     /gene="rpmA"
                     /locus_tag="KIL20_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HBD2720559.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8882..9919
                     /gene="obgE"
                     /locus_tag="KIL20_000506"
     CDS             8882..9919
                     /gene="obgE"
                     /locus_tag="KIL20_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HBD2720560.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDAQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVDEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVNLGEEFAEQITLNINELENYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNK"
     gene            10042..10797
                     /gene="proB"
                     /locus_tag="KIL20_000507"
     CDS             10042..10797
                     /gene="proB"
                     /locus_tag="KIL20_000507"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HBD2720561.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            10871..11788
                     /locus_tag="KIL20_000508"
     CDS             10871..11788
                     /locus_tag="KIL20_000508"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HBD2720562.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDENIIREIKDLNPDFIVVAAYGKILPKAILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAVLESLECDIKDK
                     NSSEVFELLANLAAKLILSTLLNFDKIIPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNARMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            11751..12404
                     /locus_tag="KIL20_000509"
     CDS             11751..12404
                     /locus_tag="KIL20_000509"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HBD2720563.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCEQIRNGKIDGNFAIYALEQTN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKELLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFSPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            12401..13186
                     /locus_tag="KIL20_000510"
     CDS             12401..13186
                     /locus_tag="KIL20_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HBD2720564.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            13192..14028
                     /locus_tag="KIL20_000511"
     CDS             13192..14028
                     /locus_tag="KIL20_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HBD2720565.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KL"
     gene            14089..14514
                     /locus_tag="KIL20_000512"
     CDS             14089..14514
                     /locus_tag="KIL20_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HBD2720566.1"
                     /translation="MFEDMHPSIMLATMAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLGVNDELEAIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAVQKKELQEHLNIHLPELKQALQNNIKKI"
     gene            14525..15037
                     /locus_tag="KIL20_000513"
     CDS             14525..15037
                     /locus_tag="KIL20_000513"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HBD2720567.1"
                     /translation="MSKLFFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVAILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVQNIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            15040..>15433
                     /locus_tag="KIL20_000514"
     CDS             15040..>15433
                     /locus_tag="KIL20_000514"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HBD2720568.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKNIIES
                     NEIKKERKMEFFDSFFDIKNSSFQNFLRLLIENSRLEYIPQIVKELERQKAFKENIFV
                     GIVYSKEKLSQENLKDLEVKLNKKFDANI"
BASE COUNT         5734 a         1964 c         2797 g         4938 t
ORIGIN      
        1 aaagacataa taggatataa aaatacttaa tttatcgtat ttgaaagtag ttttattgtt
       61 aaccaattat taactaaaaa tgcaatatca ttattttatg atttaaatca aaaatttttg
      121 attttaaatt aaaatacttt tatgaaaggt tcaaaatggg aacaagaaaa gaacatgatt
      181 ttattgggga attagaaatc tctgatgagg tttattatgg agtgcaaact tttagagctg
      241 ttgaaaattt tgatatttct catgatagat taaaagattt tcctcgcttt gttagagctt
      301 tggctagagt aaaaaaagct gcagctatgg caaatcatga attaggtctt ttagataaaa
      361 atatccaaga tgcgattatt aaagcgtgcg ataaaatttt agaaggcggg tattatgatc
      421 aatttgtagt agatatgatc caaggaggtg ctggaacaag tacaaatatg aatgctaatg
      481 aagttatagc gaacatagga cttgaactta tgggtcataa aaaaggtgaa taccaatatc
      541 ttcatccaaa tgatcatgtt aatttaagtc aaagtactaa tgatgcttat cctacagctt
      601 tacaccttgc cttgcatgat tatttaagtg atttggcaaa agctatggaa catctaaaaa
      661 aagcttatga gagaaaagct gaagaattta aagatgttct taaaatgggt agaacccaac
      721 tgcaagatgc tgtacctatg actttaggtc gtgaatttaa aacttttgct gtaatgatag
      781 gcgaagatat acaaagagta ttagaagcta gaaaattaat tttagagatc aatttgggtg
      841 gaactgctat tggaacggga attaattctc atcctgatta tccgaaggtt gtagaaagaa
      901 aaataagaga agtgacaggt tttgaatata ctgtggctga ggatttgatc gaggcgactc
      961 aagatacggg agcttatgta caaatttcag gtgttttaaa acgtgttgca acaaaacttt
     1021 ctaaagtatg taatgactta agacttttaa gcagtggtcc aaaatgtggt cttaatgaga
     1081 ttaatcttcc aaaaatgcaa ccaggtagtt ctattatgcc aggtaaggta aatcctgtta
     1141 ttcctgaagt agttaatcaa gtttgttatt ttgttattgg agcagatgta actgtaactt
     1201 ttgcttgtga gggtggacaa ttacaactta atgtttttga accagttgca gcgtatagct
     1261 tatttaattc tattgtaatg ctagaaaaag caatgtatac tttagctgat aaatgtatag
     1321 atggtattac tgcaaatgaa aaaatttgtt cagacttcgt ctataattca gtaggtatag
     1381 taacagcttt aaatccttat attggttatg aaaattcagc ttctatagct aaagaggcaa
     1441 tgaatactgg aaaaagagtg gctgatattg cgcttgaaag agggctttta agtaaagaac
     1501 aaattgatga aattttaact ccatcaaata tgctaaatcc tcacatggaa gctaaaaaat
     1561 agcattttag gatttaatat ggatataatg ataattttgc aagtaatcgt ccttcttggg
     1621 gcgattttta tcggtattcg cctaggcggt attgctatag gttatgctgg aggattaggt
     1681 gtagttatac taggacttgt tttaggtatg aaacctggta atattccttg ggatgttatt
     1741 ttaattattg ctgcagctat tgcagcaatt tctgctatgc aacaagcagg tggacttgat
     1801 tatatggtaa gggtgacaga aaaaatttta agatcaagcc ctaaatttat aaattattta
     1861 gctccagctt gtggatggtt gcttacaatc ttagcaggaa caggaaatgc agtattttct
     1921 ttaatgcctg ttgtagttga tgttgcaaaa tctcaaaata taaaacctag tgttccactt
     1981 tcattaatgg ttgtttcttc gcaaattgga atcactgctt ctcctgtgag tgcagctgtg
     2041 gtttatatga gtggcgtttt agagccactt ggatggaatt atccaacttt aattggaatt
     2101 tggatcagta caacttttat agcttgtatg cttacagctt ttatagtgag tttaatcact
     2161 cctatggatt taagcaaaga tagcgtttat caagaacgct taaaagcagg acttgttaaa
     2221 gatgcaggag ctattttaca tggtgaagat aaaccaggtg ctaaactttc agtaggaatt
     2281 ttcttgatca ctgttttggc agttgtactt tatgcaaccg caatttcaag caatattaaa
     2341 tggattgatc ctgttgtggt tccaagagat gcagctatta tgagcttttt acttactgca
     2401 gcaactttga tcacttggct ttgtaaagtt gaaccaggta aaattcttga taccagcgta
     2461 tttaaaagtg gtatgactgc ttgtgtttgt gtttttggtg tagcatggct tggaaatact
     2521 tttgttgcag gacacgaagc ttctattaaa gaagtagcag gcgactgggt taaacaaacc
     2581 cctgctatgt tagcagttgc atttttcttt gcaagcatgc ttttatattc tcaagcagca
     2641 accgcaaagg ccattgtacc tgtaattatc actgctttag gaatttcagc agcaaatccg
     2701 catgattctt atatgcttgt agcttgtttt gcagcagttt cggcactttt tgtgcttcca
     2761 acttatccaa ccttactcgg tgctgtgcaa atggatgata caggaacgac tagaattggt
     2821 aaatttatat ttaatcactc tttctttata ccaggagttt tagctattgc aattgctgta
     2881 gcattaggct ttgtattagc tcctatgctt atttaaatca aaccctaggt ttttctctcc
     2941 tagggttaaa attttttcat tagtttttaa gtatatacta cgctataata ttcattttta
     3001 attttcttta agaaaggaat ttaatgaaga taaaagttgg gttgattttt tcaggtattg
     3061 tttgcctttt tttaacagct tgtgttaatc aggttaaaca aaatacaaca tttgaaaatg
     3121 ctttaacaca aaaatattgt ggtgatgatt ttttcaatca aaatttagaa aaaattaaaa
     3181 aaaatgatga tgtcatttat acaggattaa atgcaggttt gattgctaga aattgtggtg
     3241 attttaacaa aagtaatgta ttttttgatg ctgcggaaga atcttataaa tatgatgtgg
     3301 atttagaaaa tgtaggctct aaagcagcta aatttgttgg tacaaccttg cttaatgata
     3361 ctatagttga ttatgatggt tctttatatg aaagaattat ggttaatata tataaagctc
     3421 taaactatat ggaagaagat gattatgaaa atgcaagagt tgagtttaat cgtgctttaa
     3481 tgcgtcaaga taaggcaaaa gaatattttg ctaaagaaat tgagaaaaat cgtgctgatt
     3541 tagataaggc aaaagaagat aaaaattatg ataaaaatat gaatgaaaac tcaaaagtta
     3601 tagaagcaca atacgataac ttgtttaaag agtttgatac aacaaaaaat ttcataaatc
     3661 cttatgcgac ttatcttgct tcaatatttt tctttatgga taaagattat agaaaagctg
     3721 cagatttatt gagagaagta gctattattt atccaaaaaa taaaactatc aaaaaagagg
     3781 ctaaaatttt taaagaatat gccacaaaaa taaaagtcaa aaaagctaaa aaatatgttt
     3841 ttgtagttta tgaaaatgga tttggtgtag ttaaggatga atttgcttta accttacctt
     3901 ttatagtgga taaaaaaatt attagcacaa atattgcttt acaaaccttg aaaaaaaggg
     3961 aagcttcttt tgcaaattta aatataaatg gtcaaaatac aaatgatttt gtagatttag
     4021 acaatattgt tgctactgaa tttaaaataa atatgcctgc aatgattgct aaagccttag
     4081 ctcaaactat aattaaaacc actttaaatg tagctgttgc aaataatgac tctacaggtg
     4141 gatggctaag tcttgcaaca gcagtagcaa ctgctgcaac caacaaagct gatgtgcgtt
     4201 cttggagagg tttgccaaaa agtattgcca tagcaacaat agaaaacgac ggaaatttag
     4261 aaatcaaaga tccacaaggc aatattttgt ttcaaaaatc attggataaa aataaaaatg
     4321 ctcttgttgt agtgcgttct tttgctccgt atttacctgc aagtgttgct atcatggaaa
     4381 aataaggcta aaagatgaaa aaaaatattt tatttatttt aatgttttta cttagtgctt
     4441 gtgcgccaag ttatcaaata aattcaaatc aaaatactgt aattttaggt tcaaatttac
     4501 caaaaagttt agtaaaacag tttcaaaagc gtataaatag caatggttat ttagaatttg
     4561 aagtgatttt acgcagtact tttgctaaag atttaattta taaagtggat tggttagata
     4621 aagatggttt tgtgctaaga gatgttttaa atgaggacta tcaagccctt agaattccag
     4681 caggacaaga ggtgattctt cgtaaacttg catctgatac aagagcgaag gattttagat
     4741 tagaaattaa agcaaaaaat taatctcatt ttaggaagga taaatcatga aaaaaacaaa
     4801 aattttagga acagctctta ttggagcttt gctttttagt ggttgtgcgc aaacagctta
     4861 tacagatgga aaggcaagtc aagtgaaaaa aggcgatgct ttaaccttgg gtcttgatag
     4921 acaagatttt gaaagtgcag ctgaaactat gataaatagt atgttaagcg atcctgcttt
     4981 tgcaaatatt aaaccaggta caagaaaggt tattgctatt ggtagggttg tgaatgatac
     5041 cccgcaaaga atcgatactg aaaaacttac cgcaaaaatc acttctgcat taagaaaatc
     5101 aggtaaattt gttctaactt cagcagttgc tgcaggcgga gcacttgata gcatgagtga
     5161 agatgtaaga gaattaagag ataatgatga gtttaatcaa aaaaccatag caaaaaaagg
     5221 gacattggta tcgcctgatt tttctcttgc gggtaaaatt agacaagata atgtaaaact
     5281 tagcaatggt aaaactcaag tagaatactt tttcttgtta agacttactg atctaacatc
     5341 aggtttagtt tattgggaag atgagcaaac tattgataaa accggttcta gtaaatcagt
     5401 tacttggtaa aataaaaatt aatttatgaa taaaattttt agctcaagtg tttagcttga
     5461 gcttttttta tgatttttaa aaggatatga aatgaaaaaa atattattta tcggctcttt
     5521 agttatggca agtttacttt atgcacaagg ttcccagcct gtagaaatta cacaacaaga
     5581 tataaatact caaaatgaaa tgtctgatgc aagcactaag gatattaccc caaaatcaat
     5641 tgaagatttt tttgaagaat ttgcggataa tttcggtata gaatatggta taaccaaaga
     5701 tggaaaaact ttttatacag gaaaaagtac tgttgctgta aatgatactg atccacaatt
     5761 tgcacaagct ttacaaaatg cttatcaaaa agcaatgtta aatttacaaa gcgaatttat
     5821 aagagatgct tttggaagaa ttgctacaag caagattcaa aattatgaag cagataattc
     5881 tactaatgct aaggaatttg atgaattgcc aaaaggtgat aaggttgatc aaattttaaa
     5941 taaacttaca caattagctg gtgctcagct tgataaggca ttaaaagatt taggtataga
     6001 tacaaattct ttaagcgaag acagaaaaaa gactttatta aagcaagaat ttcttaataa
     6061 aaccatgaca aatgccatag gttctatgag tggacttgtt cctgtgcaaa ctatagttac
     6121 acaaagaaga ggtgagtatg atgtaggtgt tattgctgtt atttccaata aaactcgcca
     6181 attagcaaaa gatatggcac tagcaagaca gagtgctatt aagggtaaag gcaaggcaat
     6241 aagtgagtat ctgccaaaag atacaaaagg ctttttaaat gaatatggaa ttcgcttagt
     6301 ttatgatgaa aatggtgcgc ctattatttt aagttatgga aactggggtt atgtagcaga
     6361 tcctagcaat gctaaaaaaa caaatatttt agaagataga gccaaagaaa cagcacttac
     6421 tatggctgat gctgctatta tagagtttat taatacaaat ttaagtctta aagatgaaag
     6481 aacaactggt gatacttacg aggaaatcat caaacaaagt attaatgtta atgatagttc
     6541 cactcaagaa caaactcaaa acataacaaa tattattgat aaagtaaata gtaaaataaa
     6601 agcaagcgca agcggtaaaa ttcgtggtat tcgtactctt aaaaaatgga gttatacaag
     6661 tgaaaatggt attgaacatg taggagctgt gagattttat tcttatgaaa atttagctaa
     6721 cacaaatgag gctttaaatt caaagtcaaa tacaacaaaa aatgaagcta aaaaatcttc
     6781 tagcatacaa agaagctcta atgttgtaaa tagcatggat gatttttaaa ggtaaaagat
     6841 gaaaataatt aaaattcttt ttttaggctt atttttaagc ctaagtctta atgctaaagt
     6901 tataaccaca acttcaacaa aatcaagcac aggcgaaggc acaggcttga ctagggaaga
     6961 tgcgataaac aatgccatta tagaagctat aggaaaaatg agcggagtaa gcatcaattc
     7021 tcttaagaaa tctaacacta gtgtttcaac tgataattca ggttcaaaca tacaagataa
     7081 ttacagcgag caaatttcaa aagccaccaa aggtagagcc gatacttatg aaatcaatag
     7141 tgttgaacaa gatgcaaatg gtaaatatac agccaatgta acgattttta aaaccacaac
     7201 aacaaaaaag tatcaagctc caggtttaag tgcagataat agaagaagta ttactgtttt
     7261 tgattctact ccagatgctg caaaaagagg tataggctca gctttgcaac aaaaaatcat
     7321 ttccgattta ttgcaaagtc gtaaatttaa tgttttagac cgtgattcta gtggctatta
     7381 tgaaatggaa aaagctttaa tcaaaagtgg cgacgcagct agcgatgaag tttataaact
     7441 taaaaatgtg ttagcaacag attatatttt attgttttct atttcaggac ttgaaggtaa
     7501 acaaaaaaca agcaatttaa caggaaaaag caaaactgaa attgaagtta tcgtagatta
     7561 tcgtgtgctt ttatttgcta caagacaaat taaattttct aatactttaa gtatgaaagt
     7621 caatcttaaa gacaatagtc ttagtgccaa tgaagctgca ctcaaacaaa ttgcaaatcg
     7681 tattgcagga gatattttaa atgcaattta tcctttgaaa gttgcaagcg ttgaaaacaa
     7741 tgaagtagta ttttctcaaa gcttaaatca aggtgatgtt tatgaatgtt ttgctcttgg
     7801 caaggctata aaagatactt atacaaaaga aaatatagga agagtagaaa acaaaacagg
     7861 aagtattgaa atcactcgca caagccctaa actttcttat gcaaaaatca cagaaggtgg
     7921 tgtaaaagtg ggcgatattt gtagaccttt aattggtagc aatagtggaa atggctacac
     7981 tataggtcgt gatgcaaatt atcaaaccga agaaggtggc ggagtaaatc tgggatttta
     8041 aatttttaga gtttgatttt tctcaaactc taaatccttt cttaaattca tcaaaaatta
     8101 aagaaaaatt ttgtaaaatc gaaattttat taaaccacta aagcttttaa atccgttatt
     8161 gcggtgcttt atggtactac caatttataa ggaaaagcaa tgtatgctat tatcaaacac
     8221 agcggaaagc aatacaaagt aagtgttggc gatgagctaa aactagatca ctttgaagct
     8281 gaaagcaaag caagtattga agtaagcgaa gttcttgcta tcaatgataa agaattaaag
     8341 gtaggtgcgc ctttcgtagc aggtgcaaaa gttgttttgg aagtgatcaa tcacggaaaa
     8401 gataaaaaag ttgtgattta caaaaaaaga cgcagaaaag attctaaact caaacgcggt
     8461 tttagaagac aatttactcg cgttgtagta aaagatatca aagcttaagg agtaaagaat
     8521 ggcacacaag aaaggtcaag gttcaactca aaataaccgc gattctatag gtcgtcgttt
     8581 aggtgttaaa aaatttggtg gcgagtttgt tagagctgga aatatcatca tccgccaaag
     8641 aggaactgca actcatgcag gtaacaatgt aggtatgggg aaagatcata ctatctttgc
     8701 tttgattgat ggttttgtaa aattcgaaag aaaagataaa gatagaaaaa aagtttctgt
     8761 ataccctgca taagttttta ggacgctttt ttagcgtctt gaaaacttta aatttataaa
     8821 tttaacttct ttttatttgc tcaaatttag ctttataaat ttaaagtcaa aggcaattta
     8881 aatgtttatt gatagtgtta aaattacttt agcttcaggc gatggtggta aaggtgctgt
     8941 aagttttcgt cgtgaaaaac atgttccact tggtggccct gatgggggag atggtggaaa
     9001 tggtggcgat attattttcg tatgtgataa taatacccac actcttgtaa atttcaaagg
     9061 caaaagagaa ttacgcgcac aaaatggtgc tggtggaatg ggacgcaata aaaatggcaa
     9121 aaaaggtgaa aatttagaac ttatagtacc cgaaggaacg caagttatcg atgcacaaac
     9181 taatgaaatt ttactcgatc ttaccaaaga aggacaaaga gagctttttt taaaaggtgg
     9241 aaaaggcgga cttggcaaca ctcattttaa acacgccacc aatcaacgcc ccgattacgc
     9301 acaacctggt ataaaaggag aaagtcgctt agtcagactt gaacttaaac ttattgccga
     9361 tgtagggctt gtaggttttc caaatgtagg aaaatctact cttataagcg ttgtttcaaa
     9421 tgcaaaacct gaaattgcaa attatgaatt tactaccctt actccaaaac ttggactcgt
     9481 ggatgtagat gagtataatt cctttgttat ggctgatatt ccagggatta tcgaaggagc
     9541 aagtgggggt aaaggcttag gacttgcctt tttaaagcac atagaaagaa cgagcttttt
     9601 acttttcgtg ctagatccta tgaggcaaat gcctttaaaa gaacaattta tagtactaag
     9661 aaaagaactt gaaaaatttt ccaatgaact ttttgggcgt aaatttggta tcatgatttc
     9721 aaaaagtgat agtgttaatt taggagaaga atttgccgag caaattactt taaacattaa
     9781 tgagttagaa aattatctca aagaaataaa taacccacaa agctttttaa tcaaagtctc
     9841 aagccttgaa aaaacaggac ttaaagaact taaattcatg cttttagaag aaattaaaac
     9901 tttaagaaat aacaaataaa aattttaaca atctaggaag tgttttatat taaaaatttc
     9961 aaacactccc tattttttca aaaaataact agtttatatg aaattttggc taaaattata
    10021 aaaatttttt aaggaataag catgaaaaga atagttgtta aagtgggttc tcatgtgatt
    10081 agcgaagaaa acactttaag ttttgagcgt cttaaaaatt tagtcgcatt tttagctaaa
    10141 ctcatggaaa aatatgaagt gattttagta acttcagcgg ctatttcagc aggacacacc
    10201 aaactagata tcgatagaaa aaacctcatt aataaacaag ttttagccgc tattggacaa
    10261 ccttttttaa tcagtgttta taatgaactt ttagccaaat ttaacaaact aggcggacaa
    10321 attttactta caggtaagga ttttgactct agaaaagcta ctaaacacgc aaaaaatgct
    10381 atcgatatga tgataaattt aggaatttta cctatcatca atgaaaatga cgctacagct
    10441 atagaagaaa ttgtctttgg tgataatgat agcttaagtg cttatgctac gcattttttt
    10501 gatgcggatt tgcttgtgat tttaagcgat attgatggat tttatgataa aaatcctagt
    10561 gaatttagtg atgcaaagcg tttagaaaaa atcactcata ttaaagaaga atggctacaa
    10621 gcaaccataa aaacaggtag tgagcacgga acaggtggta tagtaaccaa acttaaagca
    10681 gctaaatttt tacttgaaca caataaaaaa atgtttttag caagtggctt tgatttaagt
    10741 gtggcaaaga catttttatt agaagataag caaataggtg gaactttgtt tgagtgatta
    10801 atttattaaa ttctctttta aaatcaaata agttataatt aaaactttta atttcacaca
    10861 aagcgaaaaa atgaaaaaaa ttatttttat gggtactcca tcttatgcaa cttgtatttt
    10921 aaaagcacta gtagaaaatg aaaattttaa actcgtagca ctttttaccc agcctgataa
    10981 agccgtaggt agaaagcaaa ttttaactcc aagtgatact aaggcttttt taagtcaaaa
    11041 ttatcctagt attcctattt ttactccaag ttctttaaaa gatgaaaata ttataagaga
    11101 gattaaggat ttaaatcctg attttatcgt ggttgctgcc tatggaaaaa ttttacctaa
    11161 agccattttg gatttagcac cttgtgtgaa tttgcacgct tctttacttc caaaataccg
    11221 tggtgccagt ccgattcaaa gtgcgatttt aaataaagat gaaaaaagtg gagtttgcac
    11281 catgcttatg gaagaagggc ttgatacagg tgctgtactt gaaagcttag agtgtgatat
    11341 aaaagataaa aattcaagtg aagtttttga acttttagca aatttggccg ctaagctcat
    11401 cctctctact cttttaaatt ttgataaaat tatccctaaa aaacaagagg aaagtctagc
    11461 aacgctttgt agaaaaatca aaaaagaaga tgggcttata aatttgcaaa atgcaagaga
    11521 actttatcaa aaatatctag cttttacccc ttggcctgga gttttcttgg aaaatggact
    11581 taaattctta gagcttgaac ttgtggatga attaaaacaa aatgctagga tgggtgaaat
    11641 tttagaatta gaaaaagaaa gttttttgct tgcttgcaaa caaggagttt tgcgtattaa
    11701 aaaacttcaa gaaagtggaa aaaaagctct tgatggtagg acttatttaa atggaaaaag
    11761 gcttaaaagt gaagatagtt tgtgttgaaa gtatagactc aactcatctt tttttatgcg
    11821 agcaaatacg caatggaaag attgatggaa attttgctat ttatgcttta gaacaaacaa
    11881 atggagttgg aagtagggaa aattcttggc aaagctctaa aggaaattta catctttctt
    11941 tttgtattaa agaagaagat ttgccaaaag atttgccttt ggcttctgta agtatttatt
    12001 ttgcttattt acttaaagaa cttttacaag aaaaaggttc taaaatttgg cttaaatggc
    12061 ctaatgattt atatttagat gataaaaaag ctggaggggt tataagtgct aaaatttcaa
    12121 attttatcat aggcggtatg ggtttaaatc tgaaattttc accccaaaat acagctttat
    12181 gtgatataga aatttcgctt aaagatttag tgagtgagtt tttgcaaaaa gtagaaaaaa
    12241 aaattttatg gaagaatatt tttagcaagt atatgttaga atttgaaaaa tcaagaaaat
    12301 ttagcgtcca tcatgaaggt aaagtttttt cacttgaaaa ttcttttttg tatgaagatg
    12361 gttcaatttt actaggtgat aaaagggtgt atagtttaag atgagcgaaa ttattacaat
    12421 agcaaatcaa aaaggtggag taggaaagac tacaacagca gtaaatttag ccgcttcttt
    12481 agctgtggct gaaaaaaaag tacttttgat tgatgttgat ccgcaagcta atgcgactac
    12541 aggacttggt tttaatcgta ataattatga gtataatatt taccatgttt ttataggaag
    12601 aaaaaagctt tcagatatta ttttaaaaac agaattgcca caacttcatt tagctccttc
    12661 aaatataggt cttgtaggta tagaacaaga gcttgctaaa ggtgaaaata atgagaaaaa
    12721 aatgctgctt aaaaatcaaa ttcaagaagt gattgatgaa tatgatttta ttattattga
    12781 ttctccgcct gctcttggaa gtattactat aaatgctttt gcagcaagtg atagtgtaat
    12841 tatccctata cagtgtgaat tttatgcgct cgagggtgta gctatggttt taaatacaat
    12901 taaaattatc aaaaaaacta ttaattctaa actcagggtt cgtggatttt taccgacaat
    12961 gtatagctct caaaataatc tttctaaaga tgttgtagat gatttgaaac aaaattttaa
    13021 aaaacaactt tttactatta atggaaacga agatgacttt attgtgatcc ctcgcaatgt
    13081 aaaacttgca gaaagtccaa gttttggaaa gcctataatt ctttatgata ttaaatcgcc
    13141 aggttctgtt gcttatcaaa atttggcgta ttctatatta ggataattat aatggggtta
    13201 aataaagata ggggtttaag tagtttaatc agtgatatgg atactgttta tagtaaagaa
    13261 ttgggttttg ataaaaatca aagcactatg atagaaattg atcaaatttc acccaatcca
    13321 tttcagccaa gaaagaattt tgatcaagaa gctttagatg aacttgctaa ttctatcaaa
    13381 gaatttggac ttattcagcc tattattgta tttaaaaaaa ataataaatt tattttaatt
    13441 gctggggaac gtcgcttaag agcagtgaaa gcattaggaa aaaaagaaat tctagctttt
    13501 attgctgata ttgatgagaa taagcttaga gaattggctc ttattgaaaa tatacaaaga
    13561 gagaatttaa atcctattga gcttgctaat tcttataagg atttaatgca agttcataaa
    13621 attactcaag agaatttagc agaacttatt cataagtctc gtactcaaat aacaaatact
    13681 ttaagacttc tgaatttaga tattagaact caagagttga ttgcttctgg aaaaatttct
    13741 cagggtcatg ctaaagtttt ggttggttta gatcaaaaag atgaaaaaat gttggttgat
    13801 agcataatag gtcaaaaact taatgttaga gatactgaaa aaatagttaa aaaaataaaa
    13861 aataatgaaa gcttacctaa tcaagaattt gaagatgaaa taaaaaaatt aaaacaaata
    13921 ctaaatcgct ttggatttga ctgcaaaaat aaaaataatg attttgtaat tcatttagaa
    13981 aatattgata aaattaaaaa attaatcaaa atgcttgaaa agctttaacc aaaatcttag
    14041 cttttttatg gtaaaatagt ccttcgaaaa ttctaaccaa ggagaattat gtttgaagat
    14101 atgcatcctt ccataatgct tgctactatg gctatttttt tagctatgat agttatttta
    14161 aatagtatgc tgtataagcc gcttttaaaa tttatggatg aaagaaatga ttctataaaa
    14221 aatgatgaga ataaagtaaa agaaaattct caagaagttt taggtgtgaa tgatgaatta
    14281 gaagctattc atattaacac tagagaagaa attcaaaaaa ttaaacaaag tgctatagct
    14341 gctgctaaag aagaggcaga gcaaattctt agaagcaaga aagaagaatt agaaagaaaa
    14401 atggccagtt tttatgcaga tttagccgtt caaaaaaaag agttgcaaga acatttaaac
    14461 atacatttac ctgagcttaa gcaagctttg caaaataaca taaagaaaat ttaagaggag
    14521 agaaatgagt aagttattct ttattatatt tttgctacct ttatatgctt ttggtgcatc
    14581 aaatggtagt ggagaatatg atattattcc aaggactatt aattttctaa tttttgtggc
    14641 tatattgtat tattttgttg caactccatt taaaaatttt tacaaaaacc gtattgtaaa
    14701 aatttcttct aaacttgatg aaattcaaaa aaaactttta gaaagtaaag ctaagaaatt
    14761 agacacgatg aaaaaacttg aagaagctaa ggcaagtgct gctgccgctt taattacagc
    14821 aaaaaaagaa gctgaaattt tagttcaaaa tattaagaaa gagactcaag atgagttaga
    14881 tttacttcaa aaacattttg aggaacaaaa agattatgaa tttagaaaaa tggaaaaaga
    14941 attagtatca aatactttaa atgaaatttt ttctgatcca aatatgacat taaaacagag
    15001 tgaaataata gaacttatga tgaagaaggt atcttaaata tggaaaatat aattgcaaga
    15061 agatatgcaa aagcgatagc ttcaagagct gatataaatg atttttatca gaatttgtgt
    15121 attttaaatt ctgcttttgt tttgccaaaa tttaaaaata ttatagaatc taatgagatt
    15181 aaaaaagaaa gaaaaatgga attttttgat tctttttttg atattaaaaa ttctagtttt
    15241 caaaattttt taagactttt gattgaaaat tcaagattag aatacattcc tcaaatagtt
    15301 aaagaacttg aaagacaaaa agcttttaaa gaaaatattt ttgttggtat tgtatattct
    15361 aaagaaaaat taagtcaaga aaatcttaaa gatcttgaag tcaaacttaa caaaaaattt
    15421 gatgcaaata tta
//
LOCUS       DAEBKH010000023        15264 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.023, whole genome shotgun sequence.
ACCESSION   DAEBKH010000023 DAEBKH010000000
VERSION     DAEBKH010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15264)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15264)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15264
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.023"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..1336)
                     /locus_tag="KIL20_000515"
     CDS             complement(<1..1336)
                     /locus_tag="KIL20_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HBD2720569.1"
                     /translation="MQRQSPEQILKKLEVKAKEEEKNKLAKLKIFLGYAAGSGKTYAM
                     LSEARTLRDNGVDVVLGYIEPHDRPETMALTQGFESIANLEIPYKNIVLKEFDLDATL
                     KRKPALVLVDELAHTNAKGLRNEKRFQDIEELLKAGIDVYTTLNIQHLESLNDLVANI
                     SKIEVKERIPDRIFDEADQVELVDIEPNKLLKRMQDGKIYKEKQAKLALENFFRQERL
                     IALREIALRRLASRVNLRASEQRLINDDLAYHTGEHILVCINASNAKVIRAAARLALA
                     FHAKLSALYIKNPNIKEEKALEENIELAKSFDAEIISVYDDDIARQIAEYSSLSNVSK
                     IVLGKNKDKKKFKEEIFEAVAKKAPNIDLYLVNENQISTPKIRSKKGFDFLGFLKITG
                     VLLLATFIAFVFHKFNTQPSNIVMIFILAVFASSFISDNKIFAFYSSLVSVLI"
     gene            complement(1339..1947)
                     /gene="kdpC"
                     /locus_tag="KIL20_000516"
     CDS             complement(1339..1947)
                     /gene="kdpC"
                     /locus_tag="KIL20_000516"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HBD2720570.1"
                     /translation="MLRTLLSFFVVMLILCTLIYPFALNTVAKFIFPYQSSGSLVDKE
                     GRPTLDISKAVGSKLLGQDFNKPYFLHSRASVSNYNTSDTNESSVSSGGFNYAMSNPA
                     LKERVQKDLQKFLDENPQITKEQIPLDLLSASGSGLDPHISLQAALVQIPRISQSSKI
                     TKEELEKIIQENTESKFLGIFGEEKVNVLAVNIAIAKAMKKE"
     gene            complement(1949..3994)
                     /gene="kdpB"
                     /locus_tag="KIL20_000517"
     CDS             complement(1949..3994)
                     /gene="kdpB"
                     /locus_tag="KIL20_000517"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HBD2720571.1"
                     /translation="MSKKQNKLITKEILNNAIKGAFLKFDPRFMVKNPVMFMVEVGLI
                     LTLILSIFPTLFNGNSDERIYNILITFILFITLLFANFAESIAEGRGKAQAATLRQSK
                     KDSKARRIKSDGSEEMLNSSELKIGDIVLVKAGELIPNDGEIIEGAASVDESAITGES
                     APVMREAGGDFSSVTGGTTVLTDFLKIKILVGAGESFLDKMINLVEGAARQKTPNEIA
                     LNTLLIVLSLSFLVVVVSLYLFMQFLGVSLPISWLVALLVCLIPTTIGGLLSAIGIAG
                     MDRVTRFNVIALSGKAVESCGDVDTMILDKTGTITFGNRLANEFYEVQGISKEEMIKA
                     CVLSSLKDETPEGKSIVALAQKMGYELEGNDIKEFIEFSAQNRMSGVDLQDNTKIRKG
                     AFDAIRAYISEMNGKIPSDLETKVMEISNLGGTPLVVCKNEKILGVIYLKDTVKPGLK
                     ERFDELRKMGIKTLMCTGDNPLTAATIAKEAGLDGFIAECKPEDKIEAIKKEQAQGKI
                     VAMTGDGTNDAPALAQADVGIAMNSGTQAAKEAANMIDLDSNPTKILEVVEIGKGLLI
                     TRGSLTTFSMANDIAKYFTILPAMFSVVLPQMQILNIMHLATPQSAILSALIFNAIII
                     PLLIPIAMRGVKFKPMKSEHLLLRNLSIYGLGGMIAPFIGIKIIDIPTAWILRILGV"
     gene            complement(4004..5695)
                     /gene="kdpA"
                     /locus_tag="KIL20_000518"
     CDS             complement(4004..5695)
                     /gene="kdpA"
                     /locus_tag="KIL20_000518"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
                     /protein_id="HBD2720572.1"
                     /translation="MLEILITLIIAFILALIFGNYLYKIASCKKTIFDFIFNPIDNLI
                     YKICAIDRKNMTWQKYSLHLIAFNALVAIFSFVIFYLQDKLFLNPNLINSMKGDLNLN
                     TVISFITNTNLQHYSGESALSLLSQNTGILLAMFVSSASGYSACMAFCRALCGMQMGN
                     FYEDFTRIITRLMLPLSFILAVIFISEGVVQNYHANFSVLTLENKFQSIATGPVAALE
                     SIKHLGTNGGGFFGANSSMPFENPTSLTNFLQILSMMLIPSACVVAFGLMVYHRKERQ
                     GFALMGKEGGVIFGAMGIIFIISLLLIYFSEKMSNPNLDSLGLNANLGNLEGKEIRFG
                     TDGSSLFSAVTTAFTTGSVNNMHDSLNPLSISATLLNMMLNVAFGGEGVGLMNMIIYV
                     LLTVFICALMIGRTPEFLGKKIESAQMKLIALVILIHPLLILVLSALAVVFAKDSISN
                     PSFHGLAQILYEFSSSAANNGSGLEGLKDDNLFWNLSTAFAMFCGRYLVLIAQLAIAG
                     SLLAKNTQENTANSLKTDNLTFMFVLVCIIYIFTALTFFPVLTLSSVAEYLSLWH"
     gene            complement(5705..5892)
                     /gene="kdpF"
                     /locus_tag="KIL20_000519"
                     /pseudo
     CDS             complement(5705..5892)
                     /gene="kdpF"
                     /locus_tag="KIL20_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344095.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
     gene            complement(6034..7458)
                     /locus_tag="KIL20_000520"
     CDS             complement(6034..7458)
                     /locus_tag="KIL20_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HBD2720573.1"
                     /translation="MDFLTSLSEGGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCIGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIALVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIIIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAALGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMAAGYL"
     gene            complement(7622..8872)
                     /locus_tag="KIL20_000521"
     CDS             complement(7622..8872)
                     /locus_tag="KIL20_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HBD2720574.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNINSAFVDSKGLAKKSVYELLNEQILPPLFPTNK
                     SQELAKKIIECLNEEGYFEYDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(8872..9600)
                     /gene="lptB"
                     /locus_tag="KIL20_000522"
     CDS             complement(8872..9600)
                     /gene="lptB"
                     /locus_tag="KIL20_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HBD2720575.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(9593..10000)
                     /gene="tsaE"
                     /locus_tag="KIL20_000523"
     CDS             complement(9593..10000)
                     /gene="tsaE"
                     /locus_tag="KIL20_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HBD2720576.1"
                     /translation="MKEFILAKDEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSTMQKYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(9997..10242)
                     /locus_tag="KIL20_000524"
     CDS             complement(9997..10242)
                     /locus_tag="KIL20_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HBD2720577.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLAIPSTKSIPKNAQNEYVVKL"
     gene            10397..11617
                     /locus_tag="KIL20_000525"
     CDS             10397..11617
                     /locus_tag="KIL20_000525"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HBD2720578.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVMIIGRESANDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            11630..12073
                     /locus_tag="KIL20_000526"
     CDS             11630..12073
                     /locus_tag="KIL20_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HBD2720579.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTFKSLGLHEVSVKLGHAIHAKFNINIKAE"
     gene            12073..12615
                     /gene="hslV"
                     /locus_tag="KIL20_000527"
     CDS             12073..12615
                     /gene="hslV"
                     /locus_tag="KIL20_000527"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HBD2720580.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHASLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            12612..13931
                     /gene="hslU"
                     /locus_tag="KIL20_000528"
     CDS             12612..13931
                     /gene="hslU"
                     /locus_tag="KIL20_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HBD2720581.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNIQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            13928..14803
                     /gene="era"
                     /locus_tag="KIL20_000529"
     CDS             13928..14803
                     /gene="era"
                     /locus_tag="KIL20_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HBD2720582.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIIALNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDKHEYFYDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLIHRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
     gene            14790..>15264
                     /locus_tag="KIL20_000530"
     CDS             14790..>15264
                     /locus_tag="KIL20_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720583.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEESDYCVLNLY
                     DQTLYLYFYQEGKFINLKKIENFNPSNMDLFFKQNRFIELLKHYESKLLLYQDLDT"
BASE COUNT         5562 a         2700 c         2190 g         4812 t
ORIGIN      
        1 aaatcaaaac acttaccaaa gaagaataaa aggcgaaaat tttattatca gaaataaaag
       61 aagaagcaaa aactgctaaa ataaaaatca taactatatt acttggctga gtattaaatt
      121 tatgaaatac aaaagctata aaagttgcta aaagcaaaac tcctgtgatt tttaaaaaac
      181 ctaaaaaatc aaaacctttt ttacttcgta ttttaggagt agaaatttga ttttcattaa
      241 caagatataa atcaatatta ggtgcttttt tagcaacagc ttcaaaaatc tcttctttaa
      301 actttttttt atctttattt ttacctaaaa caattttaga aacattgcta aggcttgaat
      361 actctgcaat ttgtcttgct atatcatcat catatacgct aatgatttca gcatcaaaac
      421 ttttagctag ttctatattt tcttctaagg ctttttcttc tttaatattg ggatttttta
      481 tataaagcgc actcaattta gcatgaaaag ctaaagcaag tcttgcagct gcacgaataa
      541 cctttgcatt tgaagcatta atacaaacta aaatatgctc tccagtatga taagctaaat
      601 catcattaat aagcctttgt tcacttgctc ttaaattcac tcttgaagca agtcttctta
      661 aggcaatctc acgcaaagct ataagtcttt cttgacgaaa gaaattttca agtgctagtt
      721 tagcttgttt ttccttataa attttaccat cttgcattct ttttaaaagc ttattaggtt
      781 caatatcaac aagttcaacc tgatcagcct catcaaaaat acgatcagga atacgctctt
      841 taacttctat cttactgata ttagcgacta aatcatttaa actttctaaa tgttgtatat
      901 ttaaagtagt ataaacatca atccctgctt ttagaagttc ttctatatct tgaaaacgct
      961 tttcattacg caacccttta gcattagtgt gtgcaagctc atctactaaa accaaagcag
     1021 gttttctctt aagggtagcg tctaaatcaa attcttttaa tactatattt ttataaggaa
     1081 tttcaagatt agctatactt tcaaaacctt gtgttaaagc cattgtttca ggtctatcgt
     1141 gaggctctat atagcctaaa acaacatcaa ctccattatc ccttaaagtt ctagcttcac
     1201 ttaacatagc ataagttttt ccagaacctg cagcataacc taagaagatt tttaattttg
     1261 caagtttgtt tttttcttct tccttggctt taacctcaag ttttttaaga atttgttcag
     1321 gactttgtct ttgcatgttt attctttttt catggcttta gcaatagcta tattaacagc
     1381 taaaacatta accttttctt ccccaaaaat ccctaaaaat ttagactcgg tattttcttg
     1441 aatgattttt tctagttctt ctttggtaat ttttgaagat tgacttatcc taggaatttg
     1501 cactagggct gcttgaagac tgatatgagg atcaagtcct gatcccgaag cacttaacaa
     1561 atccaaagga atttgttctt ttgtaatttg cggattctca tctaaaaatt tttgcaaatc
     1621 tttttgcaca cgctctttta aagcaggatt tgacatagca taattaaatc cacctgaact
     1681 tacactgctt tcatttgtat cacttgtatt gtaatttgat acagatgctc ttgaatgtag
     1741 aaaataaggc ttattaaaat cttgacccaa aagctttgaa cctaccgctt tgcttatatc
     1801 caaagtcgga cgaccttctt tatccactaa acttccactt gattgataag gaaaaataaa
     1861 ttttgcaacc gtatttaaag caaaaggata aataagagta cacaatatta gcattaccac
     1921 aaaaaaacta agcaaagttc taagcatatc acactcctaa aattctaagt atccaagctg
     1981 taggaatatc aattattttt atccctataa aaggtgctat cataccacct aaaccataaa
     2041 tactcaaatt tcttaaaagc aaatgctcac ttttcatagg cttaaattta actccacgca
     2101 tagcaatagg tatgagcaaa ggtataataa tagcattaaa aataagtgct gataaaatag
     2161 cgctttgcgg ggtagccaaa tgcataatat ttaaaatttg catttgaggt aaaaccacac
     2221 taaacatagc aggtaaaata gtaaaatact tagcaatatc atttgccata ctaaaagttg
     2281 taagactgcc tctagtaata agcaaacctt ttcctatttc aaccacttct aaaattttag
     2341 taggattaga atcaagatct atcatattgg ctgcttcttt ggccgcctga gttcctgagt
     2401 tcatagctat acctacatca gcttgtgcaa gagccggagc atcattggtt ccatctcctg
     2461 tcatggctac tatcttacct tgagcttgtt cttttttaat ggcttctatt ttatcttcag
     2521 gcttgcattc tgctataaat ccatcaagcc ctgcttcttt agctatagta gctgctgtta
     2581 aaggattgtc tccagtacac attaaagttt ttatgcccat ttttctaagc tcatcaaagc
     2641 gctctttaag tcctggtttt actgtatcct ttagataaat cactcctaaa attttttcat
     2701 ttttacacac taccaaagga gtgccaccaa gatttgaaat ttccattacc ttagtttcta
     2761 aatcgctagg aatttttcca ttcatttcgc ttatataagc tcttatagca tcaaaagcac
     2821 ctttgcgaat ttttgtatta tcttgtaaat ccacaccact cattctattt tgagcgctaa
     2881 attcgataaa ttctttaata tcattacctt ctaattcata acccattttt tgagccaatg
     2941 caactatgct tttaccttct ggagtttcat cttttaaaga ggataaaaca caagctttaa
     3001 tcatttcttc tttacttata ccttggactt cataaaattc atttgccaaa cggtttccaa
     3061 aagtaatcgt tcctgtttta tccaaaatca tagtatcaac atcaccacaa ctttcaacag
     3121 ccttgcctga aagtgcgatc acattaaaac gcgttaccct atccatacct gctattccta
     3181 tagctgataa aagcccccct atagttgtag gaataagaca tacaagcaat gctactaacc
     3241 acgaaatagg caaactcacg cctaaaaatt gcataaaaag atataaactt acaaccacca
     3301 ccaaaaaact caaactaaga acaattaaaa gagtattaag agcaatttca tttggagttt
     3361 tttgacgcgc agcaccttct acaagattga tcattttatc taaaaaactt tccccagctc
     3421 caactaaaat tttaatcttt aaaaaatcag ttaaaaccgt agtcccacct gtaacagaag
     3481 aaaaatcacc gcccgcttca cgcataacag gagcactttc acctgtaata gctgattcat
     3541 caacacttgc agcaccttct ataatttctc catcattagg tataagttca cctgctttaa
     3601 ctaaaactat atcacctatt tttaactcgc tagaattaag catttcttca ctgccatcac
     3661 tttttatgcg tctagcttta gaatcctttt tgctttgtct taaggtagct gcttgggctt
     3721 taccccttcc ttctgcaata ctttctgcaa aatttgcaaa aagcaaggtt ataaataaaa
     3781 taaaagtgat taagatgtta taaattcttt catcagaatt tccattaaac aaagtaggaa
     3841 aaatacttaa aatcaaagta agaatcaatc caacttccac cataaacata acaggatttt
     3901 ttaccataaa gcgtggatca aattttaaaa atgctccttt tatggcatta tttaaaattt
     3961 cttttgtaat gagtttattt tgttttttag acattgactc tccttaatgc cataaagata
     4021 aatattctgc aacgcttgat aaagtaagca ctggaaaaaa agtaagtgca gtaaaaatat
     4081 atataataca aacaagcaca aacataaaag ttaaattatc cgtttttaaa gaatttgcag
     4141 tattttcttg tgtattttta gccaaaagcg atccagctat agcaagctga gctattaaaa
     4201 ccaaataacg cccacaaaac atagcaaaag ctgtacttaa attccaaaat aaattatcat
     4261 cttttaaacc ttcaagtcct gaaccattat ttgctgccga agaactaaat tcatataaaa
     4321 tttgagccaa gccatgaaag ctaggattgc ttatactatc ttttgcaaaa acaacagcta
     4381 atgcacttaa aacaaggatt aataaaggat ggataagaat taccaaagct ataagcttca
     4441 tttgtgcgct ttctattttt ttacccaaga attctggagt tctgcctatc attaatgcac
     4501 aaataaacac ggttaaaagc acataaataa tcatattcat aagccctact ccttcgccac
     4561 caaaagccac atttaacatc atatttagca aagtagcact gatgcttaaa ggatttaaac
     4621 tatcgtgcat attattgacg cttcctgtag taaaagcagt agttacagca ctaaataaac
     4681 tcgaaccatc tgtgccaaat cttatttctt taccttctaa atttcccaaa tttgcattta
     4741 aacccaaaga atccaaattt ggatttgaca ttttttcgct aaaataaatt aaaagcaaag
     4801 aaatgataaa aataatcccc attgcaccaa aaataactcc cccttctttt cccataagag
     4861 caaaaccttg tctttctttt ctatgataaa ccatcaatcc aaaagctaca acacaggcac
     4921 taggaataag catcatggat aaaatttgta aaaaatttgt aagtgaagta ggattttcaa
     4981 aaggcatgct tgaattagca ccaaaaaaac cacccccatt tgtccctaaa tgttttatag
     5041 actcaagagc tgcaacagga cctgtggcaa tgctttgaaa tttattttct aaagtaagca
     5101 cgctaaaatt tgcgtgatag ttttgcacca cgccttcaga gataaaaatt acagccaaaa
     5161 taaaacttaa aggcaacatc aaacgcgtaa taatacgcgt aaaatcttca taaaaatttc
     5221 ccatttgcat accacataaa gcacgacaaa aagccataca agcagaatat ccacttgcac
     5281 ttgaaacaaa catagcaagt aaaatgcctg tattttggga aagcaaactt aaagcactct
     5341 ctccactata atgctgaagg tttgtatttg taataaaact aattacagta tttaaattca
     5401 aatccccttt catagaattt atcaaattgg gatttaaaaa aagtttatct tgcaaataaa
     5461 aaatcacgaa agaaaaaata gccactaagg cattaaaagc aattaaatgc aaagaatatt
     5521 tttgccaagt catatttttt ctatcaattg cacaaatttt ataaattaag ttatcaattg
     5581 gattaaaaat aaaatcaaaa atagtttttt tacagcttgc aattttataa agataatttc
     5641 caaaaattaa agccaatata aaagctataa tcagtgttat taaaatttct agcatatttt
     5701 tcctttaaaa tttttcagga tataatagag cataaaataa ataaagagca agtattaagc
     5761 ttaaaactag taaaaatatc atccgcgtgt cctagtttga acttcacaaa aacggataaa
     5821 aaaccataaa ctaccaaaag ctaaaagcag aagcaaagca aagataacat ccataggata
     5881 gccctttctc attgattcaa aataggattt attctatcct tgttaagctt atattttgat
     5941 taatactaat tttatgattt atttataatt tttatctata ttaaataaaa agacaaatga
     6001 aaaatttagc aggaaaaatc ctgctaaaaa ttgttaaaga taacccgctg ccatagcaat
     6061 aaaatatcct gctatacaag aagtgattac acctataaga cctggtaaaa taaaactatg
     6121 attgataaca aatttaccga tgtgagtagt acctgatcta tcaaattgta tagtagctaa
     6181 atcgcttgga taagttggta aaatataata cccataacaa gcagccgcaa aggcaacaat
     6241 tacaccaggt tcaacaccaa ttcctaaagc caaaggaaca aaagctgaaa tagccgctgc
     6301 ttgagagttt acaaattttg aaattaaaag aagcattaca gcataagtcc aaggatgctc
     6361 ttttactata tctccaagcg ctgctttcat cataggagtg tgaactgcaa acatagtatc
     6421 agccatccaa gaaattccaa aaaccgcaac aagtgctatc atacctgatt taaaaatttc
     6481 attagagccg attttctttg catctgtttt agtaaagatg ataatcaaag aacctgctaa
     6541 aagcataaac atctgaataa ctgaaaccat ggataaaaca tccattttag gattgcctaa
     6601 agcatctact tgaggaatgc cattttttac aacttgcccc cagtttggac gcaagaaatc
     6661 aaatacacct aataaagcca ctaaagcaat agctcctaag aaaatccaca ttgcaaccca
     6721 attgcttttt ggaagtttaa cacctaaaag tgttttagaa tccccataaa catatttttt
     6781 aaattcagga tctttaagtt tttcttgaaa tacttcatct ttatccaaat cttttcctct
     6841 aaaccaagaa aaaattccta tacacaatac accaaataat gtactaggta tggtaatttg
     6901 aagaagatta atataaccat caaaacctgc taatttatga ttagcattta aaagcaaagc
     6961 agtcaaactc acaacagcca cagatacagg agatgcaata atacccattt gtgatgatat
     7021 agaagctgcc gccattggac gctcaggacg aataccgttt ttaatcgcta tatcataaat
     7081 aataggcata atagtataaa ccacatgtcc tgttccgcaa agtatggtca aaaagcaggt
     7141 tacaaaaggc gctaatattg tcaaaaactt aggattgcgt cttaaaattc tttctgctat
     7201 ttgaagcata acatccaaac caccacttgc ttgcaaagtt gcactcgcaa ccactaccgc
     7261 taaaatcgta agcataacat ctatggctgg ttttccaggc tttatatgaa aagcaaatac
     7321 aagcattaaa atacctatac caccaagtaa accaagcgct atgccgcctt tttttgcacc
     7381 gtaaaaaaga caaattaaaa cgataatgat ttggattgca aattgccctc cctcactaag
     7441 gcttgttaaa aagtccattt taactccttt gaaaattgat atttaaaaac agttattatt
     7501 gtatcacatt tttaaattaa agaataatat ttctaaaaat aaaacaataa ttttttatat
     7561 tatttaaatt aaatttaaat ataaaacaaa agtgtaatgg gtttgataga ttgatagaat
     7621 tttatccttc aagttcatat aatttttttc tatctgtaga gcttgctata ttaagatgtt
     7681 tgcgatattt tgtaatagtt cttcgcccta tatcgacttt aaattcttct ttgattaatt
     7741 ctaaaatttt actatcgctt aaaggtttat tgcgatcttc attctttact aaatttgcca
     7801 caaattcttt aacacctaca tttgaagtct ctccctcttc atcaagagca aaagcaaaaa
     7861 aatcacgcaa ggggataagt cctctttcac aacttaaata tttatttgcc acagctcttg
     7921 atatagtcga agcattgcgt tctaaatcaa gtgctaaatc cttaaaagtc ataggtttta
     7981 tctcttttcc catgaaaaaa tcatattgat attctactat cataagccct attttataaa
     8041 gagtagcttt tctcatcgct aaagcatcaa ctaaattttt tgcttctttg atgtaatgac
     8101 ttaaaaaatc atgctctaaa ccatcagttt ggattgaaat ttcaggataa taatcatcat
     8161 tgatttttac tttaatttca ccattttctt tataaacaaa aatatcagga acaattatac
     8221 gagaatcttc aaaatattcc aaaaaagggg gagtgctaaa gcgcttaagt acagctaatg
     8281 cttctttata taaaggctct ttggtatagt tttgtatatt ttcaaaatcc ataattaaca
     8341 ttctacaaaa ctcatcaata tcttcatcta attccatatt ttcaagagca aataaaaatg
     8401 cttctttata atctttagct cccactccta caggatctaa aaatttaaat cttgctctta
     8461 ctcgctcaat ttcttctaag gaatactctt ttaaaaattc ttcatcgtat tcaaaatatc
     8521 cttcctcatt taagcattct ataatttttt ttgcaagttc ttgagatttg tttgtaggaa
     8581 ataaaggagg aagaatctgt tcatttaaaa gctcataaac actttttttg gcaagtcctt
     8641 tactatccac aaaagccgaa tttatattat gtttataaaa tgaatcaaaa taattcttac
     8701 ccttatcatg agtttgtatc gaatcttgaa catttaagaa aggattatcc tcagcaaatt
     8761 tatctaaatt ttcttttaaa tcctctatat ttgcttgtaa aatcggcaac caagagcgta
     8821 aagtttgaga aattttagtc ttgggcgctt gggtgatttt ttgctttaac atcaatcaag
     8881 gagtttaaac tccgctccta aataatactt tttcacgtct ttattggttg caatttcatc
     8941 agcattccca ctagcaagca aagaacctga tcttataaca taagctctat cacaaatagc
     9001 caaagtctca cgcacattat gatcggtaat taaaacccca atccccaatc ttttaagctc
     9061 tttaattaaa gtttgaattt cagccactgc tataggatca acacctgcaa aaggctcatc
     9121 aagaagtaaa aacttaggtt cgcacatcaa gcttctagcg atctcgcaac gccttctttc
     9181 acctccactt aaacttaaac ctttccttaa acgaataggc tctatactta agagttcaag
     9241 catttgctca actttatcat gtaaaatttt tttatcttta taaaaaatct gagccgctaa
     9301 aagcaggtta tcttctacgc ttaaatcctt aaaaatacta ctttcttgag gtaaataacc
     9361 tatccctgat ctagctcttt tatttaaagg atcttttgtc acatctaaac catctaaaag
     9421 aacttttcca ctacttgggg aaataagtcc acatatcata taaaaagttg tcgtttttcc
     9481 tgcaccattt ggccctaaaa gtcctacaac ttctccgcta ttaacctcta aagaaattcc
     9541 atgtataatc ttagtttttt taataatttt ttctaaattt acaatttcta atttactcat
     9601 aaatttcata ctttcttttg tcgtctttaa tgctaatttt aatctggata gtagaaattc
     9661 caaatttcat taaagttttt ttcaaatttt caccgcccca ttcaaccaaa tgcaaacctt
     9721 tttcaaaaaa attttcaaat aaaccattcg ctaaaagtcc ttctaaacct tcttgataaa
     9781 tatcataatg ataaatgcaa atatcatgat tttcatattt ttgcatagtg gaaaaagttg
     9841 gagaatctac ccttgcatca agaccaagaa atttaaccca agcttgtact aagcttgttt
     9901 ttccgctagc caaatctcct tgaagcaaaa caacaccttc tttaggcatt atttgaagca
     9961 tcgttttgat ctcatctttt gctaaaataa attctttcat aattttacca catattcatt
    10021 ttgtgcgttt ttaggaatgc ttttcgtgct aggtatagct aggactttat atttttgagt
    10081 gtattcagta aaatgcaaag tgatgatatc acccacctta acctctttac tcgccttaac
    10141 aataacgcca ttaatcccca ctacaccact tttacacata tcctcagaaa tagctcttct
    10201 tttcgtgata ttaactacat ttaaaaattt atctactctc ataaaagcaa ttttagcaaa
    10261 aaaaatcaat ttttagaaca aaatttgctt acgcctttgc tttatttttt aagaaaatag
    10321 caagtaaaaa cttttcttta atgaaatttg gatacaattt tacaattttc aaatctattt
    10381 taacaaagga tatcttatga aaaatgaagt aaaaaaagta gttttagcgt attctggagg
    10441 gcttgatacg agcatcattt taaaatggct tcaagatgag tataattgtg aagttgtaac
    10501 ttttacagca gatattggtc aaggtgaaga actcgaacct gcaagaaaaa aagccctttc
    10561 tttaggcata aaagaagaaa atattttcat taaagattta agagatgaat ttgttaaaga
    10621 ttatgtattt cctatgttta gagccaatgc gatttatgaa ggagaatatc ttttaggaac
    10681 aagtatagca agaccactta tagcaaaaac tcaagcacaa atcgccctgc aaacaggtgc
    10741 tgatgcggta agccatggcg ccacaggtaa aggaaatgat caagtgcgtt ttgaacttgg
    10801 ttatcttgct tttaatcccg atttaaaaat catcgctcca tggcgtgagt gggatttaaa
    10861 cagtcgtgaa aaacttcttg cttatgcgca aaaacacggt attgatattt ctaagaaaaa
    10921 aggaaaatcc ccttattcta tggacgcaaa tttacttcat atttcttacg aaggacttgt
    10981 tttagaagat cctgcacacg cacctgaaga agatatgtgg agatggagta aaagcccaaa
    11041 agacgctcca aatgaaagtg aaattataga acttgatttc caaaaaggag atttagtagc
    11101 gataaatgga gaaaaactaa gtcccgcagg acttttaacc aaacttaacg aactaggctg
    11161 caaacacggt ataggacgcc ttgatatagt agaaaatcgc tatgtaggca tgaaaagccg
    11221 tggttgttac gaaactccag gcggtactat acttttaaaa gcacacagag cacttgaaag
    11281 catcacgctt gatagagaag cagcgcactt aaaagatgaa ctcatgccaa aatacgcaag
    11341 tttaatttat aatggctatt ggttctcgcc tgaaagaatg atgcttcaag ccttaatcga
    11401 cgagtcacaa attcatgcca atggcagagt aaaactcgag ctttacaaag gcaatgtgat
    11461 gattatagga cgcgaaagtg caaatgatag cttgtttaac gcagcttatt gtacttttga
    11521 agaagatgaa gtgtataatc aaaaagacgc agcaggcttt atcaagctta atgctttgcg
    11581 ttttatcatc gcaggaaaaa atggaagaaa attttaataa aggaataaaa tgaaagtatt
    11641 attaatcaaa gatgtaaaag cacttggaaa agcaggagaa ataaaagaag taaaagacgg
    11701 ctacggacaa aatttcttaa tcgctaaagg ctttgctaaa gcagctacta atgaagtttt
    11761 aagaaaatac gaaagcgaca agaaaaaaga ggctgaaaat ttacgctttg aaatcgcaaa
    11821 tttagaaaaa ctcaaagaag aacttagcaa aatcactctt gaaatttcaa aacccgtagg
    11881 tgcaaatgga agtttgtttg gtggagtaac caaagatgaa atcgctcacg ccctaaaaga
    11941 gcaaagtcac atagaaatcg ataaaaaaag tttagaatgt gacactttta aaagtcttgg
    12001 acttcatgaa gtaagcgtaa agctcggaca cgcaatccac gctaaattta atataaatat
    12061 aaaggcggaa taatgtttca cgcaacaacg attttagctt acaaaggcaa aaacaaatcc
    12121 gtaatcggtg gagatggaca agtaagcttt ggaaacacag tattaaaagg caatgccgta
    12181 aaaataagaa aacttaataa tggtaaagtt ttagccggtt ttgcaggctc aacagctgat
    12241 gcttttaatc tttttgatat gtttgaaaat ctccttcaaa gttctaaagg cgatctttta
    12301 aaagcagcga ttgacttttc taaagaatgg agaaaggaca aatacctaag aaaacttgaa
    12361 gccatgatgc ttgtacttga tagaaatcac atttttttac tttctggtac aggcgatgtg
    12421 gtcgaacccg aagatggaca aatcgcagcc ataggaagtg gtggaaacta tgcactttca
    12481 gctgctagag ccttagcaaa acatgcaagt ttagatgaag aagagcttgt aaaatcaagc
    12541 cttcaaatcg cgggtgaaat ttgcatttat accaatacta atatcaaaac ttatgtgatc
    12601 gaggatgaga aatgaatcta actccaaaag aaattgttaa atttttagat gattatgtca
    12661 taggacaaaa aaaagctaaa aaaatcatag ctatagcttt aagaaatcgc taccgcagaa
    12721 tgcaacttag ccctgagttg caagatgata tagtgccaaa aaatatcttg atgataggtt
    12781 ctacaggcgt aggaaaaaca gaaatcgcta ggcgtttagc taaaatgatg ggctttcctt
    12841 ttatcaaaat cgaagcgagc aaatatactg aagtaggttt tgtaggtcgt gatgtagaaa
    12901 gtatggtaag agatcttgcc aatgcggctt taaatttagt aaaaaatgag caaagagaaa
    12961 aaaacaaaga taaaatcgat gaatttatag aaaataaaat tttagaaaaa cttttgccac
    13021 ctttaccaaa gggtatcagc gatgaaaaac aagaagaata taaaaacagt cttgaaaaaa
    13081 tgagaactaa actaagaaat ggcgatcttg atgaaagcac tatagagata gaaatttcgc
    13141 aaaatatgtt cgataccaat cctaacctac ctcctgaaat gggtgcaatg caagatatag
    13201 ttaaggttat aggtgttggc agtaaaaaag tcaaaaaaga aatgaaaatc aaagacgcta
    13261 aaaatgcttt aaaaaacgaa gcaggagaaa aaatcctaga tcaagaaagt atcaaaagcg
    13321 aagccttaaa aagagcggaa aatgaaggga ttatttttat tgatgaaatc gataaaatcg
    13381 ctgtttcaag cggaaattca aatcgccaag atccaagtaa agaaggggtg caaagagact
    13441 tacttcctat agtcgaggga tcaaatatac aaacaaaaat aggtacttta aaaaccgatc
    13501 atattctttt tatcgctgca ggggcttttc atcttagcaa accaagtgat cttatccctg
    13561 aacttcaagg acgctttcct ttaagagtgg aattagatag tcttgatgat aaagctcttt
    13621 atgaaatttt aacacgccct aaaaattcac ttttaaaaca atactctcag cttttaaaaa
    13681 ctgaaaattt agaacttgaa tttgatgatg aagctattaa agaaatagcg aaaatagctt
    13741 caagagccaa tgaagaaatg caagatatag gtgctagacg cttacatact gtgatagaaa
    13801 aattacttga agatctaagc tttgaagctg atgagtatgc gggtaaaaaa ttcgtagtgg
    13861 ataaaaaaat ggtagaagaa aaactcggag atatcataga aaataaagat cttgcaaggt
    13921 atattttgtg aaaagtggct ttgttagcat catagggcgt actaatgcag gaaaaagtac
    13981 tttaatcaat tccttattag aagaaaaaat cgccctagtt tctcacaaac aaaacgccac
    14041 aagacgtaaa attaaagcca tagtgatgca tgaaaaaaat caaatcattt tcatcgatac
    14101 cccaggactt cacgaaagcg gtgctacgct taatcaactg cttgtccaaa gtgctattaa
    14161 atccatgggg gattgtgatg tgattttatt tgtggcgagt gtttttgata gtacaaaaga
    14221 ctatgaaaat tttcttagtc taaacccaca agtaccacat atcatcgctt taaataaagt
    14281 agatttaacc gacaatgcta cacttttaaa aaaacttagc gaatatgcaa aatttagcca
    14341 acattttaaa gctatcattc cttattcttc taagaaaaaa agctataaaa aaggcttatt
    14401 agatgaaata gtaaaatacc ttgataaaca tgagtatttt tatgatcctg aatttttaag
    14461 tgcgagtagc gaaaaagaac tttatagaga tttcatactt gaaagtattt atgaaaattt
    14521 aagtgatgag cttccttata gtagcgaagt gcttatccat cgcaccaaag acacacctaa
    14581 tcttttaatc ctagaagcca atatcatcac cgatacaaac tctcacaagg gtatgcttat
    14641 aggaaaagaa ggggcaactt taaaaagaat aggcaaagat gcacgcttta aaatttcaaa
    14701 acttgcacaa aaaaaggtac ttttaaagct tttcgtaaca gtgaaaaaaa actggcaaaa
    14761 agatgaagaa tttttaaaaa aacttttaaa tgatgaaaat taattcatta aataaaataa
    14821 attttataaa atctacagat ttgctttatg ctcaaagaac aggaatatcc aaagaagatg
    14881 aactttttaa caatttaact gcagatttta agctaagcaa accctttgac taccaaatag
    14941 ctttttttaa acataatgaa atttatcatt gttttttagc gcctgtttac aaattgaaaa
    15001 aaagtcgttt ttgctttcct gagcctttaa tttttcaagc tttgtttgat gaaagattta
    15061 ttgaggaaag tgattattgt gttttaaatt tatatgatca aactttatat ttatattttt
    15121 accaagaggg aaaatttatc aatcttaaaa aaatcgaaaa tttcaaccca agtaatatgg
    15181 atttattttt taaacaaaat cgatttatag aacttttaaa acactatgaa agcaaattgc
    15241 tactttatca ggatttggat acaa
//
LOCUS       DAEBKH010000024        14531 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.024, whole genome shotgun sequence.
ACCESSION   DAEBKH010000024 DAEBKH010000000
VERSION     DAEBKH010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14531
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.024"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..288)
                     /locus_tag="KIL20_000531"
     CDS             complement(<1..288)
                     /locus_tag="KIL20_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HBD2720584.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANN
                     HISGRSLDSPLTAFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKN"
     gene            456..818
                     /locus_tag="KIL20_000532"
     CDS             456..818
                     /locus_tag="KIL20_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HBD2720585.1"
                     /translation="MSNYPKAIGPYSAYREANGLLFISGQLPINPASGEIESSDIKEQ
                     TKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEIIAQKG"
     gene            822..2261
                     /gene="dcuC"
                     /locus_tag="KIL20_000533"
     CDS             822..2261
                     /gene="dcuC"
                     /locus_tag="KIL20_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
                     /protein_id="HBD2720586.1"
                     /translation="MLGIVFSLFSVFLLVFMLYKKINAHMALLLSGLLLLSLAALFGL
                     SPHIVTKGSLNLGFFDIFQVFNQTMSSTLAGLGLTLMTIAGFSAYMDHVGASYALFKV
                     FEKPLKAVKSPYVLLIVAYFIVQFLVLFIPSHAGLALLLMVTMYPILVRSGVSKLSAL
                     SVIAICQYIDHGPGSGNVIMASKVAEVDPAIYFVHYQLPTTLPIIIAVGIAIYLCNKF
                     FDKKDNFVFNAQEIEKELNENEGKEKELKKPPRIYAILPIIPLVLILGFSSVLDSILV
                     LMGISSAEEVKAVASTAIKMNVPVAMVISTFVAIIFEMIRYKSIVETLNSIMIFFKGM
                     GHLFVITVSLIVCGQVFASGLLSVGFVDTLIEFCKNAGFGVLAIIIAVSILLAVCAFL
                     MGSGNAAFFSFAPLIPNIAKHFGVETITMIAPIQIMTGFGRCVSPIAPAILAISAIAK
                     VSPFAVVKRTAIPMLVAAIVNVIMTYIYL"
     gene            2274..3437
                     /locus_tag="KIL20_000534"
     CDS             2274..3437
                     /locus_tag="KIL20_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HBD2720587.1"
                     /translation="MNSKTKLIHCGRGDQGAEVRSVNPTLMRASTILFKDHATWQKYR
                     ELRKTDRVLSYGARGTTTNFELEKLICTLEGGYRAQLFPTGLAALAMVLLNYASKDAH
                     FLITDAIYGPVRTICELFLDKMGVEIDFLKADASDVEEKIKPNTKLILCESPGSILYE
                     VIDLPKLCKIAHAHNIPVAIDNTYSSGYFLNPLELGVDISVIAATKYLSGHSDVTMGI
                     VVINEKEWKNFDKLPEALGFTTSPDDAYLVLRGMRTLDVRMKAHEKSADEIVEFLQSR
                     KEIKTIFYPKLKSHPNHEIFMRDHKGANGMITIEFTEGYSKDDAIKFVDKLEYFSIGA
                     SWGGYESLATVTTPPRTATDWSARGPFVRFHIGLEDTKDLIADLTQAFDSIKK"
     gene            3447..4814
                     /locus_tag="KIL20_000535"
     CDS             3447..4814
                     /locus_tag="KIL20_000535"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HBD2720588.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQPARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTISNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLAKIKN
                     SAILK"
     gene            4823..6163
                     /locus_tag="KIL20_000536"
     CDS             4823..6163
                     /locus_tag="KIL20_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HBD2720589.1"
                     /translation="MFYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKE
                     ECVLNAFKAFENLSTDKNTPIWVNDQKLVPIYAAMLDGIASHALDFDDTHTEAILHAS
                     AILTPLCLSYGFHVNKDAKKIIKAFIVGWEIAARVGIASKGTFHKRGFHTTAIAGIFG
                     SVSASAILLDLNKEQIINALGLAGSFASGVNEFLSNGSNSKVLHIANAIKNGIMVAHF
                     AKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELGKALGEIWQTMQVSIKPYPSCHFAH
                     GLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLM
                     ALGFFDGKITLDSYENLKREEVLEFAKKISYEKRKSQGFPKYFPGHLEASLQDGRIIQ
                     KDVFINKGNFDNPLSFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF"
     gene            6245..6469
                     /locus_tag="KIL20_000537"
     CDS             6245..6469
                     /locus_tag="KIL20_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HBD2720590.1"
                     /translation="MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDTSCVILRSDEAKTIEVNLI"
     gene            6466..8307
                     /gene="feoB"
                     /locus_tag="KIL20_000538"
     CDS             6466..8307
                     /gene="feoB"
                     /locus_tag="KIL20_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HBD2720591.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSVLSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIH
                     KFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGI
                     IAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGF
                     GCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGI
                     YILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAG
                     TFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLELDWKL
                     SVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIY
                     NPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLYIAKILLN"
     gene            complement(8304..9797)
                     /locus_tag="KIL20_000539"
     CDS             complement(8304..9797)
                     /locus_tag="KIL20_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HBD2720592.1"
                     /translation="MTKLSNEELKNILEGRIKKLENSILKEDKIVNEESVKILAKHLS
                     LGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKVGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYAFIEQ
                     NFDENPMLSKDFWKYLEISFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGVAYSILKAFEDNIAKISSLKAS"
     gene            complement(9801..10625)
                     /gene="fabI"
                     /locus_tag="KIL20_000540"
     CDS             complement(9801..10625)
                     /gene="fabI"
                     /locus_tag="KIL20_000540"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HBD2720593.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEVHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            complement(10629..11300)
                     /locus_tag="KIL20_000541"
     CDS             complement(10629..11300)
                     /locus_tag="KIL20_000541"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HBD2720594.1"
                     /translation="MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVVFL
                     ENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEVIDLNYEKLIIAYEPIYSIGTGV
                     SAQATDIAKVLEFLASLTKAPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            complement(11297..12499)
                     /locus_tag="KIL20_000542"
     CDS             complement(11297..12499)
                     /locus_tag="KIL20_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HBD2720595.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKT
                     KAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            complement(12502..13500)
                     /gene="gap"
                     /locus_tag="KIL20_000543"
     CDS             complement(12502..13500)
                     /gene="gap"
                     /locus_tag="KIL20_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HBD2720596.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAATTNLKGILMVDDE
                     ERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            13560..14105
                     /gene="nadD"
                     /locus_tag="KIL20_000544"
     CDS             13560..14105
                     /gene="nadD"
                     /locus_tag="KIL20_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HBD2720597.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFK
                     QNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNI
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            14133..14459
                     /gene="rsfS"
                     /locus_tag="KIL20_000545"
     CDS             14133..14459
                     /gene="rsfS"
                     /locus_tag="KIL20_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HBD2720598.1"
                     /translation="MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
BASE COUNT         4963 a         2446 c         2223 g         4899 t
ORIGIN      
        1 atttttaata aaaaaagtag atcctctaat taattttgat tttccaacaa gagccttata
       61 atcacataaa aaatcttttt ctaaatattt tttattttgc ataagctcac ttgcaaaagc
      121 agtcaaggga gaatctaaac ttctcccact aatgtgattg ttagcaattg ccgcaatata
      181 agccccatct tcagtaatta catgaaaaac tatctcatat tgctcaccta aaacttctcc
      241 taaaaaatat gtcaacttta taaattgttg tttttgtccc tcatccataa aactgccttc
      301 aataaaaaat taatataata ttaaattcta ctctttatac tttaaaacat ttcttaaaaa
      361 taaaatttta ttattatgat aataaactat tgacaaatta ttattgtagt gataaaatgc
      421 attctgttta atctatattt aacaaaggag aattcatgtc aaactatcca aaggccattg
      481 gtccatactc agcttatagg gaagcaaatg gacttttatt tatatcagga caacttccta
      541 tcaaccctgc ttcaggagaa atagaaagct ctgatatcaa agaacaaacc aaacaatctt
      601 taaaaaatat cggtgctatc ttagaagaaa atggtatcag ttatgataaa gtgattaaaa
      661 ccacttgctt tttagctgat attaatgatt ttgtagcatt taatgaaatt tatgctgaat
      721 tttttaaagc tccttatcca gcaagaagtg cttttgcagt aaaagatctg ccaaaaaaag
      781 ctaaagtaga gatagagatc atcgctcaaa aaggataaaa catgctaggt attgtttttt
      841 ctttatttag tgttttttta cttgttttta tgctttataa aaaaatcaat gctcacatgg
      901 cattgctttt aagtggttta cttttacttt ccttagctgc tctttttgga ctttctccac
      961 acattgtcac taaaggttct ttaaatttag gtttttttga tatttttcaa gttttcaatc
     1021 aaaccatgtc aagtacatta gcagggcttg gacttacact tatgactata gcaggttttt
     1081 ctgcttatat ggatcatgta ggggcttctt atgcactttt taaagttttt gaaaaacctt
     1141 taaaagccgt aaaatctcct tatgttttac tcatagttgc ttattttatc gtgcaatttt
     1201 tagttctttt catcccttct cacgcaggct tggcactttt acttatggtt actatgtatc
     1261 ctatacttgt acgctctggt gtttcaaaac tttctgcctt aagtgtgatt gctatttgtc
     1321 aatatatcga tcatgggcct ggaagtggaa atgtgatcat ggcatcaaaa gtagctgaag
     1381 ttgatcctgc aatttatttt gttcattatc aactccctac aaccttgcct atcattatag
     1441 ctgtaggtat tgcgatatat ctttgcaata aattttttga caaaaaagat aattttgtct
     1501 tcaatgcaca agaaattgaa aaagaactaa atgaaaatga aggtaaagaa aaagaactta
     1561 aaaagcctcc tagaatttat gcgattttac ctataattcc tttggtttta atcctaggat
     1621 ttagttccgt gcttgatagc atcttggttt taatgggaat aagtagtgct gaagaagtta
     1681 aagcagttgc tagcactgcc attaaaatga atgttccagt agcaatggtg atttcaactt
     1741 ttgtggctat tatttttgaa atgatacgct ataaaagtat agtagaaact cttaattcta
     1801 ttatgatttt ctttaaagga atgggacatt tatttgttat cacagtttca ctcatcgttt
     1861 gtggtcaagt atttgcaagc ggtcttttat ctgtaggttt tgtagatact ttaatagaat
     1921 tttgcaaaaa tgcaggattt ggagttttgg ctattattat cgccgtttca atcttgcttg
     1981 cagtttgtgc tttcttaatg ggttcaggaa atgcggcatt ttttagcttt gctccactta
     2041 tcccaaatat agcaaaacac tttggagttg aaactatcac catgatagca ccaattcaaa
     2101 tcatgacggg ctttggaaga tgtgttagtc ctattgcacc agcgatttta gctatctcag
     2161 ctattgcaaa agtaagtcct tttgccgtgg ttaaaagaac agctattcct atgcttgtag
     2221 cggctattgt aaatgttatt atgacttata tctatcttta aaaaggagaa aaaatgaact
     2281 caaaaactaa acttattcat tgtggcagag gcgatcaagg cgctgaagta agatcagtca
     2341 atcctacact tatgcgtgca tcaaccatac tttttaaaga tcacgcaact tggcaaaaat
     2401 acagagaatt aagaaaaaca gatcgtgttt taagctatgg ggctagagga acaacaacca
     2461 attttgaact tgaaaaactt atttgcactc tagagggtgg ttatagagca caacttttcc
     2521 caacaggact tgcagcatta gctatggtgc ttttaaacta tgcaagcaaa gatgcacatt
     2581 ttttaatcac tgatgcaatt tatgggcctg taagaacgat ttgcgaatta tttttagaca
     2641 aaatgggagt tgaaattgat tttttaaaag ctgatgcaag tgatgtagaa gaaaaaatca
     2701 aacctaatac caagcttatc ttatgtgaaa gtccaggttc tatactttat gaagtcatag
     2761 atttaccaaa actttgcaaa attgcccatg cgcataatat ccctgtagct attgacaata
     2821 cttattctag tggatatttt ttaaatcctt tagaacttgg agtggatatt tcagttatcg
     2881 ctgctacaaa atatcttagt ggacactctg atgtaaccat gggtatagta gtaatcaacg
     2941 aaaaagaatg gaaaaatttt gacaaacttc cagaagcttt aggctttaca acaagtcctg
     3001 atgatgctta cttagtactt cgtggtatga gaacactaga tgtgagaatg aaagctcatg
     3061 aaaaaagtgc tgatgaaatt gtagagtttt tacaaagtag aaaagaaatt aaaacaattt
     3121 tctatccaaa actcaaatcc cacccaaatc atgaaatttt catgcgtgat cataaaggtg
     3181 caaatggtat gattaccata gaatttacag aaggttatag caaagatgat gctattaaat
     3241 ttgtagataa actagaatac ttttcaattg gtgctagctg gggtggatat gaaagcttag
     3301 ccaccgtaac tactccacct agaactgcaa cagattggag tgcaagagga ccatttgtaa
     3361 gatttcatat aggtcttgaa gatactaaag atttaattgc tgatttaaca caagcttttg
     3421 atagtattaa aaaataagga gataagatga caggaattag cgtatttgat catagattac
     3481 tagcagactc atggagcacg caggaaatgc gtgctatttt ttgcgaacaa aaccgcatac
     3541 aaaaatggct cgatgttgaa gcagctttag caaaagcaca agcaaaactt aaaattatcc
     3601 ctaaaaaagc agctgatgag atcgcaaaaa aagctcatta taaatttatg gatatggact
     3661 ttatctttgc tgaatttaaa aagaccaaac accctttagt tcctactgta agaggattag
     3721 aaaaagcttg cgataataat ttaggcgaat atgtacattt tggagtaacc actcaagata
     3781 tcatcgatac aggactggtt ttacaattta aagaagcaat gactcttgta aaaagtgaat
     3841 taaaagctat cgcaaaagcc ttagcgaaac tagctaaaac ccataaaaac actgctatga
     3901 tgggaagaac tttagcactt caagctttgc ctattacttt tggacataaa gtggctattt
     3961 ggttaagcga acttgagcgt cattttgaaa gaatacttga gcttgaaaaa agactttatg
     4021 taggtagtat agtaggtgct gtaggaacta aagcaagttt aagtgatgag tgcaatgaag
     4081 tagaaaaact cactttagaa aatttaggac ttgatgtgcc taatatttct tggcaacccg
     4141 cacgtgatcg ctttatagag cttggttttg tactaggtaa tatcaacgca acctttaaca
     4201 aaatcgctca tgaaatttta atcctttcgc ataatgaaat tgatgaagtt gctgaacctt
     4261 ttggaaaagg acaagtagga tcaagcacta tgccacacaa aagaaatcct gcagtaagcg
     4321 aaaatgcggt tacaataagc aatgccttta aagcaaattt agccatttta agcgatattg
     4381 aaagacatga acatgaaaga gatggtcaag tttggaaaat ggaatggaag cttttacctg
     4441 aaatgttttt aatgctttct gtggttttag caaatatgaa attcgctctt agtgatttag
     4501 aagtaaaaaa agacaaaatg cttaaaaatt taaatactct taatggtttt gttttagccg
     4561 agcgtgttat gtttgcatta agcgatcatt atggaaaaca acatgcccat gaaattgttt
     4621 atgaaaatgc tatgctaggt atagaaaaac aaaaaacttt taaagaagtt ttacttgcag
     4681 ataaaagagt atctaaggta ttgaaagaaa aagaaattga tgctttactt gatgcaacaa
     4741 cctatgtagg atatgcacca aaacttgtag atgaattttt agcaaaaatc aaaaatagcg
     4801 ctatcttaaa ataggaaaaa tcatgttcta tagtgaaatt ttagcggatt ttattttcaa
     4861 tcttaaatat gaaaatatcc ctaatacagt tgttcaaagg gctaaagagc ttatgcttga
     4921 tagccttgga acagccatag cagcaagcaa agaagaatgt gttttaaatg cttttaaagc
     4981 ttttgaaaat ttaagcacag ataaaaatac tcctatttgg gtaaatgatc aaaaactagt
     5041 tcctatatac gcagctatgc tagatggcat tgcttctcat gcgttagatt ttgacgatac
     5101 gcatacagaa gcgattttgc atgcaagtgc gattttaact ccactttgtt taagttatgg
     5161 ttttcatgtt aacaaagatg caaaaaaaat catcaaagct tttatagtag gctgggaaat
     5221 tgcagctaga gtaggcattg caagcaaagg tacttttcat aagcgtggtt ttcatactac
     5281 tgctattgca ggaatttttg gaagcgtgag tgcaagtgca atcttgctag atcttaacaa
     5341 agaacaaatc attaatgctt taggacttgc aggaagtttt gcaagtgggg ttaatgagtt
     5401 tttatccaat ggatctaatt caaaagtttt acatattgcc aatgctatta aaaacggcat
     5461 tatggtggct cattttgcta aaaacaatat gagtgggcct ttgagtattt ttgaaggtag
     5521 ggataatatc tttaaatgtt ttggcataga agaagaatgc gataaaacag aacttggcaa
     5581 agccttaggt gaaatttggc aaaccatgca agtttcaatc aaaccttatc caagctgtca
     5641 ttttgctcat gggcttattg attgtgccat tgctttaaaa aatgatggtt taaaagctga
     5701 tgaaattaaa agtattcatt gttttgtaga tgaagttcct atttctttta tctgtgatcc
     5761 tttggaagca aaatacactc caaatagtgc ttatgaagct aaattttcca tgcctttttt
     5821 aatggctcta ggattctttg atggcaaaat cactcttgat tcttatgaaa atttaaagcg
     5881 tgaagaagta ctagaatttg ctaaaaaaat cagttacgaa aaaagaaaat ctcaaggctt
     5941 tccaaaatat tttccagggc atttagaagc cagtttgcaa gatggacgca taatccaaaa
     6001 agatgttttt atcaataaag gtaattttga taatccacta agttttgaag aattaaaagc
     6061 taaattttta gccaatgcac aaatttacct tgataatgct aaagctaaca aaattctaga
     6121 tcaaatcatc aatctagaaa atttaaacca cttttctttt taaatattta tccttctttt
     6181 tacaagaagg ataatttcat tacacttttt tattataata tttattatta atttaggaat
     6241 tacaatgact ttaaacgagt taaaagatgg acaaaaagct attattgtca atttaaacgc
     6301 tcacaaagaa ctcaaaaata gacttttaag ctttggattt attaaaaata aaaacttgaa
     6361 aaaaattcac tcctctttaa aaaatgccac cataatggta gaacttgata caagttgtgt
     6421 tatcctaaga tctgatgaag ctaaaaccat agaagtgaat cttatatgaa aaaaatcaaa
     6481 atagcccttg taggtcagcc taatgtaggc aaaagtcttc ttattaatgc gctttgcaaa
     6541 gccaatatga aagtaggaaa ttttagcgga gttactatag aaaaagcaag cgcaaaaact
     6601 ttttataaaa actatgaatt tgaagtcatt gatttgccag gaacttattc tttagatgga
     6661 tatagcgaag aagaaaaaat cacacgtcat tttttaaatc aaaatgacta tgatgttatt
     6721 gttaatgttt tagatgctac caatttagaa cgtaatctta tccttagtgc agaactttta
     6781 agccttaata aaaaaatgct tttagcttta aatatgtgtg atgaagccaa aaaagaaggt
     6841 atagagcttg acacttctgt tttaagccaa gaatttcaaa gtcaagttgt tgaaatttca
     6901 gcaaaaacaa aagaaaattt agaacttttg ctgcaaaaaa ttattatttt atttgaaagt
     6961 aaatttattc caagatccca attttacact ccgctttgcg aaaaaagtcc agaaaaagaa
     7021 gatttattat attttattaa tgaactttca aaaaaaatta ttacacacaa aaaagaagaa
     7081 agaaatttaa ccaaaaaaat cgatgccttg cttatccata aattctttgg cttacctata
     7141 tttttatttt taatgtggct tttatttcaa ctcaccttta gcttagggca aattcctatg
     7201 gattatatag aatcgggctt taatacctta ggtgaatttg ttaaaaacaa tatttctaat
     7261 acctttatcg cttcagcttt ggctgatggg attatcgcag gtgttggtgc tgtgatactt
     7321 tttttgccta atataatgat tttattttta ggcatagctc ttttagaaac cacaggctat
     7381 atgtcaagag tagctttttt acttgatggg attttacata aatttggttt gcatggtaaa
     7441 agttttattc cactaatcac tggttttggt tgttcagtac ctgcttttat ggctacacgc
     7501 actcttaaga acaaaagaga tagactttta actctttttg tgatcaattt tatgagttgc
     7561 ggggcaagac ttcctgtata tgtgcttttt atcggtgctt tttttccaag tgaaaaagca
     7621 ggaaattatc tttttggaat ttatatttta ggtgcgattt taggactttg tgctgcaaaa
     7681 tttttaagaa tgacagcatt tcgtggactt gatgaacctt ttgttatgga aatgccaaaa
     7741 tatcgtatgc caaattggca tttagtttgg tttatggttt ataataaagc caaaatgtat
     7801 cttaaaaaag caggaacttt catacttttg gcctctttgc tcatatggtt tgctagcaat
     7861 tttccaaaaa gtgaagaaaa tttaaatgat tttaatgctc aagaaagagc tatagaacaa
     7921 agttatttag gacaatttgg caaaggcata gaacctattt ttaaacccct tgagttagat
     7981 tggaaattaa gcgtatcttt aatcagtggt ttggctgcta aagaagtgat gatctcaact
     8041 atgggcgtgc tttattcact aggaaaagat gtagatgaaa caaataatga tttaaaagga
     8101 attatcgcta aaaatatacc cataccaagt gcagtggctt ttattttatt tgtaatgatt
     8161 tataatccct gctttgcagc aactatagtt ttttcaaaag aaagtggaaa gctaaaatac
     8221 actctctttc tctttctttt tacctgcaca agtgcttata tagtagcttt tataggactt
     8281 tatatcgcta aaattttatt aaactaactt gcttttaatg atgaaatttt agcgatatta
     8341 tcttcaaaag cttttaaaat gctataagca acaccttcaa aatcaagtcc gccgcaaaga
     8401 tagattaaag tcatacgaaa agatttgctc acatcaagct ttggtttttc agcgttcata
     8461 tttaacttaa aatcataagg acttgcatgt ttaaaagcat aattttttgc cgcaattaaa
     8521 aaatcattct tatcttttaa aaatgcgcct ttaaccaaaa taaagcttat ctcaagatat
     8581 ttccaaaaat cttttgaaag cataggattt tcatcaaaat tttgttctat aaaagcatag
     8641 tttttttcaa aggatttttt ataattttct acaagcaaag cgcctaattt atttttagct
     8701 atattttgta aaataagttt tatattgctt tcaaattcaa aatctatttg ttctaaaatt
     8761 ttaatttgct cttctagaaa aaattcttgt tttaactctt cattacaaag tttagcgtaa
     8821 gaaaaaatat ttgccatagg cttttcataa ttcccaaact catcccaaaa atttttctca
     8881 ctacaggcta tacaaccatg tcctgcggcc actggccaag aagttttagc attaaatttc
     8941 actttaggac agttattgta agtataaggt cctttacaac ctaccttaaa taaacaagct
     9001 ccattctttg cagcctcatc gtcaaaatgt tcagcaaaaa tcccactttc aaattttgcc
     9061 tttctttcac acatatcatg caggcattta ccataagccc aaacaggacg attttgctca
     9121 tcaagttcag gtaaaactcc aaataaagca aaaaaactta aagtcgcaat gatatttata
     9181 tcacttggag gacaacctgg gatatttact actttctgac ttaaaacttc actaatacca
     9241 caagttttac taggatttgg ataagcagcc tgaataccac cataacttga acaagtaccc
     9301 actgcaaaga tagccttggc tttagcggct agtttttcta aaatttcata gccactctct
     9361 ccttgtgctc ctatagtaag aaaaaaggta tcaatggctg caacaccacc ttcaaccgct
     9421 aaaataaaat cttcttctaa aacatgctct aaaagctctt cagctttagt gccatttgct
     9481 gccattaaag tttcatgata ttctaaagaa aaaaaatcaa aaataagctc atcaaaactt
     9541 ggcaactcag aacgcaacaa actctcacta caccctgtac attcacaaag atgaagccat
     9601 actaactttg ttttaggtgc gatttgaaaa aatctttgag caagagctgg aatttcattg
     9661 cctaaagata aatgcttagc aagaattttt acactttctt cattgacaat cttatcctct
     9721 tttaaaatgg aattttcaag ttttttaatg cgaccttcaa gtatattttt taattcttca
     9781 ttgctaagct ttgtcatttt ttatcctttt tgattatccc aacaaagaac agtttgccct
     9841 tcttcatttt tttcaacatc acccataccc atgatgttat atcctgcatc gacataatgt
     9901 acttcacctg taacaccatt tgccaaatcg ctaagtaaat acatagccga atttcctaca
     9961 tcttctatac tcacattgcg ttttaaagga gaattgattt cattgtattt taaaatcatt
    10021 ctaaaatctc ctattccact tgctgctaaa gttttaatag gacctgctga aatagcatta
    10081 acacgaattc cttttacccc taaatctctt gctaaataac gcacagaact ttcaagtgca
    10141 gcttttgcta cacccataac attataatga ggcacatatt taaccccacc aagataactt
    10201 aaagtcaaaa tcgaaccctt atcttttaaa ataggtaaaa ccgcacgtgt taaagaaagt
    10261 aaagaataca cagaagtttg catagctata tcaaaagctt cttttgaagt ttctaaaaaa
    10321 gaattttcta aagcctcttt tggagcaaaa gcaaccgcat gtaccacaaa atcaatctca
    10381 cctaaatctt ttttgatttt ttcagcgata gaatctaaat gctcattatt gtttacatca
    10441 agctcgtaaa caaaattaga attaaactct tgtgctatag gttctacgcg tttttttaaa
    10501 gcatcattta aaaaagtaaa agcaagctcg gctccttgat caaaacatgc ttttgctatg
    10561 ccataagcga tagatttatt atttgcaacc cctacaataa gacctttttt acccttcata
    10621 atcatctttt atcctttgat taattttata aaattttcta cttttaaagc tgcagagcct
    10681 atcaaaactc caccacaatg atttacactt aaaatttctt taatattatt ttcattcaca
    10741 cttccaccat aaagcaaagg tgctttggtt aaactcgcta aaaattcaag cactttagca
    10801 atatctgtag cttgtgcact cactcccgtt cctatagaat aaataggctc ataagcgatg
    10861 atgagttttt cataatttaa atcaataact tcaagttgtt tttttaaaaa ctctaaagtc
    10921 ttgcctgaat tttttgtatc taaattttca cctatacaaa aaacaatttt ataaccatgc
    10981 tctttagcaa aatcaaattt agccttaata aattcttcat ctcctaaagc tcttctttca
    11041 gaatgcccga ttaaaacaca tttgatccca aattcgtcca aatgttcttt tccaagctcg
    11101 cctgtaaaag ctccattaac acaaggataa aaattttgcg ctccttgtat gaagttattt
    11161 tcattttcta aaaatactac gctaggtggg aaaacgataa tatcatcgca ttttgccccc
    11221 atagttttat ttaaaatttc agcataaatt ttaaagcttg cccttgtgtg attgcatttt
    11281 aaatttgcag caaagatcat tcattttcct tagatcttaa agcttttaca cctggaagtt
    11341 ctttaccctc tataagttca agagaagcac cacctccagt ggaaataaaa gtcatttcat
    11401 ctgcatcacc tgcacgcgca accacatcag ccgtatcacc gcctccaaca acagaagttg
    11461 catgtccttc gctgatataa tgactcattt taatgctacc ttttgaaaat ttatcaattt
    11521 caaaaacacc cataggtcca ttccaccaaa tcgtttgcgc atcagaaatc acctccttaa
    11581 aaagtctcac actcgcaggt cctatatcta aacccatcca accatttgga atttcttgcg
    11641 ctggaacaaa tttcatcggc gcatcttgtg agcacgcagg agcggctaca acgtctactg
    11701 gaagataaat tttcactcct aaatttttac ccttggtaag aattttatta gcttcttcta
    11761 aaagttcttc ttctaaaagt gaatttccta tatcataacc taaagctttt aaaaaagtaa
    11821 atgccatacc tccgcctatg attaatttat ctacctttgg taataaattt gtcaatgctt
    11881 gaagttttcc acttaccttt gaacctccaa caacagcgac aaaaggacgt gctggatgtt
    11941 tgataagatt gcttgcaaaa tcaatttctt tttggagtaa aaatcctgcg cctttgtgtt
    12001 tttcatcaaa aaatttagta atcgcctcta cactagaatg tgctctatgg catactccaa
    12061 aagcatcatt gatataaact tgaaccatag aagcaagttc tttggctaaa ttttcatcat
    12121 ttttagtttc gcctttttca aaacgcaaat tttcaagaag taaaatttca cccgctttta
    12181 aattcatagc tttggttttt gcatcttcgc cgataacatc ttttgccata ataatttctt
    12241 tatctaaaag tctagcaaga cgcttagcca caggttctaa agaatattta gagctaattt
    12301 cttttggacg ccctaaatga gaggctaaaa tcacactaca gccattatcc aaacaatatc
    12361 ttatcgtagg aatagctgat cttatgcgtc tatcatcagt gatatttaaa aaatcatctt
    12421 gaggaacatt aaaatcacat cttataaaaa cttttttctt agctaaatca atgtctttta
    12481 tagaaataat atcactcatg attaagcctt atttgcaata tatactgcca tatctactag
    12541 acgacttgaa tagccccatt cattatcata ccaagcaatt accttgataa aatcatccgc
    12601 aatcacttga gttaaatcac ttgctacaat agctccataa gaacaagtga taaaatcgct
    12661 tgaaactctt tcttcatcat ctaccattaa aatgcctttt aaatttgtag ttgcagcttt
    12721 tctaaaagct tcattgattt catctttgct gactttacgg cttagttgtg cagttaaatc
    12781 cacgcttgat acatcaatca ctggcacacg catactttgt ccatgaagct tgccattaag
    12841 ttcaggcata acaagtttca tagcttttgc tgcgcctgta gaagttggaa tgatattttg
    12901 cgctgcagca cgagaacggc gtttatcttt agctttagca tcaataatac tttgtccatt
    12961 tgtataagca tgtattgttg tcataagtcc tttttctatg ccaaaattat cttgtaaaac
    13021 acgacaaaca ggacctaaac aatttgttgt acaacttgca ttagaaataa tgctttcacc
    13081 cttgtaaagt tctgaattta ctcctaaaac ataagtagga gtatcatctt ttgcaggagc
    13141 actcatgatc actttttgta ctcccatatc tataaattct tgacattttg ccatagttaa
    13201 atgcgctcct gtgcactcta aaacaatttg tgcgccgtgt tttgcaaagt caagatcttt
    13261 tacattgcga cttttaaata ctttgatttt tttaccattt accactaaat catcgccttc
    13321 actatcaaca ctgcctttaa attcaccatg tactgtatcg tatttaaaaa ggtattttgt
    13381 aagttcaata tccgtagtat catttatcgc cacaagctca atatcatttc tttctaagat
    13441 gattcttgca acacatctgc ctatgcgtcc aaaaccattt atagcaactt ttacagccat
    13501 ttaatttcct tttgcaaaat ataatgctaa tattctacaa aaaaaaggtt aaaattttaa
    13561 tgaagatagc actttttggt ggcagttttg atccaccaca taatggacac aatagcgttg
    13621 ttttagaggc tttggaaaaa ttagatattg ataagcttat tattatgcct acttatatca
    13681 acccttttaa acaaaacttt agtgctgatg aaaagcaaag attcttatgg gttaaaaaac
    13741 tttggggaca ttttccaaaa gttgaaattt gtgattttga aaccaagcaa aaacgccctg
    13801 ttcctagtat agaaagtgtt aaatatcttt ataagcttta taatcctagc aaattttatc
    13861 ttttaattgg cgcagatcat ttagagaaac ttcatctttg gcatgatttt gaaaaattaa
    13921 attctttagt agaatttgtt attgctaatc gcaatgatat agaaattcct aaaaatttta
    13981 aagatttaaa aactgataaa aaaatcgcat cttctttcat acgcaacact ttaaatataa
    14041 atgaagtttg tgaagaaatt aaagatgaag taaaaaaata ttatgaaaaa ttacaaaaaa
    14101 attgatacaa tttcaaaaat taaaggaaaa gaatgcaaga aagaatagat ttaatcgtta
    14161 aaattttaga tgaaaaaaaa gctgaagata tcaaaaccat tgacatgagc gagcaagaat
    14221 actttgtaaa atatgtcatt atcgcagcta ctttaggaga aagacacgct ctatccttga
    14281 tcgatgagct taaaacacaa cttaaagcca aaggtgagga atttttaaac atagatagta
    14341 gcgaagaatg gagtgtgatt gatcttggtg atattttaat ccatctttta acaccagaac
    14401 acagaggaat ttataatata gaagaattac tagaaaatct taaaaaaggt agggtttaaa
    14461 aaggctaaat ttaattagcc ttttaatttt tagagattat caatatattc tttaatttct
    14521 tttttgattt t
//
LOCUS       DAEBKH010000025        14259 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.025, whole genome shotgun sequence.
ACCESSION   DAEBKH010000025 DAEBKH010000000
VERSION     DAEBKH010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14259
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.025"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..968
                     /gene="pyk"
                     /locus_tag="KIL20_000546"
     CDS             <1..968
                     /gene="pyk"
                     /locus_tag="KIL20_000546"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HBD2720599.1"
                     /translation="GINFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDI
                     DEVREILAQNNAKISIFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNI
                     QKEIIQKANNASKPVITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAV
                     GIDPANAVDIMCQTIIETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSL
                     TSSGKSAIKIARYRPNIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSV
                     RSSVEKGFMDEDKCYLLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            1066..1701
                     /locus_tag="KIL20_000547"
     CDS             1066..1701
                     /locus_tag="KIL20_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720600.1"
                     /translation="MQVNTFSNIASMAQTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIGSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSGKNPLDMNTDELQQLVSEDGFFGVENTANRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQDTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(1732..4194)
                     /gene="pflB"
                     /locus_tag="KIL20_000548"
     CDS             complement(1732..4194)
                     /gene="pflB"
                     /locus_tag="KIL20_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HBD2720601.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSDSGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVVMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLARLQNSYDNDKDRYKILDAYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDSA
                     DAGVYLNTSKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDTTKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPSIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(4204..5439)
                     /gene="serS"
                     /locus_tag="KIL20_000549"
     CDS             complement(4204..5439)
                     /gene="serS"
                     /locus_tag="KIL20_000549"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HBD2720602.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKTA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSVKVNALENELEEIAHAIPN
                     IPDECVPVGEDEDENVELKKVLNPPSFDFTPKEHFELGESLNWLDFVRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSHGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDALKKYF"
     gene            complement(5450..6409)
                     /gene="trpS"
                     /locus_tag="KIL20_000550"
     CDS             complement(5450..6409)
                     /gene="trpS"
                     /locus_tag="KIL20_000550"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HBD2720603.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTQIVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPEAKVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKMYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(6406..6903)
                     /locus_tag="KIL20_000551"
     CDS             complement(6406..6903)
                     /locus_tag="KIL20_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HBD2720604.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKISEIFAQKGEIFFREQEQKMADFFSSCEKTCIATGGGFVNVSNLEKVGFCIYLKAS
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYELKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(6890..8272)
                     /gene="der"
                     /locus_tag="KIL20_000552"
     CDS             complement(6890..8272)
                     /gene="der"
                     /locus_tag="KIL20_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HBD2720605.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVVNKVDNKKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEHYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELHLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRSHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            8374..9306
                     /locus_tag="KIL20_000553"
     CDS             8374..9306
                     /locus_tag="KIL20_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HBD2720606.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIVYLLKRSKAHKEGGHFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFGGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLTAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            9303..10118
                     /gene="kdsA"
                     /locus_tag="KIL20_000554"
     CDS             9303..10118
                     /gene="kdsA"
                     /locus_tag="KIL20_000554"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HBD2720607.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQAAAVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKVNIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQKNGVF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            10115..10579
                     /locus_tag="KIL20_000555"
     CDS             10115..10579
                     /locus_tag="KIL20_000555"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HBD2720608.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            10579..10977
                     /gene="nusB"
                     /locus_tag="KIL20_000556"
     CDS             10579..10977
                     /gene="nusB"
                     /locus_tag="KIL20_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HBD2720609.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYHGILDNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            10974..11654
                     /gene="pyrF"
                     /locus_tag="KIL20_000557"
     CDS             10974..11654
                     /gene="pyrF"
                     /locus_tag="KIL20_000557"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HBD2720610.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKIHDIPNTMADACEEISKLGVDMINIHASAGKIAMQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKI
                     IKEHTQRNFLTLTPGIRPFGEKNDDQKRVANLTMARENLSDFIVVGRPIYKDNNPRKI
                     CEKILQEI"
     gene            11709..12602
                     /gene="msrP"
                     /locus_tag="KIL20_000558"
     CDS             11709..12602
                     /gene="msrP"
                     /locus_tag="KIL20_000558"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HBD2720611.1"
                     /translation="MIITPENLYKKRRDFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKKKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFSLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
     gene            12602..13174
                     /locus_tag="KIL20_000559"
     CDS             12602..13174
                     /locus_tag="KIL20_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HBD2720612.1"
                     /translation="MRTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFAL
                     IFLNLSLLFSLLKFKKTKNYPKILGIFAAFWAILHFLNYFIFDRNAQISRLFDDISHR
                     LLEASGFIAFLIIFLMLLSSFEIFKKLSKIRKLGYLCLVLASYHYFLTPKVPMFWEWS
                     ALIVALFYFIVRYTKTLKKLKSNNLTFIKT"
     gene            complement(13139..>14259)
                     /locus_tag="KIL20_000560"
     CDS             complement(13139..>14259)
                     /locus_tag="KIL20_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD2720613.1"
                     /translation="EQIIFLALLKEEYALSNESSISREMNSLLSLISENDLERHKNKK
                     LLQENAPLLNLIEYDEYLNAFGDISKSFFIIDEILQRIINFEPKQSKKIKIESVLKDQ
                     DIFELIEPSTDINDIIMPENTKELLENILKQQDKKVLERLHSWGIKSNKNIEAKIIFY
                     GPAGTGKTMSALAMAKSMKKSVLSFDCSKILSKWVGESEQNVRKIFDTYKNIVQTCKQ
                     SPILLLNEADQFLSTRVDGSSGSDKMHNQMQNIFLEQIERFSGVIIATTNFLESLDSA
                     FSRRFDYKIEFKKPDFKDRLKIWEKFLPKKALFEKDFDINILSNYELSGAQILMVVKN
                     TALKVAVSQDGVFKMQDFIESIQKELNSSFDKSKIVGF"
BASE COUNT         4851 a         2375 c         2069 g         4964 t
ORIGIN      
        1 aaggtattaa ttttccgaat actaaaatca atattgatgt tattacacaa aaagataaaa
       61 atgatttact ttggggtata aaaaatgaag tagatttttt agcaatatct ttcgtacaaa
      121 atgcacacga tattgatgaa gttcgtgaaa ttttagcaca aaataacgca aaaatatcta
      181 tttttgcaaa aattgaaaaa tttgatgcag tagaaaatat tgatgagatt attaaatcta
      241 gcgatggcat aatggttgca agaggagact taggtattga ggtaccttat tataaagttc
      301 ctaatatcca aaaagaaatt atacaaaaag caaacaatgc ctctaagcct gttattactg
      361 cgactcagat gcttttttca ttagccaaaa gcaaaaccgc cacaagagct gaaatttcag
      421 atgttgcaaa tgctgtttta gatggaacag atgcagtaat gctaagtgaa gaaagcgccg
      481 ttggtataga tcctgcaaac gctgttgata taatgtgcca aactataata gaaacagaaa
      541 aacgctatcc atataacaaa tttaatgatt ttaatgattt agacaataca gataaaatca
      601 tgcgttcttc agctcatctt gcaacagatc ttaacgctga tgctattttt tctttaacaa
      661 gtagtggaaa atctgctatt aagattgcga gatatcgtcc aaatatagaa atcatagcag
      721 tagggcattc tgaaaaaacc ttaaactctt taagtatagt ttggggagtt aatcctgcga
      781 tcttggttaa caaaagtaat gaacttacag aattattaaa agactctgta agatcaagtg
      841 ttgaaaaagg ttttatggat gaagacaaat gctatcttct aactgcaggc tttccaacag
      901 gagtagaagg tactagcaat cttatccgca ttctcaataa agagcaaatt gcttattatc
      961 tacaataaaa cattaaattc ctttgaaaat aaggaattta atgtccttat aaatttttta
     1021 agtcaaaagt cgatataaat taaagcctca cacaaaggag caaatatgca agtgaatact
     1081 ttttcaaata tcgctagcat ggcacaaaca caagttagca ataagaaggc agatgatgct
     1141 aaggaaaaca caaaagacaa aaatgttcaa agtgctaatt ctagcaagga tgtagataaa
     1201 aatacccttg aaaaattaaa tgcacttggt ggaaagggca ttacacaaat ttacctagtt
     1261 cagtttcaac agcaaacaat gaatgctgta ataggttcga gcaatgccca aactggacta
     1321 gatagtcttt taaatggtgc caatttagat actgcgaaat ctatacttac aaatattgat
     1381 tttgcatcct taggctacag tggcaaaaat ccacttgata tgaatacaga tgaacttcaa
     1441 caacttgtaa gtgaagatgg tttttttgga gtggaaaata cagccaatcg catcgcggat
     1501 tttgttatta aaggcggtgg cgacgatgtt gaaaaattga aaaaaggtct tgaaggtatg
     1561 aaaaaaggat ttgagcaagc agaaaaaatg tggggtggag aacttcctca aatcagtcaa
     1621 gatacaatag atgcggcact taaaaaagtt agcgatcgca ttgatgaact aggcggaaaa
     1681 actctagatc ttcaagctta actaaaaatg cttagaaatt tctaagcatt tttagttgtt
     1741 attaatatca aaagtaaaaa attcactctt aaaattatta ggtaaagttt tatactgaga
     1801 tatcgcagct tcatagttct ttacttcttg atacaacata ccaagagctg ctttactttc
     1861 tttgttattt ttatctgtaa gtttagaaag ctgcaaaagc gctatagctg aatttggatt
     1921 atttgcacct acggctgcta cggctgctaa aaataaagtt ttagtatctt tagctccata
     1981 atcatcaatc aaagaattgt aaagcgcata agcctcctcg tattgctgtg caaaaatatc
     2041 caaataagct aaagtttgca aaataccctc atcttttgct cctgaaacat taatcaactc
     2101 tttaaatttc tgtctttcta aatttaaaag ccctgcaata tgcattaaat taacataaaa
     2161 ttccctagcg atacttggcc caccaaaaac actacgataa tcaagtttta aatttttaaa
     2221 atgaatttga gcattttgag catattcttt aatatttaaa tttgaattta aagaattaaa
     2281 atacaaaata tttgccaaaa tatcttcagg caactctgaa cgcaatttag caattttcac
     2341 atctacttga ttattaaggt tattattttt agcaacaata gcttcaaaaa tcaaactcaa
     2401 aggcgtgtct ttttttgttt catctaaata aggaagcata gaaatataat tattattaac
     2461 taaaaataac atactttttt gcatattagc tttaaaatta gaatcagcag ctatattatc
     2521 aagaatttca ttgtaaagtt tagttgtatc aatatcaatt aattttgcac aaaacatagc
     2581 aaaagcacct gctaagtaat ttttaggatt aagatgatat gaacttgaaa aatgcttata
     2641 agcaagttca taattttgca tttgggcata agttaaagcc aaattataat gtaaaatact
     2701 atgttctgga taatccttga taagtttttg aaattcttgg ttagcaaggc gtaacttctg
     2761 atttaatgca tagttaataa tattggcaat ttttacattg gtagatgaaa gagccttgct
     2821 tgtattaaga taaactcccg catcagcact atcatcaacg aaatctgtaa cattagcttt
     2881 tttaatatat aaagcagcct gcttactatc aaaaacttga taaggcgcaa aataaaaaag
     2941 caaatcgaat tgatcttttt gtttttttaa caaatctttt gaaaaagaat tttgagcaac
     3001 tgctatatta aaaagatcct tatttaaacg aacttgaatt ttataagcat ctaaaatctt
     3061 atatctatct ttatcattat cataagaatt ttgcaagcgc gctaacatat cttgataatt
     3121 tcctgtttta atatcaacca atgttaaagc cgccaaactt tgattaaaat ctctttcaat
     3181 tttcatcgct gtacttaaag cgactttagc tttagcatat tctcctattc tagcgtataa
     3241 aagacctaaa gataaactag attcaaaatt gccttgagaa tttaattgct gtatagcctt
     3301 ggaatcaaag tccatttttg cataaatttt agcagacaaa tactttgcaa catcagaata
     3361 cggctccaca tctgttcttt gtaacatttg taaagcctca gggtaatatc ctttgtaata
     3421 attaatcaag cttaaataat aatcatataa ttttgatttt ccttcttttg gaagatacac
     3481 ttgagctaaa tcaatataat atctaaattt ttccttatca ttaagcttta aagcacaaac
     3541 agcagcattg atagcagcta cactttgatt ttctccattg gctatagctt tcttgaagct
     3601 ttcaaaagct tcttggaatt tattctcatt catttgagaa acgcctaaat tataattaga
     3661 taaagattcg ttatatacgg caacttgctc ataaactttt aaagcctgtt caacctcacc
     3721 ctttaaatat aaagcatttg ctttttggat cataccatca attctttgca tatcattgta
     3781 tttatatgat tcatcaggca taacaacagg ttgttctaaa ggcttagaag ctataatatc
     3841 tggtttaatt tttccttcac taaaagttaa ataaaaaagt gtaaaaacta aaatacaaat
     3901 aatccccaaa gataaaccca caagagacat aaacttacga tctttatacc aaggcgtagg
     3961 ctcttgactt tcaacttctt caaaagttga tacatcttca ggcgcacttt ctcttgtaaa
     4021 tttaaaacca ctatcactat tttcttgagg taattcttct ggcaatgatg caaattcttc
     4081 atcttctgga gcttgcccct cttgcccttt aaatccctct aaactctcat caagtcttgg
     4141 ttgatttaag ccatcttcgg gtttttctag tattatatct tcttgttcag ccatctatac
     4201 tctttaaaaa tattttttca aagcatcagg aatatgaatt tttccttctt tatcttgata
     4261 attttccata atcgctacca aggttcttcc tactgccaaa gatgagccat taagagtgtg
     4321 aacgagttca ttttttcctt gttcattttt atagcgaatt ttagcacgtc ttgcttgaaa
     4381 atcacgacaa tttgaaaccg agctaatctc acgatattta ttttgtcctg gaagccacac
     4441 ttcaagatcc acagtttttg ctgcactaaa acccaaatct ccagtgcaaa gcatcaaatg
     4501 tctatgtgct aaacctaaag aactcagcaa atcacttgca cactcaagca tttcattaaa
     4561 cacactatca ctttgctcag gtttagtgat acttacaagc tctacttttt caaactggtg
     4621 ttgtctgata atacctcttg tatcacgccc tgcactacct gcttcttttc taaaacaagc
     4681 gctataacaa gtcattttta taggtaaagt ttcactcgct aaaatttctc cactataaag
     4741 attggttact ggaatttcag aagttgagat taaatacaaa tcctcatcat ctaccttata
     4801 catatcttct ttaaattttg gcaactgacc cgtcccaaac atagtagcac catttaccaa
     4861 aaaaggtaca ttaacaaact caaatccatg acttctatta aaatctatca tataatttac
     4921 caaagcacgg cttaataaag ctccttcgtt cttaagcaca caaaaacggc tttgtgaaat
     4981 ttttacccca cgcacaaaat caagccaatt taaactctcg cctaattcaa aatgttcttt
     5041 tggagtaaaa tcaaagctag gcggatttaa tactttttta agctccacat tttcatcttc
     5101 atcttcaccc acaggcacac attcatcagg aatatttggg atggcatgag cgatttcttc
     5161 aagctcattt tctaaagcat ttactttaac gctttgctca ttaattttgc ttttattttc
     5221 gcttaatttt gcttttaaac tttctttatc ttcggctgta gcaagctctt tactgaattt
     5281 attttgaaaa gcttgaaatt cttctaaagc tgttttttct ttttttaaac ttgcaaaaag
     5341 ttcagcaagt ttttttaaga tattttcatc aactttttta ttttttaact ttttagccac
     5401 ttcatcaaaa ttattttgca aattttttaa atctagcatt ttctactcct taaagtccga
     5461 ttttttcata aattttttgc attttttctt gggcgatttt tcttgctttt gtcgcaccaa
     5521 aatccaaaat ttctttcaaa tgtgaaggct tttctaaaag ctcattgtat ttttctctcg
     5581 cttctttaaa ataagcattt acaagctcgt ttaaatacat tttaaaatgt ccataaccct
     5641 caccaccttt ttcatagcgt atttgtaatt ctttttgccc tgattcatct aaaaaaagct
     5701 ttgcgatttt aaaaatattg cagttttcat gatcttttgg atcttctaaa gcggtgctat
     5761 ctgtaactat ggaagaaatt tgttttttta aggttttttc actgctaaaa atatctatag
     5821 tattttgata agatttactc atttttgccc catcggtgcc tacaactaca gctacttctt
     5881 cattaacttt agcctctgga agggtaaaaa tttcacccca ttcattatta acttttaaag
     5941 caatatcgcg tgcgatttca acatgctgga tttgatcttt tcctacaggg acaatttgtg
     6001 tatcaaaaag caaaatatca gctgccatta aaacaggata agaaaaaagc ccatgtgaag
     6061 cactaagccc cttagcaact ttatccttgt aactatgcgc acgctctaat aaacccatag
     6121 gagtaaattg cgataaaatc caataaagct ccataacttc cttaacgtca ctttgcaacc
     6181 aaaaaacgct tttttgagga tctataccaa ggcttaaaaa agccgcagca gcttttaagg
     6241 aattttgttt aagtttttct ccatcttgag aagaagtcat ggcatgataa ttagcaataa
     6301 acataaacat ttggcttttt tcttgtgcat ctaccatttg cttaatcgca ccaaaataat
     6361 tacctatatg caaatcgcca cttggctgaa ggcctgttaa tactctcatt ttatcacctt
     6421 tttaatctcg cttaaaagct catctatatt tttattttct atatttaaaa taaaatttgc
     6481 ctttagttca tacttgctta aacgctcatt atataatttt tttgctttaa tttcatcata
     6541 aaataaaggt cttttagaaa tttcatcttt gtctaaacgc ttttttaaat attcaaaact
     6601 tgcttttaaa taaatacaaa aacctacttt ttctaaattt gaaacattaa caaaaccccc
     6661 gcctgtagca atacaagttt tctcacaaga actaaaaaaa tcagccattt tttgctcttg
     6721 ttctctaaaa aaaatctcgc ctttttgtgc gaaaatttca ctgatttttt gattaaattt
     6781 ttgttctatt aaaaaatcac tatctaaaaa aacaagatct aaatccttag ccaaagctct
     6841 tgctaaagtg ctttttccag aacccataaa tcctataaaa acgatatttt tagctttcat
     6901 cattttcttt actgcccttt ttacgcgaag caatcactaa aggcacacct tcgaaattaa
     6961 attcttttct gatttgattt tgtaaataac gcttatagct aaaatgcaag gccttaggac
     7021 gattcataat aagcgcaatt tttggcggtg ctaagtcgta ttgtactgca taataaattt
     7081 taaccaattt cccataatca tgcggcaaag gatgtgatct tgtggcattt tctatcagag
     7141 tattaagctt agaagtttgg attttttgag tgaaattctc aaaaatttgc aaaattttat
     7201 cgagtaaaac atgcaccctt tttccactta aagccgatac gctaatcaca ggtgcgtaag
     7261 ctagaaattt aaaacgatca agatgcaatt cttttacagt tttatcaaaa tccatctcac
     7321 ttttatccca tttatttaaa acaataatca cacccaaata atgcttagcc acaagcccag
     7381 caatgcgttc atcaagttcg ttaaagccct catgcgcatc taaaaccaaa agtgctattt
     7441 gagaatgaga taaaattttt tccgtgcgat ttagggcaaa gcgttcgagt ccttgaattt
     7501 tacccctttt tctaatacct gcagtatcaa caaattctat cactttatct ttatgaacta
     7561 cactttcatt aacaggatct atagtagttc ctgcgataga acttacaaca ctgcgttctt
     7621 gtttaaccaa agcatttaaa agacttgatt ttccaacatt tacacgccct acaataccca
     7681 ctctgatatg attttgatcg acttctttaa attgaaattc ttttccttct tcataatgct
     7741 ctaaaaaatc ttctaaattt tcttcttcat cagggattaa aaactcttca tgtaaaaatt
     7801 tttcaagcca ttcataaagt tcatctaagc ctacattatg ggttactgaa agattgaaga
     7861 tttcctttac tccaaaattt gcaaactccc aagccctttc ttcatctttt ttattatcta
     7921 ctttattaac cactaaggct ataggttttc caagtttttt taaagaataa aaaaactgtc
     7981 tatcctcatc atcaggcgct aatttcccat caactagata aagtatgata tcgctttctt
     8041 tagctacttt taaagtgttt tttttcacat ttttaaaaag ttcatcactt tcatcaagcc
     8101 ctccactatc aataagcatg gctttttttg aatgaatatg aatttgcgtt ttatttgtat
     8161 ctctagttgt acctgaaata tcacttgtaa tagctattct ttgtcttgcc attctattaa
     8221 aaagacttga ttttccaaca tttggcttgc ctataagtat gatgctttgc atttttttcc
     8281 tagaaaatta tatttttaaa attatataaa atttggctta atattaagca aaaaaagact
     8341 agaattagcc cagattttag tcaaggaaaa aaaatgctaa aagtaatcaa gcataattta
     8401 ggaatttatt tcatgatttt agcatgtttg gattttgcac ttatgggagc ttgtgcaaaa
     8461 attcttagca aggaaatgag ttctatagaa attatgtttt ttagaaatat cataggaatt
     8521 tttttcatag tctatctttt aaaacgatct aaggcacata aagaaggggg acatttttgg
     8581 ctcttggtat ttcgtggagt agtaggcacg ctttcactat atatgttttt ctataatgtt
     8641 tcaaatatta cactaggtgg agcttttgct tttcaaaaaa ctgctcctat ttttattact
     8701 ttaatagctt ttgttgtttt taaagaaaat attggcatca aaggctggat aggaatttta
     8761 atagcatttg gtggagtgct tttaatcgct caaccttggg ctcataattt aaatcattca
     8821 ggctttgatt taaaaaattc agttataggt atcacgagtg gatttttagc cgctttagct
     8881 cttacaagtg taagagaact tagaaaatct tacactacag aacaaattgc cttttctttt
     8941 atccttttag gaaccttaat gcctttaatt tctatgatca gtgctgaatt ttttgaacca
     9001 cagcatcttg attctttaca tttagatttc attctagcac cttttgtgat gccaagtctt
     9061 acagcttggc ttatcattgc cattatggga actttaggca ccatttatca aattcacgtc
     9121 actaaagctt atggtatcgc taaacaagca ggagtagttg ctggagttag ttatcttgat
     9181 gtggtattta gtatgatagt tgggataatt ttaggagata atttaccaag tactatggtt
     9241 tttttaggta taataggcat tatttttggt ggattaattt tagttaagaa caaaggaaaa
     9301 aaatgaaaaa aatgatactc attgctggtc cttgcgtgat agaaagcaaa gatttgattt
     9361 ttaaagttgc tgaacagtta aaaaatttta atgaaaatcc aaatatagaa ttttatttca
     9421 aatcaagttt tgataaggcc aatcgcacaa gtattaattc ttttcgaggt cctggtcttg
     9481 aagaaggatt aaaaatttta caaagcgtaa aagatgaatt tggtatgaaa atcttaaccg
     9541 atatacacga aagcaatcaa gcagcagccg taagtgaagt agctgatgtc ttgcaaattc
     9601 ctgctttttt atgtcgtcaa accgatttac ttgtagccgc agcaaaaact aaggcaaaag
     9661 ttaatatcaa aaaagggcaa tttttaaacc caagcgatat caaatacagt gttaaaaaag
     9721 ttctacaaac ccgtggcata gaagatgaag gctatgaagc tgctcaaaaa aatggtgttt
     9781 ttgtagctga aagaggagct agctttggct atggaaatct agtagtagat atgcgttctt
     9841 tagttatcat gcgtgaattt gctccagtta tttttgatgc tacccatagt gtacaaatgc
     9901 caggggctgc aggtggaagt agcgggggga aaagcgaatt tgtagaacct ttagcaagag
     9961 cggcagcagc cgtaggcata gatggctttt tctttgaaac acatattaat ccttgcgagg
    10021 ctttatgcga tggacctaat atgcttaatc ttacacgcct taaaaattgc gttaatacat
    10081 tactagaaat acaaaatatc ataaaggaaa acaaatgaat attattgaag gaaaattaaa
    10141 tttagactca aatacaaaaa ttgctatcat taatgcaaga tttaatcata tcatcacaga
    10201 tcgccttgta gaaggagcaa aagatgcttt tttaagacac ggaggcaaag aggaaaatct
    10261 aagccttata cttgttcctg gtgcttttga gcttccgtat gcattaaaaa aagctataga
    10321 aagcaaaaaa tttgatgcaa tttgttgcgt aggtgcagta attcgtggct caactccgca
    10381 ttttgactat gtttcagcag aaaccaccaa aggcatagcc aatgtgagtt taaatcataa
    10441 tatccctgta agctttggtg ttttaactac agatacaata gaacaagcca tagaaagagc
    10501 tggaagcaag gcaggtaata aaggctttga agctatgaca actgtaatcg agatgttaaa
    10561 tttaagcaag gagctttaat ggcaacgcgt catcaagttc gccaaagcgt catctccttg
    10621 ctttatgctt ttgaattaaa ttctcaaaac aacgtttttg tagatgaaat tttagatgaa
    10681 aaaaaaatac gcaatgaaca aaaaaatttt accttaaatt tatatcatgg aattttagac
    10741 aatttaaaca atattgatga aaccttaaat tcatttctaa atgataatca aattacagct
    10801 ttaggacatg tagaaagagc tatactaaga cttggggctt atgagttact ttttaccgat
    10861 actcctagcg ccattgttat caatgaggct atagaacttg ccaaagaact tgctaatgac
    10921 aattctccaa aatttataaa tggagtttta gatgccttga taaaggctaa aaaatgaagc
    10981 tttgtgtcgc acttgatctt tctacaaaag aagaatgctt gcaacttgct aaagaattaa
    11041 aaaatttaga catatggtta aaagtaggtt taagagcata tttaagagat ggttttaaat
    11101 tcatagaaga acttaaaaaa gttgatgatt ttaaaatatt tcttgatctt aaaattcatg
    11161 atattcccaa cactatggca gatgcttgcg aagaaatatc aaaacttggt gttgatatga
    11221 tcaatatcca cgcaagtgct ggaaaaatag ctatgcaaga agttatgaca cggcttagca
    11281 aattttcaaa aagaccttta gttttagcag tttctgctct tacgagtttt gatgaagaaa
    11341 atttctttag tatttataga caaaaaatcg aagaagctgt aattaatttt tcaaaaatat
    11401 cctatgaaaa tggacttgat ggtatggtat gctctgtttt tgaaagtaaa atcatcaaag
    11461 aacacactca aagaaatttc ctaactctca ctccaggaat tcgtccattt ggagagaaaa
    11521 atgatgatca aaaacgcgtc gctaatttaa caatggctag agaaaattta agcgatttta
    11581 tagtagttgg acgccctatt tataaagata ataaccctag aaaaatttgc gaaaaaattc
    11641 tacaagaaat ttaataatca ttatccttgt tatgttttaa taataaaaat ttttaacaag
    11701 gaaaaattat gattataacc cctgagaatt tatataaaaa aagaagagat tttttaaaac
    11761 ttggagcagg tgctttaata agttcaagcg tgcttgcttc taaattatct gctttaaatt
    11821 tcacaagcga tactaatcca aacaaacttg aaatcagcga tgaagaactt gctacaaatt
    11881 atgtcaattt ttatgaattt tcaacagata aaaaaaaggc tgtatcattg gcacaaaatt
    11941 tcaatactca aaattggaaa atcgatatca gtggagaaat agaaaaacct ttaactttaa
    12001 gcatggaaga tattttaaaa ttctcactag aagaaagaat ttatcgtttt cgctgtgttg
    12061 aaacttggtc tatggtggta ccttgggtag gctttgaatt gcgtcgtttg attgaaatgg
    12121 caaaacctac aagcgaggca aaatttgtta aattcaccac tcttttagat aagagccaat
    12181 ttcccgatca agacgcttta tttccaacta tagactatcc ttatgtagaa ggacttcgca
    12241 tggatgaagc tatgcatcct cttaccttgc ttgcagtagg aatgtataaa aaagccttaa
    12301 agcctcaaaa tggtgctcca atacgccttg ttgttccttg gaaatatggc tttaaaagta
    12361 ttaaatccat agttaaaata gaatttacca aagaacagcc taaatccact tgggaaagtt
    12421 acgctccaag tgaatatggt ttttatgcta atgtcaatcc taatgtttct catcctagat
    12481 ggtctcaagc taacgagagg gctttaggag acttctttac caaacctact ttaatgttta
    12541 atggctatga aaaagaagtg gcaagtttat ataaaaacat ggacttgaaa gtgaattttt
    12601 aatgcggaca aaatacttta aatttcttgc ttattttagc tttatcataa gtttaatata
    12661 tggcttttat catatcataa aagcctttga ttttgtaaaa gaagcctata tttacaccgg
    12721 aatatttgct ttaatctttt taaatttaag tcttttattt tctttactta aatttaaaaa
    12781 aacaaaaaat tatcctaaaa ttttaggtat ttttgcagct ttttgggcga ttttacactt
    12841 tttaaattat tttatttttg atagaaatgc tcaaatttca aggcttttcg atgatatttc
    12901 acatcgttta ttagaagcaa gtggatttat cgcattttta atcatatttt taatgctttt
    12961 aagttctttt gaaatcttta aaaaacttag taaaatcaga aaactaggat atttatgctt
    13021 agttttggca agttatcatt attttttaac cccaaaagtt cctatgtttt gggaatggag
    13081 tgctttaatt gtagctttgt tttattttat agttcgctat acaaaaacat taaaaaagtt
    13141 aaaatccaac aatcttactt ttatcaaaac ttgaatttaa ttctttttgt atgctttcta
    13201 taaaatcttg cattttaaaa accccatctt gtgatacagc tactttcaaa gctgtattct
    13261 ttactaccat taaaatttgt gctccactta attcataatt tgataaaata tttatatcaa
    13321 aatctttttc aaataatgct tttttaggta gaaatttttc ccaaatttta agcctatctt
    13381 taaaatcagg ttttttaaat tctatcttat aatcaaatct tcttgaaaat gcactatcta
    13441 agctttctaa aaaatttgtc gtagcgataa tcacaccact aaaacgctca atttgctcta
    13501 agaatatatt ttgcatttga ttatgcattt tatcactacc actacttcca tctacacgcg
    13561 tacttaaaaa ctgatcagct tcattgagaa gtaaaatagg actttgttta caagtttgca
    13621 cgatattttt ataagtatca aaaatttttc ttacattttg ctcactctct ccaacccatt
    13681 tgctcaaaat tttagaacag tcaaaactaa gaacagattt tttcattgat ttagccatag
    13741 ctaaagctga catagttttt ccagtaccag caggaccata aaaaataatt ttagcttcta
    13801 tatttttatt actctttata ccccaagaat gaagtctttc taggactttt ttatcttgtt
    13861 gttttaaaat attttctaaa agctcttttg tattttcagg cataataata tcattgatgt
    13921 cagtgcttgg ttctataagc tcgaaaatat cttgatcttt taaaacactt tcaattttga
    13981 tttttttact ttgttttggt tcaaaattta taattctttg taaaatttca tcgataataa
    14041 aaaaactttt agaaatatct ccaaaagcat ttaaatattc atcatactcg attaagttta
    14101 aaagaggagc attttcttgt aatagttttt tatttttatg cctttctaaa tcattttcac
    14161 tgattaaaga aagtaaagaa ttcatttctc tagaaatcga actttcatta cttaaggcgt
    14221 attcttcttt taaaagtgct agaaaaataa tttgttctt
//
LOCUS       DAEBKH010000026        14178 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.026, whole genome shotgun sequence.
ACCESSION   DAEBKH010000026 DAEBKH010000000
VERSION     DAEBKH010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14178)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14178)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14178
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.026"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..671
                     /locus_tag="KIL20_000561"
     CDS             <1..671
                     /locus_tag="KIL20_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HBD2720614.1"
                     /translation="VSEAFYQAIVQIRKLNQSRQFFLRNIMHELKTPITKGLLTLEMI
                     EDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRKKYNILDVLDEAKEIAMRDD
                     SNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGFVQIDIIDDYICFKNRGPEL
                     NNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKLDYLYEDGVNLFYFRNLKSV
                     IVKE"
     gene            764..838
                     /locus_tag="KIL20_000562"
     tRNA            764..838
                     /locus_tag="KIL20_000562"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:796..798,aa:Asn,seq:gtt)
     gene            complement(928..1176)
                     /locus_tag="KIL20_000563"
     CDS             complement(928..1176)
                     /locus_tag="KIL20_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HBD2720615.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSAIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(1187..1786)
                     /locus_tag="KIL20_000564"
     CDS             complement(1187..1786)
                     /locus_tag="KIL20_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HBD2720616.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFELAAKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEHPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKHS"
     gene            1934..2599
                     /gene="dccR"
                     /locus_tag="KIL20_000565"
     CDS             1934..2599
                     /gene="dccR"
                     /locus_tag="KIL20_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HBD2720617.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            2592..3782
                     /gene="dccS"
                     /locus_tag="KIL20_000566"
     CDS             2592..3782
                     /gene="dccS"
                     /locus_tag="KIL20_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HBD2720618.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGATL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDAKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVSKDLFWIRTKVF
                     GFAIMAFCILGLISYILVKIALKPLEDKISTLNRFIKDSTHELNTPLSVILMSIEQLE
                     HQNLGDNAKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(3825..5462)
                     /gene="groL"
                     /locus_tag="KIL20_000567"
     CDS             complement(3825..5462)
                     /gene="groL"
                     /locus_tag="KIL20_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HBD2720619.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKIANLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPAMPDMSGMGGMGGMGGMM"
     gene            complement(5483..5743)
                     /gene="groES"
                     /locus_tag="KIL20_000568"
     CDS             complement(5483..5743)
                     /gene="groES"
                     /locus_tag="KIL20_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HBD2720620.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
     gene            5905..8445
                     /locus_tag="KIL20_000569"
     CDS             5905..8445
                     /locus_tag="KIL20_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720621.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSSLELQANIANMADFNLKGALSPFKLGFDLDYLISLNQNYAKNLG
                     LNLNQNLSFVGKIQGKASDFTLDGKGYLLGSNVLLNARMYNYSPIALNLDAQNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTNYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDISKNALSTDFNLSIPSLVKLET
                     LTKTRLNGNLGVIGQTSVVNNALSSLNAQVIGLGGEVKASLKNNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKLNTNELKKIAKIELPNTIFS
                     FDAKANAKNSNIAYNALLASNLLNIKKLQGSYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLAAKAHIIGTQIQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     AGMPNYASGIVNAKINLDNIDFNNLNGKANLEAKGILNATTLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGSFDISKMLLNSDFNLKINDFSKLGFLLDR
                     KLKGKAEFNGKVGFDKSLNFVVNSPNLFEGRLQSTLKDNLLLADLNGVDLSSLAQGLD
                     FMDVYQGKADVKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITNDVYRTA
                     NAKALIKKENIKLDLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGT
                     TENPKVNLNAGSVLNSIKNVVGGGVSDGAKSTGDKVDKAVNKLLNKIF"
     gene            8454..9065
                     /locus_tag="KIL20_000570"
     CDS             8454..9065
                     /locus_tag="KIL20_000570"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HBD2720622.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLKAKYRPNLGDSIAVNGACLSVT
                     KLYEGGFEVELSRESRTHIAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGTLEKI
                     QKDENGVDFYISLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            9029..9709
                     /locus_tag="KIL20_000571"
     CDS             9029..9709
                     /locus_tag="KIL20_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="laccase domain-containing protein"
                     /protein_id="HBD2720623.1"
                     /translation="MGRSRKNFLSLLENDKVVIFCAFDKDYNVFRAKVYSENLFYHLG
                     FKDIKKCVFMDQIHSHKVIIYEKNLKNLSCDGLISKEKNIALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDDKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTPKRF
                     VSVVYLKD"
     gene            9711..9914
                     /locus_tag="KIL20_000572"
     CDS             9711..9914
                     /locus_tag="KIL20_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720624.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEINEK
                     EKEELATLLNSLINAKDKALLSN"
     gene            complement(9911..11071)
                     /locus_tag="KIL20_000573"
     CDS             complement(9911..11071)
                     /locus_tag="KIL20_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HBD2720625.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            11193..11918
                     /locus_tag="KIL20_000574"
     CDS             11193..11918
                     /locus_tag="KIL20_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HBD2720626.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSVFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDFR
                     QFCDDNAVGILVVALENQAEVVDCQDFNKLYEVPISKPTSVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            11921..13303
                     /locus_tag="KIL20_000575"
     CDS             11921..13303
                     /locus_tag="KIL20_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HBD2720627.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLSSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVNPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVREAIDEDLRNLEHYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPALLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            13307..14113
                     /locus_tag="KIL20_000576"
     CDS             13307..14113
                     /locus_tag="KIL20_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HBD2720628.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGAIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNYNHNEGNKIRKNTKKS"
BASE COUNT         4810 a         1893 c         2329 g         5146 t
ORIGIN      
        1 aagtaagtga agctttttat caagccattg ttcaaattcg aaagctaaac caatctcgtc
       61 agtttttttt aagaaatatt atgcatgaac tcaaaactcc tattactaag gggcttttaa
      121 ctttagaaat gatagaagat aataaatata aagagcgctt aaatggggtt tttactagac
      181 ttgaaatttt aattaatgaa tttgctgcta ttgagcaaat tacttcaggg gctgctttta
      241 taaatagaaa aaaatacaat attttagatg ttttagatga agccaaagaa attgcaatgc
      301 gagatgatag caatatacgt atttttatgg aagaaagttt ttttgtaaat gtggatttta
      361 aactttttac tacggcgatt aaaaatatga tagataatgg tattaaacat tctgaagatg
      421 ggtttgtgca aattgatatt atagatgatt atatttgttt taaaaatcgt ggtcctgagc
      481 ttaacaatac tttagaatac tatactcaag cttttactca aggatcaaaa caaaaatcaa
      541 gttttggatt agggctttat attgtaaata ctattttaga aacacatgga atgaagcttg
      601 attatttata tgaagatggg gtaaatttgt tttattttag aaatttaaaa agtgttattg
      661 ttaaggagta aattaatttt tttacataaa aaatgtattt ttgtgtaaaa acccttgaca
      721 aagtttttta atttcactat aatcacattt tacttttaaa tattccggat tagctcagcg
      781 gtagagtagt cggctgttaa ccgattggtc gtaggttcga atcctacatc cggagccact
      841 tttttaactc catttttaat attcataaat gtattttaat ataaaaaatt aataagtctt
      901 tatcacaaaa aattgtgata aagtttttta ttttgtttgt ttaagatttt tgacaatttt
      961 atctattttt ttacttgcct tttgataatc cccatcttta agttcttcta gggcattaac
     1021 agcaaaagaa aaatcttcaa cttcattaag ataagcctct atggcttctt ttactatggc
     1081 tgattttggt ttagaaagat ttttacttaa attatccaaa cgctccttaa gctctaaagg
     1141 cattctaaaa gaataagttt ttacattgcg tttcatttta tcctccttaa gaatgttttt
     1201 tgtaaaattt tatagcttgt ttacaagttt tacaagtaaa tttatgacct tgtaattcta
     1261 ttttttgatg aatgctataa ggaacatcgt gaattttacc aggacaatta caggtataaa
     1321 gataaaattg tggatgctca ttatcttcat cttctgctgc ttcaaagcta acatcaccac
     1381 catcatctgt agacaaagaa gaacttctcc atttttcaac tttcatgtct tcatatagta
     1441 tatgttctaa aagccacttt ttagccacta tataaagttt ttctttaaga tcattggttg
     1501 atttgatatc tttgatcaag ttgatcatgg tttggatgat ttctttatgt atttttcgat
     1561 gttcttctaa atttggatag cctattagct gcatgtattt ttcttcatca ttaaagtgat
     1621 ctttcatata attaaaaaat tcagccaaaa gttctttgac ttcattttta cttacagatc
     1681 tatctgatac aacttcaact tttgcagcaa gttcaaaaag ctttttatgt tgctcatcaa
     1741 ttttagcatt gtgcacacta tagctgttat cccattttgg aagcatttta actccttaag
     1801 gaaaaattta tttgtataaa aggattatag ataaaaataa attaaataaa aatgaaattt
     1861 tattaaataa ttgataagaa ttttgataca atgatatata tttaagagat ttgaagttag
     1921 aaagatttaa attatggctg ctaaaatttt acttttagaa gatgatttga gcttgagtga
     1981 gatcattgaa gagtttttaa acgatgaagg atatgaagta tttttatgcg ataatgcaca
     2041 agaagcttta gatatggctt atgaaagata ttttgatctt tggattttag atgtaaaagt
     2101 tcctttagga gatggatttt cattacttaa agaattaaga aaaagcggaa agcaaactcc
     2161 agcaattttc atgacttctt taaacacaac aaacgattta aaacaaggct ttgacgcagg
     2221 ttgtgatgat tatataaaaa aaccttttga acttgccgag ttatctatca gggttaaagc
     2281 tttgcttaaa agagcttttt cacataaaaa tgaagatttt gaagatttag gagatggatt
     2341 tagatttgaa tttactacac aaattcttta ccataataat aaagccttga ctttaccgag
     2401 taaagaaatt aagcttttgt ctttattact taaaaataaa aacaactttt taagcacaga
     2461 gagaattttt gaagaactct gggattatga tgaggagcct agtgagctaa gtttaagagc
     2521 ttatgtaaaa aatttacgta aaattttagg aaaagaaaaa attataaatc aaagaggcag
     2581 gggatattgc tatggctaaa aaagtcatta ggcaaatttt attaatctac ttaacaacta
     2641 caggtatttt tttaactatt ttttttgcat tatggtatca aaaattatat gaagaattag
     2701 ttgttttaaa gggtgccact ttgagagaaa atcatagaaa tattgttata agcatcttaa
     2761 attctcgttt tacccctata gatataagtg caaaaaatat tgctcaaagc acagcgctaa
     2821 aatttgctat atttgatgct aaaaagattg tttttagtaa tatagatttt gatttaagaa
     2881 aagcaaagat agagcttaaa ggtagaggta tttgtgataa taaggttttt ttccttgctc
     2941 ctatgagtgc agatcattat tttttaagac atgctagcaa tgaagaagta aatactaacg
     3001 atggtttgca aattttaata cagggtgaag atgttagcaa agatcttttt tggattagaa
     3061 cgaaagtttt tggttttgct attatggctt tttgcatatt gggtttaata tcttatattt
     3121 tagtaaaaat tgctctaaag cctttggagg ataaaatcag cacactaaat cgttttatta
     3181 aagattcaac tcatgaactc aataccccat taagtgttat tttgatgagt atagaacaac
     3241 ttgagcatca aaatttagga gataatgcta aatttacaag gattaagctt gctgcaaaaa
     3301 gtttgtctca agtgtattct gatcttgttt tttataattt ccctaatact ttagaaacag
     3361 aaaaacaaaa atttgattta agaatactac ttgaagaaag attggaatat tttaaagtat
     3421 tttttgagca aaaaaaaatt acactaaagc ttgatttaaa tcaagcaaat atttttgctc
     3481 ctaaaagtca aatttctaaa ttgattgata atcttataag caatgctatt aaatacaata
     3541 aaaaaggtgg agtaatttct ataattttaa aagccaattt tttaagtatt gcggatacag
     3601 gttgtggaat ttcaaagtca aatttaaatc atatttttga taggtataca agatttaata
     3661 ctgatcaagg aggatttggt atagggcttt ctttggtaaa aaaagtttgt gatgataatg
     3721 atattaagat tatttgcgaa tctgtagaaa atcaagggag tgtttttaaa ttaaattggt
     3781 aatcagcaag gaaaatcctt gctgataaga ggttggagca gatattacat cattccgccc
     3841 atgccaccca ttcctcccat accgctcata tctggcatag caggtttatc ttctttaatt
     3901 tcactaattg ttgcttctgt ggttaaaagc atactagcta cagaaactgc attgagtaaa
     3961 gctactcttt ctactttaac aggatcgata attccacttt caagcatatt aacatattca
     4021 ccttttgcag catcaaagcc tgtattttca tctttagcat tttctacgct atttacaacc
     4081 acacctgcat caaagcctgc attttcagca atttgtctta aaggtgctct taaagctctt
     4141 tcaacgatag ctgcaccgat tgcttcatcg ccttgtagat caagtttgat tttagctttt
     4201 gctttgataa gcgctgcacc accaccaatt actatacctt cttcaactgc tgctttagta
     4261 gcacttaaag catcatcaac gcgatctttt ttctctttca tttcagtttc agttgctgca
     4321 cctactttaa taactgcaac accgccactt aattttgcaa gtctttcttg taatttttct
     4381 ctatcataat ctgaagttgt ttcagcaatt tgtgctttga tttggtttac tcttgcatcg
     4441 atatttgctt tttcacctgc gccatttact atggttgtat tgtctttatc gatgattacg
     4501 ctagaagctt gtccaagatc ttgtatggtc gcactttcaa gagttcttcc aagttcttca
     4561 gaaatcactt ctccgcctgt taaaatcgct atatcttcaa gcatagcttt tcttctatcg
     4621 ccaaaacctg gagcttttac tgctgaaata ttaagaacac cgcgaagttt atttacaacc
     4681 aaagttgcaa gtgcttcacc ttcaatatct tcagcgataa ttaaaagtgg tttgcctgtt
     4741 ttttgaattt gttctaaaac cggtaataaa tcttttaaat ttgcaatttt tttatcaaaa
     4801 agcaagatat aagggcttga aagctctact gtcatttttt ctgcattagt gataaaataa
     4861 gggcttaaat aacctctatc aaattgcata ccttcaacta catttaattc atcattgatt
     4921 gattttgcct cttcaacagt gataacacca tctttgccca ctttttccat agcatcagcg
     4981 attaaatttc cgattttttc atcagaattg gctgagattg tagcaacttg tgcaatttct
     5041 tttttatctt ttacttcgcg agaaagtttt ttaagttctg ctactatagc ttcgcaagct
     5101 ttatccatac cgcgttttac ttcaatagga tttgcacctg ctgtgatatt tcttaaacct
     5161 tctttgaaaa ttgcatgagc taaaaccgtt gcagtagttg ttccatcgcc tgcttgatca
     5221 gctgttttac tcgctacttc tcttacaagt gaagcgccca tattttcaag actatcttta
     5281 agctctactt ctttagcaac acttacgcca tctttagtaa tgcttggagc accaaagctt
     5341 ttttggatta aaacattgcg tcctcttggc cccatagtta cttttaccgc gtcattaagt
     5401 tttttaacgc cctcataaag tttatttctt gcttcatctg aaaaaataat ttcttttgcc
     5461 attttttatc cttttttata aattatttta aaattcctaa gatatcatct aaatttaaaa
     5521 ctaaatattc attattatca agtttaattt ctgttccacc gtatttagca aacacgattt
     5581 tatcaccatt tgcaatatca gtgatttctt tacttactgc tactacttca cccattaaag
     5641 gcttttcttt agcattatct ggtataatta tgcctgaggc tgttgtttta gtttcttcta
     5701 cgcgtttaac tagaacacgc tttcctaaag gttgaaaatt catttttgtc catccttaaa
     5761 aatattgatt ttagcactct tttatttaga gtgataatat catactataa aaaatgaatt
     5821 ttgtcaatac tttaaattaa aatatttata aaagtttagt tttatagact aaagttattt
     5881 tataaaataa actaaaggat aaaaatgaaa aagatttttt atggagttat agcttttgtt
     5941 gttgtgcttt taattgctat ttataccata cttttcacaa gttttggtaa taatatagtg
     6001 gcaaatatag cgcaaaaaaa gatcaaagaa agtgcgggat tagatgtaaa tatcacgcat
     6061 tttaatttac gtttttcaag tcttgaattg caagcaaata tcgcaaatat ggcagatttt
     6121 aatcttaagg gagctttgag tccttttaag cttggatttg atcttgacta tcttatttct
     6181 ttaaatcaaa attatgctaa aaatttaggt ttaaatttaa atcaaaacct ttcttttgtc
     6241 ggtaagattc aaggtaaagc aagtgatttt actttagatg gaaagggtta tttgttaggt
     6301 tcaaatgtac ttttaaatgc aagaatgtat aattatagcc ctattgcttt aaatttagat
     6361 gcgcaaaatc ttaagataga agaaatactt catcttttat cttaccctag ttacgctaaa
     6421 ggttttttaa atgctcaagc aaaaatttca gcacagaatt taaaacctga tgggaatatc
     6481 atcataaaac ttgatacaaa ttatataaac tatgaggcga taaaaaaaga tttttcttta
     6541 gacttgcctt taaattctaa tcctaaagca gaaattttgg ccaatgttaa agaagataag
     6601 atttatgctg taagtaaaat ttacaatgat tatcttaact tacaaaccca aaaaactctt
     6661 tatgatatta gcaagaatgc tttaagtact gattttaatt taagtattcc ttctcttgta
     6721 aagcttgaaa cacttacaaa aactagacta aatggtaatt tgggtgtgat aggtcaaaca
     6781 agtgttgtaa ataatgcctt atcaagttta aatgctcaag ttatcggact tggtggagag
     6841 gtaaaggcaa gtttgaaaaa taataaaatt tttgcagata ttaatgaagc aagtttggaa
     6901 aaattattag ctcttgcagg atatggagct ttggtttctg gaaatttaaa tgctaaactt
     6961 ctaaatgcag atttggattt ttctaatttt gatcttgaag caaaaataaa caatgcaaaa
     7021 cttaacacca atgagcttaa aaaaatagct aaaatagagc ttccaaatac aatttttagt
     7081 tttgacgcta aagcaaatgc aaaaaatagc aatattgctt acaatgcttt gcttgcttca
     7141 aatttgctta atatcaaaaa acttcaagga agttataatt taaaaaatag tgagttaaat
     7201 acagatttaa atgcttttat cgatgattta tctcagttta gtgctatagc aggacaaaaa
     7261 ttacaaggca aggcagatct tgctgcaaaa gctcatatta taggcactca aatacaaaat
     7321 ttaaatgcaa atgcaaattt ggcagatggt gtaatcaagg ctgattcaaa tggtaaaaaa
     7381 cttgatttaa acattgataa acttgattta tctaaacttt ttgttatagc aggtatgcca
     7441 aattatgcca gtgggattgt taatgcaaaa attaatttag ataatatcga ttttaacaac
     7501 cttaatggta aagcaaattt agaagctaaa ggtattttaa atgctacaac tttaagtaaa
     7561 attttaaata aaaattttcc aaacaataca agttatgatt taaataccaa aattaatttt
     7621 aaaaacaata tcgctcaatt tgattctgtt ttaaattcat ctttagctga tcttacaaag
     7681 ctacaaggaa gttttgacat aagcaaaatg cttttaaatt cggattttaa tctaaagata
     7741 aatgattttt caaaactagg ctttttgttg gatagaaaac ttaaaggtaa ggcagaattt
     7801 aatggaaagg taggttttga taagagttta aattttgttg taaatagtcc aaatttattt
     7861 gaagggaggc ttcaaagcac acttaaagat aaccttttgc ttgctgattt aaatggagtg
     7921 gatttaagta gtctagctca aggtttagat tttatggatg tttatcaagg taaggcagat
     7981 gtgaaggcaa attacaatct tttaagtgaa gaaggagagg ttaatttgga tatgaaagag
     8041 ggtaaattaa aaccaaatct tattaccaat gctttaaaaa ttttaacact aaaagatatt
     8101 accaatgatg tttatcgcac tgctaatgct aaagctttga ttaaaaaaga aaatatcaaa
     8161 cttgatctta atatgcaagc agatcgttct tatattttag tacaatcagg agctttaaat
     8221 tctaaaagcg gagctttaaa tttgcctttt gatattaaac tcgatagagc caattttaaa
     8281 ggaagtatta caggaactac ggaaaatcct aaagtgaatt taaatgcagg aagtgtgtta
     8341 aattctatta aaaatgtagt aggtggcggt gtgagtgatg gtgctaaaag tacgggcgat
     8401 aaagttgata aagcggtgaa taaattatta aataagattt tttaaggtaa aaaatgttta
     8461 atggactcat aagagaaatt gctaaagttc aatcttatca aaacaatact ttaagcttaa
     8521 aagcaaaata tcgcccaaat cttggcgata gcatagccgt aaatggagct tgtttaagtg
     8581 taacaaaact ttatgaaggg ggttttgaag tggagctttc tcgtgaaagt cgcactcata
     8641 tagctataga gaatttaaaa gataaagttc atatagaacc tgctttaaga tatggcgata
     8701 gaattgatgg gcatcttatg caaggacata ttgattttat cggcacactt gaaaagattc
     8761 aaaaagatga aaatggagtg gatttttata tatctttacc taaagaagct atgaaattta
     8821 tggcagaaaa aggaagtata gctgttgatg gagtaagtct tactatcaat gaaattttaa
     8881 aaaatggtat taggcttact attattccta ttacttttaa agaaacgctt tttaaagact
     8941 atcaagtagg tagaaaaata aatatagaaa gtgatttact tgctcgttat atttatgcac
     9001 aattgcaagg taaaaacaaa ggattatcat gggaagaagt cgaaagaatt tcttatcttt
     9061 attagaaaat gataaagtcg ttattttttg tgcttttgat aaggattata atgtttttag
     9121 agctaaggtt tatagtgaga atttatttta tcatttaggt tttaaagata ttaaaaaatg
     9181 tgtttttatg gatcaaattc actctcataa agttatcatt tatgaaaaaa atttaaaaaa
     9241 tcttagctgt gatgggctta taagtaaaga aaaaaatatc gctctttgtg ttttaagtgc
     9301 ggattgtctg cctttgatct tatatcatga aagcggcatt atagcagctt tgcattcagg
     9361 tagaaaagga agctttgaaa atatcctaaa agaatgcgtt gatcaaatta ctatgcaaaa
     9421 ttcacattta gataagaata aatttcatct ttttatcctg cctggaattt gtgctaaaaa
     9481 ttatgaaata gatggagaaa ttttagaatt tgctaaaaaa gaatttaaag aatttgttca
     9541 agatgataaa cttgatttaa aagctttagt aaaatttcaa gctcaaaatt taggcattga
     9601 aaatattaaa gattgtggaa tttgtagttt tgatgatgag agtttttttt cttatcgtcg
     9661 tgataaaacg cctaagcgtt ttgtgagtgt ggtttattta aaggattaaa atgtatgaaa
     9721 gaaaagattt aagagtgtta aaaatcattc aaaaagctag agaatttggc gatggagatt
     9781 tgttaaatga agctttggta aaacaattga ttgatgcaga tttttgtgaa attaatgaaa
     9841 aagaaaaaga agagcttgca actcttctaa attctttaat caatgcaaaa gataaagcgt
     9901 tgttgagtaa ttaaaattct atatagtttt caaaatcttc ttcttttgga ggattaggtt
     9961 gattcgaggc tagggcttct ttaacaacct gctcgtatcc agctatgata tgtttaaaat
    10021 tctcttttgc ttttccacta agttctgatt tggcgatttt tacaacagat gcaggattta
    10081 tagctttatt atttaaatat actccaaaat gcaaatgagg acctgtgctc atacctgttg
    10141 aaccaacata tgcaattact tgtccttgat ttaccttttg tccgttttta atttttgcaa
    10201 aacgactaag atgagcatat aaagtcatat aacctgagtc atgcttgatt tgaattacat
    10261 ttccataacc accttttgtg cctataaagg ttactactcc tttgccagca ctttttacag
    10321 gagttccagt aggtgcagca tagtctatac caagatgggc gcgatagcgt tttaatatag
    10381 gatgatatct tgctgttgta aaaggagagg aaattctagt gtagttcaca ggttttgtaa
    10441 gtaaaaaaga ttctaattct ttgccatcgc gatcatagaa tatatcatta taagaaaaga
    10501 cttctctagc gcttttatta atttctacca ttgccatttt tatatttata tcgccccaaa
    10561 gtttacccat gcgtcttttt tgttcataat atagggttac ttcatcacct ttttggatat
    10621 tgcgaaaatt tatacttcct cgaaaagcac gaaccatagc acgagctaaa gtactgctac
    10681 cactttcttc atagacatct tgataagcag agcttttaat ggttaaatgt aaaattctat
    10741 cttctttttg ataagataca ggagtaaaag caagagtgta ttgtccatct ttatctttat
    10801 agatatgaat ttgtaaatca tcactaattg gaattaaaac ttgttctatg ttgttgtttt
    10861 catcttttaa aacttgatat tttattttat aggctatatc agaagcaagt tcttgatctt
    10921 ctctatcaag tccataataa agcgacatag gtatggaatt tctttgtaag aatttaagca
    10981 aggtatctcc attatcccaa gttagctctt caacacttaa agctgcaaaa ctttgaacaa
    11041 caaaaataaa taaaagcaat aattttttca tgagataacc ttaattttta aaagaatttt
    11101 gaaatttgaa agctatattt tactttattt ttcttacaat tgcttaacaa aaaaggatta
    11161 taattctata aatttttatt taaggagcaa atttgtttaa aactatagtg tgttttttag
    11221 ctttaaacct tagcctcttt gcggttggat ttgatttaaa acctataaaa agtgaacttg
    11281 taaaagttga tgatatttat ggttatatta aagatagtga tgatataaaa ctttattcaa
    11341 gtggcgtagt agtgcaacat tttagcaatt cgcaaagtat catcgctaga gcaagtgtta
    11401 tagataaaaa aaatggtttg gcaaaattag aatttagtgt tttttcagct cttaagcaag
    11461 atgctttgcc tttaccaaat gttttaccta aagtaggtga tgaggttgtt ttaaattttc
    11521 tttatgatag aggattggta attgctcctg atgaacaaac ttataatgaa cttgttagag
    11581 aatttccgca gatatatttt acccatattg acatttttgg agcacaatta attagaacgg
    11641 ccactctttc tcctaagcgt tcagatttta ggcaattttg tgatgataat gcggttggca
    11701 ttttggttgt ggctttggaa aatcaggcag aagttgtgga ttgtcaagat tttaataagc
    11761 tttatgaagt gcctataagc aagccaacta gcgttcaggt tcctttttat tctcgtatag
    11821 gtggatataa aagtaatttt tttgatttta actctcaaga aatagggaat tattatagat
    11881 attatgatgc tttgattaat cttcctaagg tgcaataaac atgaaaaaag aatttgaaca
    11941 atattttaaa cgatttttag gagaagaaaa cgcttatttt gatgaaattc acaaaagagc
    12001 ttatagctat gatgcgacaa aaaaacatta tttacccgat ggggttcttt ttccaagaaa
    12061 tgaagaagat attgctcaaa ttttaaaatt ttgcaatgaa aataatatca tagtcatacc
    12121 acgaggctca ggatctggtt ttacaggagg agctttagct gttaatggcg gtgtggtgct
    12181 tgcttttgaa aagcatatga ataaaatttt ggaaattgat cttgaaaatt tagtggctgt
    12241 tgtgcaacct ggggttatta atatacattt acaaaaagaa gtggctaaat acggactttt
    12301 ttatccgcct gaccctgcta gcatggagta ttctagctta gggggtaatg taagcgaaaa
    12361 tgctggggga atgagagctg caaaatatgg cattacaaaa gattatgtga tggctttaag
    12421 ggctgttttg tctagcggag aaatcattcg tgcaggaaaa cgcactatta aagatgtagc
    12481 aggttataat ttggcaggaa ttttaatcgc tagtgaaggt tctttggcag ttttaagtga
    12541 gcttacttta aaattaatac ctttacctaa attcaaaaaa actgcttttg ctatttttcc
    12601 aagtgtaaaa agtgctatga atgcggttta taaaagtctt gctagtggcg taaatcctgt
    12661 gtctatggaa tttttagata atcttagcat tagagcggtt gagagtaaat ttaacaaagg
    12721 tttgcctata gaagctggag ctattttgat tgctgatgtg gatggtaatg ttagagaggc
    12781 tattgatgag gatttaagaa atttagaaca ttatttttta gaagctggag ctagtgaatt
    12841 taaaatagca aaagatgaac aagaaaccgc agatatttgg tttgctagaa gaaattgttc
    12901 tcaaagcatt gccatgtatg gaactttaaa acttaatgaa gatattacag ttccgcgttc
    12961 taaactacct gctttgcttg aaggtataga tgagatttct aaaaaatatg gttttaaaat
    13021 tccttgtttt ggacatacag gggatggaaa tgtgcatact aatgttatgg ttcctgataa
    13081 aaatgataaa gagcaggtga aaaaaggcta tgaagctgtg gaagaaattt ttaaattaac
    13141 agtgaaactt ggaggaactt taagcggaga gcatggtatc ggactctcta aagcaccttt
    13201 tatgaattta gctttttctg aagccgaaat gaatttaatg agaaatatta aaaaagcttt
    13261 tgatccaaat aatatactaa atccttttaa aatgggactt tagaaggtga aaaatttttt
    13321 tactattttg ctaaatttgc gtgataagga aattttaaat tatgcagcag cgcttagttt
    13381 ttatactgta ttatctttaa tacctatttt atttgtatgt ttttctgttt ttacgcaaat
    13441 ttctagtttt aaagcttatt atgaaaaagc aaagcaagta atttttgctt ttttaatacc
    13501 aacgcaacaa gatgttgttg ctacctacat cgatactttt ttaaaaaata gtgtaaattt
    13561 gggtattgta ggtcttattg ctatggcatt tacttcttta gctttttttt caggctatga
    13621 ttttgtaatc aatcgtatta ctaaaaatga acctaaagga ctttggcaaa gcattagttc
    13681 ttattggact cttttaactc ttgttccttt ggggcttggg cttagttttt atatttcagg
    13741 ttttatccaa caaactttag atgattataa aatagggttt aatttttttg aaattttacc
    13801 ctttgtaatt atttggggtt tattttttat atcttattca agttctgttc ataagggaac
    13861 tcttaaaagt ttagctttag tatcttttgg agcgggtgct atttggtata taggaaaaaa
    13921 tttatttgta tattatgtgg tatataataa aacatacgct agtgtttatg gatctttttc
    13981 tactatttta ttctttttta tttggattta tatttcttgg attatttatc tttttgggct
    14041 taaactctat tattttctaa attacaatca taatgaaggg aataaaattc gcaaaaatac
    14101 aaagaaaagc tagatattta aatcgtacag agattaaaga agcaataaga taacttataa
    14161 aaatccaaaa tgggatat
//
LOCUS       DAEBKH010000027        13947 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.027, whole genome shotgun sequence.
ACCESSION   DAEBKH010000027 DAEBKH010000000
VERSION     DAEBKH010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13947
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.027"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            154..753
                     /locus_tag="KIL20_000577"
     CDS             154..753
                     /locus_tag="KIL20_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide A protein"
                     /protein_id="HBD2720629.1"
                     /translation="MNNILLKLDKNRHFCFLKDNINYENKKDIAIFRGAVYQKYRKEF
                     FDSYFGRTFCDIGDTSKQPSQWKKNFLNKKEQMKYKFIISLEGNDVASNLKWAMNSNS
                     LVLAPKITCETWFMEGTLKPNYHFALIDNENLSAVIEYFKSRPKDALEIINNAHQYIK
                     KFLDKKKEFHIGILVLTKYFYYSRQLELNKKRDILELIK"
     gene            893..968
                     /locus_tag="KIL20_000578"
     tRNA            893..968
                     /locus_tag="KIL20_000578"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:926..928,aa:Ala,seq:ggc)
     gene            972..1047
                     /locus_tag="KIL20_000579"
     tRNA            972..1047
                     /locus_tag="KIL20_000579"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1005..1007,aa:Val,seq:gac)
     gene            1075..1605
                     /locus_tag="KIL20_000580"
     CDS             1075..1605
                     /locus_tag="KIL20_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HBD2720630.1"
                     /translation="MQNTIIQKAVHKDLNSILEITKDALNAMKAMNFHQWDENYPNEI
                     VFKEDIQAQELYVFKENDEILGFICINEKFEPEFYKQVIFNKNYDEKAFYLHRLAVKQ
                     NAKGKGVAQKLLNFCENFALENHKASLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(1585..2187)
                     /gene="leuD"
                     /locus_tag="KIL20_000581"
     CDS             complement(1585..2187)
                     /gene="leuD"
                     /locus_tag="KIL20_000581"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HBD2720631.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(2189..3601)
                     /gene="leuC"
                     /locus_tag="KIL20_000582"
     CDS             complement(2189..3601)
                     /gene="leuC"
                     /locus_tag="KIL20_000582"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HBD2720632.1"
                     /translation="MTMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSIDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIRKLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ESITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALSYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGHKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(3588..4664)
                     /gene="leuB"
                     /locus_tag="KIL20_000583"
     CDS             complement(3588..4664)
                     /gene="leuB"
                     /locus_tag="KIL20_000583"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HBD2720633.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFEFNEAKI
                     GGASIDAHGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHTSPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERIAHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENDNG"
     gene            complement(4661..6196)
                     /gene="leuA"
                     /locus_tag="KIL20_000584"
     CDS             complement(4661..6196)
                     /gene="leuA"
                     /locus_tag="KIL20_000584"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HBD2720634.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRVLDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGMATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSAIGIHENRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENK
                     FILEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPALKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGISTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMA"
     gene            6516..7145
                     /locus_tag="KIL20_000585"
     CDS             6516..7145
                     /locus_tag="KIL20_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720635.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(7181..7825)
                     /locus_tag="KIL20_000586"
     CDS             complement(7181..7825)
                     /locus_tag="KIL20_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HBD2720636.1"
                     /translation="MNKKLLSIIASATLFSNLALADENSGFFIGADAAWMHAQVKSEL
                     KHKNTKQNFNGDISGNIPSFGLKLGYRLNENHRIYAGYNYSDEFSDFIKTPKIQIEGD
                     FTTHKFLTGYDFTPKLFEKTRAVLGVYGGYARTDLTLKTSFLSLSQNFDGYFYGAKIG
                     ALYDLTPHNEIELGFKAEQIHYNSRNFYQNKVGSNFYDPKQTNYGVYLGYNYKF"
     gene            complement(7963..8346)
                     /gene="queF"
                     /locus_tag="KIL20_000587"
     CDS             complement(7963..8346)
                     /gene="queF"
                     /locus_tag="KIL20_000587"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HBD2720637.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            complement(8592..11189)
                     /gene="flgE"
                     /locus_tag="KIL20_000588"
     CDS             complement(8592..11189)
                     /gene="flgE"
                     /locus_tag="KIL20_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HBD2720638.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTNYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQ
                     FYTTSKNSVEVTEKGVDAGSLFNAKGQGLNLRDGQGIWVSYADATYSTNKVGVNAFDP
                     NLQQNQTAAFWGTANQKVNLDITLNGVRIQNANIQSIDDAIAYINTFTAPTDTRDGTG
                     VKAVKNKDGSGIDFVNDNADGTTDNMKNINLVVANTNTAGELWNAVWDNNNQTFTFNN
                     TGNGQAGTPTINKNGSSLWTATNITFAPQPPQAATNVQLTGGLNAQIITAHKYIYSSN
                     PVDIGPMYNPDGGPAFQPGANATTRPTEPGSAAYWDAVNGGLLNTNVRTFRTTEDLRE
                     LLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANEQSTVPPNAINGVGN
                     ATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQIKESEQLKLSAFS
                     AGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIIVGT
                     ARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQAT
                     DGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVT
                     ANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQM
                     LQTLIQLKQ"
     gene            complement(11393..11875)
                     /gene="ruvC"
                     /locus_tag="KIL20_000589"
     CDS             complement(11393..11875)
                     /gene="ruvC"
                     /locus_tag="KIL20_000589"
                     /EC_number="3.1.22.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HBD2720639.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            11971..13293
                     /gene="dnaA"
                     /locus_tag="KIL20_000590"
     CDS             11971..13293
                     /gene="dnaA"
                     /locus_tag="KIL20_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HBD2720640.1"
                     /translation="MNPSQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAIIHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKILVKSQS"
     gene            13453..>13947
                     /locus_tag="KIL20_000591"
     CDS             13453..>13947
                     /locus_tag="KIL20_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HBD2720641.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDK"
BASE COUNT         4808 a         2488 c         1958 g         4693 t
ORIGIN      
        1 aaatttcctt ttaaaagcac ctcttatgct tttgatgctt atgaaatcag taaatacttt
       61 aaagatgaat ttttatggaa taaagaattt ggcgatgtaa gacatacttt taaagaagca
      121 actatttgca aatcgagatc tttggaaaat aatataaata atattttatt aaaacttgat
      181 aaaaataggc acttttgctt tttaaaagat aacataaact atgaaaataa aaaggatata
      241 gcgatattta gaggagcagt atatcaaaaa tatcgaaaag aattttttga ttcttatttt
      301 ggtagaactt tttgcgatat aggagatact tcaaaacaac ctagccaatg gaaaaaaaac
      361 tttttaaaca aaaaagaaca aatgaaatat aaatttataa tttctttaga gggtaacgat
      421 gtagcaagca acttaaaatg ggctatgaat tctaattctt tagttttagc tccaaaaata
      481 acttgcgaaa cttggtttat ggaaggaact ttaaaaccaa attatcactt tgctttgatt
      541 gataatgaga atttgtcagc agtaattgaa tattttaaaa gtcgcccaaa agatgcattg
      601 gaaattatta ataatgctca tcaatatatt aagaaatttt tagataagaa aaaagaattc
      661 catataggaa ttttggtttt gaccaaatat ttttattatt ctagacaact tgaacttaac
      721 aaaaaaagag atattttaga attaatcaaa tagtaaaatt actctcatta attctctaat
      781 ttttcataaa aaataaatct ttttatacat atattacatc ataaattaaa aatttgattt
      841 tagttttcag ccaaaaacaa gtaatattgc gataaaatct cagacttata aaggggcatt
      901 agctcagctg ggagagcaca acgctggcag cgttggggtc agcggttcga acccgctatg
      961 ctccaccata tggttccgta gctcagctgg tagagcacta ccttgacatg gtagtggccg
     1021 ttggttcaag tccaatcgga gccaccatca cccttcctta tacaaaggat tatcatgcaa
     1081 aacactatca tacaaaaagc cgtccataaa gatttaaatt ctatacttga aatcacaaaa
     1141 gatgctttaa atgctatgaa agctatgaat tttcatcaat gggatgagaa ttatcccaat
     1201 gaaatagttt ttaaagaaga tatacaagca caagaacttt atgtgtttaa agaaaatgat
     1261 gaaattttag gctttatctg tatcaatgaa aaatttgaac ctgaatttta caaacaagtt
     1321 atttttaaca aaaattatga tgagaaagcc ttttatctac accgtttagc cgtcaaacaa
     1381 aatgcaaaag gcaaaggcgt agcacaaaaa cttttaaatt tttgcgaaaa ttttgccttg
     1441 gaaaatcaca aggcaagttt aagagcagat actcatagta aaaattttcc tatgaattcg
     1501 ctttttaaaa agcttgattt taatttttgt ggaaactttg acatacctaa ttaccaagat
     1561 ccttttttag cttatgaaaa aattctaaac caaaaagctt tttgagtttt tttcataggc
     1621 tttgatttgt gcttcatgtt ttaaagttaa agctatatta tcaagccctt ccaaaagaca
     1681 aattctgtga aaatcatcta aatcaaaaga aaaaatctta tctttaaaaa atactctttt
     1741 ttccaacaaa gaaatttcta tatttttatc ttgggatttt tttaactcat caactatttc
     1801 caaaacctca tctttagcaa gttctatagt gagcaaaccg tttcctaagg cattgttttt
     1861 aaaaatatcc gcaaaagaag gtgcgataat agctctaata ccataatcaa ccaaagccca
     1921 aggcgcatgc tctcttgaag agccactacc aaaattttca aaactcacca aaatagagct
     1981 attttgatat tcttttttat tgagattaaa atccatattt aaaacacttt ctttatcatc
     2041 taaataacgc aaatcatgga acaaatgctt gccaaaacct tgcttagaca ctgcaagtaa
     2101 aaattgctta ggtataattt gatctgtgtc tatattggca tattctaaag gacaagctat
     2161 acctttgtgt ataataaatt tttgcatatt aaactcctaa atactttcta ttatcacaaa
     2221 taacaccttc tatggcacaa gctgctgcac ttgcaggact catcaaatga gtgatagaac
     2281 ctttgccttg tctgcctaca aagttacgat ttgaagttga agcaactctt tgacctgaat
     2341 ttgctttgtc atcattcata ccaagacaca tagaacaccc tgcatatctc cactcacacc
     2401 ctgcctcgat aaaaatctta tcgagtccta aattttcagc ttcttttctt acttgcattg
     2461 aaccaggcac gattaaagct ttaacatttt tatgaatttt gtgccctttt aagatatcag
     2521 cggctatttt aagatcttct aaacgcccat ttgtgcaaga tcctataaat acaatgtcga
     2581 tttttacccc ttctataact tgatcttgct ctaaatttac ataagataaa gcatcaagca
     2641 aagatttttg ctcactttga tttttaaaat cacttatttt tggaattttt tcatctatgc
     2701 caatcacttg cgaaggattt gttccatagc taatttgtgg ttttatcttg cttacatcta
     2761 gagtaatact ctcatcatat tttgctcctt catcgcttct taaactcttc caatactcac
     2821 aatacttttg aaattcttct cctttaggtg caaattcctt tcccttaata tactcaaaag
     2881 tgatctcatc aggagctatc atacctactt tcgctccaaa ttctatagcc atattacaaa
     2941 gagtcattct agcttccata cttagttttc ttataagttc tccgcaaaat tctatagcat
     3001 aacctgtgcc ttttgccgtg ccgtattgtg cgatcaaata taaaatcaaa tccttagcat
     3061 aaacgccttt ttgaaactgc cctttacatt cgattttcat agttttaagt ttggcttgtt
     3121 ttaaagtttg cgttgccatg acatgctcta cttcactcgt gcctatacca aaggctaaag
     3181 ctccaaaagc tccatgtgtt gccgtatgag aatccccaca aactaaagta accccaggta
     3241 aagtaaagcc aagctcagga cctactatat gaactatgcc ttgattttta tctccaagtc
     3301 ctaaaagcct tactccaaat tccttagtat tttgcatcaa agttgtaatt tgctcttttg
     3361 ccatatcaga acaagcattt aaatctatac ttttagttga aacatcatga tctatagtag
     3421 ccaaagttaa atccgctctt gccattctac gcttagccat tttaagccct gaaaatgctt
     3481 gagggcttgt tacttcatgg attaaatgtc tatcgatata aagtatagga agttcgtttt
     3541 tgccttcata aaccacatga gcatcaaaga ctttttcata taaagtttta gccattgtca
     3601 ttctccttta aaatttctaa aatacaatcc cccatttcat cggtatttaa atacgactta
     3661 gcatttaaat ccttagtcat ttttccttgt gccaatgcca aagatatagc attttctata
     3721 tcctgtgcgg cttgttcttc tttgaaacta tactttaaca tcaaagccgc acttaaaatt
     3781 tgagctatgg gattggctat atttaaatga gctatatcag gcgcacttcc acctgctggc
     3841 tcataaagtc caaaaccttt atcattcaaa cttgctgaac ttaacaaacc caaagatcca
     3901 ttaatggcag ctaactcatc actcaaaata tcaccaaaaa gatttgaaca aagcataaca
     3961 tcaaaaatgc taggattttt tacaatctgc atcgcagcat tatccacata catgtactct
     4021 aagtttatat cttgataatc ttttgcaaca tttgccacca cttctcgcca caaaatagaa
     4081 cttgctaaaa cattcgcctt gtcgattaaa tgcacttttt tctttcttat tcttgcactt
     4141 tcaaaagcga tatgagctat cctttctatc tcttttttag tgtaaatttc agtatcatac
     4201 gcactttctt tacctaaatc ttgcttacca aaataaatcc cacctgtaag ctctctaaca
     4261 cataaaatat ccactccttt ttggataatc tcatttttta aaggtgaagt atgagttaaa
     4321 ctttcataaa ttttacaagg acgcaaattt gcaaacaaat taaaatgctt tcttaaaggc
     4381 aaaagcgagg ctctttcagg tctttgatct atgggcaaat tatcccactt aggccctcca
     4441 acagagccaa ataaaatcgc atcactttgc tcacaaagct ttaaagtttc atcacttaaa
     4501 gccactccat gagcatctat acttgcaccg cctattttag cttcattaaa ttcaaaacta
     4561 aaattgtatt tttgcgcgat aaaagttaaa atttttaaag cctctttcat taccaaaggc
     4621 cctataccat ctcctgctaa gacagctact ttataagttt tcatgccatt ttcctttctt
     4681 ctacttttaa agagcgataa atcgcattgt aagcactcac aaaagcttgt gctgaagctt
     4741 ctataacatc tgttgaaatt ccttttccat ggaattttct ccctttaaat tccaaatcca
     4801 catccacttg tccttgagca tctacccctg aactttttgc attgatacta taagctttta
     4861 gcgcaggctt taaattcgtt atcctagcaa tgcagttaaa aactgcttca acaggaccat
     4921 ttcctgtgca agcttcagtt tttaactctt ctttaatacg catacaaaca caagcagttg
     4981 ggatattgcc actaatcacg cttaattttt caagtataaa tttattttct tcttcatttt
     5041 catagcttaa aaacatcaaa gcttccaaat cataatcata cacttgaccc tttttatccg
     5101 caaggcgtaa aaaacgctca taaacatcat ctaaattata agtattttca tcatagccta
     5161 aattttcaag gcaagttttt atcatagccc ttccacttct tgccgtcatt aacatacgat
     5221 tttcatgaat tcctatggca ctagggctta tgatctcgta agtttgccta tttttaagca
     5281 ctccatcttg atgaatgcct gaactatgag aaaacgcatt gctacccact atagctttat
     5341 gcgaaggtat actttcatta gtgatagctg aaactaattt tgaagtttta aagatatttt
     5401 cacatttaat atcagtataa aaacctttta aataatcttt cctagttttt atcgccataa
     5461 ccacttcttc taaagcacaa ttacccgccc tttcgccaag tccatttata gtgcactcta
     5521 tctgtcttgc accttgtaaa atagcactta aactattgcc cgttgccata cctaagtcat
     5581 tgtgacaatg cacagaaatg atagctttgt ctatatttgg cactttgtta aataaaattt
     5641 tgatgatatt agcaaattca cttggcaagg tatagcctac ggtatctggg atatttatag
     5701 ttttagcgcc tgcttttatc gcattttcca ccataaaaca aagattatct atcggagttc
     5761 ttcctgcatc ttcgcatgag aattctacat catcagtata agatcttgct cttataatcg
     5821 ctctttttgc catagacaaa atttcatcaa aatctttttt taatttatct tgcatatgca
     5881 aagtcgaagt ggctataaaa gtatgaattc taaaatgctt tgccactttt aaagcttcat
     5941 aagccatatc tatatcttta tccaatactc tagaaagtgc gcaaatagtt gagtttttca
     6001 ccttagaagc gatcttttgc accgctttaa aatccccttg tgaagatacc ggaaaacctg
     6061 cttctataac atctacgcct aaattttcaa gcgctaatgc aatttgtaat ttttgattga
     6121 tacctaaaga actacctaaa gcttgttctc catcacgtaa agtggtatca aagattatga
     6181 ttttattatc tttcatgatt taatccttta aaaccaaaca gactgaatga attaaaaatt
     6241 caaaaactta acaacaatga taaaaaatta aaaatgtaaa aaatgattaa aaataaaatt
     6301 gagttttaga gtgagagttg cagtagcaga ttaaaagtat tgtctttact tttttgttgg
     6361 actgaattta aaatttcaaa aatttgtttc atcttttcct cctttgttaa aattaatact
     6421 taatgtatca tatttttagt aaatgtgttt gtaaaattct taaattaaga aaattattga
     6481 tataattgta attttaagta acaaaaagga agttgatgtt aaaagaactc ttagagatta
     6541 aaaaagaaat ggaacctgtt atccacgaag ccaatgtgaa attaaatgtc ctagctcgtg
     6601 aagtcatagt ccgaaaaaaa gaatacgaaa tttatgggcc tatggtagat cgtgtttatc
     6661 ttgataatgc catttatgtt aaagttatgt caagtggacg cgatgtaaaa acagacaatg
     6721 tgactataaa aaatggtttt tatatggttt ttgttgcccc tgaaaaagaa agtacaaaag
     6781 atatcaaaaa taaactcaaa gtagcttatg aaggacttga taacaaattt atcgctacac
     6841 ttatacgatc ttgccaacgc tttaaagaga tcataaacaa aacccaagct acacttgcta
     6901 aagcttctaa aatgaatgta gtagtaaaaa caaatttagg cgaagcaagt gctgctctaa
     6961 aatttaacat cactatagaa tatactaaag agaatcaaaa actcactcgt gaaaattcaa
     7021 aatcagcagg aagtttcaga gatactaaaa cttatatcaa tcttgtagta gaaaaaaata
     7081 cagattctca aatttgtgaa aaactacttg atgatgttga aaaatacttt atcggtggag
     7141 gttgatttca ttaatgcaag ttataaaaac ttgcattaga ttaaaattta taattatatc
     7201 ctaaatatac accataattt gtttgtttag gatcgtaaaa gtttgaaccc actttatttt
     7261 gataaaaatt tctagaatta taatgaattt gctctgcttt aaagcctaat tctatttcat
     7321 tatgtggtgt caaatcatat aaagcaccta ttttcgctcc ataaaaataa ccgtcaaaat
     7381 tttgcgacaa agataaaaag cttgttttta aggtaagatc tgttcttgca tatcctccat
     7441 acacacctaa aacagctctg gttttttcaa aaagcttagg agtaaaatca taacctgtta
     7501 aaaatttatg tgtagtaaaa tcaccttcga tttgaatttt aggagttttg ataaaatcac
     7561 taaattcatc agaataatta taaccagcat aaattctatg attttcattt aaacgatatc
     7621 caagttttag accaaacgat ggtatattac ctgaaatatc tccattaaaa ttttgctttg
     7681 tattcttatg ttttaactca ctttttactt gagcatgcat ccaagctgca tcagcaccta
     7741 taaaaaaacc agaattctca tctgctaaag ccaaatttga aaacaaagta gcacttgcga
     7801 taatgcttaa taatttttta ttcataacct aactccttat aataaaattc gatctaaaaa
     7861 atttagatct ttttatatta tatattcttc aaagattaaa taagaatttt ttataaaata
     7921 cttaatcttt acataaaaat atgttaatat tttacttaaa tattattttg gcactaccat
     7981 atcgctacga cattctatca ccgtatgcac atttccacgc gggttaaaat cccccacaac
     8041 tttaatccat tttggtttta atttatcttt taaagtatta taaatttcat tgatacttgc
     8101 ttcatgtgaa acatttctat acataaaagt attgatataa agttttatcg ccttaagctc
     8161 aaccacaaat ttatcaggca tatactcaag ataaatcgtc gcaaagtcag gataacccga
     8221 acgcggacaa caacacataa attcaggtaa agtgatttta atgatatagt catttttagc
     8281 atcatttggc caaatttcca tattttctac atcaaattct ttgatttcct tttcaccata
     8341 acgcataaat ttccttaaat ttaaattcga gcaaaaatta taacaaaata agtttttaaa
     8401 acgattataa tacagataag aaaatgcaat tttattgcaa ctcaccccct agcaagagtg
     8461 agttagcaat aaattgaagg cagttcaagc ctaagcctag tattacaaga ctaccaagat
     8521 aggcttgtaa agcaaggctt gctcccttaa agggagcaaa aaacaatatt ttatagaata
     8581 ctaagcttaa attattgttt aagctggatt agagtttgaa gcatttgatc actcgttgaa
     8641 atggtttttg aatttgcttg ataacctctt tgaatgataa taagctctgt taaagaacga
     8701 cttaaatcca catttgacat ttcaagagct gaggttttca tctcaccacg acctcctgtt
     8761 cctgcttcac ctactacgat attaccacta tttgcagtga ctttaaaaag atttccaccg
     8821 atttcttcaa gacctgagtt atttgccact gaagccattg ctatttttgc tacagcaaag
     8881 gttttaccat tagtaaattc acctaagata tttcctttat catctacacg gatagcatca
     8941 ggttttaagt tacctgaagt ataaccatca gttgcctgtc ctgttagagt tgaagcagaa
     9001 tttgagctta caagaccatc attgcttccg cttgttccaa aggaaagttt aatttgttga
     9061 tttggtgcgg caccattatt tggtgaaaaa tttatcgttc ttggtgtata actagctaaa
     9121 gatccatcat tattaaatct tgctgttcct acgatgatat tgtttggtcc ttcgcctgta
     9181 gtgttaatct cagcaggttc tggcacacgg ataatcattt gccattcatt acccccatct
     9241 tgagtggtgc tttgcttaac aaactgcact tctaaagtat gttttgaacc taaggaatca
     9301 taaatttcaa gtcctgctga aaaagcagaa agcttaagtt gctcgctttc tttgatctga
     9361 tttcctataa ccaaaggacc atcgaaagct ttaaaaatag cagtgaaagc atcattagta
     9421 cttacagttc cttgtttgtt actataagct gttatattaa aactcatatt ttttggatct
     9481 gttgtagtgg catttcctac accattaata gcatttggtg gaacagttga ttgttcatta
     9541 gcattggaaa tagcaaaatg tccatctgcc gttactacta cttttatatt ttgattaata
     9601 tcagctgcag caaaagttcc acttccatca taatcaaccc catatctagc atccctttgt
     9661 aaaagttctc ttaaatcttc tgtggttcta aaagttctta cattagtatt taaaagtcca
     9721 ccattaacag catcccaata agctgctgaa cctggttcag ttggtcttgt agttgcatta
     9781 gcaccaggct ggaatgctgg tccaccgtca ggattataca taggacctat atccacaggg
     9841 tttgaactat aaatatattt atgtgctgtt attatttgtg catttagtcc accagtaagc
     9901 tgaacattcg tagctgcttg aggaggttgt ggtgcaaatg taatatttgt agctgtccac
     9961 aaagaagaac catttttatt aatagtcggt gttccagcct gtccattacc agtattatta
    10021 aatgtaaatg tttgattgtt gttatcccat acagcattcc aaagctcacc tgctgtattg
    10081 gtattggcaa ccacaagatt gatatttttc atattatctg tagtaccatc ggcattatca
    10141 ttgacaaaat caattccact accatcctta tttttaaccg cttttacacc tgttccatcc
    10201 cttgtatccg ttggtgcagt aaaggtattg atataagcaa tagcatcatc aatactttga
    10261 atattagcat tttgaattct aaccccattt aaagttatat ctaaattcac tttttgatta
    10321 gctgttcccc aaaaagcagc agtttgattt tgctgtaaat ttggatcaaa agcatttact
    10381 cctactttat tggtagaata tgttgcatct gcataagata cccaaattcc ttgtccatct
    10441 ctaagattaa gtccttgtcc tttcgcgtta aaaagcgagc ctgcatctac acctttttca
    10501 gttacttcta cagaattctt agaagtcgtg taaaactgag tggttcctgt atcattttca
    10561 tcttcggctc tttgggtttt agtattccat ccatgaacag aatcaagtgc ataaagattt
    10621 ctacttgaag ttcctatatt taaaccgcta tttaaattcg ctttgatggc tacttctgtg
    10681 gattttgctg cagggatatg catacctgga tcgataaaaa tattttgtgg agttcttgaa
    10741 ctatctatag tttgatcatc ccagtttata ttccatcctt ggacaacaaa acctgcattg
    10801 tttacaaaat tcccataagc atcaagttta aaatccccgc tccttgtaag atagtttgta
    10861 agccccccat catcactcac cataaaaaaa ccatcaccat ttatagcaac gtcagtgttt
    10921 ttatctgtgg tttgaactga accttgagaa tgaattctag ttgtagaact tactgaaacg
    10981 ccaagaccga tttgaagtgg attagatcca cctcttccat cagttggagc tgtagcgatt
    11041 ttcacagttt ggctaaacat agtcccaaaa tctgcacggg agtatttaaa accagtggta
    11101 ttaacatttg aaatgttatt accttcaaca tccatcgcaa cttgatgtgc ttgtagtccg
    11161 cttacgccag accaaagtga tctcatcatc ttaaatcctt tataaaatat tgctttaaaa
    11221 aatttaacgc tttggcttta aaaaactttt gcgtttatgt gaagtttaca agcaagttct
    11281 gttccaactt ttgaaatttt ttatgaattt tttaaaaatt tatagaaaaa atttaaaggt
    11341 attttgggag tttatgaagc tttggtcttt tgtgtaatga aaattaccaa aatcacaccc
    11401 taactcttaa atttgctgca tgggttaaag ccactgcaat agcatctgtg atatccaaag
    11461 gcttgatatc tttactaagt cctaaaagtc tttttaccat aaaagcaact tgttctttgg
    11521 ttgctttggc ttttcctgta acggcttttt ttacttgtaa gggagtgtat tctgcaaaat
    11581 ctccatgaat ttgaagaatt tttaaagata gggctccgcg aaattgtgcg agttttaaaa
    11641 cggtttttgg attgtaagca aaaaagatat cttctatagc cacctcatca aaagaatgat
    11701 ttttaaaaat caagtccaaa ccctcgcaaa gctctgtgat ttgatactgt aaggtacttg
    11761 gctttatctt tataagtcct gcttctatga gaatgttttt tcctttgtca gcttctatga
    11821 tagcataacc acaatttctc gaacctggat ctatacctaa aattttcaaa ttcatacctt
    11881 ttgaaaaata aaatacaaaa gcggatttta accttttttt ataaaattta agataaaatt
    11941 tatacattat gcaaaattta aagagagatt atgaatccaa gccaaatact tgaaaattta
    12001 aaaaaagaat taagtgaaaa cgaatacgaa aactatttat caaatttaaa attcaacgaa
    12061 aaacaaagca aagcagatct tttagttttt aacgctccaa atgaactcat ggctaaattc
    12121 atacaaacaa aatacggtaa aaaaatcgca catttttatg aagtgcaaag tggaaataaa
    12181 gccattataa atatacaagc acaaagtgct aaacaaagta acaaaagcac aaaaatcgac
    12241 atagctcata taaaagcaca aagcacgatt ttaaatcctt cttttacttt tgaaagtttt
    12301 gttgtggggg attctaacaa atacgcttat ggagcatgta aagctataat acataaagac
    12361 aagcttggaa aactttataa tcctatcttt gtttatgggc ctacaggact tggaaaaaca
    12421 catttacttc aagcagttgg aaatgcaagc ttagaaatgg gaaaaaaagt tatttacgct
    12481 accagtgaaa attttatcaa tgattttact tcaaatttaa aaaatggctc tttagataaa
    12541 tttcatgaaa aatatagaaa ctgcgatgtt ttacttatag atgatgtgca gtttttagga
    12601 aaaaccgata aaattcaaga agaatttttc tttatattta atgaaatcaa aaataacgat
    12661 ggacaaatca tcatgacttc agacaatcca cccaatatgc taaaaggtat aaccgaacgc
    12721 ttaaaaagtc gttttgcaca tgggatcata gctgatataa ctccacctca actagataca
    12781 aaaatagcca tcataagaaa aaaatgtgaa tttaacgata tcaatctttc taatgatatc
    12841 ataaactata tcgccacttc tttaggggat aatataagag aaatcgaagg tatcatcata
    12901 agtttaaatg cttatgcaac catactagga caagaaatca cactcgaact tgccaaaagt
    12961 gtgatgaaag atcatatcaa agaaaagaaa gaaaatatca ctatagatga cattttatct
    13021 ttggtatgta aagaatttaa catcaaacca agcgatgtga aatccaataa aaaaactcaa
    13081 aatatagtca cagcaagacg cattgtgatt tacctagcta gggcacttac ggctttgact
    13141 atgccacaac ttgcgaatta ttttgaaatg aaagatcata cagctatttc acataatgtt
    13201 aaaaaaatca cagaaatgat agaaaatgat ggttctttaa aagcaaaaat cgaagaactt
    13261 aaaaacaaaa ttcttgttaa aagtcaaagt taagtgaaag gatgtgaaaa ataaattcta
    13321 gagtgtgaaa aaaagaaatt aagcaaagta tgataaaata caaatttgat tattttgctt
    13381 tgaagaattt cacaatttca acaagcttat tattacaacg aatttaaaat taaaataaac
    13441 caaggagaaa aaatgaagtt aagtatcaat aaaaatactt tagaatctgc agtgatttta
    13501 tgtaatgctt atgtagaaaa aaaagactca agcaccatta cttctcatct tttttttcat
    13561 gctgatgaag ataaacttct tattagagct agtgattatg aaataggtat caactataag
    13621 ataaaaaaaa tccgcgtaga atcaagtggt tttgctactg caaatgcaaa aagtattgca
    13681 gatgttatta aaagcttaaa caatgaagaa gttgttttag aaaccattga taatttttta
    13741 tttataagac aaaaaagcac aaaatacaaa cttcctatgt ttaatcatga agattttcca
    13801 aattttccaa atacagaagg aaaaaaccaa tttgacattg attcaagtga cttaagtcgt
    13861 tctcttaaaa agatattacc aagtattgat acaaacaacc caaaatactc cttaaatggt
    13921 gcatttttag atataaaaac agataaa
//
LOCUS       DAEBKH010000028        13844 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.028, whole genome shotgun sequence.
ACCESSION   DAEBKH010000028 DAEBKH010000000
VERSION     DAEBKH010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13844)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13844)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13844
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.028"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            212..1462
                     /locus_tag="KIL20_000592"
     CDS             212..1462
                     /locus_tag="KIL20_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HBD2720642.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNSSLFTNVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGDYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGKIQGK
                     FAQTLTAIITFAIAWLVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFILVMGIVAISAAIHDLL"
     gene            1477..2841
                     /locus_tag="KIL20_000593"
     CDS             1477..2841
                     /locus_tag="KIL20_000593"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HBD2720643.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLC
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAQLEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEIRAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGANAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2849..3370)
                     /locus_tag="KIL20_000594"
     CDS             complement(2849..3370)
                     /locus_tag="KIL20_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720644.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDAL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNEAKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLVFLMICLLLLVMGVINLGLLFKQIRILKSFSKEEMK
                     EFLSQRMKKYTKV"
     gene            complement(3351..4361)
                     /gene="ribD"
                     /locus_tag="KIL20_000595"
     CDS             complement(3351..4361)
                     /gene="ribD"
                     /locus_tag="KIL20_000595"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HBD2720645.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     GKILAIKAHEKAGLAHAELNAIAHAFKSLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDENKIASGGAEFLKKQGIEIEFDI
                     LKEEGKKLLKPFLKWQKEQFKLFKLALSMNGSPFGKIVSNELSRTYAHKIRAVIDLLV
                     VGGETIRKDHPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKTFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            complement(4566..4653)
                     /locus_tag="KIL20_000596"
     tRNA            complement(4566..4653)
                     /locus_tag="KIL20_000596"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4617..4619),aa:Ser,seq:tga)
     gene            complement(4675..4748)
                     /locus_tag="KIL20_000597"
     tRNA            complement(4675..4748)
                     /locus_tag="KIL20_000597"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4714..4716),aa:Cys,seq:gca)
     gene            complement(4767..4855)
                     /locus_tag="KIL20_000598"
     tRNA            complement(4767..4855)
                     /locus_tag="KIL20_000598"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4819..4821),aa:Leu,seq:taa)
     gene            complement(4865..4939)
                     /locus_tag="KIL20_000599"
     tRNA            complement(4865..4939)
                     /locus_tag="KIL20_000599"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4905..4907),aa:Gly,seq:gcc)
     gene            complement(5011..5763)
                     /locus_tag="KIL20_000600"
     CDS             complement(5011..5763)
                     /locus_tag="KIL20_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720646.1"
                     /translation="MLAFFKGLGIGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEIANTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDAILECEFKENQLADFNKLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNTNVNIAPR
                     MLNAKSDNIELSSPIISEKEQILSAKALFICK"
     gene            5836..6855
                     /gene="mutY"
                     /locus_tag="KIL20_000601"
     CDS             5836..6855
                     /gene="mutY"
                     /locus_tag="KIL20_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HBD2720647.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLKKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKEVEDLKKLSGIGVYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKGAKELLNVNHAFDHNQALLDVGALVCVSKNAKCGICPLYDF
                     CQGKFHTELYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMSFVGEFKHGYTKYKLNIKVYHQILNNENKNYEFKTLKELESTALSALSLNAL
                     KLIKL"
     gene            complement(6841..8100)
                     /locus_tag="KIL20_000602"
     CDS             complement(6841..8100)
                     /locus_tag="KIL20_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD2720648.1"
                     /translation="MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAAL
                     PSKDTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMFLFFSIDDMKDYAWRILFVIGGILALGSLFVRKMMNESATKLHQHE
                     DRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGAL
                     FILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVL
                     LFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIEN
                     GFFIYIAIFTIIMLIATLYLPKKSQLN"
     gene            8266..9123
                     /locus_tag="KIL20_000603"
     CDS             8266..9123
                     /locus_tag="KIL20_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HBD2720649.1"
                     /translation="MKFKKIYIELSDICGLKCDFCPSRKGIRGVMSEEKFQNLAHEIS
                     NKAELFTFHLLGDPLLLPNLENYLKIAKSEAMKLEITTSGFYLNSKNQALLLGYENIH
                     QINISLMSFLSQSKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNL
                     KIYEFLAKEFEVKIDTNLSKNRLQRHILLHQNKLFKWPNLKDEPLYKKGKCHALKEQI
                     GILSDGSLVPCCLDAKADINLGNVFENNFDKLFKSPRIKMMKKAFEEDKRIEKLCQTC
                     EFFKARLGD"
     gene            complement(9120..9926)
                     /locus_tag="KIL20_000604"
     CDS             complement(9120..9926)
                     /locus_tag="KIL20_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HBD2720650.1"
                     /translation="MKKILIIMSLFLITLNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAEFLKQEFTQNLKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTHILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(9923..10699)
                     /locus_tag="KIL20_000605"
     CDS             complement(9923..10699)
                     /locus_tag="KIL20_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD2720651.1"
                     /translation="MLKIQDLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGEISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIKEFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKLVKEKNIAVVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            complement(10699..11685)
                     /locus_tag="KIL20_000606"
     CDS             complement(10699..11685)
                     /locus_tag="KIL20_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HBD2720652.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNVFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHTIRLLLKNYDNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            complement(11660..13777)
                     /locus_tag="KIL20_000607"
     CDS             complement(11660..13777)
                     /locus_tag="KIL20_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HBD2720653.1"
                     /translation="MHPNKKAFKLSLFALLLITNLNAQESNEAINLQKVVVSATGFEQ
                     DADSNLRNVISIEGKDLQNKGYVSLEQALERISGISFVNFGLGRNIDMRGQGDKSNIA
                     VKVMIDGRAINVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGSGTRGGVINIITK
                     KQKSDAFAINLKSSAYDHGGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQEGYNEK
                     GYFINTKTYIDINDNSDLTLGYDYFKSKNTSSGYLTKAQAQSDPTQKGNSDNITQINR
                     PEISLDYHYYFDDIWEFNLEAFWQNQKIDYLKDEISMMGTTAYQNGSGFEDTLTGISL
                     KNKLNYANNSYFIFGYEFTNHDAKRKSLVYYSVPGVINYHRMTTLMDMTKQSHSIFAL
                     NSHNFNEFFTLSGGARYEFSTYDTDRSYRNEMSMNIPRPPSDSTTLFDTNKNTNNFAF
                     EITPNFKYSDTGNLYLKYERGFVSPAPAQFVNRNKTGNGIPPYYSSNLKAEIFDTFEL
                     GIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVELSLSQ
                     NFLDDDLIFRESLTYLDAKISKGVNDGMRIPYVSKIKATAGLEYAWNKNFSNFIDLTY
                     FSRAKDGGTIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKRYYTYQ
                     DSINDQYLVGNGRNYYVEFKYAF"
BASE COUNT         4673 a         2062 c         2200 g         4909 t
ORIGIN      
        1 gcatagtctt ccaaattttt attttttgat tgcaaaaccc aaaatatatt tagttttaaa
       61 ataatacttt attgatacaa gtgattgttt ttttataaaa ttaaatttac aaaatgttac
      121 ataagattta aaatattttt tttaaaaaat aattatttat aaatattttg ctaaaataaa
      181 aaagatgtaa tcttaaattt aaggaagaat aatgaatact cctaaatgga ctagtcacga
      241 tacaaggtgg gttttatctc tttttggaac agctattgga gctggcgtac ttttgttacc
      301 tattagtgct gggcttggtg gattgatacc tttgttagtt atacttgttt tagcttttcc
      361 tatgacttac ttagctcata gaaatttatg tcgctttgtg ctttcaagtt ctaatccaaa
      421 agatgatatt acttttgttg cagaaagtta ttttggcaaa ggtggtggat ttttaattac
      481 acttttgtat ttttttgcta ttttacctat tttattggtt tatagtgcta atcttacaac
      541 aactttgctt gagttcttaa tcaatcagtt taatttcaat gcagatctta ctcatgctgc
      601 tcgttggtgg gtgagttttt tgattgttgg agttttggtt ttgatttcta ttcttggtga
      661 aaatgttgta acaaaagcaa tgagttttct tgtttttcct tttattatat ttttatttat
      721 tttttcattg cttttaattc cacaatggaa ttcatcatta tttacaaatg ttgatttttc
      781 cgtaatttca acaagtaatt tttgggttac tttatggctt gttattcctg tgatggtatt
      841 tagttttaat cactctccta ttatttcttc acttgcttgt tattgtaaaa aagaatatgg
      901 tgattatgct gagcctcgcg ctagaaaaat tatttctttg gcaattattc ttatggtttt
      961 tgttgtaatg ttttttgttt tttcttgtgc tttaaccttt acaccagaag attttgcatc
     1021 agcaaaagat caaaatatca atattcttac ttttatagca aataaatttc ctgaagtttc
     1081 tttactagct tatgttgggc ctattgttgc gcttgtggct attagcaaaa gtttcttagg
     1141 gcattatctt ggttctcaag aaggcttaaa tggtatttta tataaagcaa gtaatggtaa
     1201 aattcaaggt aaattcgctc aaactttaac agcgatcatt acctttgcta ttgcttggct
     1261 tgttgcgtat aaaaatccaa gtgttatagg aattattgag gctattggtg gtcctgtttt
     1321 ggctattttg cttttcttaa tgccacttta ttgtatttat cgttttgata ttttggcaag
     1381 atttcgtaat aaatttttag atctttttat tttggtaatg gggatagttg caatttctgc
     1441 tgcaattcat gatcttttat aaattaagga taaaaaatga gtaatttaag catttttaaa
     1501 ataggtgttg gtccttcttc ttctcatact ttagggccta tgcttgctgg aaatttattt
     1561 tgtaaaaaag tcgctaaaaa gcttgatgaa attgatagag ttgaggttac tctttatggt
     1621 tctttgtcat taacaggtaa aggacacttg agtgataagg ctgtaatttg ggggttaaat
     1681 ggcctagaag ctaaaaattt aagcgcagca atacaagatg aagtaaataa aaatgctatt
     1741 gaaaatgctc aaattgattt ttgtggtgag aaaaaacttt gttttaatta tgaaaaagat
     1801 ttgatatttt ccaaagattt tttaccttta catgagaatg gtatgaagat taaagcttat
     1861 gattgtaaag gtgggttagt cgatgaagaa acttattatt ctgtaggtgg aggctttgtt
     1921 ttaacagctg cacaattaga aaaaaaaggt aaaaattcca accaaaataa aaagaaaaaa
     1981 ctagatatag agcttaacaa tgcaaaagaa gctttagagc tttgcgataa aagagattgg
     2041 gatttagcag agctttctta tcgttatgaa ttgcaatttc acactaaaga ggaaattcgt
     2101 gcttattgtc ttgaaatttg ggaagtaatg caagaagtgt attataatgg tacgcatcca
     2161 aatgaagatt atttgcccgg aaaacttcat ttaaagcgta gagccaaagg acttaaagaa
     2221 agagtggcga tgacagctga tcctatgggc attatagatt ttatttcttt atatgctatt
     2281 gcgattgctg aagaaaatgc tagcggagca aaagttgtaa ccgcgccaac aaatggagca
     2341 tgtgctgtta tccctgctgt tatgctttat cttaaaaatc atactatagg ttttagtgat
     2401 gaaaaggcta tagagttttt attaacagca atgcttatag gttcttttta taagaaaaat
     2461 gcaagtatta gcggagcaga agcaggttgt caagcagaaa ttggtagtgc tagttcgatg
     2521 gcagctgcgg ctatggcaac agttttaggg gctaatgctt ttaaagcatg caacgctgct
     2581 gaaatggcaa tggaacatca tctaggttta acttgcgatc cagttgcagg acttgtgcaa
     2641 attccttgca tagaaagaaa tgcctttgga gctattaagg ctataagtgc tgctagaatg
     2701 gcaatgacac gcaaatctac tcctatggta agccttgatg aggttataga aaccatgtat
     2761 gaaacaggaa aagatatgaa ttataaatac aaagaaactt ctttaggtgg tcttgctaca
     2821 aatttaaaaa cagtatgcta aagtgttttt acactttagt gtattttttc attctttgac
     2881 ttaaaaattc tttcatttct tctttggaaa aacttttaag aatacgaatt tgcttaaaaa
     2941 gcaagccaag attgatcact cccatcacta aaagcaataa gcaaatcatt aaaaaaacaa
     3001 gatctatggc tccaaattca ttaatcatag ccaaacttgc aaaaaataca ctcgctaata
     3061 ataaaaaaaa taaaagcaat atttgtttta attttgcttc attaaaatta tcgcaatttt
     3121 gagtgaaatt tctaaaaagt atgatctttt tacccaaatt tgaaactaaa atttcatcat
     3181 tttctttaaa taagccttct tttaaacttt gataaaaaaa gatttcattg tttaaattta
     3241 aagcatcttt gtagcttgat aaggtgtagt ctttgtaaaa aaaggatttt aattcatttt
     3301 tcttttctat tttaaataat cttaaatcat ttctcgcata aaaaaatcca ctaaagttca
     3361 taaatgccat aagtatcact ccctaaaaaa ttcctataaa gtggcttgaa atttaaaggt
     3421 attgtaacat ttttttcatc atttaaactt gaactttgga aaatcaaaaa catatctatt
     3481 tcatctttaa aggttttgag aaaattttct ccaccctcat acattaaaaa tttagcttca
     3541 cttggaattt gggtataaat ttggcggttt ggaactttaa ataaagggat atttttatca
     3601 aaattatcta tattttgacg gcttaagata caaagattag gcgcttttgc tttgcaaagc
     3661 ctagcatcta gtataggatg atcttttctt atggtttctc caccgactac aagcaaatca
     3721 atcaccgctc taattttatg tgcataagtg cgacttagct cattgcttac gattttgcca
     3781 aaaggcgagc cattcataga aagggctaat ttaaaaagtt taaattgctc tttttgccat
     3841 tttaaaaaag gttttaaaag tttttttcct tcttctttaa gtatgtcaaa ttcaatctct
     3901 atgccttgtt tttttaaaaa ttcagcccca ccacttgcga ttttattttc atctttaacg
     3961 ctgatgaaaa tttttttaaa acctagctcg ctaaagagtt ttgcacaagg aggcgttttt
     4021 ccttgatgag agcaaggctc aagtgtgaca aaagctatgc tatctttaaa tacaccttga
     4081 tggtttttgc aaataaactc atgcaaggcg tttgcttctt taggcaatga aatttcaggt
     4141 cttaagcttt taaaagcatg agctatggca ttaagttccg catgagctaa tccagctttt
     4201 tcatgagctt ttatggctaa aatttttcca tttttatcta agattacaca gcctacagcc
     4261 ggatttggat aggttaaaaa ctgatatttc caagcctcat ttaaggctaa attcatataa
     4321 aattctttca tttgcctacc ttgtatttta aaatttgaca tatttttaaa attttatatt
     4381 tttgttttaa gataacaaat tctaaatttt ccatttgtat ttcttatttt taattatatt
     4441 agccatagtt tttctaagtt ttttaggata taacaaaaat agtaagaccg aagtattatt
     4501 tttcatttgt agtatccttt ataatttcag gaatgatata agcttgataa actagaaagt
     4561 cttggtggcc gggagaaagg gattcgaacc cctggaggtg tgaccctcaa cggttttcaa
     4621 gaccgccgct ttcgaccact cagccatctc ccgataaagt aaagttttgc cttttggagg
     4681 cgacatccgg attcgaaccg gagatcaagg ctttgcaggc ccatgcctta ccgcttggct
     4741 atgtcgccct gataatgttg aaaaagtggt gcccgaggcc ggacttgaac cggcacggaa
     4801 gaaaaattcc gagggatttt aagtcccttg tgtctaccaa ttccaccacc cgggcgggtg
     4861 attatggagc gggaaacgag attcgaactc gcgaccccaa ccttggcaag gttgtgctct
     4921 acccctgagc tattcccgca taaatttctg aaagaattga agataaaagt atagcaaaat
     4981 aaacttaaaa ggagtttatt ttgccttaag ttatttgcaa ataaataaag ctttcgcgct
     5041 taaaatttgt tctttttcgc tgataattgg agatgaaagt tctatattgt cagattttgc
     5101 atttaacatt ctaggtgcga tattgacatt tgtatttact tgtaaatttt tcaatacaca
     5161 agttttatta agatctaaag agtaagtttt ttcatattcg tatgatgttt ttaaaagctc
     5221 tttgtagaga ttttctttgt tgttgtttag tgtatctttt gaaaattttg tttgtatggc
     5281 tggtgttgaa acgctgatga aattattttt agctatgata gaattgatgt catttaaaag
     5341 cttgttaaaa tctgcaagtt gattttcttt aaattcacat tctaaaattg catcaaatct
     5401 ttgacctttt ggagtttgta taccatcttt ataggaaaaa ttaggctcta aagaaaaact
     5461 tcctccgcta caaaaatttt ctttttttga gcgttctaaa atttgattga aagtatttgc
     5521 gatttcagct ttttcgctat tatccaatgt gatttttgag cttaaatttt catttgccca
     5581 aaaattaata tttgcatata aaatatcggg ttttagcgta ttgcttactt ctatatttct
     5641 tgaaaaatat aaatcatgat tagagtcttt tttgcctaaa aattctacat taaaaactac
     5701 tcctgcaaca aaaagtaata aacataaaaa acctatacct aaacctttaa aaaaagctaa
     5761 catggatatc cttaataatt taatttgagc taattttagc aaaaaatttt aaaatttttt
     5821 gttatactct catttatgca aaaaaaagag cttgaaaaac tacaagaaaa tttacttctt
     5881 tggtatgaaa aaaatggacg caaaacttta ccttggcgta atttacaaag tcaaaattgt
     5941 gatgaaagtt taaagcatat tgatagagct tatggggttt atatcagcga aattatgctt
     6001 cagcaaactc aagttaaatc agttttagaa aggttttatt tccccttttt gaaaaaattt
     6061 cctactttag aaagtttggc taatgctaat gaagatgaac ttttaaaggc ttggcaaggg
     6121 cttggttact acactcgtgc tagaaattta aaaaaggcgg ctttagaatg tgtggataag
     6181 tttggggcta aattacccaa agaagttgag gatctaaaaa aattaagcgg cataggagtt
     6241 tatacagcag gtgctatagc ttgttttggc tatgatcaaa aggtttcttt tgttgatggc
     6301 aatatacgcc gtgtgctttc tcgtcttttt gctttagaaa atcctagcat gaaagaactt
     6361 gaaaaaggag ctaaagagct tttaaatgta aatcatgctt ttgatcacaa ccaagctttg
     6421 cttgatgtag gggctttggt ttgcgtgagt aaaaatgcaa agtgtggaat ttgtcctttg
     6481 tatgattttt gtcaaggcaa atttcataca gagctttatc caagagctaa aaaaatactt
     6541 tatgagagtt taaatttaaa tctttttttg tttgaattta ataaaaaatt tgcgatacag
     6601 aaaagccaag ataagcttta taaaggtatg tataattttc ctttttttaa agaaggagag
     6661 tataaacttt ctaaagatat gagttttgta ggggagttta agcacggcta tactaagtat
     6721 aaacttaata tcaaggttta tcatcaaatt ttaaacaatg aaaataaaaa ttatgaattt
     6781 aaaaccttaa aagagttaga aagtaccgca ctttcggcac tttctttaaa tgcgttaaaa
     6841 ttaattaagc tgtgattttt taggcaaata taaagtagct ataagcatga tgattgtaaa
     6901 aatagctata tagataaaaa agccattttc tatacctgca tttttaaatt gtaaagcaac
     6961 ccaaggagca gatcctccaa aaacagcatt tgaaatagca taacccaaac ctgtccctaa
     7021 agctcttaca tgttcaggaa aaagttttgc tttaaaaatc ccagcaactg aagtataaaa
     7081 acttaaaata acaaacaata ataccaccaa cataaatgtc aaagaaggat tattttgtgc
     7141 gttattggct ataagtgaaa aaataggata aattcctacc aatgccaaaa tacaaaatac
     7201 aattaaagat cgtttgtgac ctattttatc tcctatatat ccaaaaagag gttgaatgat
     7261 cattagtata aataaagcac ctaagaaaag attattaaca agcattttat ccatacccgt
     7321 attttccata aaagttttag tataagttgt aatagtataa aaagctaaag aacctccaga
     7381 agtaacccca agtaccatta aaaaaggttt ccaagatttg cataatgctt ttaaagtacc
     7441 acgatcttca tgctggtgaa gttttgtagc actttcattc atcatttttc ttacaaaaag
     7501 cgagcctagt gctaaaattc cgcctattac aaaaagtatt ctccaagcat aatctttcat
     7561 atcatcaatg ctaaaaaata aaaacattat actaatgctt gcaacggcca aaagttgacc
     7621 acctattagg gttacatact gaaaagatga gtaaaaaccg cgttttcctt ctgtagcaag
     7681 ttctgaaaga taagtagctg ctatgccata ctccccgcct acactaagac cttgaatgag
     7741 tcttgctatt aaaagtaaga taatagcaag atctcccact gtatctttgc ttggcaaggc
     7801 tgctatcata aaagagccca aagccattaa aaccactgat ataaccatag attttttacg
     7861 acctacttta tcagctaaag agccaaaaag ccaagagcct ataggacgca taaaaaaccc
     7921 tgctgcaaaa accccaaagg cattgatttg ctggataaca ggattatctg aagttgaaaa
     7981 agtatgagca aaataagttg ctgtaaaagc gtagatataa aagtcaaacc actctactaa
     8041 atttccgcta cttgcagcaa taatagagcg aatttttttc gtgcgagtaa gctcttgcat
     8101 aaacccttcc ttaattttag atttttattt aagtatagtg tgatttttgt ttaatatatt
     8161 taaaaataaa gaagagaaat aaaaaagata aaaatatcga taaaaatgtt acatatttta
     8221 ataaatttca taaattttgg taaaatgttt actctaggaa atataatgaa atttaaaaaa
     8281 atatatatag aattaagcga tatttgtggt ttaaaatgcg atttttgtcc ttctcgaaaa
     8341 ggaattcgcg gggtaatgag tgaagaaaaa tttcaaaact tagctcatga aatttctaat
     8401 aaggctgagc tttttacctt tcatcttttg ggtgatcctt tgcttttacc taatttggaa
     8461 aattatctaa aaatcgcaaa aagtgaagct atgaagcttg aaatcactac aagtggcttt
     8521 tatttaaatt ctaaaaatca agctttattg ttagggtatg agaatatcca tcaaatcaat
     8581 atttctttaa tgtctttttt aagtcaaagc aaaatttctt tagaacagta ttttaagcct
     8641 attttagaac tttgcaaaaa gcatttagag caaaaaagcc tttcttttat caatctaaga
     8701 ctttggaatt tagatgctaa ttttaaagca cctaagtcaa atttaaaaat ttatgagttt
     8761 ttagccaaag aatttgaagt taagattgat acaaacttaa gtaaaaatcg cttgcaaaga
     8821 catattttgc ttcatcaaaa taaacttttt aaatggccaa atttaaaaga tgaacccctt
     8881 tataaaaaag gaaaatgtca tgctttaaaa gagcaaattg ggattttaag tgatggaagt
     8941 ttggtgcctt gctgtttgga tgctaaagca gatattaact taggaaatgt ttttgaaaat
     9001 aactttgata agctttttaa atcaccgcgt ataaagatga tgaaaaaagc ttttgaagaa
     9061 gataaacgca tagaaaaact ttgtcaaact tgcgaatttt ttaaagcaag attgggtgat
     9121 taaaaattgt tattttctag ctttgtttta aattcttgaa ttctatctat tatcttagga
     9181 ctaagacgta ataatatatg tgtatctttg ttaaaataaa tacttcctgt tttaactgct
     9241 ttggtatttt tcaataaagc atttgtatct aaaaggttgt ttttagcatt aattccaaga
     9301 atgagtatgt ctggattttg tttcagtata tattctgctg atataacagg tcttgaaatt
     9361 tgactttgcg ggcttaaatt tttaatccct ataagtctta aaatatcagc tattaaagaa
     9421 ttatcattaa aggccattaa agggttgcta gaataaagat aaatcgcact tttatttagg
     9481 ggtttatcgc ttaatttttt taaattttgg gtaaattctt gttttaaaaa ctctgcttct
     9541 ttttcttttt tggtgatttg gcctaaggtt gtgatatttt ttgttatatc ttctaaacgc
     9601 tcggctttta aattgatact tttgatacca aaatttttaa gtccttcttc taaatttaaa
     9661 gaataagagc ttaaaatcac caaacttggt tttaatgcta ctattttttc aagtgaagga
     9721 tttgaaaaag tgcctacgct tgtaagtttt gaggtttgat ctttaggata gatatttgag
     9781 tgttgtaaag tggcaatgcc tacgatttga tcttcagcct taagcataaa aagggtttct
     9841 atgcttgcag gatcaagcac tacaaggcgt tcctttgcat ttagtgtgat taaaaataaa
     9901 ctcataataa ttaaaatttt tttcattttt tctcctttaa agctaaaata taaggtttag
     9961 aatttttata aataatctcg cagtttaaat cataaatttc ttttaaaatt tcttgagtaa
    10021 aaagctcttt actcgttcca aaatacttta tctccccttc ttttaaaaaa aggattttat
    10081 cgcagaacat agaagctaaa tttaaatcat gcaagatagc aacaacggct atattttttt
    10141 ctttaactag tttttcgcaa aggcttaaaa gctctatagc atagtttaaa tcaagggctg
    10201 aagtgggttc atctaaaaaa agaatttttg gctttttaag taaagctctt gctaaaagca
    10261 ttctttgaaa ttcaccccca cttaaagaaa gtatgcttct ttctagaaaa ttttcaagtc
    10321 ttaaatcctt agcaaattct ttaatttcta aaatatcttc tttagaataa gaactaaaag
    10381 cgtgttttaa attcgcatat ttgctcatta aaagcacatc gatgactttt aaaggggtgt
    10441 ttaattctga tttttgaggc acaaatccgc aaattttggc aaattcttta agagaaaaat
    10501 ctttgatatt tgtgttaaaa agacttattt ctcctttatt tggacttaaa tttttaagta
    10561 taagttttaa aagagtgctt ttacctgagc catttggccc taaaattcct ataaaagcct
    10621 gatttttaag ttctaaatga atgtttttta gtaaatcttt ttggtgataa gcaaagctta
    10681 aatcttgtat ttttagcatt ataaaaatct cctagcactt aaagccaagt ataaaaaaat
    10741 aggagctcca aaaaatgcag ttaaaattcc aatcggaatt tgtacagggg ctaaaagagt
    10801 tcttgctaaa gtatcacaaa taagtaaaaa taatcctcca aatgctgtac ataaagggat
    10861 aactaaggca ttatcataat ttttaagcaa aagtcttata gtatgaggaa tgattagtcc
    10921 aacaaagcct ataagtccgc taaaagcaac cgcaaaagat acagccaagg atgagacaat
    10981 gagtaaattt atctttaatt tttgagcatt tacccctaga tttctagctt catcatctcc
    11041 gcttaaaagt atgtttaatt cgtttttatg agcgtaaaaa taaaacaaac aaaaaattaa
    11101 aggcaagatt aaaattccca cacgaaacca agaagcattg cctatatttc ccataagcca
    11161 agcgactatt ttaaaagaat cctcgcctat aagataagtg aaaaaagaag taaaagctcc
    11221 taaaaaagat gaagctgcta tgccgataat gagtaaagtc gctatagaag ctttagaaga
    11281 aattttaaaa actcctaggg caaaaaaggc agagcaaaca aaacctaaaa ttccataata
    11341 ataatcattc aattttaaca aatacgccaa aaccgctcca aaggttgccg cagaagctat
    11401 acctatgata taaggatcgg ctataggatt tgaaaataca ttttgagtga tagccccact
    11461 actagctaga agcataccga ttaaaatcgc cattataatc cgtggtaagc gtccatctat
    11521 gatgatttgt cttaaaattt catcttggct aaagatatat gaaaaaagtt cttttgggtt
    11581 taaattctca tctcctaagc aaagtgctgt aaaagaagcg attatataag ctaccaaaag
    11641 ccctataatc actaaaattt tagaatgcgt atttaaattc aacatagtag tttctgccat
    11701 tcccaactag gtattgatca tttatactgt cttgataggt gtagtatctt ttatcgaaaa
    11761 gattgcgaat tcctgctaaa atttgtaatt ttttataatt atatttcatg ccaatatctg
    11821 ttaaaaaata atcccttatc caagaatttt tagacatttt tcctgtattt tcatctatag
    11881 ttccaccatc ttttgctcta gaaaaatagg ttagatcaat aaaatttgag aaatttttat
    11941 tccaagcgta ttcaagccca gctgtggctt tgatttttga aacataagga attctcatgc
    12001 cgtcattaac acctttagaa attttagcat caagataagt tagactttct ctaaagatta
    12061 aatcatcatc taaaaaattt tgactcagac ttaattctac tcctaaacgg cgagtttgat
    12121 ctatattata atatttccac caagatccac tagtagaatg agggtttcca agataagaaa
    12181 tttcatcttt gcttagggtg taaaataaag ttagattaaa gccgtaaaaa tcccaccaaa
    12241 aatcatcaat acctagttca aaggtatcaa agatctcagc ttttaggttc gacgaataat
    12301 agggtggtat tccattacca gttttgttgc gattgacaaa ttgagcaggt gcaggagaaa
    12361 caaaacctct ttcgtattta agataaagat tgcctgtgtc agagtattta aagttagggg
    12421 tgatttcaaa agcaaaatta ttggtgtttt tattggtatc aaaaagggtt gttgagtctg
    12481 atgggggtcg gggtatgttc atactcattt catttctata agatctatcg gtatcataag
    12541 tgctaaattc atatctagct ccaccggata aagtaaaaaa ttcattaaaa ttatgagaat
    12601 taagagcaaa aatagaatga ctttgtttag tcatatccat taaagttgtc atcctgtgat
    12661 aatttatgac acctggaaca ctataataca ccaaactctt tctttttgca tcatggtttg
    12721 taaattcata accaaaaata aaataagaat tatttgcata atttagtttg ttttttaaac
    12781 ttatccctgt aagtgtgtct tcaaaaccgc ttccattttg ataagctgta gttcccatca
    12841 tagaaatttc atcttttaga taatcgatct tttgattttg ccaaaaagct tctaggttaa
    12901 attcccatat atcatcaaaa tagtaatgat aatccaaaga aatttcaggg cgattgattt
    12961 gtgtgatatt gtcactattg cctttttggg ttggatcgct ttgagcttgt gcttttgtta
    13021 gatagccact gctggtattt ttgcttttaa aataatcata ccccaaagtt aaatcgctat
    13081 tatcattgat atcaatatag gtttttgtgt tgataaaata acctttttca ttataacctt
    13141 cttgatatcc atcaaggtta aaactttgta tatcaaagct aaaagctaaa ttttcattta
    13201 tttgtttggc gccattgata cctaaatttc cacctagtcc accatgatca taagcactgc
    13261 tttttaaatt tatagcaaaa gcatctgatt tttgtttttt tgtaatgata ttaatcacac
    13321 cccctctagt accacttcca taaagcacag atccaccccc aggtatgatt tctatgcgtt
    13381 ctacattatc taaattaata ctatctagcg gggttacacc atgggaatta tcaagaacat
    13441 taatagcacg cccatcgatc ataactttta cagctatatt ggatttatct ccttgtccac
    13501 gcatatctat attgcgtcca agtccaaaat ttacaaagct aatacccgaa attctttcta
    13561 aggcttgttc taaggaaaca taacctttat tttgcagatc tttgccttct atgctgatta
    13621 cattgcgtaa atttgagtct gcatcttgct caaaacctgt tgcactaaca acaacttttt
    13681 gtagattgat agcttcattt gattcttgtg catttaaatt agttattagc aataatgcaa
    13741 ataaagataa tttaaaagct tttttatttg ggtgcaaatt ttactcctta aataaaataa
    13801 ataatgataa tttatatcat aataatttag aacgaaattt atcc
//
LOCUS       DAEBKH010000029        13632 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.029, whole genome shotgun sequence.
ACCESSION   DAEBKH010000029 DAEBKH010000000
VERSION     DAEBKH010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13632
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.029"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..806)
                     /gene="glyQ"
                     /locus_tag="KIL20_000608"
     CDS             complement(<1..806)
                     /gene="glyQ"
                     /locus_tag="KIL20_000608"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HBD2720654.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIR"
     gene            complement(818..1354)
                     /locus_tag="KIL20_000609"
     CDS             complement(818..1354)
                     /locus_tag="KIL20_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HBD2720655.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            complement(1364..1858)
                     /gene="purE"
                     /locus_tag="KIL20_000610"
     CDS             complement(1364..1858)
                     /gene="purE"
                     /locus_tag="KIL20_000610"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HBD2720656.1"
                     /translation="MNFVSILMGSKSDYETMKEAAKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGAKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMPGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            complement(1859..3112)
                     /locus_tag="KIL20_000611"
     CDS             complement(1859..3112)
                     /locus_tag="KIL20_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HBD2720657.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHERGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHVFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     EGKFESSKYEKEIATLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGS
                     FFKCKGKIVLNTPYEILAPLGDVIQTCDNELGKIYQKEDRYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            complement(3109..3804)
                     /locus_tag="KIL20_000612"
     CDS             complement(3109..3804)
                     /locus_tag="KIL20_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HBD2720658.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLNEKFPNVESFSEALELNNQAKKSSKQIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            4007..5437
                     /gene="glnA"
                     /locus_tag="KIL20_000613"
     CDS             4007..5437
                     /gene="glnA"
                     /locus_tag="KIL20_000613"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HBD2720659.1"
                     /translation="MGKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAI
                     NEETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYK
                     GQMYEKCPRSIAKKAMEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTE
                     EGEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHH
                     EVAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHV
                     HMSLWKDGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFE
                     APCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNK
                     TIPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQ
                     HLKFETQVWPVEARPTAYEFKTCYSC"
     gene            complement(5503..6294)
                     /gene="flgG"
                     /locus_tag="KIL20_000614"
     CDS             complement(5503..6294)
                     /gene="flgG"
                     /locus_tag="KIL20_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HBD2720660.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(6323..7135)
                     /locus_tag="KIL20_000615"
     CDS             complement(6323..7135)
                     /locus_tag="KIL20_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HBD2720661.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLENSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            complement(7290..8402)
                     /gene="ftsZ"
                     /locus_tag="KIL20_000616"
     CDS             complement(7290..8402)
                     /gene="ftsZ"
                     /locus_tag="KIL20_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HBD2720662.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            complement(8418..9806)
                     /gene="ftsA"
                     /locus_tag="KIL20_000617"
     CDS             complement(8418..9806)
                     /gene="ftsA"
                     /locus_tag="KIL20_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HBD2720663.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDKVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDAESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            complement(9803..11293)
                     /locus_tag="KIL20_000618"
     CDS             complement(9803..11293)
                     /locus_tag="KIL20_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HBD2720664.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENEILQKLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLSVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AKDYALIQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDVLRPAP
                     YNNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSLVNFKGDDIG
                     FVSRDSSRESVKLSDKILNDSEFAYFLMNVFNTDQNSSYVIINDNKAILYKINKQKLD
                     MNSDKFEQYKTMLEQNLRNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            11452..12390
                     /gene="rsmH"
                     /locus_tag="KIL20_000619"
     CDS             11452..12390
                     /gene="rsmH"
                     /locus_tag="KIL20_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HBD2720665.1"
                     /translation="MILEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKN
                     HPDLKFIACDQDQQALEFSKKRLKDFHNRITFIQSNFSEVLEKISYKEELRGILADIG
                     VSSFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAH
                     FIAEKICLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKD
                     FLGHLENLKPKNCILAIISFHSLEDRIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQ
                     IITKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            12390..13328
                     /locus_tag="KIL20_000620"
     CDS             12390..13328
                     /locus_tag="KIL20_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720666.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLEELDEEYESKHTKKSNIYLKEDLINVKLEEKQSLAKKFFSKMKER
                     KKEENKKTKKIFSFGRKKINKIKNIQTKPKIQTKNDQNPIQDKKEKKESIKSIEKIQK
                     TEPKIQNSQTIEKRPDIKKQPDIKQSLENLQKKITPQENKQELPKPSNQAQEKQQNDE
                     DAQKAKNVLLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQIYYLSRE
                     IATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(13316..>13632)
                     /locus_tag="KIL20_000621"
     CDS             complement(13316..>13632)
                     /locus_tag="KIL20_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720667.1"
                     /translation="CAVVLLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFKV
                     YTRKIISKKIIQKAWALHFPYFAYEKYSIMAGEIYKEALKEEIPKANLEQYVLDKIIH
                     SK"
BASE COUNT         4609 a         2453 c         1789 g         4781 t
ORIGIN      
        1 cgaattttta acatataatc ttgtctttgt gctacagaaa ttgctcctct tgcatctaaa
       61 agattaaaag tatgtgcagc aagcatacaa taatcataag caggtaaagc tagtccttgt
      121 tctaaaatat ttttacattc tttgtaagaa ttttcaaact gctcatttaa gatcttaaca
      181 tcacttactt caaaattgta tttactaaat tcatattcac tttgcttatg cacatctgcg
      241 tatttaattt tttctccatt aaattcactc caaactatat cataaacatt atcaacattt
      301 tgaagataca tagctattct ttcaagacca taggtaattt cagcacttac taaatctact
      361 gctataccgc caacttgctg aaaataagta aattgagtga cttccatacc atcaagccat
      421 acttcccagc ctaaacccca agcacccaaa cttggactct cccaattatc ttcaacaaaa
      481 cgaatatcat gactttttaa atcaaaaccc aaattttcaa gacttttaag atataattct
      541 tggatattat caggactagg tttaatcaaa acttgaaatt gataataagc acctaagcga
      601 ttaggatttt caccataacg tccatcagta ggccttctac ttggagccac ataagcagct
      661 gcccaaggtt tttttcctaa acttcttaaa aaagttgctg gatgaaaggt tcctgcacct
      721 gctggcatat cataaggttg cataatcgca caaccttgct cttgccaata attttgcaaa
      781 ttaagtatca tttgtgaaaa agtcattgta tctctcttta ttgttccata ttttcaatag
      841 gtttttctaa atttttattc atttccaaat caggctctgt cttagctcca aaaatttctg
      901 cggttttact ccacattaat ttatatttac gcttgagaaa ttctatctct tcacgcgcat
      961 gttttagctc attgtttaag gtttctatag tttttctatc ttcatcataa agttcttgca
     1021 tagaataaag ggcgtctttt aaaaatttat tctcattttt taatgcttca agtgtttcat
     1081 ctttagcatc taaaactttt tcatgcaaat ttaaaatagt tcctattgtt ttttcaacaa
     1141 aactttctcc tgctaaagtc attgaattta ccattgcagt ttgagatttt gcagaactag
     1201 gtactacact aaaagtacct tgatgagctt cgatgtaaat tttaccctct tcttctttaa
     1261 aatttaaagc cccattggcc atcataccct taaccacatc ttcatttaaa tgcacaagtt
     1321 tacaaaattc ttcaagttca agataggttt gcatttttat cccttataat aaaacttcta
     1381 cttcttttga atcagataca agtttttttt ctttttcaag acgatcttct ttaagctttt
     1441 gtgctaaatc aacatcataa atagctaaaa tttgcatagc caaataagca gcattgatcg
     1501 ctccagcctt accaatagct aaagttccta caggaattcc actaggcatt tgcaccgtag
     1561 aaaacaaaga atccatactt gcaagattac ttcctggcat aggcactcct aaaacaggtt
     1621 ttgttgtata agctgcaaca gctccagcta aatgcgctgc cattccagct gctgctataa
     1681 aaaccttcgc acctttttct tcagcatttg caatatactc ttttgttctt tttggactac
     1741 gatgagctga tgaaatgata agttcatact ttaccccaaa actttctaaa gttttagcag
     1801 cctctttcat agtctcataa tcactcttgc ttcccattaa aatagaaaca aaattcatct
     1861 atatttcctt tcttaaaaaa cttaatgcac tgattttatt tggtaattgg atttcatgtt
     1921 cattaccgct atgaatttcg ctaaattctt tattgttttt agcaatgagt tttttaaact
     1981 ctataaaata tctatcctct ttttgataaa ttttacctag ttcattatcg caagtttgaa
     2041 tcacatcgcc taaaggagct aaaatttcat aaggcgtgtt taaaacgatt ttccctttac
     2101 atttaaaaaa gcttccatct tcgcttatag catgtacttg atgagaacct tcttctatgc
     2161 ttgtattatg attttgcgtg tcggtttttt ctaaaggacg cgaaacaaga tagccatctg
     2221 taaaaccacg attcttaagc gtagcaatct ctttttcata cttacttgac tcaaatttac
     2281 cctctaaagc atcttgtatg gccattttat aagtccttgt tgtaagcgca acataatatt
     2341 cgcttttagt acgcccttct attttaaaag cactgataca attttcttgc atgatttttt
     2401 ctatataaga acaaagattt aaatccttag aattaaacac atgagtacca ttttcatctt
     2461 cttctaaacg aaataaagta ccattttctg gatttttagc ataaagctca taattaaatc
     2521 tgcaatcatt tgcacaagat ccacgattgc tcattcttcc actttgcaca gagcttatta
     2581 aacaacgccc tgaataagca aaacacatag aaccatgcac aaaagcttca agttcaatat
     2641 cgcaattttc ttttaaagct ttagcatctt taagtcccaa ttctctcgca attacaaccc
     2701 ttttagcacc catatcctta taaacttgag catctaaata atttaaaata tttgcctgag
     2761 tagaaacatg taaagaaatt tcaggtgcaa gttctttaac aagacgcata gctccaacag
     2821 aagctacgat aaaagcatca ggcttcatct cacgcaattt taaaatatgt ctttttaaac
     2881 cttcaatttg agaactcaaa tgaaaaccat ttaaagtaac ataaattttc ttaccacgct
     2941 catgagtata tttgatagcc tcttcaaaac tttcataatt aaattctctt gcagtgcgtg
     3001 atcttaaaga aaaattattc acacccgcat aaaccgcatc tgcgccataa gctaaagcaa
     3061 tttttaattt tgtgaaattt cctgcaggag ctactatttc aggaatgatc atttttgccc
     3121 taaacttgca attaaagctt ctatatcatc attacttaca acatcagcag tactatcacc
     3181 ttcaatatgc actgcagaac ttacacgttt tttatcatca attttacctt caaataaaga
     3241 actcatataa cggcttaaag cacgcattac attaataaca cgttcgattt tttgacgatg
     3301 tatatcttga tactgcattg catccattgc catcatcact tcatcttgtc cgctttgaag
     3361 atttccgaca atctgcttag aacttttttt agcttgattg tttaattcta aagcttcact
     3421 gaaactttcc acattaggaa atttttcatt aagtttagaa aaaatatcaa tatttttttc
     3481 tattgcttta tttatttctt tgagtaaact ttcagaatcc gcaaaaaaat tattaatact
     3541 ttcaagctta tccatcattt ccgttgcttt aagctcgcta tcttttgtaa catcatctaa
     3601 ctgatgtaca actttatgct cctgatttgg tgggggtggt ggccatacta cactaggatt
     3661 aggtttgtaa tcagctattt tgacatcttc taacatcaaa gcatcttctt cggtatttga
     3721 ttcttcggtt tttacctctg cttctgtctc tgaatcaaga tcaacatcac cattcatcaa
     3781 agcatcaagc tcttcttgag tcattttttt ccctttttta aatctagatt ttcaataatt
     3841 gctcaaaatt ataatcaatt ttatctaaaa caaaaatata aatttttatt ttttaatctt
     3901 tttaaattaa atttttaaat ttattaaaaa aaatatatta attaaatctt aattaaaaat
     3961 tttatgatat aattttataa atttaattac ataaaggagt aaaaatatgg gaaaatttgt
     4021 taataatata gatgattttt tcaaattttg caaacaaaat gaagtgcttt ttgttgattt
     4081 tcgttttaca gatatgatag gaacttggca tcatattacc tataatctcc atgcaatcaa
     4141 tgaagaaaca tttcaaactg gcattccatt tgatggaagc tcaatccatg gatggcaacc
     4201 tatagaaaaa tcagatatga ttttaaaacc tgatgcacaa agtgcttttt tagatccttt
     4261 tacagctgat cctactatca tagtattttg tgatgtgtat gatatttaca aaggacaaat
     4321 gtatgaaaaa tgtccaagaa gcatagcaaa aaaagcaatg gaacacctta aaaatagtgg
     4381 cattgctgat actgcttact ttggaccaga aaatgaattc tttgtttttg atagtgtaaa
     4441 aatagttgat actactcatt gttctaagta tgaagttgat accgaagaag gagagtggaa
     4501 tgatgataga gaatttaccg atagctacaa tactggacac aggccaagaa acaaaggtgg
     4561 atattttcca gttcagccaa ttgattcttt agtagatatt cgttctgaaa tggttcaaac
     4621 tcttgaaaaa gtaggtctta aaacttttgt tcatcatcat gaagttgcac aaggacaagc
     4681 tgaaatagga gtaaattttg gcacgcttgt agaagcagct gacaatgttc aaatttataa
     4741 atatgttgta aaaatggtag ctcatttaaa tggcaaaact gccactttta tgccaaaacc
     4801 tttatacgga gataatggca atggtatgca tgttcatatg agcttatgga aagatggggt
     4861 aaatttattt tacgataaag atggatacag tggacttagt caaactgcta taaattatat
     4921 aggtggaatt ttaaaaaatg ctagaagtgt cgcagctttt acaaatccaa gttccaattc
     4981 ttacaaaaga atagttcctg gttttgaagc tccttgtatt ttaacttatt cttgtcaaaa
     5041 cagatcagca agttgtcgcg ttccttatgg cataggtaaa aattcagctc gtatagaaat
     5101 tcgcttccct gatagcactg ctaatcctta tttagctttt gttagtcttt taatggcagg
     5161 tcttgatgga atcaaaaata aaaccattcc tgtgggtcct atggatgaaa atttatttga
     5221 tcttactttg gatgaaatac gtgaaaaagg gatagagcaa ttaccacata ctctaagagg
     5281 aagtttagaa gctttaatcc gacataattc ttatttaaaa cctgtaatga gcgatatttt
     5341 tatcgatgac tatcagcatt taaaatttga aacacaagtt tggccagtag aagctcgtcc
     5401 aactgcttat gaatttaaaa cttgctactc ttgctaaaaa tttaatggcg tttaacacgc
     5461 cattaaataa aaaagaatta aaaattattt attttatatc aactatcgct taagctgatt
     5521 tacaattcct agcatatcat cacttgttgt aattgcctta gaacccgctt cataagccct
     5581 ttgtcctgtg ataagatctg tcatttcttc aacaagctga acattactaa gttctataaa
     5641 tccatgtctt attgttccaa gtccatcttg tcctgctata cccgcaacag gtgcaccact
     5701 tgctcctgtt tcaagataaa gattatcacc catagaatga agacccgctg gatttataaa
     5761 ctgaactagc tccacttggc caatttgagt ttcttgttgc tcccctggta gcattacaga
     5821 aacggttcca tctgtagcaa cattaattgc tgttgcgcct tcaggtattg tcatttcagg
     5881 taaaagtcta taaccatctg aatttacaat attaccttca ttatcttttg taaattgccc
     5941 atttctagta tatcctatag tgccatcagg aagttgtatt tgaaaaaaac cattacctgc
     6001 aatagccata tcaagaccat cagtacttgt tgattttaaa tttccttcag taaaaacttt
     6061 agttaccgct gttggacgca cacccacacc cacttctata cccgaaggag aaagagtagt
     6121 agctgaagtt gaagttcctg catacttcat aacttgatac ataagatcag caaattctgc
     6181 gcgacttttc ttaaaacctg ctgtattaac attggcgatg ttatttgaag taacatcaat
     6241 ttgtgtttgc tgcgctacca ttcccgtagc agcagtatga agtgatctca tcatttttaa
     6301 tcctttttta ttttatttta aattatttaa cagctgcaag cttattgata gcttcttgat
     6361 ttaagtcatc catatgagct gtcataactt tttgatacat ttctaccatt ctgtttgctt
     6421 caatcagtcc taccatttca gtaactggat taacatttga tccctgagaa aaaccttggc
     6481 gaatagcatt ggagttttcc aaatctctaa tgcgggttag atcatctatt ttatagacat
     6541 tatccccatc tttttgcaaa gctcttatat catctacttg tgctacaaat aatcttgcat
     6601 tttgagctcc atcaacctca atgcttccgt ttttatcaac gctaatttga acagcaccat
     6661 taggaatgcg tatgccagca ttctgaggat tattaaaata atcactactt aataccttgt
     6721 atccttgctt atttaccaaa taaccctcat catcaagttg aaaatttcca tctttggtta
     6781 atcttacttc tccatctttg gtttgaacca aataaaaagc atcttctcta gtcattgcca
     6841 aatccaaagg attgtttgtg gcctttaaag aacctagact aaaatccgta tattcttgag
     6901 aaacttgcgg gattccatct attgtagtat ttacaaaacg agatgcatct cttgtgtgat
     6961 tttctatagg caactcatcc tgagtttctt taaaaatcct tttaaaatct gcaataacca
     7021 catcatctct tttgtatcca cttgtattaa tattggcaag attattagta atcacatcaa
     7081 gtttattaaa ctgagttacc attccgccag ttgcttgata atatccattt tgcatatttt
     7141 cacctataaa attaagattt tatagctata aaagcaaaga gtgttccaac ttttaaaaac
     7201 aaagaaaaat aaatatttga aagattatta ggagagaatt ttaaactata aaaagcaaga
     7261 tttgactcaa tcttgcttta aaatcaattt taatccattt gacgacgcaa gaaagtcggt
     7321 gtttcaattt gcgccattat ctcttcatcg taaccaccgc ttaccttttt aagacttaaa
     7381 taaggatttt tcttagaagc ttgagcttct tcggtagatt ttttagctac tgtatctttg
     7441 tcttcaaacc ctgtcgcaat aatagtcact tcaactctat cttccatgct atcatctgta
     7501 gtagaaccaa aaataatctt agcattttca tcaacaattt cttgtatact atttgctgct
     7561 gctgaaattt caaacaaaga gcaattagaa cttgttttaa aatgtaaaat aactcccttg
     7621 gcacctttaa tatccattcc atcaagcaaa ggagattcta tagcgtttga aagagcctct
     7681 tctatagcat tttcaccact agcactacca acgcccataa gtgcgagtcc gcgatgactc
     7741 atgatggttc ttacatctgc aaagtcaaca ttaatatctc cattatcaag caagatagac
     7801 accatacctt ttacagcacg agctaaaata tcatcaacca atctaaaagc atctttaatg
     7861 cctgcttttt tatcaataat gctcaataat ttttcatttt gaattacaag aatagaatca
     7921 ctttcttttt taagctcaag gagaccgctt tcagcaagtt tttttctttg ttttccttcg
     7981 aatgcaaaag gcatagttac aacagaaaca gttaaagctc caatctcttt agctgcttgt
     8041 gcaataactg gagtggcacc cgttccagta cctccaccaa aacctgaagc aataaataca
     8101 atatcacttt gactaagact tgcttttatt tcttcaaaac tttctctagc actttctgca
     8161 cctacctcag gaagcatacc agcgcctaaa cctttagttt ttttctcgcc aagttgaatt
     8221 ttagtttttg ctaatgaaat tgaaatagct tgtgcatcag tatttgctgc aattaaatca
     8281 agatcattta atcccatttt aaccatatgg ttgatcatat taccgccacc gccaccgcag
     8341 cctataacct taatttttgc acctttatta tgttgcattt cttctactaa aaattcactc
     8401 ataaaaattt ctccttgtta aaattgattc ataattttat gccagatatt tgaaaaaacg
     8461 ctaggttttt tttcttttgg ctctttaaaa tctaattgtt cttgtattgc aattgtatca
     8521 ttttcttgca aattttcatc aaaaaaatca gattttattt cactttctgc atctttttgc
     8581 aaaacaatat cttgtttaat ttgacgatta aaattttcaa tttccccttt atatcttaat
     8641 ttttcattag aatcaagttc ataaggcgta aaataccccg ctccatataa acaaagtcct
     8701 atagcacaag tattttcagg atcattaaaa atttcactaa aaccagtaat caaatctttt
     8761 cttgcagtag ctagtctaac tgagcgatta tcaaatgttg caggagctag ctcatcaata
     8821 cctgctaact tagtcattcc acctgttaaa acaactccac cgcctatagc attggcataa
     8881 cgattatcac ttaagatttt tgccaaaatc atcaaagttt cttccgctct tgcataaatt
     8941 acgtttgaaa taatatccaa agaaacttca ttaacctttc tttcatcacc cattgaagga
     9001 atttgtataa gggtattagg ctgttgtgaa agagctgcat aattaagctt gattttttct
     9061 gcttctttta aaggtgtatg caatgccatt gataaatctt gggtaatatt aatcgagcca
     9121 atttgcaaac aatcattata tctaattgaa tttccagtat gaacaaccat atcacaaatc
     9181 gctccaccca tatcaatcaa aacagcacct aattcctttt cgctatcatc taaacaagct
     9241 atagctgaag catatcctga aagaactata ttatccactc ttaaatcagc taattcaact
     9301 gctttcttaa gatttttaat atgagattct tgtgaaatca ctatatgggt tgaaacttcc
     9361 aaacgattac cactcattcc caaaggatca tcaacatgtt caagatcatt aaccttaaaa
     9421 ttataaggca aaacatggat aatttcataa ccacttggta gattggcagt atgcttagct
     9481 gtacttacag cacgatgaat ttctttaatg cctatttcat gatttggaat attaacaaca
     9541 cctatgctat caacgctttt agtataagca cctgatatag acaccacaac cttatcataa
     9601 tgaactccgc tcatcatctc agcacttcta acagcttctt caatagattt agaagcaagc
     9661 tctatattgg taatggcacc ttttttaacc ccgttggttt tcgacttgga aaaaccaata
     9721 atttttaatc catcttcatc tttttgagca ataatggcac aagtctgggt tgagcctaag
     9781 tcaattccta atatattcaa aatcaattcc ctttataata aatttttatc ggatatatct
     9841 ttttaagttc atcaacaagt tcttgcttaa gctcatttgc ttttaaattt cgcaaatttt
     9901 gttcaagcat agttttgtat tgttcaaatt tatcggagtt catatctaat ttttgtttat
     9961 ttattttata taatattgct ttattgtcat taatgatcac ataagaacta ttttgatcgg
    10021 tattaaatac attcatcaaa aaataagcaa attcagaatc atttaatatc ttatcactaa
    10081 gctttacact ctcgcgagaa ctatctcgac ttacaaagcc tatatcatcg cctttaaaat
    10141 ttactaaact atttttagct ttttcttcta aattttttct agcttgttcg cttaaataca
    10201 taggtaaaac ttcttctcta gcttcttcaa aagttttatt tcttatagga tctactttat
    10261 ttagtttaac tatgatatat ccgttattat aaggtgctgg tcgtaaaaca tctccatttt
    10321 tagctttatt caaaagatca attggataat aaacatcaga ttcactaata ttttgatctt
    10381 tttgaaaatt atctttcccg ttttttaaat ctaaaaattt agcattagcc acattcttta
    10441 gttgtattaa ggcgtaatct ttagcaactt catttttagc agactgaaaa tccatcactt
    10501 tacctgcaaa atctttatat tttagtttat tttcatcttg attataaaat ttttctaatt
    10561 ctttgtcgtc aattttctca ttgctaactg acaaaaaata agttgaaatt tcatatattt
    10621 ttttagtttt ataatcttct ttatgttcat tccaaagctt ttttaaatcc tcttcattaa
    10681 tcttaatatt ttttttgtca taatcaattt ttgcaatact taaagcatct tgcatgaaat
    10741 aactagaagc taacattttt aattcttcat ctttgctagg aatattaaaa atttgattaa
    10801 gtttatcggt aattacttca tttgcaagtt gtgtttcata atcttttgga gttaaattat
    10861 tggcatttaa aagttcataa taaattgttt tgttaaaatc ccctgtagga tcttgaaatt
    10921 ctctagtatt tgcaagtttt tgtaaaattt cattctcgtt tacgccaata cccaaatctt
    10981 tggcaaaatt taacaaaagc ttatcttcaa caagggagct taaagctata tttttaatgc
    11041 ctagttgctc agcattttct ggagttaaag caccattgct aatttgatta taataactta
    11101 aaatttgtct atatctagta tcaaattcgc taaaacctat cttttcattt cctacggttg
    11161 caacactcga acttctattg agattaaaat cataagcacc ccaacctaaa aagccagcgc
    11221 caacaaaagc tatagtacta acccatatag taacaacaag atattttttg tgatgttgca
    11281 tccaagtaag catatcattc cttgattaaa tttaaactag atattgtatc gtagaagtgt
    11341 ttaagtggag tttaattata aaatttttac caaaaaatat ttgttcttta aattttatga
    11401 tttttacaat gaaatttagt tataattata gtttataaaa atttattagg attgattttg
    11461 gaaattcctc atatcccagt tttgcttaat gaagttcaag agatttttaa aaatcttaaa
    11521 acaggttatt ttttagactg cactttagga tttggcggac atagtgaagc tttgcttaaa
    11581 aatcatcctg atcttaaatt cattgcttgt gatcaagatc aacaagcttt agaattttct
    11641 aaaaaacgtc ttaaagattt tcacaatagg ataactttta tacaaagtaa ttttagtgaa
    11701 gttttagaaa aaatttcata taaagaagaa ttaagaggta ttttagcaga cattggagtt
    11761 tcttcatttc aacttgataa taacgaaaga ggttttagtg taaattctga ctttttggat
    11821 atgagaatga atcaaaactc caaaatatcg gcttatgaga ttattaatac ttatacaaaa
    11881 gagcaattaa cttccatttt taaagattat ggagaattgc acgatgcaca ttttattgct
    11941 gaaaaaattt gcctagaaag aagtaaaaat ccaatcaaaa gcgccaagga actttatcaa
    12001 atcataggaa aaggcaaaca aaatcataga aaaatttcca aagccacttt agcatttcaa
    12061 gccattagaa tagaagtaaa tcaagaactt aaagtgctta aagattttct tgggcattta
    12121 gaaaatttaa aaccaaaaaa ttgcatttta gcaatcatta gttttcattc tttggaagat
    12181 agaatagtaa aaaatttttt caaaaaatgg tcaaaaaact gcatttgtga tgaaaaaata
    12241 atgcgttgcg aatgtggaaa taaccatagc ctagggcaaa taataaccaa aaaagctata
    12301 agtgcaagca aggaagaact tttaaaaaat tctcgctcta gttgtgctaa aatgcgggct
    12361 ttttatttta ataatttgga caataaataa tgctagaaga tgattttata aaagaacgcc
    12421 aaaacatacg ccaaaaaatg ctgaaatttt ctcgcgctat aaatcaaggc aaaccgcttg
    12481 atgatgattt aagagatgaa atttctagcg atgatatttt aagacgtcgt tttaaaaaaa
    12541 agactcctaa taaattctta gaagaactcg atgaagagta tgagtcaaaa catactaaaa
    12601 aatcaaatat atatttaaaa gaagatctga tcaatgttaa attagaagaa aagcaatctc
    12661 ttgctaaaaa atttttttcc aaaatgaaag aaaggaaaaa agaagaaaat aaaaaaacta
    12721 aaaagatttt ttcatttgga agaaaaaaaa taaacaagat aaaaaatatt caaaccaaac
    12781 caaaaattca aacaaaaaat gatcaaaacc ctatccaaga taaaaaagaa aaaaaagaat
    12841 ccataaaatc tatagaaaaa attcaaaaaa ccgaacctaa gatacaaaat tctcaaacta
    12901 tagaaaaacg acctgatatt aaaaaacaac ccgatattaa acaaagtttg gaaaatttac
    12961 aaaaaaaaat aacaccacaa gaaaataaac aagaacttcc aaaaccatct aatcaagctc
    13021 aagaaaaaca acaaaatgat gaagatgctc aaaaggcaaa aaatgtttta ctagaaggct
    13081 tctctaatgc caccaaagaa gatagaaacc taaatttcaa tcatcttctt tttgcggctt
    13141 tacttgttag ttttgcgtta tttttatttg ctccacaaat ttatattaga aatcaaattt
    13201 attatcttag tagagaaatt gctacattaa gaacagaaga aagcgtttta aacgaagaaa
    13261 ataaagattt aaaaagaaga cttgaaaata tgcgattcca aaatcaaatt ttagattatt
    13321 tagaatgaat aatcttatct aaaacatact gctctaaatt tgcttttgga atttcttctt
    13381 ttaaggcttc cttataaatt tcacctgcca ttatagagta tttttcataa gcaaaataag
    13441 ggaaatgcaa agcccaagct ttttgtatta ttttttttga gattattttg cgagtataaa
    13501 ctttaaaaat atcatatcct ataaatacac aagcagtaac cataacagca ctcactatgc
    13561 ttatatgaaa gtcaagtttt gttaaaaaat aatgagtaat taaaagcaat ggtaacaaaa
    13621 ccacagcaca aa
//
LOCUS       DAEBKH010000030        13550 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.030, whole genome shotgun sequence.
ACCESSION   DAEBKH010000030 DAEBKH010000000
VERSION     DAEBKH010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13550
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.030"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..1493
                     /locus_tag="KIL20_000622"
     CDS             <1..1493
                     /locus_tag="KIL20_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HBD2720668.1"
                     /translation="STRGNENVYYQKLNLALPNLLLEHFAKNTTNLIKLEFQGCSEQG
                     LCYNPQTWYFDLISKKDAFEISKPYKTQKTDKKTKIESEESSIANFLATDNFFWILLS
                     FFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSFIYVFFMSLAYAIAGV
                     IASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRFQTFIHKKSEKGKG
                     VLGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFIMSFGMGIPLLFIG
                     LGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYGILGVFFSVFMGIF
                     EKSFTIISKIKKSILILILAYSLSIFLGGLFGAKNFLNPLNFNTISASKSALSYDYIN
                     NFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQKMQNYKLIKVDVSEN
                     NNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKKLEP"
     gene            1490..2158
                     /locus_tag="KIL20_000623"
     CDS             1490..2158
                     /locus_tag="KIL20_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HBD2720669.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGILDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDIHQIS
                     NAILQVSEPRKPCVKISKIHNNSNFTHEIFKTGLSGWYYKVLQVGQIRKYENIKILEK
                     NSTSLSVFELNQLFYSPHQALRQNPILLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            2209..3552
                     /locus_tag="KIL20_000624"
     CDS             2209..3552
                     /locus_tag="KIL20_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HBD2720670.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(3544..4419)
                     /locus_tag="KIL20_000625"
     CDS             complement(3544..4419)
                     /locus_tag="KIL20_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HBD2720671.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFISYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFAFSLCKKDDIFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKLV"
     gene            complement(4406..5359)
                     /locus_tag="KIL20_000626"
     CDS             complement(4406..5359)
                     /locus_tag="KIL20_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HBD2720672.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNLTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            complement(5356..6798)
                     /locus_tag="KIL20_000627"
     CDS             complement(5356..6798)
                     /locus_tag="KIL20_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HBD2720673.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKVERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            complement(6893..7957)
                     /gene="fbaA"
                     /locus_tag="KIL20_000628"
     CDS             complement(6893..7957)
                     /gene="fbaA"
                     /locus_tag="KIL20_000628"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HBD2720674.1"
                     /translation="MGVLDIVKAGVISGDELNKVYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKFD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKDAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMVKRLEIAFEDLNCINKN"
     gene            complement(7957..8778)
                     /gene="peb4"
                     /locus_tag="KIL20_000629"
     CDS             complement(7957..8778)
                     /gene="peb4"
                     /locus_tag="KIL20_000629"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HBD2720675.1"
                     /translation="MKKFSLVAAALIAGVALNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGSKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            8859..9485
                     /gene="nth"
                     /locus_tag="KIL20_000630"
     CDS             8859..9485
                     /gene="nth"
                     /locus_tag="KIL20_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HBD2720676.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLEEEKLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTGIFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            9482..10132
                     /locus_tag="KIL20_000631"
     CDS             9482..10132
                     /locus_tag="KIL20_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HBD2720677.1"
                     /translation="MKIFIFLLAISLNIFALESYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFEDDTNIPKKYRTTWSDYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
                     LVLYDKEPLYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF"
     gene            10143..10775
                     /locus_tag="KIL20_000632"
     CDS             10143..10775
                     /locus_tag="KIL20_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HBD2720678.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNHGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            10834..11274
                     /locus_tag="KIL20_000633"
     CDS             10834..11274
                     /locus_tag="KIL20_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HBD2720679.1"
                     /translation="MRRLSILLTILIVINITACDSKTENYYKNHPSEAKEKAKECKES
                     GTLSEDCINALKVGVKPTNEESKYSPNTPKKSDNQILEALKQNDLKKEKTTKDINQSS
                     ENNESIIIPPITETPSEIYPSKTTENNQSSIFSDDVNITQEKLP"
     gene            11265..11486
                     /locus_tag="KIL20_000634"
     CDS             11265..11486
                     /locus_tag="KIL20_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HBD2720680.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYRVGFPKDEWEDENISNP"
     gene            complement(11476..12186)
                     /gene="cmoA"
                     /locus_tag="KIL20_000635"
     CDS             complement(11476..12186)
                     /gene="cmoA"
                     /locus_tag="KIL20_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HBD2720681.1"
                     /translation="MMKDELFKQSPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPINASICDLGCSSANFLIFLANLRKDFKLFGVDNSASMVEVAKSKAKAYGL
                     DISFFETNLCEFDFFVCDVFVANYTMQFIRPPKRQELLDKIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(12173..13027)
                     /locus_tag="KIL20_000636"
     CDS             complement(12173..13027)
                     /locus_tag="KIL20_000636"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HBD2720682.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKCLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGKDFLSFLKKEFVNLKFIVVGYDF
                     SFGKNRAYNAKDIEFLSGIKTIIVDEFSIGGIGVHASLIKDFLSKANLQKAKEFLGRD
                     YSIKGKMIKGQGLGSKELFATINLDCKGYFLPQNGVYATLLKSQRKIYKSVSFLGIRS
                     SDENFAIESHILEELGEKFTQGEFFELEFISFLRENQKFQDLKKLKNQIAKDIEQAKE
                     LLRKNDER"
     gene            complement(12993..>13550)
                     /locus_tag="KIL20_000637"
     CDS             complement(12993..>13550)
                     /locus_tag="KIL20_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HBD2720683.1"
                     /translation="LSEIYVSRAALKLKNFLEENDIEIKHKNCLDIGSSTGGFVQILL
                     ENQALKITALDVGNNQLHLSLRTNEKIILHENTDLRAFKSEEKFELITCDVSFISLIN
                     LLYYIDNLALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDFEKECAKLGWL
                     LKNTQKSSIKGKEGNVEYFYYYIKN"
BASE COUNT         4611 a         2253 c         1758 g         4928 t
ORIGIN      
        1 gttctacaag aggtaatgaa aatgtttatt atcaaaaatt aaatttagct ttgccaaatt
       61 tattactaga gcactttgca aaaaatacca caaatttaat caaactcgaa tttcaaggtt
      121 gttctgaaca aggcttgtgt tataatcctc aaacttggta ctttgatctc atttctaaaa
      181 aagatgcttt tgaaatttca aaaccttaca aaactcaaaa aacagataaa aaaactaaaa
      241 ttgaatctga agaaagctct atagcaaatt ttttagcaac agataacttt ttttggattt
      301 tgctaagttt ttttggctat ggacttttac tctccttaac accttgtatt ttacctatga
      361 ttccgatttt atcttctctt atcgtagcaa aaagtaatgc taaattttca aaaaaatata
      421 gtttttttct ctcttttatc tatgtttttt tcatgtcttt agcctatgct attgctggag
      481 ttatagcaag ttttctagga gcaagtattc aaggaatttt acaaaaacct attattttaa
      541 ttctttttgc tctaattttc atagcttttg cttttgctat gtttggagct tttcgttttg
      601 aattgccatt aagatttcaa acctttatac ataaaaaaag cgaaaaaggg aaaggagttt
      661 taggtatagc catcatggga tttttatctg ctttaatagt aggtccttgc gtagcagctc
      721 ctttagcagg tgctttaatt tatatagcca atacaggcaa tgctttatta ggcggtagtg
      781 cgctttttat catgagtttt ggcatgggta tacctttgct tttcataggc ttaggattag
      841 gttttattaa acctggtttt tggatggaaa aagtaaaaat tttctttggt tttgttatgt
      901 tggctatggc tatttggata ctttctagaa ttattgaaga aaattacatt ttaattgcct
      961 atggaatttt aggtgtattt tttagtgttt ttatgggaat ttttgaaaaa agttttacaa
     1021 taatttctaa aattaaaaaa agtattttaa ttcttatttt agcttattct ctaagtattt
     1081 tcctaggggg actttttggg gctaaaaatt tcttaaatcc tttaaatttc aatactatat
     1141 ctgcctcaaa atctgcttta agctatgatt atattaacaa ttttgaacaa ttaaagcaag
     1201 aaatacaaac aaatacaaag cccataatgc ttgattttac tgcatcttgg tgtgaaaatt
     1261 gcaaactttt agatgaatta acctttagcg atgaaagaat catacaaaaa atgcaaaatt
     1321 acaaacttat caaagttgat gtaagcgaaa ataataatga acaaattaaa accatgaaag
     1381 aatttaatgt ttttggccca cctgttttaa ttttctttga aaatggaaaa gaaaaattaa
     1441 aaatcacggg ttttatcagt gctgatgatt tattaaaaaa actagaacca tgaaaattca
     1501 aagtttgcaa atagggaaaa ttaaaaacta taaaaatttc caaagcgcat ttattaaaga
     1561 tacttaccta gaagaaacac aaattgattt tctaggtatt ttagatgatc aaatagctga
     1621 taaaattcat catggaggct accataaggc tatttttgcc aactcttgtc aaaactatcc
     1681 tatatgggaa agatttctta ataaaaagct aaattttggc tcaatgggtg aaaatttgag
     1741 catcgatggg ctttgtgaac aaaatgtttg cataggtgat atacatcaaa tttcaaatgc
     1801 aatactgcaa gtaagcgaac ctagaaaacc ttgtgtaaaa atttctaaaa ttcacaataa
     1861 ttcaaatttt acacatgaaa tttttaaaac gggcttgagt ggatggtatt ataaagtttt
     1921 acaagttgga caaatacgaa agtatgaaaa tattaaaatt ttagaaaaaa attctacttc
     1981 acttagtgta tttgaactca atcaactttt ttactcccca catcaagctc ttagacaaaa
     2041 tccgatttta ttagataaat tagaaaaatt aaactctctc atatctcaaa attggcacga
     2101 aacgatacac aaacgcttaa aaaatactta cgatataagc tatatggata gcttataagt
     2161 ttttaaagtt atttttaggt aaaataattc tttttcgaaa ggataatcat gcaaagacaa
     2221 acatggagta gcacactaac ttatattcta acagttgctg gagcaaccat aggatttgga
     2281 gcaacttggc gttttcccta tcttgtagga gaaaatggtg gcggtgctta tgtattagtt
     2341 ttttgtatag ctatgattat cataggcatt cctgttattt tagttgaaaa tgtcataggc
     2401 agaaaagcga tgacaaatag cgtagatgct ttcaaacaaa aatggcaaag tattggatat
     2461 atgggacttt taggaagctt tggcataatg gcttactaca tggtacttgg aggatgggtt
     2521 ttagtttata tttgggaatt aaccctaggg aattttagtc ttgctaatgt agtaagcaaa
     2581 gaatttactc atcagttttt taacgacaaa atagccttca atcctttagg agttggtatt
     2641 tttaccactg tttttgtaat tattaattat attattttaa aaagaggcat tatagatggt
     2701 atagaaaaat ccgtaaaatt tttaatgcct ttgttattta tctgtcttat tattgttgta
     2761 ggacgcaatt taacccttga tggagctatg gctggagtta aattttatct tgaacctgat
     2821 tttagtaaaa ttttatcacc aaaactttta atcgatgttt taggacaagt cttttttgct
     2881 ttatccctag gttttggggt aatgataaca ctttcatctc atcttaataa aaatgaaaat
     2941 atggcaaaaa ccgctattta tacaggggtt ttaaatacta tcatagctgt tttggctggt
     3001 tttatgattt ttccagcact tttctcagcg ggacttgctc cagatagcgg gccttctttg
     3061 gtttttgaaa ctttacctat agcattttct catatccatt ttggcaccat tgtgtgtatt
     3121 ttattttttg tcttactctt gattgcagct ttaaccacaa gcttaccaat ttatcaagtt
     3181 attattagtg tattagaaga aaaatttaaa tattctaaaa atctttctat taacctaact
     3241 ctaggattta tcttcatact tggtaatctt ccttgtattc taacttatgg gccttggcgt
     3301 gatattgtta tcatcaaagg aaaaaacatt tttgatagtt ttgatttcat tagtggaaat
     3361 attttgtttg ttttaactgc atttttttgc tgcatttacg taggttggat cttaggcaaa
     3421 caagaaagtc taaaagaact tagcaataac aatacactta aaagttcatg gtttggaatt
     3481 tggttttatt atgtaaaata tatagtacct ttgattattt taatcatttt tatctatgga
     3541 attttaaact aattttttaa atttatatct ctctaacata gtggaatttc ctaaaattcc
     3601 accttgatgt atataaagca atggtttttt ccactcttgt tttaatgcta tacttaatcc
     3661 taaaatatca tacaacaagt caaattctat attgcacttt aactttaaat ccatataaag
     3721 ctcataaaat tctttatacg gcttagcaaa gtgatatttt ttatcacttg ttaaaaattc
     3781 taaatttgaa aaatcatagc ttggatctaa tgttaaaatt tgttttttaa gatatttaat
     3841 atcacctaca caagcgcaag taaatacttt aaatttagaa tactttgcca aaaaagctgc
     3901 cgaagtgcct gtacccgaag gtaaaaaaat atcaaaatca agctttaaac tttgactttg
     3961 catttgaatt tcttgagcaa gttccatata gccatattga gcttctaaat tagctatgcc
     4021 ttgttctata aaaatatcat cttttttaca caaagaaaaa gcaaattgct ttaaggataa
     4081 agaatggata ttttctacaa aatcaacacc attttctaaa gctaaagcat agtttccaca
     4141 aggattattc ttaagaaaag tagaaatttt ttcacaagca aaaacaagct tatatgatct
     4201 ttgtttagca aaaatactta atgccgccaa agcattactt tggcttcctc cataacttat
     4261 aaaagattga tttttaggat atctttgatg gatataaaaa gcaagtttcc tagctttatt
     4321 tccattaatt tctcctaata aatcatctct tttaatataa aattcaaatc cgttaaaatt
     4381 gattttttgt ataggactaa ttgttttaat gaaattcaaa gaatttttct acatccttta
     4441 aagcattatc atttttaatg ctaaatttta tttctatgcg acgactctta tctttatctt
     4501 caactccatt gacaaacaca ggatctgaaa aagaacgtcc acttgccatt aaaagctttt
     4561 gaagtttatc gctcttataa aaagtataga taaaattcat cacctcataa gctctttttt
     4621 gcgacaaatc taaattataa atataagatc catcactatc agtatgtcct tcaataatga
     4681 tattttcaat gttggaaaaa atttttggat cttcaagaat agcatcaaaa tattcgctta
     4741 agatttttct caaacttgcc tttgcctcat tttttaacac ataagaatct ttatcaaaaa
     4801 gtacttcagc aggcaaagaa atagatcctg tcttttcatc tatagtgata ttattatcaa
     4861 gcttactttg taattccttg cttaaatttt cacgaatcaa accaagattt tgcacctttt
     4921 ctttagcttt ttgaaaatct tcttgtaaat ttttaagctc ttcatctttt ttctctagtt
     4981 gacctagtaa aatcaaaatt tgcttatctt tattatctaa agttaagttt aaatctttgc
     5041 ttaactgctt gtaatttgta atattagcct ctaattctgc tttttgagaa ttagcaagat
     5101 ttaaagcact agaagcattg tttaaatcag aacttagttt aaacactatg gcttctttat
     5161 ttctaagctc ttctttgctc tcctctaagc gtgcctcttg tttattgaga ttatctttga
     5221 tttcttttaa atcactttga gttaaaacat attttacaac aatagcacct attagcaaaa
     5281 taaaaacaaa cagcaatcct gccattaaat cagcataagc tatccaaaaa ttgctatctt
     5341 cttttgactc atttttcatt tattttcttt atcttcattt tttagctcat cattgctttc
     5401 ttgcttagat atttctgctt gaatttcatc ttgattttct tcagtcttag actctgaaaa
     5461 atcttctatt tgtttggttt cattttcttt attctgattt tcatctccag aaagcttgct
     5521 catcatttga cttgtttctt catcaagtgc tttcatttct tttttaagct catccatcat
     5581 tttgatttta gcatcgatac ttttttcttc ttcatatact tctttaaatt tatgcatacc
     5641 ttcaaacaag cttgctttaa atccttcaaa aaccttttct tgactttcca acattgcttt
     5701 ttcataaagt tcaaaatttt taccaaaacg ctctactttt tcatcgaatg cacttagcgt
     5761 cttatcaaga tgatgaattt tatcactact gatatcgagc aagcgattat attgttctga
     5821 cattcttgta ttgatttctt ttaaattttg attgagtaaa cctataccat ttaacatttc
     5881 actataaagc tttccaagat cgcgttgatc tctttgtgct ttactaagct cacccatggt
     5941 ttgtttgatg tgttcactac ttaatctaat agccttttct tctacattta gcatatcttg
     6001 gaaaatacca aattttctat caatagcatg atcaagctct gcaaaaaaat catcattact
     6061 aacttgttta aaaattgctc caattttttc aaaatgttgc aaactctcgg ttaaatatct
     6121 ttgatcaagc tcttcttttg tccaaaaaaa tccacttgta gcgttttttt gacgatttaa
     6181 caaacgatct attttacttt taccatattt ttcaaaaaac atccaccata atgcaagaaa
     6241 aattccataa attgaaacat aaaaagcagt tcctactccg cttaacaaat ctgcaatttc
     6301 ttgttctaaa gcggctgtat cactagagct aaaatttggc attgaaaaag ctatgctgat
     6361 aaaagttcct aaaattccca tcattggaaa aattgccgaa cctatactag caaaattctc
     6421 atttcttgca cctttaatat atgtataagc aaagtcatca aaattggcat ttgatttcgt
     6481 gtctttccct atggcaagaa aatgcctcat aatatgtctt tttaaagcct gtttaaattc
     6541 atctttttgt tgttcaaaaa tactatacgc atactcagca ctatgtctag caaaaatcaa
     6601 tgctgtaaaa aaaatcacac ctgtcataat aaccgtatgc aattcaacct taaagtcaat
     6661 tacattaaaa taacccaata aaatcaaaat ataaagaaaa gctggaataa aaataatttt
     6721 aaaataaacc aaagaacctc ttgcgtcttt gccttcaggc aaaacaagtt ctgaaatttc
     6781 atctgattta atatccatga aaccaatacc tcattaaaaa ttttatttta aagattgcta
     6841 ctcaatttga taaaaatttt taaaacaaaa taaaactaag cctttaaaat gcttagtttt
     6901 tgtttataca gtttaaatct tcaaaagcaa tttcaagacg ctttaccata ctttcttcac
     6961 cgcttcttaa ccaaacacgc ggatcatagt attttttatt tggcttgtca tcaccttctg
     7021 gatttccaat ttgtccttgc aaataagccc tatttttaag ttcatattca cgcaccccat
     7081 cccaaaaagc ccactgggta tctgtgtcaa tattcatctt aattacgcca tagcttactg
     7141 catctttaat atcttttagc tcgctaccgc taccaccatg aaatacaaaa tttataggct
     7201 tatcgctatt taaagcaaat ttatctttta caaatttttg cgaatttttt aaaatttcag
     7261 gttgtaaact aacatttcct ggcttgtaaa ctccatgtac atttccaaaa cttgctgcaa
     7321 ttgaaaattt atcactaatt tttccaagtc tttcatatgc aagtgctaca tcttctggtt
     7381 gggtataaag cttggaatta tcaatacctg tattatccac tccatcttct tcgccacctg
     7441 tacaacctag ttctatttca agcgcgacac ctaaagcatc aaatttttga agataaactt
     7501 cacaagtgct aagattttct tctaaacttt cttcgctaag atcaagcata tgagaactaa
     7561 ataaagcttg tccatgggtt tttttatatt gtgcatttgc ctcaataagc ccatcaatcc
     7621 aaggcaaaag ttttcttgca gcatgatcag tgtgtaaaat cacaggtaca ccataagctt
     7681 tagcaagtaa atgcacatgt ttagccccac taattgcacc taaaacttct ccattaggac
     7741 aatttttccc tgcataaaat tttgccccac catttgaaaa ctggataata actggagagt
     7801 taactttttt tgcagcttct aaaactgcat taatagaatc agttcctaca acattaacag
     7861 cagggatagc aaaaccctct gctttagcat agtcataaac tttattaagc tcatctccgc
     7921 taatcacccc tgcttttaca atgtctaaaa cacccattat ttatattcca ctttagcact
     7981 atttaaaaga tcttggcctt tttgattgat aactttttta aattcttcaa atttaagtcc
     8041 gttttcaata ccttgtttta cttcatcaaa tttgatttga cctttagcct gcgaattttc
     8101 ttttaagatt acatgataac caaaattcgt ttttactgga gttgtagtaa tagtaccatt
     8161 tttaagtgcg aaagcagcat ctgtaaaagg ctttaccata gttgattgat caaaccaacc
     8221 aagctcacca ccttggtttt ttgaacctgg atcaattgat ttctctttag caagctcgct
     8281 aaatttagca tctagttctt taccttttga acctttaagt tcgttaataa tatccttagc
     8341 ttctttttct gtcgctacta agatatgttt tgcttgcact cttgcaggtt ttacatattt
     8401 gtctttattt tgatcataaa aagctttaac tttagccgca tcaattttaa tagtatttaa
     8461 aattttctct tgataaacat taacaagtat tgcatctttt gcacgatcaa gttcttttgt
     8521 atataaagga tctttttcta aattttgttt tttagcatct tgcaaaatta aatcttgcat
     8581 aatatattgc tgaataagag cttttttttg attatccggc aaagttttaa aatcctgtcc
     8641 tctaagcata ggggcaaaaa attcacttac ttctgtatca ctaatgctct tgccattaac
     8701 agtggctact gtagctgcat ttacatttaa agctacacct gcaatcaaag ctgctgcgac
     8761 taaagaaaat tttttcatta ggtttccttt ttaataaaat gtatataaaa tcaattatat
     8821 ctaaacttgg tttaaagcta attaactaaa attaaaaaat gaaaagaaat ttagaaatca
     8881 aagaactttt tttaaaacat tttgacaagc ctgtaacaga gcttaaattt tcaaatttat
     8941 atgagctttt agtctgcgtg atgctttcag cccaatgcac tgataaaaga gttaacctca
     9001 tcactcctga tctttttaaa gcttatcctg atatcaaatc ccttgcaaat gcaaatttat
     9061 caagtcttaa aacctatata caaacttgtt cattttttaa taataaagca caaaatctta
     9121 taaaaatggc aaaagcagtt tgtgaaaatt ttgacggaga aattcccctt gaagaagaga
     9181 aattaaaatc cttggcaggc gtaggacaaa aaaccgctca tgtagtttta atagaatggt
     9241 gcggagcaaa tttcatggct gtagatactc atgtttttag agtttctcac cgcttaggac
     9301 ttagcaaagc aaaaactcca gaagctacag aagaagattt aacaggcata tttaaagaca
     9361 atcttaacta tcttcatcaa gccatggttc tttttggacg ctacacctgt aaagctaaaa
     9421 aacctttatg taaagaatgt tttttaaatc atctttgcaa aagtaaagat aaggaactta
     9481 aatgaaaatt ttcatctttt tactcgctat atctcttaat atttttgcct tagaatctta
     9541 caaacctagt gctgattttt cttcttattt taacaatata aattgctcgc aaatcttaga
     9601 taagtttttt tatctaaatt gctatgatta taaactcaaa ggcacaaaag ccgttgctta
     9661 taaagtagaa gcttcaaatt taaaagataa acaaatcaaa aaacgccctc gctttgaaga
     9721 tgatacaaat attcctaaaa aataccgcac tacttggagt gattataaaa acagtggtta
     9781 cacacgagga cacactgcgc ctaatgcttc ttttagcttt agtaaagctg ctcaaaattc
     9841 agtattttta atgagcaata ttaccccaca aattgcacaa ataaataata aaatttggaa
     9901 tgaaatcgag caaagagaaa gaaatttggc tttcaaattt caaagtatcg aagttttaaa
     9961 tttagtactt tacgataaag aaccactata cattaaaaac cgtattgcta taccaagttt
    10021 ttatgtaaaa attattaaaa ctccgaaatt taaagaatgc tatcaagtac caaaccatga
    10081 agtaaatgat gaaaatatta aacagtatca aataaattgt gataaatttt aaggtataaa
    10141 ttatggagat aaatgctctt acgataacca ctctttatat cataggtatt tccgcagaag
    10201 gaatgacagg ggctttagct gcaggacgcc ataaaatgga tctttttgga gttattttta
    10261 ttgctctcgt aacagcaatt ggaggcggaa gcataagaga tgtgctttta ggacattatc
    10321 ctttaacttg ggttaaacat cctgaatata ttattttaat ctgtttttgc gcccttgtag
    10381 ccacaaaaat tccgcgcgta gtaaccaaac ttgaaacttt atttctaact cttgatgcta
    10441 taggacttgt tgtttttagc atacttggag ctcaaatagc catagatcaa aaccatggct
    10501 ttatcatagc cgttgctgct gctgtaatca ccggtgtttt tggtggaatt ttaagagata
    10561 ttttatgtat gagaatcccc ttggtgtttc aaaaagaaat ttatgcagga attgccataa
    10621 ttgcaggagc aatctattat tctctaataa tttggcttga gcttaatgct ctagtttgca
    10681 cacttttaac tctttttata ggagtttttg caaggctttt agctatcaaa tatcaatggt
    10741 ctttacctat tttttcttac aatgaagaaa aataatttat cgttgcttta tacaagtttg
    10801 ctaagatatt aaaaaatttt aggagattga taaatgcgaa gactaagtat tttacttacg
    10861 attttaatag ttattaatat aacagcttgc gatagcaaaa cagaaaatta ctacaaaaat
    10921 catcctagtg aagcaaaaga aaaagcgaaa gaatgcaaag aaagcggaac tcttagcgaa
    10981 gattgtatta atgcattaaa agttggtgtt aagccaacaa atgaagagag taaatacagt
    11041 ccaaacacac caaaaaaatc tgataatcag atattagaag ctttaaaaca aaatgattta
    11101 aaaaaagaaa aaaccacaaa agatattaac caaagttcag aaaataatga aagtattata
    11161 ataccaccta taacagaaac accttctgaa atttatcctt ccaaaacaac agaaaacaat
    11221 caaagttcta tctttagcga tgatgttaat ataacacagg aaaaattacc atgaaaataa
    11281 ctcttttttt aagccttatt ggtatatttt ttgcagcatg cgaacaaacc aaaagtgtag
    11341 aatattatca aaatcacccc gaagaagcaa aaaaaagaag tttagaatgc agacacaaag
    11401 ctatcatcag tcaagattgt gttaatgcgt atagggtagg ttttccaaaa gatgaatggg
    11461 aagatgaaaa tatttctaat ccttaaaagc tatgaaagtt tcaaaatttg cccatttaaa
    11521 aatactttct attttcttaa aacctgcctt ttctagcatg tttaaatttt ctttttgact
    11581 ataaggaatt aaaacatttt ctaaagcttc tcttttggct gcaatttcaa atttagaata
    11641 accttgtttt tctttataat ctgcataaag ttctatgata tttttagaca aaaaagcatc
    11701 ttcataaagg attttttcac tcataatcaa aatgccttta gagtttaaat ttttataaat
    11761 tttatcaagt aattcttgtc ttttaggagg gcgaataaac tgcatggtat aatttgccac
    11821 aaaaacatcg caaacaaaaa aatcaaattc acataaatta gtttcaaaaa aacttatatc
    11881 aagcccataa gctttagctt ttgactttgc aacttcaacc atagaagcag aattatccac
    11941 accaaaaagt ttaaaatcct ttcttagatt tgccaaaaaa atcaaaaaat tagcacttga
    12001 gcagcccaaa tcacaaatac ttgcgtttat aggtaaaatt ttagccaata aattgccaca
    12061 aagttctaaa ttttctctat aaaatggcac agaacgattg atcatatcat caaaaacact
    12121 agccacgctt ttatcaaatt caaattgttt tttagggctt tgtttaaaaa gttcatcttt
    12181 catcattttt ccttaataat tctttagctt gctctatgtc tttggcaatt tgatttttaa
    12241 gtttttttag atcttgaaat ttttgattct ctcttagaaa agatataaac tcgagttcga
    12301 aaaactcccc ttgtgtgaat ttttcaccca attcttctaa aatatgactt tctatagcaa
    12361 aattttcatc gcttgacctt atacctaaaa aactcacact tttataaatt tttctttgac
    12421 tttttaacaa agtagcataa acaccatttt gaggtaaaaa ataaccttta caatctaaat
    12481 ttatagtcgc aaaaagttct ttagagccca aaccttgtcc tttaatcatc ttccctttga
    12541 tactataatc tcttcctaaa aattcttttg ctttttgcaa atttgctttt gataaaaaat
    12601 ccttaattaa acttgcatga acacctattc cgcctatgct aaattcatca actattatag
    12661 tttttatccc acttaaaaac tcaatatctt tagcattata agccctattt ttcccgaaag
    12721 aaaaatcata tcccactact ataaatttca aattgacaaa ttcttttttc aaaaagctta
    12781 aaaaatcttt accatctaaa gattttatac tttcaaaatc cacttctata actttttttc
    12841 ctgaaatttc ttctttttga cgatttgaac aaagaaattg acccttaaat ttattaataa
    12901 ctaacaaagc cccattctca tctaaacatt ttacaagctt tagatgtcct aaatgcatac
    12961 catcaaaaca acctatggct aaagaagtaa tattaatttt tgatatagta gtaaaaatat
    13021 tcaacattac cttcctttcc tttaatgctt gatttttgcg tattttttaa aagccaaccc
    13081 aatttagcac attctttttc aaaatccatt cttgccttta agattgcctt atcatctttt
    13141 aaaacaccct ttttatctct tttgatattt ttccctactt caaactgagg cttaaaaagt
    13201 aagataattt cctttaaagc taaattatcg atataataaa gtaaattaat aagagaaata
    13261 aaactcacat cacaagtaat aagttcaaat ttttcttcac ttttaaaggc tctgagatct
    13321 gtattttcat gcaagataat tttttcattt gttcttaaac ttagatggag ttgattgtta
    13381 cctacatcaa gagcagtgat ttttaaagcc tgattttcaa gtaaaatttg cacaaaacca
    13441 cccgtactag atcctatatc aagacaattt ttatgtttta tttcaatatc attttcttct
    13501 aaaaaatttt ttaattttaa agccgccctt gaaacataaa tttcacttaa
//
LOCUS       DAEBKH010000031        13464 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.031, whole genome shotgun sequence.
ACCESSION   DAEBKH010000031 DAEBKH010000000
VERSION     DAEBKH010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13464
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.031"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            33..1625
                     /gene="yidC"
                     /locus_tag="KIL20_000638"
     CDS             33..1625
                     /gene="yidC"
                     /locus_tag="KIL20_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HBD2720684.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVVYDYFFIPKQPLKIEQNIT
                     QQNQQNTSINNTPNIQNTTTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DKKYQNEKGEFINLVSKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDANKNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGVTMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKQAEHEK"
     gene            1622..2440
                     /locus_tag="KIL20_000639"
     CDS             1622..2440
                     /locus_tag="KIL20_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HBD2720685.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFASSKNHKPETHEPKQENKIEIKNEKNKIQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYNEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQSVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAEFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            2433..3761
                     /gene="mnmE"
                     /locus_tag="KIL20_000640"
     CDS             2433..3761
                     /gene="mnmE"
                     /locus_tag="KIL20_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HBD2720686.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DAIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYLNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            3772..5958
                     /gene="purL"
                     /locus_tag="KIL20_000641"
     CDS             3772..5958
                     /gene="purL"
                     /locus_tag="KIL20_000641"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HBD2720687.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGDIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPMRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVMGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPTSEPKYLSEIKNYKFE
                     LKSSIQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGKLGASVIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGESLGEFGGSMVMKIQDKKVSGSLKELDYKAELALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGANLTSDFDDEKMIFDESASRAIIGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDSIELSKAELDKLYFESFKEQIQ"
     gene            5955..6725
                     /locus_tag="KIL20_000642"
     CDS             5955..6725
                     /locus_tag="KIL20_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HBD2720688.1"
                     /translation="MTLVLIILVVLVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERMDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSTKKELSLDEAFAILELPNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEELKIGVEKFQKINEAYEKVKKHLER"
     gene            6728..8260
                     /gene="purH"
                     /locus_tag="KIL20_000643"
     CDS             6728..8260
                     /gene="purH"
                     /locus_tag="KIL20_000643"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HBD2720689.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFRANFKALKSEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            8359..9951
                     /locus_tag="KIL20_000644"
     CDS             8359..9951
                     /locus_tag="KIL20_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HBD2720690.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     DTVSTSVFQTMRMAMNLGDPEKIKEAIEDAKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENVNGVVHLRLIRPLIADESCVACHANANVGSVIGVMDI
                     SHSLEGVQKDISKTSQSYIIIFTIALIFTLCVVLLMLKVVVGKPVLELLNHAKELAQG
                     SGNLKARISVKGQDEIALACGYINQFIEKTHKAVSGASHNSKNVEKQSNLLNSNAISL
                     SDISSQSHKQIDQSFKLGANVGNELGELASLSNKANSANEKSFLLLEQMLKSLFNVAN
                     KVSTVSQNENELAKKVENMVNQAGNIQKATQMMDEIADKTNLLSLNAGIEAARAGAFG
                     RGFSVIAEDVRQLAQNSGEFLGNVAQITKELLQSINEVSAELKKNAQSVQALNDDTAL
                     LVDDANEVKLCNEDARALVTQCTEKIKISQENIQNLLSRMQENVEVSEKNEEISKILL
                     QVADELKIVCHNLESELNQFQI"
     gene            9961..10395
                     /locus_tag="KIL20_000645"
     CDS             9961..10395
                     /locus_tag="KIL20_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HBD2720691.1"
                     /translation="MKKTLQIALAAAFFAGCASTSVTSSTSKGNNELVQNQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGTFKISNENGKLVLSNDEMKIFFK"
     gene            10494..11471
                     /locus_tag="KIL20_000646"
     CDS             10494..11471
                     /locus_tag="KIL20_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agamatine deiminase"
                     /protein_id="HBD2720692.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKAVS
                     EFQKVLLIAPKQSDFENFKDIKNVEYFKCDTNDTWIRDFGAIDIVENGRFKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDTKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLIELPIPKPLYYEGRRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPNHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            11468..12355
                     /locus_tag="KIL20_000647"
     CDS             11468..12355
                     /locus_tag="KIL20_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HBD2720693.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKKQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            12352..13224
                     /locus_tag="KIL20_000648"
     CDS             12352..13224
                     /locus_tag="KIL20_000648"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HBD2720694.1"
                     /translation="MKIALIQQKFHSNKEQTIKKTCEFIEEASKQGAELICLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLITSLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFDKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGVEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFADLTKRFID"
     gene            complement(13236..>13464)
                     /locus_tag="KIL20_000649"
     CDS             complement(13236..>13464)
                     /locus_tag="KIL20_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720695.1"
                     /translation="IADNNIAIHNIWGLRKDTTQRLLISSSVITSLEIGKNEILEDNL
                     LLSRLKEISFINLNEQEKEQIKSYLENIQNK"
BASE COUNT         4829 a         1672 c         2598 g         4365 t
ORIGIN      
        1 cttataaaaa tcatctttaa aaggacaaat cagtgaataa ttcaaataat atttttcagc
       61 aaaagcgtat acttttggct gttgtgattt cttttttatt ttttgttgtt tatgattatt
      121 ttttcattcc aaagcaacct ttaaaaatag aacaaaacat tacacaacaa aatcaacaaa
      181 acacaagcat aaataacact cctaatatac aaaataccac cacaaatact ccaagtgcag
      241 ctttagtttc gcaagatagt gtgatatcta aggttcaaag caagcatttt gaagcacaaa
      301 ttgactcttt tggtagaatt tctgcttttt atttaaaaga taaaaaatac caaaatgaga
      361 aaggagaatt tataaatctt gttagcaagg aaaatagtcc ttatccttta gaaatgcgtt
      421 ttagtgatcc aagtattaac tcagaggctt ttaaaattcc ttatgttgct aacgctagca
      481 atctttttgt tgatgaaaat ggaagtcaag ttttaaaact cactcaaaat ctttctggat
      541 tgaaaatcga aaaagatatt actttttatc caaaaggaaa ttatgagata gaagttaaac
      601 tcagcaagaa tgcaaattat tttataagtc caggatatcg tccaaatatt gccgtagata
      661 gttatacagt tcatggtgct ttggtaatgg ataataaaga aaccatcgaa acttataaag
      721 atggagatgt agaaaaggat gaaagtgcta ataatgtcgt aatgacttcg gcttttgata
      781 gatactatgc aactttcttt tataattttg ataaaccttt aaatgtggca attagcaagg
      841 atgctaataa aaaccctata gtttttgctt atagtgataa tgaatttaaa gcagggggtt
      901 atataggttc taaagaacat gtgattttaa gaagtataga tccacgcctt gaagcagttg
      961 ttgaatatgg ttggtttact tttattgcta agcctatgtt tgagtttttg aatttcttgc
     1021 atcagtatat aggaaattgg ggttgggcta tcgttgtgat gactttaatt gtgcgtatta
     1081 ttttattccc gctaacttat aagtctatga tttctatgaa taaacttaaa gatcttgctc
     1141 ctaaaatgaa agatattaga gagcgttaca aaggcgatcc acaaaaaatg aatatgcaca
     1201 tgatggagct ttataaaaaa catggtgcaa atcctatgag tggttgtttg cctatacttt
     1261 tacaaattcc tattttcttt gctatttatc gcgttttgct taatgctatt gagttaaaag
     1321 cagctccttg ggcgttttgg atacatgatt tatcggtaat ggatccttat tttattttgc
     1381 ctattttaat gggtgtaacg atgtttttac aacagcttat tacacctatg actatacaag
     1441 atcctatgca agctaagatt atgaaatttt taccagtgat ttttactttt ttctttatca
     1501 ctttcccagc aggacttacg ctttattggt ttgtaaataa cctttgttct ttggttcaac
     1561 aatgggttat caataaaata tttgccaaag aacatcacaa aaaacaagcg gagcatgaaa
     1621 aatgaaaatc gaagccattg atcttcaaag tgccttaaca gaagcttcaa gaagtttaga
     1681 atgttctgtg atggacttag aatatgagat tattcagcat ccaagaaaag gtttttttgg
     1741 atttggaaga aaaaaggcaa ttatagaggc taaagcaaaa aaaaggattt tgaaaaaaaa
     1801 tcctaaaaaa gaatttgcaa gttcaaaaaa tcacaaacca gaaacacatg agccaaaaca
     1861 agaaaacaag attgaaataa aaaatgaaaa aaataaaatt caaaaagaaa aatacacagt
     1921 aaaaagtgat gaaatttttg atagttttca tcgagaaagc aaaggagtgc gtaatactca
     1981 ggatatttta gatgagattc gtattcagct tgtaaaactt ttagaaagct cccagtttaa
     2041 aatagagctt agtgaactta gaatgtataa tgaagattgt gttttgattc gattggatgg
     2101 ggaagatgct gctttgatga taggcaaaga agcgcatcgt tacaaggcta tttcttatct
     2161 tttgcataat tggatcaatt taaaatataa tcttttagta cgccttgaga tcgctcaatt
     2221 tttagaaaat caaattcaag gtatgcagct ttatttacaa agcgtgattg aaaaaattaa
     2281 aattcatgga cgcggacaaa ccaaaccttt agatggggtt ttgataaaaa ttgctttaga
     2341 gcagttaaga gctgaatttc cagataaata tgtaggaatt aagcaaaata atgatcaaag
     2401 atttgttgta ataaacgact ttttcaaaaa agatgagtga tactatagcg gctattgcca
     2461 cagctcatgg tgtgggttcg atttctattg taagattaag cggtgaaagg gctttagaat
     2521 ttgccttaaa gcttagccac aaaaccaaac tcaccccccg ccatgctact tttacaaaac
     2581 tttttaatca aaataatgaa attattgatg aagctataat gatatatttt aaagcccctt
     2641 atagttttac aggggaagat atagtagagt ttcaaactca tggaggattt agtgtgagtg
     2701 aagttttact cgaagaactt gtaagtttag gagcaagact tgctttagca ggggaattta
     2761 gcaaaagagc gtgtttaaat ggtaaaatga ctcctttaaa agctttaaat atacaagatc
     2821 tcatactttc aaaatctgca cttgcagcta aaattatagc acgcaacatg caaggaaact
     2881 taggagaact tttagaaaaa attcgcacag atttggttaa aaccttggct tttgtagaaa
     2941 ctagcattga ttatgctgat gatgatttac cttctgattt attagagcaa atttctacta
     3001 tgtgtgaaga aaattctaaa attttaaaag aaatttatac gctttctcaa agcaaaaaag
     3061 gactcataga aggttttaaa atcgctattg taggtaagcc aaatgtaggc aaatcttcgc
     3121 ttttaaatgc cttgctttct tatgaaagag ctattgtttc agatatagca ggcaccactc
     3181 gtgatactat agaagagagc tttaaattag gaacgcattt attacgcatt atagatacag
     3241 cgggtattag ggaaagtaaa gatgctatag aacaaatcgg cgtagcttta agtaaaaaaa
     3301 gtttagaaga tgcagatatt attttggcag tctttgatgc ttcaagagtg caagataaag
     3361 aagatgagaa aatttttgac ttattagcaa atactgataa aaaaatcttt tggattttaa
     3421 ataaaagtga tttagaaaat gttttcaaaa atactcaaaa taaaaatttt atcaagctta
     3481 gtgctcaaaa agatatcact ttgttaaaag aagaattgca aaattatctt aattcttttg
     3541 atagcgaagg tattatggta agttctttag atcttattaa tgcttgcaaa atttcaagtg
     3601 aagcgatttt tagagctaaa ggacttttag aggaaagttc tttagaactt tttgcttttg
     3661 aacttaattt agctattaat gaacttgcaa gatttaccaa agattttcaa agagatgaaa
     3721 ttttagacga aatgtttggt aatttttgtt taggaaaatg aaaggataaa aatggataaa
     3781 gaaaccataa aagcacataa aatcagcgat gaagaatatg cacaaatttt agaaatttta
     3841 ggacgagaac caaatctgtt agaacttggg gttatttctg cgatgtggag tgagcattgc
     3901 tcttataaat ccagtaaaaa atatcttaat ggttttccaa ctaaagcacc ttgggtgatt
     3961 caaggcccag gagaaaacgc aggggttatt gatatcgggc aaggtatggc agcagttttt
     4021 aaagtagaaa gtcacaatca tcctagcttt atcgaacctt ttgcaggtgc ggctacagga
     4081 gtagggggaa ttttgcgtga tgtttttact atgggtgcaa gagtggttgc ggggctaaat
     4141 tctttaaaat ttggcgatat tcatgatgaa aaatgtggca aacatcaaaa ataccttgtt
     4201 aaaggcgtgg taaatggaat ttctcattat ggaaattgca tgggtgtgcc aactataggt
     4261 ggagaatgtg cttttgatga gtgttttaat ggaaatatct tagttaatgc ctttgcttta
     4321 ggggtttgta aaagtgaaga tatcttttat gctaaggctg aaggtgtagg aaatcctgtg
     4381 atttatgtgg gttcaaaaac agggcgtgat ggacttggtg gagcggttat ggcaagtgat
     4441 agcttcaatg aagaaagcaa atctttgcgt cctacagtgc aaattggcga tcctttcagt
     4501 gaaaaacttc ttatggaggc ttgtttagag ctttttaaaa ccgattatat tgtgggtatt
     4561 caagatatgg gtgctgcagg gcttacttca agttcttttg aaatggcagg aagaagtggc
     4621 agtggcatga aactttactt agataaaact cctatgcgtg aaagcggtat gactccttat
     4681 gagttaatgc ttagcgaatc tcaagaaaga atgcttattt gtgcgaaaaa aggctatgaa
     4741 gataaggtta tagaaatttt caaaaaatgg gatttagatg ctgtggttat gggtgaagtt
     4801 accaatacag gaaaaatgga gcttttttgg catgatgagc ttgtagggct tattcctatc
     4861 gagcctttaa gtgaaaaggc accgatttta agccgtccta caagcgagcc aaaatattta
     4921 agtgaaatta aaaattataa atttgagtta aaatcaagca ttcaagagct ttttatacaa
     4981 atgcttcaaa atgaaaatat taataataaa gcttttattt atgatcaatt tgattcaagc
     5041 gtgcaaacca ataccataaa agctgatgga aaattaggtg ctagtgttat tcgtatcaaa
     5101 gaaaatggtg caagtgtggc tatggctata gaatgtaatt cacgcttaaa ttatgtaaat
     5161 cctaaaatag gagcagcttt agcagtagct tctgcaggaa gaaaagttgc ttgcacagga
     5221 gctaagcctt tggcaataag tgattgttta aattatggaa atccgcaaaa tcctgaagtg
     5281 atgtggcaat tcgcacaagg ttgcgaaggt attaaagaag cttgtaaaga gttaaatact
     5341 ccagtagtaa gcggcaatgt ttcactttat aatgaaactg aaggcgtaag tatttatcca
     5401 agtcctacta tagtaagcgt aggggtttta gaagatgcaa ataaaacctt aaaagctagt
     5461 tttgaaaaag aaaatttaag cgtttatctt ttgggtgaaa gtttaggaga atttggcgga
     5521 tctatggtaa tgaaaatcca agataaaaaa gtatcaggaa gtcttaaaga gcttgattat
     5581 aaagctgaac ttgcactttg ggatttgctt tataaagcca atcaaaattc tttacttgag
     5641 tgtgccaata gcgtaggaat agggggtatt gctatgactt tggcaaaaat gtttgctatt
     5701 tctagtgtgg gtgcaaattt aacaagtgat tttgatgatg aaaaaatgat ttttgatgag
     5761 agtgcaagtc gtgctataat agggcttagt aaagaaaatg aagaagcttt tttaaattta
     5821 gctaaagaat ttggagtaaa agcttataaa ttaggtgtga gtacaagcca aaaacatttt
     5881 aaacttgata gcattgagtt aagcaaggct gaacttgata agctttattt tgaaagtttt
     5941 aaagagcaaa tccaatgact ttagttttaa ttatactcgt tgttttggtg ttttactggt
     6001 attataaaac ttggggaaaa caggattttt taaactcagc tacaagagga gccaaaggct
     6061 ttgctaaggg ttttgctcgt ggggttatgg aagaaagaat ggatgagttt aaaaggcgta
     6121 tgaattacta tgttatcgca cttttggcaa aaattgcaaa aagcgatggc agggtaagtg
     6181 aaaatgaagc tgaaatgatc aaagatcttt tagatgcaaa tgccaaagat gaaaaagaaa
     6241 gagctttttt aaaagcaagt tttaacgaac ataaagaaaa tttaagcgat gctttttatg
     6301 tggcaaaaga ttttttaaaa gaagtgcctt tgcctaaaaa tgagcgtttt aatgtcttgc
     6361 gtgtgcttgt ttttatggct ttaatcgatg cagattttaa tgctaaaaag cgtgaaattt
     6421 tagagcaaat cgctaaagcc tttgatatag caaaaagcga gctagacgct tttatagcaa
     6481 gtctttcaaa tttaaaaagt actaaaaaag aattaagtct tgatgaagct tttgctattt
     6541 tagaacttcc aaataatgcg gatttaaatg cggtaaaaaa acaataccgc aatttagcaa
     6601 aaaaatacca tcctgatatt ttaaatgcaa acaatgttag cgaagaagag cttaaaatcg
     6661 gcgtagagaa atttcaaaaa atcaacgaag cttatgaaaa agttaaaaaa catttagaaa
     6721 ggtaaaaatg agagcattac ttagtgtgag tgataaagaa ggcatagtag aatttggcaa
     6781 agagcttgaa aatttaggtt ttgagattct ttcaactggg gggactttta agcttttaaa
     6841 agaaaatgga ataaaagtta tagaagtgag tgattttaca aagagtcctg agctttttga
     6901 agggcgtgtg aagactttgc accctaagat tcacggtggg attttgcata aaagaagcga
     6961 tgaaaatcat atcaaacaag caaaagaaaa tgaaatttta ggcattgatc tagtttgtgt
     7021 aaatttatat ccttttaaaa aaactaccat tatgagcgat gattttgatg aaattataga
     7081 aaatatcgac ataggcggac ctgcgatgat aagaagtgca gcaaagaact ataaagatgt
     7141 gatggtgctt tgcgatccac ttgattatga aaaagtgatt gagactttaa aaaaaggtca
     7201 aaatgatgag aattttcgtt taaatttgat gataaaagct tatgagcata cagcaaatta
     7261 cgatgcttat attgcaaatt atatgaatga acgctttaac ggaggttttg gagcgagtaa
     7321 atttatagta ggacaaaaag tatttgatac aaaatatgga gaaaatccac atcaaaaagg
     7381 ggctttatac gagtttgatg ccttttttag agcaaatttc aaagccctta aaagcgaagc
     7441 aagttttaac aatctaaccg atattaacgc agctttaaat ttagctagta gtttcgataa
     7501 agctccagct attgctatag taaaacatgg aaatccttgc ggttttgcta taaaagaaaa
     7561 tttagtacaa agctatatac atgctttaaa atgcgatagc gtcagtgctt atggaggagt
     7621 ggttgcaatc aatggaactc ttgatgaggc tttagcaaat aaaatcaatg aaatttatgt
     7681 agaagtaatc attgcagcca atgtagatga aaaagcttta gccgtgtttg aaggtaaaaa
     7741 acgcattaaa attttcactc aagaaagtcc gtttttaatt cgcagttttg ataaatatga
     7801 ttttaaacat attgatgggg gttttgtata tcaaaacagc gatgaagtag gcgaagatga
     7861 gcttaaaaat gcaaagctta tgagtcaaag agaggcaagt aaggaagaat taaaagatct
     7921 tgaaatcgct atgaaaatag cagcatttac caaatcaaac aatgttgttt atgtaaaaaa
     7981 tggcgctatg gtggctatag gtatgggtat gacaagtaga atcgatgcag caaaggcagc
     8041 aatcgctaaa gctaaagaaa tgggacttga tttgcaaggt tgcgttttag caagtgaagc
     8101 cttttttcct tttagagata gcatagatga agcaagtaaa gtaggggtta aagctatagt
     8161 agaaccaggc ggaagtataa gagatgatga agtggtaaag gcggctgatg agtatggtat
     8221 ggcgctttat tttacaggag taagacattt tttacattaa gtttaatgga atgttatgtt
     8281 ttttacacat aattcaataa aaattaaata aattatgtgt aaaatatttc cgaaaaattt
     8341 tatttttagg aaactatgat gtttaaaact ataggattta aggtttctgc tgcaattttt
     8401 gtggtgttgc ttataagttt tattgtaatg caagtgattt taaatttgga ctttaaaaat
     8461 actgccaata aaatgagcag ggcaaattta gataccgtaa gtacttctgt ttttcaaaca
     8521 atgagaatgg ctatgaattt aggagatcct gaaaaaatta aagaagccat tgaagatgca
     8581 aaaagtatag agggtattag tgatattaaa atttatcctt caaaagatac tatagatctt
     8641 tttgagatga aagcccctca aatttcaaat gataagcgta ttatagaaca attttcaaat
     8701 cctaaaattc aagctttaga agaaaatgta aatggtgttg tgcatttaag attgatacgc
     8761 cctttgattg cagatgaaag ttgtgttgct tgtcatgcaa atgctaatgt agggagtgtg
     8821 ataggggtta tggatatatc gcattcttta gaaggtgttc aaaaagatat aagtaaaacc
     8881 agtcaatctt atattataat atttactatt gctttgattt ttaccctttg tgtggttctt
     8941 ttaatgctta aagttgttgt tggaaagcct gttttagagc ttttaaatca tgctaaagaa
     9001 ttagctcaag gaagtggcaa tttaaaagct cgtatttcag ttaaaggtca agatgaaatt
     9061 gctttagctt gtggatatat caatcaattt atcgaaaaaa ctcacaaggc agttagcggt
     9121 gcaagtcata attcaaaaaa tgtagaaaaa caaagcaatc ttttaaattc aaatgctatt
     9181 tctttaagtg atatcagttc acaaagtcat aagcaaatag atcaaagttt taaacttggt
     9241 gcaaatgttg gcaatgaact tggagaactt gctagtttgt caaataaagc aaatagtgcc
     9301 aatgaaaaat cctttttatt attagaacaa atgcttaaat ctttgtttaa tgttgctaat
     9361 aaagtatcaa cagtatccca aaatgaaaat gaattggcta aaaaagttga aaacatggtc
     9421 aatcaagcag gtaatataca aaaagcaact caaatgatgg atgagatcgc agataaaacc
     9481 aatttactat ccctaaatgc tggcatagaa gcagctaggg ctggtgcatt tggacgaggt
     9541 ttttctgtaa ttgctgagga tgttaggcag ttggctcaga acagtggaga atttttggga
     9601 aatgtagctc aaattacaaa agagcttttg caaagtatta atgaggttag cgcagaatta
     9661 aagaaaaatg ctcaaagtgt acaagcttta aatgatgaca ccgctttatt ggttgatgat
     9721 gctaatgagg ttaaattatg taacgaagat gctagggctt tggtaactca atgtactgaa
     9781 aaaataaaaa tttcccaaga gaatatacaa aatttacttt ctcgtatgca agaaaatgtt
     9841 gaagtaagtg aaaagaatga agaaatttct aaaattctgc ttcaagttgc agatgagtta
     9901 aaaatagtgt gtcataatct cgaaagcgaa cttaaccaat ttcaaattta aaggaataaa
     9961 atgaaaaaaa cgcttcaaat tgctttagca gcagcttttt ttgcaggttg tgctagtact
    10021 tctgttactt catctacttc taaaggtaat aatgaacttg tgcaaaatca gcttttcaaa
    10081 atagaaaaaa ttatagttaa tggtaaaact tttgatccaa aaaacgcaga ggaaagtcca
    10141 aatatcagtt ttgaaaataa taaattttat ggttattcag gatgcaatcg tttttttggt
    10201 tcttaccaaa ctaaggcgga tactttacaa atcgaaggtg atcgcgtagc ttcaactcaa
    10261 atgctttgtc acccaatgga tgtaatggat tttgaaaatt ctttcctttc aaatttcaaa
    10321 ggaactttta aaatttcaaa tgaaaatgga aaacttgttt taagcaatga tgaaatgaaa
    10381 atctttttta aataataccc taaagcctcg aaatatcgag gcaaacttct taaatttgac
    10441 aaaagtctaa aaaatgatac aattataatt ttattatcaa aaaaggtagt taaatgataa
    10501 aatcaattcc tgaatggagt gagcaagaat acctcatgct ttctttacct catgaaaaaa
    10561 gcgattggaa tccctactta gaggaaattt tacaaagtta taaagaattt gtaaaagcag
    10621 tgagtgaatt tcaaaaagtt ttacttatag ctcctaaaca gagtgatttt gaaaatttta
    10681 aagatataaa aaatgtagag tattttaaat gtgataccaa tgatacttgg atacgtgatt
    10741 ttggagctat agatatagtg gaaaatggtc gctttaaggc tcttgatttt acttttaatg
    10801 cttggggaaa taaatttcaa agcgagcttg ataatgctgt aaattctaag ctttttaaag
    10861 aaaaatttaa agaggagctt aaaaaggttg attttatttt agaaggagga agtattgact
    10921 ttaatggaga gggtgtgatg cttacaagct ctcattgtct tttaaatgaa aatagaaatt
    10981 ctcatctaaa caaaactcaa attgatacaa aattaaaaga aatttttggc ttaaaacaaa
    11041 ttatttggct agaaaatggt tttataaaag gtgatgatac agatcatcat atcgatacct
    11101 tagcaagatt tatagataaa aataccatag cgcattgtat ttgtgaagat gaagaggatg
    11161 agcattattt gcctttacaa aaaatgaaag aagagcttaa aaaaacaggc tttgatttaa
    11221 tagaacttcc tatacctaag cctttatact atgaaggaag aagattgggg gcgacttatg
    11281 cgaattttgt ttttataaat aatgctttaa ttgtgccttt ttacaaggat aaaaatgatg
    11341 aaatcatagc taaaagactt tctaaagctt tacctaatca taaaattata ggagtagatg
    11401 caagagtgtt tttacgacaa aacggttctt tgcattgttc ttgtcaaaat cgtttcaaag
    11461 gtttaagatg agtttgcaaa aaaaagcaac tcttgtagca agtttatgtg ctattgtttt
    11521 agccttggtt aaatttatag taggcttaac aagtggttct gttgcagtgc tttcaagtgc
    11581 gattgattct ttaatggatt ttgctatttc tgcttttaat tttttagctc ttaaaaaaag
    11641 ctcacaaaag gcgaatgaaa attataattt tggtttttct aaaattgaag ctttaatggg
    11701 tttgttagaa ggtgttttta tagttggcgt ggggattttt attttttatg agagtatttt
    11761 aaagatttat tataaagaag aaattaaaga tttaaattca agcatctatg tgatgatttt
    11821 tgctttaatt atgacttttt ttcttgtact ttttttaaat tatgtagcta aaaaaaccaa
    11881 aagtttgatt atagaaagtg atgctttgca ttacaaaaca gattgcttaa ccaatgcttg
    11941 tactttaggg gctttggttt tgatttattt tacaaattta catattattg atgctatttt
    12001 tgggatagtg atcagtcttt atacggcgtt ttctgctttt aaaatcatta aaaaagcttt
    12061 ggctttttta atggatgagg ctttacctaa gaaacaagtg gataaaattt gtactttgat
    12121 ttctaataat cctgaaataa tttcctatca tgaattaaag acgcgtaaaa ctccaagttg
    12181 taattattta agcgtgcatt tggttttttg ccctataatt tcgcttttaa atgcgcataa
    12241 aatttcagat gaaatagaag aaggtgtgcg taagatgttt gaaaatgaaa aatgggatat
    12301 acaaattcat ttagatcctt atgatgatgc agaacaagaa aggcaaagac aatgaaaatc
    12361 gctttaatac aacaaaaatt tcactcaaac aaagaacaaa ctataaaaaa aacttgcgaa
    12421 tttatagaag aagcctctaa acaaggagct gagcttattt gtttgggaga acttcatcaa
    12481 agtgagtatt tttgtcaaag tgaaaatgtg gatttttttg actatgctaa tgattatgaa
    12541 aaagatgtga aattttgggc aaatatagct agaaaaaatc aaatagtgct tattacttca
    12601 ttatttgaaa aacgaagtgc tggactttat cataatactg cagtggtttt tgaaaaagat
    12661 ggttctatag caggcaaata tcgcaaaatg cacatacctg atgatccttg tttttatgaa
    12721 aaattttatt ttactcctgg agatttgggt tttgaaccta taaatacaag tttaggcaag
    12781 cttggagtgc ttatttgttg ggatcagtgg tatcctgaag cagcaagaat tatggcttta
    12841 aaaggagctg agattcttat ttatcccacg gcaattggtt ggtttgataa ggataaagat
    12901 gaagaaaaac aaagacagct caatgcttgg cttggcgtac aaaaaggaca tgctatagct
    12961 aatggtttat atgtagtagc tatcaataga gtaggttttg aaaaagatgt aagcggggta
    13021 gaagagggca ttagattttg gggaaattct tttgtttttg gccctcaagg tgaagaactt
    13081 tgtcttttag attctcaaaa cgaatgtgta aaaatcatag aaatagataa aaaaagaagt
    13141 gaaaatgtgc gtcgttggtg gccttttttg cgagatagac gcatagaata ttttgcagat
    13201 ttaactaaaa gatttattga ttaaatcaat aaatcttatt tgttttgtat attttcaaga
    13261 tagcttttta tttgctcttt ttcttgttcg tttaaattta taaaacttat ttctttaagt
    13321 cttgataaaa gcaaattatc ttctaaaatt tcattttttc ctatttctaa agaagtgatg
    13381 acgctagaac ttatgagaag tctttgggtt gtatcttttc ttaagcccca tatattatgt
    13441 atagcaatat tattatctgc aatt
//
LOCUS       DAEBKH010000032        13396 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.032, whole genome shotgun sequence.
ACCESSION   DAEBKH010000032 DAEBKH010000000
VERSION     DAEBKH010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13396
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.032"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..1048
                     /locus_tag="KIL20_000650"
     CDS             <1..1048
                     /locus_tag="KIL20_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HBD2720696.1"
                     /translation="PFCESKCNYCAFTSLKKNDYEKAYFKALKEDIVFQLKQFNIQSN
                     QIKTLFIGGGTPSCVDAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWLKNMKNLG
                     VNRISFGAQSFHPKKLHFLGRIHNQEMIIKALENANKVGFKNINLDLIYDTKLDNKKM
                     LEFELLHLKQIKALITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQLLELDFF
                     QYEISNFSKTKSQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLKNYIENPTF
                     RSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYKNKRYFNP
                     NFLISDELALYLSS"
     gene            1107..1514
                     /gene="tatB"
                     /locus_tag="KIL20_000651"
     CDS             1107..1514
                     /gene="tatB"
                     /locus_tag="KIL20_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HBD2720697.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDNTKNNLSGQNLNTEEKPNLSKLETQDKTEK"
     gene            1515..2252
                     /gene="tatC"
                     /locus_tag="KIL20_000652"
     CDS             1515..2252
                     /gene="tatC"
                     /locus_tag="KIL20_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HBD2720698.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAILVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDKESDE"
     gene            2245..3273
                     /gene="queA"
                     /locus_tag="KIL20_000653"
     CDS             2245..3273
                     /gene="queA"
                     /locus_tag="KIL20_000653"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HBD2720699.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLQDFLPNCAIFFNDTKVIKARIYGNKVSGGKIELFLHQPFLNSHNPLFLAQIK
                     GRVKKDEILYFKKDLKIRVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYARTKTKSG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(3262..4227)
                     /gene="lpxD"
                     /locus_tag="KIL20_000654"
     CDS             complement(3262..4227)
                     /gene="lpxD"
                     /locus_tag="KIL20_000654"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HBD2720700.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAIKFKEKSQD"
     gene            complement(4224..4688)
                     /gene="ilvN"
                     /locus_tag="KIL20_000655"
     CDS             complement(4224..4688)
                     /gene="ilvN"
                     /locus_tag="KIL20_000655"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HBD2720701.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            complement(4685..6385)
                     /locus_tag="KIL20_000656"
     CDS             complement(4685..6385)
                     /locus_tag="KIL20_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HBD2720702.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHATDAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYPKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELVKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKTINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISNKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            complement(6403..6846)
                     /locus_tag="KIL20_000657"
     CDS             complement(6403..6846)
                     /locus_tag="KIL20_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HBD2720703.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            complement(6858..7877)
                     /locus_tag="KIL20_000658"
     CDS             complement(6858..7877)
                     /locus_tag="KIL20_000658"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HBD2720704.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEARGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            7970..8044
                     /locus_tag="KIL20_000659"
     tRNA            7970..8044
                     /locus_tag="KIL20_000659"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8002..8004,aa:Gln,seq:ttg)
     gene            8079..8154
                     /locus_tag="KIL20_000660"
     tRNA            8079..8154
                     /locus_tag="KIL20_000660"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8112..8114,aa:Met,seq:cat)
     gene            complement(8176..9048)
                     /locus_tag="KIL20_000661"
     CDS             complement(8176..9048)
                     /locus_tag="KIL20_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HBD2720705.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLTFMPIKKENGRYVLESFALGKLSFKDIQNFATLSGIAKLYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLIFFYKEKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKFRTKNENFIPNEKLEEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNYQIIDEDETSYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKTR
                     LENILKSYLNNLSK"
     gene            complement(9045..10112)
                     /locus_tag="KIL20_000662"
     CDS             complement(9045..10112)
                     /locus_tag="KIL20_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD2720706.1"
                     /translation="MNHLLILYNPYYQEDVIKQHLSILQEKSQVAFGKIKSKLNDQEK
                     QNFLEEIYQSTNEENFLQLFLSDYANLFVAKVVKISKNVDESLIPSYYKEKNLEVEDF
                     FIISDLRELVREDFSLLRDKFLANFITPNDHTYAIYGNNYTYPLPVRLKEECSYFLGD
                     EKHYLSVYKSKEYLVMQENFIRFVFGKRIFYLLHPDSISNIIHAELELLQSENDLLND
                     FTSIVVKYSKTLEYEIYAFAKKVLLKACMKDPSLYDLAYNVQGKSFILKDFFTQKPNL
                     GSIKFLLRHENIQCHLGKSLTQFINYPFSKSLTLIQEIRNEAVHAKAPSLNEVKKLRN
                     EILGIEGVSLLKSILTHKEIS"
     gene            complement(10121..10426)
                     /locus_tag="KIL20_000663"
     CDS             complement(10121..10426)
                     /locus_tag="KIL20_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720707.1"
                     /translation="MFSKIFSSLSLANAFKGFLFKRISSPMQSARIISMVLDIKNAFN
                     DSKDQASSICKTLDLIVNFKKEHPQDFNELFEILKDLIQEYEQNPNEIKQNLKEILK"
     gene            complement(10433..10897)
                     /locus_tag="KIL20_000664"
     CDS             complement(10433..10897)
                     /locus_tag="KIL20_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004316478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720708.1"
                     /translation="MNFLSSLKDKAVNASEAIKDKTIKTAEVVKDIGMEVKCGIGWHA
                     GEYQNEKDKPKCFFSKICPDCGKYLTKNQHDFEAPEILNPDNCYGYRRCTLCSIQVFD
                     NFHNYYEIKKDSKCRMHEKCNLCGHERLGQTRHNWKYDESGQKICLDCKETV"
     gene            complement(10901..11683)
                     /locus_tag="KIL20_000665"
     CDS             complement(10901..11683)
                     /locus_tag="KIL20_000665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720709.1"
                     /translation="MLELITQKDQDFLQNIENLDEEYIQKFINKKISEIAIAIETAAE
                     NADKAKDRTQKAKNLNTDSDWQTYIPIFGRWLGETSEEKKEIKSNMILEVAELQNESM
                     NQMTTILKEVVIFFTSSFCIATRMNQALSLIIAQGFVKSDGKVIRLSKAAKEQFQQIQ
                     KFTLSFIEDHEKHKDTINNIQVELDKKNQIDDEQYKLIEKHYQEFIQYKNYNDKIVQE
                     QECKINELKDILNKRKNVFTNSISILALIVSVASIVLYFIGR"
     gene            complement(11683..12549)
                     /locus_tag="KIL20_000666"
     CDS             complement(11683..12549)
                     /locus_tag="KIL20_000666"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720710.1"
                     /translation="MKIFVYSAFGVVLKDFIEAVVIELKTTFREFGKENIKEIFKRFA
                     RRMEKVWEKIKAKWKDIFKGSLEAGIQAFFSNLLVFIINTIFTTLKKIVQIIRAGFTS
                     LYQAVKIIINPPKNIPKDEIYFEASKIFVSGMISAISMLGSEMIHKFLLSIPGFNVFL
                     SLPIPFTDETIGDALSLCISAAGGAVLSTIAIFYMDKWRSNSKIGNLQIQIVTQKNLI
                     VQYKIAKTWFALNDAYHIVKNETLATIQQIKKDNQIREQSSQEVETAIEEFENCNITK
                     KLYKKLNQTKEN"
     gene            complement(12621..13365)
                     /locus_tag="KIL20_000667"
                     /pseudo
     CDS             complement(12621..13365)
                     /locus_tag="KIL20_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855141.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         4310 a         2315 c         1797 g         4974 t
ORIGIN      
        1 tccattttgt gaaagcaaat gtaattattg cgcttttaca agtttgaaaa aaaatgatta
       61 tgaaaaagcc tattttaagg ctttaaaaga agatattgtt tttcaattaa aacaatttaa
      121 cattcaatca aatcaaatta aaaccttatt tataggcgga ggaacaccaa gttgtgtcga
      181 tgcgtataat tatgaagata tttttaaaat tttatatccc ttactagata aaaatgtaga
      241 aatttcatgc gaagccaatc ccaactcagc aacattaaat tggcttaaaa atatgaaaaa
      301 tctaggagtt aatcgcattt cttttggagc tcaaagtttt catcctaaaa aacttcactt
      361 tcttggaaga attcacaatc aagaaatgat tatcaaagca ttagaaaatg caaataaagt
      421 aggttttaaa aatatcaatt tagatcttat ttatgataca aaattagaca ataaaaaaat
      481 gcttgaattt gaactcttac acttaaaaca aatcaaggct ttaatcacac accttagtgc
      541 ttataattta accatagaat caaacacagc ctttgccaaa aaagaacatt tcaaaaaaaa
      601 tgctcctaat ttaatgaaat tttttatcaa acaacttcta gagcttgact tttttcaata
      661 tgaaatcagt aatttttcaa aaactaaatc tcaaatttgc aagcataatc ttgcttattg
      721 gcaaggaaaa aactacctag cttgtggatt aagtgcagta ggattttatg aaaataagcg
      781 tttttataca gcaaaaaatt taaaaaatta catagaaaat cctactttta gatctataga
      841 gcaactaagc tctaaagact tgaatttaga acacctattt ttaggactta gaagtatagt
      901 agggattgat gaaacaaaac tcaatcaatg gcaaaaagac aaaataaata tattattaaa
      961 agaaaaaaaa cttttttaca aaaataaaag atattttaat cctaattttc tcattagcga
     1021 tgaacttgct ttatatctct catcttaaat ttaagttttt taagtaaaat atttatttaa
     1081 aatatcaaat taaagagtaa cgattaatga gttttggtga aattatagtt attttagttg
     1141 tagcgatttt agtcttaggg cctgataaac ttccagaagc tatagtacaa atagcaaaaa
     1201 ttctaaaggc tgtaaaacgc aacatagatg atgcaaaatc aagcatagaa aaagaaatac
     1261 gcatcaatga cttaaaagaa gaagctaaga aatacaaaga tgaattttca agcactaatg
     1321 aaaatatacg caaaaaactc agttttgaag aatttgatga ccttaaaaga gatattttag
     1381 ataaaacaaa ggtagattta acctttgata gcagagatga taacacaaaa aataacctta
     1441 gcggacaaaa tttaaataca gaagaaaaac caaatcttag caaattagaa acacaagata
     1501 aaacggaaaa ataaatgttt gaagaattaa gacctcattt aatagaactt agaaaacgcc
     1561 tttttataag cgttgcttgc attgtagtta tgtttattgt atgttttgct ctacgaagct
     1621 atatcttaga tattctaaaa gctccactta tagctgtttt acccgaagta gccaaacatg
     1681 tgaatgtaat tgaagtacaa gaagccttat ttaccgcaat gaaggttagt ttttttgcag
     1741 cctttatctt ttctctacct gtaatttttt ggcaattttg gaaatttgta gctccaggac
     1801 tttatgataa tgaaaaacgc cttgtggtgc cttttgttag ctttgcaagc attatgtttg
     1861 ccttgggggc ttgtttttgc tattttgttg tagtgccttt ggcttttaaa tttttgatta
     1921 attttggttt aaatgaagat tttaatcctg tgattaccat aggaacttat gtagattttt
     1981 ttaccaaagt tgttgtggct tttggcttag cttttgaaat gcctgtaatt gcctttttct
     2041 ttgctaaaat tggacttata gatgatagtt ttttaaaacg ccattttcgc atagctattt
     2101 tagttatttt tgttttttca gcctttatga ctccacctga tgttttatct caatttttaa
     2161 tggcaggacc actttgcgga ctttatggac tttctatttt aattgttcaa aaggtaaatc
     2221 ctgctccaaa agataaagaa agtgatgaat aaagacttac ttctttcaag ctatgattac
     2281 actctagcta atgaactcat agccaactat cctacaaatc caaaagaaga tgctaggctt
     2341 ttggtttttg atcgcaaaaa caaagaaatt tttcatacta cttttaaaaa tttacaagac
     2401 tttttaccca actgcgcgat ttttttcaat gataccaaag ttattaaagc aagaatttat
     2461 ggcaataaag taagcggagg aaaaatagag cttttcttgc atcagccttt tttaaattct
     2521 cacaatccac tttttctagc tcaaattaaa gggcgtgtta aaaaagatga aatcttatat
     2581 tttaaaaagg atttaaaaat acgcgttgta gaacttttaa atgatggtct tcgaaaagtt
     2641 caattttttc aaaatgataa aaccttagac acctcaaatc tttacaacct gcttgacaag
     2701 ataggacata tacccttgcc tccttatatt aaaagggagg atgaaaaaag cgatttaaaa
     2761 gattatcaaa gtatctttgc aaaaaattta ggcgcagtgg ctgctccgac tgcaagttta
     2821 cattttagtg agactatgct tgaaaattta agaaaaaaac acgaaattta tcatttaacc
     2881 ttgcatgtag gagctggaac ctttaaaagc gtggaatgcg aaaatataca agagcataaa
     2941 atgcatagtg aattttttaa tattccgcag caagcatgtg aaattataga ttctaaacaa
     3001 gctattttag gcgtaggaac aacggtaaca agaaccatag aatattatgc aagaactaaa
     3061 acaaaaagcg gtttttgcga tcttttttta cacccgcaaa atccacctat aagacaaaat
     3121 catcttttaa ccaattttca tttaccaaaa tctactctta tcatgctagt ttcagctttt
     3181 atcggtagag aacagtgttt aaaactttat gaactcgcca taaaagaaaa atatcgcttt
     3241 tactcttatg gcgatgcgat gttaatcttg tgatttttct ttaaatttta ttgctatttt
     3301 agcttgaagt tttagccaat ctttttgaag catgatagga aaacctccat aaacacgccc
     3361 gccttctaaa tttttactca caccacctct tgcagctata gtgctaaaat cgcctatttt
     3421 taaatgtcca ctcgttgcac tttgaccacc cataataaca ttgcgtccta actcacttga
     3481 acctgaaatt ccagtttgcg ccacaatgat gcaattttga cctatattgc aattatgtcc
     3541 gatttgaact agattgtcta ccttagtacc tgctttgata atagtactat caaaaactgc
     3601 tctatctata gttgtacaag cccccacttc tacaaaatct tctaaaacca cattaccatt
     3661 atgataaatt ttataatgtt cgccgttttt attgtgcgca taaccaaaac cgtcacttcc
     3721 tattacacaa ttggcaagca aatgacattt tttaccgatt ttagtgtcat tataaatcac
     3781 tacattagga tggataatac tctcatcacc aatgctgaca ttatcgccta tataagctcc
     3841 tgccataata attacatttt caccgatatt tacattatcg cctatataaa cattaggcat
     3901 gattcttgcg ctttttgcga tattttgtac tttttcttta gctgtgctta tcaaaggttt
     3961 agcaaaaagc ttgcttaaaa aagcaaaact caaatgtgga ctttgagtaa tcaaagcttt
     4021 agtatcttta ggtactaaat tttcatattc tttagatact aaaatagcag cagctcctgt
     4081 gtgaggtata tctttggtat ttttctcacc atcacaataa gtaagctctg taaaatttgc
     4141 tttcaataaa gaatttaaag cactgatttc tatatcctcg cctttatatt ccaagcttaa
     4201 aaattctgct atttcactta atttcattta atctccatca aaacagatcc actgcgaact
     4261 atatcactag gattgtattt tttaattgtt tttaaaaaat tatcaattcg atttgcatca
     4321 tcagcaacca ttaaaaacaa aaaattctca ttgctatttg caatagtacc attataagct
     4381 ttcaaaacgg catcaagtcc acctaaattt tcatttaaag gaattttcac caaagccatt
     4441 tctttgtcaa taaattcttc gctttctatc actttataag taggaataag cttatgaagt
     4501 tgtttgacta tctgctcaaa agttctttca tttcctgaag tgactatatt aatacgagaa
     4561 aattctttat tttccaaagg tgctactgta agcgagtcaa tattataacc tcttcctgaa
     4621 aaaagtccta ctatacgaga taaaacccca tgctcattta aaacaattac cgataaaacc
     4681 cttctcattg tctatccttt gcctttggta aaatcatatt ataaatcgca cctcctgcag
     4741 gcaccatagg taaaacatct tcaaagcgat caatttttac atttaaaaga gaggttttat
     4801 cactttttaa agcttggcta aaagcttgaa tgaattcttc tttgtttgaa atttcataac
     4861 cttcacaacc aaaaccttga gctattttga taaaatcagg ctgagtgctt aaatcagttt
     4921 gtgaaaaatg ctctttataa aacatacttt gccattgtct taccatacct aaaaaggcat
     4981 tatttaaaat aatatttata gtttttatac catactcata ggcagtcata agctcttgga
     5041 tattcatcaa aaccgatcca tcacctacga aattaatcac cacttcttca cccacagcaa
     5101 gttttgcacc caaagccgca ggtaaagaat atcccatagt tccttgccct ccacttgttg
     5161 caagttgtct tggataatta aaaggataaa actgcgccac ccacatttga tgctgaccca
     5221 catcagtaat aatccttgca tctggagcca ttttcgcaca ttcttcaatc acccattgcg
     5281 gttttaaaat ctcattgcta tcttcataag aaagcggata aagttcatta taacgcttta
     5341 aagtttcgtg ccattcttta aaagttgtgt tgaaattttc ctttttaagc tcttctaaaa
     5401 gctctttaag aacttcttta atatctccta ctataggata atgcgcattg ataatctttg
     5461 aaatagaact aggatcaata tcaacatgaa ctatagtcgc atgtttagca aattcacttg
     5521 tttttcctgt aatcctatca tcaaatctcg ctcctacact cacaagcaaa tcacactcac
     5581 ttaaagccat attagcagca tagcttccat gcatgcctgc cattttaaga ttaaaaacat
     5641 catcacttct taaagttcca agcgccatca aggtttcaac tgctggaatt tttgtaaatt
     5701 ttacaagctc tctgatttgc tcacttgcat tagaactgat acatcctcca cccaagtaaa
     5761 acaaaggtct ttttgcttct tttaaaagct ctgcaaattt tttaatttgc tttgagttac
     5821 ccttataaac gggcttataa gttttcatag aaatttcttt aggatattcc caaagtccca
     5881 aagttgcact tacatctttt ggcacatcta tatgcacagg cccaggtcta ccacttcttg
     5941 ctatataaaa agcctctttt aaaatgcgtg gaaactcttc tatgcaagta actaaataat
     6001 tatgcttcac gcaaggtctt gaaatgccta ctgcatcaat ttcttgaaaa gcatctgtac
     6061 caataagaga atttgccacc tgccctgaaa tcaacaccaa agggatagaa tcactataag
     6121 ccgtagctag acctgtaata gtatttgtaa aacctggtcc gcttgtaact atagctacgc
     6181 ccacttctcc actcattctt gcataagcat cagtagcatg caaagctgct tgttcatgac
     6241 gcactaaaat atgtttaaag tacttttgat tgtaaatttc atcataaata ttaagcgcag
     6301 cgcctccagg ataaccaaaa acaattttaa cattttcttc ttttaaagcc tcgcaaatca
     6361 ttgctgaacc gcttaactct ttcataataa cactccaaaa aattattgta aaagctcttt
     6421 aagtgctaaa ttaagtcttt tgccatcaac actcgcacct aattttattt tagcttcttt
     6481 cattaccaaa ccttgttctt ttagtgaact tacacccaat tcttctataa gttgttttaa
     6541 ggctaaagtt aactcctcat cacttagttg tttaggcaaa taaatttcaa aaagacttat
     6601 ttcattttgt tctttttgtg ctaaatcttc acgatttgcc ttaagataaa gttcgattgc
     6661 gtctttgcgt tttttgattt cacttgcaat gattttataa attctttcat tatctaattc
     6721 tattctttca tccacttcta tttgcttaaa agctgcattt agagttctta aactatctct
     6781 tttaaaatca tctttttgtt tcattgcctc tttgatatcg tttaaaattt gttcttttaa
     6841 agtcattttt ttccttttta gttaaaatta caagctttaa ggtttaaacc aaaaccttct
     6901 aagcctatat agtctttatc acaactttga gataaaagtt taatttcttc tataccaaaa
     6961 tatcttaaaa tctgtgctcc tataccatag tttttgtatt gagtggtact ggatttttct
     7021 ccttgcatga aaactataac gccaccattt tcactaagaa atttgatttg ctctaaaagt
     7081 tttgaaaatt tatctgaagt taaaagctca aaatcactac cactgatatg aaatttaaca
     7141 ttttcacatt ttttaatatc tttaaagcaa aaagctatgt gttgggtttg attatgatcg
     7201 ctaaagataa atttttctgc tttaaagcct gctaaaacac tttgactttt ttcttcaagc
     7261 ttaataaggc tttcatgttt taggcgatat tctataagat cgcttacggc tatcatgttt
     7321 agatcatgtt tttggcaaaa aatttctaga tcttctcttc ttgccatatc tccattatct
     7381 tttacgattt cacaaatcac acatgcacct tttaatcctg ctaatttaca aagatcaacc
     7441 gtgccttctg tatgacctgt gcgttctaaa accccacctt tttttgcgat taaaggattg
     7501 atatgccctg gtcttacaaa atcactcgct ttagcattat cgtcagcaaa aatttgtata
     7561 gtcatatttc tttcataagc actaactcct gttgtagcat cttttgcatc tacggttatg
     7621 gtaaaagcag tttcgtggtt tgaagtattt ttaggcacca ttaaaggaag ttcaaatttt
     7681 tttgccaaag tttcatctaa ggctacacaa accacaccac gagcttcttt tatcatgaaa
     7741 tttacttttt cttgagtgct aaattgcgca ggaaagatta aatcgccttc attttctcta
     7801 tcttctgcat ctaccataac aagcattttt cctgcttgta aatccttaat cgcttgttct
     7861 acgctaacaa atttcatttt tatttcctta aaatttttaa aattataact taaattgctt
     7921 gacaaataaa ttaaaattca ttataatcac acttttaaaa aatatttatt ggggtatcgc
     7981 caagcggtaa ggcaacaggt tttggtcctg tcattcaggg gttcgaatcc ctttacccca
     8041 tccacttctt attttatatt tcaaagtatc ttatatgccg cgaagtagag cagtggttag
     8101 ctcgtcgggc tcataacccg aaggtcggga gttcaaatct ccccttcgca accagttatg
     8161 gatttaaaat aaattttatt tagatagatt gtttaaataa ctttttaaaa tattttccag
     8221 ccgtgttttc agttctatag gggctagaat ttttatataa ggaatccact gcttaaccaa
     8281 atgcaaaatt tcatcttcat aggaaacttg agtgcttaaa gtatagcttg tttcatcttc
     8341 atcaatgatt tgataattac ttagtatttc ttttctaaaa aaatattcct tagcattttt
     8401 atcaagtttt aaaatcactt ctttactttc tccaagccag atattaggat cattttggat
     8461 ttgttcctca agtttttcat tgggaataaa attttcattt ttagtgcgaa attttgaaat
     8521 tttatccaaa ttaaaatgtt ttaatttatc attttcatcc cctaaaagat accaaattcc
     8581 tttgtaattt acgagtttgt aaggtttgat ttggcgttct ttttccttgt agaaaaaaat
     8641 caatacattg tgtttgagta tagctacact aagatcttta aaaagctcat aatccacctt
     8701 ttgaaaacct tcgtttttta ccatcaaaac tttatttacc ctatggctta aaagatcaac
     8761 tataaagcct tgatcgagtt ttggataaag cttagcaata ccacttaagg tggcgaaatt
     8821 ttgtatatct ttaaagctta attttcccaa agcaaagctt tctaaaacat atcttccatt
     8881 ttctttttta ataggcataa aagtaagtct ttcgttaaga tctctttgta tggttcttgt
     8941 atcgacatta aactcttgtg caagctcttg ggcgcttaga ctttccccat tgttaaattt
     9001 tgataaaatc tgcaccaagc gtatgcttaa tttgtcgtat tctttcatga aatttccttg
     9061 tgggttaaaa tgctttttaa caaacttacg ccttctatac ctaaaatttc atttctaagt
     9121 tttttgactt catttaaact tggagctttt gcatgaacgg cttcattgcg gatttcttga
     9181 atgagagtaa gactttttga aaaaggataa ttgataaatt gagttaaact ttttcctaaa
     9241 tgacattgga tattttcatg tctgagtaga aatttaatac ttccaagatt gggtttttgg
     9301 gtaaaaaaat ctttaagtat aaaagattta ccttggacat tataagctaa atcataaagg
     9361 ctaggatctt tcatacaagc ttttaaaaga acttttttgg caaaagcgta aatttcatat
     9421 tctaaggttt tggagtattt gactacaatg cttgtaaaat catttaaaag atcgttttcg
     9481 ctttgtaaaa gctctaattc tgcatgaatg atattgctta tgctatcagg gtgcaagaga
     9541 taaaaaatcc ttttgccaaa aacaaagcgt atgaaatttt cttgcatgac taggtattct
     9601 ttgcttttat acacacttag ataatgcttt tcatctccta aaaaataaga acactcttct
     9661 tttaatctca caggtaaagg ataggtgtaa ttattgccat agatagcata ggtgtgatcg
     9721 tttggggtga tgaaattggc taaaaattta tctcttaaaa gactaaaatc ttccctgacc
     9781 aattctctta aatcactgat aataaaaaag tcttccactt ctaaattttt ttctttataa
     9841 taactaggaa tcaaactttc atcaacattt ttagaaattt ttaccacctt agcgacaaat
     9901 aaattagcat aatcgcttaa aaaaagttgt aagaaatttt cttcatttgt actttggtaa
     9961 atttcttcta agaaattttg cttttcttga tcgttgagtt ttgatttgat tttgccaaag
    10021 gcaacttggg atttttcttg taaaatgctt aaatgttgct tgatgacatc ttcttgataa
    10081 tagggattat aaaggattaa aaggtggttc atgctttgcc ttattttagg atttctttga
    10141 gattttgctt gatttcatta ggattttgct cgtattcttg tatgagatct tttaaaattt
    10201 caaacaactc gttaaaatcc tgcggatgtt cttttttaaa atttactatc aaatccaaag
    10261 ttttgcaaat actacttgct tgatctttgc tgtcattaaa agcatttttt atatccaaaa
    10321 ccatactaat aatacgagca ctttgcatag ggcttgaaat gcgtttaaat aaaaatcctt
    10381 taaacgcatt tgcaaggcta agagatgaga aaattttaga aaacatctgt ctttatactg
    10441 tttctttgca atctagacaa attttttgcc cgctttcgtc gtatttccaa ttgtgtcttg
    10501 tttgtcctaa tctttcatgt ccgcataaat tacatttttc gtgcattctg cattttgaat
    10561 cttttttgat ttcataataa ttatgaaaat tatcaaacac ttgaatagaa caaagagtac
    10621 atcgtctata tccataacaa ttatcaggat ttaatatttc aggagcttca aaatcatgtt
    10681 gattttttgt aagatatttt ccacaatcag ggcaaatttt ggaaaaaaaa cattttggtt
    10741 tatctttttc attttgatat tcacccgcgt gccaaccaat cccacatttt acttccattc
    10801 caatatcttt aacaacttca gcagtcttaa tagttttgtc tttaattgct tctgaagcat
    10861 ttaccgcctt atcttttaaa gaacttaaaa aattcataaa ttaacgccct ataaaatata
    10921 atacaatcga cgcaacagaa actatcaaag ctaaaattga aatgctattt gtaaaaacat
    10981 tttttctttt atttaaaata tctttcagtt cattgatttt acattcttgc tcttgaacaa
    11041 ttttgtcatt ataattttta tattgtataa attcttgata atgtttttct atgagtttat
    11101 attgttcatc atcaatttga ttttttttat ctaattctac ttggatatta tttatcgtat
    11161 ctttgtgttt ttcatgatct tctataaaac tcagtgtgaa cttttgtatt tgttgaaatt
    11221 gttctttagc ggctttagat aaacgaatta ccttgccatc gctctttaca aaaccttgcg
    11281 caataataag agataaagct tgattcatac gcgtagcaat acaaaaactg gaagtaaaaa
    11341 atattacaac ttcttttaga attgttgtca tttgattcat tgattcattc tgtaactctg
    11401 ctacttcaag gatcatattg gatttaattt cttttttttc ttctgatgtt tctccaagcc
    11461 aacgtccaaa aattggtata taagtttgcc aatcactatc tgtattaaga tttttggctt
    11521 tttgtgttct atcttttgct ttatcagcat tctctgctgc tgtttcaata gctatagcta
    11581 tttcactgat ttttttatta ataaattttt gaatatattc ttcatcaagg ttttcaatat
    11641 tttgcaaaaa atcttgatct ttttgtgtga taagttctag catcagttct ccttagtttg
    11701 attaagtttt ttgtataatt ttttagtgat attacaattt tcaaattctt caattgctgt
    11761 ttctacttct tgagaacttt gctctcttat ttggttatct tttttgattt gttgtatagt
    11821 tgctaaagtt tcgtttttta caatatgata agcatcattc aatgcaaacc aagttttggc
    11881 aattttgtat tgtactatca aatttttttg agttacaatt tgtatttgta aattgccaat
    11941 tttggaattg cttctccact tatccatata aaaaatagct atagtgctca atacagcacc
    12001 accagccgct gaaatacata aagaaagggc atcccctatt gtttcatcgg taaaagggat
    12061 aggtagtgac aaaaatacat taaatccagg tattgacagc agaaacttgt ggatcatttc
    12121 acttcctaac attgaaattg cagaaatcat cccgctaaca aaaattttcg atgcttcaaa
    12181 gtaaatttca tcttttggta tatttttagg tggattaata atgattttta cagcttgata
    12241 tagagaagta aagcctgcac gtatgatttg cactattttt tttaaagttg taaaaatagt
    12301 gttaataata aaaaccaaca aattagaaaa aaatgcttga attcctgctt ctaaagaacc
    12361 tttgaatata tccttccatt ttgcctttat cttttcccaa actttttcca ttctgcgtgc
    12421 aaatcgttta aaaatttctt taatattttc ttttccaaac tctctaaagg tggtttttaa
    12481 ttcaataaca acagcttcaa taaaatcttt taagacaact ccaaaggcag aataaacaaa
    12541 gattttcatt gaatctttag cacctgtact taaaacttca ttagaatatt tgacaatttt
    12601 ttcttttata actttctttt ttaggtttga tttggctgta ttgtaaattt tttcagcttt
    12661 tttttcatcg attccatatt tttcaaaatt ggtttttcct gtttttggat caatttcttt
    12721 accccactcc ataagatctc tatcaccttt agaagcatta gcacttgcat caagccactt
    12781 aagattgtca gggtgatttg ctatttctgc cctaattgca tcatctaaaa ataaatgcat
    12841 attaggatct ctatcaattt cctttaaaga aataacatga tctagttgcg ctttattctt
    12901 tccagcaccc ctttccattt cttcacctgt gtattcacta cgtacaattt ttggagaatt
    12961 atctcttata ttatctttta ttttatcata gtttgaatct cgtttatagc cttgttgata
    13021 ttttgtaagc ttttgtaaat cttcttctgt tgctacaata cctttttcaa agttatgtag
    13081 tgttgttaca ttcccaccat cttttgcatt taatattgtt gaagcgagtc caaaatgccc
    13141 tgtcacagca tccatagcat ttttagtgca ttgttcaaaa agtgtttggg tttgctgttc
    13201 gggtaatttt tccattaaat cttcaagttc tttaagtgaa ttttccaaac ctttatcaat
    13261 ttctattctt agacattctt ttttagataa attttccaac tctttttcta aatccgcata
    13321 attggctttt aaatccaatt cttctaaatg tatataatta ttcatatttt aataattcct
    13381 tgtttttaat ttttat
//
LOCUS       DAEBKH010000033        13375 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.033, whole genome shotgun sequence.
ACCESSION   DAEBKH010000033 DAEBKH010000000
VERSION     DAEBKH010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13375
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.033"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..190
                     /locus_tag="KIL20_000668"
     CDS             <1..190
                     /locus_tag="KIL20_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hemerythrin family non-heme iron protein"
                     /protein_id="HBD2720711.1"
                     /translation="FEEVKEEKDDENAVYLYTCECVGQMHDVPFGIHQKIQLKGVKFK
                     CKKCKEAIQFYKKYSENF"
     gene            251..436
                     /locus_tag="KIL20_000669"
     CDS             251..436
                     /locus_tag="KIL20_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720712.1"
                     /translation="MDKKIKYFILDKFDYSYPILTKDTKCSFCENFFPIEYSSNLKTI
                     EKECPFCNNKMDIKLKD"
     gene            complement(433..1464)
                     /locus_tag="KIL20_000670"
     CDS             complement(433..1464)
                     /locus_tag="KIL20_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HBD2720713.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(1543..2439)
                     /gene="sppA"
                     /locus_tag="KIL20_000671"
     CDS             complement(1543..2439)
                     /gene="sppA"
                     /locus_tag="KIL20_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HBD2720714.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILMPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVVDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            complement(2427..3656)
                     /locus_tag="KIL20_000672"
     CDS             complement(2427..3656)
                     /locus_tag="KIL20_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HBD2720715.1"
                     /translation="MFIAAARYLFLCDEDFTILENQAFVFEDKILELGELDNLRKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSMLNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASQKGIRVVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAYFALDLAKKQNLLVSTHFLESK
                     AENIWLRESKGGVKKWLENFTLHPKPLYAPKDFAKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMATLYPARALNLNLGELKKGKIADFSVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            3747..4226
                     /gene="aroQ"
                     /locus_tag="KIL20_000673"
     CDS             3747..4226
                     /gene="aroQ"
                     /locus_tag="KIL20_000673"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HBD2720716.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            4229..4702
                     /gene="folK"
                     /locus_tag="KIL20_000674"
     CDS             4229..4702
                     /gene="folK"
                     /locus_tag="KIL20_000674"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HBD2720717.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            4712..6166
                     /gene="flhF"
                     /locus_tag="KIL20_000675"
     CDS             4712..6166
                     /gene="flhF"
                     /locus_tag="KIL20_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HBD2720718.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLTKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLSF
                     FSTGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            6159..7025
                     /gene="flhG"
                     /locus_tag="KIL20_000676"
     CDS             6159..7025
                     /gene="flhG"
                     /locus_tag="KIL20_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HBD2720719.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDELKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            7044..7400
                     /locus_tag="KIL20_000677"
     CDS             7044..7400
                     /locus_tag="KIL20_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720720.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNESKERRRNAKRAA"
     gene            7381..8073
                     /locus_tag="KIL20_000678"
     CDS             7381..8073
                     /locus_tag="KIL20_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HBD2720721.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNNNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLENECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            8073..9152
                     /gene="fliM"
                     /locus_tag="KIL20_000679"
     CDS             8073..9152
                     /gene="fliM"
                     /locus_tag="KIL20_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HBD2720722.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            9149..9991
                     /gene="fliY"
                     /locus_tag="KIL20_000680"
     CDS             9149..9991
                     /gene="fliY"
                     /locus_tag="KIL20_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HBD2720723.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNASDTLKAP
                     LVYAIFDIANGGKIGILAGAVLMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            10060..10665
                     /locus_tag="KIL20_000681"
     CDS             10060..10665
                     /locus_tag="KIL20_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HBD2720724.1"
                     /translation="MDTKIIKDVEKFENIPDLEKAITFFGSARLKEDNFYYQQAKILA
                     QKCAQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            10665..11681
                     /gene="mnmA"
                     /locus_tag="KIL20_000682"
     CDS             10665..11681
                     /gene="mnmA"
                     /locus_tag="KIL20_000682"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HBD2720725.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(11709..11960)
                     /locus_tag="KIL20_000683"
     CDS             complement(11709..11960)
                     /locus_tag="KIL20_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HBD2720726.1"
                     /translation="MFFVFLVQLALGAPPLLYAFIMIASGNVMMALTHYAIGTAPVIF
                     GTGCVTLKKWWSIGFVISIVDIVVMIAVGLIWWKILGFY"
     gene            complement(12178..12393)
                     /locus_tag="KIL20_000684"
     CDS             complement(12178..12393)
                     /locus_tag="KIL20_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HBD2720727.1"
                     /translation="MFITATAPNPLVLYFLSPLEIKSTPNASTFTKDKLKELVKMKNS
                     EKIMLSVFVSLLLLWAGALGLFFWNFS"
     gene            complement(12336..12680)
                     /locus_tag="KIL20_000685"
     CDS             complement(12336..12680)
                     /locus_tag="KIL20_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HBD2720728.1"
                     /translation="MARGVIKTGLGEHLAYHFISILGKKTLGIAYSIAFCETILAPVT
                     PSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTYLSLVNYQEPILFHQLCLLQLQ
                     LQILWCFIFSLR"
     gene            complement(12903..13052)
                     /locus_tag="KIL20_000686"
     CDS             complement(12903..13052)
                     /locus_tag="KIL20_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
                     /protein_id="HBD2720729.1"
                     /translation="MEDNSWHFLGLFIAVIMAVILQVMPLGPVCMIAIAIVALSGITT
                     TQLKI"
     gene            complement(13280..13374)
                     /gene="ffs"
                     /locus_tag="KIL20_000687"
     ncRNA           complement(13280..13374)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="KIL20_000687"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
BASE COUNT         4968 a         2076 c         2150 g         4181 t
ORIGIN      
        1 ctttgaagaa gtcaaagaag aaaaagatga tgaaaatgca gtttatcttt atacatgtga
       61 atgcgtagga caaatgcatg atgtaccttt tggaattcat caaaaaattc aacttaaggg
      121 tgtaaaattt aaatgtaaaa aatgtaaaga agccatacag ttttataaaa aatattcaga
      181 aaatttctaa ttaactattt atgcgttaaa ataataaata aagtataagt tagacaaaga
      241 aggaaattta atggataaaa aaataaaata ttttattttg gataaatttg actattccta
      301 tcctatacta accaaagata caaaatgctc attttgtgaa aattttttcc cgatagaata
      361 tagctcaaac ttaaaaacaa tagaaaaaga atgtccattt tgcaataata aaatggacat
      421 taaacttaaa gactaagcct tagttttact tacaatatta ataatatttg aagctacttc
      481 atcagcaagt tctaaatggg aagtaaagcc tacacaagaa caattaatct cgcctaaaac
      541 atatttatca ttgccctttt catcagtatc taaaataaaa tcagccgtcc aaatcaatgg
      601 taagtcgtaa ttgcctaatt tttcccttac cttaggaagc tcgcctaaaa acatatccac
      661 caaagttttc caatcttctg gcttatcata gcgatatttt gccccactaa aaagcgtagc
      721 agaaaaagca tcagcatctt cagctggttt tttatgcact acatttacag gggtgttata
      781 aagcattaaa agtctgattt caccttcttt aatgcgcggt aaaaaagtca tatccacaag
      841 cataccatta tcacctatga tatattgctc acaaaaatcc ataaattctc caagttctct
      901 atgttctaca tgattatcct tagcttctgt gcatttgatt tttgtgttta aaggcaaact
      961 atctccacta acattaccct ctacactcac acgccaaatt ccctctcctg tagagccacg
     1021 attttgtttt aaaacccttt cacctttagc caaacttttt ggaaaatttt ctttaaaagt
     1081 cttaatatca tagtaagcat aagtatcgct tggaacaaga tcagtatctg ctaattttgt
     1141 aagcgcatct ttagcgccat aacctatcat agcatcagga tgaggcatac ctacaagctt
     1201 atcggcacaa agttttctta acatatcaaa atactcattt tcttctttaa gattgccagg
     1261 attgatgcga gaaacataac catcaaaatt ttcttttaca tatttgtaaa tttcatcttt
     1321 tttacccact tcaaaaaaaa tcacctcagc attccaaccc ttagctttta aggcatttac
     1381 cataggcata gtatcttttc tataaccatc ttcaccttta tcactcccac ctttaacttc
     1441 gaaaaaaaca atattttttt tcattatttt actccttatc taagatataa ataattattg
     1501 cataaaaata ttacaaaaat taaataaaaa tatttatata ttttatctag cgtttataaa
     1561 actgctatta gtcttataag cgatttcgat taagctttta cttatcaagc ttgatgtttg
     1621 tccttctagg cgattaagaa atttatcaat cttatcttct tctttccaaa caggatttga
     1681 aacattagca agtttttcaa gctccttttt agcattttca taattactaa gctcatctat
     1741 aagaccaagc tccttagctt tggcagctaa aaacactctt gcatttgccc attgatcttt
     1801 tttattaaga tctaatgctc tttccttggc aacaaaacct gtaaaaagat cataactttg
     1861 atcaattaaa ccctgtaaaa aatttctttc attctcattc caagctcttg caaaagttcc
     1921 agcactttta aattcacctg cttgaatagt ttgttcttta ataccgagtt tattagccaa
     1981 tccgcttaaa tcagctcctt gcataatcac accgatagag cctataaaac ttgctggatt
     2041 ggctaaaatt ttattagctc caactcctgc taaataactt ccgcttgcca tagttccgct
     2101 tgcataaaca agcacaggct ttttaatttt taaatccttt atagctagag ctagttccat
     2161 actaggagca aaagctccac caggagagtc tacaacaaaa agcactcctt taatattgct
     2221 atcattttta gcattgataa ttttttccaa aaccgcagag ctatcaaaaa tttcaccctt
     2281 taaatcaatg cgttctaaat ttgcaagatt ggagcttgaa tttgcactag gcattaaaat
     2341 ccatataaca atcaacaata aaacaaaggt tttaaaataa gtattgataa attttatacc
     2401 gcatcctaaa gccttaaaaa atgattttaa aatttgcatt cttttccttt tataaataat
     2461 ttatccactt ccttagcatt taaaataaac tgcaaaggag cttgcttttt atcacattct
     2521 cctagctcaa atacgctaaa atcagcaatt ttaccttttt taagctctcc taaatttaaa
     2581 tttaaagccc ttgcaggata aagcgttgcc atttgcaaaa gcttagaggc taactctaat
     2641 aaatcaaaat tcttatgtat aagcaaattc gcgcgcattt catcaagtaa ggacaatgaa
     2701 atatttgagc taagtccatc ggttcctaaa tggatattca atccactttt taaagctgtt
     2761 tttaaatcta agcttttttg acttaaaagg cgatttgaaa atgcacaatg tgtaatagaa
     2821 tgtaaatttt tatccaacca ttcatattct tttagataaa cacaatgcgt aaaaagagtc
     2881 cttactcctt taaagagttt agcaaaatcc tttggtgcat aaagaggctt aggatgaagt
     2941 gtgaaatttt caagccattt tttaaccccc cctttagact ctctaagcca gatattttca
     3001 gccttgcttt ctaaaaaatg cgtgctaact agtaaatttt gctttttagc taaatcaaga
     3061 gcaaaataag ccaaactagg atgagttgaa taaggagaat gaatcgaaat tgctgggata
     3121 aaaaaatcat ttttaaattt caaagaattt tcaaatcttt ttaaaaattc ttgtttttta
     3181 tcttcaactt gattttcatt tgtacccaaa atttcattaa aaaatactac acgtataccc
     3241 ttttgactag cctttaaaca aggatctaaa tcactcccaa aacttgaaat ttcacctata
     3301 gtgcctatac cgcttttttg cattttttta atgctttgaa gtattaattc ttctttggcc
     3361 tgcgcattta acatggaacg agaatttata acacttttaa gccaaattaa aaattctcca
     3421 aaatgtaaag ttgttgaatt tgcactaaat tctaagtgtg tgtgaggatt tataaaagca
     3481 ggtaaaataa ccgaattttt aggtgttttg ataattttag ccttgggata tttttttctt
     3541 aaattatcca attcacccaa ttctaaaatt ttatcttcaa aaacaaaggc ttgattttct
     3601 agtattgtaa aatcttcatc gcataaaaaa agatatcttg cagcagctat aaacacgatt
     3661 ttcctttcaa aaattacatt gtagcaaaaa tttattttta aaatgttata ataaaaggtt
     3721 aaaaataaat ttttaaggtt aaatccatga aaataatgat tatccaaggc ccaaatgtta
     3781 atatgcttgg cgtaagagaa gtgggaattt atggtgctat gaaaatggaa gaaattcatg
     3841 agcaaatgaa acttgcagca tcgcaaaaca atgtagaact tgactttttc caaagtaatt
     3901 ttgaaggtga aatcgtagat aaaattcaag aatgccttgg aacagttgat ggaattatta
     3961 tcaatgcagc aggctatact catacttcag tagctattcg cgatgctatt gcagcagtag
     4021 ctttacctac aattgaagta catattagca atgtttatcg cagagaagaa tttcgtcaaa
     4081 aaagtcttat agcgcctgta tgttctggaa ctattgttgg ttttggtcct tttggctatc
     4141 acttggcttt aatgggtata attcaaattt gcgaacaaat aaaaaatttg cgcgcgatgc
     4201 aacaagcaca acaaacgaat aaataataat gctaaaaatt caaggagtaa aacactttga
     4261 aaaaagtcgt ttttttcctt tttttagtca aaatatacga tcttttaaat atttagctct
     4321 tataggctta ggaagcaata tagagcccga aaaaaaaaga tttgatatgc tttttcgagt
     4381 aatgatggat gataaaagat ttaaaatttt atccacatct cctatgttga taaatgaagc
     4441 ctttggtttt aaagagcaaa aagattttac caatgctgtt atgttgatac aaactaattt
     4501 gcatgcacga gcacttttga aagttttact ttattatgaa gtaaaattta aacgcaagag
     4561 aactttcaaa aacgctccta gaacgcttga tttagatctt ttatactttt cacaaaaagt
     4621 caagcgtgat aagtggtgtg aggtgcctca taaaggggct aaagaaagag tgagtgtaat
     4681 tttgccttta ggcatgatat aaggaatata aatgggacaa cttatacata cttttactgt
     4741 tgaagataca gaacaaatta tacccaaagt aaaagaagat tacggagata aagctttaat
     4801 tataacaaat aaacaaattc gtcctaaaac cttaaatcgc agtgcgcttt atgaggttat
     4861 ggtagccata gaagaaagcg actatgaaga acacttaaaa aaacaaggaa aatctttacc
     4921 tgcaaaaaaa agctcgccaa aaccatcttc tacctctctt gcagaagaaa aaattagatc
     4981 tcaaatccct caagaagatg aagatgtagt cttggatttc tcaaacactc gcttaaatac
     5041 aaatttaaac actgtaaaaa acaatgactt aactaaaaaa acctatcaag attttccaca
     5101 aaacaaaatc aaccctcatc aaaataagac tctaggcttt gatgatttta aagaaaaact
     5161 aagtgaagtt agcaatgaaa tttctaaagt cacaaacaca cctttagaaa attacacccc
     5221 taatccaaat tataataaaa aaatagaaaa ttttgaaaag caatttgaaa aacaaatcaa
     5281 caagcttaac gataaaatag atcttcttgc agatatgatg tgggacgata aagctgaagc
     5341 tagaaaaaat cttatgatac ctcctgaatt tgcaagtatt tataaacaag ccaaagaaag
     5401 tggaatgctt gaaaatcatc tagaagcgat tatgaaagca actatagaaa atatgccagc
     5461 tgctatgaaa accaacaaag atgcggttca aagatatttt cactcacttt taagaaatat
     5521 cttgccttgt cgtgttgaaa gcgatataaa aaaacaaaaa atcatgatgc tagtaggccc
     5581 aacaggagtc ggaaaaacaa caaccttagc taagttagct tttcgctatg cttatggaga
     5641 taagcgttat aaaacaggta ttattacgct tgatacttat agaatcggtg cggttgagca
     5701 actttttcag tatgcaaaaa tgatgaaact tcctattatt gatagcatag aaccaaagga
     5761 tttagatgaa gcgataaaaa gcttaaataa ttgcgaagta attttagttg atactatagg
     5821 aaattcacaa tacgatcaaa gcaaacttgc taaaactaaa gaatttttaa tgcactcaaa
     5881 tgcagaaatt gatgtaaatt tagtggtttc tgcaaacacc aaacatgaag atttaatgga
     5941 aatttataaa aatttttcat tcttaaatat tgatactttg attattacta aatttgatga
     6001 aacaaaggtt tttggaaata tcttctctct tatttatgaa acaaatattc ctctaagctt
     6061 tttctctaca ggacaagaag tgccagatga tttagaagta gccaatagtg attttctagt
     6121 tcattgtatt ttagaagggt ttaacaaagg aaaaaataat gaataaccaa gcaaataaac
     6181 ttcgcaatct catgagtcaa aatggaacca aaaaatccca aaacactcat tttatagcta
     6241 ttacaagtgg aaaaggtggc gttggaaaaa gtacgattag cgcaaatcta gccaatgttt
     6301 tagcaaataa tggctataaa gttgggcttt ttgatgctga tattggcttg gcaaatttgg
     6361 atgtcatttt aaatgtacgc atacaaaaaa atctcttgca tgttttacgc ggagaatgtt
     6421 ctttggaaga tattttaata gaagttaagc caaatttatg gctcatccca ggcgaaagtg
     6481 gagatgagat tttaaaatat aatgataaaa atatttacga gagattttta aatcaagcaa
     6541 gtattttaga tgagcttgat tttcttatta tcgacacagg tgcgggtatt ggtggaaata
     6601 ttttaaattt tttagaaatg gctgatgaag ttatagtagt aactgttcct gatcctgcag
     6661 caatcactga tgcgtatgca accataaaaa caacttctaa gacaaaagaa aatttactaa
     6721 tgctctttaa tgttgtaaaa aatgaaaatg aagctttaaa agtttttgaa aatattaaaa
     6781 aagttgcaga tgcaaacatt aaaaatcctt taaatttaga attcttaggt catttaagcg
     6841 cttctaaaga tgtaagtggt agtattaaaa aaagaacttt atttagcgat gaaaacacag
     6901 cctcaagtga tgagcttaaa gccctagcct ccaagctttt atatagattg gaacggaaag
     6961 tgcttgataa tgtttcaaat cgtagttttt caagtttttt tagaaaaatt attgaaagat
     7021 tttagcaata aagagaagag attatgaggc cagaaaatta cgtagcattt ttcactgttt
     7081 gtggattttt tataggactt gcatttagca ttattagtat agatgaagcc tttgatatac
     7141 tgatttttac ttgttttatt acttttatgt tttatgtttt tgttcatatt gctattatga
     7201 attttataga tgtaaagaaa attagtggca gaatctttaa taaacacgat tatgaaaaaa
     7261 ctagcaataa tattatcaac gatttagtta ttcgtgaaaa gaaaatggat ataattttag
     7321 aaaagctcaa tgaagaaaga gaagagctaa agaaaaatga atccaaagaa agacgaagaa
     7381 atgctaaaag agccgcctaa agcttatgca caaatgctaa agaaagagca agatgagctt
     7441 gtactttctt acatgccagc tctacgtgct atggctttta gactaaaaga acgcttgcct
     7501 tcaagcatag atgttaatga tcttattagc ataggcgttg aagaaatgat aaagctttca
     7561 cgccgttacg ataaagaaca aaataataac ttctggggtt ttgcaagaaa aagagttaat
     7621 ggctctatgc ttgattatct tagaagtctt gatgtaatga gtcgcaataa tcgcaaaatt
     7681 attaaagata ttgatgcaat catggatgaa tatttccttg agaatgaatg cgaacctgat
     7741 gatgagtatc tagccaaaaa acttgattta gatgtagaaa aaatcaaaga ggtaagaaca
     7801 gctcatgcta ttagctatac cctgcccatc gatgagcaaa tcgaacttta taacgaagac
     7861 aatactttag aaaaaattga aaaagaagaa cttttagaaa aaattcacga agtgctagat
     7921 gatcttaaag agcgcgatca gttaattatt cagctttatt attatgaaga attaagccta
     7981 aaagaaatca gtgaaatttt acaaatcagt gaaagcagaa tttcacaaat tcacaaaaaa
     8041 cttcttaaaa aacttagaga aaggctagtg taatggctga gatactttcc caagaagaaa
     8101 ttgatgctct acttgaagtt gtcgatgata acaccgacac acccatagcc tcaaattcaa
     8161 aagatgaaaa agatgaaaga aatatcgttg tatacgattt taagcgtcca aacagagttt
     8221 caaaagaaca acttaggacg attaaaggca tacatgataa attggcaaga aatttagcct
     8281 ctcaaatttc atcaatgatg agaagtattg ttgaaactaa acttcattca gtcgatcaga
     8341 tgacttatgg agagttttta atgtctttgc caagcccaac aagttttaac gttttttcta
     8401 tcaaaccttt agatggaaac tgtgttttag aaatcaatcc aagcatagct tttcctatga
     8461 tagacaggct tttaggtggt caaggcgata gctatgaagc ttcgcgtgag cttacggata
     8521 ttgagcttaa tttgcttgat tctattttgc gtatcattat gcaaagactt aaagaaagtt
     8581 gggctactgt aactgaaatt tatcctagta tagaagctaa agaatcaagt ccaaatgttg
     8641 tgcaaatcgt atctcaaaat gagattgtta tcatggtagt aatggaaatc atcataggaa
     8701 attcaagcgg tatggtaaat atctgctatc ctgtagtgca tttagaaagt atattaagcc
     8761 gtttggcaaa ccgcgacatt atgatgggtg aaacctcagc caaaaaatca cgcaacaaag
     8821 aacttaaaac tttaatcggt cgtgctgaag tggtatatga ggcaatttta ggaaaaacct
     8881 taattaatgt tcatgaattt ctagaactta aacaaggcga tatcttaaga cttgatagag
     8941 aagcagatga taaagctata gtaagcatcg ataaaaaaga tgttttctta gcgcaaattg
     9001 gattgcatcg ttttagaaaa tctattaaaa ttttagaact catacgcaca gataaagatg
     9061 aaatcaaaga aattttggaa aaatacgaag aagaacgtaa agctaaagct agtgtttatg
     9121 atgagcctga agaggaggat gaagaaatat gatcaatgat tttttaaaaa tgtttacaaa
     9181 tgaatgcatc agcaccattg aaggtttaac aggaaaaagt gctgaattta gcgaatacaa
     9241 agaatttgat gtcaatgcaa gcgatacttt aaaagcacct ttagtgtatg ctatatttga
     9301 tatagcaaat ggtggaaaaa taggaatttt agccggtgct gttttaatga gtgctattgg
     9361 tgaatggatg atgggtgaag aagagatcac caaaaacgat aaactaggtc ctgatgaaat
     9421 ggatgcagct aaagaagcca tccaaaatat catttcagca ttttctacaa ctttaggagc
     9481 tcaaaaagac attccaaaaa tggattttag tatagaatct tgtgaatttg tgcctgaaag
     9541 cgtagatttt aaagatttta aaaaattatt tttatatgat gtaaaaatag gcgatttaga
     9601 agaacaagtt tctttagcca tggatcaaac acttcacaac attctaagtg gaaaacctgc
     9661 tgaaacagga aatacaagca ctgattctaa tcacaacgct gaagaaaaag cgataatgct
     9721 tagcgaagaa cttaaaaata tcaatcttat catggatgtt cgtttgcctg tgcgtgtgcg
     9781 tataggcaat aaaaaaatgc ttttaaaaga tgttttaact atggatatag gttcagttgt
     9841 ggagcttaat caacttgcaa acgatccgct tgaaatttta atcggagata aaagaattgc
     9901 ttatggcgaa gtagtaattg tcgatggtaa ttttggtgtt caaatcacag aaatcggatc
     9961 taaaaaagaa agattagagc aattaagata aaattactct ataaatttaa aaaaattagc
    10021 tataatgatt ttttatagtt ttgccaaaaa aggtatttga tggatacaaa aatcataaaa
    10081 gatgttgaaa aatttgaaaa tatacccgat ctagaaaagg ctattacttt ttttggttca
    10141 gcaagactta aagaagataa tttttattat cagcaggcta aaattttggc acaaaaatgt
    10201 gctcaaaatg gtttttgtgt gataagtggt ggaggtggtg gtattatgcg tgcagccaac
    10261 gaaggtgctt tttcacaaaa aaataataca aattcaatga gttctgtagg gtttaatata
    10321 tttttacctc acgagcaaaa acttaatgat tttgtagaat ataatattac ttttgagagc
    10381 ttagccatac gcaaaatggc tcttattgaa aagagtctag cttttgtgat cttcccaggc
    10441 ggctttggaa cacttgatga attgtgtgaa attcttacat taaaacaatt agaatttaaa
    10501 aaagatgttc ctattatttt gtttgggagt gaattttggc gaggttttga tgagttcgtc
    10561 agaaattctt tactcaaact tgaagtgatt tctaaaggag atgagttaaa gtataaaatc
    10621 actgacgact tggattttat aattaatact ttaaaggaaa tttaatgaaa attctagtcg
    10681 ctatgagcgg tggagttgat agtacagtca ctgcttataa acttaaaaat ttaggtcatg
    10741 aagttatagg ttgttatatg aaacttcatg gcaaaccaaa ttatcacgaa gaaaatatca
    10801 aaaaagtaga aaaagttgca aactttttgc aaattcctta tcatatttta gacttacaag
    10861 aagattttaa aaacaaagtt tacatgcctt ttgtggatac ttataaagag ggtaaaacac
    10921 caaatccttg cgctttatgt aaccgtttta tcaaacttgg aaaactttta gaatttgcta
    10981 aaagtttagg ttgtgaaaaa cttgccacag ggcattatgc aagacttgaa aacaacttaa
    11041 taaaaaccgc agtagatgaa agcaaggatc aaagctattt tttagctagc gcagataaag
    11101 aagctttaaa atatcttatt tttccgctag gcgaaatgaa aaaagaagat gtgaaaaaat
    11161 ttgcttccac tatagaggtt ttaaaatctt ttgccaccca aaaggaaagt tctgaaattt
    11221 gctttgttga agatacttat gtgcaagttt tagatcagtt tatggataca aaaattcctg
    11281 gagaagtatt agatagtagc ggaaaagtgg taggcaaaca tgagggctat atgcactata
    11341 ccataggcaa aagaaggggc tttgaagtgc gtggggcaca tgaaccacat tttgttttaa
    11401 aaatcaatcc taagcaaaac caaatcatcg taggaaccaa agaagaactt aaaatcagtg
    11461 aatttaacct aaaaaatatc aatcttttta tagacgctaa agagcttgat tgcgaagtga
    11521 aaatccgcta tcgttcaaaa tccacacctt gcaaggtaga aatttatgaa gataaaagtg
    11581 caaaaatcat cctaaaagat cctgtttatg gacttgctag cggacaaatg gcagtctttt
    11641 atgatcatga taaagtcata gcaagcggtt ttatagaata atttctagga attaattcct
    11701 agaaattatt aataaaatcc taaaattttc caccaaataa gcccaacagc tatcatcact
    11761 actatatcaa ctatggaaat cacaaaacct atactccacc attttttaag agttacacag
    11821 cctgttccaa aaataacagg agctgttcct attgcatagt gagttaatgc catcataaca
    11881 ttacctgaag ctatcataat aaaagcataa agaagtggtg gtgctcctaa ggcaagctgc
    11941 actaaaaaaa caaaaaacat tgctgatata tgagctgcaa tggaagcaaa gaaatagtgt
    12001 gtatataaaa aaagcaaggc ttaaaaatat cataatagaa atttccccaa gtcccatagc
    12061 agaagcaaat tcaccttaag cttcagctaa aaactgtgta acgccaagtt tgccaagtaa
    12121 agttgccatc attacaagag ctgaaaacca tactaaagca aagccacact agtcgcatca
    12181 agagaaattc caaaaaaaca agcccaaagc tccagcccat aaaagtaaaa gcgagacaaa
    12241 aacactgagc atgatttttt cactattttt catttttaca agttctttta atttatcttt
    12301 agtaaaagta gaagcattag gcgtggattt aatttctagc ggagagagaa aataaagcac
    12361 caaaggattt ggagctgtag ctgtaataaa catagctgat gaaataggat tggctcttga
    12421 taatttacca aagaaagata agtgcctatt ttattttgtg ttccatcttc aggagtggat
    12481 ttaaaacttc ttgcaataac ttgaactata ggatttatga tagcccctgc tcttgcagta
    12541 tttgaaggag taactggagc taaaatagtt tcacaaaaag ctatagaata agcaatacct
    12601 aaggtttttt taccaagaat actgataaaa tgataagcca aatgctctcc aagtcctgtt
    12661 ttaataactc cacgagccac aataatagaa taactataag ctaaataaga gaatttgaaa
    12721 aaccacttaa agcgtctttt atacccgttt tagattttaa atttgatata gcagtattta
    12781 ccttttcatc ttatactctt ttgatataaa aaatcaagta ctgaagtatt taaaggaaat
    12841 tttagtctca tcaataagtt gttgcgtaga agttttcgaa gtagctttgg tgtaaatttt
    12901 acttagattt tcaattgggt agtggtaatg ccactaagag ctactatggc aatagctatc
    12961 atacaaacag gccccaaagg cattacttgt aaaatcactg ccataattac agcaataaaa
    13021 agcccaagaa aatgccaaga attatcttcc aaacctacaa ggagtaggta taggccaaaa
    13081 cacagctgca attaaaatac gcagcaccaa caagggaatt ttctttctat ccattgttta
    13141 tcttttgata ttggtaatga aattctagtt aactaatatt ttaataaatc ttaaaattat
    13201 aatttttaaa taaattttta atttataaaa aagctagcct gattgaaaaa taaataggga
    13261 attttaaaat gaataaaacc cttccccaga taactgcggc acacactaaa atcaagtgct
    13321 ctgctgtgtt cccaccctga agcggtgctt aaaaatagca ttgcacaggt ctaag
//
LOCUS       DAEBKH010000034        13090 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.034, whole genome shotgun sequence.
ACCESSION   DAEBKH010000034 DAEBKH010000000
VERSION     DAEBKH010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13090
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.034"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..515)
                     /locus_tag="KIL20_000688"
     CDS             complement(<1..515)
                     /locus_tag="KIL20_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720730.1"
                     /translation="MKFFLLVFCFVNLALAQVYKGELYFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIVDDINGNLEIPLVKTNDFWQDERKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFHPVHKGVFSFEQIRQKPIFLQD
                     GKISFEEWYYF"
     gene            complement(526..1002)
                     /locus_tag="KIL20_000689"
     CDS             complement(526..1002)
                     /locus_tag="KIL20_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720731.1"
                     /translation="MKHCLALCFIFFLCACSVKNQNFSSQSLMVLIASPMIKINDAAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKKVFNQKFFKNVYYDDILSDIL
                     KANALWQGKNLEKTDCGFEQNLKAKNYEIFYQVCDNKVSFFDKISHTKIILTHIQN"
     gene            complement(1011..1502)
                     /locus_tag="KIL20_000690"
     CDS             complement(1011..1502)
                     /locus_tag="KIL20_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HBD2720732.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKAIKDSKLKVNSSIRGEEIRVVAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(1492..2427)
                     /locus_tag="KIL20_000691"
     CDS             complement(1492..2427)
                     /locus_tag="KIL20_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HBD2720733.1"
                     /translation="MKIVCLDAATLGDYDLSIFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGINNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQIPYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGSIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKHLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(2430..3599)
                     /locus_tag="KIL20_000692"
     CDS             complement(2430..3599)
                     /locus_tag="KIL20_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HBD2720734.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVIDNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLSHIANEAGFQTNFSFVDEVEFS
                     EEGVFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKVIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(3609..4214)
                     /locus_tag="KIL20_000693"
     CDS             complement(3609..4214)
                     /locus_tag="KIL20_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HBD2720735.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSTSSAKKSGFFGGGSKAASSSSSFGS"
     gene            complement(4337..4549)
                     /locus_tag="KIL20_000694"
     CDS             complement(4337..4549)
                     /locus_tag="KIL20_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HBD2720736.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            4709..6085
                     /gene="ccoG"
                     /locus_tag="KIL20_000695"
     CDS             4709..6085
                     /gene="ccoG"
                     /locus_tag="KIL20_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HBD2720737.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFALPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNINNKQKEYGGQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQN
                     PGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRG
                     GLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNIN
                     RSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFK
                     LKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTL
                     IKDKNELK"
     gene            6072..6704
                     /gene="cmeR"
                     /locus_tag="KIL20_000696"
     CDS             6072..6704
                     /gene="cmeR"
                     /locus_tag="KIL20_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HBD2720738.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMDFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINGSKA"
     gene            6798..7901
                     /gene="cmeA"
                     /locus_tag="KIL20_000697"
     CDS             6798..7901
                     /gene="cmeA"
                     /locus_tag="KIL20_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HBD2720739.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMARATFENASKDFNRSKALFSKNAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTVGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQSGKWDLDSIHANLNLNGETIQGKLYFIDSVIDANSGTVKAKAVFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQDQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            7901..11023
                     /gene="cmeB"
                     /locus_tag="KIL20_000698"
     CDS             7901..11023
                     /gene="cmeB"
                     /locus_tag="KIL20_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HBD2720740.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGVISLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNDDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALVLAIGIVVDDAIIVVENIDRILHENEQINVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLNKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAAANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            11016..12494
                     /gene="cmeC"
                     /locus_tag="KIL20_000699"
     CDS             11016..12494
                     /gene="cmeC"
                     /locus_tag="KIL20_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HBD2720741.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSSF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNT
                     KYSYANSIVDVIKAFGGGFEQSEDTSKNIKEESKNLDMSFRE"
     gene            complement(12517..12768)
                     /locus_tag="KIL20_000700"
     CDS             complement(12517..12768)
                     /locus_tag="KIL20_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720742.1"
                     /translation="MDKAKIVQNLNALFKQRAEFYSYFDENIAKINNTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKAYEITDADLDKDF"
     gene            12896..>13090
                     /locus_tag="KIL20_000701"
     CDS             12896..>13090
                     /locus_tag="KIL20_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase"
                     /protein_id="HBD2720743.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPKEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYY"
BASE COUNT         4553 a         2127 c         1873 g         4537 t
ORIGIN      
        1 taaaaataat accattcttc aaaactaatt tttccatctt gtaaaaaaat aggtttttgg
       61 cgaatttgct caaagctaaa tacaccctta tgaacaggat gaaattcttt aaaatcatca
      121 ttaaaaccta taaaatcaag actacgcttt atacgaatgc catcttgcgt ttcgacaagt
      181 tctaaagtag ttgttcctaa attttctcct tgaaaatttt tattatcata cgtaagcatt
      241 ttagaagaat tgattttata ttttttacgc tcatcctgcc aaaaatcatt tgtcttaacg
      301 agcggaatct ctaaatttcc atttatatca tcaacaatta aaaaactaga acttgtttga
      361 tttttatccc tgtcaaaaag tggggtcata ggtgcattat cataaactat ggcaaaaatt
      421 tctttatcct gcaaatgata aaaatacaat tcacctttat aaacttgcgc taaagctaga
      481 tttacaaagc aaaataccag taaaaaaaat ttcaaactct atccttcaat tttgaatatg
      541 cgttaagata attttagtat gtgaaatttt atcaaaaaaa cttactttat tatcacaaac
      601 ttgataaaaa atttcataat tttttgcttt taaattttgc tcaaaaccac aatcagtttt
      661 ttctaaattt ttaccctgcc ataaagcatt tgcctttaaa atatcactta aaatatcatc
      721 ataatataca tttttaaaaa atttttgatt aaacactttt ttatcataac acactgcatt
      781 gatacaaatt ttatctttga ttttgagttc aaaaaaagct tgccctagtt tataaacttc
      841 caaatttaaa gcattatttt ctttttttaa aaaagctgcg tcattgattt ttatcatagg
      901 agaagcaatc aaaaccatca agctttgact tgaaaaattt tgatttttca cactacaagc
      961 acaaagaaaa aaaataaaac acagagctaa acaatgcttc aaatttgacc ttatttaaga
     1021 tttttaaaac tgatatttaa ctctaaatca agctctttta caagcttcat tacagcttgt
     1081 aaatcatcaa tttgttttgc tacaacacga atttcttcac cacgaatcga agaattaact
     1141 ttaagtttgc tatctttgat agctttattg atttttttgg cattttcact atcaatagca
     1201 tcgtttgctt tcaaatttaa acgaaacatt gctccacttt cacgagaaag ctctttaata
     1261 gcattaggat taattcctct tttgataagt ttagaaatca ctatatcttt taaaacatca
     1321 agctttcctt cactagaaga actgagttta aaaatactct ctttttcgct taaatcaatc
     1381 tcacacttaa ttccttttaa gtcataacga ctatcaagtt cttttttagc ttgttcaaaa
     1441 gcatttttta actcttgttt atccaaagct gctgaaatat caaaactatg ttcacttgcc
     1501 attttctatc cattctttta aattattata aactatatcc attaaagcat ttaaagcctc
     1561 cttgctcgcc cacgcaacat gaggagtgat aataagattt tctttatttt taatgcttaa
     1621 aagtggatga tttttcatca taggttcaat ttctaaaaca tcaagcccta cacgaatatt
     1681 tttttcatct atgattttag ctaaatcatt ttcattgaca atcccacctc ttcctacatt
     1741 aatcaaaatc gcattatctt ttaaatgctt taattcttca aaggcgagta aatttttggt
     1801 tttttcattt aaaggtgcgt ggatacttat aatatcgcaa gtttttaata aatcttttaa
     1861 ttccaaatgt acaaaatctg cgtttttatt agctccactc gtagaataat aataaatttc
     1921 ggctccaaaa gcctttgaaa tttttgccac ttctttacct atgcttccta aacctataat
     1981 accatgtttt ttaccactta aggtgtttaa aattctacta taatctgtaa aaataggact
     2041 ttcacaccat ttaccctctt tgctccattt gtcataataa ggtatttgat ttaaaaaagc
     2101 aaacataaac gcaaaagtat gttgcaccac actcatagta gaatacccag cagcattttt
     2161 tacaataata cctttttctt tagcatactc aatatcgata ttattaatcc ctgttgcagt
     2221 ttctaaaatg agttttaaat ttttacaagc atcaatcaca tctttatcaa ttacaacctt
     2281 gtttgtcatg gcgacattag catcttttaa acgctctatg gtttgctctt tatttgttgt
     2341 agtataaatt tgcaaagaac caaatttttc aaaaatactt aaatcataat cccctaaagt
     2401 tgccgcatct aaacaaacaa ttttcatttc taatccttta taatatgtcc tacaaattta
     2461 gaataattat caagcacaag tcctcctttt ctaaatccta agccacaccc ttcataagca
     2521 aagaaaacac ctgcttgata gtattcgttt tcacatgaat taaactctac atattcttga
     2581 taaataacct tattattccc ataaggacct acattctcat gtaaagtttt tccatcttta
     2641 attatactga tatttgcgcc ttctctacca aaaacaggtt ttttaacata gtttttacct
     2701 tccaaaggag tatcttttgt ttctaaaagt aatggatgat ttggataaag ttcccataga
     2761 atttttaaaa ttcccttaga ttgaaataaa agcgtataag caggatttaa aataattgct
     2821 ctttgattac gcataatttg agttaaaagc atggcaagtt caccctcttc tatggctata
     2881 tcttcccaag gaataagctt aaaccaatac tcataatttt caccctcttt aaaaacaccc
     2941 tcttcactaa attccacctc atctacaaag gaaaaattag tttgaaaacc tgcttcattg
     3001 gctatatgag aaagcaattt tgtagtgatt tcttcttctt tacttcctgc aacacttgaa
     3061 aaaagaattt tccatccttg ataatgctct tcaaaccctt caacactttc atcaagggta
     3121 ataagtcttt taaaattatc catcaaactt tcataaatgc tgttaaattg tgcactttca
     3181 tccattccat tttgttttaa aagcgcccat tgtaaaatcg cactttcaaa aagagcagta
     3241 ggggtatcag cattaaattc tataagtttt ataggcttgc catcaagtcc acccgctaaa
     3301 tcaaaacgcc catataaatg ccaatgcact tcattttccc aactcatctt aatcgcatca
     3361 ataagattaa aaggaattcc aagctcatca aaacgatcat tatcaatcac ttcttgcgct
     3421 gcagcaataa acatatcata aagttcattt actgcttcat aataagcatt agcttcgctt
     3481 tctttaacac aaactaactt attgctaata taatcacttc catcttcatc tgtatgccaa
     3541 gaaaaaccta tattttctaa ataatctttt tgaagtttat ctacttgtag taattgcatt
     3601 atttatcctt aagagccaaa agaggaacta gaacttgcag ctttagagcc tccaccaaaa
     3661 aaacctgatt ttttagcact tgaagtagaa cttgttgtgc ctgctttatt aaaactattg
     3721 acacttcttt gataagcact ttgatttgaa aaagcaccgc gttgttgatt agcaaaattt
     3781 tgattattga aaagttttga acctatccaa cttcccaaaa tagcacctgc agcacttgcg
     3841 agtaaagttt ctcctaaact caatccccca ctactgattt gcccattatc tttagttaaa
     3901 tttgaagttc cattgtcaat tttagctgct tcttctttaa tcaaagcatc catttcttct
     3961 ttggataaaa ttctttctgt accattaaga tcttttaaaa ctacccttgt ttcatcactt
     4021 ggatattgat ctttgatttt atactgccct ggagctgttt cttcgataat tacaaaagct
     4081 ccttgagcat tagctgcttg atttaaagta tctgcattgt cattattact tccacaacct
     4141 gctaaagcac ctccagcaac agctgctaaa ccacctatca taccaatttg aatgattttt
     4201 ttgatttttt tcatagagtt tatcctaaaa acagaaaatt taaatttaga aattttaaca
     4261 aaaaataata aatacttttt aatttaatac caaatgaagt tcgtagatat aaaaaaagcc
     4321 ctttcgggct tttgggttag agtcttgact cgtagcgtct aagcatataa agtcttttaa
     4381 gcattttttt gcgtgctgaa attttttgtt ttttgcgaat ttcagtcata ggctcgaaaa
     4441 atcttcttgc tcttacttca gttacaacta gatttctatc tacttgtttt ttgaatttac
     4501 gatacgcttc atcaaaagac tcgttaggat gcaccttgat tcctggcaca gtcctcacca
     4561 cctttctgtg taaatttttg ttgtgaaata taattataaa acacttctta ttaattctaa
     4621 cttagaaagc atttaaaaat tgttttagtt tttatcggtt ataatcctta attacaaagt
     4681 gctaaaaaat tataattaag gtctaaaaat gcaaggacac attacaaact atacaaaaaa
     4741 acgatatttt gtatatttaa ttgcaagtat tatcatattt gccctacctt tcataagaat
     4801 taatgagaat catttttttc ttttaagttt tgatcattct aaattaaacc tattttttat
     4861 ttctttttca acacaagaat tttatctcat gccttttgtt cttatatttc tttttttatt
     4921 tatttttttt attacaactt taggtggaag aatttggtgt gcttggagtt gtccacaaac
     4981 gatttttaga gttatatata gagatatcat acaaactaaa tttcttaaaa ttcgcaaaaa
     5041 tatcaataac aaacaaaaag aatatggggg gcaatatttt aaaaaatttc ttggagtaat
     5101 aattttttat tttatatctt tagttgctgt tagtaattta ctttggtact ttattcctcc
     5161 tgaagatttt ttcaattata ttcaaaatcc tggcgagcat ctacttttac ttggaatttt
     5221 attttgtgct agcttacttt ttactttgga tattacctat ttacaagaaa aattttgtgt
     5281 ttatgtctgt ccttatgcaa gaatacaatc tgtaatgttc gatcatgata caatgcaagt
     5341 gatctacgat gaaaaacgcg ggggcttgat ctatgatgga cacaccaaac ttcataaaaa
     5401 accgcctgag ggagaatgca taggttgtga agcctgtgtt agcatctgtc caactcatat
     5461 tgacatacgc aaaggaatgc aacttgaatg tattaattgt cttgaatgtg ccgatgcttg
     5521 ctctaaggta caaagcaaat ttaatcgtcc aagtttgatc aattggacaa gtgcaaaagc
     5581 tattgaaacg cgttctaagg ttcattattt aagatttaga acgatagcat attttatagt
     5641 tcttttaatt gctttattgg ctttaatcat catgggaagc aaaaaagaaa gcatgctttt
     5701 aaatatcaat cgtagtagtg aattatataa tatttcaaat gttaaaggtg aattagtcat
     5761 ttcaaatgct tatacctttt tgtttcaaaa tacagattct aaacctcatg aatattattt
     5821 tacagcaaat ttagaaggaa taaatgatgg aattgaaatc ataagaccaa acaaaccttt
     5881 taaattaaaa gcaggagaac aagtcaaaaa aatagttgtt atcagggcta caaaaaattt
     5941 agcaaataat gataaaaaag atgtaatctt tcctttacat ataaaagctt acgcaaagga
     6001 taatgaaaaa atttcggttt ttagaaaaag tatatttgta taccctaaaa gcactcttat
     6061 aaaggataaa aatgaactca aatagaacac catcacaaaa agttttagcc agacaagaaa
     6121 aaatcaaagc agtggcctta gagctttttt taacaaaagg ataccaagaa acaagtttga
     6181 gtgatattat taaattatcc ggaggatctt attctaatat ttatgatggt tttaaaagta
     6241 aagaagggct attctttgaa attttagatg acatatgtaa aaaacacttt catcttattt
     6301 attccaaaac acaagaaatt gaaaatggca ctttaaaaga aattttaact tcttttggtt
     6361 tagcttttat agaaattttc aatcaaccag aagctgtagc ttttggtaaa attatctatt
     6421 ctcaagttta tgacaaagat agacatcttg ccaattggat agaaaataat caacaaaatt
     6481 tttcctataa catacttatg gattttttca agcaacaaaa taattcttat atgaaaaaaa
     6541 atgcagaaaa acttgctgtt cttttttgta ctatgttaaa agaaccttat catcatctta
     6601 atgttttaat taatgctcct ttgaaaaata aaaaagaaca aaaagaacat gttgaatttg
     6661 ttgtaaacgt ttttctaaat gggatcaatg gctccaaagc ttaaaaataa ttttattaac
     6721 caaaattaag atataattag ccaaaaattt ttgtaataaa tattacaatt tttaatttaa
     6781 tttttcaagg caaaaccatg aaattatttc aaaaaaatac tattttagct ttaggtgttg
     6841 tgcttttact cactgcttgt agcaaagaag aagcaccaaa aatacaaatg ccgcctcaac
     6901 ctgtaacaac catgagtgct aaatctgaag atttaccact tagttttact taccctgcta
     6961 aacttgtcag cgattatgat gtcattataa aacctcaagt tagtggcgta atagtaaata
     7021 aactttttaa agctggggat aaggtaaaaa aaggacaaac attatttatt atagagcaag
     7081 ataaatttaa agctagtgtt gattcggctt acggacaagc tttaatggct agagcaactt
     7141 ttgaaaatgc aagcaaggat tttaatcgtt ctaaagctct ttttagtaaa aatgcaatct
     7201 ctcaaaagga atacgactct tctcttgcta catttaacaa ttcaaaagct agtctagcaa
     7261 gtgctagagc acaacttgca aatgcaagaa ttgatctaga tcataccgaa ataaaagctc
     7321 cttttgatgg tactgtagga gatgctttag ttaatatagg agattatgta agtgcctcaa
     7381 caactgaact agttagagtt acaaatttaa atcctattta cgcagatttc tttatttcag
     7441 atacagataa gctaaattta gtccgcaata ctcaaagtgg aaaatgggac ttagacagca
     7501 ttcatgcaaa tttaaatctt aatggagaaa ccattcaagg caaactttat tttattgatt
     7561 cggttataga tgctaatagt ggaacagtaa aagccaaagc cgtatttgat aacaacaact
     7621 caacactttt accaggtgct tttgcaacaa ttacttcaga aggttttata caaaaaaatg
     7681 gctttaaagt gcctcaaata gctgttaaac aagatcaaaa tgatgtttat gttcttcttg
     7741 ttaaaaatgg aaaagtagaa aaatcttctg tacatataag ctaccaaaac aatgaatacg
     7801 ccattattga caaaggattg caaaatggcg ataaaatcat tttagataac tttaaaaaaa
     7861 ttcaagttgg tagtgaagtt aaagaaattg gagcacaata atgttttcta aattttttat
     7921 cgaaagacct gtttttgctt cagttgttgc aattatcatt tctttagctg gagtcataag
     7981 tcttacaaat ttacctatag aacaatatcc ttctttaact cctcctacag ttaaagtaag
     8041 tgcaacttac acaggagctg atgcacaaac cattgcttca acagttgcaa gtcctatcga
     8101 agatgcaatc aatggcgcgg ataatatgat ttacatggat tcaacttcaa gttcttcagg
     8161 aactatgagt ttgactgtct attttgatat cggtacagat cctgatcaag ccaccataga
     8221 tgttaataat agaatttcag ccgcaactgc aaaaatgcca gatgcagtta aaaaacttgg
     8281 agtaacagtt agaaaaactt cctcaacaac acttgctgca atttctatgt attcaagtga
     8341 tggttcaatg agtgcagtag atgtatataa ctatatcact ttaaatgtgt tagatgagtt
     8401 aaaaagggtt ccaggagttg gagatgcaaa tgctatagga aatcgtaatt attctttaag
     8461 aatttggctc aagcctgatt tattaaataa atttggaatc acagctactg atgtaatttc
     8521 tgcggttaat gaccaaaatg cccaatacgc aactggtaaa attggcgaag aacctgtaac
     8581 tcaaaaatcc ccttatgttt attcaatcac tatgcaagga agattgcaaa atcctagtga
     8641 atttgaaaac attattttaa gaacaaatga tgatggatca tttttaagac ttaaagatgt
     8701 agctgatgtg gaaataggat cacaacaata cagctcacaa ggacgattaa atggcaatga
     8761 tgcagttccg attatgatca atcttcaatc aggggcaaac gcattgcata cagcagaact
     8821 tgttcaagct aaaatgcaag aactttcaaa aaatttccca aaaggtttaa catataaaat
     8881 tccttacgat acaacaaaat ttgtaataga atcaatcaaa gaagttgtta aaacttttgt
     8941 tgaagcttta attttagtta ttattgttat gtatatgttc ttaaaaaatt tccgtgcaac
     9001 ccttattcct atgatagctg tacctgtttc attgttagga acttttgctg gactttatgt
     9061 tttaggtttt agtattaacc tacttacgct ttttgctttg gttttagcca tagggatcgt
     9121 tgtagatgat gcgatcatag ttgtagaaaa tatcgatagg attttacatg aaaatgaaca
     9181 aataaacgta aaagatgctg ccattcaagc gatgcaagaa gttagctctc cggttatttc
     9241 aattgttctt gtgctttgtg ctgtttttgt accagtttct tttatatcag gttttgttgg
     9301 agaaattcaa agacaatttg ctcttacctt agctatatct gtaactatat caggttttgt
     9361 tgctcttacc ttaacacctt ctttatgcgc actctttttg cgacgtaatg aaggagaacc
     9421 atttaaattt gtaaagaaat ttaatgattt ttttgattgg agcacctctg tatttagcgc
     9481 aggagtagca tatattctaa aaagaaccat tcgttttgtt ttaatttttt gtattatgct
     9541 tggagcgatt ttttatctta ataaagctgt gccaaattct ttagttcccg aagaagatca
     9601 aggtttgatg attagtatta tcaaccttcc ttcagcttca gcactccata gaacaatttc
     9661 agaagttgat cacataagcc aagaagtttt aaaaactaat ggagttaaag atgcaatggc
     9721 tatgatagga tttgatcttt ttacaagttc actcaaagaa aatgccgctg caatgtttat
     9781 aggtttgcaa gactggaaag atagaaatgt aagtgctgat caaattatag ccgaacttaa
     9841 taaaaaattt gcttttgatc gcaatgcttc aagtgtattt ataggcttac ctcctatacc
     9901 tggattgagt atcacaggcg gttttgaaat gtatgttcaa aacaaaagcg gaaaaagcta
     9961 tgatgaaata caaaaagatg taaataaact tgttgctgcg gccaaccaaa gaaaagaact
    10021 atcaagagta agaacaacac ttgatacaac tttccctcaa tacaagctta taattgatag
    10081 agataaatta aaacactaca atcttaacat gcaagatgtt tttaacacga tgaatgcaac
    10141 tataggcact tattatgtta atgatttttc tatgctaggt aaaaacttcc aagtaaatat
    10201 ccgcgcaaaa ggtgatttta gaaatacaca agatgcatta aaaaatattt ttgtaagatc
    10261 aaatgatgga aaaatgatac cacttgattc tttcttaact ttacaaagaa gttcagggcc
    10321 tgatgatgta aaacgattca accttttccc agcggcacaa gttcaaggtc aacccgcacc
    10381 aggttatact tcaggtcaag ctatagaagc gattgctcaa gtagcaaaag aaactttagg
    10441 ggatgattat tccatagctt ggagtggatc agcttatcaa gaagtttcta gtaaaggaac
    10501 agcaagctat gcttttgctt taggtatgat atttgtcttt ttaattctag ctgcccaata
    10561 tgaaagatgg cttatacctt tagcagttgt aacagctgta ccttttgcgg tatttggatc
    10621 atttttattg gtatatttaa ggggatttag caatgacata tattttcaaa caggactttt
    10681 gctcttgatt ggactttcag ctaaaaatgc tatcttaata gtagaatttg caatggaaga
    10741 gcgctttaaa aaaggcaaag gagtttttga agcagctgtt gcagcagcaa aacttcgttt
    10801 tcgtcctatc ataatgactt ctttggcatt tacttttggg gtcttgccaa tgattttcgc
    10861 aacaggagca ggaagtgctt caagacactc tttaggaaca gggcttattg gtggaatgat
    10921 cgcagcatca actttagcga tattctttgt gcctttattt ttctatcttt tagaaaattt
    10981 taatgaatgg ctagataaaa aaagaggtaa ggttcatgaa taaaataatt tcaattagtg
    11041 ctatagcaag ttttactctt ttgatttcag cttgctcttt aagtccaaat ttaaatattc
    11101 ccgaagcaaa ctatagcatt gataataagc ttggagcctt atcttgggaa aaagaaaaca
    11161 atagctctat cacaaaaaat tggtggaaag actttgatga tgaaaattta aataaagtgg
    11221 ttgatttagc acttaaaaat aataatgatt taaaacttgc cttcatacac atggaacaag
    11281 ctgctgctca attaggtata gattttagca gtttgttgcc aaaatttgat ggtagcgcaa
    11341 gcggtagtcg tgcaaaaaca gctataaatg ctccaagcaa tcgaaccggg gaagtaagtt
    11401 acggtaatga ttttaaaatg gggcttaatt taagctatga aatcgatctt tggggaaaat
    11461 atcgcgatac atatcgcgcc tcaaaatcaa gctttaaagc aagtgagtat gattatgaag
    11521 ctgcaagact ttctgttatt tcaaatacag ttcaaactta ttttaatctt gtaaatgctt
    11581 atgaaaatga aaatgctctt aaagaagcct atgaatctgc aaaagaaatt tataggatca
    11641 atgatgaaaa atttcaagtt ggcgctgtag gtgaatatga acttgctcaa gcaagagcca
    11701 acttagaaag tatggcttta caatataatg aagcaaaatt aaataaagaa aattacctta
    11761 aagctttaaa aattttaact tcaaatgatt taaatgacat actttacaaa aatcaaagct
    11821 atcaagtttt taatcttaaa gaatttgaca ttccaactgg aatttcaagc accatcttgc
    11881 ttcaacgtcc agatattggc tcttctttag aaaaattaac tcagcaaaat tatcttgttg
    11941 gagtagctcg cacggctttc ttacctagcc tttctttaac aggattattg ggatttgaaa
    12001 gtggggattt agataccttg gttaaaggag gttctaagac ttggaatata ggtggaaact
    12061 ttactctgcc tatttttcat tggggtgaaa tttaccaaaa tgtaaattta gctaaactta
    12121 ataaagatga agcttttgta aattatcaaa atactttgat tactgctttt ggagaaattc
    12181 gctatgcttt agtagctaga aaaactatac gcttacaata cgataatgca caagcaagcg
    12241 aacaatctta taaaagaatc tatgaaattg ctaaagaacg ctatgatata ggagaaatgt
    12301 ctttgcaaga ttatttagag gcacgtcaaa attggcttaa tgctgcggtt gcttttaata
    12361 atactaaata ttcttatgcc aattccatag tagatgtaat caaagcattt ggtggaggat
    12421 ttgagcaaag tgaagatacg agtaaaaata taaaagaaga atcaaaaaat ttagatatgt
    12481 cttttagaga atagtttgtt ctattctcta aataaatcaa aaatctttgt ctaaatctgc
    12541 atctgtaatt tcataagcct tgtaaatagc aggcaataat tttcttatag cataatcaaa
    12601 atgataaaat tgcttatata cctcttctgg atttaaattt ttagcattct taaaatcaaa
    12661 tacttcagta ttattgattt tggcaatatt ttcatcaaaa taagagtaaa actctgctct
    12721 ttgtttaaac aaagcattta aattttgaac aattttggct ttatccattt tatatccttt
    12781 ttaaataatt taaaaactta atcccatttt ttatttaaga aataaaaaat ttactcctat
    12841 tttagctaaa aattgataaa gttatgtctt aaatatttta atatataggc cacttatgaa
    12901 tttatttcaa aatttagctt taaaatactc tcatactatg atggaaaaat ccctccaaaa
    12961 aggtttcaat gtcgaacttt taaaacaacc caaagaaaaa attccaaaac aagacaaaag
    13021 ctatatgctt tatgcccatg tacctttttg ccatactttt tgtccttatt gtagttttca
    13081 taaatactat
//
LOCUS       DAEBKH010000035        12781 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.035, whole genome shotgun sequence.
ACCESSION   DAEBKH010000035 DAEBKH010000000
VERSION     DAEBKH010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12781)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12781)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12781
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.035"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..462)
                     /gene="pglA"
                     /locus_tag="KIL20_000702"
     CDS             complement(<1..462)
                     /gene="pglA"
                     /locus_tag="KIL20_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HBD2720744.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDLIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINNLYKLSFKFAHQFIFVNESN"
     gene            complement(472..2613)
                     /gene="pglB"
                     /locus_tag="KIL20_000703"
     CDS             complement(472..2613)
                     /gene="pglB"
                     /locus_tag="KIL20_000703"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HBD2720745.1"
                     /translation="MLKKEYLKNPYLVLFAMIILAYVFSVFCRFYWVWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSALTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPTILLANEYKRPLMGFVAALLASIANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSAIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDLSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAIMVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFALSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKTDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            complement(2617..3714)
                     /gene="pglJ"
                     /locus_tag="KIL20_000704"
     CDS             complement(2617..3714)
                     /gene="pglJ"
                     /locus_tag="KIL20_000704"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HBD2720746.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALM
                     ARMFGNKTRLVINECTTPSVMYAKNNFNSLANKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSINPKKCEILYNAIDLENIEQKALEDVALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTDLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            complement(3702..4631)
                     /gene="pglI"
                     /locus_tag="KIL20_000705"
     CDS             complement(3702..4631)
                     /gene="pglI"
                     /locus_tag="KIL20_000705"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HBD2720747.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENKRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAHR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            complement(4624..5703)
                     /gene="pglH"
                     /locus_tag="KIL20_000706"
     CDS             complement(4624..5703)
                     /gene="pglH"
                     /locus_tag="KIL20_000706"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HBD2720748.1"
                     /translation="MMKISFIIATLNSGGAERVLVTLANALCKEHEVSIIKFHTGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKADVFISFLDTTNIACI
                     LANIGLKTPLIISEHSNEAYLKPKTWRFLRRVSYPFCDALSVLGSSDKVYYERFVKRV
                     KLLLNPCHFSDEIPFDSSFEKENLVLFIGRLDHNKNPVMFLKAIAHLDKNLQENYKFV
                     IAGDGELRQELEYKVKSLGIKVDFLGRVENVKALYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLVGCDDEIALAKKLELVLNDENFRKELVNNAK
                     QRCKDFEISNIKEEWLKLIVEVKNA"
     gene            complement(5700..7394)
                     /gene="pglK"
                     /locus_tag="KIL20_000707"
     CDS             complement(5700..7394)
                     /gene="pglK"
                     /locus_tag="KIL20_000707"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HBD2720749.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFVSFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHAIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGLRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLNIIYQNLRQE
                     EENLGEGKLSFNQELKICNLSFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDKQELNASNAKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNKVIKQANLEHFIKNLPQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEILVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            complement(7388..8374)
                     /gene="galE"
                     /locus_tag="KIL20_000708"
     CDS             complement(7388..8374)
                     /gene="galE"
                     /locus_tag="KIL20_000708"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HBD2720750.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKIRTFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRNKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLSALDYLKENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLGLICKSAFDWEKQC"
     gene            complement(8433..9227)
                     /locus_tag="KIL20_000709"
     CDS             complement(8433..9227)
                     /locus_tag="KIL20_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HBD2720751.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIANFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFCENELEKIHEYCESDVLNTYMLFLKYELI
                     KANVSEEDYIDFLSYMRDFLRAKKSDRSYTEVFAKACESEISKVQS"
     gene            9293..10321
                     /gene="waaC"
                     /locus_tag="KIL20_000710"
     CDS             9293..10321
                     /gene="waaC"
                     /locus_tag="KIL20_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HBD2720752.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKILKSLKILLKARKNNYNAVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQAKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFNLEELMAFTKMMDLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDAGKKIQNTKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            10311..11189
                     /gene="htrB"
                     /locus_tag="KIL20_000711"
     CDS             10311..11189
                     /gene="htrB"
                     /locus_tag="KIL20_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HBD2720753.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPECILHFLALIVARITFYLNKK
                     HRKIIDTNLQICFPQYTQKERDKLSLKIYENFTQFGIDCLQNQNTTKEKILNKVNFIN
                     ENFLIDALALKRPIIFTTAHYGNWEILSLAYAAKYGAISIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKERALGILTDQDCVENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEDGKFCIEFFKAKDSQNANLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNQGIYS"
     gene            11186..11887
                     /locus_tag="KIL20_000712"
     CDS             11186..11887
                     /locus_tag="KIL20_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HBD2720754.1"
                     /translation="MNISIVILTFNSQKYLQEVLQSVNFANEIILIDSGSTDDSLIIA
                     KAFKNIKIFHQDWLGFGKQKQFGVEKATNDWIFVLDSDEVFTEELKEEVLQIIKNPSF
                     KAYKVARLNFFFGEAITKMGLYPDYNIRLFHKKYAKFNEKEVHESIICQEKIGKLKHH
                     FLHYAYENIEQFIDKQNKYSSLNPKKNNLLKALINPYWTFFKLYFVKLGFLEGKRGFI
                     IAKLYAQYTFWKYIK"
     gene            11898..12776
                     /gene="rfbA"
                     /locus_tag="KIL20_000713"
     CDS             11898..12776
                     /gene="rfbA"
                     /locus_tag="KIL20_000713"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HBD2720755.1"
                     /translation="MKGIILAGGSGTRLYPSTLTLCKQLLPIYDKPMIYYPMSVLMLA
                     KIKEVLIISTPKDIDRFKELFKDGSFLGMQIQYKIQERPEGLAQGLILAQDFIQNDDI
                     ALILGDNIFYGQGFSDILENAKDDLKKGFASIFSYHVKDPERFGVVEMDQNGNVLSLE
                     EKPKNPKSNYVATGLYFYNNDAIDIAKNIKPSARGELEITDVNIEYLRLNKLKSQHLG
                     RGFAWIDTGTHDSLIEASSFVQTIELRQGYKIACLEEIAYNNNWIDNETLEKRALLLS
                     KSNYGQYLYKILSQGK"
BASE COUNT         4771 a         2179 c         1595 g         4236 t
ORIGIN      
        1 attactttca ttgacaaaaa taaattggtg tgcaaattta aaacttaatt tataaagatt
       61 attaataaca aaacgtacta aatttgcctt aaaaccttga tctatataaa aagatcccaa
      121 gccttctacc aaagcaaaac gataaggaat ttttgcccat tttgccgcta aaattccaaa
      181 ggtattgctt ttgtgtgccg cactttgaat aagatcaaga tttaaatttt ttaaaacctt
      241 agcaagataa aaaaaattct ttaaaactac aaaaggattt aaactagctc ttgaaaactc
      301 ataaacaatt acttttaaac caagatctct aagtttttgc gtgtattcat cttgcggcac
      361 tataacaaaa acttcatctt ttctatcttt taatgctttt ataataggca ttctaaaatg
      421 ataaatactt gctcctgcat gtgataaaaa tcctattctc attttcaacc cttaaatttt
      481 aagtttaaaa accttagcat ctctagaatt aatcaccaag tcaaataaat tcttatcata
      541 atttcctaaa aaaaacattt gcacataagc actattaaac atggttttat ccattaaaat
      601 aaattgtgcg taaggaatag cactatcctt taaataaaaa atataaaact gagccttatc
      661 atcaattgga gtgattttgt attcaccttg tttaatagaa ttaatctcta cgatactatt
      721 tacagaaacc acattatcac ctattttaaa acttctaaaa tcatcgctta aaaccactcc
      781 gttgctaaga taaatttctc catttttaac atcaagtgga taagctgtgc taaaggtaaa
      841 aggtttatcc aaaactcctg tatctaaatt aataaaagaa aaactagcca ccgtagaaaa
      901 aatcaaagac attctagcgg gcatataaag ataaatatca cgagtttttg gcgtatcgat
      961 tttaaaatca ggttttgata atgaagctag aaacaaatcc acattgcttt gattataatc
     1021 tttcatcatg gcttgcaaaa tgtctgtttt taaaatatca ttttgcggag cataaaagct
     1081 tttttctgta tattctacac taagtcttgc catattagct gcagcttgtt catctttgct
     1141 taaagcaaaa gaagggaaaa aattatcctt acctaaatgc tttccaccat ctactaaagt
     1201 tttcacatcg ctataataac gcacaggata accataatcc caccaagtta ccacataatc
     1261 ttctctattg gctatatttt ttaattgatt taataatgat gcttcatttt gagaaaaaac
     1321 tgttggcgct ttatagttgt aaatatggat aaatactgga gctaaagtca aaatagttgc
     1381 aaaaacaata caaacatttg aagttaattg gctatatttt ttaaccatta tagccttaaa
     1441 ctcgctcaat aaaaaaccaa atcctaaggc cattacaggt acagaataaa tggtaaatct
     1501 aagcccccct tttaaggcta aaaacccaag caccaatata ggtaaagcca taatcatact
     1561 tttatgtttt ctcaaaagcc atacaaaacc aaacaaagaa aacaaaaaaa caatttcact
     1621 accactaatt cttcgcataa attcgctaag atctacattt tcaacttctt gtatggtttg
     1681 attgacatta aaatacataa agccctgcgt taaattcgca ctttcatcac ttctaaaaat
     1741 ataaaattta agctgataaa gtataggatc aaccccacca cttaaaatca aaaatatcaa
     1801 agttgcacta cctaaaattc ctataatcat aaaatttaag cgtttttgct ctaaggcgaa
     1861 taaagcaaaa agtattacta taatggcact ttgataaaac catgctatat ttgaaagagt
     1921 aagagaagac aaaatcacag ctatataaaa aatcttttct tttctatgaa aaataagtgt
     1981 ataaattaaa aaaagtccaa ttaaagctac atttaaagta taacttgaag gataccacca
     2041 aagataaatt cctataaata acggcaaggc aatcaatgaa aaaaagtctt tttttaaaat
     2101 cattcttacc ataaaaaata aaataaacat aggcaaaaca attaccagca tatccgtatc
     2161 ataataccca ctcatagtgc gattataata actgtttgct atacttgcta aaagagcagc
     2221 tacaaagccc attaaaggac gtttgtattc gttagctagc aaaatagtag gaatcaccac
     2281 caaagaagat aaaaaagtac tcatatataa aatgatactt tcaaaagaaa aaggtgtgat
     2341 tttataaagc caataagtaa gcgcggataa agaagatcca taataactca aatcattagg
     2401 ctgatgaaaa cctgctatca tatctcttgc gccctcagca aaagcatagc catcatttga
     2461 aatgatcatt aactgattat tgaaaaaata ctcattaaac tcacttgccc accaaaccca
     2521 ataaaacctg caaaatacac taaaaacata agctaatata atcatcgcaa acaaaactaa
     2581 ataagggttt tttaaatact cttttttcaa catcttttat cctaataaat atttcaaagc
     2641 atcgcgtgca atttttactt tatcaaaagc tttagcccta gttttagcct tatttttata
     2701 cgcttttctt aatttatcgt cttcaagcat agtctttaaa ccctgaaaca tggagttttc
     2761 attatctact tctactaaaa gtccaaattc atcatcgcca aaaagctctc ttgcgccact
     2821 tttatgatca gtgcaaacca ccgcacaaga acaagctaag ctttcaatta aaacatttga
     2881 aaagccttca aatacagaag caaaagcaaa aaattcgcat ttagccatgt atttataagg
     2941 attattatca aatcctaaaa gcaaaacctt ttcttctaaa tttaactctt taatcaaagc
     3001 taaaagctca tctttaagca caccttcacc taaaatcaca agctttaaat ctgttttcaa
     3061 tcttgcataa gcacgaatta ataaagcatg atttttacct ttatcaagcc tgcctacact
     3121 taaaataaat ttatctttta aagctacatc ttcaagagct ttttgctcta tattttctaa
     3181 atcgatggca ttgtataaaa tttcacattt ttttggattt atactaaaat tttgcactaa
     3241 atcttctaaa tttcccttag aattaggcaa gattaaatca gcttttgggt aaagcaaaga
     3301 aattaaaaat ttatttgcca aagaattaaa attatttttc gcatacatca cacttggcgt
     3361 agtgcattca ttgatcacaa ggcgagtttt gtttccaaac attcttgcca ttaaggctat
     3421 ataattaggt cgatttaaaa aaacaaattc tgtatcaatg cctaaatttc tgcaaagttt
     3481 tttatatttt aaagccaaaa aaggtagttt taaaaatttc aaaataggat tttcactagg
     3541 ttttgaacat tctaaaaaat gaatttgaca ctctggaatt tcataagaaa ttttatcatt
     3601 cattaaaatc aaatgcactt caaatttcaa acttaaaata ggcaataaag tcgccacaac
     3661 tctttcagca ccaccacttc ctaaagaata aataaaaatg cctaattttt gcataaagcc
     3721 acccgaattt ttgataattt ttcaatcata ttatttggaa ttatacttaa aatgagtaat
     3781 atcaaagcag gagcgttgat ttttatactc aggcttttaa acaaacactt ataaagagct
     3841 ttataatttt ttgcaagttt tgcataataa gctgccattt tataataact cgcacaagtt
     3901 tttttataat ctttatcctt actcattcta agttcatttt ctaaaatttt agcaagctct
     3961 aaatatccca aatacaccct atgagcattt ttactcgccc ctaaagtcac gctatcttgc
     4021 ctaaaaatcc tataaatcct aaaagcctta tggatataaa aacttttttc cttgtataaa
     4081 tttacccaaa gcgtggcttc attgccataa aattcttcat taaaacgctt gttttcaagt
     4141 agagattttt taaaaacaga aaaaaactct ccgctaaatt tagccattaa aaaatctttt
     4201 ttagaaattt cactatcttt ttccaagccc ttaccgctaa attccttgct taaatttcct
     4261 tctttttcta tcaaacaatt tccaaaaaca tgagcataac cctcatttgc tttttgcatc
     4321 aaggtactta aagccccaga taaaagctca tcatcatcat ctaaaaaagt tacaaactcg
     4381 ccacttgctt gatctaagcc attgttttta ttgccatttg ggccttgttt gtaattttga
     4441 tttaaaaaat acttaatgcg atcatcatct ttttgtaaat tttgcaccac acttttagta
     4501 tcatcactag aattatcatc gcttacaatg atttctaaat ctttaaaatc ttgattttgt
     4561 atgcttttaa tagccttttc taacaaaact tgacgattaa aagttggcac tataacagaa
     4621 agtttaggca tttttaacct cgactataag cttaagccat tcttctttga tgttagaaat
     4681 ttcaaagtct ttacaccttt gtttggcatt atttacaagt tcttttctaa aattttcatc
     4741 atttaaaaca agttcaagtt ttttagcaag tgctatttca tcatcacaac ctaccaaaag
     4801 cccatcatga ttatctttga ttaaatcctt agcaccatta taataagaac ttgaaattct
     4861 acaaacctca aaatacaaac tttcaattaa aaccgttggc aaaccctcta caaaagaaca
     4921 aaggcaaagc acttttgctt tttcataaag agccttgaca ttttcaacgc gtcctaaaaa
     4981 atcaactttt attcctaaag attttacctt gtattcaagt tcttgcctta actctccatc
     5041 tcctgctata acaaatttat aattttcttg caaattttta tccaaatgtg ctatagcttt
     5101 taaaaacatt acagggtttt tgttgtgatc taaacgccct ataaaaagaa ccaaattttc
     5161 tttttcaaaa ctagaatcaa aaggaatttc atcgctaaaa tgacaagggt ttaataaaag
     5221 cttaaccctt tttacaaatc tttcataata caccttatca ctgcttccaa gcacacttaa
     5281 agcatcacaa aaaggatagc ttacccttct taaaaaacgc caagttttag gttttaaata
     5341 cgcttcatta ctatgctcgc taatgatgag tggagtttta agtcctatat tagctagaat
     5401 acaagcaata ttagttgtat ccaaaaaaga aataaaaaca tcagccttac tttcttttaa
     5461 agcctttctt aaggcaaaaa atttcttaaa acgacttgcg attttatgat aaagcgtgtc
     5521 aaatctaaat tgttctaaac ttgtaacttt aacttcattt tcaagcttat aaaaagattc
     5581 tcctgtatga aatttaataa tacttacttc atgctctttg caaagcgcat tagctaaggt
     5641 tactaaaaca cgctcagcgc ctcctgaatt taaagttgcg ataataaagc ttattttcat
     5701 catttctcct ctttaagctt accgtgttct aaacgataaa ccttatcaca ttgcgttatc
     5761 gtagaaaggc gatgtgcgat aataatcatg gttttatctt tagaaatttt ataaatttca
     5821 tccatgattt ttgcttcact ttgagtatca agcgcagaag ttgcttcatc aagcactaaa
     5881 atttcaggct ctaaatacaa agcccttgct atagctatgc gttgtttttg tcccccgctt
     5941 aaattactcc ccccatcgcc tacttttgtc tgaactcctt gaggtaaatt ttttataaaa
     6001 tgctctaaat ttgcttgttt gataacctta ttaagttttt cttcatcaac cgcatctcca
     6061 aaagtgatat ttttagctat gctatcatta aaaagataga tattttgcgg gatatagcct
     6121 attttttggc gataattttt tgcattactt gcatttaatt cttgcttatc aattaaaatt
     6181 tgcccttctt ttggttttaa aagtcctatg ataagatcta ctaaggtact ttttccacaa
     6241 ccactctccc ctataaaagc gattttttca ccttttttaa tgtttaaatt aagattttta
     6301 aataaatatt tttttccctc ataaccaaag ctaagattgc aaattttaag ctcttgatta
     6361 aaacttaatt ttccctcgcc caaattttct tcttcttgtc ttaaattttg ataaataata
     6421 ttcaaagaag aatgataata aagcaaatca tgataacttg tgataatacg atttgcgctt
     6481 ggcattaagc gataaagcgc taaaacaaaa atagaaatcg tggataaaat acctgaaata
     6541 tcactttcat ttttcaaaac caaaaatacc acgataaaaa caagcacaca aaagcctatt
     6601 ccttcaagat aaattctagg caccgcagct acgctttcat tggtaatatt tgctttagaa
     6661 aaagcttcac tttgtgcttt aaaaagactt aatactccat cttctttggt tttaagcttg
     6721 ataaatttaa aattatttaa atttgtattt aaaatttcga agaaattttt catcgcttct
     6781 tcgcgtctta gtcctgcttt tttaatgata gggcttaaaa ttttcactaa aataaaagca
     6841 tttaacacca taaaaatact taaaaataaa gtgattttat aattaatcaa aagcattaaa
     6901 gcataaagca aaagcactac aaaaatttca ctcatcaaaa gtaaaaatga tgaaatcata
     6961 gtgcttagat tataaacttc ccctgtaatg gactttaaaa tttcagattg atttttttga
     7021 gtaaattttt cataattaat atttaaaaat ttagaaaaaa ccttataagc gatcgcatga
     7081 taacgtcctt tagaaaatct tgccaaaaga tgaaaataat acgcatttaa caaagctcta
     7141 aatacataaa aaacaataag ccccactcca aaataaacaa tgatttcaaa aacagggata
     7201 ttaagatatt cttttaggct gattaaatat ttattacgat caaaataaga aaaatcacta
     7261 gccaaagtga taaaaggcat taccaaagaa atcgcaaaag tttctataaa agaaacaaat
     7321 actgaaaaaa caagcaagaa aaataaaaaa tttttatctt ccttgcttaa aataaaaaaa
     7381 agttttttta gcactgtttt tcccaatcaa aagcagattt acaaataagc cctaaatcat
     7441 catatttagg ctgccaagaa gtaagatttc tgattttact tgcatcagaa atcaatacac
     7501 taggatcacc cgcacggcgt ggggcaagtt ctactttaaa atccactccg ctaacttttt
     7561 tcatcgcttc aatcacttct tttacgctaa aaccatgtcc ataacctaca ttaaaaacat
     7621 tgctttcatt ctcttttaaa taatccaaag ccgataaatg cgcacttgaa atatcatcca
     7681 catggataaa atctcttatg caagtgccat cttttgtatc ataatcatcg ccaaatatga
     7741 aaagtttatt acgttttcct gcggcacatt cagctgcaac ttttataagc aaagtcgctt
     7801 ttggatagcg ttgtcctaaa gtataatcca tgcaagcacc tgcaacatta aaatatctta
     7861 aaatacaatg cttaaattca ggatttgcca tacttgcatc acgcaaaacc tcttcgctca
     7921 taagcttact acgcccataa ggattaatag gtgctaaagg acttgtttcg ctcacaacgg
     7981 gagtttgtgg ttcgccataa gtggctgccg ttgaagaaaa tataaattta ttcactccag
     8041 tttgcaaaca agtttcgatg agatttgtcg tattaacagt gttattcata taatacttta
     8101 aagggttttg catactttca aaaacttcaa tgctcgctgc aaaatgcaca atagcgtcaa
     8161 atttttctct ctcaaacaat gcttttacgc cttgaaaatc acttaaatct tgttcaaaaa
     8221 atttaaaagt tcttattttt tgcaaatctt ctattgcgat tttagaaccc ttagaaagat
     8281 tatctaaaac acaaatttca tgatctgttt ttaaaaattg tcttaaagta tgagaaccta
     8341 tataacctgc accaccgcta ataagaattt tcatcatcat tcctttttct aaaaaatatc
     8401 aaaaataaat tttaatatat tttcttaaat acttaagatt gaacttttga aatttcactc
     8461 tcacaagctt ttgcaaaaac ttctgtatag gaacgatctg atttttttgc acgcaaaaaa
     8521 tctctcatat aagaaagaaa atcaatataa tcttcttcac taacattagc tttaataagt
     8581 tcatatttta aaaaaagcat ataagtattt aaaacatcac tttcacaata ttcgtgaatt
     8641 ttttcaagtt cattttcaca aaaaagtttc atcacctcat cgccatgcac atcatatttt
     8701 cctggtaaac ccaccataga acaaagtgta tcaagcttta ttccacgccc attagatcct
     8761 aaggattcta ataaatcgca atgttttaat tctgaaaatc ttgttttata attattccat
     8821 ttatcgcttt gagtatctaa ataagttgct gcttttaaat tgtattttaa agcccttaaa
     8881 acaagaacag gcatatcgaa atttttacca ttaaagctga ctaattttgg ctcataattt
     8941 tctataaaat taaaaaaatt agcaatcatt tctttttcat tttgcccatc aattttattt
     9001 actttgataa attttccaaa attatcactt aaaaccgcac aaatactgat gattttatga
     9061 taaggcaaag gcaaaaactc actcccactt tgttcttttt gccactgaag tgcttttaaa
     9121 cttacctcca aatcacttcc ttcaaaaccc aaagttttgc gaataagctc aacatctggt
     9181 acactctcgc aatcaaaaac acaaatataa ccttcatttt ttgccatttt taaccttttt
     9241 ttaaataatt tcgctaaaat catagcaaaa attttaaaat attaggcttt taatgaaaat
     9301 agcaattgtt cgtttatcag cacttggtga tattatccaa agtgccgtgg ttttgcaatt
     9361 tatcaaaaat tttaaaaaag atatagaaat tcattggttt gtagatgaaa aatttgaagg
     9421 catacttaaa aaccatcctt taatagacaa actctatgcc ctacccttaa aagacaaaaa
     9481 aattttaaaa agcctaaaaa ttcttcttaa agcaagaaaa aacaactata atgcagtaat
     9541 agatctacaa gggcttataa aatctgctat tgtaagtcga attttaagta gaaataattt
     9601 tggttttgat aaaaacagcc ttaaagaaag ttttgctcat aatttctaca accaaaaact
     9661 tgagttagat tacaatgaaa atgtatttgt aagatactta agtcttacct cctttatgtt
     9721 aaatactgat tttaatgtca aaaatttagc ctttaaacaa gatattttta gcgtagatga
     9781 aaatttaaaa caactcttaa acaataaact caagctcgac aaaaacgaaa aaaacatact
     9841 catacacgta ggttcaagtg tagaaaataa aatctatcct aaaaccaaac ttgctatact
     9901 ttgcaaactt ttaatcaatg aatttcaaca agcaaaaatt tggctcgctt ggggaaatgt
     9961 aaaagaatac gaatttgcta aagaggtttt aaatcttagt ggtattgatg aaacacatat
    10021 agaattagcg ccaaaattca atcttgaaga actaatggct tttacaaaaa tgatggatct
    10081 tatcatagga aatgatagcg gcccaacaca tttggctttt gctttaaata aggcatctat
    10141 tacgattttt ggtgcaacac caagctaccg caatgctttt caaactcata tcaataaaat
    10201 cattgatgca ggtaaaaaaa tccaaaatac caagcatatc gataaaagtg atttttgtat
    10261 cacgcgtata gaagaagaag atatcttcaa acttgccaaa ggcttactta atgaaaaata
    10321 gtgatagaat atatcttagt ctttattata ttttgaaatt ttttgttact tttatgcctg
    10381 agtgtatctt gcatttttta gctttgattg tagcaagaat cactttttat cttaacaaaa
    10441 aacatcgcaa gatcatcgat acaaatttgc aaatctgctt ccctcaatac actcaaaaag
    10501 aacgcgataa actatctttg aaaatttatg aaaattttac tcaatttgga attgattgtt
    10561 tacaaaatca aaacaccacc aaagaaaaaa ttctcaataa agtaaatttt atcaatgaaa
    10621 attttcttat agacgctcta gctttaaagc gtcctattat cttcacaact gcacactatg
    10681 gaaactggga aattttaagc cttgcttatg cagctaaata tggtgcgatt tccatagtgg
    10741 gaaaaaagtt aaaaagtgaa attatgtatg aaattttaag ccaaagtcgt actcaatttg
    10801 acatagagct tattgacaaa aaaggcggta taagacaaat gctaagcgct ctaaaaaagg
    10861 agcgagcttt gggaatttta actgatcaag actgcgtaga aaacgaaagc gtaagattaa
    10921 aattttttaa caaagaagtg aattatcaaa tgggagcaag ccttatcgca caaagaagca
    10981 atgctttgat catccctgtt tatgcctata aagaagatgg taaattttgc atagagtttt
    11041 ttaaagcaaa agattctcaa aatgcaaact tagaagaact gacactttat caagcacaaa
    11101 gttgcgaaga aatgattaaa aaaagacctt gggaatactt ttttttccat agacgctttg
    11161 caagttataa tcaaggaata tactcatgaa tatttcaata gtaatactaa cttttaatag
    11221 ccaaaaatat cttcaagaag tattgcaaag tgttaatttt gccaatgaaa ttattttaat
    11281 agatagcgga agcacagatg atagtctaat aatagcaaaa gcttttaaaa acatcaaaat
    11341 ttttcatcaa gattggcttg gttttggaaa gcaaaaacaa tttggagttg aaaaagcaac
    11401 taatgattgg atatttgttt tagatagtga tgaagttttt actgaagaat taaaagagga
    11461 agtattgcaa ataattaaaa atccatcatt taaagcatac aaagtagcaa gattaaattt
    11521 tttctttgga gaagcaataa caaaaatggg gctatatcct gattataaca taagactatt
    11581 tcataaaaaa tatgccaaat ttaatgaaaa agaagttcac gaaagcataa tctgtcaaga
    11641 aaaaataggg aaattaaaac atcatttttt acattatgct tatgaaaata tcgagcaatt
    11701 tatagataaa caaaacaaat actcaagtct aaatcctaaa aaaaataacc ttcttaaagc
    11761 tttaataaat ccttattgga ctttttttaa actttatttt gtaaaattag gttttttaga
    11821 aggcaaaaga ggttttatca tagcaaagct ttatgcacaa tatacttttt ggaaatatat
    11881 taaataggag tgcaacaatg aaaggcatta ttttagctgg aggtagtgga actagacttt
    11941 atcctagcac attaacttta tgcaagcaac ttttacctat atacgataaa ccaatgattt
    12001 attatcctat gtctgtttta atgcttgcaa aaattaaaga agttttgatt atttctactc
    12061 caaaagatat tgatagattt aaagagctat tcaaagatgg ttcttttctt ggaatgcaaa
    12121 ttcagtataa aattcaagag cgtccagaag gtttagcgca aggacttatt ttggcgcaag
    12181 attttattca aaatgatgat attgcattaa ttttaggaga taatattttt tacggacaag
    12241 gctttagtga tattttggaa aatgcaaaag atgacttaaa aaaagggttt gctagtattt
    12301 tttcttatca tgtaaaagat ccagaaagat ttggagtggt agaaatggat caaaatggaa
    12361 atgttttaag cctagaagaa aaacccaaaa atccaaaaag caactatgtg gcaactggtt
    12421 tatattttta taataatgac gctatagata ttgcaaaaaa tataaaacca agtgcaagag
    12481 gagaacttga aataacagat gtaaatatag aatatttaag gttaaataag ctaaaatcac
    12541 aacatttagg aagaggtttt gcttggattg acacaggaac tcacgatagt cttatagaag
    12601 ctagttcgtt tgtgcaaacc atagaattaa ggcagggtta taagattgcc tgcttagaag
    12661 aaatagccta caataacaac tggatagata atgaaaccct agaaaaaaga gcattgttac
    12721 tttcaaaaag taattatggt caatatttat ataaaatact tagtcaagga aaataatgta
    12781 t
//
LOCUS       DAEBKH010000036        12432 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.036, whole genome shotgun sequence.
ACCESSION   DAEBKH010000036 DAEBKH010000000
VERSION     DAEBKH010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12432
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.036"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            6..662
                     /gene="flgA"
                     /locus_tag="KIL20_000714"
     CDS             6..662
                     /gene="flgA"
                     /locus_tag="KIL20_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HBD2720756.1"
                     /translation="MIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQIDLK
                     ITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLKSE
                     RTIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKTTA
                     LIRRNDPIIGVLSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMIIQ
                     "
     gene            659..1222
                     /locus_tag="KIL20_000715"
     CDS             659..1222
                     /locus_tag="KIL20_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HBD2720757.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLSFKAE
                     NEVNLEEICQENFKYTHFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIVGKWLDLLEIKHNLYEKWQNF"
     gene            1262..1738
                     /gene="coaD"
                     /locus_tag="KIL20_000716"
     CDS             1262..1738
                     /gene="coaD"
                     /locus_tag="KIL20_000716"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HBD2720758.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            1729..2307
                     /locus_tag="KIL20_000717"
     CDS             1729..2307
                     /locus_tag="KIL20_000717"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HBD2720759.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPISKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDL
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISIEILTLDAKESKEKLHQQIKEFLQ"
     gene            2304..3530
                     /locus_tag="KIL20_000718"
     CDS             2304..3530
                     /locus_tag="KIL20_000718"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HBD2720760.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKTCEEVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYHGSMFRYERPQKGRLREFHQFGVESFGNASVYEDASIILMLVEIFSRLDIKFKLL
                     INSLGCLKCMPKYRENLIHFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQSLLNDAP
                     LLNQNLCSSCQKDFEILQSVLKENGVDFEVDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLDGKSGFGVGFAMGIERIIAILEQKEEKVQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEHKVLLSYEARKLAKHLENADKNNAEIFLCMGENEAQNESLFYKNLV
                     KKEEKMIKISDLKKVL"
     gene            3527..5362
                     /gene="speA"
                     /locus_tag="KIL20_000719"
     CDS             3527..5362
                     /gene="speA"
                     /locus_tag="KIL20_000719"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HBD2720761.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINHEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSI
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDALEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            5363..6001
                     /gene="cysE"
                     /locus_tag="KIL20_000720"
     CDS             5363..6001
                     /gene="cysE"
                     /locus_tag="KIL20_000720"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HBD2720762.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRVFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGAKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
     gene            6174..7343
                     /locus_tag="KIL20_000721"
     CDS             6174..7343
                     /locus_tag="KIL20_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HBD2720763.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QIIKNAAISAIEKGCGKYTAVAGIPEVLKAIQIKFKKDNNLDYETSEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFVEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSEDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDKDIEKMRQAFEKRRNLALDILKQIPNISVYKPEGAFYLFVNIQKIEK
                     DSMNFCQKLLEQEKVAVVPGVGFGMDGYFRLSYATSDELIKKGLERIANFIKNYK"
     gene            complement(7393..7734)
                     /locus_tag="KIL20_000722"
     CDS             complement(7393..7734)
                     /locus_tag="KIL20_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HBD2720764.1"
                     /translation="MKIIQWNRAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNVLDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
     gene            complement(7804..8826)
                     /locus_tag="KIL20_000723"
     CDS             complement(7804..8826)
                     /locus_tag="KIL20_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HBD2720765.1"
                     /translation="MNLSFKTFDISNVQRSKAKKVQGKKYEIFLNENEQSLITPKVSF
                     KEILRYYYLYPKNAIPSFKLPFFKPDLSGFSTPHITWLGHSSLFISFKEYKILIDPVF
                     NTHASPISFINKAFKNTPVYNVNDFNEIFAVIITHSHFDHLDAKSIKALKEKARFFIT
                     PLKVGNYLKSYGVSEKKIIELDWWSGVEFGDLKIIATPAQHSSSRGDGKNKTLWASFV
                     MEFLSVDKRVFFSADGGYFTHFKKIGEYFGSFDLACLESGQFNIAWPYSHSFPDQILK
                     EAKDLNAKAVMPIHWGRFLVGTHAWNEVIKFLYENLDLPLITPKMGEAYEIGAKFKQD
                     FWWKEG"
     gene            complement(9179..11050)
                     /gene="dnaK"
                     /locus_tag="KIL20_000724"
     CDS             complement(9179..11050)
                     /gene="dnaK"
                     /locus_tag="KIL20_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HBD2720766.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVVDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLANEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIESKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
     gene            complement(11073..11603)
                     /gene="grpE"
                     /locus_tag="KIL20_000725"
     CDS             complement(11073..11603)
                     /gene="grpE"
                     /locus_tag="KIL20_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HBD2720767.1"
                     /translation="MSEQKQEFENENAENSEHLQDENLQNIEDVEQNRLQKDYDELKD
                     KYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAINVECHDEISLKI
                     KEGVQNTLDLFLKKLEKHGVALIKEEKEFDPNLHEAMFHVDSQNHQSGEVVTVLQKGY
                     KIADRVIRPTKVSVAK"
     gene            complement(11600..12391)
                     /locus_tag="KIL20_000726"
     CDS             complement(11600..12391)
                     /locus_tag="KIL20_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HBD2720768.1"
                     /translation="MKSRDKKDLILDSIIQTYLLDNVPIGSNELNLNLCIPASTIRVY
                     LKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWKKEQDQDINIKSENFLKELSKEFE
                     IYCLVYGGRSLVLKEVLDLNAKFIVLDFKEEELVLKYEKEAWNFLQSLIGLDLFSIEK
                     IALRVHFMDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCGVHRYFKESLEF
                     EPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
BASE COUNT         4316 a         2015 c         1908 g         4193 t
ORIGIN      
        1 tgaaaattat ttttttaact ttttttattg tgataaatta tatccaagca gctagtttag
       61 aagaaatcaa aacagcacta gctaaagaat ttagaaataa ttttcctaaa attataattt
      121 ctcaaattga tttaaaaata acatcattgc ctaaagattt tgatcaatat gaatttctaa
      181 gaatcgctaa tggacgtttt aatcaagcac aaggcttttt aagggctgaa tttaaaactc
      241 cgcaaaatat acaaaaaaat gtatttttta gatatttcat tcaagcaaat ttagaagttt
      301 taaaaagcga acgcactata aaaagaggag ataaacttgg agcttttgac tataaaagcg
      361 tattgattga ttttgataaa gttcctttaa atgccttaac cttagatgat gtagataatc
      421 ttgtagctaa aagcaatatt aacaaaaacg ctattttaag agcaaatatg tttaaaacca
      481 cagctttaat acgccgaaat gatcctataa tcggggtttt aagcgaagca aatgttgatg
      541 ttttaatcga acttgtggct ttgcaaagtg caaatatggg cgaaaggatt cgtgcaaaaa
      601 acaaagaagg taaagttatg caaggcatcg tagtgggtaa aaataggatg attatacaat
      661 gaaggtttta ttaggaattt ctggttcaag cagtgtcaat ttaggcttaa aattattaaa
      721 aaatttagaa aatcaatgcg aactttattg tattttaact caaggtgcaa aacttagttt
      781 caaagctgaa aatgaagtaa atttagaaga aatttgtcaa gaaaatttta aatacactca
      841 ttttttagat gataaaaatt taagtctaag tgtagcaagt ggatcttttg gaatagaaaa
      901 aactatcatt gctccttgtt cgatttcaag tttagcaaaa attcacgctg gttttgcaga
      961 cactctttta atgcgtgctg cagcagtagc cctaaaagaa agaaaaaaac tcatcttagg
     1021 cgtacgtgaa atgccttttt ctactttaaa tttagaacat atgttaaaac ttagccaaat
     1081 gggagttatc atcgcacctc ctattatcgc aagttattct aaagcaaaca atctagagca
     1141 aatggaaaat tttatcgtag gtaaatggtt agatctttta gaaataaaac acaatttata
     1201 tgaaaaatgg caaaattttt agtttaaatt tgttatattt ttaaaaaaaa ttggagcaaa
     1261 aatgacttgt ttatatcctg ggacttttga tcctattacc aacgggcatt tagatgttat
     1321 aaaacgggct ttaaaaattt ttgatgaagt catcgttgcc atagcaaaaa gtgaacataa
     1381 aaaaccttgc tatgatttag aaaaacgcaa agaactagcc ctgcttgcaa cacaaaattt
     1441 aaaaaatgtt aaaatcattg cttttgataa tttacttgta gatttagcca aagaattaaa
     1501 agttaatact ataatccgtg gacttagagc agtgagtgat tttgaatacg aattgcaaat
     1561 tggctatgca aatcacgcac tttgggaaga tatggaaacc atttatctta tgccaagtct
     1621 aaaacatgct tttatttcaa gttctattgt tcgctctata gtagcacatg ggggcgatgt
     1681 aagttctctt gttccaaaag aaattctacc ttttttaaag gatcaatctt gtatgtagtt
     1741 tttgaaggta ttgactgcgt aggaaaaagt acgcaaattt cacttttaaa agaaatttac
     1801 aaagacgcca tttttacact cgaacctggc ggaacagaac ttggaaaaca tttaagagaa
     1861 attttactta ataaaactca tcctattagc aaaagagctg aactcttgct ttttttagct
     1921 gatcgtgctc aacattttga agaaatctta aaaaccaatc aaaacaaact cattattagc
     1981 gatagaagtt ttatttcagg catggcttat gccaaagatt ttgaaaacga tttgcttttt
     2041 gctttaaata gttttgcttt agaaaatttt tttccacaaa aaattatctt tttaaaagga
     2101 gatgcaaacc ttatccaaga acgcctcagt caaaaagaac tagatagcat agaaaaacgt
     2161 ggcattgagt attttttaag tgtgcaagat aaactcgaaa aagtgcttca ttttttaaaa
     2221 gaaaaaattt ctatagaaat tttaacactt gacgcaaaag aaagtaaaga aaaattacac
     2281 caacaaataa aggaattttt acaatgatta acgctttaaa aggaatgaaa gatttattag
     2341 ataaagatgc atattattat gaaaaagtga ttaaaacctg cgaagaagta gctaaaaact
     2401 atggctttac ttttatcaat acaccgcatt tagaactttg cacccttttt aaaagaagcg
     2461 taggagaaag ttctgatata gtaggtaaag aaatgtatga atttatcgat aaaggcgaaa
     2521 atcatgtttg catgcgtcct gaaggaactg ctggggtggt gcgtgcctat atagaaaaaa
     2581 aactcgataa aaacactagt gtgaaaagat ggttttatca tggctctatg ttccgctatg
     2641 aaagacccca aaagggacgc ttaagagaat ttcatcaatt tggcgttgaa agttttggaa
     2701 atgcaagcgt ttatgaagat gcaagtatta ttttaatgtt agtagaaatt ttttcacgct
     2761 tggatattaa atttaaatta ctgattaact ctttaggctg tttaaaatgt atgccaaaat
     2821 atcgtgaaaa tttaatacat tttttagata gcaaagaagg tttttgcgag gattgtttgc
     2881 gtagaaaaaa cttaaatcct attcgtgttt tagactgcaa aaatgagcat tgccaaagct
     2941 tacttaacga tgctccgctt ttaaatcaaa atttatgctc atcttgtcaa aaagactttg
     3001 aaattttaca aagcgtttta aaagaaaatg gagtggattt tgaagtggat tctaagcttg
     3061 ttagagggct tgattactac tctaaaacgg cttttgaatt cattagtgat gaaattggtg
     3121 caaaagctgc tattgctggg ggcggaagat atgatagact tattgaatat cttgatggaa
     3181 aaagtggttt tggtgtaggt tttgccatgg gcatagaaag aattatagcc attttagaac
     3241 aaaaagaaga aaaggttcaa agagaaggaa tttatctttg tgctatggat gaaatttata
     3301 tccaaaaact tttgcatatc gctacaaatt taagaaaaga acataaagtg cttttaagct
     3361 atgaagcaag aaaactagct aaacatctcg aaaacgcgga taaaaataat gctgaaattt
     3421 ttctttgcat gggagaaaat gaagcacaaa atgaaagttt gttttataaa aatttagtaa
     3481 aaaaagaaga aaaaatgatt aaaatttcag acttaaagaa ggttttatga tggattatgg
     3541 tattgatatt tggggaaatg aaaatttcat tatcaaaaat ggtaaagttt gtatcaatca
     3601 cgagaaaaaa cctgctatta ttgatatagt taaagaatta agagatgatg gatataaggg
     3661 acctttactt ttaagatttc ctcatctcat ccaaaaacaa attgaaaata tttacggaaa
     3721 tttcaataaa gcaagaaagg aatttggcta taaaggagga tttaacgctg tttatccttt
     3781 aaaggtaaat caataccctg gttttgtaaa aaatcttgta aagcttggaa aagactataa
     3841 ctacggactt gaagcaggtt ctaaagcaga gcttttactc gctatggctt ataataacga
     3901 aggtgcacct attaccgtaa atggctttaa agatagagaa cttatcaaca taggctttat
     3961 cgcagctgaa atgggacata atatcacttt aactatagaa ggacttaatg agcttgaagc
     4021 tatcatagac atagctaaag aacgctttaa acctaaacca aatataggct tacgtgtgcg
     4081 tttacattct gctggagttg gaatttgggc aaaaagcggt gggattaatt ctaaatttgg
     4141 acttacatcc actgaactta tagaagcggt aaatttactc aaagaaaaca aacttttaga
     4201 acaatttacc atgattcact ttcatctagg ctcacaaatt accgaaattc atcccttgaa
     4261 aaaagcctta aatgaagcag gaaatattta cacagaactt agaaaaatgg gagctaaaaa
     4321 tctaaaagct atcaatcttg gtggcggttt agctgtagaa tactcacaat ttaaaaatga
     4381 aaaaagtaga aattatacct taagggaata cgctaacgat gtagttttta tcctaaaaaa
     4441 tatagctgaa caaaaaaaag atttagagcc tgatattttc atagaaagtg gacgttttgt
     4501 agcagctaat cacgctgttt taattgctcc tgtattagaa cttttttctc aagaatacgc
     4561 agaaaacaaa ctcatactta aaaaacaaaa tccaaaactt atcgatgagc tttatgatct
     4621 ttataaaagc ataaaacctt ccaatgcatt agaatacttg cacgatagca tagatcattt
     4681 agagagtatt ttaactcttt ttgatttggg ctatgtggat ttacaagatc gttccaatgc
     4741 tgaaatttta actcatttga ttacaaaaaa agccatcttg cttttaggtg ataagcaaaa
     4801 tcctgcggat ttacttgcta tacaagatga agtacaagaa aggtatttgg taaatttttc
     4861 actctttcaa agcatacccg atttttgggg cttagaacaa aatttcccta tcatgccact
     4921 tgatcgctta gatgaagaac cgactcgaag tgcaagtatt tgggatataa cctgcgatag
     4981 tgatggagaa atttcatact ctaaagataa acctttattt ttacacgatg tagatgtaga
     5041 aaaagaaaat tattttctag ggttttttct tgtaggtgcc tatcaagaag tacttggaat
     5101 gaaacacaat ctttttactc atcctactga agctattata agtatcaatg aaaaaggcta
     5161 tgaagttgag gggattatag aagcacaatc catacttgat gccttagaag atttagacta
     5221 tgatatacac gctatcatgg atatacttaa tgaacgcata agtaattcta agcttgtaaa
     5281 tgacaagcaa aaaaagcata ttttagggga gctttatctt ttcttaaatg ataatggtta
     5341 tttaaaaagc ataggagttt agatgaattt ttggggtatt ataaaagaag atttttctca
     5401 gccaaaggca caagatccag cttttaattc ttgtatagaa ctttttttta attaccctgg
     5461 agtgtgggct gtagtaaatt accgctttgc acattttttt tatataagaa attttaaacg
     5521 cattgctaga atgattagtg gaatttcaca attcttaact ggggtagatt tacaccctgg
     5581 cgcagaactt ggaaggcgtg tttttataga tcacgccaat ggagtggtta taggtcaaac
     5641 agcaattata gaagatgatg ttttaattta tcaaggcgtt actttaggtg gaacaagcct
     5701 agaaaaaggt gctaaacgcc atccaaccat aaaaaaagga gtgatcatag gctcaggcgc
     5761 aaaagtactt ggcaatatca ccataggaga aaatgccaaa ataggctcaa atgctgtagt
     5821 agttaaagat gtaggtgcaa atttaactgc cgttggcatt cctgcttata ttatcgaaga
     5881 gcgtaaaaat aaaaacatta gagccataga tgcaaattgc gatgacaaac tagaaaagtt
     5941 agaaaagaaa attttagaac ttgaaaatct tatattaaaa caacctgaat cacaaaaata
     6001 ataatttttt ataatacata aaattatatg tattattatg cgtattaatt tttcctaaaa
     6061 aattaataca aattttcaca tttattgaaa tttataactc atttttaaat taaatttatt
     6121 gtaaaaatgc aattttctgc taaaattaaa caaaaattat taaggattga aaaatgctta
     6181 caaaaagatc tcaagtttta gaagaatcta tcactttagc catcactgca cttgccaatg
     6241 aacttaaagc taaaggcgaa gatatcatta gtttttcagc aggcgaacct gattttgaca
     6301 caccacaaat catcaaaaat gccgctataa gtgctattga aaaaggatgt ggaaaataca
     6361 ctgctgttgc gggaattcct gaagtattaa aagctattca aatcaaattt aaaaaagata
     6421 ataatcttga ttatgaaaca agcgaaatta tcaccaatgt aggcgcaaaa cactctcttt
     6481 ttgaatgtat agaatgttta gtagaaaaag atgatgaagt gattatccct agtccttact
     6541 gggtaagcta tcctgaaatg gtaaaatttg caggtggaaa acctgtattt gtagaaggct
     6601 tagaagaaaa tggctttaaa attaccgctg aacaactaaa aaaagctatc acagctaaaa
     6661 ccaaggtttt gatgttaaat tctccttcaa atcctgtggg gtcgatttat tctaaagaag
     6721 aattaactca aattgcaaaa gttttagaag gaacacaaat cactgtttta agtgatgaaa
     6781 tgtatgaaaa acttcgctat gatggttttg attttgtagc ttttgcaagt gtaagcgaag
     6841 atgctttaaa acgcactgtg actattaacg ggcttagtaa atgcggggct atgccaggat
     6901 ggcgttttgg ctatatggca agcaaaaata aagccctaat ttcagccgtt aaaagacttc
     6961 aaggacaaag cacttcaaat atttgttcca tcactcaaca tgcagccatt cctgctttaa
     7021 atggagaatg tgataaagat atagaaaaaa tgcgtcaagc ctttgaaaaa cgccgtaact
     7081 tagccttaga catacttaaa caaatcccaa atatcagtgt ttataaacca gaaggtgctt
     7141 tttatctttt tgtaaatata caaaaaatag aaaaagattc tatgaatttt tgtcaaaaat
     7201 tacttgaaca agaaaaagtt gccgttgttc caggtgtagg ttttggaatg gatggatact
     7261 tcagactttc ttatgccaca agcgatgagc ttatcaaaaa aggtttagaa agaatagcaa
     7321 atttcattaa aaactataaa taattctagg ttaaagccta gaattattta ggcaaattaa
     7381 aaccttataa aatcaaggct ttttaagcac agcatttacc ctttgaacac tatctgattt
     7441 atttaaactc aatcttatta tagaattttc taatccacct aaagaatgcg ctacatttgc
     7501 ctctaggctt atcatatcta aaacatttaa ttcaaatttt tccttttcca cttcaaacca
     7561 aattttacca cttaaaactt gaacatgtat agcaaaagga gctttatgct ctttcatcac
     7621 actatcttta gctaataaaa tttgaatttc tttacctttt tcattgtcaa ttaaaacatt
     7681 gattttcact tcttttgggc taaattccgc cctattccat tgaatgattt tcacaaaatc
     7741 tcctttttta gttttataaa actatagcaa aaaccaaaat atagattata aacttgtgtt
     7801 aatttatcct tctttccacc aaaaatcctg tttaaattta gcccctattt cataagcctc
     7861 gcccattttt ggtgtgataa ggggtaaatc taaattttca taaagaaatt ttatcacttc
     7921 attccacgcg tgagttccta ctaaaaatct cccccaatgt ataggcatga cagcctttgc
     7981 attaagatct ttcgcttctt ttaaaatttg atcaggaaaa gagtgtgaat atggccaagc
     8041 gatattaaac tgtccgcttt caagacaagc tagatcaaaa cttccaaaat attcacctat
     8101 ttttttaaaa tgtgtaaaat atcctccatc tgcactaaaa aacactctct tatctacact
     8161 taaaaattcc atcacaaaag aagcccaaag ggttttgttt ttaccatctc ctctacttga
     8221 actgtgctgt gcaggtgttg caatgatttt taaatcacca aattctactc cactccacca
     8281 atcaagctct atgatttttt tctcactcac cccatagctt tttagataat ttcccacttt
     8341 taaaggtgtg ataaaaaatc gtgctttttc ttttaaagct tttatactct tagcatctaa
     8401 atgatcaaaa tgcgaatgcg tgataatcac agcaaaaatt tcattaaaat catttacatt
     8461 ataaacagga gtatttttaa aagccttatt gataaaagaa ataggcgaag catgagtgtt
     8521 aaaaacagga tcaatcaaaa ttttatattc tttaaaactt ataaaaagcg aagaatgtcc
     8581 aagccaagta atatgcggag tgctaaaacc actcaaatca ggcttgaaaa aaggtaattt
     8641 aaaagaagga atggcatttt ttggataaag ataataatac ctcaaaattt ctttaaaaga
     8701 cactttagga gttataagac tttgctcatt ttcattaaga aaaatttcat attttttacc
     8761 ctgcactttt ttagcttttg atcgttgcac attagaaata tcaaaggttt taaatgataa
     8821 attcaaattt ttccttttat gtttattaag attatatcta aaaagttttt agattaattt
     8881 tattttatta ctaagttttt agtttactta cgctaaaatg atttggatga agttaaattt
     8941 tctttagaag attttacaaa aattttacct acattattca aaccatttta gtaaaagaaa
     9001 tacaagaaaa tgaattatct gattttaaac tggaacttca aaaagaattg gttaaaaaat
     9061 caatgaaaaa ttaggtagca agctaataaa agaattatat tttacagatt ttgtcatttc
     9121 tttaaaattt taaaaaattt tcaagccttt taaaaaggct tgaatagaga ttttaggatt
     9181 actcaacttc agcgtcgatt acatcgtcat cttttttctt tttatcatta gctgtatttg
     9241 gctcatcttt tttatacata ttttcagcta acttatgaga aacttcactt aaagctttca
     9301 ttttactttc aatctcttct ttgcttgcat tttgattttt caaagtctcg cgcaaatcat
     9361 caagagcttt ttggatattt tctttatcag cagcagcaac tttttcaccc agctcgctta
     9421 aagatttttc tacttgatgc gccaagctat cagctgcatt tctagcatct acagcttctt
     9481 tgcgtttttt atcttcttct ttgtgaagtt cagcatcttt taccatgtta ttaatttctt
     9541 cttcgctaag tccgcttgaa cctgtgattt tgatctcttg agccttacct gttgctttat
     9601 cttttgcact aacggttaaa ataccatttg catcgatatc aaaagtaact tcgatttgtg
     9661 gcataccgcg tggtgctggt ggaattcctt caagattgaa atttcctaaa gatttattat
     9721 cacgactaaa ttctctttcc ccttgtaaaa cattgatagt tacagcactt tgattatcct
     9781 cagcggttga gaaaacttgc tcttttttag ttggaatagt tgtacctttt tcgataatct
     9841 tagtcattac cccacctaga gtttctatac ccaaagagag cggagtaaca tcaagtaaaa
     9901 gcacatcttt aacatcgcct tttataaccg caccttgaat cgccgcacca atagccacaa
     9961 cttcatctgg atttacagac ttgttaagat ctttattaaa ggcttttttc acttcttctt
    10021 gcactaaagg aacacgagta gagcctccta ccataacaat ttctttaatc tcatcttttt
    10081 taagacctgc gtcgcttact acttcattga ttttagtgat ggtttcagcc actaaagaat
    10141 caatcatacc ttcaaattta gctctagtaa gttttttaac caaatgtttt ggcccacttg
    10201 catctgctgt gataaatggt aaattaattt cagtttcatt agctgagctt aattcttttt
    10261 tagcattttc tgctgcttct ttcaagcgtt gtagagccat aacatcattt ttaagatcta
    10321 tgcctgtttc atctttaaat tcattagcta gaaaatcaat aagtttatta tcaaaatcat
    10381 cgccacctaa gaaagcatta ccacctgttg ctaaaacttc tactacatta tcaccggttt
    10441 caagcacagt aacgtcaaaa gttcccccac ctagatcata aaccacgatt ttttcactat
    10501 cttttttatc aagtccataa gctagagctg ctgaagtagg ctcattgata attcttaata
    10561 cattaagccc tgctatcgtt cctgcttctt ttgtcgcttt tctttgtgca tcgttaaaat
    10621 atgcaggcac agtaataact gcatctacaa cactctcgcc caagaaagct tcagcatctt
    10681 cttttagttt cattaaaact tttgctgaaa tttcttgcgg agtataaatt ttccctgcga
    10741 tctcaatagc acaagcacca tttctttcag tgatatgata aggaagtctg tttttagctt
    10801 ctttagccgc gtcttcattg atcatcaaac ccataattct tttaatagaa taaatagttt
    10861 tttcagggtt agttaccgct tggcgttttg cactatctcc tactaaaacc tcgcctttat
    10921 ctgtaaaagc taccacagaa ggagttgtat ttttaccttc tttatttgga attactttac
    10981 tctcaccgcg ttcatacaca gcaacacaag aattggttgt tcctaaatct atacctataa
    11041 ctttactcat tttttatcct ttttattaaa atttattttg ctacactaac tttggttggg
    11101 cggattacgc gatcggctat tttatagcct ttttgaagca cggtaaccac ttcaccactt
    11161 tgatgatttt ggctatctac atgaaacatt gcctcatgta aatttggatc gaactctttt
    11221 tcttctttaa taagagccac tccatgcttt tcaagttttt taagaaacaa atctaaagtg
    11281 ttttgcactc cttctttgat ttttaagcta atttcatcat gacattcgac attaatagct
    11341 gcttctaaag catccaaaac atcaagcaaa tcctttgcaa agctttcatt tgcataagcc
    11401 atagcactta gcttttcttt ttccattctt tttttaatat tttcaaattc agcgtttgca
    11461 cgcatatatt tgtcttttaa ttcatcatag tctttttgca atctgttttg ctcaacatct
    11521 tcgatatttt gcaaattctc atcttgcaaa tgttcagaat tttctgcgtt ttcattttca
    11581 aattcttgct tttgctcgct cacgccgcct cctttatgta ttgtaatatt tttttataat
    11641 ccgtataaac actacctgct aagataatat ttacatcttc gcccaaaaac tgcgcatcca
    11701 ccttaagccc cataaaacct tctttaaata aaggttcaaa ttcaagactt tctttaaaat
    11761 aacgatgaac tccgcaatct aagagcttaa caaattcatc attttgataa atttgataag
    11821 ctctttcttc attgcttcta tagcaaatca aattttgcct taagctagct attttttcta
    11881 caagatccat aaaatgaacc ctcaaagcta ttttttctat actaaaaaga tccaatccta
    11941 taagactttg taaaaaattc catgcttctt tttcatattt taaaacgagc tcttcttctt
    12001 taaaatcaag cactataaac ttagcattta gatcaagcac ttctttaagc actaagcttc
    12061 taccaccata aacaagacag taaatttcaa attctttact caactctttt aaaaaattct
    12121 cacttttgat attgatatct tgatcttgtt cttttttcca aaaactttgc cagtaatttt
    12181 gcattgtcaa aatagtagga attctaccac tacttatatg aagctgagtg atcaaaccct
    12241 cgtcgctaag ccttttaaga tagacgcgta tagttgaagc agggatgcaa agatttaaat
    12301 tcaattcatt tgaaccaata ggaacattat ctaaaagata agtttggatg atagaatcta
    12361 aaatcaaatc ctttttatct cggcttttca tagctctttc cttaaatttt tagcactcta
    12421 ttttttgatt gc
//
LOCUS       DAEBKH010000037        12276 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.037, whole genome shotgun sequence.
ACCESSION   DAEBKH010000037 DAEBKH010000000
VERSION     DAEBKH010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12276
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.037"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..1746)
                     /locus_tag="KIL20_000727"
     CDS             complement(<1..1746)
                     /locus_tag="KIL20_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HBD2720769.1"
                     /translation="MLNKELEIFKKNLSSYTQSCRKFFLKQGAFSLYHSKNMDNFIKK
                     AYDIVLKDYFDDFSPPSDNIPFCVLASKAYANNSLCFNESISLIFVYKDIKAFHLKPM
                     IKAFIEILNDAHLQIDSVILEFNGLYNASNELKTSIIQTRFICGSRILFKGIKTKFES
                     ILKENKNDFAKLLLENFKEFDIPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNY
                     ALNFIDEKNLSELRLAGDFLLSLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHF
                     GANELLVQKALQSMHTIGFYTHFLAKQIQDGLNHTLKQEYKFKTLVEVLEYLLKLEDK
                     QVIFDLNLVFALRRLKYSKKDIEKALILFEKIFYKRHSFCVLKLLLDSGILKDLCKPF
                     WTVRFLSDEEGNYSFDEQVFLMLSEFEKYEDELEILQKLKTDEKMILKLVILLSAIES
                     ENEISLAGIYRAYCSKFDLKNEILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVSK
                     LENLENLELLYTLTWLKAKALNYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKE
                     LTLKRSKIFLEQDEIL"
     gene            1889..2953
                     /gene="mqnE"
                     /locus_tag="KIL20_000728"
     CDS             1889..2953
                     /gene="mqnE"
                     /locus_tag="KIL20_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HBD2720770.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKGKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDNSFIQTDKIMDSEEILKTIAIARLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            2963..4282
                     /locus_tag="KIL20_000729"
     CDS             2963..4282
                     /locus_tag="KIL20_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HBD2720771.1"
                     /translation="MDFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMP
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFIFGVLVSSIIAWIFHLDNASFPVQIF
                     SLPNFSMENGLGAIFLQLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            4296..4739
                     /locus_tag="KIL20_000730"
     CDS             4296..4739
                     /locus_tag="KIL20_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HBD2720772.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKKDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDDTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKIATIFYKKTALLKPDFKVKEATEWVDFYWDINLD"
     gene            4784..5482
                     /locus_tag="KIL20_000731"
     CDS             4784..5482
                     /locus_tag="KIL20_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HBD2720773.1"
                     /translation="MRIKFISFILIFFTIFAFAKEQNLDDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNAITPEFIRLGARNFFDNLLAPLRFVGNVLQFKFEE
                     AGEEFKRFAANTIMGFGGLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLTLPATWYTSFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
     gene            5492..6061
                     /locus_tag="KIL20_000732"
     CDS             5492..6061
                     /locus_tag="KIL20_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HBD2720774.1"
                     /translation="MKKIFLILTLFFNAFALQLDEISSTMQKNIDASLKLLQDSKEDK
                     KQAANGIFKLFDSIIDYKLMAKLSLSKNYSKLTPKEQEKFTTAFETSLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSTVVDGEEKNIIFKFYNDNNNWLIYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            6061..8532
                     /locus_tag="KIL20_000733"
     CDS             6061..8532
                     /locus_tag="KIL20_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HBD2720775.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKAQNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNNLIEKRDLASDEKEKDQIRLAIKEHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMIAYIKSDLVLYGVSLVFLLGLALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYVALVLIITLSVVVHLITHFIESTQNHPK
                     AKVERIVLETLLAKANPSLYAIVTTMIGFFSLILSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYGISVLAIILALIGIL
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNTSDTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSVLSLNSLLTLGENINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNEFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMVSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKFPNQYKEHILKQ"
     gene            complement(8563..9165)
                     /gene="rdgB"
                     /locus_tag="KIL20_000734"
     CDS             complement(8563..9165)
                     /gene="rdgB"
                     /locus_tag="KIL20_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HBD2720776.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSDKGDDKSNR
                     DKLVNEMIKKGFNQSRAHYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            9332..10633
                     /locus_tag="KIL20_000735"
     CDS             9332..10633
                     /locus_tag="KIL20_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD2720777.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKRGLAKQILLLGIVFF
                     ILSYLFFAFSNSIVFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDALNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     SFSTFSENLGVVDIYKNSKNLVVKFDSKLINKEELEGKIKI"
     gene            complement(10636..12273)
                     /locus_tag="KIL20_000736"
     CDS             complement(10636..12273)
                     /locus_tag="KIL20_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HBD2720778.1"
                     /translation="MPLPDAIEILDQANDKEVLVCNDKNQKAQIYAPEINFYLKNSQD
                     EILEQSKNVLTLYKARASVYDLGLDLEQSKEVQNRLILADSDTQTVEFLKEHGFKVIA
                     LSSVEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAEDLSAVRKDFTRQSGCYNLL
                     NFENLEVLLEFLQSKSPKYHYKTYISYNASVCQYHERRSEHCAKCAEICPTVAILKDD
                     EKKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKDKKILIIPKKMSL
                     ENLNLALPKDVLPFMIEGEKWLSSMHFLALLQNSGANLVFYTDFVSRGSNEAIVLLNT
                     FFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRENFAKRMQEMIKN
                     EDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQENALKFNASLCTTC
                     GYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDELFACIECGKEFATKKAVEKIAN
                     LMKPKFGNDENKIKTLYCCADCKAKVMIKAMGFAGQN"
BASE COUNT         4173 a         1916 c         1792 g         4395 t
ORIGIN      
        1 caaaatttca tcttgctcta aaaaaatctt acttctttta agtgttaatt ctttttttac
       61 tcttcttgcg ctttcttcaa gtagattttc atcttcaaaa ccttgttttg cattttctaa
      121 aagtttatca agaactctaa aataaaaagc attataattt aaagccttag cctttagcca
      181 agttaaagtg tataaaagct ctaaattttc taaattttct agcttagaaa ccaagctact
      241 tacaacaata ggattgtata tatcttcttt ttctacaaga tcttttaagg cattattgtt
      301 tttaaatatc ttaagacccc attctaaaat ttcattcttt aaatcaaatt tggagcaata
      361 cgctctatat atgcctgcta aagaaatttc attttcactt tctatagcgc ttaaaagtat
      421 cacaagcttt aaaatcattt tttcatcggt tttaagtttt tggagtatct caagctcatc
      481 ttcgtatttt tcaaattcac ttaacataag aaaaacttgc tcatcaaaac tataatttcc
      541 ttcttcatcg cttaaaaaac gaactgtcca aaaaggcttg cataaatctt ttaaaattcc
      601 actatcaagc aaaagtttta aaacacaaaa actatgcctt ttataaaaaa ttttctcaaa
      661 aagtattaaa gctttttcta tatctttttt actgtatttc aatcttctta gggcaaaaac
      721 caagttaaga tcgaaaataa cctgtttatc ttcaagtttt aataagtatt ctaaaacttc
      781 cacaagagtt ttaaatttat attcttgttt aagagtatga tttaatccat cttgaatttg
      841 ctttgctaga aagtgcgtat aaaaacctat agtatgcata ctttgcaaag ccttttgaac
      901 caacaactca tttgctccaa aatgtttttt agctttttta tacattaatt cactcaaatc
      961 atgaacatta ataagtaaaa actcatcctc atctttagcg cttaataaat tcatcgctga
     1021 ttttaaagaa agtaaaaaat ctccagctaa acgcaactca cttaaatttt tttcatctat
     1081 aaaatttaag gcataatttt ttggagaagt cttaaaaaga acaagcaaac tctctaagga
     1141 tcttaaatga tttaatccgc caaaatcttt taagatatta aattcctgct ttataaatgg
     1201 aatatcaaat tctttaaaat tttctagcaa aagcttggca aaatcatttt tattttcttt
     1261 taaaatactc tcaaattttg tcttaatccc tttaaataaa atcctagaac cacatatgaa
     1321 acgagtttgt attatagaag tcttaagctc attgctagca ttataaagtc cgttaaattc
     1381 taagataaca gagtcaattt gcaaatgcgc atcatttaaa atttcgataa aagccttaat
     1441 cataggtttt aaatgaaaag ccttaatatc tttataaaca aaaatcaaag aaatactttc
     1501 attaaaacaa agactattat ttgcatatgc tttgcttgct aaaacacaaa aagggatatt
     1561 atcacttgga ggtgaaaaat catcaaaata atctttaaga actatatcat aagctttttt
     1621 tatgaaatta tccatatttt tagaatgata taagctaaac gccccttgct taagaaaaaa
     1681 ttttctacaa ctttgggtat aggaactaag atttttttta aaaatttcta attctttatt
     1741 taacaaaatt tctactctct ttaaatttta atattttaat aataatctta acaaaaatat
     1801 cttttatttt ggctttttct ataaactctt tttcagtaag caaaaattat aatgctttat
     1861 ttaaaaacag caaaagagta aaattaaaat gaaaaattta attaccaaac tagaaaatga
     1921 agaaagatta aaccaagaag aagccaatgc actttgggat ctagatcttt ttaccttagg
     1981 caaatacgct cacaaaaaac gcaccaaact tcatggaaaa aaagtttatt ttaatatcaa
     2041 tcgtcatatc aacccaacta atatctgtgc agatacctgt aaattttgcg ccttttcagc
     2101 acaccgtaaa aatcctaatc cttatttgat gactcatgaa gagattatga aaattgtcga
     2161 tgaaaccgta aaacgagaaa ccaaagaagt acatatcgtt tcagctcaca acaaagatac
     2221 aacttggcaa tggtatttag aaatttttaa aatgataaaa gaaaaatatc ctaatcttca
     2281 tgtaaaagct atgactgctg ctgagattga ttttttacat cgtcgtttta aaatgagcta
     2341 tgaagaagtg atagaaaaaa tgcttgaata cggcgttgat tccatgccag gcggtggggc
     2401 tgaaattttt gatgaagaag tgcgtaagaa aatttgtcat ggaaaagtta gcagtgaaaa
     2461 ttggcttaaa attcataaac tttggcatga aaaaggcaaa caaagtaatg ctaccatgct
     2521 ttttgggcat atagaagaaa gacatcacag gatcgatcat atgttaagac tgcgtgatct
     2581 tcaagatcaa accggtggat ttaatgcttt tatccctcta gtttggcaaa gggataatag
     2641 ctttatacaa actgataaaa tcatggatag tgaagaaatt ttaaaaacca ttgccattgc
     2701 tcgtttagtg cttgataata ttaaaaatat caaagcttac tgggcaacaa tgactttaaa
     2761 tttagccatg gtagcacaag aatttggagc taatgattta gacggtacca tagaaaaaga
     2821 aagcatacaa agtgcaggtg gtgcaaaatc tgctaaaggc acaagtttaa aaacttttat
     2881 cgatatgata aaaacttcaa atcttattcc tgtagaacgc gatagtttat ataacgagct
     2941 aaaaacctac taaggagaaa aaatggactt ttttaaactc aaagaaaaca atacgagttt
     3001 taaaaccgaa gttatagcag ggcttactac ttttttggct atggtttaca ttatccccgt
     3061 aaattctagc atagtaggaa atacaggaat gcccatagaa gctttaatca ccgcaacagc
     3121 tttaatcacc atagttgcaa gtgcttttaa tgcttttttt gccaatactc ctgtagctat
     3181 gagtgtagga atgggtttaa atgcttattt tacctttgcg gtttgtttag gtcaaaacat
     3241 agcttggcaa agtgccttag gagctgtttt tatttcaagt attatttttc tcatactttc
     3301 ttttacgcat tttcgccttt gggtaatccg caatatccca aaagatttac gccttgcaat
     3361 ttgtgcgggt ataggttgtt ttatagcttt tttaggctta agtcaaatgg gtgtgatcat
     3421 gcataataaa gatactttag taagcatagg aaatttcaaa agtcctcatg tgctttttgg
     3481 aattttcact ctagctttaa tcatcttttt ttgggctata aaacttcgcg gagcttttat
     3541 ttttggggta ttagtaagct ctattatcgc ttggattttc catttagaca atgcaagttt
     3601 tcctgtgcaa atcttttctt tgccaaattt tagcatggaa aatggcctag gagccatctt
     3661 tttacaactt gatatcaaaa gtgccttaaa tattactatg atacctataa ttcttacttt
     3721 ttttatcact caactttttg atagtatagg aactatcaca ggtgtgggtg aaagaggaaa
     3781 gatttttgat gatccaaaaa atggagaaaa aaaactaagc aaaacattaa tggcagatgc
     3841 aacaggatcg gctttaggag ctatgacagg cacttctaca gttacagctt ttgtagaaag
     3901 cactacaggg gttgaaagcg ggggaagaac tgggcttaca gctttagttg tagctatttg
     3961 ttttgctttt acactttttt tactgccact ttttaaagcc attcctgcaa acgcaatata
     4021 ccccgtactt gtaatggttg gaattttaat gtttatggaa gttaaaaata tagattttaa
     4081 agatagtgct atagctgtag caagcttttt tactattatc atgatgcctt ttacttactc
     4141 catcaccaca ggttttgctt ttggttttct ttcttattta cttgtaagaa tttttaaacg
     4201 cgaatgggat aaaatcaatc ttggcattat agttttaagt ttattatctt tgggtaattt
     4261 tttacttatg gcactacaat aaataaggat atataatgat attttactcc tatgaagaat
     4321 ttaaagaaga tgtaaaaatt cttgctaaag aaattaaaaa agattttaat cctgatgcac
     4381 ttttagctat agcaagagga gggatgagtt tggggcattc tttagcagtg gctttaaaaa
     4441 cgcgtcagct ttttgcttta aactcaattc attacgatga tacaaaaaaa cttgatacaa
     4501 ttgaaatttt taacattcct gatttaagca agcacaaaaa aattctactc attgatgata
     4561 tagtagatag tggagaaagt ttagcagaaa taaaaaaagt tttgcttgaa aaatttcctc
     4621 atatagaact taaaattgca accatttttt ataaaaaaac tgctcttttg aagcctgatt
     4681 ttaaagtaaa agaagctact gaatgggtgg atttttactg ggatataaat cttgattaaa
     4741 aatttgctat aattttactt ttaaaatttt taggagtttt tgcttgagaa taaaatttat
     4801 atcttttatt ttaatttttt ttactatttt tgcttttgct aaagaacaaa atttagatga
     4861 ttttgaacaa gaataccaaa actatcaagt aaacgatcca ctttcaggat ataacaaagc
     4921 tatgacaagt tttaatgtgg ctttgtatga ttatggtttg cgtcccgttc ttaagggcta
     4981 taacgctatc actcccgaat ttataagatt aggggcaaga aatttctttg ataatttact
     5041 tgctcctttg cgttttgtag gcaatgtttt gcagtttaaa tttgaagaag cgggagaaga
     5101 atttaaaaga tttgctgcca atactattat gggctttggt ggacttatgg atgtggcatc
     5161 aaaaatgggt cttaaaaaac atcccgcgga cttaggaact gttttggctc actggggtgt
     5221 aggaagcggt tttcatattg tcttacctat actcggccct agtaatctta gagacactct
     5281 tactttacct gcaacttggt atacaagttt taccgcttac attgatccta cttgggcaag
     5341 tatagctata agtgcttatg gatttggtaa tgaacttagt tttaggcttg atgaaattga
     5401 tgaaatttat cacaacacgc ctaatttata tccattcttg cgtgatgctt acgagcaaag
     5461 acgcaatgaa cttagcaaat aaaggaaatt aatgaaaaaa atatttttaa tcttgacttt
     5521 attttttaat gcttttgcct tacaactaga tgaaatttct agcactatgc aaaaaaacat
     5581 tgatgcaagc ttaaaacttt tacaagatag taaagaagat aaaaaacaag ctgctaatgg
     5641 aatttttaaa ctttttgata gcataataga ttataaactc atggcaaaac tgagtctttc
     5701 gaaaaattat tctaaattaa ccccaaaaga acaagaaaaa tttaccacag cctttgaaac
     5761 aagtcttaaa aaaagtttta ccgataaact cagtctttat aaagatcagg ttttaaaggt
     5821 caaaaatggt gagttaaaaa atgaaaaacg ttatttttta accacttcta cggtagtaga
     5881 tggggaagaa aaaaatatca ttttcaaatt ttacaatgat aataacaact ggcttattta
     5941 tgatgtagat gttttaggtg tgagtatagt acaaacttat agatcacaat ttggagatat
     6001 tttagccaac caaggctttg atgccctact tcaaaaactt gaaagtattg tcatagaata
     6061 atgtttgcaa agcttttaaa gttttttatt tctcgtccaa aaagtacttt ttttggaacc
     6121 ttgtttatat gtctgttttt aagctttttt gcttttaagc ttagtgtaga tgcaagtgct
     6181 gaaagtttac ttttagaaga tgatgcagat ttaaaaactt ttagagaaat ttcaaaacat
     6241 tataaaagtg ataatttttt acttttagcc ttcaaaccct atgatgaaaa acctttttca
     6301 aatgaaaatt tagccaaatt aaaaaaactt catgaagaat tagaaaaagc ccctttagta
     6361 gaacgcgttt ttagtatcat caatgcccct ttgcttcaaa gttcgcaaaa tacggattta
     6421 aaagaacttt taaaaaatat cccaaatata gaaagccaag atataaaccg cacaaaagcc
     6481 caaaatgaaa ttttaaatag tcccttttat aaaaataata tcatctcaaa agatggaaaa
     6541 gtaacagggc ttattattta cttaaagcct gatacagttt ataataatct tatagaaaaa
     6601 cgcgatcttg ctagtgatga aaaagaaaaa gatcaaattc gtcttgccat aaaagaacat
     6661 caagacaagc aaaaagttat cacgaaacaa agtctagata ctattaaaag catagttcga
     6721 aattatgaaa aaaataaaga tacgctctac cttggtggcg taagcatgat cgctgatgat
     6781 atgatagctt atataaaatc tgatcttgtg ctttatggtg tttctcttgt gtttttacta
     6841 ggacttgcac tttattattt tttccgttca tggcgttttg tttttttacc tctttttatt
     6901 tgttttataa gcttaagtgc agctagcgga gtttttgcac ttttaaattt tcaaatcaca
     6961 gttatttcat caaattatgt tgctttggtt ttaattatca ccttaagtgt agttgttcat
     7021 ttgatcacgc attttatcga aagcacccaa aatcatccca aagctaaagt tgagcgcata
     7081 gtgcttgaaa ccttactagc caaagcaaat cctagccttt atgccattgt tacaacgatg
     7141 ataggatttt tttctttaat cctatcaaat atcgaaccta tcataaaact tggcattatg
     7201 atgagtatag gtataggttt agctcttatc tttagttatt tgtttttagc aagtatctta
     7261 gttcttttaa aaccaaaaaa ttatcataaa aaagagttta aatttaatct tttagccttt
     7321 tgcgccaaaa ccgctcttga tcctaaaaag cgtcgcatga tttatggaat ttcagttctt
     7381 gctataatct tagctttaat aggcatttta aaactcagag ttgaaaattc ttttgtcaat
     7441 tatttcaaag atggtagtga aatcaaaaaa ggacttttgg ttattgataa aaatctaggt
     7501 ggaaccttgc ctttagaagt catcattcgt tttccaaata ataaaaacga tcaaaataca
     7561 agtgatactc ttgatagttt tgaaagtgaa tttgaaaatt tagccacaca agaaacttat
     7621 tggtttgact ctaaaaaaac acgtattgca aaaaaagttc atgaattttt agaaaacaaa
     7681 gaatttgtag gctcggtttt aagtcttaat agtcttttaa ccctagggga aaatatcaac
     7741 gatggaaaag agttagatga ttttgccctt gcgtttttaa atgagaattt acctgctaaa
     7801 tttaaacaag acttgctttc accttttgta agcatagaaa ataacgagtt aagatttagc
     7861 atgcgtattg ttgattctga tccgaattta agacgtaatg agtttttaat agatcttaaa
     7921 aaacagctca acgagcttgt aaaaaacgat ggagtagaag ttcaaatcac aggcataatg
     7981 gtgctttata ataatatgct ccaaagtctt ttttcatcgc aatttgatac tcttatattt
     8041 gtaattttag ctatttttat actttttatc attgttttta gagatttaaa attttcagtt
     8101 gcggctatat tggtaaatgt tattccttta agtgtggttt ttgctcttat ggggctttta
     8161 ggtattcctt tggatatgat gagtattact atagctgcta ttgctatagg cataggtgtt
     8221 gatgatgcta tacattatat ttatcgtttt agagaagaaa ttaaaaacaa aagcctagaa
     8281 gaagccatta tgatttctca ccttagtata ggttcagcac tttattatac cacaattagc
     8341 atagttttag gttttagtgt tatggtgagt agcaatttta ttccaacaat ttattttgga
     8401 attttaaccg tttttgtaat gattttgctt ttaagtggaa gtttgttctt attaccaagc
     8461 tttttaatca ctatttattc taagaaaacc aagtttccaa accaatataa agagcatata
     8521 ttaaaacaat aatagctata tattttaaaa aatttttcat ttttatcctt tatttaaaat
     8581 ctttaaaatg atttttgcaa gctctaaagc tttaaaacga tgagagatat tattcttctc
     8641 atccacgcta agctgggcta aggttttatc aaaacccttt ggaataaaaa ggctatcata
     8701 accaaaacca ttttcacctt tttctgtatc tattactttt ccatgcatgg ttccatgcgt
     8761 actaaattcc cccatcaaac ccaccatagc aatagcagca acataatgtg ccctgctttg
     8821 attaaaacct ttttttatca tttcattgac aagtttatca cggttacttt tatcatcgcc
     8881 cttatcgcta aatcgagcag aataaattcc tggatttcct tctaaaacat ctacacaaat
     8941 gccactatca tcacttaaag cgataaaatc ttttttttgc ttttcatcca aagcattaaa
     9001 aaccgctctt gctttaatca aggcgttttc tttaaaagtt tttccatttt cttcaatctc
     9061 aaaaggcatt aaaacttcat caaaagcata aatttcaaaa tcttttaaaa tttctttaag
     9121 ttctaaaact ttatgtttat tgctcgtagc taggataatc ttcataacaa aagctccaaa
     9181 ataatatcaa aaacaaaaat atgattttat aaaatttatc cttgtgcgta gcttttaaat
     9241 atcaaatgat aaaacgatgt taatcaatgc ttaatccatt tcatagtaaa attatcctaa
     9301 tttaaatttc aaatttaata ggaaattgat aatgctaaat aatgtcttac ccttatcttt
     9361 catagttgga acaagatttt ttgggctttt tatagttttg ccagttttaa gtctttatgc
     9421 tttaaaactt gaaggtgcta atgaattttt agtgggactt ttagttggtg tttacgcctt
     9481 aacccaaatg attttacaaa tgccttttgg gattttaagt gataaaattg gtcgtaaaaa
     9541 aaccatgctc attggactga ttatttttat aataggctct ttaatctgct cgtttgcaga
     9601 aaatatttac accatgcttt tagggagaat gctccaaggt gcaggggcta ttggagctgt
     9661 ggctacagca atgataagtg attttatcac agaagaaaat cgtggtaaag ccatggcagt
     9721 aatgggttct tttataggac ttagttttgc agcttctatg gtaatctctc ctttaatgag
     9781 tgcaaaatgg ggtttatcta gcctttttga tcttagtgca gctttgtctc ttttatgtat
     9841 aattttactt tataccgttg tacctaaaga aaacaaaatc actcatgaaa atgaaaaaac
     9901 tccttttttt catcttatta aacaaaaaaa tttagccctt atgaatctta ctaatttcat
     9961 gcaaaaaatg cttatgagta tagcattttt aagtattcct attattctag taaaacattt
    10021 aggctttgct tctgataaac tttggattgt ttatagcgct tctatggtgg caggttttat
    10081 cgctatgggc tttgctggaa gtttaggcga aaaaagaggt ttagctaaac aaattttact
    10141 cttaggaatt gtttttttca tactttctta tctttttttt gcttttagta attctatagt
    10201 tttttttatc atagcagttg tgattttttt tataggtttt aatttacacg aacctattat
    10261 gcaaagttgt gcatcaaaat tttgtaaagt tcatgaaaaa ggtgcagcat tagggttgtt
    10321 taatgctttt ggatatggtg gaagttttat aggtggtatt atcggaggga tatttttaca
    10381 tctagatgcc ttaaatcttt tggctattat tttagtaatt ttagctctaa tttggcttgt
    10441 ggcattattt ttcttaaaaa atccagctga ttttaaaaac ctttatctac ctttagaaac
    10501 gcctttaagt ttcagtactt ttagtgaaaa tttaggggtt gtagatattt ataaaaactc
    10561 taaaaatctt gttgttaaat ttgatagcaa acttataaat aaagaagaat tagaaggcaa
    10621 aattaagatc taaatctaat tttgccccgc aaaacccatt gcttttatca tcacttttgc
    10681 cttgcaatct gcacagcaat aaagtgtttt gattttattc tcatcattac caaatttagg
    10741 tttcattaaa ttggctattt tttctacagc ttttttggtg gcaaattctt taccacattc
    10801 tatacaggca aaaagctcat cttttgccat ggtttgatat tcaaaataag aagctctaaa
    10861 ctccattcca ctacgaaata attttaaagt atctttttca gcgcaactta actcacaata
    10921 cccacaagtc gtgcaaagag aggcattaaa tttcaaagca ttttcttgtt tatcagcgat
    10981 taaagctcct acattacagg cacccacaca agaaagacaa agcgtacagg tgttaggatt
    11041 gatttctacc ttaccataac gcaaccattc gccactttct atactgccaa aatcttcatt
    11101 ttttatcatt tcttgcattc ttttggcaaa attttctctt gtagttaagg tgttgttatg
    11161 aaaatcatat tttaaatctt gtatgaattc ttgctctttt aaaacatttt gcaattcttt
    11221 ttcatcttta gcaacaaaaa tagctttttt ttgaaatttt ctctcaaaaa aagtatttaa
    11281 aagcacaata gcctcattac taccacgaga tacaaaatcc gtataaaaaa ctaaatttgc
    11341 tccactattt tgcaaaaggg ctaaaaaatg catagaagaa agccattttt caccctctat
    11401 cataaagggt aaaacatctt ttggtaaagc aagatttaaa ttttctaaag acattttttt
    11461 aggaatgatt aaaatttttt tatctttata aaactcacaa agggtaaaaa aactttctct
    11521 tggcatagga gcataatcaa gtgatccgct aggacacacg ctaatacatc ctccacaacc
    11581 caaacaatcc acttgagaaa attctaaatg ctttttttca tcatctttta aaatcgccac
    11641 agtaggacaa atttcagcac attttgcaca atgctcactg cgtctttcgt ggtattgaca
    11701 cacgctagca ttatagctaa tataagtttt ataatgatat tttggacttt tgctttgcaa
    11761 aaactctaac aatacttcaa gattttcaaa atttaaaaga ttataacatc cactttgtct
    11821 tgtaaaatct ttacgcacag cgcttaaatc ctcagcttta aaaagtaaaa aatcaaaatc
    11881 tatttccact tcttcgcctt gatttttaac cacagcacaa agctccccta cacttccaaa
    11941 aacagctaaa atttctacac tgcttaaagc aataacctta aatccatgtt cttttaaaaa
    12001 ctctacggtt tgagtatcgc tgtctgctaa aatcaaacga ttttgcactt ctttgctttg
    12061 ttctaaatca agccctaaat cataaacact agctcttgct ttataaagcg ttaaaacatt
    12121 tttactttgc tctaaaattt catcttgaga atttttaaga taaaaattaa tctcaggggc
    12181 ataaatttgt gctttttgat ttttatcatt gcaaactaat acttctttat catttgcctg
    12241 atctaaaatt tcaatagcat cgggcaaagg gattaa
//
LOCUS       DAEBKH010000038        12187 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.038, whole genome shotgun sequence.
ACCESSION   DAEBKH010000038 DAEBKH010000000
VERSION     DAEBKH010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12187)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12187)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12187
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.038"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            89..1906
                     /locus_tag="KIL20_000737"
     CDS             89..1906
                     /locus_tag="KIL20_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HBD2720779.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPTKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAQKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGYEDSDIREFESKNIRKNLNYSEFLLG
                     ICKVNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEELNNFLKEYLSFLKY
                     EKNEEILQQSFRNLNGIFSNKNFTAYDLGFSAQDNDEPF"
     gene            1988..2260
                     /locus_tag="KIL20_000738"
     CDS             1988..2260
                     /locus_tag="KIL20_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HBD2720780.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGVVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            2247..2798
                     /locus_tag="KIL20_000739"
     CDS             2247..2798
                     /locus_tag="KIL20_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HBD2720781.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANDRFIKLQEKLIGFKSEIKT"
     gene            2782..4065
                     /locus_tag="KIL20_000740"
     CDS             2782..4065
                     /locus_tag="KIL20_000740"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HBD2720782.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLKFVAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISAIATNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGTIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            4069..4380
                     /locus_tag="KIL20_000741"
     CDS             4069..4380
                     /locus_tag="KIL20_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HBD2720783.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            4377..5471
                     /locus_tag="KIL20_000742"
     CDS             4377..5471
                     /locus_tag="KIL20_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HBD2720784.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNTKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDAYWGDIGVDFVVRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNT
                     SLVVTKIDPKSKASNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            5468..6313
                     /locus_tag="KIL20_000743"
     CDS             5468..6313
                     /locus_tag="KIL20_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HBD2720785.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDTHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            6323..8221
                     /gene="tkt"
                     /locus_tag="KIL20_000744"
     CDS             6323..8221
                     /gene="tkt"
                     /locus_tag="KIL20_000744"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HBD2720786.1"
                     /translation="MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSGKKELLERLLNPDFSKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHGMGDFIEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFVLSRQKLKALNEP
                     IFGDVKNGAYLLKESKDAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFE
                     KQDKTYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSK
                     LINFILSK"
     gene            8223..9332
                     /locus_tag="KIL20_000745"
     CDS             8223..9332
                     /locus_tag="KIL20_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaE family lipid ABC transporter permease
                     subunit"
                     /protein_id="HBD2720787.1"
                     /translation="MNANFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKDKNIKITKEGLNSRFQTLFELCEKNYQRLSKTKKSH
                     KNFSEYFIDLGKLSLELLKILIKFTNFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIIIPRVMALVVAMPLIVAISDAISII
                     GGMMVAKLNLDISFAEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVVLTSAGI"
     gene            9333..10055
                     /locus_tag="KIL20_000746"
     CDS             9333..10055
                     /locus_tag="KIL20_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HBD2720788.1"
                     /translation="MVIKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGSSGSGKSVL
                     LKQMLMLEHFDGGEYEILGYKLKNIDEEDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKKFME"
     gene            10058..10948
                     /locus_tag="KIL20_000747"
     CDS             10058..10948
                     /locus_tag="KIL20_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HBD2720789.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEISIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFIQLQGGSKNSKDLVSIHGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKNIKESTMILKNFIKKADEKLNTYDDIKASLMQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
     gene            10948..11547
                     /locus_tag="KIL20_000748"
     CDS             10948..11547
                     /locus_tag="KIL20_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HBD2720790.1"
                     /translation="MLKQIFYIFTFIFILCGCSLKHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANTPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLNADYALESRINSFEQILSNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIRSTYNAFQKALNKIGNEIIFWVNSNLS"
     gene            11603..12103
                     /locus_tag="KIL20_000749"
     CDS             11603..12103
                     /locus_tag="KIL20_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720791.1"
                     /translation="MKSDLEIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELATTITMGETMDNTGIYNSTMD
                     FKNLFK"
BASE COUNT         4549 a         1732 c         2023 g         3883 t
ORIGIN      
        1 ctacaaagaa aaaatccata gtctcgctct aaaaatttta tgccaaatta tagccaaatc
       61 tttgtataat tttaacaagg tttgtaaaat gataactaaa gaaagtatag aaaatttatc
      121 ccaaagactt aatattgttg atattataga aaattatatt gaagtaaaaa aacaaggctc
      181 tagttttgtg tgtatctgtc cttttcatgc agataaaaac ccgtctatgc atatcaatcc
      241 taccaaaggt ttttatcatt gttttgcctg caaggctggt ggagatgctt ttaaatttgt
      301 aatggattat gaaaaattaa gttttgccga tgcagttgaa aaagttgcaa gccttagtaa
      361 ttttactttg agttatacaa aagaaaaaca agaaaataaa aaagagctaa agtctatact
      421 accaagctta aatgcgtatt ttaaagataa tctcaaacac cacaaagaag tcttaaccta
      481 tctttaccaa agagctttaa atgacaaaga tatagccaaa ttcgaattag gttttgcggg
      541 agcaagtgaa gatagtataa gattattgca aaatcaaaaa attcctttag aagatgctat
      601 gagtgttgga gctttaaaaa aagatgaaaa taatgaattt tacgcaagtt ttatatggcg
      661 tatcaccttt ccaatctacg atcataaaga cttattagta gggtttggag ggcgtacttt
      721 aaatcccaat gtaccggcaa agtatgtaaa ttcaccccaa aatatacttt ttgataaaag
      781 tagaattttt tatgctttta acatcgctaa agaaaatata gcccaaaaaa aagaaataat
      841 agtatgtgaa ggctacatgg atgcaatagc ttttcacaaa gcagggttta ataatgctgt
      901 agcagttctt ggaacagcat taaccgaaca tcatctaccc ttaatccgcc gttatgatgc
      961 aaaagtgatt ttatgttttg acaatgatga agcaggatta aaagctgcga cacgatctgc
     1021 atttttatta agcacaaaca aaatagacgg taaagtggca attttgcaag gtggaaaaga
     1081 tcctgctgag ctcgtagcaa aaaatgaaag cacaaaactt catgatatac tcgatgaagg
     1141 aatagagctt ggtgaatttt atatcagacg cttaatatcc actcattcca taatttctgc
     1201 tcttgataaa caaaaagctt tagaaactat acaaaaattc acctttaatc ttgaaccttt
     1261 agtggcaaat tcttacacta gtctagtttc aaatttatta aaagtagatg aaaaatttat
     1321 tgtcttatca caaaattcaa aaaaaaccat acaaacccct ttaatttctc aaaataaata
     1381 caattttcct aaagaaaaaa ttcacattgc agaattagaa cttatagctt ttttaaaaca
     1441 gcatccagat atatgtaacg attttaagca aattagtgat agtgtttgtt ttaagcataa
     1501 aattttattg gataaaattt tagaaaaaaa aggttatgaa gatagtgata ttagagaatt
     1561 tgaaagtaaa aatattcgaa aaaatttaaa ctatagcgaa ttcttgttag gtatttgcaa
     1621 ggttaattta gcttttttaa acaatgtaaa aattaaaaat tctacactcg cattaaaaaa
     1681 acaacttttt acgcttattg ataaaaattt aaatcttcta attaaaaatt taaataccga
     1741 agaattaaat aattttttaa aagaatattt aagcttctta aaatatgaaa aaaacgaaga
     1801 aattctgcaa caatcattta gaaacttaaa tggaattttt agcaacaaaa actttacagc
     1861 ttatgattta ggatttagcg cacaagataa tgacgaacct ttttaattta tttaaatttc
     1921 aagccttaat ttaccttttt ttaaacacaa tcacgctaaa gtatataaaa atttttaagg
     1981 ataaattatg atgcctttta gcgatgaaga gcttataaat cctgttaaag caagtttaga
     2041 aaagagcttg cctatgcttg aacgtgatgg cggagggctt gaatttttag gaattaaaaa
     2101 tggggttgtt tatgtccatt taataggagc ttgtaaaggc tgtgcatcga gtggaacaac
     2161 gctaaaatat ggccttgaaa ggcaacttaa gatcgatatt catccagaaa tcactataat
     2221 caatttaaac ggcggagcag acgaatttgc aaaattataa aaaacttgga attgaacatt
     2281 tttacaagaa agattttaaa actgcaaaaa tgtatttttc tatggcttat gaaaaacgca
     2341 aaaataaacg cttgctaaat tttatctgcc tttgtgatct tgctttaaaa tctcctaaag
     2401 aagcttcttt actttttgat ttttatatag aacattacaa aatctctagc attgataaag
     2461 acttagaaga aattttaagt acaattgaat ttaaaaaaca agaaaacaaa caggaaaatg
     2521 aatttgaaga tgggcatgcg ttaaattatc aagatttttt aaaaagcgaa gaagaacttg
     2581 gctttcaaaa aagttttgaa aatatcatta atagcactaa attagttatt gataatcgtg
     2641 atgatttttt agattttttg gaaaaattac ttgataatgg ctataaagat atgactttaa
     2701 attatataga aaatgttatg cctcattttt gggcaaatga tagatttatc aaactccaag
     2761 aaaaactcat aggatttaaa agtgaaatta aaacttgaaa attcattcat tacagataat
     2821 accttagagt gtgaaaaaga atgctttttt ttacaaacca cacaaaatgc taaatttcac
     2881 gctcaagcct tagaaaaagg tgcaaaaatc attgatgtaa atgagtgtaa aaaactttta
     2941 aaaatcgatg aaaagattca aatcatagga atcacaggaa ccaatggcaa aaccacaacc
     3001 gcagcagcga tttattctat cttattggat ttaggttata aatgcgggct ttgcggaaca
     3061 agaggagctt ttatcaacga tgaacaaatt gatgaaaaat ccttaaccac ctcccctatt
     3121 cttaaaacct tagagtacct acaaatagcc actcaaaaaa aatgtgattt tttcatcatg
     3181 gaagtaagct cacacgcact cgttcaaaac cgtatcgaag gcttaaaatt tgttgctaaa
     3241 atttttacca atatcactca agatcattta gattttcacg gtacttttga aaattacaaa
     3301 gaagcaaaag agcttttttt tacagatgag agtttaaaat ttatcaacaa agatgctttg
     3361 gctattaaat ttaatgtgcg taatgctttt acttatggta tagaaaatcc tgctttatat
     3421 caaatcaaag cttattcttt agaagaaggc attagtgcta ttgcaacaaa taaaaatcaa
     3481 acttttcaca tagactcgcc cttgctagga ctttttaatc tttacaatct tctagttgct
     3541 agtgcttgtg tgaatgaact cgtaaagcct gatttaaaag atttagaaaa agctatcagt
     3601 ggatttggcg gggtttgtgg tagagtagaa caagtagcaa aaggtgtgat cgtagatttt
     3661 gctcatacgc ctgatggcat tgaaaaagta cttgacactc ttaaaaataa aaaactcatc
     3721 gttgtttttg gagcaggtgg agatagagat aaaaccaaac gccctttaat gggaacaatc
     3781 gtcgaacatt ttgcaaaaat tgctatcatt acaagtgata atccacgtag cgaagaacca
     3841 aaaaccatca tggaagaaat tttatcaggc tttgctaaaa aagaaaaagt tttaatgata
     3901 gaagatagaa aagaagctat aaaaaaagct ttagaactaa aagaaaatga cgatttagtc
     3961 gttattttag gcaaaggtga tgaaactact caagaaatta aagggataaa atatcctttt
     4021 agtgataaag tagttgttaa tgaaatttta aaaaatcaag gataatcaat gtttgaaaat
     4081 atggattttt ctaaaatggg cgaactttta aatcaagttc aagaaaaagc aaaaaatata
     4141 gaactagaac ttgcaaatcg tgaatttagc gccaaaagtg gagcaggact tgttaaagta
     4201 agtgctaatg gaaagggtga aattatcgat gttagcattg atgattcttt acttgaagat
     4261 aaagagtcct tgcaaatttt acttatttct gcaattaatg atgttttggc tatggttgcg
     4321 caaaatcgtt ccagtatggc aaatgatgtt ttaggtggtt ttggaggtat gaaattatga
     4381 aaaaaatttt aattatttgc atgcttttta ctttgtcttt tggtatagaa agacctaaat
     4441 ttgaagattt tttagcaggt tatgaaagaa ataaggcaag catgctcaac tatgaaggaa
     4501 tgccagcttt tgcactcagt gaaaatttac ttgctgtgtt aaaacagcct aatactaagc
     4561 ttaacaaata tgtaaaatat gatccatttt taaatttata tcttgtaaga actgacttta
     4621 gcctaatccc tactcctatg ggtgatgaag aaaaacttac tcgtaatgat tgggttggaa
     4681 tttgggatcc taataaacct tatatagggc atattaagta tttagctcaa aatattgacg
     4741 aaaaagatca acttgatttt aattctaaaa taggactttt agggactccg tgctgtgaaa
     4801 tgatggggat tgctttaaat aatagctctt ttataggcaa tcgctattta aaacatttta
     4861 tgaaatataa cgatgcttat tggggggata ttggcgttga ttttgttgtt cgagaaaata
     4921 aaatttatgt taacaatgta agaaaaaatc cacaattttt aatcaacgat caagttataa
     4981 gtgttgatgg cttgcccgcc aatgatttaa gaaaactcaa tgaaaaaatt ctttttgcag
     5041 atcgcggaag cactctttat tttcaagtgt tgcgtgataa tatggattta aatatttcta
     5101 ctgaagtttt tgcaaaagat ttgagcaaat ttaatcttcc tgattctaaa ccaaaaccaa
     5161 aaattacaaa tttcacaagc aatcttggtt taacggttaa tactagtctt gttgtaacta
     5221 aaatagatcc aaaatcaaaa gcatcaaatg caggatttat ggtaggagat aaaattttac
     5281 gcgttaataa tattatttta aataatttta aagaattaca aaatatttta agcgctggta
     5341 atgactttag catcttgatt gaacgcaaaa gtactaaatt acctttatca aatttcaaca
     5401 atgaactagg cggaaatgcc aactcaggtg gcgacggtaa atttcaattt ttcataaggc
     5461 ttactaagtg aatttaaaag aactttttat ccatcactta gaaaaaaatc tacctaaagt
     5521 tgaaagtttt catccttttt ttaatgaagc tttagccctt atgctaaaag caggaggaaa
     5581 gcattttcgt gcacaattgc ttttaagcgt agtacaaagc aataaacctg aacttttaaa
     5641 tcaagcttta gatgtggctt tagctttgga atttatccat acttattcac tcatacatga
     5701 tgatttaccc gctatggata atgcggattt tagacgagga attccaacct tacacaaaag
     5761 ctacgatgaa actacagcca tcttagtggg tgatgcttta aatactgaag cttttttagt
     5821 tctaagtcat gctcatttaa aagatgaaat caaaatcaaa ctcatcaaaa cccttgcctt
     5881 taatgcagga cttaatggaa tggtcatagg acaagctatt gattgtttct ttgaagacaa
     5941 aagactgagt ttaaatgaac ttgagttttt acatacacac aaaaccgcaa gattaatcgc
     6001 tgcagcttta aaaatgggtt gtgaaatttg cgaacttaac aacgaagaaa gcaatcaaat
     6061 ttacaaactt ggtttaaaac taggactgat ttttcaaatc aatgatgata ttatcgatgt
     6121 aactacaagt caagaacaaa gcggaaagcc tactaacaac gatactcata aaaattcttt
     6181 tgtcaattta cttggacttg aacaagccat aaaaacaaaa gaaaatcttc ttagtgaatg
     6241 tgaacaagac ttagaaaaac ttaatgaaaa actcgcgcaa atgatacaaa atttaataat
     6301 tcaatactta taaaggcaaa aaatggacat tcaaatttta caagaacagg caaatactct
     6361 aagattttta agtgccgata tggtgcaaaa agcaaactca ggacacccag gtgcaccttt
     6421 gggtttagca gatattttaa gtgttttaag ttatcattta aaacacaatc ctaaaaatcc
     6481 cacttggcta aaccgtgata gacttgtatt ttcaggcgga catgcaagtg ctttgcttta
     6541 tagtttttta catttaagtg gctatgattt aagcttagaa gatcttaaaa atttccgcca
     6601 acttcattct aaaaccccag gacaccctga aatttcaact cttggagtag aaatcgctac
     6661 aggcccttta ggacaaggcg ttgcaaacgc tgtaggcttt gctatggcag caaaaaaagc
     6721 gcaaaatttg ctaggtagtg atttaatcga tcataaaatt tattgtcttt gcggagatgg
     6781 ggatttacaa gaaggcattt cttatgaagc ttgttcttta gcaggacttc acaaacttga
     6841 taatttcata cttatttatg atagcaacaa tatctccata gaaggcgatg taggtttagc
     6901 ctttaacgaa aatgtaaaaa tgcgttttga agcacaagga tttgaagttt taagtataaa
     6961 tggacacgat tatgaagaaa ttaataaagc cttagaacaa gctaaaaaat ccacaaaacc
     7021 ttgtcttatc atcgcaaaaa caactatagc aaagggtgca ggagagcttg aaggcagtca
     7081 taaaagccat ggcgcacctt tgggcgaaga agtgattaaa aaagccaaag aacaagcagg
     7141 ttttgatcca aatatcagtt ttcatatccc acaagcaagc aaaatccgct ttgaaagtgc
     7201 tgtagaactt ggggatttag aagaagcaaa atggaaagat aaacttgaaa aaagtggtaa
     7261 aaaagaactt ttagaaaggc tattaaaccc tgattttagc aagatagctt atcctgattt
     7321 taaaggaaaa gatcttgcta caagagatag caatggtgaa attttaaatg ttttagctaa
     7381 aaatttagaa ggatttttag gtggaagtgc ggatttaggc ccttcaaata aaacagaact
     7441 tcacggtatg ggagacttta tagaaggtaa aaatatccat tttggcatca gagaacacgc
     7501 tatggcagcg attaacaatg cttttgcaag atatggaatt ttcttaccat tttcggcaac
     7561 ttttttcatc tttagtgagt acttaaaacc tgccgcaaga atagcagccc taatgaaaat
     7621 caaacatttt tttattttca cgcatgatag cataggcgtg ggcgaagatg gcccaacaca
     7681 ccagcctata gaacaactta gcacttttag agctatgcca aattttttaa cctttaggcc
     7741 tgctgatggg gtagaaaatg tcaaagcttg gcaaatagcc ctaaatgctg atattccaag
     7801 tgcttttgtg ctttcacgcc aaaaactcaa agctctaaat gaacctattt ttggagatgt
     7861 aaaaaacgga gcgtatttac tcaaagaaag caaagacgct aaatttacac ttctagcaag
     7921 tggaagtgaa gtttggcttt gtctagaaag tgcaaacgaa cttgaaaaac aaggttttgc
     7981 ttgtaatgtt gtttctatgc cttgttttga actttttgaa aaacaagata aaacttatca
     8041 agaaagattg ttaaaaggtg aagttatagg cgttgaagca gcgcattcta atgaacttta
     8101 taaattttgc cacaaagtgt atggcataga aagttttgga gaaagtggta aagacaaaga
     8161 tgtgtttgaa cactttggat ttagtgtttc aaagcttata aattttatcc ttagcaaata
     8221 aaatgaatgc aaatttcaaa tttcaaaata acactctttt tatctttgga atttgggata
     8281 aaacaagtat ttataagtta aaaataaaag attttttagc tttgattcaa agcaaggaag
     8341 tgatttttga ttttaaagat ctaaaagcaa tcgataccgc tggagtaaga tttttccttg
     8401 ctttggaaaa tgaccttaaa gataaaaata ttaaaatcac caaagaaggc ttaaattcac
     8461 gctttcaaac cctttttgaa ctttgtgaaa aaaactacca aagactaagt aaaacaaaaa
     8521 aatcacataa aaatttcagt gaatatttta tcgatcttgg aaaattaagt ttagaacttt
     8581 taaaaatttt aataaaattc accaatttca caggagcttt tttcacaagt ctttttttat
     8641 gccttaaaaa tcctaaaaat tttcgcttta ttgctttttt atatcatata gaaaattctg
     8701 cttttaaagc tttgcctata gttattttaa ccgctctttt agtaggagtg gttttagcct
     8761 atcaggctgc ttatcaactc gcacaatttg gagccaatat tttcatagtg gatttgatgg
     8821 gaatttcagc cactagagaa cttgcacctt taatcgctgc catagtgatc gcaggaagaa
     8881 gtgcaagttc ttataccgca caaattggag tgatgaaaat cactgatgaa attgcagcta
     8941 tgaatactat gggttttcgt tcttttgaat ttattattat tccgcgtgtt atggctttgg
     9001 tagtggctat gcctttaatc gttgccatta gcgatgcgat cagtattata ggtggaatga
     9061 tggttgcaaa attaaatctt gatatttctt ttgccgaatt tttaagacgc tttagagaag
     9121 ctgtagatat aaaacatatc tttataggac ttgcaaaggc acctattttt ggatttttaa
     9181 taggacttat tgcttgtttt cgtggttttg aggtaaaaaa cactacacaa agcataggaa
     9241 tttatacaac aaaaagcgtt gtaaatgcta ttttttgggt gatagctttt gatgctttat
     9301 tctctgttgt tttaacttct gcaggaattt aaatggttat taaagcgcaa aatatcatta
     9361 caaaatttgg agaaaaaatt gtccatgatg gcgtaagttt tgaaatcaaa aaaaatgaaa
     9421 tttttggtat tttaggaagt agtggaagtg gaaaatccgt ccttttaaaa caaatgctta
     9481 tgcttgaaca ttttgatggt ggagaatatg aaattttagg ctataaactt aaaaatatcg
     9541 acgaagaaga tgcacttgct ttgcgtaaaa aatggggtgt ggtttttcag tttgctgcac
     9601 tttttagctt ttttaatgtt tatgaaaata tcgctattcc tttaaaagaa tacactcatt
     9661 tagatgaaaa tagcatacaa gaactggttt taatgaagct aaaaatggta ggcttaaacg
     9721 aaagtgtttt aaaacaattt ccaagcgaac ttagtggcgg tatgcaaaaa agagtggcaa
     9781 ttgctagagc tttagcactt gatagtaaat tgcttttttt agatgaacct acttcaggac
     9841 ttgaccctca tagtagtcgc gaatttgacg atttggtttt agagttaaaa aaaagttttg
     9901 atttaaatat cattttggtt acacatgata aagaaagtat gaaaaattta ctcgatcgct
     9961 ttatcatttt agaaaataaa aaagttggat tttgcggtac ttacgaagaa ttgcgcttgc
    10021 aaaatgaacg actttttaaa aaatttatgg agtaaaagtg gaaaatagag caaattattt
    10081 ttttgtagga ctttttgttt ttggagtatt ttttgcaagt cttggtttca tactttggct
    10141 tgggggatac tccaaagaag aaagttttaa gtattatgaa attcacacac aagaatccgt
    10201 tgcaggactt ggtataaaag cacccgtaag gcttttgggc gtggaagtag gtagcgtgga
    10261 agaaatcagc atttacaatc aagatgaact cggcgttaat atacgcatca aggtcaaaaa
    10321 caatacccct ataaaagaag acacctttgc tactttacaa cttcaaggta tcacaggact
    10381 taaatttatc caacttcaag gcggaagtaa aaatagtaaa gatctagtat ctatccacgg
    10441 aaaacttcca gtcattcctt ttaaagaaag ttttttagca accatagaca gacaaagtga
    10501 acatattttt tctttggtta aaacggccga tgataaatca aaagaacttt taagcgaaaa
    10561 aaatcttaaa aatctagaaa tccttttgca aaatctagca gaattaagtg caaatttaaa
    10621 cgctaattct aaaaatttaa gtcttaatct ttcaaacgca agtttaaaaa taggaaaaat
    10681 ggctgataat ataagcctta gtgcgcaaaa tttcaactcc agtcttaaaa acataaaaga
    10741 aagcacaatg attttaaaaa atttcataaa aaaagctgat gaaaaattaa acacttatga
    10801 tgatattaaa gcatctttga tgcaaaattt agaacttttt aaacgggttt taattgaaag
    10861 caatattcta atagaaaatt tacaaaacag ccctgctgat ttgattttta aagaaactaa
    10921 acctaaactt ggaccaggag aaaaataatg ctaaagcaaa tattctatat ttttactttt
    10981 atttttatat tatgcggatg ctctttaaaa cacgaaacca tcaataaaaa tgaaaatatc
    11041 atattaaaag atgaaggaat agactcaaat atttttttta aaaaaaccgg taaaattctt
    11101 aaaattcgca atgcaaatac acctttgtat ttaaactcaa gagctattgt ttatatagat
    11161 aatggtttta gcaacaaata tgcacattat ttctggggag atttgccaag caatctttat
    11221 tcttttttaa ttttgtcaaa atttgaacaa agcaatattt ttacaacctt actttcttca
    11281 acaagctctt taaatgcgga ttatgccctt gagagcagga ttaattcttt tgagcaaatt
    11341 cttagcaaca atgaaaacta cgctcaaatt tctataagtg taaatttcat aaatcttgaa
    11401 aacaatcaga taatagctca taaaattttc aatactaaag aaaaaataga aaaaaaagat
    11461 atccgctcta cttataatgc ttttcaaaaa gccttgaata aaattggcaa tgagattatt
    11521 ttttgggtaa attctaactt atcctaattt aggaacactt tttgcttttt aaatatttag
    11581 caatattttt gaaaggtaaa caatgaaaag tgatttagaa atatttaaaa aacacttagg
    11641 cgaaattcaa ggcgtgaatg aatttaaagc aaatcaaatt tgctctcaaa tcaatgatgc
    11701 aaatgatttt ataggagcac ttcaagtgct tgatatgtct ttaaaaaaaa tagaaaaaag
    11761 cattctagaa agaatagatg aaaattcaga tgatatgcaa aaaagaactc ttgatgccac
    11821 agcatcacaa cttatacaaa actgctcttt catgggaaca gccctttttg gaaatatttt
    11881 caatgtttat gttggtaaaa aactttttga atttgaaatt gctaatccac ttttaattct
    11941 tcaaacaagt aattacgaag gtgtattggc ctatatacaa gataaaagag atgaaataaa
    12001 aatcattcta tcagagttag caaccacaat taccatgggc gaaactatgg ataatactgg
    12061 aatttataac tctacaatgg attttaaaaa tttatttaaa taagaatagt aatcgtttgt
    12121 tctctttaag caaatataat atattttagc ttaaagagat tttccaaact cttaaaagag
    12181 agttagg
//
LOCUS       DAEBKH010000039        11792 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.039, whole genome shotgun sequence.
ACCESSION   DAEBKH010000039 DAEBKH010000000
VERSION     DAEBKH010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11792
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.039"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            6..686
                     /gene="ung"
                     /locus_tag="KIL20_000750"
     CDS             6..686
                     /gene="ung"
                     /locus_tag="KIL20_000750"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006801829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HBD2720792.1"
                     /translation="MNIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQNIIIYP
                     PANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNVFKELQ
                     NDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHKLSNEK
                     SGLVFMLWGNYAKNKEILIDNAKHLILKAAHPSPLARTGFLGCKHFSKANEFLKKVGK
                     IPIDWKIV"
     gene            806..1501
                     /locus_tag="KIL20_000751"
     CDS             806..1501
                     /locus_tag="KIL20_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HBD2720793.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVN
                     FEEIENLQSQDKWQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPIL
                     HIAKSSAKALKQENIQKIGLLGTKYTMTQDFYKKILIEENISVITPSDEDIKIVNDII
                     FNELCKGEIKQDSKEKYLNIINKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLI
                     HALDAANEALKDL"
     gene            complement(1695..2819)
                     /gene="cydB"
                     /locus_tag="KIL20_000752"
     CDS             complement(1695..2819)
                     /gene="cydB"
                     /locus_tag="KIL20_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HBD2720794.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMINSILFL
                     PFFLGFLAWIFLKDGFSVDANGVVSMSANLYLYNFLNQMIFAILLAIGVILVLLGMVQ
                     GAKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLNDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(2819..4381)
                     /locus_tag="KIL20_000753"
     CDS             complement(2819..4381)
                     /locus_tag="KIL20_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HBD2720795.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQNFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMENHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIILTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            complement(4382..4615)
                     /locus_tag="KIL20_000754"
     CDS             complement(4382..4615)
                     /locus_tag="KIL20_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HBD2720796.1"
                     /translation="MYLKHLYFSISQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVI
                     LKLFVFDVNFNSIFKSDKEKSTFVLKNLTLEGK"
     gene            4729..5535
                     /gene="cdtA"
                     /locus_tag="KIL20_000755"
     CDS             4729..5535
                     /gene="cdtA"
                     /locus_tag="KIL20_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HBD2720797.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNAVNGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            5532..6329
                     /gene="cdtB"
                     /locus_tag="KIL20_000756"
     CDS             5532..6329
                     /gene="cdtB"
                     /locus_tag="KIL20_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HBD2720798.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRTQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            6340..6909
                     /gene="cdtC"
                     /locus_tag="KIL20_000757"
     CDS             6340..6909
                     /gene="cdtC"
                     /locus_tag="KIL20_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HBD2720799.1"
                     /translation="MKKIITLFFMFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPNFFAEVNELMIITPPLTAATPLE"
     gene            7081..8763
                     /locus_tag="KIL20_000758"
     CDS             7081..8763
                     /locus_tag="KIL20_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HBD2720800.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGVKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTIFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIICIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSVTGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWATLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIVLIGIWTCIIAFFLQGIIPEVIVK"
     gene            8883..9623
                     /locus_tag="KIL20_000759"
     CDS             8883..9623
                     /locus_tag="KIL20_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HBD2720801.1"
                     /translation="MMKKVYFYATCLGTAAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKV
                     KDFSSRVIELSQYLDEVLKVDYEDKGAPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGERL"
     gene            9620..11059
                     /locus_tag="KIL20_000760"
     CDS             9620..11059
                     /locus_tag="KIL20_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HBD2720802.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANKVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWAVQNFANVLPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            11052..11708
                     /locus_tag="KIL20_000761"
     CDS             11052..11708
                     /locus_tag="KIL20_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HBD2720803.1"
                     /translation="MSKIDEISSKSKASILEHLKKAYKETDFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYGFKSMIYGADLNLDLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCVVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIIIY
                     "
BASE COUNT         4228 a         1853 c         1912 g         3799 t
ORIGIN      
        1 ttacaataaa catagataag attaaaataa atgatgactg gaaagaattt ttaagagacg
       61 aatttcaaaa aaaatatttt ctagaaatca aaaaacaata cctaaatgcg attaatcaaa
      121 atataattat ttatccacct gcaaatttaa tctttaatgc ttttaattta tgtcctttaa
      181 aagaaattaa aattattatc ctaggacaag atccttatca tcaaccaaat caagcaatgg
      241 ggcttagttt ttcggttcca aaaaatgtaa aaatcccacc aagtcttaat aatgttttta
      301 aagaattgca aaatgattta aacatcaccc cagcaaaaag cggagattta agctcttggg
      361 caaaacaagg agttttgctc ttaaattcta ttcttagcgt tgaagcaaat aaagcagcta
      421 gccatagttc gtggggttgg caagaattta gtgatgctat aatacataaa ttaagcaatg
      481 aaaaatcagg gcttgttttt atgctttggg gaaattacgc aaaaaacaag gagattttga
      541 ttgataatgc taagcatttg attttaaaag cagcccaccc aagcccttta gctagaacag
      601 gatttttagg ttgtaagcat ttttcaaagg ctaatgaatt tttaaaaaaa gttggtaaaa
      661 ttcctataga ttggaaaata gtttaaaaaa ttattttaaa ttttaataaa aatattaaaa
      721 tatatttatt tatttaaaaa taaatcatat ttctatgaaa tatattgtaa taaaataact
      781 caaaaattaa ttcttaagga gaaaaatgaa aaccattggt attataggcg gaatgagttt
      841 tgaaagcact attacttatt ataaaacaat aaatcaagct ataaatgata aattaaaatc
      901 tttaaattct gcaaaaattt tactttacag tgttaatttt gaagaaatag aaaatttaca
      961 aagccaagat aaatggcaag aagctgcaca aattttgact caatgtgcta aaaaattaga
     1021 acttgcaggg gctaatttta taataattgc aactaatact atgcataagg tttttgatga
     1081 aattcaacaa aatataaata tccctatttt gcatattgca aaaagttctg ctaaggcttt
     1141 aaaacaagaa aacatacaaa aaattggttt attgggtact aaatacacaa tgacgcagga
     1201 tttttataaa aaaatactga ttgaagaaaa tattagcgtt attactccta gtgatgaaga
     1261 tataaaaatc gttaatgata ttatttttaa tgagctttgc aaaggtgaaa tcaagcaaga
     1321 ttctaaagaa aaatatttaa atattataaa taaactacaa gaaaaagggg caaagggagt
     1381 acttttagct tgcactgaaa ttggtttatt aatatccaaa aatgatacaa atatcaaaat
     1441 ttttgataca agccttattc acgcccttga tgctgccaat gaagctttaa aagatttatg
     1501 attaaaagat gctcaaaaat gggcaaattg caatattttg aaaagattta tacttatatc
     1561 ggtttaaatc ttatcttgct ttatagtttg ctatcttttt ctaattgatt gatatttagc
     1621 attataaatt tatagcttag ataaattact aaaggccaag ccaataaaaa caaagcatgt
     1681 aacatttttt ctccttaata tgcgtgatca tcgtttgcga tttcttcgcg tgtgattttt
     1741 actttatcca ttgcattcca aacatagata atataagcta aaacaaaagg tacaagtaaa
     1801 gatacataag ccatgacgct tagagtataa tagcttgaac ttgcattttt taaagttaaa
     1861 gaactttgca aatcatttaa agatgggtaa aaagcacttt gacctaaacc aatgcttgat
     1921 aataaagcaa aaaccgttaa aaccgttcca agtcctaggg taaaaatagc tttagagcaa
     1981 ccttttgctc cttgaaccat acctaaaagc actaaaatca caccgatagc aagcaagata
     2041 gcaaaaatca tttgatttaa gaaattatat aaatacaaat tcgcactcat gcttacaact
     2101 ccattggcat ctacgctaaa accatctttt aaaaaaatcc acgctaaaaa acctaagaaa
     2161 aaaggtaaaa ataaaatact attgatcata agttttttca tagctcttat tttgatattc
     2221 tcatcattga tattgttcat aaaatacgct gcgcctaaaa gtcttgctaa aaatactaaa
     2281 gctaagccta agagataatt aaaaggattg agtaaaagtt ctaagccgtg caaagggttt
     2341 tgccaagaaa caaaattatg ctcatttaag ataaattcag aaccgctaaa aaagctactt
     2401 actgcaactc cgattaaaaa tacacctaaa taaccattga ttttaagaaa aatttcatag
     2461 gttttagagc cataaacatt attttctttt ttacgatact cataagccac agcttgtaaa
     2521 ataaaacaaa ataaaataca aagccaagcc caataagctc cgccaaaact tgtactataa
     2581 aaaagtggaa aagctgcaaa agctgctccg ccaaaaagca cgagagttgt aaaaccaagc
     2641 tcccatttac gccctaaaga attgactagc atggtttttt caagctcatc cttgctaagc
     2701 tcatcgatta aagtctgtcc accttggaca aaaaacataa aaaccaaaag tccgccgagc
     2761 aaacttaaaa tcaaccacca ataaatttgc aaaccttcaa gttctaaacc aaaaaacatt
     2821 atttttctcc tttgcccata agtggagtat gtcctgcatg tgcgtcaaaa ccttttttaa
     2881 tctgagtaag tatgatttta acttctgcaa tcaataaggc tgtaaaaagt actgcaaaaa
     2941 tccaaaatga aatttgaaca ttgacttttc caagttgtgt tgctgcgata tgtacgggaa
     3001 gtaagtcttg aattgcccaa ggttgtctgc ctacttcagc aacaatccag cctgcttcag
     3061 cggcgatata acccaatgga atggataaca aacacaccca aagtactttt ctaaatttct
     3121 caatatcatt tgccatagta agataaagtg taacgatgaa aagtaaaaag aaaaaacttc
     3181 ctaaagcaac catgatgtga aagctataaa aagttaaagc cacaggcgga atagtatcac
     3241 ttggtttttc taaatatcca taaccaaaat ctttaaaatg agtttctaaa atggatttgt
     3301 gattttccat agctattgta tcattgtttt ctttagcaag tttatagtct tttagagctt
     3361 gtatagcgat ttttcctcta tcgatacgat tttgcatagg ttctatacct ttactttcat
     3421 ttccatagat caaatcttca attcctggaa caaaagaatt tggatcacgg tttcctagta
     3481 tagaaagagc gtaaggtata gtaatgtcaa ataaaaacac actttcgtta ttatctatgg
     3541 tttttttagg atttaaaatt ccaaaaggca caagccctgc acgatgttca ccttgataaa
     3601 ccccttccat agctgcaagt ttcataggtt gagtttgagt tacacgataa gcactttcat
     3661 ctccactgaa aaataaaaag attgaacaaa ccaaaccaaa actagctcct acaactaagc
     3721 tttttttagc ctcgataata tggcgtccct ttaacataaa ccaagctgaa attcccatta
     3781 caaataaagc tgaaatcaca taaccactgc ctatggtatg taaaaatttt gaaatagcta
     3841 caggagaaag cgctacttca aaaaagtttt gcatttcatt tcttgctgta tcagggttaa
     3901 agctcattcc tacaggatat tgcatccaac catttgccac taaaatccaa aaagcagaaa
     3961 gattgcttcc tatagccaca caccaagttg aaagtaagtg aaaaccctta cttactttat
     4021 cccagccaaa aaacataact gcaaaaaaag tagcctctaa gaaaaatgcc ataatacctt
     4081 caaccgccaa aggtgcacca aaaatatcgc ccacaaacca gctataattt gcccagtttg
     4141 ttccaaattc aaattccatt ataatacctg tagctacacc gatagcaaaa tttatggcaa
     4201 ataatgaaag ccaaaatttg gtgatttttt tccatctttc atttttggtt tttacataga
     4261 tggtttccat gatagcaatc ataaaagaca agcctaaggt taaaggcaca aacaaaaaat
     4321 gataaagtgc agttaaagca aactgcgctc ttgaccaatc aacgctacta agttcgttca
     4381 tttattttcc ttcgagtgta agatttttga gtacaaaagt gcttttttct ttgtcgcttt
     4441 taaaaataga attaaaattt acatcaaaaa caaaaagttt taaaatcaca aacataacaa
     4501 aaagtttgat aaagataatt ttccaaagag tttttccaag agttaaattt ttaaaacctt
     4561 ctttgtaaaa attaaaaatt tgagagatac taaaatataa gtgtttaaga tacatgataa
     4621 ttctaccttt aaaaacaaca aaaataaaac atttttaaaa agcgaaaaat tataatgaaa
     4681 tttatgttat tattttctta aaaatttaaa tacatatcaa ggtttttaat gcaaaaaatt
     4741 atagttttta ttttatgttg ttttatgact ttttttcttt atgcatgttc ttctaaattt
     4801 gaaaatgtaa atcctttggg gcgttcattt ggagaatttg aagatactga tcctttaaaa
     4861 ctaggacttg aacctacttt tcctaccaat caagaaattc caagtttaat tagcggtgct
     4921 gatttagtac ctattactcc tattacccca cctttaacta gaacaagcaa tagtgccaac
     4981 aataatgcag taaatgggat caatcctcgc tttaaagacg aagcttttaa tgatgtttta
     5041 atttttgaaa atcgccctgc ggtttctgat tttttaacca ttttaggccc tagcggagca
     5101 gctttaacgg tttgggcttt agcacaagga aattggattt ggggctatac tttaatcgat
     5161 agtaaaggat ttggcgatgc tagagtttgg caacttttgc tttatcctaa tgattttgca
     5221 atgattaaaa atgccaaaac caatacttgt cttaatgctt atggtaatgg aattgtccat
     5281 tatccttgcg atgcaagcaa tcacgcacaa atgtggaaac ttatccctat gagcaataca
     5341 gcggttcaaa ttaaaaattt aggaaatgga aaatgcatac aagcacctat tacaaatctt
     5401 tatggtgatt ttcacaaggt ttttaaaatt tttaccgtag agtgtgcaaa aaaagataat
     5461 tttgatcaac aatggttttt aaccactccg ccttttaccg caaaaccttt atatcgccaa
     5521 ggagaggtac gatgaaaaaa attatatgtt tatttttatc ttttaacctt gcttttgcaa
     5581 atttagaaaa ttttaatgtt ggcacttgga atttgcaagg ctcatccgca gccacagaaa
     5641 gcaaatggag tgttagcgta agacaacttg taagtggagc aaacccctta gatatcttaa
     5701 tgatacaaga agcaggaact ttaccaagaa cagccactcc aacaggacgc catgtgcaac
     5761 aaggtggaac acctattgat gaatatgagt ggaatttggg aactctttca aggcctgata
     5821 gggtttttat ttattattct cgcgttgatg taggagctaa tcgtgtaaat ttagctatag
     5881 tttcaagaac gcaagctgaa gaagtgattg ttttacctcc acctactaca gtttcaagac
     5941 ctattatagg aattcgcaat ggaaatgatg cttttttcaa tatccatgct ttagccaatg
     6001 gaggaacaga tgtaggagca attatcacag ctgtagatgc acattttgca aatatgcctc
     6061 aagttaactg gatgatagca ggggatttta accgtgatcc ttctactata acaagtacag
     6121 tggatagaga attagcaaat agaattagag tggtttttcc aactagtgca actcaagcaa
     6181 gcggagggac tcttgattat gcaattacag gaaattcaaa cagacaacaa acctatactc
     6241 caccgctttt agctgcgatt ttaatgcttg caagtttaag atctcatata gtttcggatc
     6301 attttccagt aaattttaga aaattttagg acatttaata tgaaaaaaat tattactttg
     6361 ttttttatgt ttataacttt agcctttgca actcctactg gagatttgaa agattttacc
     6421 gaaatggttt ctataagaag cttagaaacg ggaatttttt taagcgcctt tagggatacc
     6481 tcaaaagatc ctattgatca aaattggaat attaaagaaa ttgttttaag cgacgagtta
     6541 aaacaaaaag ataaattagc tgatgaactt ccttttggtt atgtgcaatt tacaaatcca
     6601 aaggaaagcg atctttgttt ggctatctta gaagatggaa cctttggagc aaaatcttgt
     6661 caagatgatc taaaagatgg taaattagaa actgtatttt ctataatgcc aacaacaact
     6721 tcagctgtgc aaattcgttc tttagttttg gaatctgatg aatgtatagt aacttttttt
     6781 aatccaaata ttcctataca aaaacgcttt ggaatagccc cttgcaccct agatcctaat
     6841 ttttttgctg aagtaaatga actaatgatt ataaccccac ctttaacagc tgctacccct
     6901 ttagaataag atttttatct tgttctattt ttatatttat ttaatattta tgatattact
     6961 aaaatacaca aaataattaa taacaataca atgtaattta ctttgctcta taattttttt
     7021 attttaattt aattttttgt tacaataaat ttatacataa taattatcaa ggaggaaaaa
     7081 ttggaacaaa ttttaacatg gcaacaaatt tatgaccctt tttcaaacat ttggctaagt
     7141 gctttagtag catttttacc tatactatgt tttttagttt gtttggttgt tttaaaactt
     7201 aaaggctatc aagcaggttt tttaactgtt atacttgcta ctttggtagc tttatttgcc
     7261 tataaaatgc cttggaattt ggtgggtgca agttttattc aaggctttac aaatggtatg
     7321 tggcctatag cttggattat catcgcggca atctttcttt acaaactttc tatcaagtca
     7381 ggttcttttg aaatcattaa aaaaagcgtg atgagtatta ctccagatca tagaattcaa
     7441 gtgattttaa taggtttttg ttttggttca tttttagagg gtgctatagg ttttggtggt
     7501 cctgtggcta taactgctgc acttttagta ggacttggct tgcgtccttt gcaagctgca
     7561 gggctttgtc ttatcgcaaa tactgctcct gttgcttttg gtgcggtggg aattcctatt
     7621 attgctatgg caaatcttgt tggcatagaa cagcattcag tttctgccat ggtaggtaga
     7681 atgctagttc ctttaagcct tactatacct tttttcatag tttttttaat ggatggattt
     7741 aaaggcgtta aagaaacttt tccagctatt ttagttgcgg cgctaagttt tacaactact
     7801 caatttttaa gctcaaatca cttaggagcg gaattgcctg atattatttc agctgtggtt
     7861 tctttagcgg ttacaactat atttttaaaa ttttggaaac caaaaaatat ttttagattt
     7921 gataatgaaa gcaatttcac tcaagataac accctaagtt ttaatcaaat tttaaaagct
     7981 tggtcacctt ttattttact cattatttgt attatcattt ggacacaacc ttggtttaaa
     8041 gctctttttg ataaagatgg tattttaagt tatacaagca ttactttaca atttagtaat
     8101 atcacaactg gaattttaag tccttcagtt actggcatag gagaagctaa gcctttatct
     8161 ttggccttgg gtgtagattt aatcaatgga aaaaccgtag ctcaagcagg aacagcaatt
     8221 ttacttgccg cttttctaac tatagctatt ttaaaaatca aagccgaaga tgctgcagaa
     8281 tgcttttggg ctactttaaa agaaatggcc ataccttgta tcactatagg tttagttgtg
     8341 gcttttgctt tcatttctaa aaatagcggt atgagcacta ccttagggct tgcttttgca
     8401 cacacaggcg atgctttttc tttcttttca ccaatcattg gttggatagg ggtattttta
     8461 acaggctctg atacaagtgc taatttactt tttggaacct tgcaacaagt aagcgctcaa
     8521 aaactaggta ttagtgaagc tttattttta gcagctaatt cagtaggtgg agtcgttgga
     8581 aagatgatca gtccgcaaag cattgctata gcttgcgcgg cggttggact tgtaggaaaa
     8641 gaatctgatc ttttcaaatt cacattaaaa tattctgtag cttttattgt tttaatagga
     8701 atttggactt gcattatagc ttttttctta caaggaatca tccctgaagt tatagtgaaa
     8761 taattaaaaa tttaagtttt atttcaacaa atattcgttt ttagaatatt tgttggaaat
     8821 tttactttgc ttttattttt acaggattag aatatttatc ctaaattatc ccaaaaggag
     8881 agatgatgaa aaaggtgtat ttttacgcca catgcttagg aactgctgct atgcaacaaa
     8941 gcgttttaaa tgcaataaaa cttttaaggc gtgaaggtat tgaagtgatt tttaaaaaaa
     9001 atcaaacctg ttgtgctcaa ccttctttta actcaggtta tttcgatgaa agtcgtgaga
     9061 ttgctttata taatgtagat ttatttgata aagattatcc catcgttgtg ccaagtggtt
     9121 cttgtgcggg tatgatgagt catgactata aagaactttt taaaaacaga cctgaatttt
     9181 ctaaagtcaa agattttagc tctagggtta tagaactttc acaatacctt gatgaagttt
     9241 taaaagtaga ttatgaagat aaaggtgcac ctataaaagt aacttggcat tctaattgcc
     9301 atgctttaag agtgcaaaaa agcatacaag caagcaagaa tcttatcaaa aaactaaaaa
     9361 atgtagaatt agtagaactt caatacgaag aagaatgttg tggttttggc ggaacttttt
     9421 cagtaaaaga gcctgaaatt tcaaatgcta tggtaagaag taaaattaaa gatatacaaa
     9481 atagcggtgc aaaatatctc atcagtggcg atggaggttg tcttttaaat atagatggta
     9541 ccatgaaaag aatgggttta gatataaaag gcatacattt atatgacttt ttacttaaac
     9601 gcttagaagg agaaagacta tgagtcaaaa aattcctcac gaacaaatcg ttcaaattaa
     9661 actcaatgac aagcaaatgc aagaaaattt aatgactgcc atgcatactt tacaaaaaaa
     9721 tagactcaat gttattgatg ctagatttaa agactggcag ggtttaagag ctaaagctaa
     9781 acaagctaaa aacaatgcct taatgagttt agaagaaagg cttttagaat ttgaaaaaaa
     9841 tgctacaaaa aatggcatta aagtgcattg ggcaagtagt gatgaagatg cctgtgaaat
     9901 cgtctatgaa atcatgaaag aaaaaaatat taccaagctt ttaaaaggta aatctatggc
     9961 aagcgaagaa ataggcctaa atcactacct agaaaaaaaa ggtttaaaag ctatagaaac
    10021 cgatcttgga gagcttattt tacagcttaa tgaagagcct cctttacata tagttgtacc
    10081 tgctatacat agaaaccgcc atgaaatcgg agaaattttc aaagaaaaat taggagcaaa
    10141 tttagaaaac gatgaacctg aaagtttaaa tgcggtagct agagaacatt taagaaaaga
    10201 ttttgaaggc ttaaaacttg gacttagtgg ggtcaatttt gccatgtcaa gagaaggagc
    10261 tttttggctt atagaaaatg aaggaaacgg tagaatgtgc actacagcac ctgatattca
    10321 tatcgcactt tgtggcatag aaaaagtcat ggaaagcttt gaagatgcgg ctactatggt
    10381 ttctttactc actccttcag ccacaggaca atttatacca acttataaca atatcattac
    10441 aggccctaga aaaaatgggg atttagatgg ccctaaagaa gtacatgtga ttttatttga
    10501 tcacaatcgt tctaaaatgc tagctcatga ggattattac gaagctttgc gttgtattcg
    10561 atgcggggct tgtatgaatt tttgccctgt ttatgatcaa atcggcggac atgcctatca
    10621 aaccacttat ccaggaccta taggagaagt aatcagtcct aatatttttg gcatagatca
    10681 tacaggagat attttgaatt tctgttcact ttgtgggcgt tgttctgaag tttgtccagt
    10741 gcaaattcct ttggctgatc ttattcgcaa attaagatgc gataaaatag gacaaggtaa
    10801 aaatccacct ttaggagcaa acaaagttca tcacaatgcc ctagaagcct ttgcttttaa
    10861 acaatttaaa aatatcgcaa ccaatggcga taaatggcgt ttttcacttt caaaagcaca
    10921 ttatttcaac tgggcagtgc aaaatttcgc aaacgttttg cctgtgatta aaaaatggta
    10981 cgcttttaaa gaattacctc aaattaaaat ggatctttat aaagaagtgc aaaaactaga
    11041 aggagtaagc tatgagtaaa atcgatgaaa tttcaagcaa aagtaaagca agtattttag
    11101 aacatcttaa aaaagcttac aaagaaacag actttacgcg tattgaaagt atagatcctg
    11161 tagaacatat ccaaaccacc caagatatgc ttacagaaat gaagcaaaaa atgagcgata
    11221 acaaatacat cgttgaaaat gctacaaaag ataccttaga agaaaaaatc aatgaaattg
    11281 tcgcaaaata tggctttaaa agtatgattt atggggcgga tttaaattta gatttagaac
    11341 agatcaaggc agaaaagaag atttgctttg ataaagaaat cgaaaatcta agatctgaag
    11401 tttttcatag tgatttttcc atcattcacg caagagcagg ggtaagctct catggagttg
    11461 cacttatacc ttcaagtaaa acccaaccta gaatgctaag ccttgcacct aaactttgcg
    11521 tagtattact taaaaaagaa aatgttgtta aaagtcttag cgaagcttta aatttagtaa
    11581 aaaaagaaaa tgaaatttta cctactaata tcttatttat agcagggcct tcaagaacag
    11641 cagatataga acttatcact gtttttggtg ttcatgggcc acaaattgca catattatta
    11701 tttactgatt ctatactaga atcagtaagt cttaattttt aatattaatt atatatattt
    11761 tttatactat acaaatataa ataaaataaa ta
//
LOCUS       DAEBKH010000040        11385 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.040, whole genome shotgun sequence.
ACCESSION   DAEBKH010000040 DAEBKH010000000
VERSION     DAEBKH010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11385
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.040"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            195..1034
                     /locus_tag="KIL20_000762"
     CDS             195..1034
                     /locus_tag="KIL20_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HBD2720804.1"
                     /translation="MKKILLSVLTAFVVVVLAACGGNSDSKTLNSLDKIKQNGVIRIG
                     VFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCLPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPDIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMAIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            1075..2322
                     /locus_tag="KIL20_000763"
     CDS             1075..2322
                     /locus_tag="KIL20_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD2720805.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFVKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYRICSIFSIAFIIFGMLFSFYDEKFLFYFLLACFTQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFVVNAFYKEYLGIYLAIVGSCS
                     LFCVFLLKRVFARSKIKELSIVF"
     gene            complement(2305..3573)
                     /locus_tag="KIL20_000764"
     CDS             complement(2305..3573)
                     /locus_tag="KIL20_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HBD2720806.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKA
                     GNIRAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFKNLECLFTNDEEVGLMGVNSLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLPFNTLRKKGKIYELYAQNFKGGHSGINIVRNEKSSIKEMAKFIQENKGEIISFEGG
                     ERINSIPKHAKALVHFKNEVKSNNWIKCDFKEEGEFEICDQSNKLLSLINSFTHGVRA
                     YDENLGIVQTSINLATLRMQDKQIKFALFARSNILDGLKQVEFETLEFFKAFDFKVRS
                     FNFYPPWEGKPNALSDMVFKALKKISPNAKVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
     gene            3641..4168
                     /locus_tag="KIL20_000765"
     CDS             3641..4168
                     /locus_tag="KIL20_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HBD2720807.1"
                     /translation="MRINYKKLFNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSF
                     EGKVVRIIDGDTIEVNHENKLTRIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEII
                     YKNKDTYGRIVAIVKLNNVDINRFLVSKGYAWADTYYSNAYIKEQENAKKNHLGLWKE
                     GNPIEPYKWRKHNKF"
     gene            4177..4350
                     /locus_tag="KIL20_000766"
     CDS             4177..4350
                     /locus_tag="KIL20_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720808.1"
                     /translation="MKKYTLMILLVLGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     VCPKNWVDIKMTP"
     gene            complement(4351..4929)
                     /locus_tag="KIL20_000767"
     CDS             complement(4351..4929)
                     /locus_tag="KIL20_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720809.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLTGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEIKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(5001..5891)
                     /gene="cmoB"
                     /locus_tag="KIL20_000768"
     CDS             complement(5001..5891)
                     /gene="cmoB"
                     /locus_tag="KIL20_000768"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HBD2720810.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYTKIQELKALNLACNFSLDDSVNL
                     STNSQAKDEILAITKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIEYELLGVEDLPRY
                     GLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYVRIGI"
     gene            complement(5965..6569)
                     /locus_tag="KIL20_000769"
                     /pseudo
     CDS             complement(5965..6569)
                     /locus_tag="KIL20_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790742.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
     gene            complement(6579..7178)
                     /locus_tag="KIL20_000770"
     CDS             complement(6579..7178)
                     /locus_tag="KIL20_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family protein"
                     /protein_id="HBD2720811.1"
                     /translation="MDKLITWNEKYSIHDTMIDIQHQKLFELAGKVESAVYKFVKREE
                     LKEILTELFNYMKEHFDNEEQYMQEIHYPYLNEHKIMHKNIIRDMSYLIQNIKTTNDL
                     KEKLYTIMSEWLLEHILHHDVMIGKWIKAHNKNTKEEETKQEELTEDSQEKLEFIYSC
                     PCKTTHALSYNEHLDILYHNKNLKCKNCQQTLFYFKNPI"
     gene            complement(7233..8963)
                     /locus_tag="KIL20_000771"
     CDS             complement(7233..8963)
                     /locus_tag="KIL20_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HBD2720812.1"
                     /translation="MLEQSPYKEDANLKNYNNTLKVKDGVIIIDHSNTSDDNNSKTIN
                     TKKNTQKDNNNTQKNQPNLSNDNTLKTKTPNSNTPSLKNTSKEESIHKVSFSFHITNK
                     NINFKDLGLDEQVLQEALNDYKKESISVQDLQDIANIISYYVQVSGYPAATAYIPQQE
                     LKDQIQINITLGVLGKYVVQNNSSVRDYAIESKLPNHKGEIITTKLVEDAVYKVNEMY
                     GIQTLASLKAGDNPGETDVVIETTPSDSFVSVLFYGDNYGIKESGRYRGGASMSFNNI
                     AHQGDSLNAYLQRSDEAQTNYGISYTTFLGNLKITPSYSKGNYALGGIWREFDFIGTS
                     ENLGIDLKYPLWITTYNSFYLTSSYYHKKLSDSKFDILTFDKSSDTISFGIEGVYNGI
                     SNDSFSYSANVSYGNVKDEGMTIVGIGTSKVGGVEFGKFAKLNVNLNNAYFFNDTFTH
                     LFSLNYQQVINGATLDSSETISLGGPYGVRAYNNGDGEGDNAVVASFGLRMATPLKDF
                     YITPFYDIGYSWYENDSYTNYMDAYGLQLLYNKTGNFYVKLDLARALKKYKLDDDYSS
                     KAYVSFGKYF"
     gene            complement(9287..10990)
                     /locus_tag="KIL20_000772"
     CDS             complement(9287..10990)
                     /locus_tag="KIL20_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HBD2720813.1"
                     /translation="MKKLNKLSLSLVVGSLLFTQSYALPSGGKFTHGTSGSISVSGGT
                     MNISGSKTNSVIQWGGGFNIANGETVNFKGNGYNYLNIVYGSKSSHIDGTLEGGTNNI
                     FLINPNGIVVGKDGSINANRVFLSASSIGDKEMKEFAKDGKISAFEGNPLTTASPVIK
                     SNAGNVINLGTITAGERVVMVGNQVSNMKYGSTDYGKFIFTNKKEQSNTVYLDVYSND
                     IFVIRGPASNTIKKEDSVMLSIRPNKGSTGPGGDPTDTIGYKETSDLVAKDNISNEVL
                     NSIFNDLKFNSSVDISDLSKFYKDGKILTADELTSINQSMDFITALYGQTQDSNNATF
                     ANALKEVLGNSYGNLGKANQAIIKTKEILSQIPKITEQQKNIQKAYDQAVDAYNEAVK
                     KYNAALSGVTGSNASETITALKTVLDKAYNDLKNAEANLESTTASNNSSLKSSNETLA
                     SVSIDGYKLTVNGEYLADYKTVNKPNDNNSGSNNGNDGTDSGDINNGNNNGSNNNPND
                     TIGQQEPDIATALLMQTTDEDPNINEDDKQASIDEASTQESGNACIVSDNFKAGNPCS
                     R"
     gene            complement(11087..>11385)
                     /locus_tag="KIL20_000773"
     CDS             complement(11087..>11385)
                     /locus_tag="KIL20_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002923135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720814.1"
                     /translation="APINISSEGVLALYTLKEQYPYLKNKEILILQSEQGFIDENSNT
                     LNQEELQSFIEKMQKNKEDFKLSSIDRLKKMNLQKLSYEVRISQDGKSIYAKIK"
BASE COUNT         3533 a         1731 c         1689 g         4432 t
ORIGIN      
        1 aaaaagatta tatctttttt tacttaaaat ttaaacaatg ctaaaagagg gtgtgagatt
       61 aattacattt ttacacatag gaaaatcttt ttagtttgtt tcaaatgcat tatttataat
      121 tttaagtata attaactttg caattattat atattttgca atagctttaa gcttatttta
      181 aagaaaggaa atgtatgaaa aaaatacttc taagtgtttt aacggccttt gttgtagtag
      241 tattggctgc ttgtggagga aattctgact ctaaaacttt aaattctctt gataagatca
      301 agcaaaatgg agttattagg attggggtat ttggcgataa accacctttt ggttatgtgg
      361 atgaaaaagg aaacaatcaa ggctatgata tagctttagc taaacgcata gcaaaagaac
      421 tttttggcga tgaaaataag gtgcaatttg ttcttgttga agctgcaaat agggttgagt
      481 ttttaaaatc aaataaagta gatattattt tggctaattt tactcaaact ccgcaaagag
      541 ccgagcaggt tgatttttgc ttgccttata tgaaggtagc tttaggcgta gctgtaccaa
      601 aggatagtaa tataactagc gtagaagatt taaaagataa aaccttgctt ttaaacaaag
      661 gcacaacagc agatgcgtat tttacgcaaa attatcctga tattaaaact ttaaaatacg
      721 atcaaaatac cgaaactttt gccgctttga tggataaaag aggcgatgct ttaagtcatg
      781 ataatacctt gctttttgct tgggtgaaag atcatcctga ttttaaaatg gctatcaaag
      841 agttaggcaa caaagatgtt atcgcaccag cagttaaaaa aggcgataaa gaacttaaag
      901 aatttatcga taatttgatc attaaactag gccaagagca gttttttcac aaggcttatg
      961 atgaaacttt aaaagctcat tttggagatg atgttaaggc tgatgatgta gtgattgaag
     1021 gtggaaaaat ttaacaaagg gctttttgcc ctttatattg atttaggata aaatatgcaa
     1081 aaaaaataca aaaatattat ttatgcttct ttgggtggaa ttttggaatt ttatgatttt
     1141 gtgctttttg cctttttttt ggatattttt gctaaggtat tctttccgca aaatgatgct
     1201 ttttggatgc agataaatgc ttatatagcc tttggtgctg cttatttagc gcgtcctttt
     1261 ggttctattg tgatggcaca ttttgctgat agatatggaa gaaagaatat tttttatatt
     1321 tctatgcttt tgatggtttt gcctagtttt gctttagctt ttttgccaag ttatgaaagt
     1381 ataggtatat ttgctacttt gattttattt actattcgta ttttgcaagg tttagccgtt
     1441 ggaactgagg tgagcggagc ttggatttat gtgagcgaat ttgtcaaagg gcgtcaaatt
     1501 cctttagctc ttggttttat ttcagcgact ttaaccatag gtttattgct aggaaatatt
     1561 gccactttag gcataagatc ttattttacc ccagaagaag ttcaaagcta tgcttggaga
     1621 attcctttta tcataggagg attttttgga attttagctt tgtttttaag aaataaactc
     1681 agcgaaactc cagaatttgt aaaagttcaa aatgaaaaga aaattttaag ttttccattg
     1741 tttgaagctt taaaaactca taaaatgagc atgcttgttt gttttttaat gaccatggtt
     1801 ttaacaagcg gtgtggcaac tttgatgatt ttgcctaagt attttgaaag tcttttagct
     1861 atgagtaaaa cttctgcttt atgggtacaa aattttgcta ttttagcggt gatttttgga
     1921 gctttatttc aaggtttttt agcaagcaaa tggggaagct ataggatttg ttctattttt
     1981 agtatagctt ttattatctt tggtatgctt tttagttttt atgatgagaa atttttattt
     2041 tattttttac tggcttgttt tacacaaggt attatcactt tcgcacctgt ttttatgaca
     2101 caaattttta aaagcgaact taaatttagt gggcttagtt ttgcttataa tatttcttat
     2161 gcgattttag gttttttaac cccttttgta gttaatgctt tttataaaga gtatttaggt
     2221 atttatcttg ctatagtggg atcttgctcc ttattttgcg tgtttttgtt aaaacgcgtt
     2281 tttgcaagaa gcaagattaa agaattaagc attgtctttt aaaacttcaa aaacaacctt
     2341 agatattttt tcaactgaag cgatttcgca atgctcatca gttgaatgag gattatggat
     2401 atttggacct atagaagcgc ataaaagctc ttgttttttc tctataatgc cacactcaag
     2461 ccctgcatgg atagctgaaa ctttggcatt aggcgatatt tttttaagcg ctttaaaaac
     2521 catgtcgcta agtgcgtttg gtttgccttc ccaaggtgga tagaaattaa aacttcttac
     2581 tttaaaatca aaagccttga aaaattctaa agtttcaaat tctacttgct taagtccatc
     2641 aagtatatta gatcttgcaa aaagtgcgaa tttgatttgt ttatcttgca ttcttaaagt
     2701 agctaggtta atgcttgttt gaactatacc tagattttca tcataagctc taactccatg
     2761 agtaaaagaa tttataaggc ttaaaagttt gttactttga tcgcaaattt caaattcacc
     2821 ttcttcttta aaatcgcatt ttatccagtt attgctcttt acttcatttt taaaatgcac
     2881 taaagctttg gcgtgtttag gtatagaatt gattctttct ccaccttcaa aagaaatgat
     2941 ttctccttta ttttcttgta tgaatttagc catttctttg atggagcttt tttcgttgcg
     3001 tacgatattt atgcctgagt gtccaccttt aaaattttgc gcgtaaagct cataaatttt
     3061 accctttttt ctaagggtat taaaaggcaa gctagcttct atatctactc cacctgcaca
     3121 gcctatcatg atctcatcat cgctttcatg atctaaattt aaaagcattt tagattctaa
     3181 agtgtgctcg agtgaattca ctcccatgag tcctacttct tcatcgtttg taaaaagaca
     3241 ctctaaattt ttaaattcag ccatagcact catcatgatg gctataccta taccattatc
     3301 cgcgccaaga cttgaatttt tggctcttaa aaagccattt tcttcataaa cttctaagtt
     3361 tggtgcatcg cccatacaga ccatatcata atggctttgt aagcaaattt ttggtttgcc
     3421 ttttatggca cggatatttc ctgctttatc tacactcact ttaaagcctt tatctttagc
     3481 ataagagctt aaaaattctt tcatttgttc tgtttcataa ctgcaatgag gaattttaca
     3541 taattgttta aaattttcta taacattttg cattttatct cctttgtttt gataaaatta
     3601 tggcatattt tttaaaattt aaaggcaaaa tgattaaaaa atgagaataa attataaaaa
     3661 attatttaat ttaagaaaat tactaagtga tccaaaaaaa cttttttctg tattaatttt
     3721 tactcttgta gttgttttta tccagaatta tattgcccaa aattctagtt ttgaaggaaa
     3781 agtagttaga attattgatg gagatactat agaagttaat catgaaaaca aactcactag
     3841 aataagattt tttggtatag atgcaccaga acttaaacaa agttttggaa agcaatcaaa
     3901 agaagcttta agcagaattt taagcggtaa acaagttgaa attatttata aaaataaaga
     3961 tacttatggt agaattgttg ctattgtaaa gcttaataat gttgatatta atcgattttt
     4021 agtaagcaaa ggctatgctt gggctgatac ttactatagt aacgcttata ttaaagaaca
     4081 agaaaatgct aagaaaaatc atttaggtct ttggaaagag ggtaatccta tagagcccta
     4141 taaatggaga aaacacaata aattctaagg aaaaacatga aaaaatatac tttaatgata
     4201 ctattagttt taggaatttc tggatgtttt gtaaatgaaa gaggaatttc aaatcgtttt
     4261 tatgatgatt gtaaagaata ttatgatgga agtggaactt atcataaggt ttgcccaaag
     4321 aattgggtgg atattaaaat gactccttga ttattttcca cccacagagg ccattaatgc
     4381 agctgctacg gcttctggat tgttgatttt ggcaccttgt tcttgatttt ctgtaggttt
     4441 aacagtatta agtggcggac gcttgagttt aaatatatgc tcatcagtgc taacaacttg
     4501 tatcgttcct tcaaacattt taatttcttt aacatgcccg accactttta catctctttt
     4561 tttggaggtt tcgtcaaaaa gtgcatgagc ttcaagttct aaaacatcgc ctaatttaag
     4621 cggagcataa aaaaaacatt ttgatccaat aatcactgaa aattctttat tgatagaggc
     4681 ttgtgctaca tagtttgccg cagcgaaaat aaaggcatca aaaatcaatc cttgatcatc
     4741 tgctaccatt tcgcttgtgg ttattaaaat tgatttggca tagtttttat caatttctat
     4801 aatggttcca gtaagcgaag tgtttaattc aggacaagtg agtaattctg ctctaacacg
     4861 agatatatct tctgcagatg cgtattcttc aagttgtgca tattcttcaa aattatcttt
     4921 ttttgccata tctaaccttt aaattctact tatctacttc aaaatatcta aagcctagat
     4981 cgacaaaaag caaaaagaat ttatatccca atacgcacat aaactctttt gggtgcttca
     5041 tagccttcaa tggtaagatt tttatccttt ggatctaaga aattttccag cgaaaaagag
     5101 tctatccatt ctgtttttct ttgttcgttt tcatcggttt tttttgtagc caaaacttca
     5161 aattctttaa atcctgctct ttcacaccag ttttttaatg cactaatgct tggtacaaaa
     5221 taaatatttg gaattttaga ataagtttta ttaggcacaa gagcgatttc tctctcatct
     5281 tctatataca tggtatctaa aaaaacaact ccatttttat taagtcctgc ttttaaatct
     5341 tttagcattt ttataggatc acttctatga taaatcaccc caagacagaa aatcacatca
     5401 aatttcaagc catatcttgg aagatcttct acgcctaaaa gttcatattc tataggagtt
     5461 ttagctaaag cgttaatgag ttcaaattgc aaacggtatt tgatagaagg atcaaaacct
     5521 atgagttttg caggattaaa ttcaagcatt ttaaacatat aataaccatt attacagcct
     5581 atatcagcaa cgcatttttg agaaatttcg ttcataaaag gctttaaaat attaaattta
     5641 ataaaacttt gccattctgt atcgatgaaa agatcgtcta ttttaaaagg accttttctc
     5701 catggtttaa gttcttttgt tatagctagg atttcatctt tggcttgaga atttgtagat
     5761 aaatttacac tatcatctaa agaaaaatta caagcaagat tgagagcttt aagttcttga
     5821 attttagtgt ataaagggtg atttagaaat tgtttttcga gtaaattttc ttgcattttt
     5881 atccttgaca tttgctttta atgctaaatt ataacattaa aagcttttag aattagcaag
     5941 tataagctaa gattattttt aaaatcaaaa cccttccgaa taaaccttat aaaattctaa
     6001 agcttctcta cattttttac atttgaattt cttaccttgt aatttgattt tttcatgaat
     6061 tccaaaaggc acatcatgga tagcacctga gcacttgcaa atataaagat aaacagcatt
     6121 ttcaagttct tcatcgcctt cttcttcaaa gcttacctct ttatcatctt cagaagctaa
     6181 agaagatctt ctatattgtt caactttcat atcttcataa agtatatgtt ctaaaagcca
     6241 ttttttaaca gctaaataaa gtttttcttt taaatcatta gtggatttaa tatttttaat
     6301 cagttctatc atggattgga taatatgttt atgaattttt tatgtgtttc aatatctgga
     6361 tatttaatca gttccatgta tcgctcttct tcataaaaat gatctttcat ataattaaaa
     6421 aattcagcaa gtaaattttt aatctcatcc ttataaacgg gtttatcaat caaatattct
     6481 accttacccg caagttcaaa aagctttttg tgctgttcat ctattttggc attatggaca
     6541 ctaaaggttt tatcccattt tggtagcatt ttattccttt atattggatt tttaaaataa
     6601 aataaggttt gttggcaatt tttgcacttt aaatttttat tgtgatataa aatatctaag
     6661 tgttcattgt atgataaagc atgagtggtt ttacaaggac aagaatatat aaattctaat
     6721 ttttcttgag aatcctctgt taattcttct tgttttgttt cttcttcttt agtgttttta
     6781 ttgtgagctt taatccattt gcctatcata acatcatgat gtaatatgtg ttctaaaagc
     6841 cactctgaca ttatagtata aagtttttct tttaaatcat tagtagtttt tatgttttgt
     6901 ataagataag acatatcgcg aatgatattt ttatgcatga ttttgtgttc atttaaataa
     6961 ggataatgaa tttcttgcat gtattgttct tcattgtcaa aatgttcttt catgtagtta
     7021 aaaagttctg ttaaaatttc tttgagttct tctcgtttta caaatttata aacagcactt
     7081 tcaaccttgc ctgcaagttc aaaaagtttt tggtgttgaa tgtcaatcat tgtatcatga
     7141 atactgtatt tttcattcca agtgattagt ttgtccaaaa tttctcctat ccacccctta
     7201 cacccttagc aagaaaaact tcttgctaaa actcaaaaat acttcccaaa gcttacataa
     7261 gctttagaac tataatcatc atctagttta tatttcttta aagctctagc taaatcaagc
     7321 ttaacataaa aattccctgt tttattataa agtagttgta aaccataagc atccatatag
     7381 tttgtataag aatcattctc ataccaagaa taacctatat cataaaaagg agtgatataa
     7441 aaatctttta aaggagtggc cattctaagt ccaaagctag ccactacagc attatctcct
     7501 tctccatctc cattattata agcccttact ccataaggac ctcctaaaga tatggtttca
     7561 ctactatcta atgtagctcc attgataact tgttgataat ttaagctaaa aagatgagta
     7621 aaggtgtcat taaagaaata agcattgtta agattgacat taagtttagc aaattttcca
     7681 aattctactc cacctacttt gcttgttcct atacctacta tagtcatacc ttcatcttta
     7741 acattaccat agcttacatt agcactataa gaaaaactat cattgctaat gccattataa
     7801 actccttcta taccaaagct tatcgtatca gagcttttat caaaggttaa aatatcaaat
     7861 ttagaatcac taagtttttt atgataatag cttgaagtta aataaaaaga attataagtc
     7921 gtaatccaca aaggatattt taaatctata cctagatttt cagaagttcc tataaagtca
     7981 aattctctcc aaattccccc taaagcatag tttcctttag aataacttgg agtgattttt
     8041 aaattcccta agaaagtagt atagcttata ccatagttag tttgtgcttc atcgcttctt
     8101 tgcaaataag cattaagact atctccttga tgagctatgt tattaaaact catactagca
     8161 ccacccctat atctgcctga ttcttttata ccgtaattat ccccataaaa caatacagaa
     8221 acaaagctat cactaggggt agtttctatc actacatctg tttcacctgg attatctcct
     8281 gcttttaaag aagcaagggt ttgtatgcca tacatttcat tgactttata aaccgcatct
     8341 tctactaatt tagtagtgat gatttcacct ttgtgattag gtaatttact ttctatagca
     8401 taatctctta cactagaatt gttttgaacc acatatttac ctaaaacacc taaggtgata
     8461 ttgatttgaa tttgatcttt tagttcttgt tgtgggatat aagctgtagc agcaggatag
     8521 ccactaactt gaacataata agaaataata ttggctatat cttgtaagtc ttgaactgaa
     8581 atactttctt ttttgtaatc gtttaaggct tcttgtaaaa cttgctcatc taaacctaga
     8641 tctttaaagt ttatgttttt attggtaata tgaaagctaa agctaacttt atgaattgat
     8701 tcttctttag aagtattttt taaagaagga gtgtttgaat ttggggtttt agtttttaaa
     8761 gtattatcat tagacaaatt aggttgattt ttttgagtgt tgttattatc tttttgagtg
     8821 tttttctttg tgttgatggt ttttgaatta ttatcatcac tagtattaga atgatctatg
     8881 ataatcactc catcttttac ttttaaagtg ttattgtagt tttttaagtt agcatcttct
     8941 ttataaggag attgttctaa catttgtatg gtttttttat tatctttagt atcactagca
     9001 taaaggctta agatagctaa actagatagt aagataatgc gtttcatttg tgtttttcct
     9061 ttttaatgat ttcataagag cttgttttat agatttagtt tttaatcttt tttatttttt
     9121 gctttttctg tttttatttt ttctttcttt ttatcttttt atttttcttt attttttgta
     9181 tttgtttgat tgattatcaa tcttttttga tttttaatct ttaaattttg tttgttttat
     9241 taatttttaa caagatccaa aaggctttta accttttgga ttttaatcat cttgagcaag
     9301 gatttcctgc tttaaaatta tccgatacta tacaagcatt accactttct tgagtactgg
     9361 cttcatctat acttgcttgt ttatcatctt cattgatatt tggatcttca tctgtagttt
     9421 gcataagcaa agctgtagca atgtcaggtt cttgttgtcc tatggtatca tttggattgt
     9481 tattagaacc gttgttatta ccattgttaa tatcacctga atcggttcca tcgtttccgt
     9541 tgttggaacc actattgtta tcattaggct tgttaacagt tttataatct gcaagatatt
     9601 ctccattaac tgtgagttta taaccatcta tgcttacact tgctaaagtt tcattagaac
     9661 tttttaagct agaattattg cttgctgtag tgctttcaag gttagcttca gcatttttta
     9721 aatcattata tgctttatct aaaacagttt ttaaagcagt tatagtttca ctagcattgc
     9781 tacccgttac tccacttaaa gcagcattgt attttttcac tgcttcattg taagcatcta
     9841 cagcttgatc gtaagctttt tgaatatttt tttgttgttc ggttatttta ggaatttgag
     9901 aaagaatttc ctttgtttta ataatggctt gattagcttt tcctagatta ccataagaat
     9961 ttcccaatac ttcctttaaa gcgtttgcaa atgttgcatt attgctatct tgagtttgtc
    10021 catataaagc agtaataaaa tccatacttt gattaatact tgttaattca tcagctgtta
    10081 atatttttcc atctttataa aatttactta agtcgctaat atcaacacta gaattaaatt
    10141 tcaagtcatt aaatatagaa tttaaaactt catttgagat gttatcttta gcaacaagat
    10201 cactagtttc tttataacct attgtgtctg tcggatctcc tcctggtcca gttgagcctt
    10261 tattaggtct tatactcaac attacagagt cttctttttt tattgtattt gatgcaggac
    10321 cacgaatgac aaatatatca ttactataga catcaagata gacggtattg gattgttctt
    10381 ttttatttgt aaaaatgaat ttaccataat cagtgctacc atatttcata tttgaaactt
    10441 gattgcctac cataacaact ctttctcctg ctgttatagt tcctaaattt ataacatttc
    10501 ctgcattgga tttaattaca ggtgatgctg ttgtcagagg atttccttca aatgctgaaa
    10561 tttttccatc ttttgcaaac tccttcatct ctttatcccc tatcgatgaa gcagataaaa
    10621 acactctatt tgcattaata cttccatctt tacccactac tataccatta ggattgatta
    10681 aaaagatatt gtttgtacca ccttctagtg ttccatctat atgagagctt ttagaaccat
    10741 agacaatatt taagtagtta tagccattac ctttaaaatt tacagtttca ccatttgcta
    10801 tattaaaacc accaccccat tggataacag agtttgtttt acttcctgag atattcatag
    10861 tgccaccact aacacttata cttccacttg ttccatgagt gaacttaccc ccacttggta
    10921 aagcatagct ttgtgtaaaa agtaaagaac ctacaactaa agacaaagaa agtttattta
    10981 actttttcat gacttgctcc tttttgtaag attaagattt aagaatcttt tgtttatatt
    11041 tataaaaata caagcaaaag attcctatct ttaagatagg aatgatttat tttatctttg
    11101 cgtaaatgct tttaccatct tgggatattc ttacttcata agaaagtttt tgtaaattca
    11161 tcttttttaa tctatctata gaacttagtt taaaatcttc tttgtttttt tgcatttttt
    11221 caataaagct ttgaagttct tcttgattta aagtattaga attttcatct ataaaacctt
    11281 gctcactttg taagattaag atttctttat ttttaaggta ggggtattgc tctttgaggg
    11341 tgtaaagagc taatactccc tcgctagaaa tattaatagg agcat
//
LOCUS       DAEBKH010000041        11254 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.041, whole genome shotgun sequence.
ACCESSION   DAEBKH010000041 DAEBKH010000000
VERSION     DAEBKH010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11254
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.041"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..320
                     /locus_tag="KIL20_000774"
     CDS             <1..320
                     /locus_tag="KIL20_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HBD2720815.1"
                     /translation="LKLCELLNSNLSGFNLKKIKKPIIKKDELKLDLNYSKMYAKLGL
                     NTKDQQGLMAYLMNVFNELELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVNLL
                     ISE"
     gene            325..2121
                     /gene="glmS"
                     /locus_tag="KIL20_000775"
     CDS             325..2121
                     /gene="glmS"
                     /locus_tag="KIL20_000775"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HBD2720816.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFEFYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDLNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDVLKSLSFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MIITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            2256..3647
                     /gene="fumC"
                     /locus_tag="KIL20_000776"
     CDS             2256..3647
                     /gene="fumC"
                     /locus_tag="KIL20_000776"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HBD2720817.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFVSSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESAMELGLVGEEDFN
                     KFVDPTKMIGPKA"
     gene            complement(3677..4720)
                     /locus_tag="KIL20_000777"
     CDS             complement(3677..4720)
                     /locus_tag="KIL20_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HBD2720818.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITM
                     FYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(4724..5731)
                     /gene="ruvB"
                     /locus_tag="KIL20_000778"
     CDS             complement(4724..5731)
                     /gene="ruvB"
                     /locus_tag="KIL20_000778"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HBD2720819.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            5822..6232
                     /locus_tag="KIL20_000779"
     CDS             5822..6232
                     /locus_tag="KIL20_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HBD2720820.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            6233..6590
                     /gene="ssrA"
                     /locus_tag="KIL20_000780"
     tmRNA           6233..6590
                     /gene="ssrA"
                     /locus_tag="KIL20_000780"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            6796..9069
                     /locus_tag="KIL20_000781"
     CDS             6796..9069
                     /locus_tag="KIL20_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HBD2720821.1"
                     /translation="MKKNASSKILLSLGVATLLYSSAFAQEINLTQSSDVGNYFEENG
                     KDINLKNPDKYKGQDLNIKMGVWDLPNDDYDSADYRLNIDIGKNNTLSFTHNNGQNPA
                     YVTNLNATAKEVKTTDIVLQAFAPLVINGNLTMTSSGAGTITEDEKKGSGIILYNGAV
                     EGKSANGSLTINGNFTADKTLFATYGNFVKVNGTANLTNSNFGLMKRSYTDLEANNVV
                     MVQAKDFNENILKANNNAGALLLKFASDYISTDVQGKDPLEAGTIIDISDEDKYGDGE
                     KGLVDYKLSVQNCGGNKCLVINGGATAAAKDKLVQLQVDIDAIDKLLKNEFDSSQDEE
                     WTKAKEALEKQKTELEQLKQEAEKNGGKIDDEKYIDLVNKNSNLNLSANDKASILALR
                     SITEQLGSIGADLASREGVKLALQIKKDTDNTGKSVSNLNSASSAVNTTMNISNDVSI
                     GSRVAMLNNPFGTYASKMNGLKFAALDSDMRPSYVNEYTNSVWANAFGGANIIDGDSG
                     AMYGATVGVDKQANDDVLWGTYFTYANAKIKDNNLEQKSDNFQLGMYSTINIAPQWEL
                     NLKAYAQVSPTKQDNVQVDGAYNSDYTSKFLGLSANAGRVFDLSDNTLFIKPFAGVNY
                     YFSYTPSHTENGAIAKDIDSMKNNSVSVEVGAEFRKYMNENSYIFVTPKIEQFVINSG
                     DDYTANLAVNNAFFTSVEANNKKKTYGQIIVGGNVDFTNQLSMNLGFGAKQILAGKVD
                     NKNETYLSGQVGLKYKF"
     gene            complement(9211..>11254)
                     /locus_tag="KIL20_000782"
     CDS             complement(9211..>11254)
                     /locus_tag="KIL20_000782"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HBD2720822.1"
                     /translation="WLRFNSRVLDQCSKNLPLLEKLKFITIYCTNLDEFYMIRVAGLK
                     QLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLERYFNEITSELEKENLFIKHYEN
                     LDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLNNLSFSLAVKICDKAHPELVKFG
                     MIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPGYKLLASAAFRVTRNADMVIEEE
                     EADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVEFLNTHMKIFHKDVYEYSILLNL
                     PSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAVEKEDILIIQPFESFDPVYKF
                     IKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGKQVTVMVELKARFDEENNLHW
                     AKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLKFYMHLSTGNYNASSAKIYTDVS
                     YFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKVLEMIRIETSKKNEGVI
                     VAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCLKPDEEYSKNIRVRSIIGKYLEH
                     ARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKLAQFLRLQLSDNVLA
                     YELKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTLKKDTDQSRATHLASKLFKEN"
BASE COUNT         3871 a         1652 c         1994 g         3737 t
ORIGIN      
        1 aactaaaact ttgcgagctt ttaaattcaa atctttctgg ttttaatttg aaaaaaatta
       61 aaaagccaat cattaaaaaa gatgagttaa aattagactt aaattattct aaaatgtatg
      121 ccaaattagg tcttaatact aaagatcagc aaggtttaat ggcgtatttg atgaatgttt
      181 ttaatgaact tgaacttgtt ttatgtgcag caaaaattca aaccataaga caaaggacgc
      241 gtaatatttt tatttttcaa aagaatgaaa aattagaaca tagcgagcaa aagttagtta
      301 atttattaat aagtgagtaa aaaaatgtgt ggaatcgtag gctatatagg aaataatgaa
      361 aaaaaacaaa ttatactaaa tggacttaaa gaattagaat atcgtggcta tgatagtgcg
      421 ggtatggcag tgatgcaaga aggagagctt agttttttta aagctgtagg aaaacttgaa
      481 aatttggcga ataaatgcac ggattttgaa agtcaaggtt atggttttgc tataggtcat
      541 acaagatggg caactcatgg taagcctact gaaatcaacg cacatcctca tttaggacag
      601 tattcttgtg tgattcacaa tggtattata gaaaattata aagaaatcaa agataaactt
      661 gaaaaagaag gcgtgagttt tttaagtcaa acggatactg aagttattgt ccagcttttt
      721 gaattttatg caagaaattt gggagttttt gaagcttggc aaaaaaccat caaagaactt
      781 cgcggtgctt ttgctacttt gttagtaaca aaaaaagatc tcaatcatgt gtattttgca
      841 aaaaatgctg cccctttgat tatcggtaaa aatgcaaata aagaatggta tttttcttca
      901 ggtgatgcac ctttgatagg aagttgtgat gaggtaatgt atcttgaaga tttaagcttg
      961 ggatacgcga gtaaagatga gcttgtcgtt tatgaaaatg atgttttaaa atcactttct
     1021 ttttctaagc tttcaggcga taaggcttat gcaaaaaaag acggctttcg tttttttatg
     1081 gaaaaagaaa tttatgaaca aagtcgtgtg atgagtgaag tgttaatggg acgtattcaa
     1141 ggcgatgaag tcgtttttga tgagctaaat aatgaagatt taagtcaagt agatgaaatc
     1201 acgctttgtg cttgtggaac aagctatcat gctgcaatgg caagtgctta tttgtttgaa
     1261 agaattgcta aagttaaagc taaagtagaa attgcaagtg aatttcgcta ccgtgaagca
     1321 attataaaaa aagattcttt atttatcgtt atttctcaaa gtggagaaac agcagacact
     1381 ttagaggctt taaagattgc aaaagagcag ggcgctaaga cttttgcaat ttgtaatgtg
     1441 gataattcta atatagtgcg tttagcacac ctaagtcttt taactcgtgc gggtatagaa
     1501 aaaggagttg cttcaactaa agcttttgcc actcaggttt taacactttg gatgcttgct
     1561 atttttatgg cacaaaaaag aaatttaaat gtttctgctg aaattaaagc acttttgcat
     1621 actccaaatt gcgtgagtgt aaaacaggct ttacatgaaa aaattcatcg tttatctaag
     1681 cgttatttag atggacatgg ctttttcttt ataggcagag atgtgtttta tcctttggct
     1741 ttagaaggag ctttgaaact taaagaatta tcttatcttc acgctgaggg ttatcctgca
     1801 ggagagatga aacatggccc tattgctttg gctgattcta agctttatac tatagcttta
     1861 atgccaaagc acatgcttta tgaaaaaaca aaatcaaatg ttgaagagct tattgctagg
     1921 gattctacag tgcttagcat ttcaccttta gaatttgatt taagtgatga ttttataaaa
     1981 accaatgagc aagatcatta tatgtgtgaa ttttttgaaa tgatgatcat tactcaactt
     2041 ttggcgatgg aaatttccat aagacttggt aatgatgtgg atatgccaag aaatttggct
     2101 aaaagcgtaa cagtcgaata atccgtgcag tttaaataaa ctgcacataa ctttcaaata
     2161 cttcaaaaaa atataaataa attttaaatt ataagctaac tttatgctta tttttgttta
     2221 aataattcta acaatatttc tagaaaggaa acactatgga atatagagtt gaacacgata
     2281 ctatgggtga agttaaggtc ccaaatgaca aatattgggg agctcaaact gaaagaagtt
     2341 ttgaaaattt caaaatcggt tgtgagaaaa tgccaaaggt tttaatctat gcttttgcaa
     2401 atcttaaaaa atctttagct ttagtcaata acaaacttgg caaacttgat gatgctaaga
     2461 aaaatgctat agttcaagct tgcgatgaga ttatcgcagg taaatttgat gataattttc
     2521 cacttgcgat ttggcaaaca ggttcaggca cacaaagtaa tatgaatatg aatgaagtta
     2581 ttgcaaatcg tgccactgaa atcatgggcg gagattttcg caaagaaaag cttgtacatc
     2641 caaatgatca tgttaatatg agtcaaagtt caaatgatac ttttccaact gctatgagta
     2701 tcgttgcggt tgagcaagta gagaaaaagc ttatccctgc gcttgatgag cttattgcaa
     2761 cttttgaaaa aaaagtaaaa gaatttgatg gtattatcaa gataggacgc acgcatttac
     2821 aagatgctac gccacttact ctagcacaag aatttagtgg atatctttct atgcttttgc
     2881 attcaaaaga gcaaatcatc gcttctttac caactttaag agaacttgcc ataggaggaa
     2941 ctgcagtagg aacagggctt aatgcacatc cagaattaag ccaaaaagta agtgaagagc
     3001 taactcaact tataggtacg aaatttgttt caagtccaaa taaatttcat gctttaacaa
     3061 gtcatgatgc gattaatttt actcatggag ctatgaaagg tttggctgca aatttaatga
     3121 aaattgcaaa tgatataaga tggttagctt caggcccaag atgtggtctt ggtgagctta
     3181 tcatccctga aaatgagcca ggaagttcga ttatgccagg taaggtaaat cctacccagt
     3241 gcgaagctgt tactatggtt gctgtacaag tgatgggaaa tgatgcagct atcggatttg
     3301 cagcaagtca aggaaatttt gaacttaatg tgtttaagcc tgtgattatt tataatttct
     3361 tgcaaagtct tgatttgttg gctgattcta tgcattcatt caatatccat tgtgctgtag
     3421 gtatagaacc aaatcgtgca aaaatcgatc ataatcttca taattcttta atgctagtta
     3481 ctgctctaaa tccacacata ggttatgaaa acgctgctaa agtagccaaa aatgctcata
     3541 aaaaaggtat ttctttaaaa gaaagcgcaa tggagcttgg tttggttggc gaagaagatt
     3601 tcaataaatt tgttgatcct actaaaatga taggcccaaa agcctagaac ataaaacttg
     3661 ccttttttaa ggcaagttaa attaaattct tatcttttaa aatcacatac attcttaaag
     3721 ttgatacaaa aaaggttaaa atcgcaggac ctagtataat accccaaaaa ccaaaggttg
     3781 aaattcctgc tatcatagcc aagaaaatta aaagttcgtt gattttggta ggggttttta
     3841 caagtttttt gttgatccat ttgataatta aaggtttgat taaagtatct gctataaaag
     3901 aaattacaat tacagaataa ataaaaataa caagagctga gttaagattg tttgaggcaa
     3961 attcataaag acttacaggc acataaatta aagctcctcc tatagcaggt atgagagaac
     4021 ttacagcaaa aattactccc attaaaattc catcataacc ataaaacatt gtgattaaac
     4081 caaaaagtgc accttgaaat attgctacaa ttaccataga gtaaagcaca acagccataa
     4141 cattacccac ttcgcttaaa acatcatcga gttctttttt atcaatggga atgatggatt
     4201 taagatagat aacaagttct gttccatata gatttgcaaa gaaataaaac acacaaatta
     4261 aaaccatatc tataagaaat ttagctcctg attttgtaaa acttgaagca taacttagaa
     4321 tttgtttaga aatgctattt aaatctatag aagctaaaaa ttctttgatt ttaggttcta
     4381 aaaaattaaa gctttcaggc aaagtaaatt gatagttttt gacataatca agtgtttgtg
     4441 tgactaaatt aatatcaaaa ttttttaaag ctttggcaag ttctatcata gcataaacaa
     4501 aaggtgcaaa gaaaagcaaa accatacaag ttgttgtaag aatggaagct aaaaatttat
     4561 gccctttagt aagatttaaa aatttcgcat tgatatttga ggtagctacc gccattaaac
     4621 tagctatgat aattacaagt aaaaaacctt taaaaaggta aagcaaaaga aataaaatga
     4681 ctaaaataaa gcttataaga aagaattttc cattttgcaa aatttactcc tcaaataaag
     4741 ttttttcata gtttagtttt aaagcactat agctttttgc actcgctata cgcccttttg
     4801 cagtgcgttc tatatagcca ttagctaata aataaggctc gattacatct tctatggtat
     4861 tttcatcttc gcttaaagcc gcagcaatac ttgcaagtcc gataggtttt tgcttagcag
     4921 cggttaaaag ttcaagatat cttaaatcca tcgcatcaaa accaagctca ttaactccta
     4981 aagaatttaa ggcctcatta gctctttttt ctgtgataat ctcttcatca ttaacatcag
     5041 caaaatctct aactcttttt aaaagcctta gagctattct aggagttgaa cgacttcttt
     5101 tagcgatctc aagtgcggct ttttcttcac aagttttatt aagttttaaa gctgcttttt
     5161 gcaagattag ggcaagttcg ctatctttgt aaaattctaa tctaaattgc ataccaaaac
     5221 gatcacgtaa aggattgcta agcatacctg cacgcgttgt agcccctata agagtaaatt
     5281 ttggtaaatc gatttttata gtttgagcag ctgggccact acctataatg atatcaaggc
     5341 ggtaatcctc cattgcaggg taaagcactt cttcgatagc agggcttaag cggtgaattt
     5401 catcgataaa aagtatatct ccttcgctaa gattggttaa aatggctgct aaatctccgc
     5461 ttttttctat cataggagcg gcggttgttt tgatatttgc acccatttca taggagatga
     5521 tattagctag tgttgttttt ccaagtcctg caggaccgct aaaaagtata tgatctaaac
     5581 attcattgcg ttttttagct gcagctataa agacatttaa atttttttta atgctttctt
     5641 gacctatata accatcaaaa tttgaaggac gcaacgaagt ttcgtaagtt tcatcaaagg
     5701 agtatttttc tatttctact attctatcca tatctttgct tatattttgg aaaaattaaa
     5761 ataagatttt agctaaaatt tgctagaatt tacattaaac tttaatgatt atggtttaaa
     5821 aatgggaatt ttaacaaaat tagaattaga ttatgaaatt gacgatatag aaaaattttt
     5881 gcaatttttt agaaccatgt gcgataggtt tgaaccttta atcatcaagc ttggaagcga
     5941 tagtgtgcgt tataaagaag ccataaaaga gcttgaaact ttagcacaca ataccgcttg
     6001 ggcagcaaga cgcttaaatc ttgaagaagt gactgatttt tgtgtatttt gtgaagagat
     6061 gatggcgcaa gcaaatcgct ttaatgggcc tgctagtgat gaatttacgg attggatgct
     6121 tttgatgagt gatcaatttg aaaaatattg tcgttcatat gaaaatgatg attctgtttt
     6181 agcggttttt aatcctttaa ttgttaatgt tccaaatatt atttctaaat aagggagcga
     6241 cttggcttcg acaggagtaa gtctgcttag atggcatgtc gctttgggca aagcgtaaaa
     6301 agcccaaata aaattaaacg caaacaacgt taaattcgct cctgcttacg ctaaagctgc
     6361 gtaagttcag ttgagcctga atttaagtca tactatctag cttaattttc ggtcattttt
     6421 gatagtgtag ccttgcgttt gacaagcgtt gaggtgaaat aaggtcttag ccttgctttt
     6481 gagttttgga agatgagcga agtagggtga agtagtcatc tttgctaagc atgtagaggt
     6541 ctttgtggga ttatttttgg acaggggttc gattcccctc gcttccacca tcacgctaat
     6601 tttaagtaaa tcataagttt atttcaaatt tttagaattt tttatatgaa gttaagaatg
     6661 atttattacc cttaaaattt tgatatattg ggttttataa tttttcatta aaaatttata
     6721 gttttatttt taagcttatt tttagggggg gggtataatt attccttcag tttaaattta
     6781 ttgaaggaga aacttatgaa gaaaaatgct tcgagcaaga tattgctaag cttaggtgta
     6841 gcaactttgc tttattcgag tgcttttgca caagaaatca atcttacaca atcttcagat
     6901 gtgggaaatt attttgaaga aaatggtaag gatatcaatc ttaaaaatcc tgataagtac
     6961 aaagggcaag atttgaatat caaaatgggt gtttgggatt taccaaacga tgattatgat
     7021 agcgctgatt atcgattgaa cattgatatc ggtaaaaaca atactttaag ctttacacac
     7081 aataatggcc aaaatcctgc ttatgtaaca aatctaaacg ctactgctaa agaggttaaa
     7141 acaacagata tagttttaca agcttttgca cctttggtga ttaatggaaa tttaactatg
     7201 actagctcag gagctggaac cattaccgag gatgaaaaaa aaggttcagg tataattctt
     7261 tataatggag cagttgaagg aaaaagtgct aatggtagct taactataaa tggaaatttt
     7321 actgccgata aaaccctttt tgctacttat ggaaattttg ttaaggtaaa tggaactgca
     7381 aatcttacaa attcaaattt tggacttatg aagcgctctt atacagactt agaagcaaat
     7441 aatgtagtaa tggttcaagc taaagatttc aatgaaaaca ttttaaaagc aaataataac
     7501 gcaggtgcat tacttttaaa attcgcaagt gattatatct caaccgatgt tcaaggcaaa
     7561 gatcctttgg aagcaggaac tataatagat attagcgatg aagataaata cggcgatgga
     7621 gaaaaaggct tagtagatta taaacttagt gttcaaaact gcggtggcaa taaatgctta
     7681 gtgattaatg gaggtgctac tgcagcggct aaagataagc tagttcaact tcaagtagat
     7741 atagatgcta tcgataaatt gcttaaaaat gaatttgatt ctagtcaaga tgaagaatgg
     7801 acaaaagcca aagaagccct tgaaaaacaa aaaactgaac ttgaacaact caaacaagaa
     7861 gctgagaaaa acggtggtaa aatcgatgat gaaaaataca ttgatttagt aaataaaaat
     7921 tcaaatttaa atcttagtgc taatgataaa gcttctatcc tagcacttcg ttctattaca
     7981 gaacaattag gaagtatagg agcagattta gcaagtagag aaggtgtaaa actagcccta
     8041 caaatcaaaa aagacacaga caatacaggt aaatctgtat ctaatctcaa ttcagcttct
     8101 agtgcagtga ataccactat gaatatttct aatgatgttt ctataggttc tcgtgtagca
     8161 atgctaaaca atccttttgg aacttatgct tctaaaatga atggtcttaa atttgctgct
     8221 ttagatagtg atatgagacc aagctatgta aatgaatata ccaatagtgt ttgggctaat
     8281 gcttttggtg gtgctaatat tatcgatgga gatagtggtg caatgtatgg tgctaccgtg
     8341 ggagtagata aacaagctaa tgatgatgtt ttatggggta cttattttac ttatgcaaat
     8401 gctaaaatca aagacaataa tctagaacaa aaaagcgata acttccaatt aggtatgtat
     8461 tctactatca atatagctcc gcaatgggaa cttaatctta aagcttatgc tcaagtttct
     8521 ccaactaaac aagacaatgt tcaagtagat ggtgcatata actcagatta tacaagtaaa
     8581 ttcttaggac ttagtgctaa tgcaggtcgt gtatttgatc ttagtgataa tactttattt
     8641 attaaacctt ttgcgggagt aaattattat tttagttata ctccatctca tacagaaaat
     8701 ggtgctattg ccaaagatat tgattctatg aaaaataatt ctgtaagtgt tgaagtgggt
     8761 gctgaattta gaaaatatat gaatgaaaac tcttatattt ttgtaactcc aaaaatagaa
     8821 caatttgtta tcaatagtgg tgatgattac acagctaacc tagctgtaaa taatgctttc
     8881 tttactagtg tagaagctaa caacaagaaa aaaacatacg gacaaattat cgtagggggt
     8941 aatgtagatt ttacaaatca actcagtatg aatcttggct ttggtgctaa acaaatacta
     9001 gcaggtaaag tagataataa aaatgaaact tacttaagtg gtcaagtagg acttaaatat
     9061 aaattttaat cttaaaaatc atttctaaat ctttttatag tttagaaatg attgtttatt
     9121 tctatgggaa atctcctagg gctttatctt aaagcccttt tttataacaa acaagtaaat
     9181 aagtctttag agtaaaaacc ctaaaaactt ttagttttct ttgaaaagtt tggaagctaa
     9241 gtgcgttgca cgactttgat ctgtatcttt tttaagtgtt ttataaattt tacttacata
     9301 ttcttctaag gtttgttgag aatctatgat tttttcagaa gaaggaattt tttcatactc
     9361 tccattgttt ttaagctcgt aagctaaaac attatcacta agttgcaagc gtaaaaattg
     9421 agctaattta gctttacttc tttcatcata tataggagtc ataagttcta agcgacgctc
     9481 taaatttctt ggcatccaat ctgcactcga tataaaataa tttggctcac tatgtttaaa
     9541 ataaaatact ctagcatgtt ctaagtattt tcctatgatg cttctaacgc gtatgttttt
     9601 gctgtattct tcatcaggtt ttaagcaaca aattccgcgt atgataagat cgatttgcac
     9661 tccttccata cttgcttcat aaagcgcttg tatgatatca ctatccacaa gagaattcat
     9721 tttagctaca atcacacctt catttttctt gcttgtttca atgcgtatca tttctaaaac
     9781 tttttctttg atttgatttg ggctcattga aagagtttga aggcgacgat ttttactaaa
     9841 gcccgataag atgtgaaaaa agcttgtcgt atctcttgca aattctgctt tgcttgtaaa
     9901 ataactcaca tcagtataga ttttagcact gcttgcatta taatttcctg tgcttaaatg
     9961 catataaaat ttaagtttat ctccttgttt gcgtatgact tgagaaacct tagcgtggac
    10021 tttaaaacct gtaatgccat aaataacatg agctccggca ttttctaaag ctttcgccca
    10081 atgaagatta ttttcttcat caaagcgtgc ttttaattct accatcacag ttacttgttt
    10141 tccatcgctt gcagcatcaa ttaaagcttg aactatattg gaattttttt caactctata
    10201 aagtgtcatt cttatggaaa ttacttcagg atctttgctt gcttctttga taaatttata
    10261 aactggatca aaactttcaa aaggttgtat gatgagtata tcttcttttt ctacagcatc
    10321 aaaaatagat aaattctcat caaaaggtgg taaagtttta ggtgtgtaaa gtgggcttaa
    10381 aagatgcgta aaggttttat ttcctgcgat ttgccaaagg ctagggagat tgagtaaaat
    10441 agaatattca taaacatctt tatgaaaaat tttcatgtga gtattaagaa attctacgat
    10501 ttgttcatct gcatcttttt gaatttgtaa tcttacaaaa gctccttttc tgcgaagttt
    10561 taagccttgt tctaaaatca tcataaaatc atcagcttct tcctcttcta ttaccatatc
    10621 tgcatttcta gtcactctaa atgctgctga agctaagagt ttatagcctg gaaaaatttc
    10681 ttctgcgtgt tgatggacta tactttctat aggaacataa atatttgcac ttacttcata
    10741 aaaacgaggt aaaactcttg gaattctaat cattccaaat tttacaagtt caggatgcgc
    10801 tttatcgcaa attttaaccg ctagtgaaaa agataagttg tttaaatgcg gaaaagggtg
    10861 agtagcatca acagctattg gaacaataac aggaaaaata ttggagaaaa aatactcatc
    10921 acatttttgt tttaaatttt catctaaatt ttcataatgt tttatgaaaa gattttcttt
    10981 ttctaattca cttgtgattt cattaaaata acgctccaaa agctcttttt cttgatgtaa
    11041 gtatttgcgt atggctttta attgttgtaa cggggtcatt tcatcgctac tgcttgcatt
    11101 aactccagct gaaaaaagtt gttttaagcc tgcgacgcgt atcatataaa attcatctaa
    11161 attggtgcaa tatatagtta taaattttaa tttttctaac aaaggtaaat ttttagaaca
    11221 ttggtctaaa acacgagaat taaagcgaag ccaa
//
LOCUS       DAEBKH010000042        11246 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.042, whole genome shotgun sequence.
ACCESSION   DAEBKH010000042 DAEBKH010000000
VERSION     DAEBKH010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11246)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11246)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11246
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.042"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..983
                     /locus_tag="KIL20_000783"
     CDS             <1..983
                     /locus_tag="KIL20_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720823.1"
                     /translation="AINSVFVCSNENLKLLASLEKPLMKLRLNAMFRKNHNLDFNDFK
                     IRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFEFINAKA
                     RELIFSKKDKNMARISYLVSRYKEKAFILELSKDDEDILLINKELNLLKLCLPKHSKE
                     LYEEIKKDEIGARLLENFSKEFPLLDENFELQNNFYSLFGLIGRVLNLGKNLQESASE
                     LLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGVDSANIAYGAVESLAY
                     FLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDVPLRV"
     gene            964..3150
                     /gene="hypF"
                     /locus_tag="KIL20_000784"
     CDS             964..3150
                     /gene="hypF"
                     /locus_tag="KIL20_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HBD2720824.1"
                     /translation="MYHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGVE
                     IILACTQKECENFIENLKNHLPPLARIDKLIITQISISNYENFSITPSLENTKSTPML
                     SDFALCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRVHTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILVKDQEAFIQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGSLVATSANLSGESI
                     IKDEFNLCQKLDGVFDFYLDYDREIINASDDSIVQVVNGKTMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPNFSYAKEFEERIKISHHYAHFCAVYFEYEENFSKDEKALAFICDGTGY
                     GEDGKIWGGEVFIGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKEF
                     LAKIPKIKLENLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFLKKE"
     gene            3223..3966
                     /gene="hypB"
                     /locus_tag="KIL20_000785"
     CDS             3223..3966
                     /gene="hypB"
                     /locus_tag="KIL20_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HBD2720825.1"
                     /translation="MCKDCGCSINSSHTHDHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLVIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSVTEGSDKPQKYPVMFKKADIVLITKADLAHHFDFDVKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            3966..4247
                     /locus_tag="KIL20_000786"
     CDS             3966..4247
                     /locus_tag="KIL20_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HBD2720826.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            4231..5322
                     /gene="hypD"
                     /locus_tag="KIL20_000787"
     CDS             4231..5322
                     /gene="hypD"
                     /locus_tag="KIL20_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HBD2720827.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCTVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNV"
     gene            5319..6293
                     /gene="hypE"
                     /locus_tag="KIL20_000788"
     CDS             5319..6293
                     /gene="hypE"
                     /locus_tag="KIL20_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HBD2720828.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEADVKSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDELKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            6293..6637
                     /gene="hypA"
                     /locus_tag="KIL20_000789"
     CDS             6293..6637
                     /gene="hypA"
                     /locus_tag="KIL20_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HBD2720829.1"
                     /translation="MHELSIVESLIELCEENALNNKACNVQEIYVKIGRLSGIEADLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDKTSILEENVFKCPKCQSIEYKITQ
                     GEDLHLMRLVME"
     gene            complement(6639..7604)
                     /locus_tag="KIL20_000790"
     CDS             complement(6639..7604)
                     /locus_tag="KIL20_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HBD2720830.1"
                     /translation="MYRKELQTLLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTRASDFLSAGSLFSEKKLLEIKTSKKIPTKDLKILVELCKNNTDNFF
                     LLELYDENSKQSDIEKIFSPHFARFFKANGAKEGVELLSIKAKQLGVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSELEK
                     ILDNFNEIALINSLYNSFYRLFKIALYAKVNGKIDFKDLLGYTPPPQVGQNLSSQAFS
                     LKIEQYKEIFTLLLKSEYELKTNSKLVKKEFLISNLLKLARILKN"
     gene            complement(7597..9531)
                     /locus_tag="KIL20_000791"
     CDS             complement(7597..9531)
                     /locus_tag="KIL20_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HBD2720831.1"
                     /translation="MKEFLNSLSYGISPHEASNEFKQILRELLASHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTALKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIDDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDIQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPRPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSKRRFN
                     YDEVDEILIQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADARKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALSDELNLRAEVDKLIIKAQKKAEYSSINAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTRVNLLENVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            9650..10672
                     /gene="ilvC"
                     /locus_tag="KIL20_000792"
     CDS             9650..10672
                     /gene="ilvC"
                     /locus_tag="KIL20_000792"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HBD2720832.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     IIGLREGSVSAVKAKNAGFEVMSVSEASKTADVVMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVAPKGIDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            10676..>11246
                     /locus_tag="KIL20_000793"
     CDS             10676..>11246
                     /locus_tag="KIL20_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HBD2720833.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVSSVKP
                     DYFIDKQEDLISSNKDHYEIGIFQENEFDNNKFVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFIPKDTNLTQDQNLTFNEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLA"
BASE COUNT         3844 a         1472 c         2069 g         3861 t
ORIGIN      
        1 aggctataaa ttcagttttt gtttgttcaa atgaaaattt aaaacttctt gcaagtttgg
       61 aaaaaccttt gatgaagcta aggcttaatg ctatgtttag aaaaaatcac aatcttgatt
      121 ttaatgattt taaaatcaga cttgctaggg atttgttttg ttttgcttta ggtttaaaac
      181 tttttgaaaa tgaatataaa tttttaagcg taaaaaagat agaagaatat caaaaagatt
      241 tttatatcag tgctttagat gagcaagtgg tggttttgga aggctttgaa tttatcaatg
      301 ccaaggcaag agagcttatt ttttctaaaa aagataaaaa tatggcaaga atttcttatc
      361 ttgtaagccg ttataaagaa aaggctttta ttttagaact aagtaaagat gatgaagata
      421 ttttgcttat caacaaagag cttaatttgc ttaaactttg cttaccaaaa cacagcaaag
      481 agctttatga agagattaaa aaagatgaaa ttggtgcaag gcttttagaa aattttagca
      541 aggaatttcc tcttttagat gaaaattttg agcttcaaaa caatttttat tccttgtttg
      601 gcttaatagg aagagtgcta aatttgggta aaaatttaca agagagtgct agtgagcttt
      661 taaaaatcgc tgatgagtca aaaatgcctc gtggagtaaa gattgattat cgtttgaaag
      721 aagataaaag ttttgattat acaagaactt taagatctgc tatgagtttt atgttagcag
      781 gtgtggatag tgctaatata gcttatggag cggttgagag tttggcttat ttcttacgtg
      841 atacttatga tgaattaaga gagaaaaagc aaagtgattt agcacttata agtggatctt
      901 tgtttgagca taaatctttg cttaaaaata ctttaaaaca tcttaaaaat tgtcagctaa
      961 gcgatgtacc acttagggta taagatcaaa atttcaggct tagttcaagg ggtgggtttt
     1021 cgtcccctag tttatgaact agctttaaaa tcaaagcttt ttggagaggt aagaaatgat
     1081 ggttttgggg tagaaatcat ccttgcttgc actcaaaaag aatgtgaaaa tttcatagaa
     1141 aatttaaaaa atcatctccc gcctttagca agaatagata agcttataat cacgcaaatt
     1201 tctatttcaa actatgagaa ttttagcatt actccttctt tagagaatac aaaaagcacg
     1261 cctatgttga gtgattttgc gctttgtaag gagtgtaaaa aagaattttt tgatgaaaaa
     1321 aatccacgct ttttgtatcc ttttatcact tgcacacatt gtgggccacg ctttagtatt
     1381 ataaaaagtc ttccttatga tagagtccat acttctatgc aagaattatt gatgtgtgag
     1441 ttttgcaaaa gtgaatacga agatcctaaa aataggcgtt ttcatgccca gcccattagt
     1501 tgtcctaagt gtaaaatcaa tgtttttctt aaaaatccaa agggtgaaat tttagtcaaa
     1561 gatcaagaag cttttataca aagtgcgaag tttttaaagg aaggtaaaat tttagccatt
     1621 aaaggcatgg gcggttttca tctcatgtgt gatgctttta atgaagaagc tttaaaaact
     1681 ctaagactta gaaaaaatcg ccctaaaaaa ccctttgctt tgatgtgtaa agatttacaa
     1741 agtgctaaag aacttgcctt tatagatgaa aaagaagaag ctttgcttgg tggggtttta
     1801 gctcctattg tgattttaaa ggcaaaaaaa gccttttctt taatcgctcc tgatgttgat
     1861 aaaatcggta ttatgttagc ttatacgcct ttacatcttt tgctttttga gtattttaaa
     1921 ggaagccttg tggcaacaag tgcaaattta agtggagaaa gtatcattaa ggatgagttt
     1981 aatttgtgtc aaaaacttga tggagttttt gatttttatt tagattatga tagagaaatt
     2041 atcaatgcaa gtgatgatag catagttcaa gtggtaaatg gtaaaactat gtttttgcgt
     2101 acttcaaggg gtttaaatcc tttttatttg gaaagaaatt ttaataaaaa aggcactttt
     2161 ttagctttgg gtgcggagct taaaaatgaa tttgtgattt tttatgaaaa taaactttta
     2221 atttctcctt atatagggga tttgaaaagt cttgatgtgc atgagagatt ttttaaactt
     2281 ttagaatttt ttaaacaaaa ttatgatttg aaatttgatg cgattttgtg cgataaacac
     2341 ccgaatttta gctatgcaaa agaatttgaa gaaaggatta aaatttctca tcattatgcg
     2401 catttttgtg cggtttattt tgaatatgaa gaaaattttt caaaagatga aaaggcttta
     2461 gcttttattt gtgatggaac aggctatgga gaagatggta aaatttgggg tggagaagtt
     2521 tttataggaa atttaaaaga atatgaaaga attgcacatt ttgaaaattt cactcttata
     2581 aatagtgata ttaaaaatat acaaaattta gctctaagtc ttatttttca ttatgattta
     2641 gaagataagg ctaaggagtt tttagcaaaa attccaaaaa tcaaacttga aaaccttaaa
     2701 aaaatttatt ctcattctaa cttgcaaacg agttctttag gacgcattat cgatgctttt
     2761 ggaagtattg tttttaactt agaaaaaagt tcttatgaag ctcaagttgg cttaatgtgt
     2821 gaggcttttt atgataaaaa tcttgatttt tcttacaagc tttttgtaga aaaagggcag
     2881 gttaatttta aaaatttaat cctaggggct ttacaagatg aaaaaactaa ggcaattaca
     2941 ggtatgttta atgccttggc aaattttatc atagatttta gcaaagatta tgatttaaaa
     3001 gtgcttttaa gtggaggagt ttttcaaaac aaaaccttac ttgaaatttt aaaagctaaa
     3061 aattttgatt tttttatacc tttaaaatac ccttgcaatg atagctccat agctttagga
     3121 caaatggtgc attttttaaa aaaagagtga ttttatcttt aaactcataa ttttttaatg
     3181 cttttaaggt taaaatgaaa caaaaaatat aaaggaaaga aaatgtgtaa agattgcggc
     3241 tgctctataa attcaagcca tacgcatgat catcatcacg atcaccacca tgaaaatcca
     3301 agtttaaaag aaagtaaaac catagaagta atttctaaaa ttttaagcaa aaacgatgaa
     3361 gaagctaaac acaatagagc gcattttaat gaggctaaca cgctttgtat caatttaatg
     3421 agttctccag gtagcggaaa aaccacgctt ttagaaagca cgatcaaggc tttgaaaaat
     3481 gaacttaaaa ttgctgtgat tgaaggggat ttagaaacca ataatgacgc cctaagagta
     3541 aaaaatgccg gagctttggc gtatcaaatc actacagggc aaagctgtca tttggatgct
     3601 tttatggtgc atgaggcttt gcatcattta gtcattgatg atgtggattt gctttttata
     3661 gaaaatgttg gaaatttggt ttgtcctgca agttatgatt taggagagca tttaaatgtg
     3721 gttttgcttt cagtaaccga aggaagtgat aaaccgcaaa aataccctgt gatgtttaaa
     3781 aaggctgata tagttttaat cacaaaggca gatttggctc atcattttga ttttgatgtt
     3841 aaagaggcga ctaggttgat taaagaatta aatcctagag cagatattat cactcttgat
     3901 gcaaaaaatg gcaccaatat ggagctttgg tataaggtgc ttaaacttaa aaaggagctt
     3961 ttttaatgtg tttgtctata ccttctgaaa ttttagaaat cgatgagtta aacaatgctt
     4021 tagtgcaaac tttaggtgtg aaaagaaaag ttaatttgga tttgattgat gagcctttaa
     4081 aacaaggcga ttatgtgtta atccatgtag gcgttgctat ggaaaaaatc gacaaagaag
     4141 ctgcactaga aagcattaaa acctatcaag aaatagtaga aaaaatgaat agtggagaga
     4201 taaaaagtga tgaaggagat ttgggtttaa atgaatttca tcgatgaatt tagagataaa
     4261 gaaagcattt tagctttaaa aaaactcata gaacaagaac ttaaaaatcc tatcaatatc
     4321 atggaaattt gcggtgggca tacgcatagt attatgaaat atgccctacc ttctattttg
     4381 ccaaaggaaa ttaactttat ccatgggcca ggatgtcctg tttgtgttat gccaagagtt
     4441 cgcattgata cagctatcaa gttagcctcc atgaaagata cgattttttg tactttagga
     4501 gatcttttaa gggtgcctgg aagtgaaatt tctctgcttg atttaagagc taaaggggct
     4561 gatgttagag cgctttattc tccacttgag gttttggaaa tcgctaagca aaatttaaac
     4621 aaaaatatca tcttttttgc tataggtttt gaaactacta cgcctatgag tgctttactt
     4681 cttcaaaagg ttatagaaga aaaaataaat aatgtctttt ttcatatcaa tcatatcaca
     4741 gttccagcgc ctgtagaagc gatcatgaat gatgaaaatg taaaaatcaa tgctttttta
     4801 ggcccttctc atgtgagtgt gattacaggt tatggtattt atgagccttt agcagcaaag
     4861 tttaaaaccc ctatagcggt gagtggtttt gagccagttg atattttaga aagtgtgtta
     4921 aatatcataa aacaaagcaa tgaaggcact tttaaagtgt ataatcaata caaaagagcc
     4981 gtaagtaaag aaggtaatgt taaagcacaa aatttagtaa aaaaatactt tagggtgtgt
     5041 gattttgaat ttcgtggctt agggcttatt aaagatgggg gcttggaact aaaagaagaa
     5101 tttagtgctt atgatgcgag taaaaaattt gattgtacgg tgcaaagtaa aaatgaaagc
     5161 aaagcctgta tttgtgggca aattttaaga ggtttggcca agccttatga ttgtaaagtt
     5221 tttggtaagg cttgtacgcc aagaagtcct ataggaagtt gtatggtttc tggcgagggt
     5281 gcttgtgcgg cgtattataa atactcaaag gtgaatgtat gaaaaatatt tccttagccc
     5341 acggaggtgg cggagaagag atgaacgagc ttttaactaa gctttttaag atctttgata
     5401 atgaaatttt aaatgcaaat aatgatgcag cgattttagg aaatttggct ttaagcacag
     5461 attcttttgt tttaagtccg atttttttag atgaagaggt taatatagga aaactttgtg
     5521 tttgtggttc tattaacgat gttttgatgg taggtgctaa gccaaaatat ctaagtttag
     5581 ggcttatctt agaagaaggt tttgagctag aaaaactaga acgcatttta aaaagcatta
     5641 aagaagaatg tgaaaaatgc ggagttatgt tagtttgtgg cgatactaaa gttgttccta
     5701 agggcaaagc agatgaaatt tatatcaaca ctacggcctt aggtgaaatt atttctaaaa
     5761 aagaaagtaa aaatatcaaa gcagggctta gcatacttct ttcaggtgat ataggaaggc
     5821 atggagctag tgttttaatc aaaagaaatg agttagaagc tgatgttaaa agtgattgta
     5881 aggctttgga taaagaggtt ttagagcttt tagaaaaaga tataaaggtt gtagcaatga
     5941 gagatgctac tcgtgggggg cttagtgcgg ttttaaatga gtgggcaaag caaagcggaa
     6001 atgatctttt gatctttgaa gaaaaaatca tcgttcaaga tgaggtttta ggactttgcg
     6061 agctttttgg ttatgaagct tatgaacttg caaatgaagg cacttttata ctttgtgtgg
     6121 aaaaagaaga tgagttaaaa gccttggaaa ttctaaaaaa atacaatgta aatgcgagta
     6181 ttataggaga agttttagaa gagaaaaaag cacgcgtgat cttacaaaac gcttatgggg
     6241 caaaacgctt tttagaaagc cctaaaggcg aacttttacc aagaatttgt taatgcacga
     6301 attaagtata gtagaatctt taatcgaact ttgtgaagaa aatgccttaa acaataaggc
     6361 ttgtaatgta caagaaattt atgtaaaaat cgggcgttta agcggtatag aagcggatct
     6421 ttttaagcgt tgttttgaaa cttttaaaga aaactcaaat atttgtaaaa atgctaaact
     6481 ttttatagaa cttgctccgc ttgaaatttt atgcttaaaa tgcgataaaa caagtatttt
     6541 agaagaaaat gtttttaagt gtcctaaatg tcaaagtata gaatataaaa tcacacaagg
     6601 tgaggactta caccttatgc gacttgtgat ggagtgagtt agtttttcaa aatccttgca
     6661 agtttaagca aatttgaaat taaaaattct ttttttacga gcttagaatt ggttttaagc
     6721 tcgtattcgc ttttaagtaa aagagtgaaa atttctttat attgttcgat ttttaaacta
     6781 aaggcttgag agcttaaatt ttgtcccact tgaggaggtg gagtatagcc taaaagatct
     6841 ttaaagtcaa ttttaccatt gactttagca taaagtgcga ttttaaataa acgataaaaa
     6901 gaattatata aagagttgat taaagcaatt tcattaaaat tgtctaaaat tttttcaagt
     6961 tcgcttttaa agtcttgttt ttttaaaatt ttctcaaaaa agctttcaaa acttcctgta
     7021 ttcaaactat agcagtattg ttctatggtt ttttcatcta ctcttaaacc gctaaattta
     7081 ttaagttcac tcgcagcaag atataaattt tcatcaaaac ttgtaaaaag ggtaaataaa
     7141 gcattttgag tgatttcaac ccctagttgt tttgctttta tgcttaaaag ctccacgcct
     7201 tctttagctc cgttagcttt aaaaaatctt gcaaaatgag gagagaaaat tttttctatg
     7261 tcgctttgct ttgagttttc atcataaagc tctaaaagaa agaaattgtc cgtattgttt
     7321 ttgcaaagtt cgactaaaat tttaagatct tttgttggaa tttttttaga agttttgatt
     7381 tctagtaatt ttttttcgct aaaaagcgat cctgcgctta aaaaatcact cgcacgagtg
     7441 aagttgtatt cttcaaaaaa aagttttaaa gtttcatcgg gcttatattt ttcttttata
     7501 aattcagcat aaagttcgct ttgaaaatta tccgctccat aaagaaagaa aaaattaggt
     7561 attgaatctt tagaaagtag ggtttgaagc tcttttctat acattttctt cctttatgag
     7621 tctttgggtg attttagcat aaatttttgc cataactata tccgcttcca tgatttgcac
     7681 ttcaacattt tctagtaaat ttacacgtgt atcataaagg attatatctg ctcctttgat
     7741 ttcatcatct agtttagcta tgcaaactcc atcattttgc acaactaaag ctttaaattt
     7801 tttgcctata tttttagctg cccatctagc aaattttcta tccataaaat caaaagcaac
     7861 cttatccgcc tctctttcaa gtgtgctaag attctcgcaa gtgctttcta tgtttaaaag
     7921 tagataatta aaaagttttt catcgttttt ttgtttggct tttaaaagtc tgtgtaaaat
     7981 aagatcagaa taccttctta tagggcttgt aaaatgtgag tatttatcaa aacctaagcc
     8041 aaaatgcccc gcatttatgc tagagtattc cgcttttttt tgtgctttga tgatgagttt
     8101 atctacttct gctcttaaat ttaactcatc ggataaagct tgtatgtcgc gtatgagttc
     8161 aggaagattg ggtttaaaat ttacatcgat gcctagttcg cgtaattcat ttaaaagctt
     8221 atcgattttt cttgcatcag cacttaagtg atttctaaaa acacctatat ctatgagttt
     8281 tgctgcggct ttattagcta aaagcataca atcttcgatt aaattatgcg aaggcgtgtc
     8341 tttttcaaaa actgtgcttt ttagacttaa attttcatct aaattcattc ttaattcttc
     8401 ggtgcgaaat tcaaaggcat ttttaagacg cattttgcgt aaattttttg tgatttcaaa
     8461 aagctcataa agccatgaaa gctcttttaa atcaggtttt tgtatcaaaa tttcatcaac
     8521 ttcatcgtaa ttaaaacggc gttttgaatt gataatacct tcaaaaagtt cttcttttat
     8581 gactttattt tcatgatcga gtgtgatttt aaaacaatac gctaagcgat ctaaatgagg
     8641 ttttaaagaa cagatatttt cacttaaagg acgcggtagc ataggtatag caatatgtgg
     8701 aaaataaata gaaaatccac gatttcttgc ttctttatct atagcactat aagcataaac
     8761 atattcgcta acatcagcaa tagctacata aatttctcgt ttttggatgt caaaataaat
     8821 cgcatcatca aaatcttttg catgtatagg atctatggtg caaaaaggca aggctcttaa
     8881 atccatgcga ttttcataca tactcgcatc aacactatcg ccgtttgcta gagcttcttt
     8941 gatacaagcg tcgctaaatt cgttattttt attaaaaaga gctaaggaga ttttttcatc
     9001 tacgctttca tcatcgatat gtcctaaaac ttctatgata ttgttatttt cattttctat
     9061 ttttaaaatt gtccctaaag gtagtgcttt taaggatttt tgagaagctt ttaaggcagt
     9121 gcttaatcct gttttgatat tcattccaag cacggcttcg ccgtaccttt tggtgattac
     9181 taaagaggtt tcattggctc tttttagaac taaaatcacc tttgcactag ggcgtttttt
     9241 ctttaaaggt agaagtttta ctgcgactat atctttatag tttgcacctt ttaggttttt
     9301 gttttctatc aaaagatctt ttttgaaact ttcatcaaag cattgtaaaa aacctgtgcc
     9361 tttgcttgaa atatcaagca ctccaaaggc aaaaccatta ttaagataat atttgttttt
     9421 gtgttctttg atgatatgac tagctaaaag ctctcttaaa atttgtttaa attcattgct
     9481 tgcttcatga gggctaatgc cataactaag actgtttaaa aattctttca cttttgatac
     9541 tttatgattt tttgtaaaat tcttacataa agtttataaa aaaaatatga aatttatact
     9601 ttaattgcta taataatacc tttaattttt gaatttttaa ggagtgaata tggctattac
     9661 agtatattat gataaagatt gtgatttaaa tttaatcaaa tcaaaaaaag tagcaattat
     9721 aggctttggc tctcaaggac acgctcatgc gatgaattta agagataatg gcgtaaatgt
     9781 aattatcgga cttcgtgaag gtagtgtaag tgctgttaaa gcaaaaaatg ctggttttga
     9841 agtaatgagt gtaagtgaag cttctaagac agcagatgtg gttatgattt tagctcctga
     9901 tgaaattcaa gcagatattt ttaatgtcga aataaaacca aatttaagtg aaggcaaggc
     9961 tatagctttt gcgcacggtt ttaatatcca ctatggtcaa attgttgctc caaaaggtat
    10021 agatgttatc atgatagcac ctaaagcacc aggacacaca gtaagaaatg aatttacttt
    10081 aggaggtgga actccttgtt taatagccat ccatcaagat gaaagtaaaa atgctaaaaa
    10141 tttagcctta agttatgcaa gtgcgattgg gggcggacgc acaggtatta tagaaacaac
    10201 ctttaaagcc gaaacagaaa cagatctttt tggtgaacaa gctgtgcttt gtggtgggct
    10261 tagtgctttg attcaagcag gttttgagac tttggttgaa gcaggttatg aacctgaaat
    10321 ggcttatttt gagtgtttgc atgaaatgaa actcattgtg gatttgattt atcaaggtgg
    10381 tattgcagat atgcgttatt ctatctcaaa tactgcagaa tacggcgatt atattacagg
    10441 gccaaagatt attactgaag agactaaaaa agcgatgaaa ggtgttttaa aagatataca
    10501 aaatggtgtt tttgcaaaag attttatctt agaacgccgt gcaggttttg ctagaatgca
    10561 tgcagaacgc aaaaatatga atgattcttt gatagaaaaa acagggcgca atttgcgtgc
    10621 gatgatgcct tggatcagtg ctaaaaaatt agtagataaa gataagaact aaacattgtc
    10681 aaagaaaaaa ttagttcaaa ttcagcgtta tttaatcata gctatacttt ttttactttg
    10741 tatagcttta gctttgggaa ttttagtaaa atatcaaaat tcccaagatg tttcttctgt
    10801 taagccggat tattttattg ataaacaaga agatttaatt tcatcaaata aagatcatta
    10861 tgaaattggt atttttcaag agaatgagtt tgataataat aaatttgtaa gtattttaga
    10921 gcaaaaaatt caagaaatcg atgatttaaa tacaagttta aatgagcaaa atttaagcag
    10981 tgtggagcag aatttaagtt tagagcaaaa tcagagtttg gaacaaaatt ttattccaaa
    11041 agatacaaat ttaacccaag atcaaaattt aacttttaat gaagatattc atttaaataa
    11101 aatttctaaa aaaccaaaac ttgctattat tatcgatgat atggcaaatg caagtcaggt
    11161 tagaggttta aaagctttaa atttaaagtt aaatccttct ttttttccgc cagataaaaa
    11221 ccatagcgaa acgccaaaac ttgctt
//
LOCUS       DAEBKH010000043        11218 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.043, whole genome shotgun sequence.
ACCESSION   DAEBKH010000043 DAEBKH010000000
VERSION     DAEBKH010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11218)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11218)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11218
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.043"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..182)
                     /locus_tag="KIL20_000794"
     CDS             complement(<1..182)
                     /locus_tag="KIL20_000794"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720834.1"
                     /translation="MNEKNIVLLGGSNSVMVNGLQKGLKEGIEKFNTTVNKEQEKLKF
                     YNLALGASSSLQNLYEL"
     gene            257..1576
                     /gene="rimO"
                     /locus_tag="KIL20_000795"
     CDS             257..1576
                     /gene="rimO"
                     /locus_tag="KIL20_000795"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HBD2720835.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPSKADVLIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNFHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            1566..2531
                     /gene="tilS"
                     /locus_tag="KIL20_000796"
     CDS             1566..2531
                     /gene="tilS"
                     /locus_tag="KIL20_000796"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HBD2720836.1"
                     /translation="MQIKDEILALLKKGKNLLAFSYGSDSSALFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKHAPKFQSNFEKKARDFRYEFFEKICFEQ
                     DYDHLILAHHLNDQFEWFLMQLSRGAGLAEILGMQECEKRQNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKRSFSYLDKDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKELLKGDCVLGGKIALVYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRFLRAYLYNHKIDISSLSF"
     gene            complement(2514..3227)
                     /locus_tag="KIL20_000797"
     CDS             complement(2514..3227)
                     /locus_tag="KIL20_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HBD2720837.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLVLMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYTLHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYNNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVASTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLGYQRILKLKAKA"
     gene            complement(3229..3918)
                     /gene="dut"
                     /locus_tag="KIL20_000798"
     CDS             complement(3229..3918)
                     /gene="dut"
                     /locus_tag="KIL20_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HBD2720838.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFTWKHWKNISSPTNWENVRIEIVDIWHFILSLLLEEYRDKNGKDLKAIA
                     TEVNAVSVFQGFCKEEEHPNEGDIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNHGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEEYYKKA"
     gene            complement(3955..4518)
                     /gene="ciaI"
                     /locus_tag="KIL20_000799"
     CDS             complement(3955..4518)
                     /gene="ciaI"
                     /locus_tag="KIL20_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HBD2720839.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSVSYTNNEEGKTL
                     NLKRQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDENHQNAIMNNFTNKLSDLLKQNQTDDKDINASMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            4593..5000
                     /locus_tag="KIL20_000800"
     CDS             4593..5000
                     /locus_tag="KIL20_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720840.1"
                     /translation="MDERILEFIKNEQLLSWAVIDEKGAYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQMKIYFSKFPFAK
                     LDKSAKIYALELFWLKFTNNALGLSKKLEFCKK"
     gene            5072..5854
                     /locus_tag="KIL20_000801"
     CDS             5072..5854
                     /locus_tag="KIL20_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD2720841.1"
                     /translation="MLNVIHALFFRELKTRFGANRHLGYLWVVGEPMSITLAITAIVT
                     IIREYHHQVMPEGISIFMFLISGIMPYFMFRSIVTQLMNGTQANLALFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFVGWFFRFDVFPVHLLGVLFCIFLLMCSAFALGVCFA
                     IIWHFVEPLRTLLTYFSIVFYWTSGVILPTWLTPRPLLDILYYNPLLHIFELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFVYYYNRQALTAVKKE"
     gene            5851..6513
                     /locus_tag="KIL20_000802"
     CDS             5851..6513
                     /locus_tag="KIL20_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD2720842.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGGNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGQE
                     LQEKVKFVEDFAELGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHDVAEIKEWCDKIIYMKNGQITVYDDVDEGIAAYQG
                     KA"
     gene            6513..7631
                     /locus_tag="KIL20_000803"
     CDS             6513..7631
                     /locus_tag="KIL20_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HBD2720843.1"
                     /translation="MEENKTLLEKIKDLGIFDSFKIVWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTSGILSLLSNTSTASEDLNYLKGYIESSDMLKILDEKIKLKSL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKIYSDKTTGLLRVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMVFAENEVQKYKERYQKAQNDLIAFQNKYGVFNPLKQA
                     ETKASLVAQIEANLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIESTFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIAKFIKMIIEEHKY"
     gene            7633..9291
                     /locus_tag="KIL20_000804"
     CDS             7633..9291
                     /locus_tag="KIL20_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HBD2720844.1"
                     /translation="MKKILILFFSCILCFGAVDVSQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKIAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKAHVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVNAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKGVARTQKELINAQLKELETLALT
                     SSSVTAQGAAIRAQQAKTILEFIQRAKQVQPKGQIVIDNPKSYGSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKPGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            9301..10248
                     /locus_tag="KIL20_000805"
     CDS             9301..10248
                     /locus_tag="KIL20_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HBD2720845.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLSKNLDENFNQAINLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPEDALIAISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQGDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKARNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKASDKPRFDFKAKEIMSTNPKVVDA
                     DAMASEAEEIMLKYKIKEIIVGKEEKVVGIIQLYAIGNV"
     gene            10248..>11218
                     /locus_tag="KIL20_000806"
     CDS             10248..>11218
                     /locus_tag="KIL20_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HBD2720846.1"
                     /translation="MALLSVIIPFGLSKERPYIEERVLQKAKSFQSDENIEFIFVEGY
                     SSKNHELKNFIQTNHHIYLKDMNQKAFSQGRCRNLGASYAHSNVLLFLDVDCYISLDN
                     FEKILKLVQIKNISQNINALVVLPVVYLNKDANEKLKQYDEKFWDILIQEDLFTAKNT
                     WVKFFAPSSTSSIVINKHQFLRLGGNDENFIGHGYEDFDLFARILKACVSFEKMPTNL
                     SYDARNWNFFNFKGFRSWFSLLGHEACFYGIYMYHFYHVEPNQNAYMQNKDKNHQLFY
                     KHLKNIKKHDLKPLQVFKAKGEKVLMLFKDQNYDFKDISVYVGETIY"
BASE COUNT         3940 a         1412 c         1969 g         3897 t
ORIGIN      
        1 agttcatata aattttgtag cgatgaagat gctcccaagg ctaaattata aaattttaat
       61 ttctcttgct ccttgttgac agtggtatta aatttttcaa taccttcttt taaccctttt
      121 tgtagcccat ttaccattac agaattactt ccaccaagta aaactatatt tttttcattc
      181 ataaattttt cctaattatt attttgatat gattttaagg aattatttta tcaaaaaatt
      241 taaaaaagtg agaaaaatgt caaaacttta tcttatgtct ttaggttgta ataaaaattt
      301 agtcgatagt gagattatgc taggacgtct tagtgcttat gagctttgcg atgaaccaag
      361 taaagccgat gttttgatcg taaatacctg tggttttatc gacagtgcaa aaaaagaaag
      421 tattaatgcg attttggatt tgcacgaaca aagaaaaaaa gattctcttt tggtggttac
      481 gggttgtttg atgcagcgtt accgcgaaga acttatgaaa gaacttcctg aggttgatct
      541 tttcacaggt gtgggtgatt atgaaagaat cgatgaaatg atacttaaaa aaacaaattt
      601 attttcaaat tcgacttatt tgcaaagtga aaattccaaa cgtattatca caggttcaaa
      661 tttccatgct tttataaaaa tcgccgaagg ttgtaatcaa aaatgctctt tttgtgctat
      721 cccaagtttt aaaggcaagt taaaatctcg cgagataagt agcattatag ctgagcttaa
      781 agatttggta gctagaggtt ataaggactt ttcttttatt gcacaagata cgagttctta
      841 tttgtttgat aagggtgaaa aagatgggct tatacgctta atcgatgagg tggaaaaaat
      901 caaaggcata agagcggcta gaattttata tctttatcct acgagcgcga gtgaagcttt
      961 gatcaaacgc attatagctt ctgaaatttt tgtaaattat tttgatatgc ctttgcagca
     1021 cataagtgat aatatgctta aaatcatgaa gcgtggggca aatagtacaa gacttaaaga
     1081 aatgctaaat ttaatgaaaa gtgcgccaaa tagcttttta cgcacaggct ttatcgtagg
     1141 gcatccaggt gaaagtgagg cagattttga agagctttgt gagtttgtta aagattttgg
     1201 ttttgatagg ataagcgttt ttgcgtattc taaggaagaa gatacggccg cttttgatat
     1261 ggagcaagtg ccttttaaag tgatcaataa aagacttaaa atcatagaaa aaattgttga
     1321 tgaagtgata gaaaaaagtt ttgaaaaaga agtagggcaa aagcgtttag tagtttgcac
     1381 aggagaaagt agcgagggag agttttttat cgcagctaaa gatttaagat gggatagaga
     1441 gattgatggg gaaattctta tcaatgaaag tgaatgtgga aatttagaaa tggggcaaat
     1501 ttatgaatgt gaaattttac aaaaccttga taaaaagctc cttgctaagg ctttaagaaa
     1561 agtagatgca aattaaagat gaaattttag cccttttaaa aaagggtaaa aatttactcg
     1621 ctttttctta tggaagtgat tctagtgcgc ttttttatct tttaatgcaa gaaaagatcg
     1681 actttgatct tgtgatgatc aattacaaaa ctagaaaaaa tagtgattta gaagagttaa
     1741 aagccaaaga gcttgctttg aaatttcata aaaaaatttt cataaaacac gctcctaaat
     1801 ttcaaagtaa ttttgaaaaa aaagccagag attttcgcta tgaatttttt gaaaaaattt
     1861 gttttgagca agattatgat catcttatct tagcgcatca tttaaacgat caatttgaat
     1921 ggtttttgat gcaactttca cgaggtgcag gtttggctga aattttaggt atgcaagagt
     1981 gcgaaaaacg ccaaaattat acacttttac gccctttact ctttataagt aaagatgaaa
     2041 tttcatcttt tttaaaagaa aaagatattt tttatttcca tgatgaaagt aatgaaaatg
     2101 aaaaatattt tagaaattat ataagaaaaa atttctctaa tgcctttgtg agtgaatttc
     2161 atcagggttt aaaaagaagt ttttcttatc ttgataaaga taggaaaaaa ctttatgatt
     2221 ttgaaaatat caaagaaatt caaggacttc ttatttgccc taaaaatgaa agtttgattg
     2281 ctagagcggt gaaaatgaaa ggtttgcttt taagcacggc acaaagaaaa gagcttttaa
     2341 agggtgattg tgttttaggt ggcaaaatag cacttgtata taaaaacgaa caagctattg
     2401 tttttgagta tgaaacttgt caaaaattac ctaaaaattt taaagaagag tgtagaatag
     2461 ctaaaattcc aaggttttta agagcttatt tatacaatca taaaatcgat atttcaagcc
     2521 ttagctttta gttttaaaat tctttgatag cctaaatgtg tgagaaaaat cacaaaaaac
     2581 acttgcaaaa aaagtcctaa aagtggtact gatgagagta gataaaaaca aagagtacta
     2641 aatttaaact ctaaaggcga aaaatcagaa tgaaaatttt taaaactttc tttgtctaaa
     2701 atcgtgcttg caacatcaat cattaaaagt ttgtgaaaga gataataaaa agcaagataa
     2761 tatacaaaaa tattgataaa aggtaaaaat aaagccaagg tgcaaagcaa taaaatccct
     2821 ataaatttta taaatatttt aaaaatttca aagatagttt ttagggttga aacttcgttt
     2881 gtattattat aatggtaata tttttggttg atttctttag cgataaaagg agtaagaaaa
     2941 gaagtgataa aaagggctaa aaaaaccgaa gcaaaaacaa caataaaacc tgaaaataaa
     3001 aaacttatga tggtgattaa aatttgtaca aaatgaaggg tataaaacca cgcccaaaac
     3061 gaatcctctc caacgctaaa taaagaatta aaataatcca gcaaggccga aaagccaagt
     3121 actcctaaaa aaagcatcag tacaaggcta aaaattaaag gaattaaggc aaattttaaa
     3181 aatttaagac ttaaaaaatc tttgattgca agttttaaaa tatccaaatt atgccttttt
     3241 gtagtattct tctagttttt tataaatagt atcaaaatca agctcttgtt ctaaaatttg
     3301 agctaaaact tcattgtctt ctttgccatt ccaagttttt ttatagctac catctttgta
     3361 accatggttt tgtctaaaga tatttaaaac atttttacct atgtaggttt tataaagaat
     3421 ttcaagatta agcccacatt taatagctag ggtaaaatag gttgaaagta attctccaag
     3481 attaaatcca aaaccactgc atttatggat aataagctct atatcattta aaatgccata
     3541 aatatcaccc tcattaggat gctcttcttc tttgcaaaaa ccttgaaaca cacttacagc
     3601 attaacttct gtagctatag ctttcaaatc ttttccattt ttatcgcgat actcttcaag
     3661 caaaagactt aaaataaaat gccaaatatc gacaatctct atacgcacat tttcccaatt
     3721 tgttggactt gaaatatttt tccaatgttt ccatgtaaaa gagtctataa gttctgcaca
     3781 ttccatataa atacagcgtc tccaactgat cagttttcct tctttggtgt agccattttc
     3841 ccaatttaag ccgtttgttt catcgttgag tttttgttgg agtttgagca tattttctaa
     3901 aatttcgata tttgtcattt aaaaactcct tgataatttt taatattata tgatttaagc
     3961 gtaaagattt aaactatcat ctgtcttatc ttgattttcc ttggcttttt cttgttgttt
     4021 ttcaagttgt tttttcattt gttctaaaac ttcatcaaga agttttttgc tatcttcaag
     4081 catggaagca ttgatatctt tatcatctgt ttgattttgt tttagtaaat cactgagttt
     4141 atttgtaaaa ttattcataa tagcattttg atggttttca tcatttggtg ttggtagaac
     4201 atttgccatt tgcatagctg attctataat ttcttttggc tttaactctc cgactttaga
     4261 atttgccaaa aagtctttga tcataggttc aacttctttc atagcatttt taatctcatc
     4321 aagatcattt tgcgtgagct tagagccttc aaaagtaaag ctaaagccat actgacgctt
     4381 aagattaaga gttttacctt cttcattatt tgtataactt acgctttgat tgtcatacat
     4441 agataaggct aaatgtttgc cactttttgt tgtataatcc atcgaaaaac tttggttttt
     4501 gctagcatca atttgcattt cttcccctta tatttatagt ttaaattaaa aatcggttat
     4561 ttttaaaaat attttagtat aatttttaca atatggatga aagaatttta gaatttataa
     4621 aaaatgagca gcttttatct tgggctgtga ttgatgaaaa aggtgcttat acagctagtg
     4681 ctttttatgc ttttgatgag aagaatttag cttttattat cgcttctcat gaagatacta
     4741 agcatataag attagccagt gaaaattcaa gtatagcact taatatagcc aaagaaagta
     4801 aaatagcctt tttaaaaggt gtgcaagcta aggccgagtt taaaatggca agtaaggagc
     4861 aaatgaaaat ttatttttct aaatttccct ttgctaaact tgataaaagt gcaaaaattt
     4921 atgccttaga gcttttttgg cttaaattta ctaacaatgc tttaggactt agtaaaaagc
     4981 ttgagttttg taaaaaataa atttttatga ttttgtttaa aaaaatgagt tatgattatg
     5041 gtttatgtaa attgttaggt atagaaaata aatgttaaat gtaattcatg ctttattttt
     5101 tagagagtta aaaactagat ttggtgctaa taggcattta ggttatcttt gggtagttgg
     5161 agaaccaatg tcaataacac ttgctatcac agcaattgtc actattataa gagaatatca
     5221 tcatcaagtt atgcctgaag gaatttctat ttttatgttt ttaatttcag gtattatgcc
     5281 ttattttatg tttagaagta tagtaactca acttatgaat ggtactcagg caaatttggc
     5341 tctttttgct tataaacctg taaagcctat acatgtattt attgctagaa ctttgcttga
     5401 gttttgtatt tattttgtga tttttatcac tgtgcttttt tttgtaggat ggttttttag
     5461 atttgatgta ttcccagttc atttacttgg agttttattt tgtatttttt tacttatgtg
     5521 ttcagctttt gctttggggg tttgttttgc tattatttgg cattttgtag agcctttaag
     5581 aactttatta acttatttta gcatagtgtt ttattggact tcaggtgtta tacttcctac
     5641 ttggctaact cctcgtcctt tacttgatat attatattat aatcctttac ttcatatttt
     5701 tgaactttta agatttaatt tttttgagaa ttatcctttg caagatgaat atagttattt
     5761 ttatgctata ttttggattt tacttgtttt atttatagga ctttttgtct attactataa
     5821 cagacaagct ttaacggcgg taaaaaaaga atgataaagc taattaatct aactaaatct
     5881 tatcctttat ttagcggtgg aagacattat gtttttaaaa attttacttt tgaatttcct
     5941 gaaaattgta gtataggatt gatggggggt aatggtgcag gtaagtccac tctcatgaga
     6001 cttttaagcg gggcagagct tcctgatagt ggtaaaataa ttaccaataa aaaattatct
     6061 tggcctttag gtttaaatgg agcttttcaa ggttctttaa ctgctagaga taatgctaaa
     6121 tttgtagcta gagtatatgg ttataaagga caagagcttc aagaaaaagt aaaattcgta
     6181 gaagattttg cagagcttgg gaaatttttt gatgagccta tgaagactta ttcttcggga
     6241 atgagtgcta ggatagcttt tggacttagt atggcctttg attttgatta ttatttaatt
     6301 gatgaagctg gagctgttgg agatcctgct tttagggaaa aaagcgtgaa attatatagg
     6361 gaaagattaa gcaaatcaaa agtgattatg gtatctcatg atgtagctga aattaaagaa
     6421 tggtgtgata aaataattta tatgaaaaat ggacaaatta cggtttatga tgatgtagat
     6481 gaaggaatag ctgcgtatca aggaaaagct taatggaaga aaataaaact ttattagaaa
     6541 aaattaaaga tttaggtata tttgattctt ttaaaattgt ttggtttata atgatttttg
     6601 ttgtgattta ttatacattg attgcagcac caagatatgt aagcacgatg attttagatg
     6661 ttagatcaac aagtggagaa agtgctcaaa caagtggaat tttatcttta cttagtaaca
     6721 cttctacggc aagtgaagat ttaaattatc taaaaggcta tatagaatca agtgatatgc
     6781 taaagatttt ggatgaaaaa atcaaactta aaagtcttta tcaagaacaa catatagatt
     6841 tgccttttaa aatttgggat tcaagttcga tagaatctta tcttaaatac taccaagcaa
     6901 gagttaaaat ttattctgat aaaacaacag gattgttaag ggttgaagta gagggtttta
     6961 cacccaaatc agctcatttg attgctcaaa ctattatgca agaaagtgaa aagtttatca
     7021 atgaaatttc tcataaagca gctagagagc aaatggtttt tgctgaaaat gaagtacaaa
     7081 aatacaaaga acgatatcaa aaagcacaaa atgatttgat tgcttttcaa aataaatacg
     7141 gagtttttaa ccctttaaag caagctgaaa ccaaagcgag tttggttgca caaattgagg
     7201 ctaatttagc tcaaaaagaa gctaaacttt taactttaca aagttatatg aatgatgcag
     7261 cacctgaagt agtagcactt aaagcagaaa ttgaagcaat caaaaaacaa cttttaaggg
     7321 aaaaatctaa aatttcagcc aacaattctt ctcaaaagct taacgatttg gctgctaaat
     7381 ttcaggattt aactatagaa tctacttttg cacaaaaagc ttatgaggca gctttaaaag
     7441 cttatgaaag cgctagaata gaagctttaa ggaaaataaa acaacttgtc atcatccaaa
     7501 gtccagatat tccagaaagc gcaaaatatc ctgagagaat ttatgatatt ttaacagcgt
     7561 ttattgtatt atctttgatt tttgggattg ctaaatttat taaaatgata atagaggagc
     7621 ataagtatta aaatgaaaaa aatattaatt ttatttttta gttgtatttt atgttttgga
     7681 gctgtggatg tttcacaaat catttcagcg gaagatcaag gttctactac aactagtata
     7741 gatcaaaatt taagctcaaa ttatgatata gcaaataaag aaaataatct tacaaaaatt
     7801 catcaaattt tagtatttgg tgctcatctt tttaatggaa attttaaaaa ttacaatcaa
     7861 agagtttata acccagatta taagatcgca gttggtgatc aaatcagtct taaaatttgg
     7921 ggagctgttg agttttcaca agttttagta gtggattctc aaggaaatat ttttatccct
     7981 aaagtaggag ctgtaaattt actaggtgtg aaaaatagtg cccttgtaag tgttataaaa
     8041 gcacatgtta ataaaatcta taaaagtaat gtttttgttt atgcagatat gaatgcttat
     8101 caaaatgtca gtgtttttgt aacaggaagc gttaatgctc caggacttta tcaaggactt
     8161 agttcggatt cagtgatcca gtatcttgat aaagcaggag gtataaattt agaatatgga
     8221 agttttagag atattcaaat tttgcgcaat aatagtgtga taaaaaatat cgatttatat
     8281 gattttttac taaaagggca aatggatctt tttcctttta gaagcggaga tgttatttta
     8341 gtaggaaatg ttcaaaatta cgcttttgtt aacggtgatg tgcaaagacc ttttcgtttt
     8401 gaactttcaa atgatattaa aactttagct gacttagcta gagtatcagg tgctaaacct
     8461 attgtaacta atgccatcgt aaaaagttat ggtgaagatc ataaacttga tgtcaatgct
     8521 tataataaaa tgcaattttc aaaagttttg cttagaacgg gagatgaggt agaatttcat
     8581 cctgagtatg tttctgaaaa tataactata agcgtaaatg gtgagcataa tggtttaaaa
     8641 actttagttg tgggtaaagg aacgacttta gaagatattt ctaaactaat taaggctaat
     8701 ccacaatcaa acatgcaagc tttgcaagta tttagaaaag gtgtagctag aactcaaaaa
     8761 gaacttatca atgctcagct taaagagctt gaaactctag ctttaaccag cagttctgtt
     8821 acagctcaag gtgcagctat aagagctcaa caagcaaaaa cgattttaga atttatccaa
     8881 agagctaagc aagtgcaacc aaaaggtcaa attgtcatcg ataatccaaa gtcttatggc
     8941 tcggttatat tggaagatgg tgatactatt aatgtgccaa gtaagaataa tctcatcata
     9001 gttcaaggcg aggtttcttt acctggggct tttgtgtatg ataaaggaaa agatttaaga
     9061 tattatatca atcttgcagg aggttatgga gaaagagcgg atacttcaaa agttttggtg
     9121 atacgaagca atggaaaagc tgaaaaatat catagtggta tagatatgaa accaggtgat
     9181 tctgtgttgg tattgccaaa agtagatagt gagaatttgc aaattttttc aatgttaact
     9241 caaattcttt atcaaattgc tatcgcaacc aatgttgtgc ttaatcttta aggtttaaat
     9301 atgaatactc ttgaaatagc caaagaagtc tttgaaaaag aagcacaagc tattttggat
     9361 ttgtctaaaa atttagatga aaatttcaat caagctataa atttgatgtt aaatactaaa
     9421 gggcgttgca tagtcagtgg aatgggtaaa tcaggccata taggcgctaa gatagcagct
     9481 actttagcaa gtacaggaac gccaagcttt ttcatccatc caggagaggc tttgcatgga
     9541 gatcttggaa tgttaacccc tgaagatgct ttaattgcta tttcaaattc aggagaaact
     9601 gaagagattt taaaaatcat tccagctata aaaaagcgca aaattccact tatagtaatg
     9661 tgtggtaaaa aaaattctac ccttgtaaag caaggcgata tatttttaaa tatagctgtg
     9721 gaaaaggaag cttgtccttt gcagcttgct cctatgtctt caacaacggc aactttagtt
     9781 atgggagatg ctttagcagc tgctttgatg aaagcaagaa atttcaagcc tgatgatttt
     9841 gcactttttc acccaggggg aagtttggga cgtaagcttt taactaaagt aaaagatctt
     9901 atggtttcaa gcaatcttcc tatagtgcat cctgatactg aatttaatga tcttgttgat
     9961 gtgatgacta gtggaaagct agggctttgt gtggtgcttg aaaatgaaaa attggttggt
    10021 atcatcactg atggagattt gcgtcgtgct ttaaaggcaa gcgataagcc aagatttgat
    10081 tttaaagcta aagaaatcat gagcactaat cctaaagtag tcgatgctga tgctatggca
    10141 agtgaagcag aagaaatcat gctaaaatat aaaattaaag aaattatagt agggaaagaa
    10201 gaaaaagttg taggtattat ccagctttat gctataggaa atgtttaatg gctcttttat
    10261 ctgttattat cccttttggt ttaagtaaag aacgtcccta tatagaagaa agggttcttc
    10321 agaaagctaa atcttttcaa agtgatgaga atatagaatt tatttttgtt gaaggatatt
    10381 catctaaaaa tcacgagctt aaaaatttta tccaaacaaa tcatcatatt tatcttaaag
    10441 atatgaatca aaaagctttt tctcaaggaa gatgtaggaa tttaggagca agttatgcgc
    10501 attcaaatgt tcttttattt ttggatgtgg attgttatat ttctttagat aattttgaaa
    10561 aaattttaaa actagttcaa attaaaaata tttctcaaaa tatcaatgct ttggtagttt
    10621 tacccgtagt gtatcttaat aaagatgcta atgaaaaatt aaaacaatac gatgagaaat
    10681 tttgggatat tttgatacaa gaggatttat ttacagcaaa aaatacttgg gtaaaatttt
    10741 ttgccccaag ttctacttca agtattgtga taaataaaca tcagttttta agattaggtg
    10801 gaaatgatga aaattttatt gggcatggtt atgaagattt tgatcttttt gctagaattt
    10861 taaaagcttg tgtgagtttt gaaaaaatgc ctactaattt aagctatgat gctagaaatt
    10921 ggaatttttt taactttaaa ggttttagat cttggttttc attgcttggt catgaggctt
    10981 gtttttatgg aatttatatg tatcattttt atcatgtaga acccaatcaa aatgcttata
    11041 tgcaaaataa agataagaat catcagcttt tttataagca tttaaaaaat atcaaaaaac
    11101 atgatttaaa gcctttgcaa gtttttaaag ccaaaggtga aaaagtttta atgcttttta
    11161 aagaccaaaa ttatgatttt aaggatatta gtgtttatgt gggagaaacc atttataa
//
LOCUS       DAEBKH010000044        11092 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.044, whole genome shotgun sequence.
ACCESSION   DAEBKH010000044 DAEBKH010000000
VERSION     DAEBKH010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11092)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11092)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11092
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.044"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..622
                     /gene="pglA"
                     /locus_tag="KIL20_000807"
     CDS             <1..622
                     /gene="pglA"
                     /locus_tag="KIL20_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HBD2720847.1"
                     /translation="IKSVGINLKKFFPIYIESEKKELFWRNLNIDKKPIVLMIARALW
                     HKGVKEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGVVHYLGARSDIVELLQN
                     CDIFVLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSE
                     KISLLLEDEKLRLNLAKNAAQDALQYDENNIAQRYLKLYDRVIKNV"
     gene            615..1217
                     /gene="pglC"
                     /locus_tag="KIL20_000808"
     CDS             615..1217
                     /gene="pglC"
                     /locus_tag="KIL20_000808"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HBD2720848.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLSLYNEEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            1204..1794
                     /gene="pglD"
                     /locus_tag="KIL20_000809"
     CDS             1204..1794
                     /gene="pglD"
                     /locus_tag="KIL20_000809"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HBD2720849.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFEN
                     TLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSASVEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKSQNEKGVFVGVPAKRKI"
     gene            1892..3052
                     /gene="pglE"
                     /locus_tag="KIL20_000810"
     CDS             1892..3052
                     /gene="pglE"
                     /locus_tag="KIL20_000810"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HBD2720850.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKDY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKKCEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEYFSFLDELENS
                     RSNRWLSTALIDFDKNELNACQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHTQEVFKGTKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA"
     gene            3054..4826
                     /gene="pglF"
                     /locus_tag="KIL20_000811"
     CDS             3054..4826
                     /gene="pglF"
                     /locus_tag="KIL20_000811"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HBD2720851.1"
                     /translation="MIFYKSKRLAFFLTSDIVLILLSVYLAFSLRFSGDIPSIFYHGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSKMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFVVEEKEKIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     SLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGKPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGI"
     gene            4826..5719
                     /locus_tag="KIL20_000812"
     CDS             4826..5719
                     /locus_tag="KIL20_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HBD2720852.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLKRCVL
                     SDPYPSVLNNELCVTASIPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     LVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            5832..6224
                     /locus_tag="KIL20_000813"
     CDS             5832..6224
                     /locus_tag="KIL20_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HBD2720853.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            6247..7092
                     /locus_tag="KIL20_000814"
     CDS             6247..7092
                     /locus_tag="KIL20_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HBD2720854.1"
                     /translation="MQKKYYELFFIVEERYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEELSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNFINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            7096..9033
                     /gene="ftsH"
                     /locus_tag="KIL20_000815"
     CDS             7096..9033
                     /gene="ftsH"
                     /locus_tag="KIL20_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HBD2720855.1"
                     /translation="MNNNTPNNKGNPQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NSLPTRLQELEEVKTEVKVEE"
     gene            9030..9647
                     /locus_tag="KIL20_000816"
     CDS             9030..9647
                     /locus_tag="KIL20_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HBD2720856.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            9657..10385
                     /gene="pssA"
                     /locus_tag="KIL20_000817"
     CDS             9657..10385
                     /gene="pssA"
                     /locus_tag="KIL20_000817"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HBD2720857.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKIRNQE"
     gene            complement(10376..>11092)
                     /locus_tag="KIL20_000818"
     CDS             complement(10376..>11092)
                     /locus_tag="KIL20_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HBD2720858.1"
                     /translation="FYEDFKSHKFIFNHEHQSIFKKNTSQQITLLHPTRIRRPKFVNS
                     THALAKIIHSVAHIEFNAINLALDASYRFKNLPLQFYYDWLEVADEEIKHFKLLNSAL
                     EELGYKYGDFPVHDNLESALEATKDSLSFRMGIVHRGLEAKGLDANPFVVQKLQSSNH
                     FIKNLLMEYLEIILNDEIKHVKKGDTWWKFANQNKYDFIELCKTFKQFSLAGKKLNIQ
                     ARIKAGFTQEECEVIEKFYS"
BASE COUNT         3792 a         1263 c         2176 g         3861 t
ORIGIN      
        1 gataaaatcc gtagggatca atttaaaaaa attttttcct atttatatag aatcggaaaa
       61 aaaagagctt ttttggagaa atttaaatat agataaaaaa cctattgttc ttatgatagc
      121 aagagcttta tggcataaag gtgtaaaaga attttatgaa agtgctacta tgctaaaaga
      181 caaagcaaat tttgttttag ttggtggaag agatgaaaat ccttcttgtg cgagtttgga
      241 gtttttaaac tcgggtgtgg tgcattattt gggtgctaga agtgatatag tcgagctttt
      301 gcaaaattgt gatatttttg ttttaccaag ctataaagaa ggctttcctg taagtgtttt
      361 ggaggcaaaa gcttgtggca aggctatagt ggtgagtgat tgtgaaggtt gtgtagaggc
      421 tatttctaat gcttatgatg gactttgggc aaaaacaaaa aatgctaagg atttaagcga
      481 aaaaatttca cttttattag aagatgaaaa attaagatta aatttagcta aaaatgctgc
      541 ccaagatgct ttacaatacg atgaaaataa tatcgcacag cgttatttaa aactttatga
      601 tagggtaatt aagaatgtat gaaaaagttt ttaaaagaat ttttgatttt attttagctt
      661 tagtgctttt agtacttttt tctccggtga ttttaatcac tgctttactt ttaaaaatca
      721 ctcaaggaag tgtgattttc actcaaaatc gccctgggtt agatgaaaaa atttttaaaa
      781 tttataaatt taaaaccatg agcgatgaaa gagatgagaa gggtgagtta ttaagcgatg
      841 aattgcgttt gaaagccttt ggaaaaattg ttagaagctt aagtttggat gagcttttgc
      901 aactttttaa tgttttaaaa ggggatatga gttttgtggg gcctagacct cttttggttg
      961 agtatttatc cctttataat gaagagcaaa aattgcgcca taaggtgcgt ccaggtataa
     1021 caggatgggc gcaggtaaat ggcagaaatg ctatttcttg gcagaaaaaa ttcgaacttg
     1081 atgtgtatta tgtgaaaaat atttcttttt tacttgattt aaaaatcatg tttttaacag
     1141 ctttaaaggt tttaaaacga agcggggtaa gcaaagaagg ccatgttaca acagagaaat
     1201 ttaatggcaa gaactgaaaa aatttatatt tatggtgcta gtggtcatgg gcttgtttgt
     1261 gaagatgtgg ctaaaaatat gggctataaa gaatgtattt ttttagatga ttttaaagga
     1321 atgaaatttg aaaacacctt gcctaaatat gattttttta tagctatagg aaacaatgaa
     1381 attcgaaaaa agatttatca aaaaatttca gaaaatggct ttaaaatagt taatcttatt
     1441 cataaaagtg cacttataag tcctagtgca agcgtggaag aaaatgcagg gattttaatt
     1501 atgccctatg tagtgattaa cgctaaagcc aaaatagaaa aaggcgtgat tttaaatact
     1561 tcaagtgtga ttgagcatga atgcgtgata ggggaatttt ctcatgtaag cgtaggggct
     1621 aaatgtgcgg gtaatgtaaa aatcggtaaa aattgttttt tagggattaa ttcttgtgtt
     1681 ttgcctaatt taagcttagc agatgatagt attttgggtg gtggagcaac tttggttaaa
     1741 agccaaaatg aaaaaggtgt ttttgtggga gtgcctgcaa aaagaaaaat atgaaatgat
     1801 tataaaaaga tttttgtttg attctttgta aattttttta ggtaaaatag agttaattta
     1861 taaaaatttt gttttataca aaggataaat catgagattt tttctttctc ctccgcatat
     1921 gggcggtaat gaattaaaat atatagaaga agttttcaaa agcaattata tagcaccttt
     1981 gggtgaattt gtaaatcgct ttgagcaaag tgtaaaagat tatagcaaaa gtgaaaatgc
     2041 cttagcttta aattcagcta cagcagcttt gcatttagct ttaagggtgg caggggtaaa
     2101 acaagatgat attgttttgg cttcttcttt tacttttatc gcttcagtgg cgcctatttg
     2161 ttatcttaaa gcaaaacctg tatttataga ttgtgatgaa acttataata tcgatgtaga
     2221 tttgttaaaa cttgctatta agaaatgtga aaaaaaacca aaagcattga ttttaactca
     2281 tctttatggc aatgcggcta aaatggatga aattgttgaa atttgcaagg aaaatgaaat
     2341 tgttttaatc gaagatgctg ctgaagcttt aggaagtttt tataagaata aagccttagg
     2401 aacttttgga gaatttggag cttattctta taatggcaat aaaattatca ccacttcagg
     2461 tggaggtatg cttataggaa aaaataaaga aaagattgaa aaagcaagat tttatagcac
     2521 tcaagctagg gaaaattgtt tgcattatga acatttagac tatggttata attaccgttt
     2581 aagcaatgtt ttaggagcta ttggtgtagc acaaatggag gttttagaac aaagagtgct
     2641 taaaaaaaga gaaatttatg agtggtataa agaattttta ggagagtatt ttagcttttt
     2701 agatgaatta gaaaattcaa gaagtaatcg ctggttaagt acagctttga ttgattttga
     2761 taaaaatgaa cttaatgctt gtcaaaaaga tataaatatc agtcaaaaaa atattacttt
     2821 gcatccaaaa atttcaaaac tcatagaaga tttgaaaaat gaacaaatag aaacaagacc
     2881 attatggaaa gctatgcaca ctcaagaagt atttaaagga actaaggctt atcttaatgg
     2941 caatagtgag ttatttttcc aaaaaggaat ttgtttgcca agtggtacgg cgatgagcaa
     3001 agatgatgtt tatgaaattt caaaactgat cttaaagagc ataaaggctt aaaatgattt
     3061 tttataaaag caaaagatta gcattttttt taacttcaga tattgtttta attttactta
     3121 gtgtttatct ggctttttct ttgagattta gtggagatat tccgagtatt ttttatcatg
     3181 gcatgatggt ttctgctatt attttgcttg ttttaaaact ttcatttttg tttgttttta
     3241 gaatttataa agtagcttgg agattttttt ccctcaatga agcaagaaaa atttttatcg
     3301 ctttgctttt agctgagttt tgtttttttc ttatttttta tttttttagt gattttttta
     3361 atccttttcc aagaagtgct attgtgatag attttgttct ttcttatatg tttataggta
     3421 ctttaagaat tagcaaaaga atgcttgtgg attttaaacc ttctaaaatg aaagaagaag
     3481 aaactccttg tattgtagta ggggcaactt ctaaggcttt acatttgtta aaaggcgcaa
     3541 aagaaggttc tttagggctt tttcctgtgg gcgtagttga tgcgagaaaa gagcttatag
     3601 ggacttattg tgataaattt gttgtagaag aaaaagaaaa aataaaatct tatgtagaac
     3661 aaggggtaaa aactgccatt attgctttaa gacttgaaca agaagagctt aaaaaacttt
     3721 ttgaagaact tgtagcttat ggtatttgtg atgtaaaaat attttctttt acaagaaatg
     3781 aagcaagaga tattagtata gaagacttgc ttgctagaaa accaaaagat ttagacgata
     3841 gtgctgtggc ggctttttta aaagacaagg tagttttggt aagtggagca ggtggaacta
     3901 taggcagtga actttgtaag caatgtatta aatttggtgc taagcatctt attatggttg
     3961 atcatagtga gtataatctt tataagatca atgatgattt aaatttatat aaagaaaaaa
     4021 ttactcctat tttgttaagt attttagata agcaaagttt agatgaggta ttaaaaactt
     4081 ataaacctga gcttatttta catgcagccg cttataaaca tgtgcctctt tgcgaacaaa
     4141 atccacattc agcagtaatc aataatattt taggaaccaa aattttatgc gacagtgcta
     4201 aagaaaataa agtagctaaa tttgtgatga taagtacaga taaagcagta cgaccaacaa
     4261 atattatggg ttgcactaag agagtttgtg agctttatac tttaagtatg agtgatgaaa
     4321 attttgaagt tgcttgtgtg cgttttggta atgttttagg ttctagtggt agtgtgatac
     4381 cgaaatttaa agcacaaatt gccaataatg agcctttaac tttaacacac cctgatatag
     4441 tgcgttattt tatgcttgtg gctgaggcag tgcaacttgt tttgcaagct ggagctatcg
     4501 caaaaggggg agaacttttt gttttggata tgggtaagcc tgtgaaaatc atagatttag
     4561 ctaaaaaaat gcttttactt tctaatcgca atgatttaga aattaaaatc acaggtttaa
     4621 gaaaaggtga gaagctttat gaagagcttt tgattgatga aaatgatgct aaaacccaat
     4681 atgagagtat ttttgtagca aagaatgaga aggttgatct tgattggctt aataaagaga
     4741 tagaaaattt acaaatatgt gaagatattt cagaggcttt attaaagatt gtacctgaat
     4801 ttaaacacaa taaagaaggc atataatgta tataaaagat atacaaagat ttgaagataa
     4861 tcgctatcgt gctagagctt atatgagtta tattttaaca agaaatctac ccaataaact
     4921 tcctgatatt caccttgaaa cgattaaaac agctttggat aaaatagctc atgaagttgt
     4981 tgtttttgat gctttgtata ttttagatat ttcaggcatg caaatagaaa atgcgatttc
     5041 cttaaataag gctcatgaaa tagggcaggg tgaggataga agtactcgtt cttattttta
     5101 tagagctgta aaattaaaac gatgtgtttt gagcgatcct tatccttcgg ttttaaacaa
     5161 tgaactttgc gtaacagctt ctataccaat ttacgatgat aaaaataact tgctttttgt
     5221 tgtttgtatt gatatcaagc ttgaagatat tttaaagatt attcaagcag gaaaatttga
     5281 gtttgttttt actcaattta gtcgtttggt gtatttttgt ttcgcactgg ttttatttgt
     5341 gattacttgt tttttatttc aaaaaggttt ttttagtctt tttgataatc aagctatagg
     5401 catagaacat atgtttgaaa gtaccattgc cataacttta gctttagcta tttttgattt
     5461 ggcaaaaact ttgatcgaac aagaagtatt aggaaggaca aaaaaagaag aaggtggaat
     5521 tcaaaaaacc atggtgagat ttttgggttc tattatcatt gctttagcta tagaagcttt
     5581 gatgttggta tttaaacttg ctattggtga tctttctcag atgatttatg cgatttatct
     5641 tatcggtgga gtgagcttgc ttcttttagg tttaagtgta tatttattta cggttaagta
     5701 taaaaataat aatatttgag taaaaattta agtaaaagat gatataatgc tgttttttaa
     5761 aattttttag cttgattaat aaggctaaaa agggtaaaat aaaactataa aaactttgaa
     5821 aggacgaaat tgtgaaattg ttagttgttg atgacagttc tactatgaga aggattatta
     5881 aaaataccct aacaagactt ggacacgatg atgttttaga agctgagcat ggcgttgaag
     5941 cttgggattt attaactaaa aatgaagatg taaaagtttt aattacagat tggaatatgc
     6001 cagaaatgaa tggcttggag ttggtaaaaa aagtaagagc agagaaaaaa tatgaagata
     6061 tgcctattat catggttaca actgagggcg gaaaagctga agtgattact gctttaaaag
     6121 ctggcgtaaa taactatatt gtaaaacctt ttactccaca agttttaaag gaaaaacttg
     6181 aagatgtttt aggaacagga agtggagaag gtgcagctga gtaaaggctg atttttaaaa
     6241 ttctaaatgc aaaaaaaata ttacgaattg ttctttatcg tagaagagcg gtataaaaat
     6301 ttatttcttg attttgcttt tgatttaggt atagaagcca tagaagagaa agataatggt
     6361 gtttacatta gatcccatga gagtttggaa gagctttcat gggcacttga aatatttgct
     6421 caaaaactta caactacttt caatttaaac cataaaatta tttctaattt aagtcttgta
     6481 gagaaagaaa acaaggactg gatacaagaa tataaaaaag gcataaaacc tattttagtg
     6541 gataatgttt acatccatac cacttggcaa gaagaaaaaa agaattttat aaatataaag
     6601 attaatccag ccttagcctt tggctcagga catcacgaaa gcacatattc ttgtgtaaaa
     6661 tttttacaaa aattttctaa aagtaaatta agagctttag atcttggttg tggtagtgga
     6721 attttgggta ttattatggc aaagtttggc tgcaatgttg aaatttgtga tactgatgag
     6781 ttggctattg atagttcttt agaaaatgca agattaaatg gtgttgattt tcacaaggct
     6841 tggtgtggat ctatagataa agcaaatggt ttatataatc taattgttgc aaatatcatt
     6901 gcagatgtga ttttaatttt agaaaaagat attaaaaacc atttagaaga taatgctata
     6961 cttattttgt caggaatttt agataaatat tcaacaagaa ttaaagaaaa atttcaagat
     7021 ttggaactca ttgatgaaat gcaaatcaat gagtggtgta gttttgtata taaaaataat
     7081 aaaaaaggat aagtaatgaa taataatacc ccaaataata agggtaatcc gcagggtaat
     7141 aattttttta acaaaaatcc catttttatt tttgcgattt ttgcaattgt aatgataatt
     7201 atttttaagg gattttttga tggcaatggt tcttttggcg gggcattgaa tggcaatgaa
     7261 gtaaataaaa atgtccctta ttctgagtta aaaaagctta ttgaaagtgg acaaatcaat
     7321 caagttagca taggacaaac aacaatcaaa gcgatttcaa gctctcacaa tactgtttat
     7381 acagcaaaaa aagttaatga tcctgagctt gtgagtttac tagatagtaa aaatatcgct
     7441 tatggtgcgt attctgaaac aaattggttt acggatatac ttttttcatg ggttttgcca
     7501 gtatttattt tctttggtat ttggatgttt ttggcaagtc gtatgcaaaa aaatatggga
     7561 agttctatat tgggtatagg aagttctaag aagcttgtaa attcagaaaa acctaaagta
     7621 aaatttagcg atgtagctgg tgttgaagaa gctaaagaag aagtaaaaga aattgtagat
     7681 tttttaaagt atcctgaaag atatattaaa ttgggagcta aaattccaaa agggctttta
     7741 cttgttggac ctccaggtac aggaaaaact ttgcttgcaa aagcagttgc aggtgaagct
     7801 gatgtgccgt tttttagtgt ttcaggttca tcttttatag aaatgtttgt gggtgtaggt
     7861 gcttctcgtg tgagagattt gtttgaaaat gcaaaaaaag aagctcctgc tattgttttt
     7921 atagatgaaa tagatgctat tggtaaaagt cgtgcagcaa gtggcatgat gggtggaaac
     7981 gatgaaagag agcaaacttt aaatcagctt ttggctgaaa tggatggctt tgggacagaa
     8041 agttccccag tcattgtttt agcagcaaca aatcgcccag aagttttaga tgcagcgctt
     8101 ttaagaccag gaaggtttga tagacaagtt ttagttgata aacctgattt taaaggtagg
     8161 tgtgatattt taaaagtgca catgaaagat gtcaaaatat ccccaaaagt taaagtagaa
     8221 gatatagcac gcttaactgc agggcttgca ggagctgatc ttgcaaatat tattaatgaa
     8281 gcagcgcttt tagcgggtag ggattctaaa aaatatgtag aacaaaatga tttagttgaa
     8341 gctgtcgaaa gagctatagc aggacttgag aagaaatcac gtcgtattaa tgaaaaagaa
     8401 aagaaaattg ttacttatca tgaatgtggt catgccttga ttgctgaaac aaccaaaggc
     8461 gcaaaacgtg taagtaaggt ttctgtgatt ccgcgtggtc ttgcggcttt aggttatact
     8521 ttaaatactc ctgaggaaaa taaattttta atgcaaaaac atgaacttat cgctgaagta
     8581 gatgtacttt tgggtggtcg tgcagctgaa gaagtgttta taggtgaaat ttcaacgggt
     8641 gcaagtaatg atttagaaag agcaaccgat atcataaaag ctatgatttc tatgtatggt
     8701 atgagtgaaa ttgcaggact tatggtgctt gaaaaacaaa gaaatacttt cttaagtggt
     8761 gggcaaacta taaaagacta ttctgaaaag atggcagaat ctttagatga ttatgtaaag
     8821 aaaaccttag atgaacgcta taaagatgtt aaagatactt taaatactta taagggagcg
     8881 attgagacta tggttgcagc cctttatgaa gaagaaacta ttgaaggtaa taaagtgcgt
     8941 gagattatta aagagtttga ggatcaaaat agtctaccaa ctcgtttaca agaactcgaa
     9001 gaagttaaaa ctgaagttaa agtagaagaa tgaaagattt tattgcaaaa gatggatatt
     9061 taagtcttat tattttaagc ttaattttta tttttgtgtg gattttttat tctttttcca
     9121 tcttgctatt agcattaatt gtaatttgta tttttctttt tagagcgccc aaaagagaac
     9181 ttgtttgtag tgatgaaaaa gctatttttg cacctatgga tggtagggtt actaaaatag
     9241 aaaatattca tcataaagat ttgggtgaat gtgttgaaat tactattaaa aacgctcttt
     9301 atgatgctgg gaattttaat acaccttttg caatgtctat aatagatatt cgtttacgac
     9361 atgggctttt tttgtgcagt gaattaaaat ctgcaaaaat gatgaatgaa agagctttta
     9421 ttttggcaaa agttaaagag aataaaacga tagccttgcg aatctatgca ggttcttttg
     9481 atagaaaatt aaagcttgat aatatttctc atgatttaaa agcaggagat agaatgggtt
     9541 ttttaatcaa tggctctata agtttacttt taccaaaaga tactagaatt catataggct
     9601 taaatgatga aattaaagca ggctcattgc taggctattt tgcgtaagga aaaataatga
     9661 ataacagacc gcaattaatt tatattttac ccaatctttt tacagctgct tcagcttttt
     9721 taggggttat ttctattata gcttcaatac atggaaatta ttatacagct ttgatttata
     9781 ttattttatc tttgatttgc gatgggcttg atggccgtgt tgcaagactt acaaattcta
     9841 cttcaaaatt tggagtagaa tttgattctt tagctgatct agtagctttt ggagttgctc
     9901 cagcggttct tttttatatg gctataggtt atgattttgg aaaacttgga tctttgatta
     9961 cggctttttt tgtggttttt ggagctattc gtttggcgag atttaatgtt accacaggca
    10021 cttatgaacc ttctgttttt ataggtcttc ctatacctac tgcagcagtt gtgagtgcta
    10081 tatggactta tgcgtttatt agttatgatt ttttaaagcc ttatggtgta gtttttttgg
    10141 tgcttcaagc aattttaggg cttttaatgg taagtaatat acgctatcct agctttaaaa
    10201 agcttgattt taatcgttct agtgttttaa aagttttgat tattttaatt ataatatttt
    10261 catttttata tctttatcct cttgaaagtt tagtaatttt agcaagcttg tatgtgcttt
    10321 atggaattat tcgggtttta tataccatta ttgtttcaaa atttaagata agaaatcaag
    10381 agtaaaattt ttcaatgact tcgcattctt cttgagtgaa gccagctttg attcttgctt
    10441 gaatgttaag tttttttcct gcaagagaga attgtttaaa cgttttacaa agctcgataa
    10501 aatcatactt gttttgattt gcaaatttcc accaagtatc tcctttttta acgtgtttta
    10561 tttcatcatt aagtataatt tcaagatatt ccattaaaag atttttaatg aaatgattgg
    10621 agctttgaag tttttgaaca acaaaggggt tggcatcaag ccctttagct tctaaacctc
    10681 tatgaactat tcccattcta aagcttaaag agtcttttgt agcttctaga gcagattcta
    10741 aattatcatg cactggaaaa tctccatatt tgtaaccaag ttcttcaagt gctgaattta
    10801 aaagtttgaa atgtttaatt tcctcatctg ccacctccag ccaatcgtaa taaaattgca
    10861 aaggtagatt tttaaagcga taactcgcat ctaaagccag gttaattgca ttaaattcta
    10921 tatgagcgac tgaatgaatt attttagcaa gcgcatgagt tgaattgaca aatttaggcc
    10981 ttcttatacg tgtaggatga agcaaggtaa tttgttgcga tgtatttttt ttgaaaatgc
    11041 tttgatgctc gtgattaaaa ataaatttgt ggcttttaaa gtcttcataa aa
//
LOCUS       DAEBKH010000045        10965 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.045, whole genome shotgun sequence.
ACCESSION   DAEBKH010000045 DAEBKH010000000
VERSION     DAEBKH010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10965)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10965)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10965
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.045"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..962)
                     /gene="selD"
                     /locus_tag="KIL20_000819"
     CDS             complement(<1..962)
                     /gene="selD"
                     /locus_tag="KIL20_000819"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(912..914),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HBD2720859.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDINILKELLEGANDKVQECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTAKVGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKSMMELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKELIPDLNEEKLLLCDPQTSGGLLISISEKESLECLKKLEDEN"
     gene            complement(972..1544)
                     /gene="yedF"
                     /locus_tag="KIL20_000820"
     CDS             complement(972..1544)
                     /gene="yedF"
                     /locus_tag="KIL20_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HBD2720860.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLSSLSLNPVVDENAQEFCIKVQKKNFNSSEVNIHDYNVLFLKTDKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFF
                     NKSKELKIGNIGNAYEILNELFGKAKIITL"
     gene            complement(1656..3758)
                     /gene="ccaA"
                     /locus_tag="KIL20_000821"
     CDS             complement(1656..3758)
                     /gene="ccaA"
                     /locus_tag="KIL20_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HBD2720861.1"
                     /translation="MFKSLNIGLKLIFSVATVVVIGLVILISLITKQVSQNITKNTED
                     ILASITKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDN
                     SAYSNFTYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIAN
                     LQVVQDILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAMPIFDRKNQVVGVIGMTLD
                     FSAIATYLLDPKSQKYNGELRILLNSDGLVAIHPNKNLVLKNLKDVNPNKGAQETYKA
                     MSEGKNGVFNYIAFDGDDSYAAINSFKVQDSSWTVLVTAPKYSVFEPLKKLQLIIIGA
                     SFIFIFVVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGA
                     MGRIINENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKNVL
                     NRMLDVLQSKIGSNMNEINRVFDSYKALDFSTEVLDAKGEVEITTNILGKEIKKMLVA
                     SSNFAKDLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVA
                     SQADDIKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKS
                     LSEIEANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITN
                     EVNQIAAAILEDVDKKRF"
     gene            complement(3871..4608)
                     /locus_tag="KIL20_000822"
     CDS             complement(3871..4608)
                     /locus_tag="KIL20_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HBD2720862.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNVNIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKAYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRALELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
     gene            complement(4601..5383)
                     /gene="fdhD"
                     /locus_tag="KIL20_000823"
     CDS             complement(4601..5383)
                     /gene="fdhD"
                     /locus_tag="KIL20_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HBD2720863.1"
                     /translation="MDPLFTTQILKYKGDDSFTCDDTLVREIKLEIFINDERVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDVKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKARLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            complement(5550..6482)
                     /locus_tag="KIL20_000824"
     CDS             complement(5550..6482)
                     /locus_tag="KIL20_000824"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HBD2720864.1"
                     /translation="MRKVFVTLLLSVASLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRML
                     PASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            complement(6479..7120)
                     /locus_tag="KIL20_000825"
     CDS             complement(6479..7120)
                     /locus_tag="KIL20_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HBD2720865.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            complement(7117..9921)
                     /locus_tag="KIL20_000826"
     CDS             complement(7117..9921)
                     /locus_tag="KIL20_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(9379..9381),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HBD2720866.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKMSNEQAY
                     YVRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANP
                     AVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIF
                     DEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTL
                     IWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENL
                     PGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDA
                     IDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIY
                     LLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTL
                     RDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGE
                     YYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPID
                     TGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARA
                     VVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPL
                     NLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGT
                     KIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPKGTKPYASGESANTVTNYGYD
                     IMCQIPETKGGLCRISKDGK"
     gene            complement(9921..10112)
                     /locus_tag="KIL20_000827"
     CDS             complement(9921..10112)
                     /locus_tag="KIL20_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HBD2720867.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWENYYIKAE"
     gene            complement(10087..10800)
                     /locus_tag="KIL20_000828"
     CDS             complement(10087..10800)
                     /locus_tag="KIL20_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HBD2720868.1"
                     /translation="MEALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIAMAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
BASE COUNT         3564 a         2156 c         1339 g         3906 t
ORIGIN      
        1 atattttcat cttctagttt ttttaaacat tctaaggatt ctttttcact tatagaaatt
       61 aaaagtcctc ctgaagtttg cggatcacaa agtaataatt tttcttcatt taaatcaggg
      121 ataagttctt ttataaattc taaattttta taagctccag caggaattaa acccatatta
      181 aaatactctt ttactccatc taaaaaagga agttcacttt caaaaatttc aaaagaaata
      241 tttttattta gcatttcttt taaatgtcct aaaagtccaa aacctgtgac atcactcatg
      301 gcacttggat gaaatttaag agcaatttga ctggctttat aatttaactc catcatactt
      361 ttaagcatta tatctaaatg tttttgattt aacatttgtg cctttaaagc cgtacttaaa
      421 attcctgttc ctaaaggctt ggttaaaata atacaatctc caactttagc cgtattatta
      481 gcaataaatt tactaggatg tacttttcct gtaacactaa gtccaaaaaa aagctcagtg
      541 ctttctatag tatggccacc cacaactaaa gcattgcatt cttgaacctt atcatttgca
      601 ccttctaaaa gctcttttaa gatatttata tcatgattac aagtatcaaa acctactata
      661 tttaaggcat taattacctc tgcacccata gcaaaaacat cgcttaaagc atttgctgca
      721 gcaatagcac caaaatgata agcactatct actataggag tgataaaatc aagcgtttgc
      781 accaaagcta aatcaggact gatttgatat acgcttgcat cttcattatt tccgatatca
      841 ctaagtaaag caggagtttt ttgcatgaaa tttaaaattg ttttaagacc acccgggctt
      901 aatttcgctg ctcaacctgc tgctttaaca aaatgggtta aattttgatt tttatattgc
      961 agtgtttttc cttatagagt aatgattttt gctttaccaa aaagctcgtt taaaatttca
     1021 taagcattgc ctatatttcc tattttaagt tctttgcttt tattgaaaaa ttccaaacaa
     1081 gctccgcaac ttatgatctc aatacctaaa ttttcaagtt ctttcatagc taaatgtgct
     1141 ttatgatttt catcaacatt gattaaaaca ctttcattta cgcaaagaat tttacttgga
     1201 gcatgatcta aattttttaa ggtacttaaa aatcctacaa gtaaattttg tcccaattca
     1261 ccctcaccca ctttgtcggt ttttaaaaat aaaacattat aatcgtgaat atttacttca
     1321 ctagaattaa aattcttttt ttgtactttg atgcaaaact cttgtgcatt ttcatctaca
     1381 acagggttta aacttaaaga gctaagaaat tttacaacat tattttttga aataatagaa
     1441 tttaaaacaa tttctaaaat ttcattttct tgaagttttt caagagcgtt ttttgtttca
     1501 actataggct gaggacaaga aagattgcga caatcaattt tcattatttt tccttgatat
     1561 tagctttgaa aaataatatt attttattac ttgttttgtg tttaaaaatt ttaaataata
     1621 tagaaaaaat ttaaaagctc aaaaatgagc tttttttaaa atcttttttt atccacatct
     1681 tcaagaattg ccgcagcaat ttgattgact tcatttgtta tattattggt aacatttgca
     1741 acttcgacat tttccttagt tacagtttca agttgtgcta tagcatcgtt aatctgtgtg
     1801 attcctgctg tttgttcttt tacagattct gctacttcat ttacgctttg aacaagtata
     1861 ttaatatttg cctcgatttc agataaggat tttcctgttc tttccgcaag ctgtcttacc
     1921 tcatctgcaa caactgcaaa accacgccca tgttctccag cacgtgcagc ttcaatagct
     1981 gcatttaaag caagaagatt cgtttgctca gcgatatctt taatcacatt gacaatattt
     2041 tttatatcat cagcttgcga agcaacctca actgtttttc cacttacatt ttgcatagaa
     2101 gaattaatct cctctacagc tgcagccgat tgttctaaag aactcgcttg tgcattagag
     2161 ccatcagcaa gtttttgcat agaatttttt aactcttctg actgattggc taaatcttta
     2221 gcaaaatttg aagaagctac aagcatcttt ttaatttctt tacctaaaat attagttgta
     2281 atctcaactt cgcctttagc atcaagtacc tctgtgctaa aatcaagcgc tttataacta
     2341 tcaaaaactc tattaatttc attcatatta gaaccaattt tactttgcaa aacatcaagc
     2401 attctattaa gaacattttt aagttctact aattgagggt ttataggatt tttagtaatt
     2461 cttgcagtta aattaccttt ttcgatttct ctagcagttt gcaccgattc atctacagca
     2521 ttttgatctt gttctaaaga tatttgaatc ttttcaatat tttcatttat gattctgccc
     2581 attgctccta gctcatcatt ggcacgaatt tcaatagcct taggttcaat tttttcatgg
     2641 tttaaaaaac ggaaaaatga ttctaaagaa ctaagaatca caggcaatct agatgcgaca
     2701 atttttctta cgcaataata aaccactcct aaaacaacaa aaataaaaat aaaagatgca
     2761 ccaataataa ttaattgtaa ttttttcaaa ggttcaaaaa ctgaatattt aggggcagtt
     2821 accaaaaccg tccaagaact atcttgcact ttaaaactat taatcgcagc ataagaatca
     2881 tcaccgtcaa aagctatata gttaaaaact ccattttttc cttcactcat agccttataa
     2941 gtctcttgtg cacctttatt aggattgaca tcttttaaat tttttaaaac caaattttta
     3001 ttaggatgaa ttgcaacaag accatctgaa ttcaaaagaa ttcttaattc tccattatat
     3061 ttttgactct tagggtctaa aagataagta gcaatagccg aaaaatccaa agtcataccg
     3121 ataacaccta caacttgatt ttttcgatca aaaataggca tagcaacatt tacagcatca
     3181 aaatcttgac cttctaaatt catcttgata ggacggccta tatatacttt attttcccca
     3241 tattttgctt tttttaatat atcttgcaca acttgcagat tagctatttc atcactagct
     3301 tgtattgctt ttattccgcc tttattatcc ttttcttcat cagcgtaaag catgacaaat
     3361 tttccacttt gagtattgaa aaatttactc tcttctttaa agtattctgg cggatcgata
     3421 agatacaaat aagtaaaatt agaataagca ctattatcaa aagtattggt tataatattt
     3481 gttatattat ctatatctaa atcttcttta gaggttgatc taaacatttc tgttaaagta
     3541 cctgaaatac ttttatttaa agcgatcatt tccccaaaaa ttccttgagt ttgggtagca
     3601 tattctttcg tgatagaagc aagaatatct tctgtatttt tagtaatatt ttgacttact
     3661 tgttttgtga ttaatgaaat taaaataaca agtccaataa caacaacagt tgccacagaa
     3721 aaaataagtt ttaaacctat atttaaagat ttaaacatct tataactcct aaaaaataaa
     3781 aaattcagat tctaatttta acatattttt aaaaaaataa tattaattaa ttataaaaat
     3841 attatgtatt agtatttttt gatagaagat ttattttttt ccttttaaaa acagttcttt
     3901 aaagcgttta ttagcgtatt cttctatatc tttttgtaaa atagagtaat tttccattaa
     3961 ttccaaagct ctaggagtaa gtttagttcc tgattcttta gagcgtcctt gtcttgtgct
     4021 aactaagatt tcttgagaat ttttttgtaa ggtttgtaaa tgcatccaag cttttttata
     4081 attaatcccc ataagtttag aagcatgcaa taaactacct gtttgtccga taagttctaa
     4141 aagttctgtt tttcctcgtc caaaaagcaa atctccatcc gcattttcaa tccaagtttt
     4201 tgttcttact ataaattgct tacctttttt ttctttaaaa caaccaagtt gacaatactt
     4261 tacatcaacc ttataagctt ttaaagctga acgcatactt ttaagcccac aaccttcttt
     4321 agcaatatct cttgcatctt tacaaaaaat tctacgcttt tcatctaaac taggttctat
     4381 ttttttaagt acttcaatct ttgctttttc aaaatctaaa tgtccaaatt gccccaactc
     4441 gcaattatca attctcatgt gattttcatc ggctaattgt ccgatttttt ctatatttac
     4501 attaaatttc tttgcaattt taaaagccgt accacaatct aatttttcat tactatttaa
     4561 caattctctc atatatgaga tgatttcttt ttcttgattt ttatccatga attctaaatt
     4621 ctccactata aatattaatc ttattttctc tagcaaaacc acaaagcgtt aaatcaaatt
     4681 ttcttgctat cataactcct aaacaagtag gagccgtgcg tgaaacaagt actggaattt
     4741 tatgcataac tgctttagct accatttcag aacttagcct tccactaacc attaaaaaac
     4801 attgacttaa atcaacccca gctaaacgtg cttttcctaa agctttatct atggtattat
     4861 gctgagctat atcttcacct ataaaaaaag ttttctcatc tacaaaaagc ttagccgtat
     4921 gtacacagcc tgttttctca taaagctcgc attgagtata aaaagtactc atttgtttta
     4981 aaatttcatc tttgctaaat tttacatcag aactaatttt actcgcttca atagcttctg
     5041 gatcgatatt ggcagtatgt gctctaccgc aaccacttat aactacacct tcagcattaa
     5101 gctttgctaa attttcttta tcaatctttg ctttaatatg cacactcata ccatcatctt
     5161 ttgtttctat gctctcaata tcgcttactt tcgcaatgat attttcgctc attaaatatc
     5221 ctattgctaa tgcctgttca tctacaggag ttgccattaa agcacctact ctttcatcat
     5281 taataaaaat ttcaagctta atttcacgca ctaaagtatc atcacatgta aaagaatcat
     5341 cacctttata ttttaaaatt tgagttgtaa ataacggatc cataccttat cctttaaata
     5401 tctttaaata atattatatc aaaaaaacat aaataacaaa tttatatatg gaaaaataga
     5461 ttttagattc aacttataaa ataaaattcg ttctatttat ttcaaaaaag cttaaaacta
     5521 ccgctatgca ataacatagc ggttaaagat taaattttta cattaggatc ataagaaaaa
     5581 ctaggttcaa tttgcttttt attgcttaat tctttatacc aataagaatg taaaatataa
     5641 acctcttctt cttctttata accactaatc atagaatgga tactgccttt gattgcaaat
     5701 actgccatat aaatatgcac accaaaaaac actgcacaca ctatacccaa gaaattatgc
     5761 actatagctg aaattcttaa aagttcaatt tgagttaaac caaaaagacc ttgaattgcc
     5821 gtggaattaa aatcaagaaa atacataaat ccacctgtaa ttatcatcaa aaatccacca
     5881 aatacagcta tataatacca agatttttga ccaaaattaa acttacctgc aggtacagga
     5941 cgttttactt tgcttaaata accacctact atcatcatcc atctgatatc ataacttgca
     6001 ggaagcattc ttttaatcca ccataaaaac atagggatta tagagatgat aaataaaacc
     6061 gttgcaaaag catgtaaatt tttacaaacc cttacaaaaa gtccgcctcc aaaagtcgcc
     6121 ccaaacatca tcacaaaacc agttggcact aaaatcaccc aagaaattgc cgcgataaaa
     6181 tgaaaaagtc tttcaaataa tgtaaaagca taaattttct ttccatcgtg tgaaaattgc
     6241 ttaggtccta taaccatata atgcaaagca aatgcagata ataccgcaat aacagcaatt
     6301 aaagctatag tagctatata ttcaccttgt aaagttgtcc aaagtttgcc aaaagtatca
     6361 taatttggga tatttgtaat acgatgaaaa tcccaaattt gagtatcttg tcccattctc
     6421 tcgctaccat aagcaaataa actcgctacg cttaataaaa gcgttacaaa tacttttctc
     6481 ataagcgttc ctttcctgtg taagcaatct tccactccaa actttccgaa ggatttggaa
     6541 tgccataatt tctattcata agtctattat gataaatctc ttctatttta gaactttcac
     6601 ctactaaaag tgcttttgtc gaacacatcg cagcgcatac aggaactttt ccttctgcga
     6661 tacgattttg cccataaagt tctctttctt tttctgaatt cgttgcttca gggccacctg
     6721 cacacatagt acatttatcc ataatgcctt tatttccaaa aacactatct tttggaaatt
     6781 gtggtgcacc aaaaggacaa gcataaagac aatatccaca acctatgcaa atttctttat
     6841 catgcaaaac aataccatca gcacggatgt aaaaacaatc cacaggacaa acgatagaac
     6901 aaggagcatc atcacaatgc atacaagaaa tagaagttga aacttctttt ccttgaattc
     6961 cttcatttaa agtaatcaca cggcgacggc gaatatgaat aggaagctca tgtgcttcat
     7021 cacaagctac cgcacaacca ttacaatcaa tacaacgctc attatcacaa aagaatttca
     7081 agcgttcttt ttctaaattt gcaaaattta ccttactcat tttccatcct tactgattct
     7141 acaaagccca cctttagtct ctggaatctg acacatgata tcataaccat aatttgttac
     7201 cgtattagca ctttctccac ttgcataagg ttttgttcct ttagggaaat tgtgcgttaa
     7261 atccacgcct tgcataactc ctgtaaaatg gaaaggcaag aaaatcatat cttttgctac
     7321 acctggatta accttcactc ttacatgaat tttagtacct tctggagaat gtacccaaat
     7381 catatctcct gctttaatgt cttgctcttt tgctaattca ggattgatct cacaaaacat
     7441 ttcaggtgtt aaacgcgtta gatacataga tgctctattt tccatacctg caccatttaa
     7501 attcacaagt cttgcagtaa caagattaag cgggaattct ttagaataat ccttagcttg
     7561 ttgcacagac acaaatttag tatccacgcg gtaaagcgct ttttgatctt caaaacttgg
     7621 atatttttgc accaaatcgt ttcttggaga atgtaaaggc tcacggtgga gtggaatttt
     7681 atctttaaaa gtccaaacta cagctctagc tttagcattt ccataaggaa ctatgccttt
     7741 ttctatacat ttagttgcta tgatattgct atcatcataa gaccaagttg atcccatttt
     7801 ttctttttct tgggcactta aagtaatacc taaaactttt tctatattat ctttagtaat
     7861 ttgtggataa cctgtatcaa taggtgaatt taaaggcgca tttttagcaa gtaaactctc
     7921 tccttcatac tcaagtccaa aattatttct aaagcccata ccaccttttg cgacttcaat
     7981 gtcggtatta taaagtacag gagaacctgg gtgcttatca ctccaacaag gccaaggaag
     8041 cccgtaatac tcaccagcaa cttcatcttt tccttctaaa gttacctcat caaatttatc
     8101 ccagtataaa gtatgctttt taagcctttc aggactccaa ccattaagcc ctatacttct
     8161 aactgctttt gcaatttctc ttgttgcatt ttcaggccaa acaatctcac ctttttcatc
     8221 gcgtaaagtc ttggtaaagt cttcataaaa acctaatttt ttagcaagct caaataaaat
     8281 ttcttgatct tccatgcttt cataaagtgg atctacaact ttaaatctcc attgtccgct
     8341 acgatttgtt gctgttacac ttccgcttgt ttcaaactgt gttgctgcag gtaaaagata
     8401 aattccatct tttctttctg caataatgcc tgcttcattt acaaaaggat cggctaaaac
     8461 taaaagctct aaagcttcca aaccttcttt aacttttact tgttgtgcag tcgaagtgat
     8521 accatttccc ataactacta aagcttttaa aggcgttcct gcgttatcga tagcatcatt
     8581 tccatctttt ccatttaaag ccgctgccca ccatctagca agtgaaagtc cggttttatg
     8641 catccaatct ttgcttacaa aatttcctaa aagccactca taatccacac cccaaatttt
     8701 ggcatagtat ctccaagtcg cttcatttaa aggataataa cctggtaaat tttcgctcaa
     8761 acaagccata tctgaagcac cttgaacatt atcatgtccg cgtaagatat taactccacc
     8821 accaaattta cctatatttc caagtaccat ttgcacaata ggtgctaaac gtgtatttga
     8881 agttcctaca gtgtgttgag ttaaacccat agcccaaata agcgtagttg gtttgttttt
     8941 agctacttcg tgagtgattt gcaccaaaag ttctttagaa attcctgtaa cattttccac
     9001 ctcttcagct gtccattttg ccgcttcttc acgaatttta tcgattccaa aaactctttc
     9061 atcaagatat tttgtatctt ctaaaccttc atcaaagatg atttttagca ttccatacat
     9121 gaaagcaatg tcagttcctg gacgaattct tgcataaata tccgcttttg ctgcactttt
     9181 tgtaaatcta ggatctacaa cgataagctt tgcacctttt tcttttgctt ttaagaaatg
     9241 tctaaaaccc acaggatgat ttaccgctgg atttgcccca atgataatga tacatttact
     9301 tctttgaatg tctccaagat ggtttgtcat agcgccataa ccaaatgtat tcgccacacc
     9361 ggcgactgtt gcgctgtgtc aaattctagc ttgatgatct acattgtttg ttccaaaaaa
     9421 cgctgcaaat ttacgtacat aataagcttg ttcattgctc atttttgcag aacctaaaaa
     9481 cataacactt tcaggatttt ctttacgata agcagctagt ttttctccga tctcacttaa
     9541 agcttgctca taacttatgc gtttccattc tccattttct tttttcatag gatattttaa
     9601 acgcacatgt gaacgcacca tatcgatcat atcagatccc ttgcagcaat gtccacctga
     9661 actcacagga tgatcttgag cgatttcttg acgcacccaa acaccatttt gcacttctgc
     9721 aataatccca cagcctacag aacaggctgt acaaactgtt tttacttttt tactaccttc
     9781 ataagcttct ttaagctcat cagcactcgc ttctcttaaa gtttcacttc tagcaagcaa
     9841 cggtgttgct agacttgaaa gtgctgccat tttaagaaaa gaacgacgcg taagcttgat
     9901 attttcacct acacttgaca ttactcagcc tttatataat aattttccca attagcactt
     9961 ctttgaaaaa gcacttcttt tttcttgctt ttacctttaa ccaaatcttt tctttcttca
    10021 tctttagcta gagctaaagt tgtgctacca agcactccag cagcccctaa ggcaaaagcg
    10081 gattttttaa gaaattccct gcgatttttc acgagtcctc ctttgtttat ttgcttctct
    10141 tcttaaaaat tccgaacgcg atagatcatt ttgcactttt ttagaattta tttttgcagg
    10201 tttttccact tcaaagcaaa gtctttcaaa ttccataaaa gccatcgcaa tacttgcaat
    10261 ttccttatat aaattcgcat ttttattcat gaaaacatcg cctaaaaact catcaatgct
    10321 tttattgatc actttttcaa aaagctcttt agctaaatca tcttcatttt gccttaaaaa
    10381 ttcactcatc aacaataaac aaaatccaac actatcttca ctttctttaa aaaatttttc
    10441 attgcgtctt attttacttt tgactaaaat ttgacgcacg caaagtaaag gatttgaatt
    10501 ttcaaaacct tcttctatgt aagaaaaagt cgttggaatg ctgtttttaa gacttaaaaa
    10561 aagcaaatcg tattctttaa aaaatgcttg tatagaattt tcatcatcta aatgcttaag
    10621 caagatatca aaatttgatt ttaaattttc atcaaataaa cattcttgca ttgtctttaa
    10681 atactcttgt aattttgaca atctttcttc agaaaatgaa aaaacaaaaa gctctcctag
    10741 acattgataa taaagacttc tagctaatct taatttttcc aaatccatta aagcctccat
    10801 gcattcaaaa ttttcaaaaa tagctttaaa ttttgcttga atgaatatta tgcaaaatat
    10861 acctaatatt cattttaaag ccgattttta aatcgattta tcttaatact atttgattta
    10921 aaaatcactg aatttcaata aaattccaca aggatttaaa atctt
//
LOCUS       DAEBKH010000046        10731 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.046, whole genome shotgun sequence.
ACCESSION   DAEBKH010000046 DAEBKH010000000
VERSION     DAEBKH010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10731)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10731)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10731
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.046"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..1478
                     /locus_tag="KIL20_000829"
     CDS             <1..1478
                     /locus_tag="KIL20_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HBD2720869.1"
                     /translation="IKESLFYQKFQALYESASSASFVYKNQEDYFEDTQMIFDYHNTL
                     LHSLKLDFIEFKKYFDEKCDFEYFEKLLALFLENEKQELVYLIRKELYFIKDLLKNQS
                     LTLKELIHLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSV
                     NELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSKSRFLDEL
                     DFDFFYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFALSFSRFNLLENQ
                     KRTYYYRYILNLAEPRVLSEESKAKNQGNFIHKMLEIYYKNYANNDFDIKVFANLLDK
                     EYQKYNISELDLEVFKLKFIQFAKNEKEHFSKGFYVAHTELELNNILKLGTDSIKLKG
                     TIDRIDSSKEGNLIIDYKSGKVPSNSYQLAFYQALYDENANVGFYDLNSMQILHQKAK
                     SLDELRERLKDLVLMSKEEIEFENEQDEHCPYKLIYKKELK"
     gene            1475..4240
                     /locus_tag="KIL20_000830"
     CDS             1475..4240
                     /locus_tag="KIL20_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HBD2720870.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDVKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNLPKIPNPSKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDSLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQKI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCTLKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIVKRSEESVNGNYPSYFKGGFLNIYSQERGFLE
                     SKEQILSVKKESIQALQKFEKISPQEVQSEEKLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQMLTQRCKSKFRHFLDESDFEKLFKRIEILLKNTQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLALKDEEAFIIDYKTGLAMQDKHKEQVRTYKIAISEILKKDKVRAFIVYCLEN
                     EIQILEI"
     gene            4324..4749
                     /gene="rplM"
                     /locus_tag="KIL20_000831"
     CDS             4324..4749
                     /gene="rplM"
                     /locus_tag="KIL20_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HBD2720871.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            4752..5141
                     /gene="rpsI"
                     /locus_tag="KIL20_000832"
     CDS             4752..5141
                     /gene="rpsI"
                     /locus_tag="KIL20_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HBD2720872.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            5266..6225
                     /gene="cadF"
                     /locus_tag="KIL20_000833"
     CDS             5266..6225
                     /gene="cadF"
                     /locus_tag="KIL20_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HBD2720873.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRPAPQTKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            6225..6866
                     /locus_tag="KIL20_000834"
     CDS             6225..6866
                     /locus_tag="KIL20_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HBD2720874.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLAYREIYAQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKRLNKTQENAY
                     MIGDTILDIQAAISANITPLALACGYGNENELKAYSMVFLNAYEAVNYIARLN"
     gene            6959..10519
                     /gene="nifJ"
                     /locus_tag="KIL20_000835"
     CDS             6959..10519
                     /gene="nifJ"
                     /locus_tag="KIL20_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HBD2720875.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPERVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIVDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            10543..>10731
                     /locus_tag="KIL20_000836"
     CDS             10543..>10731
                     /locus_tag="KIL20_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HBD2720876.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYK"
BASE COUNT         3891 a         1343 c         1985 g         3512 t
ORIGIN      
        1 gtattaaaga aagtttattt tatcaaaaat ttcaagcact ttatgaaagt gctagtagtg
       61 cttcttttgt ttataaaaat caagaggatt attttgaaga tacgcagatg atttttgatt
      121 atcacaatac gcttttacat tctttaaagc ttgattttat agagtttaaa aagtattttg
      181 atgagaaatg tgattttgaa tattttgaaa aattacttgc tttattttta gaaaatgaaa
      241 agcaagagct tgtttatttg atacgaaaag aactttattt tattaaagat ttattgaaaa
      301 atcagtcttt aactcttaaa gagttgatcc atcttttttt catgcaaatt tcacaacttt
      361 cccttagtga tgtaggcgga ggtaaggtta cggtaatggg acttttagaa agtcgtgggc
      421 tttgttttga tggggtaatt ttggttgatt ttaatgaaga atttattcct aaaagaagtg
      481 ttaatgaact ttttttaaac aatgaagtgc gtaaaaaagc aggattgatt agctatgata
      541 gaagagaaaa tttacaaaga ttttattatg aaagcttgat gaagaatgct ttagaagtaa
      601 gtatttgctt tgtggaaaat gaagaaaaaa gcaaatcacg ttttttagat gaacttgatt
      661 ttgacttttt ttatgaaact catatccatc aaaaagctta tcttaatgct ttaaaattag
      721 actatgaagg cataaaacct aatctaactc ctataaaagc tcctatttta aagcataatc
      781 ctttcgagtt tgcgctttct tttagtcgtt ttaatttatt ggaaaatcaa aaaagaactt
      841 attattatcg ttatatttta aatttagcag aacctagggt tttaagcgag gaaagcaaag
      901 cgaaaaatca aggaaatttc atccataaaa tgcttgaaat ttattataaa aattatgcaa
      961 ataatgattt tgatataaaa gtttttgcaa atttattgga taaagaatat caaaaataca
     1021 atattagcga acttgatctt gaagtattta aattaaaatt tatacaattt gctaaaaatg
     1081 aaaaagagca tttttcaaaa ggcttttatg ttgcacatac agagcttgag ttaaataata
     1141 ttttaaagct cggaacagat agtataaaac ttaagggcac tatagatcgt atcgatagtt
     1201 caaaagaagg caatttgatc attgattata aaagtggaaa agtaccaagt aattcttatc
     1261 aacttgcttt ttaccaagcc ttatatgatg aaaatgcaaa cgtgggtttt tatgatttaa
     1321 atagtatgca aatattgcat caaaaagcta aaagtttaga tgagctaaga gaaagactta
     1381 aagatttggt tcttatgagc aaggaagaaa tagagtttga aaatgaacaa gatgagcatt
     1441 gtccttataa actcatttat aaaaaggaat taaaatgagt caatttgagc cttttttggc
     1501 attagaagcg agtgcgggaa gcggaaaaac ctttgccttg agtgtgcgtt ttgtagcact
     1561 tattttaaaa ggagctagga ttaatgaaat tttagcttta acttttacta aaaaagctgc
     1621 taatgaaatg caaaaaagaa ttattgagac ttttttaaat ttagaaaaag aaaataaaac
     1681 cagtgaatgc aatgaacttt gcaagctttt aggtaaagat aaagaagagc ttatttcttt
     1741 aagagatgtt aaaaaagaag aatttttaag aacagagtta aaaatcagta cttttgatgc
     1801 ttttttcgga aaaattttgc gtgtttttgc tttaaatttg ggcttaagta gtgattttac
     1861 aatgagtgaa gagagacttg atgtaagaga gattttttta aaacttctta aaaaagatga
     1921 attaaaagat ttggcttatt atattaattt agttgatgag aaagaaaatt tttttaacga
     1981 gcttgaaaaa ttttatgaga atgcttattt tcaaaatctt cctaaaattc caaatccatc
     2041 taaagcttat atcaataaag cctatagtga gttaagaagt tattgtttgg gtcttactca
     2101 tgtaaaaaat tataaaaatt tgtgtgacaa tttcaaaagt gaagttttag atttatccgt
     2161 gtttatgcaa tcaagtttta tgacaaaatt tgaaagtaca aaatatttac aagatttaga
     2221 aagtactaac ttgcatttta gtgcaaaaag aatggagctt ataaatgctt taaataccta
     2281 tgccatagag cttgaaaatt ataaaattgc taatttaatg aatcttttaa atcattatag
     2341 tgaagctaaa aatatatttc ataaagataa aaatacctta aatttccaag atgtgagtaa
     2401 aaaagtttat gagttaataa ccagtgaatt taaggatatg atttattttc gtttagatgg
     2461 ttttatttcg catttgctta ttgatgaatt tcaagataca agcgtgatcc aatatcaaat
     2521 tttacgccct ttgatcgctg agcttgtttc aggagaaggg gttaagaaaa atcgcacttt
     2581 tttttatgta ggagataaaa aacaaagtat ttatcgcttt cgtaaaggaa aaaaagaatt
     2641 atttgatttg ttaaaacaag aatttagtca aattaaaagt gatagtttaa atactaatta
     2701 tcgttctaaa gagcttttgg ttgattttgt taatgaaact tttaaagaaa aaatcaaaga
     2761 ttataaagag caatttgcct tagaaagtaa aaaaggcggt tttgtgcgta ttgtggaatc
     2821 taaagaacaa aaggttaaaa accaagccca agaaatcaag gaaaagactt tagaaacttt
     2881 atttgagcaa attaattttt taagatctaa aaatatttct tatgatgata tttgtatttt
     2941 gtgttggaaa aatagcgatg cagatatggt tttggatttt ttaagagagc aaaaaattcc
     3001 tgcatttact caaagtaatg ttttacttga aaataaagca agcgtaaggc ttgttttaga
     3061 atatgctaaa tattgtattt ttggtgatga gttttacttg gtatttttaa aagaactttt
     3121 aggttttgag ccgagaaaaa tcacccttga tttttcaaaa aatgctatgg aaaatgtact
     3181 ttttttaata aaggaattaa aacttgattt aaatgatatc gctttaatac aatttatcga
     3241 atatgctaaa actaaggaga attttttaaa gcttttattt gagccttgta ctttgaaaat
     3301 agtaagcgaa caaaatatgg gaattagtat tatgagtgtg cataaatcta agggtttgga
     3361 atttgatcat gtgattttgc ttgatagttt atctaaaaac aattcaaaca atgaagatat
     3421 catgcttgaa tatgatatca atcaaggttg gcaactccat attaaggata aaattcgaga
     3481 gcttactaaa gagcctattt ataccctttt taaagaaaat attacaagag caaattatga
     3541 agatgatatc aataaacttt atgtggcttt tacaagagct aaggaaagtt tgataatcgt
     3601 aaaaagaagc gaagaaagtg taaatggaaa ttatccaagt tattttaagg ggggattttt
     3661 aaatatatat tctcaagaga gaggtttttt agaaagcaaa gagcaaattt taagtgttaa
     3721 aaaagaaagt attcaagctt tacaaaaatt tgaaaaaatt agcccacaag aagttcaaag
     3781 tgaagaaaag cttgatagta aagagctata ttttggaaat gcttttcact tttttatgca
     3841 aaatttaaaa cttcctaagg gtgaaaattt tcaaatgctt actcaaagat gcaagagcaa
     3901 atttagacat tttttggatg agagtgattt tgaaaagctt tttaaaagaa ttgaaatttt
     3961 acttaaaaat actcaatttc aaaatttgat tggtgatgga aagcttttaa aagaacaagc
     4021 tttgagtttt aatggagaaa ttaaacaatt agacttgctt gccttaaaag atgaagaagc
     4081 tttcataatt gattataaaa caggtcttgc tatgcaagat aaacataaag agcaagtaag
     4141 aacttataag atcgccatta gtgaaatttt gaaaaaagat aaagtgcgtg cttttatagt
     4201 ttattgtttg gaaaatgaaa ttcaaatttt ggaaatataa actttatttt tacttaaatt
     4261 aagtaaaaat taatattatt ttttatacaa tcacatttta aatttttggc aaaggtaaaa
     4321 attatgacaa agataacaaa gccaaacgaa gtaaaacgag aatggattgt tttagacgca
     4381 gaaggcaaac gctttggtcg tcttttaact gaagtagcaa caattttgag aggtaaaaac
     4441 aagccttgct ttactccaaa tgttgattgt ggtgattatg taattatcat caatgcttca
     4501 aaagctgtat ttacaggtgc taataaagca gaagataagc tttatcatag acattcagga
     4561 tattttggaa gtgtaaaaag cgaaaaattt ggtgatttac ttgaaaaaaa tcctgcaaaa
     4621 ttatataaat tagcagttag aggtatgctt cctaaaacaa atttgggcag agctatgctt
     4681 aaaaaattaa aaatctatgc gggtagtgag cacccacaca ctgcgcaaat tgctaaagaa
     4741 ggaaaataat catggcaaca acatacgcaa caggtaagag aaaaactgct atcgcaaagg
     4801 tatgggtaaa accaggtagt ggtaaaatta gtgttaatgg tgttgattta aacacttggc
     4861 ttggtggaca cgaggcgatt aagcttaaag tggttcaacc tttacttgtg actaaacaag
     4921 aaacttcaat ggatattaaa gcaactactt taggcggggg ctatagtgct caagctgaag
     4981 ctttaaggca tggaatttca agagctttag cagctatgga tgctgatttt agagccttat
     5041 taaaacctaa aggacttctt actagagata gtagaactgt tgagcgtaaa aaatatggac
     5101 gccgcaaagc aagaagaagt ccgcaattct ctaaacgtta atatttttgg tgggattttc
     5161 ccacctttct acaatttttt ataaaactca tccttttttc tgtcatttat gatataattg
     5221 caaaatttaa atttttattt tataacacaa tgaaaggttt tttctatgaa aaaaatattc
     5281 ttatgtttag gtttggcaag tgttttattc ggtgctgata acaatgtaaa atttgaaatc
     5341 actccaactt taaactataa ttactttgaa ggtaatttag atatggataa tcgttatgca
     5401 ccagggatta gacttggtta tcattttgac gatttttggc ttgatcaatt agaatttggg
     5461 ttagagcatt attctgatgt taaatataca aatacaaata aaactacaga tattacaaga
     5521 acttatttga gtgctattaa aggtattgat gtgggtgaga aattttattt ctatggttta
     5581 gcaggtggag gatatgaaga tttttcaaat gctgcttatg ataataaaag cggtggattt
     5641 ggacattatg gcgcgggtgt aaaattccgt cttagtgatt ctttggcttt aagacttgaa
     5701 actagagatc aaattaattt taatcatgca aaccataatt gggtttcaac tttaggtatt
     5761 agttttggtt ttggtggcaa aaaggaaaaa gctgtagaag aagttgctga tactcgtcca
     5821 gctccacaaa caaaatgtcc tgtagagcca agagaaggtg ctttgttaga tgaaaatggt
     5881 tgcgaaaaaa ctatttcttt ggaaggtcat tttggttttg ataaaactac tataaatcca
     5941 acttttcaag aaaaaatcaa agaaattgca aaagttttag atgaaaatga aagatatgat
     6001 actattcttg aaggacatac agataatatc ggttcaagag cttataatca aaagctttct
     6061 gaaagacgtg ctaaaagtgt tgctaatgaa cttgaaaaat atggtgtaga aaaaagtcgc
     6121 atcaaaacag taggttatgg tcaagataat cctcgctcaa gcaatgacac taaagaaggt
     6181 agagcggata atagaagagt ggatgctaaa tttattttaa gataatgaat aaaactattt
     6241 tatttgattt agatggcact ttaattgatt ctactgatgc tattttaaat tctttccaag
     6301 gagcttttaa agcccttgga ttaacttcta aaaataatga agaaatcaaa aatctcatag
     6361 gttatccttt agagcaaatg tttagaatgc tttatccaga taaagtaaat ttaagtaaag
     6421 aatttgtatt agcttatcgt gaaatttatg cacaaattta tttagaacaa actactcttt
     6481 tgcctaaagc aaaagaagca ttagaacttg gaagcgaaat tgcagatctt ggtatagtta
     6541 caacaaaagg aggtaaattt actccgattt tacttgatta tttgggagtt aaaaaattct
     6601 ttaaaacttt aattactctt gaagatgtca caaatccaaa gccaagttcc gaacctataa
     6661 ttttagcctt aaaaagactc aataaaactc aagaaaatgc ctatatgata ggcgatacaa
     6721 tactagatat tcaagctgca atttctgcta atatcactcc tttggcctta gcttgtggct
     6781 atggcaatga aaatgaatta aaagcctatt ctatggtatt tttaaatgca tatgaggctg
     6841 ttaattatat agctagatta aactaatttc aagttttcgt taaacgcctt ttaagagaat
     6901 ttatagtaaa ttgatagcta aaaaattata aaaattatca atataaagga aggtctcaat
     6961 gggtaaaatt atgaaaacta tggacggaaa tgaggctgct gcatacgctg cgtatgcttt
     7021 tactgaagtt gctggaattt atcctattac acctagttct cctatggctg attacaccga
     7081 tatgtgggca gctgcaggca aaaaaaatct ttttggagtt cctgtaaaaa tcgtagaaat
     7141 gcaaagtgaa gcaggagctg caggtagtgt gcatggatct ttacaagctg gggctttgac
     7201 gacaacttat acagcttctc aaggattact ccttaaaatt ccaaatatgt ataaaatagc
     7261 aggtcaatta ctcccctgtg taatccacgt agcagcgcgt tctttggctg ctcaagcttt
     7321 gtctatcttt ggtgatcatc aagatattta tgcagcaaga caaattggtt ttgctatgct
     7381 ttgttcgcat tctgtgcaag aaaccatgga cttagctggt gtagcacatt tagctgcgat
     7441 taagggaaga gtgccatttt tacatttttt tgatggtttt agaacaagcc atgaaattca
     7501 aaaagttgaa gtgatggatt atgcgcattt tgatagatta ttagatagag aagctttgct
     7561 tgaatttaga aataatgctt taaatccaga aaatccaaaa acacgcggaa cggcacaaaa
     7621 tgatgatatt tattttcaaa ctagagaagt aagcaatcgt ttttatgatg ctttgcctga
     7681 tgttgttaat gaatatatgc aagaaatttc aaaaattaca ggtagagaat acaagccatt
     7741 tacttattat ggtcacaaag agccagagcg tgtgattgtt gctatgggtt ctgtaactca
     7801 agcacttgaa gaggtagtgg actatcttaa tgctaagggt gaaaaagtag ggattttaaa
     7861 agtttatctt tatcgcccat ttagtttaaa atatttcttt gatgttatgc caaaatcagt
     7921 gaaaaaaatt gcagttttag atagaaccaa agaaccagga agtcttgggg aaccacttta
     7981 tcttgatgta aaatcagctt tctatggaag agaaaatgct cctgttatag taggtggaag
     8041 atacggactt tcttcaaagg atgttgatcc tgctcaaatg atagcagtat ttgaaaatct
     8101 taaacttgat aatccaaaag atggctttac tgtaggtata gttgatgatg taactcatac
     8161 ttcactgagt actggagaga aaatttcact tggagatgaa agtacgatcg aatgtttatt
     8221 ttacggactt ggtgctgatg gaactgtggg tgcaaataaa aactcgatta aaatcatcgg
     8281 ggataaaacg gatttttacg ctcaagctta ttttgcttat gattctaaaa aatcaggggg
     8341 ttatacaaga agccatttaa gattttctaa aaaacctatc cgttcaactt atcttgtttc
     8401 aactccgcat tttatcgctt gttcggtagc ggcttatttg gaaatttatg atgttttagc
     8461 aggaattcgc aaaggaggaa ctttcctttt aaatagtatt tggaatgctg aagaaaccat
     8521 aagacaactt ccagatgcag taaagaaaac tttagctgaa aaagaagtaa atttttatat
     8581 catcaatgca accaaactag ctcgtgatat aggtttggga aatcgtacaa ataccattat
     8641 gcaatcagcc tttttcaaac ttgcaaaaat cattccttat gaagacgcac aaaaatacat
     8701 gaaagagctt gcgtataaat cttatagtaa aaaaggcgat gctattgtag aaatgaatta
     8761 caaagctatt gatgtggggg ctgatggact tgtaaaagtt gaagtggatc caaattggaa
     8821 aaatttagag cttaaagaaa aagaacaaac caatgcctat aaaggcactg aatttgttga
     8881 aaaaatcgta aaacctatga acgcagctaa gggtgatgat ttacctgttt cagctttttt
     8941 aggttatgaa gatggaagtt ttgaacacgg cacaaccgaa tacgaaaaac gcggtgttgg
     9001 ggttatggta ccaagatgga tagaggcaaa ttgtattcaa tgtaatcaat gcgcttcagt
     9061 ttgtccacat gctgttatca ggccattttt gattaatgat gaagaaatgg caaatgcacc
     9121 tcgtggagta aaagatcatg ctttagaagc taaaggaacc aaaggagaaa aattaagctt
     9181 taaaatccaa gtttctccac ttgattgtac aggctgtgag ctttgtgttc atgagtgtcc
     9241 tactaaagaa aaatctttgg ttatggtacc acttcaagaa gagatggatt ttggtgagca
     9301 agaaaatgcg gattatttat ttaaagaaat tacttataaa gatgatattt taaataaaga
     9361 aaccacaaaa ggagcacaat ttgcccaacc tttatttgaa ttccatgggg catgtcctgg
     9421 atgtggggaa actccttata ttactttaat tacaagattg ttcggtgaaa gaatgattgt
     9481 ggctaatgcg acaggttgta gttctattta tgggggttca gctccatcaa ctccttatag
     9541 aaaaagtgtg aaaaatggac acggtcctgc ttggggaaat tcactttttg aagacaatgc
     9601 tgagtttggt ttgggtatga aaattgcaac tgaaaacaca agacaccgca ttgaacatat
     9661 catgaatgaa agtatgcaag aagttccaaa tgctttatca gcccttttta aagattggat
     9721 tgcaaataaa gacaatggtg ctatgtctgt ggaaattaaa gataaaatga tccctatttt
     9781 agagcaaaat aaaaatatta aagccgtaca agatatatta gagcttaaac agtatttaag
     9841 taaaaaatct cactggattt ttggtggtga tggttgggct tatgatatag gctatggcgg
     9901 acttgatcat gttttagcaa gtggagaaaa tgtaaatatt ttagtgcttg atacagaagt
     9961 ttattctaat acaggcggtc aaagttcaaa atcttctaga acaggagctg tagcacagtt
    10021 tgcagcagca ggcaaaccta tacagaaaaa agatctaggt caaattgcta tgacttatgg
    10081 ttatattttt gtagcacaag taaattcaac ggcaaattat actcatctta tcaaagctat
    10141 cactgcagct gaggcctatg atggaccatc tttggtgatt tgttattctc cttgtatagc
    10201 tcatggtatt aaaggtgggc ttggttattc aggagagcaa ggtgagcttg ctacaaaatg
    10261 tggttattgg ccactttata cctttgatcc tcgtttagaa gagcaaggaa aaaatccttt
    10321 aactctaaca ggaaaagaac ctgattggga tttatatgag caatttttga tgaatgaagt
    10381 gcgttataat tcacttaaaa aagcaaatcc tgaacacgct gctgagcttt ttgaacgcaa
    10441 taaaaaagac gctcaacgtc gctatagaca gcttaagcgt atcgctatgg ctgattatag
    10501 caatgaggtt gaaagctgat aaaatatatt tttagtgcta cattgtgttt tagcactttg
    10561 tttgcacaag ataattttga agagtacttt aaacttatag ataaagaaaa tcgcataaat
    10621 tttaatactc ttcaaaaccc atttgtgaat cctacttttg aaaaattaag acatattaaa
    10681 attactgcaa ttatgcttga taaagtaaaa atttatgatc gatggtataa a
//
LOCUS       DAEBKH010000047        10397 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.047, whole genome shotgun sequence.
ACCESSION   DAEBKH010000047 DAEBKH010000000
VERSION     DAEBKH010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10397
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.047"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..682
                     /locus_tag="KIL20_000837"
     CDS             <1..682
                     /locus_tag="KIL20_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HBD2720877.1"
                     /translation="KESNASVELKVGTAPNYKPFNYKENSKLTGFDTDLVEEIAKKNG
                     IKIVWVETNFDGLIPALKAGKIDMIASAMSATDERRQSVDFTKPYYMSKNLYLKLKNN
                     DSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQVQSNKDLNIAVLALKNNKIDAIVAD
                     QDTAKGFLAENPELVSFYQETDGGEGFSFAFDKNKQKDIIEIFNKGIDEAKTDGFYDT
                     LIKKYELE"
     gene            complement(706..1344)
                     /locus_tag="KIL20_000838"
     CDS             complement(706..1344)
                     /locus_tag="KIL20_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HBD2720878.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKLDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(1341..2330)
                     /locus_tag="KIL20_000839"
     CDS             complement(1341..2330)
                     /locus_tag="KIL20_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD2720879.1"
                     /translation="MAYLKIKNFKKAYGGKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEVGDKIALKFNLSLAKELK"
     gene            complement(2334..3113)
                     /locus_tag="KIL20_000840"
     CDS             complement(2334..3113)
                     /locus_tag="KIL20_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD2720880.1"
                     /translation="MNENLSLKAKIYHYVVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAMSNV
                     NLNELIASNAMLGGSLMGAIFKLVLPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(3114..3953)
                     /locus_tag="KIL20_000841"
     CDS             complement(3114..3953)
                     /locus_tag="KIL20_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD2720881.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFILAPSKICNFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPTLFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYNF
                     KVL"
     gene            complement(3950..4759)
                     /locus_tag="KIL20_000842"
     CDS             complement(3950..4759)
                     /locus_tag="KIL20_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HBD2720882.1"
                     /translation="MMSKVILVVLDGLNCKSASINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSGIINNKLSFSKQTSIFDLCKEQGLKAGSAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGHFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDAGHKFGSHSIEYTNKTKKVDVLISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSICEILGLKHDKRYNDEILKAKK"
     gene            complement(4756..6081)
                     /locus_tag="KIL20_000843"
     CDS             complement(4756..6081)
                     /locus_tag="KIL20_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HBD2720883.1"
                     /translation="MKKVILTSAMLCSVLFGIQEHEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANITREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDAMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGADFDTESIQLINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPNL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVVENDNNFPYSSSREPNKSDDNEFILLEVKDFLKSK"
     gene            complement(6092..7138)
                     /locus_tag="KIL20_000844"
     CDS             complement(6092..7138)
                     /locus_tag="KIL20_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HBD2720884.1"
                     /translation="MSKKFFLSLGLVVLLFSNSQAIDENLIKAVQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYGIEHSDTDMSSAQEIAKFKAEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALSGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYENARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            7255..8238
                     /gene="corA"
                     /locus_tag="KIL20_000845"
     CDS             7255..8238
                     /gene="corA"
                     /locus_tag="KIL20_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HBD2720885.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            8259..8801
                     /gene="mog"
                     /locus_tag="KIL20_000846"
     CDS             8259..8801
                     /gene="mog"
                     /locus_tag="KIL20_000846"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HBD2720886.1"
                     /translation="MDTINIGVLTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAVCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(8798..8983)
                     /locus_tag="KIL20_000847"
     CDS             complement(8798..8983)
                     /locus_tag="KIL20_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HBD2720887.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLVRANKF"
     gene            9110..10297
                     /locus_tag="KIL20_000848"
     CDS             9110..10297
                     /locus_tag="KIL20_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HBD2720888.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIINIAWIGFGFLYLKELLISSNTRFENTLFLLSFLIITS
                     ILNLPLSIYKSFIKDKAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMKKLDDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGAITMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFSFLISPMLNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYTFFYLSHPSISDRIK
                     ALS"
     gene            10294..>10397
                     /locus_tag="KIL20_000849"
     CDS             10294..>10397
                     /locus_tag="KIL20_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HBD2720889.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKA"
BASE COUNT         3746 a         1706 c         1402 g         3543 t
ORIGIN      
        1 taaagaatca aatgcaagtg tagaattaaa ggttggaact gctccaaatt ataaaccttt
       61 taattataaa gaaaactcaa aacttacagg ttttgatact gatttggttg aagagattgc
      121 caaaaaaaat ggtattaaaa ttgtttgggt tgaaaccaat ttcgatggat tgattcctgc
      181 tttaaaagct ggcaaaatcg atatgattgc ctcagctatg agcgcaactg atgaaagaag
      241 acaaagtgtt gattttacga aaccttacta tatgagtaaa aatctttatc ttaagctaaa
      301 aaacaacgac tctcttcaaa caaaaaatga tttagaaggc aaaaaaatag gagttcaatt
      361 aggaacttta caagaaaata ctgcaaaagc tatcaaaaat gcacaagtac aaagcaataa
      421 agatttaaac atagctgttt tagcactaaa aaacaacaaa atcgatgcta ttgtagctga
      481 tcaagatact gctaaaggtt ttttagctga aaatccagaa ttggtaagtt tctaccaaga
      541 aacagatgga ggagaaggct ttagttttgc ttttgataaa aataaacaaa aagatattat
      601 tgaaatattt aacaaaggca tagatgaagc aaaaactgat ggattttatg atactttaat
      661 taaaaaatat gaattagaat aagcgtgaat tttcacgctt atagcttaaa aagttaaaat
      721 ttcatatttt ctctcttttg caatttttaa aattttttca tcaccattac atacaaaggc
      781 tttgctaaca gactctagta aaggtaaatc attgatagaa tcactaaaaa aataagaatc
      841 tttcatccat ttttcataat ctttacccaa atattcctta agtcttaaaa ccttgccttc
      901 cttaaagcta taaatcccat aagcttttcc actaaattta tcacccacac gctcgcattt
      961 tatggctatg ctttctctca ctcccaaaaa agaggcgatt tttctaacta aaaattcagc
     1021 cgtagctgaa attataatac acctttgatc ttgatatttg attataagtt ctttagcttt
     1081 ttcataaggt tttatataaa tttttataaa ttcatctact aaagatgaaa ttctatcttc
     1141 atttttaccc ttaacacttt gaagaaaaaa agtcataaat tcatccatat caagcttttt
     1201 ttcttgatat tgtttttgat aaaaaacaat tttttctaaa tattcttgag gtaaaaaacc
     1261 tttttcaaca caaaatttaa gccaaagttt agcactatcg ccttgtatta aagtatcatc
     1321 taaatcaaat aaaacaagct tcattttaac tcttttgcta aagaaagatt gaattttaaa
     1381 gcgattttat cacctacttc ataagtacta tgagtgctaa aatttaaagt atctacctta
     1441 aattcaattt cttgcactct aaccctatag cgtatgatat tacctagcaa tgatttttct
     1501 ttgatcttag cctctaagcc ttcgttagaa atttctatgg tttcaggacg caaggctata
     1561 tcttttttaa aatcgtgttt taaacccaag ctatcaagct ctttagggct taaaatattg
     1621 taatttccta taaagctagc cacaaaatga gattctggca aaagataaag attgtttgcg
     1681 ttggaatttt gtatgatttt accctcattc attaaaataa tcctatcgga taactctaaa
     1741 gcttcttctt gatcatgcgt tacaaaaata gtggtgagtt caagttcttt ttgaatttct
     1801 ttaatttgca cccttaaatg cttacgaatt ttagcatcaa gtgccgataa aggctcatca
     1861 agcaaaagta aatcaggttt agtcaccaaa gatcttgcta aagccactct ttgcatttgt
     1921 ccgcctgaaa gcttatgtgg ataagtttta gcgtattctt caagctcgac gagttttaac
     1981 atttttttca ctcttttttc tatgtccttt ttatccattt ttttgatctt taaaccaaaa
     2041 gctacatttt caaaaacgtt aagatttgga aaaagagcgt aattttgaaa aaccatacct
     2101 atatttcttt tttgaggact taatttagta agatctttat catttaaaga aatttttcct
     2161 ccattaattt ggctaagccc tgctatacac cttaaaagag tggattttcc acagccactt
     2221 gggcccaaaa gggttataaa ctcacccttt ttagcactaa aattaatatc ttcaaaaata
     2281 attttacccc cataagcttt tttaaaattt ttaatcttta aataagccat tttttactcc
     2341 ttaatcaaac tagctataaa agttgttata aaaattaaca caaaataaac tattaccaaa
     2401 gcactagaat aatgcccact ttgatttttg atattataaa gataaacttg caaagtctca
     2461 taagcacttc ctacaagaat atttgcgtat aaaaattcgc ctattaaaaa agaaaaactt
     2521 aaaaaaactg ccaccaaaat tccatttctt aaattaggca agacaagctt aaaaatcgct
     2581 cccattaaag aacctccaag catagcatta gatgcgatga gttcatttaa attgacatta
     2641 gacatagcat tatctaaagc cctatatata aaaggcaaag ctatagtaaa ataagtaaaa
     2701 atgagtatcc aagctgtgcc tcctatattg tcagcataaa gttgcaaaag ccccacacag
     2761 ctaactatag gaggtacagc aaaaggcatg ataataagta tatttacaaa ggcttttaat
     2821 tttaaaaaat aataatttag cacaaaaacc aaaggaaaaa caagaatcac agaaagtaaa
     2881 atactgccca cacaaacaag caaagaatgc caaagagcaa gtaaaaatct ttcgtcatga
     2941 aaaagttctt gataccattt aagcgtaaga tcatcaggca aaacacttac accccaagaa
     3001 gtggaaatag aatataaaaa agtagccatt aaaggcaaag ctaaaaacaa aaaaaccaaa
     3061 aacaaaacta cataatgata aattttagct tttaaactca aattttcatt catttaaagc
     3121 accttaaaat tatatttttt agaaaggaaa ttggctataa aggtaacaac aagcatgata
     3181 atagttataa tgatacttaa agcactagcc atataaggat caagattgat atcgcctgcg
     3241 attaaagcag cgattcttac aggagcgaca ttaaaatttc ccgaacttaa agcataaata
     3301 gtcgcataag ctccaaaagc attggcaaat aaaatcacaa aaacaccaaa caaagtagga
     3361 gcgagcaaag gcaaagctat ttttaaccaa tataaaaaat tgcctccacc taacatttta
     3421 caagcattta aatgtgaatt ttcaagactt ttaaaagctg gaagcaaaag caagatcgcc
     3481 aaaggaattt gaaaatacac ataaacaata tttaccccga aattagcata aacactaaca
     3541 aaaggctcta tacctaaatt cttcaaaaac acattaacta caccattgct tccaagaact
     3601 ataatgaaag caaaagctaa aggaactcct gaaaaattac ttatcatagt atttaaagaa
     3661 aagagaaaat tacatatttt tgatggagct aaaataaata aagaatagct cgccaaaagc
     3721 cctattaaaa gtccaaaaat actagaaata aaactgattt gtaaagaatt tataatgctt
     3781 tgtagataga atttggactc aaaaatatgt ataaaattgg ctaaagaata aatttcatcc
     3841 tcttctacat aaaaagcatt aaaaacaatc caaatcaaag gtgctatcat aaaaaaagta
     3901 aaaactataa aaaaaggtaa aatacttaaa aaggctagaa atttttcttt cattttttgg
     3961 cctttaaaat ttcatcatta tatctcttat cgtgtttaag tcctaaaatt tcacagatac
     4021 tgccacaaat ttcatcctgt tttatcttgg cattttcata cgaaaaagca ctaccaaaag
     4081 tgaaaaaagg cactaaaatt tcatcttcgc ttaagcctcc atgactttta ccctctgtca
     4141 taccatgatc gcttgtgatg attacattaa taccttgttc taaccaagtg ggcaaatact
     4201 cagaaatcaa aacatcaact tttttggttt tattagtata ctcaatagag tgtgagccaa
     4261 atttatgtcc tgcatcatct atattcatag aatgtataag agtaaaatct aaattatatt
     4321 tgtttcttaa atgctcccca tctgcaaata aatgagaatc taaataatca tcttcataat
     4381 aaaaatgtcc ataaggcaaa gttaaatttt catcttctat atggcgatgt aaagaaggaa
     4441 taaattcttt tttattataa agctcaaaaa cccaatgata agccgcactt ccagctttta
     4501 agccttgttc tttgcaaagg tcaaaaatgc ttgtttgttt tgaaaaactc aatttattat
     4561 taattatccc acttaaaaca ggctttacgc ctgttaataa gcactcgtat aaaggacgag
     4621 acatactagg aagttcgcat tctaaagaat aaaatttgcc caaattctct ttgcaaagcg
     4681 catttaaata tcccatattt atactagcgc ttttacaatt taagccatca agcacaacta
     4741 aaataacttt ggacatcatt tactctttaa aaaatctttt acttcaagta aaataaattc
     4801 attatcatca ctcttattag gttctctgct tgaagaataa ggaaagttat tgtcattttc
     4861 tacaactata tgagagtcat ctactatatc cacaccttct atggtttcaa aaggaaaaac
     4921 aaatttatca tttactaaag gctttttaga aattttattt ctatccttaa tatttaaaag
     4981 atctatataa gaaatttttt gagcttcatg agttttatca tctaatttaa ccttataaat
     5041 tcttttaaat tgagctacat tattaaaaca atgcttagta tcttcacctt ctttgcaagc
     5101 cttatcttta gtgccttctt tttgatctct ttctatgatg atgccgtatt tatcatctat
     5161 catattaaaa tcacctatgg aatggctttt atcttctaag aaatatttat aagtttttcc
     5221 ggtgaatttt ttatttttta catcaaattc tatgattctt agatattctt tacctttttc
     5281 attctcataa gcgttgttat tgtaaatgct tccttctaaa agcaaataaa gtttagaacc
     5341 atctttagag cttgccatag cttcaaagcc tttagaacgc ttgatattaa atttctcatt
     5401 ttctccatca ggcttatcgc taaattttaa atttggatta tcaggagaaa taagtttttt
     5461 accctccaca tacacatcaa aaacttcttt taaattccca ttcttatcaa aatgaagcaa
     5521 ataaggacca aattcatcac ctatataaaa ttcatcattg ataagctgta tactctcagt
     5581 atcaaaatca gccccactta aatacctttc tttggttgtt tcggtggtta taggataagg
     5641 gtatttttta tcactatctt taaaaaaaac tgtttttaaa agttcgtatt ttgagttttt
     5701 aaaatcaaat ttaaactcgt gagcataaag catagcatca taagaattat actttttacc
     5761 caagccatta tcactaatca cccaaaaaac atcttttttt ggaatatatt ttatcccact
     5821 atgtccttgt ataggttgat ttttaaaagg taaataaaaa tctgtttccc tgtttccctt
     5881 agatttaaaa gttccaattt tttcttctct agtgatattt gcaaatttcc cataagtttt
     5941 aaaaaaatca ggagcatcct taggaggttt tactgtactt ttagaatcta tgataatatg
     6001 ccctgctaaa ttggcctcat gctcttgaat tccaaataaa acactgcaaa gcatagcact
     6061 tgttaaaata acctttttca tccaatctcc tttatttcat atccactata actttttctt
     6121 gccaaagttg tggcaattct ttagcgcttt tttcccaagc tttttgatct ttgattgctc
     6181 ttgcattttc gtattgctca cttggtaaaa gtttagcttt tatatcatct ggcaaggtaa
     6241 tatgatcaat tcttattggc cttgcataac cttttgctag attgatttgt cctttatcag
     6301 aaagtataaa ctcacgagct aatttagccg catttggatg ttttgcgtat ttattgataa
     6361 tagttgtata gcccgaaata acactaccat cagcagggat taaaacttca taacgatctt
     6421 tgcccacttt atctctatag cctaaaccat taaaatccca aactaaaccc acttcaactt
     6481 cacctttttc aagattagct atgcttacat cattatttac aagtcttcct tgtttggcta
     6541 aagtattaaa aaaagctaaa gcaggactta aatctttttc atccccactt aaggcataat
     6601 tagctgccaa aactgcactc acagcttgag ctgctacact tacatcaccc acggtaattt
     6661 tataatttcc cttaagcaaa tcttgccaag ttttaggtat atcttttact acatctttat
     6721 tgactataaa agctatggtt cctgtataag ctaaaagcca atttccatct ttatctttag
     6781 cccaagttgg aatttgatcc cagtagcttg tcttaaaagg ctgagctact ccttgtttaa
     6841 ccgctatctc tccaaaagaa gctcctacat cccctatatc accgcttgca tttttctttt
     6901 cggctttaaa tttagcaatt tcttgagctg aactcatatc tgtatcacta tgttctatgc
     6961 cataaagatt tttaagatct gcccaagtat ccttccagtt tgcccaagta tcaggcatag
     7021 ctaaagaatt taccctacct tctgcttgca cagctttaat caaattctca tcaatagctt
     7081 gtgaatttga aaacaataag acaacaagac ctaaacttaa gaaaaatttc ttactcattt
     7141 ttttcctttc aaaaaatatt ttggaaattt aatgagtttt agaaacattt tagaaacaag
     7201 ttaattttta agcaaacaag gttataattt taaagtcata aacaaggagc gatcatgctt
     7261 tatatttata tcaaaactca aaatgcttta gttcaaagaa tcaattttaa tctcgatagt
     7321 caagaactac cacaaaatat tttatggatt gatttacttc atccaagtgc agcagaaatt
     7381 gcttttatat caagtgaatt taatcttgag tttcctacaa aagaagaaag ggaagaaata
     7441 gagcttagcg caaaatattg ggaagataat gcgacaataa ccatcaatgc tcatttttta
     7501 gtaagagatc ttaaaagcga tgaagaagat aggaatttaa tcaagcttcg cacagaaatt
     7561 gttacttttg ctaccgctaa aaatatctta tttactataa gatataacga atttagcact
     7621 tttgaagaaa ttcaagcaag gattttagct agtccgaaga attttgaaga tggttttgat
     7681 attattgata aaatgtttga agtgcgtgtt gaaaaagatg cggatttact agaatggata
     7741 gataaagaag caagacgctt aagaacaagt gttttagaaa aaaaagatga atatagttat
     7801 gatgaaatgc taaaggatat ttcaagttta caagagctta atatgcgggt aagagattct
     7861 ttgtttgata agcgtcgcgc tatgacttct ttgctaaaaa gcgataaaat cgataaagat
     7921 ataaaacaaa atctcactat agttttaaaa gacttaaatt ctttggttga atttagtgtt
     7981 tcacaactta atatcttaga taatatccaa accattttag ccagccaaat caacatagaa
     8041 caaaacaaaa tcattaaaat tttcaccgtt gcaactgttg ccatgatgcc acctacttta
     8101 ataggaactg tttatggtat gaattttaaa ttcatgcccg aacttgaact tcactatgct
     8161 tatcccatag tgcttggcgt gatggtaatt tctatcattt tacctttggt tgttttcaag
     8221 aaaaaaggat ggttataaaa atttattaag gagaaacaat ggatacaata aacataggag
     8281 ttttgaccct aagcgataga gcaagtagtg gtatatacga agataaagcc actgctgaaa
     8341 ttgaaagagt gttaaattca tatataaaaa atgatattat ttatcataaa gaattaatcc
     8401 ctgatgatta tgatttgatc attaaaaaat tactttatct agcagatgaa aaaaaatgcg
     8461 atttgattgt tacaagcgga ggtacaggtc cagcacttcg tgatgtaacc ccagaagcca
     8521 cggaagccgt gtgtgataaa atgatgccag gttttggaga acttatgcgc ttagaaagtt
     8581 taaaatatgt cccaacagct atactttcaa gacagagtgc aggaattcgc aataaatctt
     8641 ttatcattaa tttaccagga aatcctaagg ctataaaaga atgcctagag cctgtttttc
     8701 cagctatacc ttactgtatc gatttgatag aaggtgctta tatagaagca aatgatgaag
     8761 ttattaaggt ttttcgtcct aagaaaaaat gtcaaaatta aaatttatta gccctaacaa
     8821 gtctgcttaa ttgtctagca agtagacttg ctgaagcttc atctttgctt atcttttgta
     8881 ctttattttt aaacttacaa agcctgtcat ctaaaatcac atcattgatc ggaattttag
     8941 gcttttcttt ttgcttttgt gaaatctttt tcttaaaaaa cattctttaa tcctttttta
     9001 taaatataca tcaacttagt tgaaaagaat attattttag attttaaact attaacttta
     9061 tttcattatt ttaagctaga attcgaaaaa aaccaatcaa ggaaaaataa tgactttaat
     9121 tgcaatttta tgtctttaca cagcgctttt atcttggatt tcctatgctc aaattcgttt
     9181 cttagaaaga gaaaaagaca aacaagctca aattttaagc gaaaaagact atcaaaatgc
     9241 agcagatatt gccatcgaaa atgaaaaatt taaactattt tccaattttt ataatttaat
     9301 catcaatatt gcatggatag gttttggatt tttatatctt aaagaattgc ttatctcaag
     9361 caacactcgt tttgaaaata ctttattttt attatctttt ttaataatca caagtatttt
     9421 aaatctacct ttaagtattt ataaaagttt tatcaaagat aaagcccatg gtttttcaaa
     9481 tatgactgta aaacttttta tcaaagatac tatgaaaagt cttattttaa ctttaatatt
     9541 tggattttta atcctttatg ctttgctttt ttgctatgat ttttttggaa ctttttggtg
     9601 gattgcggcc tttatttttg ccttttgtat tatagtgatt ataaatctca tctaccctac
     9661 cttgatagca cctattttta ataaaatgaa aaaactagac gatgaaaatt tattgaaaaa
     9721 aatcagctct ttaatgaaac aatgcgggtt tagtgcaaat ggggtttatg ttattgatgc
     9781 aagcaaaaga gataagcgtt taaatgctta ttttggtgga ctttttaaaa gcaaaagagt
     9841 ggtgcttttt gatacattat taaaagcctt aaatgaaaga gaacttttag ctgttttagg
     9901 acatgagctt ggacattttg ttcataagga tattatcaaa gctttattta acggcgctat
     9961 aactatgttt ttactttttt ttgtttttgc aaatttacct gaatttgttt acttagaaag
    10021 tcatctagaa ggagtaaatg gtggcgtgtt tgctctttta tttatcttgg caaatatttt
    10081 tagcttttta atctctccta tgcttaatgc cttaagtaga aaaaatgaat ttgcagctga
    10141 tcaacacgga gctaaagtta caagcaaaga agatatgaaa aatgcattga tagctctagc
    10201 aagagaaaat aaagctttta tcaaaacaag taaaatatat acattttttt atctcagcca
    10261 tccaagtatt agtgatagaa tcaaggctct ttcttgacta taaaaaatgc tcttatggaa
    10321 gctaaatcta gcttaaaagg ttatgaaaat gaagcagtat ttatactctg tgaatatcta
    10381 aaaaaagata aagcttg
//
LOCUS       DAEBKH010000048        10365 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.048, whole genome shotgun sequence.
ACCESSION   DAEBKH010000048 DAEBKH010000000
VERSION     DAEBKH010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10365
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.048"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..430
                     /locus_tag="KIL20_000850"
     CDS             <1..430
                     /locus_tag="KIL20_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720890.1"
                     /translation="TNAFDNEIKELKEIKHNFKDFNIAFYGFNACDTLKSKLKAKFIS
                     YENSIKNNGFSLLNLNPTLSYKIAADIVLDAYDSGADFMVVKEEKDFYLFDTCAKKLM
                     QTSGREFEDFYILSRFEFLALIEGIQAPSLKNHTLKVSLI"
     gene            427..810
                     /locus_tag="KIL20_000851"
     CDS             427..810
                     /locus_tag="KIL20_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HBD2720891.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIHTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            803..1486
                     /locus_tag="KIL20_000852"
     CDS             803..1486
                     /locus_tag="KIL20_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmD family RNA methyltransferase"
                     /protein_id="HBD2720892.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPPKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALIAAEA
                     LSNYALKAYAIELDIKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDIREGFSDIYEKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYSS"
     gene            1545..2591
                     /locus_tag="KIL20_000853"
     CDS             1545..2591
                     /locus_tag="KIL20_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HBD2720893.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNNDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            2591..2932
                     /locus_tag="KIL20_000854"
     CDS             2591..2932
                     /locus_tag="KIL20_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720894.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKSKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            2995..3192
                     /gene="flgM"
                     /locus_tag="KIL20_000855"
     CDS             2995..3192
                     /gene="flgM"
                     /locus_tag="KIL20_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HBD2720895.1"
                     /translation="MINPIQQSYVANTALNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATAAAIADSLI"
     gene            3237..3671
                     /locus_tag="KIL20_000856"
     CDS             3237..3671
                     /locus_tag="KIL20_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HBD2720896.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFNINDGTNNAYGDKKTNPESIFKINV"
     gene            3681..5507
                     /gene="flgK"
                     /locus_tag="KIL20_000857"
     CDS             3681..5507
                     /gene="flgK"
                     /locus_tag="KIL20_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HBD2720897.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRFP
                     DLQNTGILQDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNNDHNANNDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLSGVDSGNDMANKIIQ
                     LQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            5524..6288
                     /locus_tag="KIL20_000858"
     CDS             5524..6288
                     /locus_tag="KIL20_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HBD2720898.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFIAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNESSLYELFYQAYQERENTTDAILAFMQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHAHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKEIDKFKE"
     gene            6292..7056
                     /locus_tag="KIL20_000859"
     CDS             6292..7056
                     /locus_tag="KIL20_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HBD2720899.1"
                     /translation="MGFEHLNTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFFTTLGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(7049..8230)
                     /locus_tag="KIL20_000860"
     CDS             complement(7049..8230)
                     /locus_tag="KIL20_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HBD2720900.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYFMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFV
                     IFIVMLILAYKNFHSFAFSCDFLFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISK
                     AFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRL
                     EVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNF
                     N"
     gene            complement(8227..9786)
                     /locus_tag="KIL20_000861"
     CDS             complement(8227..9786)
                     /locus_tag="KIL20_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HBD2720901.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLHKLNLGDKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLACAIRENQDKTILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            complement(9776..10363)
                     /locus_tag="KIL20_000862"
     CDS             complement(9776..10363)
                     /locus_tag="KIL20_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HBD2720902.1"
                     /translation="MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKY
                     NKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYKELEEVKAVQENTHISKIE
                     IDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWTLKANELDKQKQDSW
                     LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
BASE COUNT         3918 a         1635 c         1489 g         3323 t
ORIGIN      
        1 aaccaatgct tttgataatg agatcaaaga acttaaagaa attaaacata attttaaaga
       61 ttttaatata gctttttatg gttttaatgc ttgcgatact ttaaaatcca aacttaaggc
      121 taaatttatt tcctatgaaa acagtataaa aaataatggc tttagcttgc ttaatctaaa
      181 tcctacgcta agctataaaa tagccgcaga tattgttttg gacgcttatg atagcggggc
      241 tgattttatg gtagtaaaag aagaaaaaga tttttatctt tttgatactt gtgctaaaaa
      301 acttatgcaa acaagtggaa gggaatttga agacttttat attttgagcc gttttgagtt
      361 tttagccctt atcgaaggca tacaagctcc atcattaaaa aatcacactt taaaggttag
      421 tttgatatga aaatctcttt agaatgcaaa gatctcatca tagaaaaaac tttagaactt
      481 tttttaaaag atcatttggt aatgaaaaaa aattgtgatt tcatcattag cgatgaaaaa
      541 attcataccg caaaaccctt atttatcatc tctaaaaact ctccattttt aagcatacca
      601 tttagcaaag aagccttgtt tgagtcttta aatgaatttg ataatgcctt aaaagcagca
      661 gctttgcaac ttgcacttga acaaaaacga ctgcttgaag aaaaaattga cgctattgct
      721 ttggaattta aaaaagatta tgaaaataaa atcgatcttg ccataaaaga tcttaaaaac
      781 aaactcgtaa aagcacttaa tgatgaatga tgaatttata agcgttaaag acttttttaa
      841 tcacaatgaa aaaagaaaaa aatttcttca aaaacaagaa attaaacctc ctaaagaaaa
      901 aacaaaaaaa actaaagaaa caaagcttta tacaaatata gaaagtggta aatacaaagg
      961 gaaaaaacta cttttaccta gtcttacaac aacaagaagt actaaaagca tagtcaaaag
     1021 ttgtgttttt aatgtaataa gagaagattt aagaagtaaa attttcattg aagcctttgg
     1081 cggaagtgct ttaatagcgg ctgaagcact aagtaattat gctttaaaag cttatgctat
     1141 agaacttgat ataaaagctt ataaaattgc tttagaaaat gctaaaaata tagatccaaa
     1201 tttagaagtg atccatgcaa atacttttga aattttacct aaactcatag aaaattcaaa
     1261 aaatgaaatc atcttatatc ttgacccacc ttttgatatc agagaaggtt ttagtgatat
     1321 ttatgaaaaa atttatcatt ttttagaaaa tttagattta aagactttaa atttaatcat
     1381 ttttgaacac cactcaacca taaaaactcc cgaaaaaatc caaaattttc aaaaagtcaa
     1441 agaaaagaaa tttggatcaa ctagcttaag tttttactct tcttaactca cttggaacac
     1501 tttttgcttg atctatcatc aacaatagat taaaggaaga atccatgaga gttttaacga
     1561 tatttttact ctttatgaca agcatttttg cagtgcaaat caaggatgta gcaaatactg
     1621 taggtgtaag agataaccaa cttataggtt atggacttgt tgtagggctt aatggaagcg
     1681 gcgatggaac aagctctaaa tttacactac aatctatctc aaaccttttg caaggtatga
     1741 atatcaaagt agatcctaat gatatcaaat caaaaaatac cgcagctgtt atggttacag
     1801 ccaaacttcc agcctttgca aaaagcggag ataaacttga tattaccgtt tcatctatgg
     1861 gtgatgcaaa atctttacaa ggtggaacac ttttactaac tgcacttcgt gggattgatg
     1921 gtgaaattta tgctatagca caaggctcta tctcaacagg aggtttaaca cctagaccag
     1981 gaggagcagg ttctcactca actgctgcaa ctgtaatggg cggagctaat gtagaaagag
     2041 aaattccaca aaattttagc caaaacaatg atctaacctt aagtttaaaa gtagcggatt
     2101 ttaaaaccgc aaacgatata gaaagagttt taaatactgt ctttggcgaa gaagtagcta
     2161 aagccatcga ctctcgcaca gtaaaactca aaaaacccga agatctttca aatgttgatt
     2221 ttatggcaag agttttagaa caagatatag cttataaacc acaaagcaaa gttatcatcg
     2281 atgaaagaac aggaacagtg attgctggag ttgatgtaga ggtagaacct gttttaatca
     2341 ctcataaaga tatcactata aaaatagatc caaacaataa cgcagtagct aatcaaaatg
     2401 aaatcgatat gaaagatggt ggttttgtag atccaagttc aaatacctta agaatcaaca
     2461 atgccaaaag cacagttgca aatatagcta gaatgcttaa caaacttgga gcaaccccaa
     2521 atgacattat cgctattatg gaaaatttaa agcgcgcagg tgcaattaac gcggatttgg
     2581 agatcatcta atgaaagtgg ataatttttt aaatacttat agtatgaata gcgctttact
     2641 tgatcgtgca gccaaagcaa gaagtttaga atcaagcatc aaaataaatg acaatgatat
     2701 agttacaaag agcaaagaag atgaagcctt aaaagaacaa acggatgctt ttgaggcatt
     2761 ttttttaaag caagttttag atgtatcttt aaaaagtcaa aattcactct ttggaaaaga
     2821 tgccagcgat gaaatatact cttccatgta taatgatacc atgagtaaag ctttaagtgg
     2881 aggtatgggt ttttcaaaat tattatacga ttttttaaaa gaaaggggtt aagtttttta
     2941 aatttaggtc gatatggttt gtagaggatt ataactaaga tcaaggaggc agaaatgatc
     3001 aatcctatac aacaaagtta tgtggcaaat accgcattaa atacaaatag aatagataaa
     3061 gaaactaaaa caaacgatac tcaaaaaacg gaaaatgata aagcgagtaa aatcgcagag
     3121 cagattaaaa acggtactta taaaatcgat acaaaagcta cggctgctgc gattgctgac
     3181 tctttaatct aaaaactttc attctccttt ttttgagaga gagaaaagga gaaaatatgc
     3241 ttaaacaaag acttgatgaa gtaaatgcta tcttagcaaa acttattgct ttaaccgaag
     3301 aagatataga aaatatcaaa gtggctaaac atgagagtgt aacgccaagt gtagaagaaa
     3361 aaaacaaact tatcgcggaa tttattacag ctaaaaaaca acttgatgtt gccttagttg
     3421 agctaaataa tagctctaca aaagggctta gtgaactctt agatgatgaa gataaacaaa
     3481 aactagatct acttaaaaaa aatcttcaaa accttcatag taaaaacaaa gagtatgcta
     3541 aatttgttct tattgtcaaa gattttcttg atggcttagt aaataaaatg tttaatatca
     3601 atgatggaac aaataatgct tatggagata aaaagacaaa tccagagtca attttcaaga
     3661 tcaatgtata aggatttata atgggtattt ttggaacatt atacacaggt gttacaggct
     3721 taaaggcaag cgaagttcaa atcgcaacaa ctggaaataa tatctcaaat gctaatgcaa
     3781 ctttttatac acgccaaaga gtggtgcaaa ctacaaatgg atatattaca acaggtggag
     3841 ttcaagtagg tacaggaact gctgtagaaa gtatagtgcg tttgcatgat gagtattctt
     3901 actataaatt aaaaggtgca tctactcaac tagaatatac taaatatatg gcttccactt
     3961 tacaagaaat tgcgcagcgt tttcccgact tacaaaatac tggaattttg caagatttag
     4021 aaaattataa caaagcttgg aatgattttg catctaaccc caacgaaaat gccacaaaaa
     4081 tagcccttgt aaaagcttct cagaccttaa cagaaagcgt taataacact tttgcaacct
     4141 tagataaaat ccaaaaaaaa gtaaatgatg atattaaaaa tacagttgat gagattaata
     4201 gaattggcga agaaattgct actataaata aacaaattta tggacaagaa gccttaccaa
     4261 cagaacacgc aaatgaactt agggatagaa gagatgaact tgagcttact ctttcaaagc
     4321 tagttagtgc agttgcaagc aaaaatgaaa tcaatcaaga caatcgcctt gatacaacca
     4381 tcactgatcc aggacatcaa tacaatctaa gtatagaagg ttttagtata gtagatggaa
     4441 taaattttca tcctttaaag cttgattatg atgataaaaa taaatcttat agcatttatt
     4501 atgaaactcc tgatgaaaaa gttcgcgatc ttactgcaaa aattagcggt ggacagcttg
     4561 gtgctcaact tgacttacgc ggtagaaact atagcaaaag cgaaggaaaa tatgaagatg
     4621 gaattatcca aggttatatg gattctttag atacttttgc taagaccatg atcaatgaaa
     4681 ctaacaatct ttatgcaagt tctgcgaaaa gttctgttac ttctgattat ctatctgggc
     4741 ttaagggaga tattccttta gttaattacg atagaaccat acaaccagga agttttgata
     4801 tagtcattta tgatgataaa ggcgataaaa aactcaccaa aaccatcacc atagatgtaa
     4861 atacaaccat gaatgatatc atgcgtcaaa tcaatgctaa cacagatgat aataacgacc
     4921 ataatgcaaa taatgatgtt gatgatcata tcaatgcaag ttttagctac gatgcaaaaa
     4981 ctggagatgg tttatttcaa atcaatgcaa aatcaggttt taaggtagcc attgaagata
     5041 agggcacaaa tttcgcaggt gcgtttagca taggtggttt tttcagcgga actgatgcaa
     5101 gtaatatgaa agtaaaagat tccatcttaa atgatccaag cacagtaaga gcaagtttaa
     5161 gtggggttga tagtggaaat gacatggcaa ataaaatcat ccaacttcaa tatgaaaaag
     5221 ttaattttta taatgaagat ggcactatcg ataatcttac catggaagaa tattaccgca
     5281 aacttacagg taaaatagcc tcagatggtg aaaataacaa tgtcgtcaat tcaagcaatg
     5341 aaactcttta taattctgtt tatagcgagt accaatctaa aagtggcgta aatacaaatg
     5401 aagaattagc cgcccttata caatatcaat caagttacgg tgcagcagca aaaatcgtct
     5461 ctaccgtaga tcaaatgctt gataccttac tagggcttaa atcttaagct ctagtaatat
     5521 caaatgaaaa attttatcca tcttaaagct aagcttgatt ttttagccaa tcaaaaaaat
     5581 accaatcatt ccctttttga aactccagat cctttgcaaa ttgctaaaat tcacaatgat
     5641 gaatttattg ccttaatttg tgctttattt gcctatggaa atgctaaaaa tatagtaaat
     5701 tttctaaaga aacttgattt ttctttatta aaccttcaag aaaaacaaat aaaaaaagaa
     5761 cttaaaaatt taaaataccg cttccaaaat gaaaaagata tacaagaaat ttttatcact
     5821 ctttcaaggc tgaaaaatga aagttcactc tacgaacttt tttatcaagc ctatcaagaa
     5881 agagaaaata ccacagatgc catcttagct tttatgcaaa aaatcaaaac cttaaattca
     5941 tattcaagtt atggatatga ttttttcttt ggaaaaattt ggcaaaacac ccctacttca
     6001 cctcttaaac gctataatat gtatctaaga tggatggtta gaaaagatga acttgatctt
     6061 ggacttttta ccaaaattca caccaaagat cttttaatcc cacttgatac acatgcacat
     6121 aaaatttcct tgactttagg acttctaaag cgtaaaatat atgattataa aagtgtttta
     6181 gaactcacac aaaatttaaa aaaattagat gcaaatgatc ccataaaata tgactttgca
     6241 ctctatcgtt tagggcaaag taaggaaatt gacaaattta aggagtgaag aatgggtttt
     6301 gagcacttaa atacaattta ttatttcata cttttttttg tagctctttt tgctggtttt
     6361 atagattcta ttgtaggtgg aggagggctt attactctac cagcactcat agcctgtgga
     6421 attcctgcgc atttatcctt agcaacaaac aaactccaaa gcgtctttgg ttcttttaca
     6481 gctactttaa cttattttaa atccaccact ctacctcatc ttgcttgggg tgtttttttc
     6541 acaaccttag gagcagctat aggaagttat agtgttcttt ttgtaaaaga tgagcaatta
     6601 aagcttatta tcttaatctt tttaactctt accttcttat atacagcctt acgtcccaac
     6661 ttaggcaaac acgaaagcga acctaaaata aaaaatatca aaatttttca tttaatttgt
     6721 ggcttaactt taggatttta tgatggattt ttagggcctg gaacgggttc attttggatt
     6781 tttgcttgtg tgatgctact aggttttaat atgagaaaag cgagcattaa tactaaaatt
     6841 ttaaatttca caagcaacat cattgctctt gctatatttt tatggcaata tgaactttta
     6901 tgggctgtag gtttgcttat gggtgtagga caagttttag gagcttattt aggctcaaaa
     6961 cttgtattaa aaactaatgg aaagtttata aaaactttat ttttaatcgt tgtaggagct
     7021 actattatta aagtagcttg ggattatttt agttaaaatt gacccctgag ctaagctccc
     7081 acataggtaa aaatatacct aaagccaaaa acaaaactaa aagcgctaca aataaagtca
     7141 tcataggctc taaaaaaatc aaaaatctat ccatcaaatt ttcgcttttt tgttgataat
     7201 atttggcaat ttcttcactt aatacttcaa gtctcccact tttcatcgca acactaagca
     7261 tagaaaacac caaagaatca aaaatatcaa tctttttaaa agcctgactt aactcaagac
     7321 cagaatctat aaaactaaaa agttttttat actgaaaaat taaaaattta ttttcaagcc
     7381 ctataatagc taaatcaaaa gctttagata ttgaaattcc attttttaaa agcaaagaaa
     7441 aaaccataaa aaaataataa ttttgattat aaataatcaa acgagaaatc aaaggtactt
     7501 ttaaaaataa aaaatcgcaa gaaaaagcaa aagaatgaaa atttttataa gctaaaataa
     7561 gcataacaat aaaaataaca aacaaaaata tgcaaaaaat tccatagtca tctaaaaaat
     7621 tataaatttc taacattaca tgcgtgataa aaggcaaact cgcgcctaaa ttttcaaata
     7681 aatctttaaa attaggcact acaaaaagca ttaaaaacaa aaatgctccg ataatactta
     7741 aaaaaaccaa agtaggatat ctaaaagcct tttttaattg tttttgactc tctaagcttt
     7801 tttctcgaag tttagaaatt tgactaaaca cttcactgat ttttcctgtc ttttcagccg
     7861 ttttaatcaa agctaactcc gcacgattta atccaaaatt agcattttca aaagcttgat
     7921 ttagattttg agctaaaatt aaattgtcta atattttttt cataatcttg caagaatgca
     7981 taaaatataa ttctctaatc gcttcttgaa cacttaatcc aacttcacac aacaaagcta
     8041 gctctttaaa aaagagtata aaattttcat cctttaatct ctgaaaatta gatttttgaa
     8101 tttcttttat atcaatgatt ttccaattct ttgataaggc ttttgcttgt gctgtattta
     8161 aattttcagc ttttatagtt tttgtataat tttgattgtt tttaagaaat tctacttcat
     8221 aaaatttcat cttacaaccc ttaaaagctc atctatactt gtaagacctt ctttggcttt
     8281 ttttaaacct tgttcaaaca tagtttgaaa gccatatttt tttgcaagct ccattaaaat
     8341 cgttttatct tgattttccc taattgcaca agctaaatct tcattgatct ctaagcattc
     8401 agcgattaat tctctgccaa aaaatccact atgatgacaa cgctcacatc cttttggttc
     8461 aaaaaattca ccttcaaatt caatataatg ttttttgctt ttttgcttac accaaggaca
     8521 aagttttcta accaaacgct gtgctataac aagactcaaa gccgatgcta tcaagtaact
     8581 ttttgcttgc atatccaaaa gcctatcaat ggtactaaga gcatcattag tatgcaaggt
     8641 gcttaaaagc aaatgacctg ttaaagaagc tttaagtgca atatctaaac tttcttcatc
     8701 gcgaatttct cctatcatga taatatcagg atcttgcctt aaaattgctc ttaaaacact
     8761 attaaactcg actccaactt ttgaattaag caaaatttgc tgcactaaag gaattttata
     8821 ttctatagga tcttctgcgg agataatctt tttttcaata cttttcaatt catttaaaca
     8881 cgcgtataaa gttgtgcttt taccactacc tgtaggaccg gttaataaaa tcattccatt
     8941 gggacgatgt aaaatctttt ttaaaatttc taaattttta tctccaagat ttagtttatg
     9001 caaatccaaa atttctttat catgttttaa aattcttata acaacacttt cgccataaat
     9061 caaaggcaaa catgaaacac gaaaatcata tctttcattt tcaaaatcta attcaaaact
     9121 tccatcttgc gtttttcttg attcagctaa attcaaacaa gctaaaaatt tgacatgaaa
     9181 aaccaaagct tcataaatat ccttctcaaa aatagcaaat tcacgcaaaa ttccatcaac
     9241 cctaaaccta atcaaagcat catcattcct tgcttctata tgaatatcac tcgcatgaaa
     9301 agataaaatt tcatgtaata aaaaatcaaa aatttgactg atgcaacttt gatcatctct
     9361 tttgtgattt tcttgccatt caagtctaag cttaatgctt aatcttttaa tctcctcttg
     9421 aatgcgaatt tgatttaaaa ttttagctat ctttaattca tcggcaattg cagtgtcgat
     9481 tttttcacaa atcataaaag tcttaacttg ctctaaaagc tctaaagaac aaggtttgga
     9541 tctaataatc ataaagccgt cattgttttt aataagcaga aatttaaatt ttaaaagtaa
     9601 agaaaaaggt ataccttcat aaataaaatc attatcttca tctaaatcaa caaaatgtaa
     9661 attacaaaaa tttgctaatt ttttaaaaaa atcccaagaa gtgatattaa atttagtgca
     9721 aatttcatca agacttattt cattatcaat ataagcttga aaaattttat ccattctact
     9781 ttccatctaa ttccattaaa ccataataat ttatataagc atctaaagca ctttgagctt
     9841 ctttttcttc acctaaagct cttttagcct gagcaaaaat cagccaagaa tcttgttttt
     9901 gcttgtcaag ttcattggct tttaaagtcc aaaatattgt cttttgataa gctttaatat
     9961 caaaatactt cttagctaaa tttaaagcct tttcatagct tggattttga taaaaagatt
    10021 tttttaaatc agaaatattt aaaattttag aatcaatttc tatcttacta atgtgtgtat
    10081 tttcctgcac cgctttaact tcttctagtt ctttatataa cttttcccta gaaatcttat
    10141 ttttttcttg taaaatttgc gcttgaagaa tcttttgctc taaatgcttt ttatgttcaa
    10201 tagcttgcaa ataaatattt ttttgcttat tatatttttg cattagcaca aaaaaacaaa
    10261 atgctataac tgatattaaa ataactaaca ataaatattt taaatatttt ttaagtaaaa
    10321 agtatttata cctaagctca agctctttaa ttctttcttg catat
//
LOCUS       DAEBKH010000049        10259 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.049, whole genome shotgun sequence.
ACCESSION   DAEBKH010000049 DAEBKH010000000
VERSION     DAEBKH010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10259
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.049"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..1190)
                     /locus_tag="KIL20_000863"
     CDS             complement(<1..1190)
                     /locus_tag="KIL20_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biogenesis protein"
                     /protein_id="HBD2720903.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSNPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNENKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELAGQKFFISWALSY
                     EQLP"
     gene            complement(1209..1904)
                     /locus_tag="KIL20_000864"
     CDS             complement(1209..1904)
                     /locus_tag="KIL20_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD2720904.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETSHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(1891..2661)
                     /locus_tag="KIL20_000865"
     CDS             complement(1891..2661)
                     /locus_tag="KIL20_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD2720905.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFANEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAELIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVITAYLGDFDANS"
     gene            complement(2658..3710)
                     /locus_tag="KIL20_000866"
     CDS             complement(2658..3710)
                     /locus_tag="KIL20_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HBD2720906.1"
                     /translation="MMVRIKVSHLIFLIASIVFIFVSPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLDIQSTPGLRMVVFSIVLILVMLFARKGIMGYYEL
                     SDVIRGIKKRFKRSEK"
     gene            complement(3710..4606)
                     /locus_tag="KIL20_000867"
     CDS             complement(3710..4606)
                     /locus_tag="KIL20_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HBD2720907.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(4625..5734)
                     /locus_tag="KIL20_000868"
     CDS             complement(4625..5734)
                     /locus_tag="KIL20_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HBD2720908.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSTLSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(5756..6871)
                     /locus_tag="KIL20_000869"
     CDS             complement(5756..6871)
                     /locus_tag="KIL20_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HBD2720909.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDNFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNNPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVDNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(6902..7336)
                     /locus_tag="KIL20_000870"
     CDS             complement(6902..7336)
                     /locus_tag="KIL20_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HBD2720910.1"
                     /translation="MIIRWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(7345..7536)
                     /locus_tag="KIL20_000871"
     CDS             complement(7345..7536)
                     /locus_tag="KIL20_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HBD2720911.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(7588..8094)
                     /locus_tag="KIL20_000872"
     CDS             complement(7588..8094)
                     /locus_tag="KIL20_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HBD2720912.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(8103..9134)
                     /locus_tag="KIL20_000873"
     CDS             complement(8103..9134)
                     /locus_tag="KIL20_000873"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HBD2720913.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAVVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILEKAPSVV
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(9134..>10259)
                     /gene="flgR"
                     /locus_tag="KIL20_000874"
     CDS             complement(9134..>10259)
                     /gene="flgR"
                     /locus_tag="KIL20_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HBD2720914.1"
                     /translation="IEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDVD
                     TLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASVM
                     FFGESGVGKEVFSRYIHTHSKRSNKPFVAINMAAIPANLIESELFGFEKGAFTDANAT
                     KIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISATN
                     ANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEKQ
                     LSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLEK
                     ELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDR"
BASE COUNT         3622 a         1974 c         1203 g         3460 t
ORIGIN      
        1 aaaggcaatt gttcataaga aagcgcccaa gaaataaaga atttttgacc cgcaagttct
       61 atcataatag gtttattata ttcaaaaata taaaattctt tactttcatt tttatagctt
      121 aattctaatt ttaaagcatt agagccagtt aattctaagt ttttattctc attgcttaag
      181 gcaaaatctt taaaatgcaa taataaagaa tttttccaat tttgaggctc gccaaaagta
      241 gaaatcaaca tagttctacc cacttctaac caagcagatt taaaccataa ccaaaaactt
      301 tcatcttgag gtctattgga accttctaaa gcttcttgcg catgcaaaga agcagcttta
      361 actacaaaac taatatcatt aatttcataa agccttcttt ccttagcatt tgccttttct
      421 ccaattttaa ggtctaaatt ttgtccatct agcatactta gaaaatgtaa gttttcactt
      481 gaacttaaag ttaaattttc gtcaattttt acaaaaggtg ctttaacatt atcattcata
      541 aaagcaaagt taaccccttc tatattctta acttcacctt tttcaaattt aacatcaaca
      601 ccttgagatc ctttttgaga aagcattaaa accaataaag gattagaatt attattttct
      661 ttataagtat aatgagcatt taagattaaa tctttatatt ttaatacagc ttgatcatca
      721 cctaaattaa gttttagttt aaaagaatta gcaaaaggca aatttcctat ataacgatca
      781 ttaaccgcac tatagcgttc tccatctttt atagcagaaa tgcgcaaaga agtcttagaa
      841 ctttctataa gtgaattttg agtatgctct ctaataggta aaataccttc aaaaccagca
      901 tatcttgtca ttgcagaacc cactaaaata aataaaaaag aaatatgaaa aatcattaaa
      961 ggcaattttt taagcccaaa cattttataa cgaaacatcc cgcatagtaa attaatacca
     1021 agcaaaagtt gtatatattc aaaccaaaaa gtatcataaa ccattgccca agccgtagga
     1081 gttccatagg cactttcaat aaaagttgcc aaagcacaaa aaagcgcaaa aagcaaaaac
     1141 aatacaaccg aaactcttaa atcccctatg ctttttatta tatttttcat tctttttcct
     1201 ttaaaatttt aaagccctaa atatttcttt ctaatctcat catcacctat taaattttta
     1261 gcctcgtttt ccattacaat gcgaccattt tccaaaacat aagcataatc acttattttt
     1321 aatgcagaat aagcattttg ctctaccaaa agaatagtta taccctcttc ttttaaacgc
     1381 acaataatat caaaaacttc acccacaatc tttggagcaa gtcccaaaga aggctcatcc
     1441 aacatcaaaa gttttggttc gctcattaaa gcccttgaaa tcgcaagcat ttgcgcttcc
     1501 cctccactca atgttccagc taaagcatgc tttttacttg caagtcttgg aaaaagttta
     1561 tacatttgct ctcttaaatg ctcataattt tcagcattat taaaagcacc tatttttaaa
     1621 ttttcctcta cgcttaaatt aataaaaaca cgccttcctt caggaactaa agctatacct
     1681 ttttgaacta aagtatgagt taaatgcctt ttagtatcat aacctaagaa attaacctca
     1741 ccagttcttt taactgagtt taaaagcgca tttaaagttg aagttttacc tgctccattt
     1801 gaacctataa gagaaacaat atggcttgtt tccactttaa aatcaatccc tttaacagct
     1861 tcaattaatc cataataaac atgcaaatct ttaactatta gcatcaaaat cccctaaata
     1921 cgcagtaatt acttctttat gatttacagc atcgcaaagt ttaccttcaa aaattgtttt
     1981 tccataatca agtaccaata cgcgatcgca caatttattt acaaatttca tatcatgctc
     2041 tataagcaaa acgctaattt tataatcttt tcgtaattta aaaatgagct cagcaagttc
     2101 atcgctctca gagctattca tcccagcggc tggctcatca agcaataata atcttggttg
     2161 agtagccatt gctcttgcaa tctcaacttt tctttgttgt ccataactta agctagtagc
     2221 cttttcattg gcaaattctg caataccaag ttcttctaat attgcataag ccttctcttt
     2281 aaatacttgt tctatttttc caaaacgccc taaatgcaaa aaggcttcaa aaatattata
     2341 tttcatttgt ttattaaaac caataagaac attttcaagc acattcatgc ttgaaaaaag
     2401 cctaatattt tgaaatgttc tagctattcc taaatgcaca atcttatgag gttttaagtg
     2461 gtcaattctt tctcctagaa attcaaccga acctgaacta ggtttatagt tacctgttat
     2521 aatattaaaa agagttgttt tgccagcccc attaggtcca attaaagcaa aaatttcacc
     2581 ctcattgatt ttaaaagaag tttcattaat agctttaaca ctaccaaaac tttttgaaat
     2641 ttgttttaat tccaaaatca tttttcactc cttttaaaac gctttttaat ccctctaatc
     2701 acatcactca actcataata acccattatg ccttttcttg caaaaagcat tactaaaatc
     2761 agaacaatag aaaaaacaac cattctaagc cctggcgttg attggatatc aagatttaaa
     2821 gaatctattt ttatatttaa ctcatctaaa aatctaagcc actcacttcc accaataact
     2881 aatatcgcac ctataatagc acctgtagta gaaccaagtc cgcctaaaac aataataatc
     2941 aaaagctgaa aagtaagtaa aaaatcaaat tgagttggag atacggtagt caacagacaa
     3001 gccaaaagtc ccccacctac accttctaaa aatgctgaag tgctaaaagc taaagttttt
     3061 atccaaaaag tatttattcc catagcactt gcagcatctt catcatctct tatagccttc
     3121 attgcacgac catatttaga ataaactata tttaaaatta aaataaccgc tacaatagca
     3181 ataccacctg tccaataaat cgtggaaaat tgtggaatat ctaccagtcc tcttgagcca
     3241 ttagtaatag aaggaaaatt aatagcagct attttaataa ttattccaaa gcctaaagtt
     3301 acaatagcca aataatcccc tctcacgcga aatacagcaa aagccaaaat cagggcaagt
     3361 aaagatgaac aaattccagc tacaattaaa gctagaataa aggaatttga atggatggct
     3421 aaaataaaag aactaggacc atctaaaaaa aactgatcat ttttcgcatc agcacttaaa
     3481 agaactaaag cagccgcata agctccaatt gcaacaaatc cattgggttc tagtgaaaat
     3541 tgtccagtta caccattaat aaggttgtaa ctcacagcca aaataataaa aatagcaatt
     3601 tgattaacaa tgtttaatcc atagtcccca aaaatataag gagaaacgaa aataaaaaca
     3661 attgaagcaa ttaaaaagat taaatgtgaa accttaattc taaccatcat caaaacctac
     3721 tcttttcaaa atttatacct aaaattcccg taggtctaaa taacaatata aacaccaaaa
     3781 aaataaaagc aaatgcatct ttaaagcctg ataaatctgg aaaaaaagcc acaacaacaa
     3841 cttcagtaaa tcctataata agtccaccca aaactgcacc tactacagaa cctatacctc
     3901 ctaaaactgc agcagcaaaa gctttcaaac ctattaaagt tcccatagta ggttcaacag
     3961 agtaataatt tgcagcccaa aaaacacccc caactgctgc caaagctgaa cctagggcaa
     4021 aaactatagc aataatacga tttgcatcta tacccattaa atttactgtt tgtatatcaa
     4081 atgccaaagc acgaatagct ataccatact tgcttttata caaaatccat aacactgcta
     4141 ttaaaataac aaatgtaaga gcaggaacca ttaaagaacc ataagttgtt atcactccgc
     4201 caaaattaac actttcctca aaataacttg gcggtgtaaa agttctaggt gttgaagtaa
     4261 aaagcatatt aaaaagattt tgcaagaaaa aactaatacc aattgctgta atcaacaatg
     4321 aaattctagg agcctgtctt aaaggtttat aagcgattct atctgtagct attccaacac
     4381 aggcagcaaa aatcattgcc aaagacaaag ctcctagaaa aggaacattt agattagtca
     4441 tgcaaaaaag agctgcataa gcaccaacca tcataatatc gccgtgagca aaattaataa
     4501 gtcttaacac gccataaacc atagtatagc caacagcaat aagggcatac atactgccca
     4561 aactaagtcc attaacaagt tgttgtaaaa ataaagtaga atccataatc tttctatttt
     4621 tcctttaagg attgataata tctttataat tttgcttttg atttttaatt tctttaacca
     4681 ctacagaacg agttgcattt cctgtttgat caatactgat aacaccagaa acaccttgat
     4741 aatttttagt ttggtgaatt ttttcattga cacacttact agtaagattt tcaacgcaag
     4801 cattcatagc atttaacatt acaaaatacg catcagcccc catagctgaa aaatttggaa
     4861 cttcttttgt tcctttagct ttttcataaa cactgataaa ttctttgctt aattttgtag
     4921 ttggattatt agcatcaaaa ctatctgtga aaatataacc ctcgcttgca tctccagcta
     4981 aactaataaa agtttgatca gcaactccat ctgcagaacc cataggaata tttaaacctg
     5041 cgagttttga ttgtcttgca aataaagaag cttcactata ataaagcggt aaaaaaataa
     5101 attctggatt taaactttta acttgagcta caatagctct aaaatcttta tcacctgaat
     5161 taactcttaa aattctaaga atttgaccgc cattagactt gtactgtttt tcaaaagctt
     5221 ttgctaaacc taaggaatag tcagtgcttt gatctactac aataacagca cttttgtaat
     5281 taagttttga aaaaacatat tttgctaaag atgaaccttg aaaactgtcc ataaaacata
     5341 ctcgagaaga atatattttt ttatcaagca atctatcacc agttgcagca ggagcgatca
     5401 atggaatttt attatcttct gctacgcgca taacttgcaa tgtattagca gtaaccattt
     5461 cccctataag acctataact ttatcttgag aaactaaacg atttgctcca ctcgaagatt
     5521 ctaatttatc acctttagta tcaataatag caagagaaac cttatctcca ttacttaaag
     5581 ttgattgcat tgaatttgca agtttaatcc cttctagtgc actttgtcca tatgctgcag
     5641 tagctccgct aagtggtaaa acaactccta ttttgacttc cgcagcactt aaacttaaac
     5701 ttagaatact tgctaaaatt aaactttttt tcattctcta cctttatttt agtaattatg
     5761 gatttataat tgttttataa ttttgttttt gattttgaat ttctttaatc acaacagaac
     5821 gaatggcatt accgctttca tctatgctaa tcacaccacc aacagcttga aaatctttag
     5881 tttgatgaat tttactatta atacattcgc tgctaagatt atcaacgcaa gcattcatag
     5941 cattcaacat tacaaaatac gcatcagccc ccatagccga aaatgctgga agttcttttg
     6001 ttcctttaac tttctcataa gctgcaacaa aatcttttcc taattgtgta gatggattgt
     6061 tataatcaaa actatcagtg aaaattactc cattgacagc acttccgcca agatctataa
     6121 aagtttgatt attaacacca tctcctgctg ctaaaagttt atcaaaacca atttgtcttg
     6181 cttgtctcgc aattaaagca gcttcaggat gataaatagg catataaaca aaatcaggat
     6241 ttaaactctt aagttgcgaa accacagctc taaaatcttt atctcctgaa ttaataacaa
     6301 gtttttttat aattttccca ccattattct taaaagaatt ttcaaaagct cttgccaaac
     6361 ctaaagaata aacattgctt tgatctatga tgataacagc atttttaagt cctaaatcct
     6421 tagatacata agtggcaaat ttatctcctt gaaaattgtc tttaaaacaa actctacttg
     6481 catatttctt tttatctagc aatttatctc cagatgccac tggagctatt agaggaattt
     6541 ttttctcttc tgctatagaa atagcttgaa tggtatttgg agttgtagct tctccaataa
     6601 tcccaaggac tttatctgtt gctattaaac gattaactcc gtttgaagtt tcaagcttat
     6661 ctccttttgt atctattgtg ataagtttaa taacatctcc atttgaaagt tttggctgta
     6721 gcttattagc cagttcaatt ccgttaaaaa catcttgccc ataagctgcc acagttccag
     6781 ttaaaggtaa aactactcct atattaatat ccttagcata taagcaattt accatagtta
     6841 aaacacttaa agttaaagtt agttttttca tagcattcct tttaattata gtttttacat
     6901 tttattttag aaatatatta tgttttgttt tttgcgcagg ttcttcttca agaagatctt
     6961 ttacttgcaa atcaagcgca aaatttccac ctttaatata agcaataata ttatctatat
     7021 cctcgtggct taaatttcta gcataaaaag ccatttgaga agctgttgta gaactactac
     7081 tatcaagagt ataacctatc aaagctcctt taatatcctc aggagacata tcttttaaaa
     7141 ttctagatcc tataacactc ttttcagcat tatctccatg gcaagtattg catttatttt
     7201 gaaaatacaa agccttcgct ttttccatat catattgctt atttgcatca aaggtataag
     7261 taaaaaatga tttcaaatta ataccaaaaa gcgcaacaac aaatattgaa ctaataaaca
     7321 accatcgtat aatcatgatt ttccttattt tattgtaatt tccgtttgtg ttttattttg
     7381 atatctatgt gtttttttgt tgtatttttt ttctttttta atatcatagc gataacgaac
     7441 agtccctgaa acttctatat ctttaaagac ttcatctaaa ggagctgcaa aaacaaaatg
     7501 atttaaaatc ataccaatta aaaatatttt tttcattttt attctttaaa cacaaaaaac
     7561 gattatatca aaaaaagata atccttgtta atgaccacct ttatgtaaaa aataaagtcc
     7621 tacacaaaga gctaaaatcg atccagcaag aaaagccata tccacaggag tagcaaattt
     7681 catctgcaaa accctttgaa agaaatttac cactaagacc ataatgataa cttttgcaag
     7741 cttgtctttt aattgatcta agctatgcac ctctaaaacc ttgctttgtt ttgtttgttt
     7801 aaattcttct atttcgctga taaaaagctc ataaactcca aaagaaaaaa taaacaaaac
     7861 taaagccata agataaagat caacagctcc tataattaaa gccaccacat cctcatgcaa
     7921 atccacatta gaacctgcat caaaaaaata attataagta taaaatataa cttttaaaac
     7981 atcataactt gcaataaaaa acaatacaaa agctccaatt aaaccaaaaa ttacgggtaa
     8041 aattgtaaca atacgacttc taacaagtaa agattcaaat attttctcta acattttttt
     8101 ccttatttat tttttaattc taaccatttt tgcgcaatac gcacagcatt tgttgcagca
     8161 cctacacgaa tttgatctgc cacacaccaa agatggagta tttttttatc atacacatca
     8221 gcacgaattc ttcctacata agtttcatta gtatcgctag tcattaaagg catagggtat
     8281 tttttatttt taggatcatc tatgacaaca acacttggtg ctttttctaa aatttcttta
     8341 gcttttttta catctatttc tttttcaaaa tgcatagtaa tggcttcgct atgacttctt
     8401 aaaacaggca ctcttacaca agttgctgaa acttctaaat ttttatgtaa aattttttga
     8461 gtttcattga ccattttaag ttcttcttta gtgtaatcat tatccataaa aacatcaatt
     8521 tgtggaataa gattaagtgc taaagtataa ggaaaagttt gaggttcaaa ttcatcaagt
     8581 ttaaaagcaa aaaaactttg catggcttca accaattctt gcattccttc ttttcctgct
     8641 ccacttgcag cctgataggt acttacatca acacgcttta aattaaatgc atcatttaaa
     8701 ggttttaaaa cttgtaccat ttgtatagta gaacaatttg gatttgcaat aatccctgtt
     8761 tttttccaat ctttaatatc ctcaggattg cattcaggaa ccaccaaagg aacatctttt
     8821 tccattctaa aatgacttgt attatcaatt acaactgcac ccgattctac tgcaaattta
     8881 gcatattttt cactcacact tccacctgcg ctaaaaaaag caatatcaat aggattttct
     8941 ttaaatacat tttcagtaag ttctttgact ttataagctt tgcctttaaa ttctacttca
     9001 ctacctacac tttttgcact tgctaaaggt aaaatacttt ccactggaaa atcaagttca
     9061 tctaaaacat ttaaaagctc ttccccaacc gcaccagtag cacccacaat ggctattttt
     9121 tgtttttttg acattaccta tcctttattt gatatttttt aattttttca tttaaaattt
     9181 ttatatccat acctaaaatt tgagaagctt gatccttgtc ataatctaca cttaaaagaa
     9241 cttcacaaat caattctttc tctaaattct ttacatcttt ttttatactt ctagcttcta
     9301 agaacaaatc ttcacttgaa atttcatcat tttcacttaa aatacaagct ctttgtacaa
     9361 cggatattaa ttctctaata ttaccaggaa aatcatattc aagtaaagca tttttagctt
     9421 cttggctgag ctgtttttcc ttaaaatcat attctttaca agtatcttct aaaacctttt
     9481 gagctatacc taaaatttct tctttgcgct ctcttaaagg cgggatatta ataggaacag
     9541 tgtttaaacg ataatataaa tctgaacgaa attcgccatt ttttattttt tcatctaaat
     9601 ttgcattagt tgcactgata attcttacat ctattttgat gcttttcgta cttccaagtc
     9661 gcgtaatttc tttttcttgc aaagctctta aaagtttggc ttgaatttca taaggcattt
     9721 cgccaatttc atctaaaaac aaagtaccct cattagccat ttcaaaaagc cctattttag
     9781 ttgcattagc atcggtaaaa gcaccttttt caaaaccaaa aagctcactt tcaatcaaat
     9841 ttgcaggaat agctgccata ttaatagcaa caaaaggctt attagagcgt ttagaatggg
     9901 tgtgaatata acgagaaaat acctcttttc ctactccact ttctccaaaa aacattacag
     9961 aggcatcagt tttagccgct ttttgactta aatttaatgt tttttctaaa ttaggagaag
    10021 ttgaaaaaaa atctttattt tcttcttttt tttcattttt tttgcttttt ttatcggctg
    10081 ttttttctct tatgatttta gcacgcttaa tagcctcgac taaagtatca acatcaaaag
    10141 gcttggttaa aaaatctttt actcccaaac gaaccgcttc tatagcacga cttaaagtag
    10201 catttcctgt cataataata aaatcatatt tattttcaca ggctttaaca aattctatg
//
LOCUS       DAEBKH010000050        10170 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.050, whole genome shotgun sequence.
ACCESSION   DAEBKH010000050 DAEBKH010000000
VERSION     DAEBKH010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10170)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10170)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10170
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.050"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..571
                     /locus_tag="KIL20_000875"
     CDS             <1..571
                     /locus_tag="KIL20_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HBD2720915.1"
                     /translation="QNIKIFNINDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYE
                     LANDGLKIQDFSELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDALKI
                     NLYKFVFTPFFAPFLMLIMYYFFPVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSE
                     NSVIASEIGIVVPIIILGCLSAYMYYKHR"
     gene            615..1823
                     /gene="lysA"
                     /locus_tag="KIL20_000876"
     CDS             615..1823
                     /gene="lysA"
                     /locus_tag="KIL20_000876"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HBD2720916.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYAKNSSFLEPVGVHFHIGSQLLDISPIHEAAGIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYEKDECEPDLYNYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQAQESLCDVVGGICESGDFFA
                     KARSLPSTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFENQ
                     IALEEKFLKA"
     gene            1825..2592
                     /locus_tag="KIL20_000877"
     CDS             1825..2592
                     /locus_tag="KIL20_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HBD2720917.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYVIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKYLLKPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAVLVASYDDFKFKDFASMIEFARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRKQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKELKCQI"
     gene            2580..3653
                     /gene="pheA"
                     /locus_tag="KIL20_000878"
     CDS             2580..3653
                     /gene="pheA"
                     /locus_tag="KIL20_000878"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HBD2720918.1"
                     /translation="MPNLEEFRNKIDTVDDKILELLNERMTYVKSIGELKQSSGGTIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSKIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            3643..4737
                     /locus_tag="KIL20_000879"
     CDS             3643..4737
                     /locus_tag="KIL20_000879"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HBD2720919.1"
                     /translation="MKFNEFLNHLSNYEPGKDIEVIAKEYGVKEVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHAKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHDLNEFKKLYEAHKDEIKLIFLCL
                     PNNPLGECLDASEVTKFIKGVDEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIINAFYKLRAPFNVSNLALKAAVAAIDDDEFTK
                     KTLENNFSQMQLYKEFAKKHNIKIIDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            4789..6471
                     /gene="fliF"
                     /locus_tag="KIL20_000880"
     CDS             4789..6471
                     /gene="fliF"
                     /locus_tag="KIL20_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HBD2720920.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            6471..7499
                     /gene="fliG"
                     /locus_tag="KIL20_000881"
     CDS             6471..7499
                     /gene="fliG"
                     /locus_tag="KIL20_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HBD2720921.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            7507..8337
                     /gene="fliH"
                     /locus_tag="KIL20_000882"
     CDS             7507..8337
                     /gene="fliH"
                     /locus_tag="KIL20_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HBD2720922.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENANISLNDEKAVEENQAIAPTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFAKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            8330..>10170
                     /locus_tag="KIL20_000883"
     CDS             8330..>10170
                     /locus_tag="KIL20_000883"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HBD2720923.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFACVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHAQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDAKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIAFRYPRGSFILDKEFNPCEIKLGKAQWLVKNNSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDVNSLLTKVLKF"
BASE COUNT         3624 a         1260 c         1999 g         3287 t
ORIGIN      
        1 tcaaaatata aaaattttta atattaatga tttaaattta agctcttttg taagtgctaa
       61 aaatgcccat tttgaaggtg aaagttggat tttgcgagat ggtaatatta cattattacc
      121 taaaaattat gaacttgcta atgatggttt aaagatacaa gatttctccg agcttaaatc
      181 acttgagggt tttaaaccaa agattataga aggggttgct agtaatagtg attattcaat
      241 atctgacgca cttgaaagtt ttgagctttt taaggcgcaa aatgtcaata cagatgctct
      301 taaaatcaat ctttataaat ttgtttttac tccttttttt gcaccatttt taatgcttat
      361 tatgtattat ttttttcctg taatagcaag attttttaat cttgcttttg taacttttat
      421 agcttttgta gtgactttga tgatttgggg agtcttgttt ttgcttacta gattaagcga
      481 aaatagtgtg attgcaagtg aaattggcat tgtagtgcct attataattt tgggttgttt
      541 aagtgcttat atgtattata agcatcgata aattaagctt tgtgtagtaa aattataaaa
      601 attaaaggtt aaatatggat tataaacaat taaagcaaga atttaatact cctttttata
      661 tttacaattt tgatttcata aaagagcgtt ttttaaatct caaagaggct tttaaggcta
      721 gaaaatctca aattttttac gctgtaaaag ccaattcaaa tttaagtttg ttgcaaatgc
      781 ttgcaaattt agatagtgga tttgattgtg taagtatagg cgaggtaaag cgtgccttaa
      841 aagcaggagc aaaagcttat aagattattt ttagtggagt aggaaaaacc aaagaagagt
      901 taagacaagc tttagaatat gatattttat atattaacct tgaaagcgaa gctgaaatga
      961 tgcttttaga aagtgtggct aaagaactta atctaaaggc aagaatcagt attcgtgtta
     1021 atccaaatgt tgatgcaaaa actcatcctt atatttctac aggattaaat gaaaataaat
     1081 ttggtgttga aattgatata gcaagaaaaa tgtatcttta tgcaaaaaat tcatcttttt
     1141 tagagcctgt tggagtgcat tttcatatag gttcgcaact tttagatatt tctcctattc
     1201 atgaagcagc aggcattgtt gcaaaacttg taagagagtt aaaagccttg caaatcgatc
     1261 ttaaattttt tgatataggc ggtggcttgg gtgtggctta tgaaaaagat gagtgcgaac
     1321 ctgatcttta taattatgca caaggtatat tagcacaact tcatgggctt gatttaacca
     1381 taggaatgga gcctggaagg tatttagttg ctaaaagtgg agaatttgtt tgttcagtac
     1441 tttatgaaaa acaaaataaa accaagcgtt ttgttgtagt agatggagcg atgaatgatc
     1501 ttatacgccc aagtttatac gaggcttatc atgaaataat cttaccttat aatcaagctc
     1561 aagagagttt atgtgatgtt gtaggtggaa tttgtgagag tggagacttt tttgctaaag
     1621 caaggtcttt acctagcact caaagtggcg atataatggt tattaaaaat actggagctt
     1681 atggttttag tatgagtagt aactacaata ctcgtaataa agtttgcgaa ttagcccttg
     1741 aagaaggaca ggtaagattg atccgtcaaa gagaaaattt tgaaaatcaa atcgctttag
     1801 aagagaaatt tttaaaggct taaaatgttt tttttagatg ttcaagggac tttaatttct
     1861 gatcatgata agagtttaat ccatggcgct aaagaattga tcgatttttt aaatgcaaaa
     1921 aatcttcctt atgttatcat tactaacaat acaaaaaaac ttgatttttt agaaaaatta
     1981 cagcaaaaag gattggctat aaaagaaaat gcttatattg atccttttag cgttttaaaa
     2041 taccttttaa aaccttgtaa agttgcggct tttggtgcag atgagtttgt aaaaagtctt
     2101 gaaaatcttg gttttgaact cgattttgta aatcctagtg ctgtgcttgt agctagttat
     2161 gatgatttta aatttaaaga ttttgctagt atgatagaat ttgctagaag agaagttagg
     2221 tttatagcta tgcacgaaac tagcatttat aaaaaagatg gtaggcctta tcctggtgta
     2281 ggtagcatta tggctatgct taaaaatgct attgattttg aatacgaggt tgtgggtaag
     2341 cctagcattg ctttttataa agaagcttta aatttgataa gaaaacaaaa ttcaaaaatc
     2401 gattttgaag atattaaaat cattagtgat gattttagag gagacttgct taaggcaaaa
     2461 gaacttggca tgaaaacctt gctggtttta agcggaaaga taagcgacac aaaagggctt
     2521 gatacggatt tgcttgatgg agtttatcct agtgtttttg agtttttaaa ggagctaaaa
     2581 tgccaaattt agaagaattt agaaataaaa tcgatacggt tgatgataaa attttagaac
     2641 ttttaaatga aagaatgact tatgttaaaa gtataggcga gcttaaacaa agcagtgggg
     2701 gaactattta tcgtcccgag cgtgaaagag ccattatcaa tcgtttaaaa aatgccaatt
     2761 taggactttt ggatcaaaat gccatagagg caatctatca agaaattttt gcggtttcaa
     2821 gaaatttaga aatgcctcaa actatagctt atttagggcc tgagggaact tatactcatc
     2881 aagcagcaag aagtcgtttt ggtgcgatga gtcgttatat agccttggct aatatcgaag
     2941 atgtttttaa agagttaagc aacaaagaag caaaatacgg tgttgtgcct atagaaaata
     3001 atactgaagg tgcagtaggt attactttag attgtctagg taagtataat gagcttaaaa
     3061 tttttggtga aatttatatg gatattcatc attcttttgt ggggattaat gaaaatttaa
     3121 aagaaatcaa acgcatttat tcgcatccgc aaggttataa tcaatgtcgt aaatttttag
     3181 aaagtcatga acttagtgct atagaatttg ttccttcaaa atctacagct aatgcggctt
     3241 atttagcttc gcaagataaa tatgcggcag caatttgctc taaaatagcg gctaagcttt
     3301 ataatgtgcc tgtgcttttt gacaaaatag aagataatgc agccaataaa acaagatttt
     3361 taattttaag cgatattaaa aatcctaaaa tgccaaattg taaaacttct attttagcac
     3421 acacagcaca taaacctggt gggcttagtt ttttattaga gcagtttaaa aaagaaaata
     3481 tcaatcttac taagcttgaa tctcgtcctg taaaatcaaa agaattttta cacagttttt
     3541 acatagattt tgaagggcat attgatgatg aaaatgtaaa aaaagcttta aaagatatac
     3601 aagagattgt ttggcttgga tcttatttat caggagaaaa agatgaaatt taatgaattt
     3661 ttaaatcatt taagcaatta tgaacccgga aaagatatag aagttattgc caaagaatat
     3721 ggcgttaaag aagtgataaa attagcaagt aatgaaaatc cttttggtac gccaccaaaa
     3781 gctatagaat gcttaagaca aaatgcaaac aaagctcatc tttaccctga tgatagtatg
     3841 atagaactta aaagcacatt ggctcaaaaa tacaaagttc aaaatgaaaa tatcatcatt
     3901 ggtgcaggta gtgatcaagt gattgaattt gctatacatg ctaagttaaa ttctaaaaat
     3961 gcttttttac aagctggagt tacctttgct atgtatgaaa tttatgccaa acaatgcggt
     4021 gcaaagtgtt ataaaactca aagcattact catgatttaa atgagtttaa aaagctttat
     4081 gaagcacaca aagatgaaat taaactcatt ttcttgtgct taccaaataa tcctttaggc
     4141 gagtgtttgg atgcaagtga agtgaccaag tttattaaag gtgtggatga ggattgttta
     4201 gttgtgattg atgcagctta taatgaattt gcaagtttta aagatagcaa aaaacattta
     4261 gaaccttgtg aattgattaa agaatttgac aatgtacttt atttgggaac tttttctaaa
     4321 ctttatggat taggaggctt acgcattggt tatggtatag ctaatgctaa tattattaat
     4381 gcattttaca agcttcgtgc tccttttaat gtgagcaatc ttgctttaaa agcagcagtt
     4441 gcagcaatag atgatgatga atttactaaa aaaactttag aaaataattt ttctcaaatg
     4501 cagctttata aagaatttgc caaaaaacat aatatcaaaa tcattgatag ttatacaaat
     4561 ttcatcactt atttttttga tgaaaaaaat agtacagatt tgtctgaaaa attgcttaaa
     4621 aagggtataa taataagaaa tttaaaaagc tatggtttaa atgctatacg cattactata
     4681 ggaacatctt atgaaaatga aaaatttttt acagaatttg ataagatttt aagatagata
     4741 aatcaaataa aaatatgtaa aattcgctaa actaagggat gagaattaat ggattttaaa
     4801 aatatgcttc atcaaattgg gcaactttat caaaatttaa ctcgcaagca gcgtatagtg
     4861 attgctgcat ctattgtagt agtggttggg tttttggttt ttttagcttt atttcgtgga
     4921 agtggtagta atgcaaataa tggatatgca gttttagttg aaaatgtaag cccaagttct
     4981 tctgctgcaa ttgtagctaa acttgaacaa aataatattc cctataaatt agaaagtgaa
     5041 aataaaattt tagttccaca agatcaggtt tatcgtcaaa gaatgtttat tgcaagcgaa
     5101 ggtcttataa aagatagtcg cgtgggtttt gaagcttttg atactcaagc ttttggagct
     5161 acaaatgaag agcaaagggt aaaataccaa agagccatag aaggcgaact tgcaagaact
     5221 attgagactt tagaacctat tcgtagcgct gttgtacaca tagcatttcc taaagatagt
     5281 gtttttactg aaaggcaaat tccgcctaca gcttcagttg ttgttaatgt tcgcgaaggc
     5341 ttaaagctta ctagaaaaca aattgatggt ataaaaaata ttgtttcagc ggcagttcca
     5401 aaacttacta aagaaaatgt taagattagt gatcaaagtg gtgtgccttt agatgagcaa
     5461 gaagcatatg aagatgactt ggttcgtgcg caaattaaat ttaaaagtga tcaagaaaaa
     5521 gctttagaag ataagattat agaaaattta gctccttttg caggtggtat ggataaagta
     5581 aaagtgagtg taaatataga ttttgatttt tccaagcaag aatctcaaag tgaaatttat
     5641 gatccaaatc ctatagtgcg tagtgagcaa actttaaacg aggaaagaac aggtagaaaa
     5701 gatccagaaa ttcaaggtgt tccaggtgct gtttctaata taggtcctgt tgaaggactt
     5761 gacaataaag gtcaaattga cacttataaa aaaaatcaag ttactacaaa taatgaactt
     5821 tctaaaacta ttacaaatac caaaaaacaa tttgcaacag ttttacgcac ttcagcagct
     5881 gtcactatag atggaaaata tcaagatgtg gttgatgaaa atggggatgt gaaaagcgaa
     5941 tatgttccat tgactaaaga agagcttgca agtgttgaga gtatagttaa aaatactatt
     6001 aattttagcg ctactagagg cgatagtgtt gtagtgcaaa atttaccatt tcatcgtgag
     6061 tcgattagag ttgagagtaa agttaaaact ttttacaatc gttttgttga gccatttatt
     6121 ccaccagtta agtattttat tgcagcgatt ttacttttta ttttttacaa aaaagtcatt
     6181 gctccattta ctcaaaaaat gcttgaagat gtcgcagcgc aagaagaaat gcagcaaggt
     6241 ccaaatgctg ttttagatga tgctgaagat gctttggaga aatttaatgc agcaaggaaa
     6301 aaagttgaag aacaacttgg ttttggggat aattttaatg aagattctat tcaatatgag
     6361 gttttacttg aaaaattgcg tggtttagta agtgataaag gcgaggaaat tgcagcactt
     6421 ttacaaaact taattcaaaa tgatagtgaa tttggcgaaa aggatatgtg atgataaagc
     6481 taagtgaaga acaaaaaatg gtctatgatg atttatcgat gcctgagaag gtagcgatat
     6541 ttcttataca acttggcgaa gatgcaacaa cttctgtgtt ttcacatatg gaaattgatg
     6601 taattacaga aatttcacgt tatattgcta tggctaaaaa tgttgataga tccgtagcta
     6661 ctgcagtttt agaagaattt tacactctgc ttcaatcaaa tcaatatatt aaaagtggtg
     6721 gtttggaata tgctaaagaa atactttttc gtacttttgg gccagagatt gcaaataaaa
     6781 ttcttgaaaa actcactaaa agtatggaga ataatcaaaa ttttgcttat ttggcgcaaa
     6841 ttaaaccaca gcaacttgca gactttatta ccaaagagca cccacaaacc atcgctctta
     6901 ttttggcaca catggattct attcatgcgg cagaaacttt agagtatttt agtgatgaat
     6961 taagggctga ggtggttata agaatggcaa atcttggcga tatttctcca agtattatta
     7021 aaagagtttc tgcagtgcta gaaagcaagc ttgaaagtct tacctcttat aaggttgaag
     7081 tgggcggccc aagagcggta gcagaagtgc ttaatcgttt gggtcaaaaa gcaagcaaat
     7141 caaccattac ttatattgaa caaagtgatg aacgcttagc agagactatt aaagagctta
     7201 tgtttacttt cgatgatata caaaaactta gcactcaagc tataagagaa attttaaaag
     7261 tagctgataa gcgtgattta atgataggtt taaaaggtgc aagtgaagag ttaaagcaaa
     7321 aattcttagc caatatgtct acgcgtgcaa gcgaagcttt tcttgaagaa atgggttttt
     7381 tgggtgctgt gcgtgttaaa gatgttgaag atgcacaaag aaaggttgtt gaagtggtgc
     7441 aaaaacttgc agaacaaggt cttgttcaaa caggcgatgc ggatgaaatg atagagtagg
     7501 tgagagatgg ttaatcgtag caatgtaatt tctggtgggg cttctgatca gcatgttgtt
     7561 gaaggatatc gttttaaagt tatttcagaa tttgataatc atacaggtga aaaaaaacat
     7621 actcaaactc cagatgaaga aaatgctaat atatctttaa atgacgaaaa agcagttgaa
     7681 gaaaatcaag ctattgcccc tacgcaagct gttatggaaa ctcaaattcc aacatttcaa
     7741 ccaagttttg ttgaagattt gcttaaaaaa acagatgaaa tgtcaagcaa tattattaaa
     7801 cttcaaatgc aaatagaaag ccaagagaat gaatttaata accgcttaaa ttcagaactt
     7861 gaaaatgcta aagaaaaatt tgccaaagaa ggttatgaga aagcaaaaga agaatttcaa
     7921 aaggaattga gtgattttaa agataagtat ttaaaaagta tagccaaact cgataatgct
     7981 tgcgaaaatc ttgaaaattt catagaaaaa aatgagaaag aattagcaga tactgctata
     8041 gatatcgcta aagaagtaat cttaaaagag cttgaactaa attcaagtaa gatagcttat
     8101 gctttggcca aagatttaat cggcgagctt aagggtgcta gtgcaattga gcttaaggtt
     8161 aatgcagagg attatgagta tttaaaagag caatttgatc agaatgctca tattaaaata
     8221 agtcttgatg atgcaattag caaaggaagt gttgttatta taagtgacgc aggcaatata
     8281 gaatccaatc ttaactctcg tctaactaaa attaaaaaaa tggtgaataa tgagtaaaaa
     8341 atttgcccat actcaagaag agttagaaaa gctaagttta aaagaattag aaaatttagc
     8401 agcatctatg cgtgaaaaaa tcatacaagt tgtgagtaaa aatggtgggc atttaagttc
     8461 aaatttgggt gctgtagaac ttagtatagc aatgcatttg gtttttgatg caaaaaaaga
     8521 tccttttatt tttgatgtgt cgcatcagtc ttatacacac aagcttttaa gcggaaaaga
     8581 agaaatattt gatactttaa gacaaatcaa tggtttaagt ggttatacaa aacctagcga
     8641 gggagattat tttgtagcag ggcattctag cacctctatt tctttggcag taggtgcttg
     8701 taaggccatt gctttaaaag gtgaaaagcg tattcctgtt gctttgattg gagatggtgc
     8761 tttaagtgcg ggtatggcct atgaggcttt aaatgaattg ggtgattcta aatttgcttg
     8821 cgtaatactt ttaaatgata atgaaatgag tatttcaaaa ccaattggag caatttcaaa
     8881 gtatctttct caggctatgg caacgcagtt ttatcaaagt tttaaaaagc gtattgctaa
     8941 aatgttggat atattgcctg atagtgctac ttatatggcc aagcgttttg aagagagttt
     9001 taaacttatt actcctgggc ttttgtttga agaattaggg cttgaatata tagggcctat
     9061 tgatggacat aatttaggtg aaattatttc tgcattaaaa caagcaaaag ctatgcaaaa
     9121 gccttgtgtg atacatgctc aaaccataaa aggtaaaggc tatgctttag ctgaaggaaa
     9181 acatgctaaa tggcacgggg tgggagcttt tgatatagat agtggagaga gtgttaaaaa
     9241 aagtgatgct aaaaaatctg ctactgaaat tttttctaag aatttgcttg atttagcctc
     9301 aaaatatgaa aatattgttg gggttacagc ggctatgcca agtggaacag gtcttgataa
     9361 gcttatagaa aaatatccaa atcgtttttg ggatgtggct attgcagaac agcatgcagt
     9421 aacttctatg gccgctatgg caaaagaagg atttaaacct tttattgcaa tatatagcac
     9481 ctttttgcag cgtgcttatg atcaagtgat ccatgattgt gcgattatga atttaaatgt
     9541 ggtttttgct atggatagag cagggatagt aggcgaagat ggggagacgc atcaaggtgt
     9601 ttttgatctt agttttttag ctcctttgcc aaatttcact cttttagccc caagagatga
     9661 acaaatgatg caaaatataa tggagtatgc ttatttacat caaggaccta ttgcttttcg
     9721 ttatcctaga gggagtttta ttttggataa agaatttaat ccttgtgaga taaaacttgg
     9781 taaggcacaa tggcttgtaa aaaataatag tgaaattgct tttttaggtt atggacaagg
     9841 tgtggcaaaa gcgtggcaag tcttaagagc cttgcaagaa atgaataata atgctaattt
     9901 gattgattta atttttgcta aacctttaga tgaagagctt ttgtgtgagc ttgctaaaaa
     9961 aagtaaaatt tggtttattt ttagtgaaaa tgttaaaatt ggcggtatag aaagtttaat
    10021 taataatttt ttacaaaaat atgatttgca tgtaaaagtt gttagctttg aatatgaaga
    10081 caaatttatt gaacatggaa aaacaagtga ggtggaaaaa aatctagaaa aagatgtcaa
    10141 tagtttgttg acgaaagttt taaaatttta
//
LOCUS       DAEBKH010000051        10119 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.051, whole genome shotgun sequence.
ACCESSION   DAEBKH010000051 DAEBKH010000000
VERSION     DAEBKH010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10119
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.051"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..717
                     /locus_tag="KIL20_000884"
     CDS             <1..717
                     /locus_tag="KIL20_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HBD2720924.1"
                     /translation="DQNRNLLIKNLQDLLAKQEGFVYIEYFKTLSLNDFKTLSPDFNI
                     PLKALAYRADVRSKLNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEIL
                     SGNVKISLPFLDYGRVKQNIKISQFTYEQLLISYEQALQSAMNEFALNYKDYQSDTLL
                     LQNLQNINIKQELITKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTIN
                     SYYQITALSFNDENLEFLKY"
     gene            complement(720..1898)
                     /locus_tag="KIL20_000885"
     CDS             complement(720..1898)
                     /locus_tag="KIL20_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HBD2720925.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKTKGAKINLDTTLDKKNFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKDNNVFLDTIAINGAKSDLWLSWNQTVVKKELGLLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(1885..2895)
                     /locus_tag="KIL20_000886"
     CDS             complement(1885..2895)
                     /locus_tag="KIL20_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HBD2720926.1"
                     /translation="MSVVRFFFILIMVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQESKSTDENLSKIDKVLNTLENDENTS
                     HKETNLTLIQDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFIKNSNIKYLVVLLGANDPWDIKKGGNYHRFGSPS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKKEDLNKKIQVLNKIYSDEILKNKEIF
                     INTKLFFSVNDEYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            complement(2896..4272)
                     /locus_tag="KIL20_000887"
     CDS             complement(2896..4272)
                     /locus_tag="KIL20_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HBD2720927.1"
                     /translation="MTYFSLEFSILMIAFFAIYWTFKNDYKIQNILILIFSYIIYILI
                     NPYFALVLFIYTFFIHYFALLIFVRRKRYIFATCMAFIILNLCFFKYFPSIKGSVDEI
                     LNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSG
                     PIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNF
                     IQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPPNFNMPYLAKNLKDFWARWHI
                     SLSTFIRDYIYIPLGGNRKGIPRTVANILIAFILSGMWHGNTLAFIVWGLLHGIGIVF
                     IHLLALSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNFFQIPS
                     YNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGI
                     PDFIYSSF"
     gene            complement(4315..4818)
                     /gene="ctf"
                     /locus_tag="KIL20_000888"
     CDS             complement(4315..4818)
                     /gene="ctf"
                     /locus_tag="KIL20_000888"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HBD2720928.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            4998..5993
                     /locus_tag="KIL20_000889"
     CDS             4998..5993
                     /locus_tag="KIL20_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HBD2720929.1"
                     /translation="MKKILSLSVASLALCGALNAVDLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGVTDIVGMMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            6003..6917
                     /gene="pstC"
                     /locus_tag="KIL20_000890"
     CDS             6003..6917
                     /gene="pstC"
                     /locus_tag="KIL20_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HBD2720930.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            6914..8002
                     /gene="pstA"
                     /locus_tag="KIL20_000891"
     CDS             6914..8002
                     /gene="pstA"
                     /locus_tag="KIL20_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HBD2720931.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKTWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLVQKGEIELKFNSNFFLNGDSKSPENSGILSSVIGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAQAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            7999..8739
                     /locus_tag="KIL20_000892"
     CDS             7999..8739
                     /locus_tag="KIL20_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HBD2720932.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            8811..>10119
                     /locus_tag="KIL20_000893"
     CDS             8811..>10119
                     /locus_tag="KIL20_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720933.1"
                     /translation="MFETLLKLSEEPLKSKIKDLYFSKFNYVGAKIDFCITQNLGLLG
                     EINLLWAEAKQGKSELKKSFVQLVLTIGKYKFYTEQTPNLLCAFDGEKIAFLPFACLQ
                     EIFYQSDINFSVTPSNHTSEQFLKLLKELDSILNTAQIFYYEKNDEELKTFIKENLTS
                     ENISKIKIDKNNFVSIYHKWNKMVKDTISIDWNLAKKSGIIDADFYLADLLSSENETI
                     SQNLFAILKKDYYEFNKTKSDLGSIINERTSFKDNQKAHHEFWAIYERPPREEFWDYI
                     IKRRDLLVDQDVRERKGAFFTPRIWVDKACEYLSKTFGEDYEEGYYIWDLAGGTGNLL
                     ANFTNKKNIFCSTLDKADIDVIHERIKNGANLFENHVFQFDFLNDEFFDEVDDKGKII
                     QKSKLPLILQEILKDENKRKKLIIFINPPYAEAGNSSTMSGTGK"
BASE COUNT         3552 a         1363 c         1684 g         3520 t
ORIGIN      
        1 gatcaaaatc gtaatttact cataaaaaat ttacaagatt tattggcaaa gcaagaaggt
       61 tttgtttaca tagagtattt taaaacttta tctttaaatg attttaaaac cttaagtcct
      121 gattttaata tacctttaaa agctttagcg taccgtgcag atgtgagatc taaactcaat
      181 agcttaaaat cagcctttaa ggattattct tccatgcaaa aatctatttt gcctagtatt
      241 tctttaggtg gagcattaag cggaagtgat aaaaaaatcg atgatagttt taaatttgaa
      301 attttaagtg gcaatgttaa gatttcttta cctttcttag attatggtag agtaaagcaa
      361 aatatcaaaa tttcacaatt tacttatgag caacttttaa tttcttatga gcaagccttg
      421 caaagtgcga tgaatgaatt tgcattgaat tataaagatt atcaaagcga caccttgctt
      481 ttgcaaaatt tgcaaaatat taacattaaa caagagctta tcactaaggc gtattatgaa
      541 aaatatattt taggaaaaag tgaattaaaa gattatttgg atgcaaacaa tactttaaat
      601 tctacccagc aagaattttt aagagctaga tttaatcttt taaaaaccat taattcttac
      661 tatcaaatca cagctttaag ttttaatgat gaaaacttag aatttcttaa gtattaaatt
      721 taataatcaa tgatattttt taaatcctcg agtaactttt tagccatcag ctcatagcct
      781 tttatagtaa gatgtacatc attgagcgaa agcttttgtt ctatccattt gttttttccc
      841 ccactatctt gcataaactg atgcatatca aaaataagag ttttttcttc tttagcaact
      901 tcatataatg ctttgcgtat ggtaaaaaaa tcaggagcaa gcttgtagtt tttaccttgt
      961 ttttgaacta cagttggtgg agagattagc atgataacag cgtttttatt gtaagttttt
     1021 aaaatactaa tccatttttt taaattattt ttgaattttt gtttttcaaa ccctttaaag
     1081 agtgcatcat tagaaccata ggcaagaata attaaatcat tgtgtaaaag tcctagttct
     1141 ttttttacaa ctgtttgatt ccaagagagc cataaatcac ttttggcacc attgattgca
     1201 atggtatcta agaaaacatt attatcttta tttgtgatga aatatcctcc tagctcagca
     1261 tctttttgta aggctgaaat ttgcaaagga agatcaagtt ctagttcttt ataagaccat
     1321 ttgttaattt gtgtagttct taactcatag ctttggtttt ttgcatcttt gatgctaaaa
     1381 gcattggtat tttgcttggc tttaaataaa aatcctattt tgaaattttt tttatctagg
     1441 gttgtatcaa ggttgatttt tgcgccttta gtttttgctt tggctattat cccacctaat
     1501 ggaaaattat gtccagcatt agcaggattt cttgagttta aaatttcaaa gtttttataa
     1561 gaataaacaa gattaagatt ttgttgatat ttaggctgta aaggataggc aaaacctata
     1621 gagttagagc ggattaaata tcctcttatg acacgcggaa agaaatcagc cgccatatga
     1681 gaatctccat aaattctaat tcctatgttt tgattttttt ctaatttttt ttctagattt
     1741 ttaagatctt tttttaatac ataacttgtt aaagcagagt gatttttgtt ttgattgagt
     1801 atggaatcta ttgtgtcatt tgtatttaaa ttttgtgcat aagagctagt aaaaataata
     1861 aaaaacaata agataatttt aaatttattt actagcattt tcttccttaa gttttatgtg
     1921 ttctaataaa agtttagaca tttctcttgc gccacttgga gtaaaatgaa ccccatcatc
     1981 tgttcttact tttatacttc tattgttttc atcttttata taagctgagt attcatcatt
     2041 gacactaaaa aatagcttag tgttgataaa aatttcttta tttttaagaa tttcatcgct
     2101 gtaaatttta ttgagcactt gtattttttt gttcaaatct tcttttttta caggagggat
     2161 ttcaaaccaa aaaactttgg ctttatgttt tttagcgatt ttaatgattt catctacacg
     2221 acttgtgtaa atatctatcc aagaagggga gccaaaacga tggtaatttc ctcctttttt
     2281 aatatcccaa ggatcattag cgccaagaag aacaacaaga tatttaatat ttgagttttt
     2341 aataaaagct tcattggtgg cttttgacca gtcaaaatag gatttataag aaaggcctgt
     2401 attttgttta ctaagatcgg ttaccttaag atttaaattt cttaaatctc tatttaaggc
     2461 tattgcaaca ccttgcatta aagaatctcc gataaataaa aactcatctc cattttgtag
     2521 ctctaatttg gtattgtcga taaaactaat atttgcatct tggattaagg ttagatttgt
     2581 ttctttatga gaagtgtttt catcattttc taaagtgttt agaactttat ctattttact
     2641 taagttttca tctgttgatt tactttcttg atttgtagtt tcttcattgg tttgaggcaa
     2701 gggttcgttg cttaaaattg cacgaatttg ttctaattta attttgaagc cattggcttc
     2761 ttttaaaaga tcattatgag gatagaatgc aaaatgatat ttttgttcta tataagagct
     2821 aatgctctga ttcataacta caacaaccaa gccaagcacc ataatcaaaa tgaagaaaaa
     2881 tctaactaca ctcatctaaa aactcgaata aataaaatca ggaattccat ctggcataaa
     2941 agcaaaaacc aaaagtaaaa taaaagctat gataaaaggt tttagtaaaa atggagtaag
     3001 atttaaaatc ttaatgcaat attctttaaa attaataaat aaaggataga tcataaaaag
     3061 aaccccaaaa gcaaccaaca tatagatatc gttataagat ggaatttgga agaaattata
     3121 ataacaagct ttaaaatatt ctattgcatc ttctagattt ttgctataat aaaagaaaat
     3181 ccaagtaaaa catacaaatt gaaaggttaa aaatcttcct aaagctggaa ttttttgtaa
     3241 actaaatttg cttaaagcta gcaaatgtat aaaaactatg ccaataccat gcaataaacc
     3301 ccaaacaata aaagcaagtg tattgccatg ccacatacct gaaagtataa aagcgatgag
     3361 tatattagct acagtgcgtg gtattccttt tctattgccc cctaaaggta tatagatata
     3421 atctcttata aaggttgaaa gactgatatg ccatctagcc caaaaatctt ttaggttttt
     3481 tgcaagataa ggcatgttaa agttaggcgg aagggtaaaa cctaacatta aagcaaaagc
     3541 acaaactaaa tcaacatatc cgctaaaatc gcagtatatt tgaattgcat aggcgtaaat
     3601 tgcgcttaaa agttgtatga aattataaga ttgtggaaag tctaaaatac ttttagcata
     3661 aattccaagg taattggcta ttaaaacttt tttaactata ccaaaaacaa gcaagatgat
     3721 gattaaattt gcatgtttaa attcgcgttt ttgataggcc tgttcaaaga aaaaagaact
     3781 tcgcataatg ggccctgaaa gtagtgttgg aaaaaatgat aagaaggttg ctaaatttaa
     3841 aaaactttct aaacggcgtt tttgataaac ttctacaaga taagtaatag aagtaaaggt
     3901 ataaaaacta attcctattg gtaatactaa atcaatattt aaaaattcta aaccgaaaaa
     3961 atttaatatc tcatcaacac ttcctttgat actaggaaag tatttaaaaa aacataaatt
     4021 taaaataata aaagccatgc aagtagcgaa aatataacgc ttgcgacgca caaaaattag
     4081 caaggcaaaa tagtgtataa aaaaggtata tataaataaa actaaggcga aataaggatt
     4141 gattaaaata taaataatat aagagaaaat taaaattaaa atattttgta ttttgtaatc
     4201 atttttaaaa gtccaataaa tagcaaaaaa agctatcatt aaaatactaa attctagaga
     4261 aaaataagtc ataccttcaa tccaaagcga gatttgccca tagtagggca aagattattt
     4321 ttttctgctt aatgcaatat ttttgatgta ttgatcagct aaataaagtc catttccgtg
     4381 ttctccgatt aacttaatct tgtcaactat accgcggaaa agtgcttctt cttcgtgttg
     4441 ttcgcttaca taccattgta agaaattaaa agtagaatag tctttatgtg ttagcatgtg
     4501 ttcaactaaa gtattgattg attttgtgat aaattgctca tgttcatagg ttttttcaaa
     4561 aacatcaagt aaagatttga aattttgttc aggctgtttt acttcttgaa gctctacatg
     4621 agaatctgtt tcattaagat aagtgataag ctttttagca tgatcgcttt cttcgcttgc
     4681 atgtgcaaac aagaaggctc cagctccatc aagactgttt tcatagcacc aagaactcat
     4741 actaagatat aagtttgctg catacatttc tttgtttatt tgttcattga gtaattttac
     4801 aacttcttta gaaagcattc ttatctcctt attaaaattt aaaatgtttt ataatgatat
     4861 attatttttt taaaaacaag ctaaattttt tgatagttaa aaattatatt taagaaaaat
     4921 acaaaataaa aaatgtttcc aaaatgtttc caagtttttt taaacttcca ttactttttt
     4981 aaagttaagg agaaaaaatg aaaaaaattc tatctttaag tgtggcaagt cttgcacttt
     5041 gtggtgcttt aaatgcagta gatttaaaaa tcgcaggttc atcgactgtg tatcctttta
     5101 cttcttttgt agctgaagaa tatgcttcga tcaaaaatac aaaaactcct atagtagaga
     5161 gcttgggaac agggggtgga tttaaggtat tttgtgaagg aactactgat atttctaatg
     5221 cttcaagacc tatgaaatta agcgaatttg aaacttgcaa aaaagcaggg gtaactgata
     5281 tagtagggat gatgataggt tatgatggta tagttttagc tcaaaataaa accaatgctc
     5341 cattaaatat cacaaaaaaa gaacttttct tagcattggc aaaagaaatt ccacaaaatg
     5401 gaaaacttat accaaatcct tatacaaact ggaatcaaat caataaaaat ttaccaaatc
     5461 gtaaaattag tgtttatggt ccaccatcaa gttcaggaac aagagatact atagaagagc
     5521 ttgtaatgag tgatgtgtct aaaaaaattc ctgagtataa aggcgagtat aaaaccatac
     5581 gccaagatgg tgcttatatc ccaagtggtg aaaatgataa tctaatcgtt tcaaaactta
     5641 ctattgataa ggatgctttt ggaatttttg gttatagctt tttagtgagc aattcagaca
     5701 aaatcaatgc tgctaatata gatggtgtta cgccaagcga agaaagcatc gcagatgaaa
     5761 aatacgaact tgcaagaagt ttgtttattt atatcaatgc taagaaaaat ccaaaagaag
     5821 cctttgattt tgcaaaaatt tatatgagtg atgatttggc aaaaagtggt ggagagcttg
     5881 aaaaaatagg acttgttcct ttgagtgatg ataaattaaa agcttctcaa aaacacgtag
     5941 aagatagaaa aattttaaat gatgagcttg taaaagctgg aaaagttttt taaggaaaaa
     6001 ctttgttaaa agaaaaaata atcaaatttg cacttttttt atgtgctttt gtaagcgtga
     6061 tagtaagttt tgctatcatg cttacaattt taattgaagc tttaaaattc tttcaaaaag
     6121 aaagcgttgt taccttttta ttctcaagtc agtgggcagc tgatgcagct tttatgaatg
     6181 cagatggcac gagtaaacaa ggtgtttttg gggcgctatc gcttttttgg ggaacttttt
     6241 atatttcatt gattgctatg ctaacggctt tacctttagg ggttatgtgt gctatatatt
     6301 taggtgtttt tgctggcaaa aaatctaaaa attacttaaa acctatttta gaaatcattg
     6361 cagggattcc tactgttgtt tttggatttt ttgcggctat agttgtagcg ccttttatag
     6421 tgtggttttt ttctttattt ggcatacaag caagctttca aagtgcttta ggcgcaggtt
     6481 ttatcatggg gatcatgata gtacctatag tggcttcttt atctcaagat tgcattgaag
     6541 cagtaagcga gaaaaggatt aatggcgctt atgctttagg tatgacaaaa aaagaagtgg
     6601 tttttgccgt gattttacct gaggctattc ctggtatagt tgcagcttgt cttttaggac
     6661 tttcaagagc cttaggcgaa actatgatag tggtgatggc agcttctttg cgtccaaatt
     6721 taactttaaa ttttttagaa gatatgacaa cggtaacggt aaaaatcgta gaagctttaa
     6781 gtggagatca agcttttgat agttctttgg ctttaagtgc tttttcttta ggtttggtgc
     6841 tttttgtcat cactttaatc atcaatatgt ttagcgttta tcttatcaat cgctttcaca
     6901 aaaggaaaaa tttatgaaaa aactttttaa aaaaagacaa aaagcttcaa agtcttttaa
     6961 aagactttgt aaaatggggc tttatattaa tttaattttt ctttgtatct ttttaggaag
     7021 tgtagcttat cttggatttc ctgcttttaa gcaaacttat atttttgtag aggctaatag
     7081 aaattctcct gcttatgatc ttttatctcg cgcagaacaa agaaaaataa gaacaggaca
     7141 aatcactgaa aaaacttggc ttttggcaaa ttcagaagta gatcaatata tgaagcaaaa
     7201 atataatcgc cttagtgaaa aacaaagaac tttagtcgat gatcttgtgc aaaaaggcga
     7261 gatagagctt aaatttaata gcaatttctt tttaaatggg gactcaaaat ctcctgaaaa
     7321 ttcaggaatt ttatcttcag ttatagggac tttgcttgtt atgcttgttt gtatggttgt
     7381 gagtgttcct ataggcgttg cagcggcaat ttacttagaa gaatttgcac cacaaaatat
     7441 ccttacacat tttatagaag tgtgtattaa caaccttgca agtattccta gtatcttgtt
     7501 tggactttta ggacttggag tgtttatcaa tctttttgga atgcctcgtt caagtgcttt
     7561 agtgggtggg cttactttgg cgatcatgag tttgcctatt atcattgttt caaccaaagc
     7621 ggccttaaaa agtgtggata tcaatatgaa aaatgctgct tatgccttag gtatgacaaa
     7681 ggttcaaatg gtaaaaggta ttatgttacc tttggctatg cctatgattt taacaggttc
     7741 tattttaact ttagctcaag ctataggcga gactgcacct ttgatgatta tcggtatgat
     7801 agcatttatc cctgatgtag ctagttcgat ttttgatcca actagcgttt tacctgctca
     7861 aatttactca tggtcggcta tgccagagcg tgcattttta gaaagaacag cagcgggtat
     7921 tattgtgctt ttaggacttt tagtcgtgtt aaatcttagt gcaatattat taagaaaata
     7981 ttttcaagga aaattaaagt gatagcaaaa acaacaaatt taaatttatt ttatggaaaa
     8041 aaacaagctt tatttgatat caatatgcaa atagagcaaa acaaaattac tgcactcatc
     8101 ggtgcttcag gatgtggtaa atccactttt ttgcgttgtt ttaatagaat gaatgataaa
     8161 attgcaaaaa tcgatggttt agtggaaatt gaaggaaaag atgttaaaaa tcaagatgta
     8221 gtagccttgc gtaaaaatgt aggcatggtt tttcaacaac ctaatgtttt tgtaaaaagc
     8281 atttatgaaa acatctctta tgcaccaaaa cttcatggta tgattaaaaa caaagatgaa
     8341 gaagaagctt tggtggtgga ttgcttgcaa aaagtggggc tttttgaaga ggttaaagat
     8401 aaattaaagc aaaatgccct agctctttca ggcggacaac aacaacgcct ttgtatcgca
     8461 agagctttag cgatcaaacc taaacttttg cttttagatg agccaacttc tgcacttgat
     8521 cctataagtt caggcgtgat tgaagagctt ttaaaagaat taagtcataa tctttctatg
     8581 atcatggtta cgcataatat gcaacaaggc aaacgcgtag ctgattatac agcatttttt
     8641 catcttggag agcttataga atttggtgaa agtaaagaat tttttgaaaa tccaaaacaa
     8701 gaaaaaacca aggcttattt aagcggtgct tttgggtgag atttatacaa aaacaagtat
     8761 ctttgtatta aaattatatc cttaaaaaag aattttataa ggatatagtt ttgtttgaaa
     8821 cacttttaaa actaagcgaa gaacctttaa aaagcaagat taaggatttg tatttttcta
     8881 aatttaatta tgtaggtgct aagattgatt tttgtatcac tcaaaattta ggacttttag
     8941 gtgaaattaa tttgctttgg gctgaagcta aacaaggaaa aagtgagctt aaaaaatctt
     9001 ttgtacagct tgtgcttacc ataggaaaat ataaatttta tacagagcaa actccaaatt
     9061 tactttgtgc ttttgatgga gaaaagatag cttttttacc ctttgcttgt ttgcaagaaa
     9121 ttttttatca aagcgatata aactttagtg taacgcctag caatcataca agtgagcaat
     9181 ttttaaaact tctaaaagaa ttagatagta ttttaaatac agcacaaatt ttttattatg
     9241 aaaaaaatga tgaagaatta aaaactttca taaaagaaaa tcttacaagt gaaaatataa
     9301 gtaaaattaa aatcgataaa aacaattttg taagcattta tcataaatgg aataaaatgg
     9361 ttaaagatac tatcagtatt gattggaatt tggctaaaaa aagcgggatc atagatgctg
     9421 atttttattt ggctgatttg ctttcaagtg aaaatgaaac catcagtcaa aatttatttg
     9481 ccattcttaa aaaagattat tatgagttta ataaaacaaa aagtgattta ggctctatca
     9541 ttaacgaacg cacttctttt aaagataatc aaaaagctca tcatgaattt tgggcgattt
     9601 atgagcgtcc tccaagggaa gaattttggg attatattat aaaacgcaga gatttgcttg
     9661 tagatcaaga tgtaagagag cgaaaaggag cattttttac cccaagaatt tgggtggata
     9721 aggcttgcga gtatctttct aaaacttttg gggaggatta tgaagagggg tattatatat
     9781 gggatttagc gggtggaaca ggaaatttac tagcaaattt tacaaataaa aaaaatatct
     9841 tttgctctac tcttgataaa gccgatatag atgtgataca tgagcgtata aaaaatggtg
     9901 cgaatttgtt tgaaaatcat gtttttcaat ttgatttttt aaatgatgaa ttctttgatg
     9961 aagtggatga taagggtaaa atcatccaaa aatcaaaact acctttaatt ttgcaagaga
    10021 ttttaaagga tgaaaataaa cgcaaaaaat taataatctt tataaatcca ccttatgcag
    10081 aagctggaaa tagctctact atgtctggaa ccggaaaac
//
LOCUS       DAEBKH010000052         9979 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.052, whole genome shotgun sequence.
ACCESSION   DAEBKH010000052 DAEBKH010000000
VERSION     DAEBKH010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9979
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.052"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(140..745)
                     /locus_tag="KIL20_000894"
     CDS             complement(140..745)
                     /locus_tag="KIL20_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HBD2720934.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLNKEDLNSILEIARLSPSSLGLE
                     PWKFIVVQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     IQKRLDTYMPFLKSLNQEQKISYAREQAHIALASILYSANALNIASCTIGGFDKEKLN
                     SYLSLDIQKERSSLVVALGYCNDEKNPQKNRFSFDEVVKFI"
     gene            complement(745..1364)
                     /locus_tag="KIL20_000895"
                     /pseudo
     CDS             complement(745..1364)
                     /locus_tag="KIL20_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
     gene            complement(1429..1854)
                     /locus_tag="KIL20_000896"
     CDS             complement(1429..1854)
                     /locus_tag="KIL20_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HBD2720935.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKIQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVVDEALRGKGIGQAFLKKIQIWAKDQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            complement(1866..2954)
                     /locus_tag="KIL20_000897"
     CDS             complement(1866..2954)
                     /locus_tag="KIL20_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HBD2720936.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDK
                     DLPFLLENLLNQYDFITLFTSPLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIISYSNRIKHEWLGISESVLENNGEYSE
                     RCVYFMLKGIFKTANPDFALAISGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            3053..5806
                     /gene="ileS"
                     /locus_tag="KIL20_000898"
     CDS             3053..5806
                     /gene="ileS"
                     /locus_tag="KIL20_000898"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HBD2720937.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYEKMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDGGCYDETLRAKELLPSHLLEEFIGLHIFKANEKILELLGEKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYKAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLEV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLAPNLSYSVDEALEHTNVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            5800..5910
                     /locus_tag="KIL20_000899"
     CDS             5800..5910
                     /locus_tag="KIL20_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720938.1"
                     /translation="MLENPIPNSIIITTIAVVLAFSALAVFLIKKTKENK"
     gene            5907..7268
                     /gene="gatA"
                     /locus_tag="KIL20_000900"
     CDS             5907..7268
                     /gene="gatA"
                     /locus_tag="KIL20_000900"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HBD2720939.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASVIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASTNLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            7278..8735
                     /gene="guaB"
                     /locus_tag="KIL20_000901"
     CDS             7278..8735
                     /gene="guaB"
                     /locus_tag="KIL20_000901"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HBD2720940.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVDALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            8732..8905
                     /gene="xseB"
                     /locus_tag="KIL20_000902"
     CDS             8732..8905
                     /gene="xseB"
                     /locus_tag="KIL20_000902"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HBD2720941.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            8898..9674
                     /locus_tag="KIL20_000903"
     CDS             8898..9674
                     /locus_tag="KIL20_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HBD2720942.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGVNLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKILKNF"
     gene            9686..>9979
                     /locus_tag="KIL20_000904"
     CDS             9686..>9979
                     /locus_tag="KIL20_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HBD2720943.1"
                     /translation="MRKILLQIFIFSVLFIVTFTINRVLMQNSFIPTGLISDKNEIFL
                     MYLLGVFHDIRFLSAAFLPFLLCGFLSLIFSNIKINNKLVIYSKNFYFIFSSIY"
BASE COUNT         3490 a         1337 c         1829 g         3323 t
ORIGIN      
        1 attgggtaaa ttcataacaa gccttgtgaa attaaatgta aaattataat caaaattgta
       61 taaaatttaa gcaaagactt agtaaaaata caaaaaagaa tcagtttatt tttatttaaa
      121 ttttgcttaa aagcaaaatt taaataaatt ttacaacttc atcaaaacta aaacgatttt
      181 tttgaggatt tttttcatcg ttgcaatatc ctaaagccac caccaaactt gatctttctt
      241 tttgaatatc aagtgataaa taagaattaa gcttttcttt atcaaaacca cctatagtgc
      301 agcttgctat atttaaagca ttagcactgt aaagtatgct agctagagct atatgagctt
      361 gttctcttgc ataagatatt ttttgttctt gatttagaga ttttaaaaaa ggcatataag
      421 tatctaagcg tttttgaatt tctgtttcac tcatatctct ttttctaagt ttttcttcaa
      481 aataatccaa aaaatcaagt cttgaaatga tgataattaa tgcagcacaa tcttttacat
      541 gtttttgttg attgcaaatt ttagaaagtt cttcttttct tttctcatct tgcactacta
      601 taaatttcca aggttccagt cctaaggaac tggggcttaa tcttgctatt tctaaaatag
      661 aatttaaatc ctctttattg agtttttcat ttttaaaatt tctacaagaa tatcttgtgc
      721 taaaaatttc aagttctttt ttcattattt ttccttgtaa aattcgacga cttcattaaa
      781 atttaagcgt tgagtagaat attttggttc gtgggcttta tatcctaagg ataaaattac
      841 agcagtttca aaaggataag ttaaatgaag aaaattatca accctagctt tttcaaagcc
      901 acctatcata caagaatcaa tacctaagct cattgcagct agcgacattt gcatcatagc
      961 aagatagcat tgaagttgtg cgtaatgata gagttcatta tcattcattg cattggtttt
     1021 atgggtgtaa atttttaaaa ttttttgaaa attttcttcg ctagaacctg agaaacgacg
     1081 cacttgtttt tgtgcaaatt catctttgct ttgaagatct tttcttgcta gaaaaataat
     1141 attatgactc gcacttgcta cattttgttg attgtaacat agagttgaga gtttaagatt
     1201 gtgttctttt tgttctaata ctacaaattt ccaaggctca aatccatgtg agcttggggc
     1261 taagactcca ctttctaaga taaaatgcaa atccttttca ttgatttttt atcattaaaa
     1321 agtttacaag ctctgcgttt tgaaattagt tctttaaaat tcattttatt ccttaaaatc
     1381 aaaaaataat aatattaatt ataaaatgca aagcttaatc aaaaaatatt atagtttgat
     1441 atttttctta aaaacaaaac cggatttttc aaaacccatt ttttggatat aaaattcatg
     1501 agcttgtgtt ctaaaaaaac ttgaacttag ttctaattct tcatatcctt gatcttttgc
     1561 ccaaatttgg atttttttca aaaaagcttg acctatacct tttcctctta aagcttcatc
     1621 tacgacaaaa tcacaaatat aaagacaatg attatgataa agtacattaa agggcatgac
     1681 tccacaagct gctttgtagc ttccctcatt ttcataggca aaaagtttat aatgttgagt
     1741 ttgtgtagca agttggattt tgtctaaaaa atctttcaaa gataggttat ttcttaattg
     1801 ttttatcaag ggataaattt tttccaagtc ttcttttagc ttaatttctt tcatttttaa
     1861 atcccttaaa tttcaaaaat ctcaggtttt aattttaaaa gtaggcaaaa agttgccaaa
     1921 acagcttgtt cttgcataaa ttcacgatct ccatctaaat aaagcgtttc ttggataaaa
     1981 gttccatctc taaacattgc acctatataa atagtgcctg attttatttt tccctcatct
     2041 ttttcgccaa ctactccgct aatagctaag gcaaaatcag gattagctgt tttaaaaata
     2101 ccttttagca taaaataaac acaacgttca ctgtattcgc cattattttc taagacgctt
     2161 tcgctaattc caagccattc gtgtttgatg cggttggaat aacttataat agatccttca
     2221 aaaatttcac ttacacctga aattttggtt aaggtgcttg cacaaagtcc acctgtgcaa
     2281 ctttcagcaa aagaaatttt taattttttt tctaaaagtt tagagcttat aaaatgtata
     2341 ggatctttac ctaaaaatac cttttgtcca aaaagatttt ttacgctatt taaaaaacca
     2401 tcaagttttc caaaattagc gcaagtggcc ttaataagca caagattatc taaaagcttg
     2461 gttgatttta tacttatctc ataagatttt gttagggttt gcagtagcaa tatagcgctt
     2521 tcatcatcca tgccaaaaat gcaaaaatat gcaaaattta attttatatg cccaagaaga
     2581 ttgggtaatt tttcgcttgg atttatttta acgacattga tttttgaatt tgaaaaatta
     2641 cacacaaagc tatttttact aaattctgct ttatctggaa ccaaggtatc atcttttaag
     2701 ataagattat catcatttaa agttgctaaa attttagcaa cagtcgcata atgcaaaggg
     2761 cttgtaaata aagtgataaa atcatactga tttaagagat tttcaagcaa aaagggtaaa
     2821 tctttatcgg ttttattttg tatgcgaatt tcgttgattt ctttaaattt ttcttcataa
     2881 gttctataaa tataattttt gaatttttcg tttatagtaa gctcatctcc tataagataa
     2941 agcaaatgtt tcataaattt tccttttttt cttataatta tagccaaaaa caaagtagaa
     3001 attaaagcta atttgagtag aatttaagat tattaaaaat taggtggaaa aaatggacta
     3061 caaagaaact ctacttttgc ccagcactac ttttgctatg cgggcgaatt tagcggaact
     3121 tgaaccgcaa agatttaaaa aatggtttga gcaaaattat gcttatgaaa aaatgaaaga
     3181 aaatcgcaaa aatgcgaaaa aaagttttac cttacacgat ggcccccctt atgctaacgg
     3241 acatatccat ataggacatg ctttaaataa aattttaaaa gaaactatta tcaaaacgca
     3301 ttattttaaa ggtgaaagtg tgcgttttac tccagggtgg gattgtcatg gtttacctat
     3361 agaacaacaa gtagaagtaa agcttggaga aaagaaaaaa agcttaagca agaaagaaat
     3421 tcgtgagttt tgcagacaac atgcgagtga atttgtagat atccaaagag aagaatttaa
     3481 aaatttaggc attattgcgg attgggataa gccttatttg actatgaaat ttgagtttga
     3541 agcagcgatt tatagaactt tatgcgagat tgctaaaaaa ggcttacttt gtgagcgttc
     3601 taaacctgtt ttttggagtt gggcggcaaa gtcagcttta gcggaagctg aagtagagta
     3661 tcaagataaa gaagattatt ctatctttgt ggcttttgat ttagatgtaa aagcttgcga
     3721 aaaattaggc gtttcaaaag caagcgcagt gatatggaca actacgcctt ggactttggt
     3781 ggctaatcaa gctatagctt taaatcctaa tgaaaattat gtgatcacta aagaaggttt
     3841 gatttttgca agtgctttac ttaaaagtat ggtagaaaaa ggacttacaa gtggagaaat
     3901 tcaaaaagaa ctcaacgcaa aagaatttga aaaacttgaa gctatcaatc ctttaaatgg
     3961 aagaaaatct gttttaatca tgggtgagca tgtattgatg gatggtggaa gtgggcttgt
     4021 gcatactgca ccaggacatg gcgaagatga ttactatgct tgtttgaaat acggtattga
     4081 agttttaatg cctgttgatg atggtggatg ttatgatgaa actttaagag ctaaagagct
     4141 tttgccttct catttgcttg aagagtttat aggtcttcat atttttaagg ccaatgaaaa
     4201 aattttagaa cttttaggcg aaaaactttt acattcttct aaatttatac actcttatcc
     4261 attttgttgg agaacgcata agcctgtgat ttatagagct actaaacaat ggtttatttt
     4321 aatggatgag ccaaaacttc aaggaaaaac tttaagagag tgtgcaaaag aacaactttt
     4381 aaaaacaacc ttttatccgc aaagtggggt aaaaagaata ggttctatgg tggaaaatcg
     4441 cccagattgg tgtatttcaa gacaaaggga ctggggaacg cctatagcct tttttagaga
     4501 taaaaacact aaagaagtca tttttgatga tgagcttttt gactttgtag cggctatttt
     4561 tgaaaaacac ggcgctgatg cgtggtggga gtttgaaatc aaagatttaa ttcctacaaa
     4621 ttcaaaatac aaagctgaaa atttagaaaa agtatatgat atcttagatg tttggtttga
     4681 tagcggaagt acttttaatg cagttttaaa tagcggactt tatgacgcag gagaaaaaag
     4741 agcaagtatg tatttagaag gaagcgatca gcatcgtggt tggtttcaaa gctctttgct
     4801 tgtaggtaca gcgatcaatg aaagcgcacc ttatgaaagc attttaactc atggttttac
     4861 caccgatgaa aaagggcaaa aaatgtctaa atctaaaggc aatgtgatcg ctcctgaata
     4921 tgtagcaaaa acctatggag ttgaaatttt aagactttgg atacttttaa gtgattattc
     4981 aagtgattta aaaatttcag acaatatctt aaaacaagtg ggtgaacaat accgcaaaat
     5041 aagaaacact ataagatttt tacttgctaa taccaatgat ttaaaagatt tagaagttaa
     5101 agaatttagt tttattgata aatggatatt aagtcgtgca accaaagttt ttaaagcaag
     5161 taaagaggca ttttttgctt atgaatttgc taaaggtttt agtttgcttt taaatttttt
     5221 aagtgcggat ttaagtggga tttatcttga tatcagtaaa gataggcttt attgcgatag
     5281 tgaaaatgcc caaagaagaa aatccgctca agtggctatg gctttgatag caaaagagct
     5341 tttaaattta cttgctccaa atttaagcta tagtgtagat gaggctttag aacatactaa
     5401 tgttttaatc aaaggcgatg caaaagatgt atttgatcta agtttaactc aggattttga
     5461 ttatgatttt ggtatagatg atacattttt aatgagtgct agagagaaat tttttgaaca
     5521 gattgatata cttaaaaaag ataaaatcat taaatctact ttggaattaa atttaaacat
     5581 cagttttaat aaattcccaa atgaggaatt agccgattgg tttatggtaa gtcaaatcag
     5641 caatgaaaat gaagaaattt tggctgaatt tgaagtagag aatgagaaat ttaaaatcac
     5701 caaagcttca ctttgtaaat gcccaagatg ttggaaactt caaagtaaag atgaagaaac
     5761 accttgttta agatgtgaag aagttttaaa agggattcaa tgctagaaaa tcctattcca
     5821 aatagcatta tcatcacaac tatagcggtg gttttggctt ttagtgcttt agcagtattt
     5881 ttgatcaaaa aaacaaagga aaataaatga taactttaaa agaagcttta aaatactcca
     5941 aagaagaact tgaaaattta aaaaaagaac tcaatgaaaa agcaaaaaaa gaaaaaaaaa
     6001 taggtgctta tatcgaacaa tttttagata aagacttaag tgtttcaggt gaaggtgtgc
     6061 ctgtagctat aaaagataat atcagcgtaa agggctggga gcttactagt gcgagtaaga
     6121 ttttacaagg ttatatcgct ccttatgatg caagtgtgat tgttaattta aaagctaatg
     6181 gtttttctcc ttttgggcgt tgcaatatgg atgaatttgc tatgggaagt tcaacagcga
     6241 gttcttatta tggcaaaact ttaaatcctt taaattttga gcgtgtgcca ggtggttcaa
     6301 gtggtggaag tgctgctgcg gtagcgggtg gcttggcttt ggcaagtttg ggttctgata
     6361 caggaggatc tgtacgtcag cctgcagctt tttgtggttg cgtaggattt aaaccgagtt
     6421 atggaagagt gagtcgctat ggcttagctt cttattcttc aagtttggat caaattgggg
     6481 ttttaacgca aaatgtagaa gatgcggcaa ttttatatga tgcgatcgca ggatatgata
     6541 aaatggatag cacgagtgca aatatcgagt ttatcaaaac cgctccaaat ttaaatgcaa
     6601 ataaaaaatt aaaaattgca gtgattgaaa attatgtcaa tgatgcagat agtgaagtaa
     6661 aaaacgcact tttaaaaacc atagatatgt taaaagctaa tggacatgag attgtatata
     6721 aaaatttgct tgattctaag tttgatattg cggcgtatta tatcatcgca acagctgaag
     6781 caagtacaaa tttaagtcgt tatgatgggg tgcgttatgg caagcgttct gaaaatatcc
     6841 aaaatttaaa agaaatgtat gtaaatacac gcagcgaagg ttttggagaa gaagtaaaaa
     6901 gaagaatttt gttaggaact tttgttttaa gcagtggata ttatgatgcg tattatatta
     6961 aagcacaaaa agctagagct tttattaagg caaaatatga agaaattttg caagattgtg
     7021 atcttatttt tatgcctgta actcctacaa cggcttttaa atttgatact caaaaaagcc
     7081 ctatgcaaac ttatttagaa gatgtttata ctatctctgt aaatttagca ggacttggag
     7141 gcattagtgt gcctgttgca aaagataaag aagggcttaa tatatcagca caactgattt
     7201 gcaaagctta tgatgaacaa accttgttag atggggcttt aagtttagaa caaatgatta
     7261 aacattaagg atgaaagatg aaaattgtaa aaagagcttt aacttttgaa gatgtattat
     7321 tgcgtcctgg gtattctgaa gttctaccta aggaagtaaa aattcacact aaactaacaa
     7381 aaaatatcac tttaaatatg cctttaatct ctgcagctat ggatacagtt accgaacaca
     7441 gagctgctat catgatggca agacttggag gacttggagt gattcataaa aatatggata
     7501 tagcctcgca ggttagagaa gtaaaaagag tgaaaaaaag cgaaagcggg gtgattatcg
     7561 atcctatttt tgtaagtcct aaggcaagtg ttgcggaggc tttagaaatt atggcagagt
     7621 atagaatttc aggtgttcct gtagtagatg aagataagaa actaataggc atactcacca
     7681 atcgtgattt aagatttgag agtgattttt caaatttggt tgaaaatgtt atgactaaaa
     7741 tgcctttaat cactgctcca aagggttgta ctttagatga tgcggaaaaa attttcagta
     7801 ccaacaaagt agaaaaactt cctatagtgg atgaacaagg acgcttggaa ggacttatca
     7861 ctataaaaga tcttaaaaaa cgcaaagaat atcctgatgc caataaagat aattttggaa
     7921 gattacgcgt gggtgcggct ataggagtag ggcaaatgga tcgtgtggat gctttagttg
     7981 aagcaggcgt tgatgttgtt gtgcttgatt ctgcgcatgg gcattctaag ggtattattg
     8041 atacagtaaa agcaattaag gctaaatatc caaatttaga tcttatcgca ggaaatatcg
     8101 ccactgcagc tgcagcaaaa gcactttgtg aagcaggagt agatgcggtt aaagtaggta
     8161 ttgggccagg aagtatttgt actacacgta ttgtttcagg tgtgggcgtg cctcaaattt
     8221 cagccattga tgaatgcgta gaagaagcaa ataaatttgg cgttcctgtg atagccgatg
     8281 gcgggatcaa atattcaggt gatatcgcaa aagctttagc tgtgggtgcg agttctgtta
     8341 tgataggatc tcttttagct ggaacagatg aaagtccagg agagcttttt acttatcaag
     8401 gaagacaata taagtcttat cgtggtatgg gctcacttgg tgctatgcaa aagggaagtt
     8461 cggatagata ttttcagcaa ggtactgctc aagataaact cgttcctgaa ggtatagaag
     8521 ggcgtgttcc ttatgtggga agtataagaa gcgtggtgca tcaactttta ggaggtttgc
     8581 gttcttctat gggttatgtt ggggctaaag atatagaaga ttttcaaaaa agagccgaat
     8641 ttgttgaaat taccactgca ggacttaaag aaagtcacgt gcatgatgtt actatcactc
     8701 atgaagcacc aaactacaag gttaatcatc aatgagtttt gaagaaaatt taaaacacgc
     8761 taatgaatct ttggaaaaat taaataatca agagcttgcc ttagatgaaa gtgtaaaaat
     8821 ttataaagaa ggtttagaga gtatcaaaaa agcaagactt gagcttgaaa aagcaaaatt
     8881 agaagtggag caaattgatg agtaaaatag cagctttaca gtttccaact ttagctttaa
     8941 gtgaatcaag gcttgattat tatcttaaag cttcaaaaga caatggagta aatttagtag
     9001 ttttgggaga atatgtgatc aacagttttt ttacagaact tttgcatatg ccaaaaaata
     9061 tgataaaaga acaaagcgaa gctaaaaaag aaagcttgat taaacttgct aaaaaatacg
     9121 aattagaaat catcgctcct tatgtaagcg ttgaagctaa aagttataaa aaactttgct
     9181 taaaagttac tccaaatggt gtgaaaagtt atgaacagca aattttaatg ccttatgaac
     9241 attggaatga agaaaaattt ttcagcaaca aaactccatc agaattaaaa atttttactt
     9301 ttaattatga aaaattaaaa tgtgctttgc tttttggttt tgagacacat tttgatattt
     9361 tttggcaaca gattatggcg aaaaaaattg atttggttat cgttcctagt gcttgtacct
     9421 ttgaaagcaa acaaagatgg gaagaacttt taaaaacaag agctttttta aattctacaa
     9481 gcattttaag agtaaatcgc ataggcaaaa caaaagatga gtggaatttt tacggcgata
     9541 ctttgtttat taatgctttt ggtgagatag aaagtaaatt gggttctgaa gaagaaatgc
     9601 ttattataga gcctaaaaaa agtgatgaag caagaaaact ttggggtttt gataaaattc
     9661 ttaagaattt ttaaagaagg tgaatatgag aaaaatttta cttcaaattt ttatttttag
     9721 tgtattattt atagtaactt ttaccattaa tcgtgtttta atgcaaaatt cttttatccc
     9781 tactggttta attagtgata aaaatgaaat ctttttaatg tatcttttag gtgtttttca
     9841 tgatataaga tttttaagcg cagcgttttt accattcttg ctttgtggtt ttttaagttt
     9901 aattttttct aatataaaaa taaataataa gttagtaata tatagtaaaa atttttattt
     9961 cattttttca agcatttat
//
LOCUS       DAEBKH010000053         9686 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.053, whole genome shotgun sequence.
ACCESSION   DAEBKH010000053 DAEBKH010000000
VERSION     DAEBKH010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9686
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.053"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(1..1831)
                     /locus_tag="KIL20_000905"
                     /pseudo
     CDS             complement(1..1831)
                     /locus_tag="KIL20_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
     gene            complement(1835..3124)
                     /locus_tag="KIL20_000906"
     CDS             complement(1835..3124)
                     /locus_tag="KIL20_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HBD2720944.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKDFAKDTRADFIILNNDMKISSVKNPDFFSNLKEGEILN
                     FNSKKILTKSFIYKGYKYIIIVYPRFLDLELFWTKIAIGFGVCLLFVFILMLLLGRRI
                     EKNFNKILDFLDSIGDHKVVILEKGMFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKI
                     TLKNTQLASVISAISHELKNPLSVIDLSLEMLKDEKLEDKKLKKELLEKISRQSIKLN
                     ALTHKLNFVFNLNSEALQMQEFDLFFLCEKITKNPGFERVVLQGKSTKVKADEFLIEQ
                     VIINLLSNALKYSQKEVILTARDQKIIVQDFGKGIEEDKIKLITKKFYKIDAKSDNSF
                     GLGLFLVKKILNIHKSYLEISSTLGYGSSFSFKLSQG"
     gene            complement(3118..3780)
                     /locus_tag="KIL20_000907"
     CDS             complement(3118..3780)
                     /locus_tag="KIL20_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HBD2720945.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLVDFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLANYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGVGYK
                     LC"
     gene            complement(3767..5350)
                     /locus_tag="KIL20_000908"
     CDS             complement(3767..5350)
                     /locus_tag="KIL20_000908"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HBD2720946.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKVPKDELMQMLSD
                     VEVAITRSSTDVDINFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            complement(5347..5835)
                     /locus_tag="KIL20_000909"
     CDS             complement(5347..5835)
                     /locus_tag="KIL20_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720947.1"
                     /translation="MKKYITISILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGDSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            complement(5835..7505)
                     /locus_tag="KIL20_000910"
     CDS             complement(5835..7505)
                     /locus_tag="KIL20_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HBD2720948.1"
                     /translation="MSEVNKKVQGGVDDYLEEEDFGQLLEAFDKSREEATTEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQDDNSKLLFNVGDSIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSTKELSSSPV
                     QEYAKIHKVGDIVKGAIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRMKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            complement(7637..8470)
                     /locus_tag="KIL20_000911"
     CDS             complement(7637..8470)
                     /locus_tag="KIL20_000911"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HBD2720949.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIENFKI
                     N"
     gene            complement(8460..>9686)
                     /gene="aroA"
                     /locus_tag="KIL20_000912"
     CDS             complement(8460..>9686)
                     /gene="aroA"
                     /locus_tag="KIL20_000912"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HBD2720950.1"
                     /translation="KSISHRFAIFSLLTQEENKAQNYLLAQDTLNTLEIIKNLGAKIE
                     QKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLAGISGFFVLSGDKYLNNRPMR
                     RISKPLTQIGARIYGRNEANLAPLCIEGQNLKAFNYKSEISSAQVKTAMILSAFRANN
                     VCAFSEISLSRNHSENMLKAMKAPIRVSNDGLSLEISPLKKPLKAQNIIIPNDPSSAF
                     YFALAAIILPKSQIILKNILLNPTRIEAYKILQKMGAKLEMTITQNDFETIGEIRVES
                     SKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINAKELRVKESDRIAVMVENLKL
                     CGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFAILGLLCGIEIDDSDCIKTSF
                     PNFIEILSNLGARIDY"
BASE COUNT         3095 a         1735 c         1128 g         3728 t
ORIGIN      
        1 tatttcttga tatacatttg gatcggataa atcttgattt aatttagcta tcttttgctc
       61 taaaaaatct attttttcag gatggttttt taatatctca ttttctttgt agcttaattt
      121 tttagagctt ttttcttttt ggttattatt ttgctcttgg gtttgaagtt ctaaagcaaa
      181 attatccaat tcttcaattt ctttttcatt ttcaagatat tcagtgtaaa gagtgtgtaa
      241 aatatttata tatccatctc cctcaaaagc ataaagtttt gttgcgattt tatcaacaaa
      301 gtatctatcg tgcgatacta gcaaaatagc cccttcaaaa ctaagtaaat attcttctaa
      361 tatattaatc gtagctatat caagatcatt agttggctca tctaaaatca aaacatcata
      421 ttctttagta aaaagcaagg ctaaagcaac gcgatttttc tctccaccgc ttaaaagagc
      481 cacgctttta tctaaaaatt ccttaggaaa taaaaaattt ttcaaatatc cataaacatg
      541 catattttta ccgcgaactt caaccctatc tccaccattg ggacaaaaaa tttcaagcaa
      601 gcttttatca gaatttacca agcttctagc ctgatcaaaa tatcctatct taagctctcc
      661 gcgttttatt tcaccgcaat cttgttttat ttgccctaga agaattttta acaatgttga
      721 tttcccgcaa ccatttcttc ctacgatagc tatacgttca ccttgtaaaa tacgcgttga
      781 aaaatcttta aaaagatttt tattgtttat atttttgctt atatttttaa gctcaaaaag
      841 cattttttta cgattgatcg ttttttctcc attaaaattt aaagccgctc ttgaaatttc
      901 aagttttaag cgtttgattg ctccaggatt ttttttcgct tcttcacgca ttttaaaaat
      961 gcgttctttt cgtccttcat ttcttttaag tcttgcttta acccctcttc taagccattc
     1021 ttcttcgctt tttaattgct ttaaaagagt ttcatggctc ttagcaaggc tttgtaaaat
     1081 ttgtgttttt ttctctaaat agtttgcata tccgccttta aaaatactaa gtttaccctg
     1141 ctctacttct acacacttgt gtgctatagc gtcaataaaa tatctatcat gggaaataaa
     1201 aatcacacac atctttgaat tttttagcaa ttcttccaaa aagcttgtca tatatacatc
     1261 taaatgatta gttggttcat caagcaataa aatatcagga ttttttagta aaagtatgca
     1321 aagcccaacg cggcgtattt ctccgccact taaagtagat ataatgcgat tttcatactc
     1381 aagcaaacta aattctttta aaacgcgtat tattttagat tctatattcc aagcatcttt
     1441 actatcaatc aaagtcataa gtgtatctat ttttttaaga taatctttat tactaaggat
     1501 cttcttctaa ttttttatgc agtatttcat attcttctaa agcattgtaa atttctgcaa
     1561 gctcttgctt gatagcttct tttacactta aatttgcgtt aaaatcaacg ctttgtgaaa
     1621 gcatggctat gctttttcca ttttgtctta ttactctacc gctatctaaa ggaagtgtgc
     1681 ctaaaagcgt ttttaaaaaa gtagattttc cttctccatt tttccctata atagcaatct
     1741 tttctccctc gtttgcacta aaatttgctt catttaaaac tattttgtct ccaaattttt
     1801 ttgaagcttc aattaaatct ataagagcca ttttttatcc ttgactgagt ttaaagctaa
     1861 aactagaacc atagcctaaa gtgctagaaa tttcaagata acttttatgt atatttaaaa
     1921 ttttctttac taaaaaaagt cctaaaccaa aagaattatc gctttttgca tcaattttat
     1981 aaaatttttt tgtaatcaat tttattttat cttcttctat gccttttcca aaatcttgca
     2041 ctattatctt ttgatctctt gctgttaaaa tgacttcttt ttgactatat tttaaagcat
     2101 tagaaagcaa atttataatc acttgctcga ttaaaaattc atcagcctta actttcgtgc
     2161 ttttaccttg caatacaact ctttcaaagc ctgggttttt agtgattttt tcacatagaa
     2221 aaaaaagatc aaattcttgc atttgcaagg cttcactatt aagattaaaa acaaaattaa
     2281 gcttatgggt taaagcatta agtttaatac tttgacgcga aattttttct agtaattcct
     2341 tttttaattt tttatcttcc aatttctcat cttttagcat ctctaagcta agatcaatca
     2401 cgcttaatgg atttttaagc tcatgagaaa tagcagaaat cacactagca agctgagtat
     2461 tttttaaagt aattttatcg ctttgttttt tatttttttg ggtattcttt agaattttat
     2521 ccttagtttt taaaagtttc tcatttagta aattaaattc tttaaacatt cctttttcta
     2581 atataacaac tttatgatcc cctatagaat ctaaaaaatc caaaatttta ttaaaatttt
     2641 tctctattct tctacctagc aacaacatta aaataaaaac aaacagcaag cacactccaa
     2701 aaccgattgc tatttttgtc caaaaaagtt ctaaatctaa aaaacgagga taaacaataa
     2761 taatatattt atatcctttg taaataaagc ttttagtaag aatttttttt gaattgaaat
     2821 ttaaaatttc tccttcttta agattagaaa aaaaatcagg attttttaca gaacttattt
     2881 tcatatcatt gtttaagata ataaaatcag ccctagtatc tttagcaaaa tccttgatat
     2941 tagcatcatt taaatgctct aagagagaaa attttaaaac atcatcaaga cttttgattt
     3001 tttgttcata ttgttttata agcaagaaat taagataaga attagtaaaa gtataaaaaa
     3061 taaacccaaa aatcaaagcc aatacaacaa aaaaaactat aaaaatattt ttagttttta
     3121 gcataattta tagccaacac ccctaacact tataatatga tcttttagtt ttggaaattt
     3181 atttctaagt cttgttagag ctatattgat tgttttatca cttgtagtat catctttcca
     3241 aacactttcg cttaaaaatt gtctagtaag caaggtattt ggattttcaa aaaaacattt
     3301 taaaagctca tagtcaagat ttgagatttc taatttttga tttttgtaaa agaattcata
     3361 attagccaaa tctaaaataa aatcaccaaa agatagtttt tcttcttctt ttttatggcg
     3421 ttttaaaatt gctttaatgc gaagcaaaag ctcattgaaa tcaaaaggtt tgcaaacata
     3481 atcatcacaa ccactttcaa agccttcgag caaatcttga tgcaaagcct tggctgtaag
     3541 aaaaataact gcttctttat atccttgctc tcttaaatct tgaatttttt ctaaagaatc
     3601 tccactgggc aaatttctat cgactattaa aagatcgatt tgctcattat cgagcaaatc
     3661 ttcaactcca aaaaaatcca ctaaagatat aacttcataa ccactagatt tcaactttaa
     3721 aacaagcagt tcgtttaaat ctatatcatc ttctataatt aaaattttaa atttcaacat
     3781 attggacaaa tacacacgcc tctaattgtt ttagttcatc taatacttct ttttgaactt
     3841 tttcatcaat caaaacaaca gccaaagcat acccaaaacc atctctacca agcctaaaat
     3901 cagctatgtt gatattttta gctgccaaaa cggaactgat tttagctata actcctggta
     3961 tgtctttgtt tttaaaaata atcattttcc cttttggctt aaaatcagtt ttaaagccat
     4021 ttaatccaac tatgcgttgt tcattttcat taaacactgt tcctgaaaca ctgatatttg
     4081 aattttcggt gataatttta acactaagtt tattattata accactattt ggaagagttt
     4141 cgcaagataa ttcaactcct ttttctttgg ctacaaattc tgcattaaca taattaattt
     4201 tctctcctaa aattccaccc aaagcaccaa cagctgcaaa ggttagcata gaatttgcat
     4261 actcgccaat aattccttca gcctctaatt taatactttt tatcggattt ttatcaattt
     4321 gaacagctaa aaaagccatt ttagaaacaa gttctatata aggagctaca aaaggtggta
     4381 agtcttcagt tttaattggt aaatttaagg cattaggata agccacgcct cgtgctgcac
     4441 ttaatgcttg ctcacaagct tctcttgcga tattatcttg actttctaaa gtatttgctc
     4501 ctaggtgaga agtaaccgaa atattttcaa agtctaaaag aggatgatta gtcgcgggtt
     4561 ctttatcgaa cacatctata ccaagccatg ctattttacc actttttaaa ccttcatata
     4621 aagcctcttc tgtgtacaat cctccgcgag cacaatttat taatcttatt ccatctttca
     4681 tttttgcaat ttcttgcttt cctatcatac cattggtttc tttggttttt ggtgtgtgaa
     4741 tggtaataaa atcacttttt tctaaaattt catccaaatt ttttgcttgc tccatatcta
     4801 aatctgtaat cttagaagca gaaatatacg gatcataggc taaaattttc ataccaaatg
     4861 ctttagcgcg gatagctact cttgaaccta tatttccaaa acctataacc cctagggttt
     4921 tgttcatcaa ttcaatgcca taccattttt ctctttccca ttttctttca atttttaaaa
     4981 aattatgagc attgacaaag cttctagctg atgttaaaag atgtgccatt gttagttcaa
     5041 ctgcggcaat agtatttgca gttgggacat tcatcacaat cactcctctt ttagaacact
     5101 ctggaatatc aacattatct acgcccaccc cagcacgcac aagcgctttt aattttttgg
     5161 catgatttaa gaaatttata tctacatctg tagaacttct agtaatagca acttcaacat
     5221 cgcttagcat ttgcataagt tcatcttttg gaacttttgc agcttctata agctcaatat
     5281 cttcagcttt tcttagaata tcgacacctt tatccaaaat agcatcacat actataatct
     5341 tttttttcat aaccaaattt cctttacttc tgtatttatt ttatattttt ttaattcttt
     5401 gataatatca tctataagtt tttcattacc tgtatccaaa aagatttctg gactatcacc
     5461 tgatttaaga agaaaatact tcacattaaa agaatttaaa gtctgtctta agcaaaacat
     5521 agaataaata tcatattttc caactataag ttgataatat ttatttttct ccttaagctc
     5581 gctagtatcc gcatcaaaat ataaggtaaa tttttctgct gctggggtaa aatctcttgt
     5641 aggccatttt gctaattctt cttgccatga aagatcttga ttttgggttt gaatgcttgg
     5701 ctgtgtattt gtatctttag caaattgtgg aatgaaattt acattagctt taaattgcca
     5761 aagcaatgta aaaacaacag caagcaaaat gagtaataaa atactcaaaa tgcttattgt
     5821 aatgtatttt ttcattaagc tagctgatct ttaatgatat cacctaaagt cactttatca
     5881 tcattattga tttcattaag aacttctctt tctttcattc taacaagatt tttaacactt
     5941 aggcgaattc tatttttctt ttcatcaata aaaactatag cagcttcaat atcgtcgcca
     6001 atttttaaat tttcaagcat agaagtgctt atatcttctt tatgaattaa agcatcaaca
     6061 tttttactta gttctacaaa aacaccaaaa tctttaatat cgcggatagc gccttttaca
     6121 atatcgccga ctttatgaat tttagcatat tcttgcactg gagaactgct taattctttt
     6181 gtacttaatg atattttttg gttttcttca tctattttga taatttttac cttgatttta
     6241 tccccttgag agaatttgtc tttgcattta tcgtttctat cccaagaagc atcttcatta
     6301 tgtaataaac cttcaatacc accaagttta acaaatgcac caaaagaagt tactgaggtg
     6361 atttctcctt caaccacatc tgcaatttta taagatttca taaattcatc aaaaggtcta
     6421 gaaagtaaat ttcttaaaga aactcttaag cgtctttcat ttggattgat ttcaattact
     6481 tcaacatcaa tttcttgacc tttgttgata taatcttttg gatttttaat gtttttatcc
     6541 caagaaattt cactgatatg taaaaatcct tctatatcat ttcctaaatc cacaaaagca
     6601 ccataaggct ctatatttga tactattact ttaatggtat cacctacatc aagagtatct
     6661 tttatctcgc tccatggatc aggtaaagcc gcttttatag acaaggataa atgtttgcgt
     6721 tctttatcat actttataac tttaactgga accttatcac cctctttata aagtgttcca
     6781 ggatttacag gtcctttgta agaaatttcg ctgtaatgaa caagaccatc aacacctcct
     6841 acatccacaa acataccata agtagtaatt tttttcacaa taccttcaat taaatcttct
     6901 tgttgtgcta cattattgat caattctttg cgttttcttc tctcgtcatc taaagttttt
     6961 ttacgagaaa caataatact ttgctcatct ttgtcgattt taataatttt aactttaaat
     7021 gttttaccta taatattatt tgtttcttta aagccatatt gagattttgg taagaaaaat
     7081 tcaacatcat tttcatcaac aactatcaat ccgcctttat tttttccaac tacttttacg
     7141 gtaaaaatat catcttgatt ttcttgatag tttttaataa attcaataac tttttctttt
     7201 ctcaaagctt ttttatgaga aagtaaagat ctgccaccac gagaacccat aacagcaact
     7261 ttaatactat cgcctacatt aaataatagc ttagaattat catcttgtat ttcgctaaga
     7321 gctaaaatac cttcagattt tttacctata tctacataaa cttcatcatt tttgatctct
     7381 acaatcacac cctctgttgt agcctcttct cttgatttat cgaaagcctc caaaagctgt
     7441 ccaaaatctt cttcctcaag ataatcatct acgccacctt gaactttttt gttcacctcg
     7501 ctcattatgg tcctttaaaa taatttttag aaattgattg attttacctt atttttcttt
     7561 aattagtgtt aagttttttt atttttgtta atttttttta aatttttgac ttttttattc
     7621 tatttgaaaa cattttttaa ttaatcttaa aattttctat tttggcgata actttttgta
     7681 tgatccaatc aggagtacta gcacctgcac taatgccaca atgtttttta tccaaaaacc
     7741 attctttttt taactcttct tcggtttcaa ttagatagct atcttcacaa ttggtttttg
     7801 caatcaaaaa aagttgtttt gtattggctg agtttttacc ccctacaaca accataacat
     7861 cacttttaag cgagagttct ttaatggcat cttgattttt aaaggttgcg tcacatatag
     7921 tattaaaaac ccttacttct ttggttttaa gtattaaaaa atttactatc tccataaaat
     7981 gctcaggctt cttagttgtt tggcttacca cagctatttt attaggaagt tttatatttt
     8041 gaagttcttt tttatccaaa accacataag cttttgtact tacataactt tttactcctt
     8101 taacttcggg atgattttca tctccaaaaa taacaacttc ataaccctcc ttgctcattt
     8161 gctcgcaaat ttgttgtggt tttgtaacaa aaggacaagt ggcatcaaaa atttctatat
     8221 ctttttttct caattcttct aaatcttgct ttgtaatacc atgagttctt ataatagcct
     8281 ttttttcatt gcttaaagct tgtatatttt ccaaagtttt gacattaaaa tttttttgta
     8341 aacgagaaat ttcttcgtta ttatgaataa gagggcctat agttgcagca tcttttattt
     8401 gttctgcttt tttaatagct cttttaacac caaaacaaaa accatagttt tttgctaatt
     8461 caataatcaa tcctagctcc taaatttgat aaaatctcta taaaatttgg aaaagaagtt
     8521 tttatacaat cactatcatc aatctcaatt ccacaaagca aacctaaaat agcaaaactc
     8581 atagcaatac ggtgatctcc atagctttta atttttgaag attttagttc gcatccacct
     8641 tctatttcaa aaccatcatc aagttctcta gcttcaacac cacaaagctt tagattttca
     8701 accatcacag caatcctatc gctttcttta acgcgtaatt ctttagcatt tattaaacta
     8761 gatttaccct tagccaaagc aaaagctata gccaaagcag gcgcttcatc tatcaaccaa
     8821 gcaatattat ctttaacttc tatgccatta agcttgctag actccaccct gatctcacca
     8881 atagtttcaa aatcattttg agttattgtc atttcaagtt tggcacccat tttttgcaaa
     8941 attttatacg cctctatacg agtaggatta agtaaaatat tttttaaaat aatttgagat
     9001 ttaggcaaaa taatagctgc taaagcaaaa taaaaagccg aagaagggtc attaggaatg
     9061 attatatttt gagcttttaa aggttttttt aaaggactta tttcaagact taagccatca
     9121 ttgctaaccc ttattggagc tttcatagcc tttaacatgt tttcgctatg atttcgacta
     9181 agagaaattt cactaaaagc gcatacatta ttagctctaa aagcagataa aatcatagct
     9241 gttttaactt gagccgaaga aatttcgctt ttatagttaa aagcttttaa attttgacct
     9301 tctatacaaa gtggagctaa atttgcctca tttcttccat aaattctagc gcctatttga
     9361 gtaagtggtt tgcttattct tctcatagga cgattgttta aatacttatc tccacttaaa
     9421 acaaaaaaac cagaaattcc tgctaaaaat cctatcatca aacgcatagc agttcctgaa
     9481 tttccacagt ctaaaataca atttggagat aaaatttctt tagggggtat aattttgacg
     9541 caagaatctt tttgttcaat tttagctcca agatttttta taatttcaag agtgtttaaa
     9601 gtatcttgag ctaagagata attttgagcc ttattttctt cttgtgttaa aagcgaaaat
     9661 atagcaaaac gatgagatat gctttt
//
LOCUS       DAEBKH010000054         9590 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.054, whole genome shotgun sequence.
ACCESSION   DAEBKH010000054 DAEBKH010000000
VERSION     DAEBKH010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9590
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.054"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..394
                     /locus_tag="KIL20_000913"
     CDS             <1..394
                     /locus_tag="KIL20_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD2720951.1"
                     /translation="TYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLS
                     ELFKFKEDFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIF
                     ITLSSEDSFFEQGVKFEVISFDKFSLGF"
     gene            complement(391..1122)
                     /locus_tag="KIL20_000914"
     CDS             complement(391..1122)
                     /locus_tag="KIL20_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HBD2720952.1"
                     /translation="MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(1097..1846)
                     /locus_tag="KIL20_000915"
     CDS             complement(1097..1846)
                     /locus_tag="KIL20_000915"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HBD2720953.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFTYKNEELFFEGKVKYCFEANYNFS"
     gene            complement(1843..2448)
                     /locus_tag="KIL20_000916"
     CDS             complement(1843..2448)
                     /locus_tag="KIL20_000916"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HBD2720954.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENA
                     LELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLD
                     SQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM"
     gene            2509..3498
                     /locus_tag="KIL20_000917"
     CDS             2509..3498
                     /locus_tag="KIL20_000917"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HBD2720955.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEDKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYI
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE"
     gene            complement(3518..4710)
                     /gene="dcuC"
                     /locus_tag="KIL20_000918"
                     /pseudo
     CDS             complement(3518..4710)
                     /gene="dcuC"
                     /locus_tag="KIL20_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856491.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            5125..8079
                     /gene="cas9"
                     /locus_tag="KIL20_000919"
     CDS             5125..8079
                     /gene="cas9"
                     /locus_tag="KIL20_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HBD2720956.1"
                     /translation="MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESL
                     ALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPY
                     ELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQ
                     SVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSF
                     SKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLN
                     NLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKK
                     YKEFIKALGDHSLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKD
                     HLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNP
                     VVLRAIKEYRKILNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDA
                     EIECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKLSDLQDEKMLEIDHIYPYSRS
                     FDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSTKWQKIEVLAKNLPEKKQKRILDKNY
                     KDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAK
                     SGMLTSALRHTWGFSAKDRNNHLHHAIDAAIIAYANNSIVKAFSDFKKEQESNSVELY
                     AKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEF
                     YQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFAL
                     KVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTS
                     STVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVT
                     KAEFRQREDFKK"
     gene            8076..8966
                     /gene="cas1"
                     /locus_tag="KIL20_000920"
     CDS             8076..8966
                     /gene="cas1"
                     /locus_tag="KIL20_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HBD2720957.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQVSLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFVLKKHNKIGQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            8959..9390
                     /gene="cas2"
                     /locus_tag="KIL20_000921"
     CDS             8959..9390
                     /gene="cas2"
                     /locus_tag="KIL20_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HBD2720958.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF"
BASE COUNT         3491 a         1315 c         1566 g         3218 t
ORIGIN      
        1 tacttatgtg atctatactt taaaacatga tgaaaaaaaa cttcaaaaga tttattttaa
       61 agattttggc ctaagaaata atctttgtat ttcaaaggat ttttcgcatt tatttgaaaa
      121 tttagtttta agcgagttgt ttaaatttaa agaagatttt ttttataaca aatactttaa
      181 cttttatagc caaatatcta aaattgctta tatttcaagt ccaactttag atattgattt
      241 gattaaatta cgtgctaaga aaattttacc aaaggcttta gaacttggaa tttttcatgt
      301 gatttttatc actctttcaa gcgaggatag tttttttgag caaggggtta aatttgaagt
      361 catatctttt gataaatttt cacttggatt ttaggtgttg tttgagtttg tatcgtattt
      421 ttcaaggttg tatcgtttga tgatttttgt aataagattg atataatatc ccttgcgttc
      481 agaataagaa tctaaagttt taatagcctc tagtcctgtt atctctttgc cttcgcttgc
      541 aaatttagct cttgcatcgc gaaacttttc ataagcaaaa tgacgattta aatttaaaac
      601 ataagagtaa acactatctt gcagactatc aaaaatctta attttatgtt ttttatctgg
      661 atgtcttaaa tcaggaatta aacctttctc accccaagtc cattctccaa aaagattatt
      721 tgcttctctt gcgaagcgac ttgtacctgt agcactttca actaaagctt gggctatacc
      781 catggatttt ggaatttttt gaatacgttt tttatattct gcaaaatcat aaagattttc
      841 aatgcgatat ttgtttttta tcgtgataag tttttcaaga tttgtttgat ttgaagtcct
      901 aaagcctgtt ttgtaagcat ctttaaaaaa ggcttcgata aaagctcttt cttgttcaat
      961 ttttttaaag ctttgatcaa acatttcatt catttttata aaaaaaattt gtcttttttg
     1021 atctatatca agtttgtaat attcctctcc aaagccattt tttagatcat cagcaaaaag
     1081 tgggattaga aaaagactaa gaaaaattat aattggcttc aaaacaatac tttacctttc
     1141 cttcaaaaaa caattcttca tttttatatg taaacccaac ctcttcacca cttttaggag
     1201 ttattttaac tttattttgt acttttttat ttaaaaatgc cagataaaaa caagccccca
     1261 ttcctgtgcc acaagctaag gtttcatctt caactccgcg ttcataggta cgaactttta
     1321 aatgattttc atctaaaatt tttacaaaat taacattggc attatatttt tgtctcattt
     1381 tttgacaaag tattgtatca aattcatcta aattttgaca aaaatgcact agatgtggaa
     1441 ctccagtgtc gcaaagttgc caagtttttc ctaattcttc aaaagtattt tgcacgcttt
     1501 ttattttgcc taaagatact tcaactttat cttgatttac ctttgctttt attattcctg
     1561 caccggttaa aaaactcatg ttaggattta ttttgttaat atgatgtgca aaatgtgccg
     1621 cagcccttga gccattgcca cacatagcag cccttgagcc atcgttatta taaaattccc
     1681 attcaaagtc gtatttttca tgaggcaata tcacgataaa gccatcccca cctatgccct
     1741 cataacgatt gcaaagttct ttagctaaag cacttctatc ttcttttcta tcagcatttg
     1801 ttatgacaaa atcattccca cttgcacaat atttataaaa tttcacattt ttcctttaga
     1861 aatttcttgt attactttaa cacattcttg cctaaaatcg acataagaat tagtattttt
     1921 aatgataaaa tctgcttttt taagtttttc ttcaatatct atttgagaat caagtctcac
     1981 ttttgcagct tctaagctga gcttatctct ttgcatgatt cttttaaggc ttaattcttt
     2041 aggtgtgtaa attacaatga ctttgcctaa attttcataa gcaccgcttt caaaaaaaag
     2101 aggaatttct acaaaaaaag ctttattttc tttatctaga atttgcattt gttctaaaat
     2161 tttagctcga attttaggat gagtgaaatt ttctaaggtt tttttagctt ctttgttgtt
     2221 aaaaacaatt tctccaagga tttttctatc gattttcttt tcttttgtga gtaaattttt
     2281 taagttaaag ggagaaaaaa tcttttcaag ttctaaagca ttttcatcta aaattttatg
     2341 agcaatttta tctgcgctaa tgcttttaaa gcctaaagaa ttcgctattt ctataaaagt
     2401 gcttttacca caagcaattg aagcggttac aaaaaaagca tttttcatct tatgccttat
     2461 taaaactttt ttcgttaaaa taccttttta gttcttaaag gaaaataaat gaaaatttca
     2521 tatgaagatg caggcgtaag tatagataat ggaaatgcct ttgtagaggc tataaaacct
     2581 ttggttaaag aaacttttaa tgataatgtt gtaggcggaa ttggttcttt tgctggtgct
     2641 tttagaatgc caagcggttt taaaaagcct gtgattttag gtgcaacaga tggagttggt
     2701 accaagcttc gcttggcaat tgatgctaaa aaatatgata ctataggaca agatttagta
     2761 gcaatgtgcg tgaatgattt gatttgtaat tttgctacgc ctttgttttt tctagattat
     2821 tatgctacag ctaaacttga agtagaagta gcaaaggctg ttgtatcagg cattgccaag
     2881 ggatgtaaga tggcaaattg tgcattaatc ggcggagaaa ctgctgaaat gcctggaatg
     2941 tatgcaaaag atgattttga tcttgcgggt tttgcagtgg gtatggctga agaagatgag
     3001 attgatagaa gtaaatttgt taaaaatggt gatattttat tggcacttcc tagttcagga
     3061 cttcattcaa atggttattc tttagctaga aaagtacttt ttgaaagttt aaaattaaaa
     3121 tttgatgaca agatagagga taaaaattta attgatattt tattagagcc tacaaggatt
     3181 tatgtgcgtg attttcttac attaaagcct tatattagtg ctctagctca tattacaggg
     3241 ggtggtttag tagaaaattt accacgcgtt ttgcctcgtg gcatgggtgc aactatacgc
     3301 aaacaccatc ttaaaactcc tgaaattttt tatattatag gacaggctgt agaagaaagc
     3361 gaaatgtata gaagctttaa catgggagtg ggtttagtaa tggttgtaga tccttctaat
     3421 gtaagtaagg ttttagaaaa ttcagatgcc tttattatcg gcgaaatttg cattaatgaa
     3481 ggtattgttt tagaatgaaa ataaagcgtc atacgcttta tttttttatt ttaagttcta
     3541 tttttgtagt gttttgttct tttggcaaag gattggtttg tgctagataa aaggctacaa
     3601 gtacatttac aagcatagcg ataagtaaaa gaggagtggt ccgttttata atatccattg
     3661 gagctacttt tgcaaatcca gctaaagcta tgattccgcc tgctattggt gaagctgcgc
     3721 gacctaaaca agatgcaatt tctacaggta aaactagagt aataggtgca atgcctaatt
     3781 tcgtagctat atcaggagct agttttccaa aagcattaaa agcagcaatt ccacttccca
     3841 taatcactgt ggcaaaataa actaaaaagc ttaaaatagc tatactcaaa agaattccaa
     3901 accatgcaaa atttcctgtt ccaagatttg aaaccgcgtt agcaaggata ttaactccac
     3961 caagtgcttt aatgccttca gcaaatactc cagcggcgat gattatgctt acgactgaga
     4021 taaaaatttt agccatagcc ttttaaaatc accatcatat cttcgcctaa ttttctagca
     4081 tttctgtgtc ttgcaaattc aacaagaaaa actaaagaaa ttcttacaaa atttgcttca
     4141 caacatcgag cttgatagta aaaaaatatg ctataaataa aaatacaaca ggtaaccaag
     4201 gaaagagtat gtaaaaaagt agggcattta ggatcaatga tttgcggaat ttcaacttca
     4261 tcatttaaaa cacctttttc tttatctctt ttatcaatcc aagcaaaata aaaaggaatc
     4321 aagatggcaa taactacaac ataggcaatc acactataaa tttggtaatt taaaaaaagc
     4381 cctacgacat tatcactttg tcctaccata tctgccatat tgattgaatt tccatctttt
     4441 ggatcataat caagtgcaat taaagaaagc gcacatacag ttgtaatagg acggatttta
     4501 agtgagatta aaacaggata aatacatgct aacaaaagca atccagcata gctagaaatg
     4561 acgattttta aagccattcc aataacaaaa gttccactta aaattaagta tttatttttt
     4621 gatttttcct gagggtttat ttgctaaaaa agcaagtttt gccgaagcat tgatatgttt
     4681 catgtaagca gtaaagcctg ccacactcat gataataagc cctgctccag aaagctgact
     4741 tttaaaagtc gctgtgataa aagataacta tcaagtaaaa catttaaaag cttgtatact
     4801 ctctgcttgg agcttttggt ataggtgttc ctgtgatata aaaagcaaaa ataagcaaga
     4861 taatatttga aagaaaaata caaaaatggg atcgtatttt tttgagtata tcataaaaat
     4921 tagcataggg tctcttgaat ttacaataaa ttggatttta tctaaatttt taaataaaaa
     4981 atatttttta tttaaaaatt acttgttttt tgtattataa aattaacata tatagtttgg
     5041 ttactgaaaa gtttatgttt gtttaaaaaa atgatttttg tattataatt atacacaaat
     5101 cataaatatt aaaaaggatc tagtgtggca agaattttgg catttgatat aggaataagc
     5161 tctattggct gggcatttag tgaaaatgat gagttaaaag attgtggagt taggattttt
     5221 acaaaggctg aaaatcccaa aacaggagaa tccttagcct tgccaagacg ccttgcaaga
     5281 agtgctagaa aacgccttgc tagacgcaaa gcaaggctaa atcacttaaa acatttaatc
     5341 gcaaatgaat ttaagttaaa ttacgaagat tatcaaagct ttgatgaaag tttagccaag
     5401 gcttataaag gatctttaat tagcccttat gagttaagat ttagagcttt aaacgagctt
     5461 ttaagtaagc aagattttgc aagagtgatt ttacatattg caaaaaggcg tggctatgat
     5521 gatattaaaa atagtgatga taaagaaaaa ggtgcgattt taaaagctat caagcaaaat
     5581 gaagaaaaac tagcaaatta tcaaagtgtg ggcgagtatc tttataaaga gtattttcaa
     5641 aaattcaaag aaaattccaa agaatttaca aatgttagaa ataaaaaaga aagttatgaa
     5701 cgctgcatag cgcaaagttt tttaaaagat gaattaaagc ttatttttaa aaaacaaaga
     5761 gaatttggct tttctttttc aaaaaaattt gaagaagagg tgcttagtgt agcattttat
     5821 aaaagggctt taaaagattt ttctcatttg gtgggaaatt gtagtttttt taccgatgaa
     5881 aaaagagcgc caaaaaattc gcccttagct tttatgtttg tagcacttac aagaattatc
     5941 aatcttttaa acaatcttaa aaatactgaa ggaattttat atacaaaaga tgatttaaac
     6001 gcccttttga atgaagtttt aaaaaacggc actctaactt ataaacaaac aaaaaagctt
     6061 ttgggcttaa gcgatgatta tgaatttaaa ggggaaaaag gaacttattt tattgagttt
     6121 aaaaaatata aagaatttat aaaagcctta ggtgatcata gtttaagcca agatgattta
     6181 aatgaaatag caaaagatat cactcttata aaagatgaga ttaaacttaa aaaggcttta
     6241 gcaaaatacg atttaaatca aaatcaaatt gatagcttaa gcaaattgga atttaaagac
     6301 catttaaata taagttttaa agccttaaaa cttatcactc ctttaatgct tgaaggtaaa
     6361 aaatacgatg aagcttgcaa tgagcttaat ttaaaagtag caatcaatga agataaaaaa
     6421 gactttttac ccgcatttaa tgaaacttat tacaaagatg aagtaactaa tcctgtggtt
     6481 ttaagggcga ttaaagaata tagaaaaatc ttaaatgcct tacttaaaaa atacggtaaa
     6541 gtgcataaaa taaacattga attagcaaga gaagtaggta aaaatcacag ccaaagagct
     6601 aaaatagaaa aagagcaaaa cgaaaactac aaggccaaaa aagacgccga aattgaatgt
     6661 gaaaaactag gcttaaaaat aaatagcaaa aatattttaa aattaagatt atttaaagaa
     6721 caaaaagaat tttgtgctta tagtggagaa aagattaaac ttagtgattt gcaagatgaa
     6781 aaaatgcttg aaattgacca tatttaccct tattctagaa gttttgatga ttcttatatg
     6841 aataaagttt tagtttttac caagcaaaat caagaaaagc ttaataaaac cccctttgaa
     6901 gcctttggca atgatagtac aaaatggcag aaaattgaag ttttggcaaa aaatttacct
     6961 gaaaaaaagc aaaaaagaat tttagataaa aattacaaag acaaagagca aaaagacttt
     7021 aaagatagaa atctaaacga tactcgctac atcgcaaggc ttgttttaaa ctacactaaa
     7081 gattatttag attttttacc tttaagcgat gatgaaaata caaaattaaa cgatacgcaa
     7141 aaaggctcaa aagtgcatgt agaagcaaaa agcggtatgc taacatcggc tttaaggcac
     7201 acttggggct ttagcgctaa ggatagaaac aaccatcttc atcacgccat cgatgcagca
     7261 attattgctt atgcaaacaa ttctatcgta aaggcttttt cagattttaa aaaagagcaa
     7321 gaaagcaaca gtgtagaact ttatgcaaaa aaaattagtg aattagatta taaaaacaaa
     7381 aggaagtttt ttgagccttt tagtggtttt aggcaaaagg ttttagataa aattgatgaa
     7441 atttttgtct caaaacctga gagaaaaaag ccaagtggag ctttacatga agaaacattt
     7501 agaaaagaag aagaattcta tcaatcatac ggcggaaaag aaggagtttt aaaagcccta
     7561 gagcttggta aaatccgcaa agtaaatggt aaaattgtta aaaatggcga tatgtttaga
     7621 gtggatattt ttaaacacaa aaagacaaat aaattttatg ctgtgccaat ttatactatg
     7681 gattttgctt taaaagtatt accaaataaa gctgtagcgc gaagtaaaaa aggtgagata
     7741 aaagactgga ttttaatgga tgaaaattat gagttttgct tttctttata caaagatagt
     7801 ttgattttaa ttcaaactaa agatatgcaa gagccagaac ttgtttattt taatgctttt
     7861 acaagctcta ctgttagttt gattgtttca aaacacgata ataaatttga aacgctaagc
     7921 aaaaatcaaa aaatattgtt taaaaatgca aatgaaaaag aagtaatcgc aaaaagcata
     7981 ggaattcaaa atctaaaagt atttgaaaaa tacatagttt cagcacttgg agaagtgaca
     8041 aaggctgagt ttagacaaag agaagatttt aaaaaatgag ttacgatgaa gcttttaaaa
     8101 cactgcttat tagctctaat gccaagctaa atttagagct aaatcatctt gtgattaagc
     8161 aagatgaaaa tatagccaaa ttgtttttaa aggatataaa catcatcgtt ttagaaagct
     8221 tacaagtaag ccttagttcc gcacttttta acgcttttgc aaggcataaa attatcttat
     8281 taacctgcga tgaaactcat agtataaatg gtgtttttac tcctttttta gggcattttc
     8341 aaagtgcaaa aatcgcaaaa gagcaaatga atgtaagtgc tcaaaaaaag gctattttat
     8401 ggcaaaaaat cattaaaaac aaaatcctaa atcaagcctt tgttttgaaa aaacacaata
     8461 aaatagggca aagcaatgag cttataaatt tggctaaaaa agtaagctta aatgatagta
     8521 aaaatatcga agctgttgca gcggcgcttt attttaaaac tttgtttggc gtttcttttt
     8581 caagagatga gctttgcttt gaaaattctg ctttaaatta tggctatgca atcattaggg
     8641 cttgtattat tagagcagtt tgtataagtg ggcttttgcc ttggcttggc ataaagcacg
     8701 ataatattta taattctttt gcactttgtg atgatttgat agaagtgttt agggctagtg
     8761 ttgatgattg tgttttaaag cttaagggtg aaagtgagtt tttaagcaaa gatgacaaaa
     8821 gagcgttgat tggcaattta caaagcaaaa tcaattttga tgggcaaaat tatcctttaa
     8881 acagagcgat aaatcattat gtggcgaatt ttaaaaatgc tttattgtat gaagatgagc
     8941 taaagatagt gaaatttgat gattgaagat aaatttatgc gcgtgctttt gatgtttgat
     9001 gtacctacta aaagtaaaaa agagcaaaaa ctagcaagta aatttagaaa caatcttata
     9061 aaattaggtt attttatgct gcaatttagc gtttatatgc gtatttgcaa gggtttaagt
     9121 tctgcaaaaa gttctattga aaatgtaaaa aagattttgc caccttatgg aaatgtaagg
     9181 gctttaatca tcactgaaaa gcaatttgat aaaatggagc ttttgcttgg tggcatagtt
     9241 tttaatgaaa aagttaataa cgaaactaat ttaacgcttt ttgatataga tagtcatgga
     9301 gaatttaaat acaaaaattc aaataatgaa gaaatacaac taaacaaaaa acaagaaaaa
     9361 tatcatcagc aaaatttatt tgaattttaa aagcggtttt aggggattgt aaccccgcag
     9421 agtcccgcaa actctttatt ttagtccctt tttaaatttc ttattgagat tatagcataa
     9481 tttttgctat ttttcatgaa aaaaccccga aattttcatt atctggtaaa tatctatttt
     9541 accataaaga aatttaaaaa gggactaaaa ctcctccttg tttgaaacga
//
LOCUS       DAEBKH010000055         9539 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.055, whole genome shotgun sequence.
ACCESSION   DAEBKH010000055 DAEBKH010000000
VERSION     DAEBKH010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9539)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9539)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9539
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.055"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..164)
                     /locus_tag="KIL20_000922"
     CDS             complement(<1..164)
                     /locus_tag="KIL20_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HBD2720959.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKS"
     gene            complement(169..693)
                     /locus_tag="KIL20_000923"
     CDS             complement(169..693)
                     /locus_tag="KIL20_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HBD2720960.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVGNSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(690..1472)
                     /gene="napH"
                     /locus_tag="KIL20_000924"
     CDS             complement(690..1472)
                     /gene="napH"
                     /locus_tag="KIL20_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HBD2720961.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRFFNTIPLS
                     DPFAVLQIILASWSIDLMALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(1469..2209)
                     /gene="napG"
                     /locus_tag="KIL20_000925"
     CDS             complement(1469..2209)
                     /gene="napG"
                     /locus_tag="KIL20_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HBD2720962.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLALKADDNYALRPPGAED
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFDAKKATNYLNDGEL"
     gene            complement(2227..5001)
                     /gene="napA"
                     /locus_tag="KIL20_000926"
     CDS             complement(2227..5001)
                     /gene="napA"
                     /locus_tag="KIL20_000926"
                     /EC_number="1.7.99.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HBD2720963.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEAMDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFEEFKKGLAPYTLEYTAKVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKIADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFAGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
     gene            complement(5294..5821)
                     /gene="tpx"
                     /locus_tag="KIL20_000927"
     CDS             complement(5294..5821)
                     /gene="tpx"
                     /locus_tag="KIL20_000927"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HBD2720964.1"
                     /translation="MSTVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLVNEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(5919..6659)
                     /gene="peb2"
                     /locus_tag="KIL20_000928"
     CDS             complement(5919..6659)
                     /gene="peb2"
                     /locus_tag="KIL20_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HBD2720965.1"
                     /translation="MKKILILSLVAASFLNAEILVYGPGGPAPVLKELALKFEEKTKE
                     KVIVTAGPTPAWIDKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIV
                     RPNNPKNIKNFEDILKDGVNVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAK
                     NSKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKGLEN
                     KKALEFVDFIKSKEAQKVWKKYTWKEVK"
     gene            complement(6708..8738)
                     /locus_tag="KIL20_000929"
     CDS             complement(6708..8738)
                     /locus_tag="KIL20_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HBD2720966.1"
                     /translation="MPLSELNNEQYLAATADFGRNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKELLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELASETRFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKGENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
     gene            8867..>9539
                     /locus_tag="KIL20_000930"
     CDS             8867..>9539
                     /locus_tag="KIL20_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720967.1"
                     /translation="MNLKIFSIIVSILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNSYSPSIQTNNSSSDININNNTIQKQETNLLDENQSLNNDTFNTSISE
                     NNQSLNNDTNTSNNINTNENKQILDTDKEKLKQENKQAKIEALKKEISKQQKILERER
                     AVKKELQSNKSNKNKYLNTAREYLSIGKNSRLEPELSTENMKVYILDGKFLSQYRINL
                     LKDMLS"
BASE COUNT         3257 a         1863 c         1178 g         3241 t
ORIGIN      
        1 aaacttttat ctttaatgtt atattgtaaa atttcacctt tatcagtgcc tatatataag
       61 ttttgcttat caagctttaa agctgttata ttggcattta atttcagctc ataagcataa
      121 gacaaaacac aaaaaagact caaaataaaa agaaattttt tcatttattt actttacacc
      181 ctcattaatc acatcaatta aatttgaacg actttttaat tgttcatttt taaattcagg
      241 tttaaagcta tttcccacta aaggttttgc atcgctttgt ggaacatgac actgagtaca
      301 attaaaacga ctatcgctaa tcatatctcc tgtggtttta ttgtgtctaa aatcataata
      361 atgactagca ggaagtggag ttgcaccagc atctgctgct atagccttat catggcagct
      421 taagcacata ttgttatctt tagttatagg taacaaatct tcaatagcat gcggaattaa
      481 tggtggtgca ttttcataag aacgctcaaa acgagtagat tccccaggtt gtaaagttgt
      541 gaaatttgct tccactaaat ttactttatt ttcattttct aaacttgctt ttctaagtcc
      601 aatttgttcc gaacttaccc cactattcat tgcacaagcg gcaaaaaata ccactgcagc
      661 acttcctaat aaaaccaatt tcttcttcat catttattcc ttaaatcaaa aatattaaaa
      721 ttcaaagcat catcattaca aacttctata catcttgcac accttataca ctctcctgat
      781 ttcacgctag tactttcttt tccaaccatc cacaaaacct gtttttcagg acaaatacgg
      841 atacattcat aacatttagt gcatttatca ctatcatgct ttattttaag caaagcaaaa
      901 cgagaaataa aagcataaaa agctcctagt ggacaaaaat gtgaacaaat tgccctaggg
      961 cttaaaaaag tatcgataca aaaaagtata aaggctacaa aaatccaaga acttgtagca
     1021 aaaataatcc ctctatgtat cattcctata taagaaaaac tttcaaacac aggcaatgaa
     1081 aatacaaaag aaaggactaa aaccaagacc aacacaaaat agcgtaaatt tttaggtaaa
     1141 attaaaaatt tattattaag ggttaattta tttcgcacaa aagcagcaaa atctgtgatt
     1201 aaattaacag gacaaaccca agagcaaaaa acccttccta aaagcaaacc atagataaaa
     1261 aatataatca aagctcctat taaagccatt aaatctatac tccagcttgc taaaatgatt
     1321 tgcaaaaccg caaaaggatc gcttaaaggt atggtattaa aaaatctaga agaacttaaa
     1381 tttccctgca ggataaaatc tgtagcttta aaactaaaaa gcgctaaaat tccaagctga
     1441 acgatgcgtc tagcaattaa atacttcatc acagttctcc atcatttaaa taattggttg
     1501 cttttttagc atcaaaatgt tttgaagtat ctgcattttt tatacgtcct tcatcttttt
     1561 catcccagcc ttttacataa tgagatcctg cttttcccaa tacatactcc cttggcaaaa
     1621 cacgaatggc tggtttttca gtaatacaag caagttcaca aagcccacaa cctacacaca
     1681 cttcatgatc cacactaggt agtaaaaaag cgtgcttggc ggtgcgttca ttgcgtttaa
     1741 gctcaagttt taaagcccta tctatcaaag gacaagctct ataacaagca tcacattgaa
     1801 ttccccagtg tgccacacaa gaagcactat caacaatagc aatacccatt ttcaaagatt
     1861 ctataccctg ttctaaatgc tttttatcta aagcatcagt tggacattct ctaatgcaag
     1921 gaatatcctt acaaagataa caaggaattt ctcttgcctt aaaaaaaggt gtaccatttt
     1981 ttggactatc taacaagcta gcaagcttta aagtatcata aggacaggct tttacacaaa
     2041 gcccacaacg aatacatttg cttaaaaatc tagcttcatc ttcagcccca ggaggacgca
     2101 aggcataatt atcatcggct tttaaagcca aattagccaa aaatccacct cctgtacata
     2161 aacatgcagc cttaaaggca ctaacgaaaa attctcttct acctttcatt taatcaaaac
     2221 cctaaatcaa gccttataaa tttttacagc acatttttta aagtcagttt gttttgaaag
     2281 cggacaagtc gcatccaaag taactttatt gatatataca ttctcatcaa accacggcac
     2341 atatacaagt cctacaggcg gtttgtttct tccacgcata tctactcttg cttttacttt
     2401 accacgacga gattccaccc aaactaaatc accttgattt aagcctaatt tctctccatc
     2461 tttctcactc atatagcaaa gtgcttcagg cacagcacgg taaagctcag gcacacgcat
     2521 agtcatagtt ccactatgcc aatgctctaa aacccttcct gttgcaagcc agaatggata
     2581 ctctttactt ggtctttcag gtgctttcat aaatggccta aagaaaattt tagccttatt
     2641 tttaatactg tgctcttttt catctttagg agctattaaa tccccatttg taagcatttt
     2701 gttaaaatca ccataaaaag caaaatctga atttggagcc gcttttttag cataataatc
     2761 aaatttagta ttaaatctcc attgtgtttc cttgccatta accacaggcc atcttaaacc
     2821 ccttacttta tgataggtat cgaaatccgc taaatcatgt ccgtgtccta agccaaattt
     2881 acgatattct tcccaaaggt atttttgaac gaaaaagcca taacctgcaa attcttttcc
     2941 atcactgcct tgaatttttc tctcatcacc tttaacatca gtattatcaa agccttttgc
     3001 gatagcatcg tttggattaa agctttttgc ttctttattg gcaaatagta catcaaaaag
     3061 tgtatcatct tcgctataac ccatagcttt tgcctcttct aaaacacttg gcaaggtaag
     3121 cttattatcc actttttgct ctttccaaac ttctttaagc ttaaagcgtt ttgcaaattc
     3181 taaaatttgc caagtatcac tcatggcagc acctacaggt aaaacttgtt gtttccaatg
     3241 ttgagttctt ctttcagcat taccataagc accccatttt tcataaatca tagcacttgg
     3301 taaaataaga tcagctattt ttgctgaaat tccaggataa caatcactta caacaataaa
     3361 attatccatt tctcttgctg ctgcgatcca gtgatttgca tttgcagtgt tttgccatgg
     3421 attattcact tgcacccatg caaatttaat ttttccatct tctaaatctc tcatgatatt
     3481 aagataagga gagcctggtt ttgggttgat ggtctttgca ggaactttcc aaattttttc
     3541 agaaatttct ctgtgttttg gattggctac aaccatatct gcaggcaaac gatgcgagaa
     3601 agttcctact tctctagctg ttccacaggc acttggctgt cctgttaaag aaaaggctcc
     3661 actacctggt ttagcttgct ttcctagtaa aaaatgcacc atataagctt gttcatttac
     3721 ccaagaacct cttgtgtgtt gattaaagcc catagtccaa aaacttacga ctttgcgatt
     3781 tttttctatg taaagattag ctaattcttg aagttttttc ttaaaatcct ccaaagattc
     3841 attatcatcg cctttggcta cttttgcagt gtattccaaa gtataagggg ctaaaccttt
     3901 tttaaattct tcaaaagaaa tttcccagtt tttatcagcc acaccttgat gtttcatttc
     3961 aaatttatca cccgctttaa cgccaagata agataaagaa gtagcctctt catcgtctaa
     4021 agtgattaca ttttcttttt caactgtatc tttttcactt tctttaaatt ttggatgatt
     4081 tggattattt ctcataccat aaccaatatc agcataacca gttgcaaata cgcagtgatc
     4141 tttgataaat ttcatatcca tagcctctgg atgattataa acaatctctc ttgctatgta
     4201 gttccaaata gccaaatctg tatttggttt aaaaataatt tcaatatcag caatatttga
     4261 agtacggtta gaaaaagtgc ttagattaac aactttgact ttatcaagat tacttagttt
     4321 tctatcactt actcttgacc aaaggattgg gtgcatttca gccatattag ctccccaagt
     4381 gatgatagta tctgtaagtt ctatatcatc ataacagcct gatggttcat ctacaccaaa
     4441 agtttgcata aaaccaacca ctgcagaggc catacaatgt cttgcatttg gatcgatatt
     4501 atttgttcta aagcccgctt ttgcaagttt taaagcagca taaccttctt ggatggtgta
     4561 ttgcccacta ccaaaaatcc ctatacctgt aacgccgagt tcattgtagg cttttttaaa
     4621 ttgtttttcc atttcatcaa aggctctttg ccaagaaact tgttgaaatt tgcctttttt
     4681 atcaaattcg cctttttcat tcatgcgaag caaaggcata acaagacgat cttcaccata
     4741 catgatctta gcattaaaat aacctttgat acaattaagt ccgcgattta cgggtgctgc
     4801 aggatcacct tttgttgcta cgattttgcc atcttttctg gctatcataa ttccacagcc
     4861 agttccacaa aatctacaaa cagctttatc ccatttccaa tcttcttctt gtgcaccaag
     4921 catagagctt ggaacactaa gtcctgcaac actagcagca cttgcaatag cggtattttt
     4981 aataaaatcc cttctattca tccttattcc tccaaaataa aaaaatcatc ttattataaa
     5041 aaatggagta taaaaatctc ttgaaatttt aataaaaata ataattttaa agctctattt
     5101 tataggagtt ttattgtcct ttttatatta ttcttacaca aaataaatat taaaaataat
     5161 caacttaaca attaaaatat aatcaactta acaattaaaa tataatcaac ttaacaatta
     5221 aaatataatc aacttaaaat aataaaaaaa tgaagatgta aaaattaagc cctaagaatg
     5281 ggcttaatca aaattaatgg caaccacaac caccgcagca gctagaacca ccaaaaaatg
     5341 catcaagttt tgcaatatct ggcatttctg tgatttcatt tacaagttct ttatatgcca
     5401 ctttaccctc tttaatcaca aatacggcac gagctaaaag cccttctaaa gcaccttcat
     5461 ttaccaaaac accatatttt tcaccaaatt cttttgccac aaaatcactt gcaacactta
     5521 aattttcaat accttctgta ctgcaaaatc ttcccatagc aaaaggtaag tccatactta
     5581 ctacaatcac ttcagcacca ttgtaactgg ctactttttt attaaattct ctagcttctg
     5641 tagcacaaac tggtgtatct aagcttggaa cacttaaaat gatttgagtt ttacccgctg
     5701 caccgatttc aatcacgctt aaatctttag ctttaagatt taccttagga gcatctgctc
     5761 caacttctac tgaatttcct ttaagtttta caggatttcc tttaaaattt actgtactca
     5821 tttaatttcc ttttttgata ttttaaacat tattgcaatt aatgttttag gagtgattat
     5881 atcctataaa tattaattat ttttaatttc actgaaaatt attttacttc tttccaagta
     5941 tattttttcc acactttttg agcttcttta ctcttaataa aatcgacaaa ttctaaagct
     6001 tttttatttt ctaaaccttt ttttgtagga gctatttcag ctgcacgata aatcactgca
     6061 tttttatctt tgataaataa agctttatca tcgcctaaag cctttgccca atgagaccaa
     6121 atgattaaag catcaatatt tggattgtta ttccactcat ctacagcagc tttggaattt
     6181 ttagcataaa tttttatatt tttacgtaat tttaccaaat tttctctttt tgcacttttt
     6241 aaagccatat cttcataaag tccaacttgt cctgcaccat caaccaccat aacatttacg
     6301 ccatctttta aaatatcttc aaaattttta atattttttg gattatttgg acgcacgata
     6361 atacctgatg gacgcacatt taaaacgctt aaattttcca aacttaaact tggaattttt
     6421 ttagcaaaat catccatcat tgaagtattg cctgaaaaaa tcaaatctgc attttctttt
     6481 gctttatcta tccaagctgg agttggacct gcggttacaa tcaccttttc ttttgttttt
     6541 tcctcaaatt ttaaagcaag ctcttttagc acaggagcag gaccacctgg accataaact
     6601 aaaatttcag catttaaaaa acttgctgct actaaactta aaattaatat ttttttcata
     6661 aaataaacct ttctttaata atataactta cttgaaagga aattttatca atctatagtt
     6721 aactctccct tgcaaagccc tgcttctata agaaaacgag aaggagcaaa agaagttttt
     6781 ttgtttttat catatttagc atagcttaaa taaagtatat tttttgccct agttaccgca
     6841 acataaaaaa gtcttctttc ttcttctaag cttccaccca ttcccataag cttttgatta
     6901 ggaaagcgac cttgtgcaag atcaatcaca aaaacaagat caaattccaa gcctttactc
     6961 gcatgcacgc taagcaaatt aactcctttg ccgctactca tttcgcttgc acctaaagtt
     7021 agaaaattat aatacttgta aatatcgcta taattttttg taagctcttt taaaacattg
     7081 aattttgttt ctattttttc taaattttca ccctttctta ataaatccac ctgccctgct
     7141 ttatttgtcg ctcttttggt tgcaagttct tcgcaaattt ctctataaaa agaattttca
     7201 caaattaaat tgactaaagt caaagaatgt tttatttcca tagctttttt taaaaaaaga
     7261 tagatttttt ccaaatttct agcgcacaaa tcattgattt ttgaaagtct taaaatagga
     7321 tgtgcatcaa attcactctc aaatttaaaa cgagtttcgc tggctaattc ttccaaatct
     7381 gcaaaaagcc caagttgata atttcttttt tgatgatttt gcaaatttac atttttatca
     7441 ggatctaaaa aaccttttat taaatttcca tgccctaatt ttaaaagtgc gtcaaaaatt
     7501 tcttttgcta aaactccacc cacacctttg gtgtattgaa ccaaatgaat aaaagccata
     7561 atatccttag gatttaccac aagagcaagc atagagctaa aagctttaac ttctaaactt
     7621 tcaaaaaaac ttccacttcc ctttctcaca cttgcaatgc cctgctccct taaagctact
     7681 tcaaccccat cagcacttga gttgttgcga aaaatcacgg caatttcttc caaacttact
     7741 ccgcttgtaa gtatcatttt ggctatattt tgatactgat caaataattc ttcaaaagta
     7801 agcaaagatg gggctttaaa ctcatcattt cttgtaacaa taagttcttt tggatataat
     7861 ctttcgttat ttaaaatcac tttattagcc aaagctaaaa tacttcttga tgaacggtag
     7921 tttttattta aagaaaaaat ttttgcatct ttaaaacgat ctttaaaccc acctatgata
     7981 ttaatatccg ctccattaaa agcataaata ctttgatcat aatcccctac acaaaacaaa
     8041 cttttactat gaaaagcctc tattaaggaa ctttgcaaag tgtttgtgtc ttgatattca
     8101 tctactaaaa tttcatcaaa ttcatatttt tcttctttta aaagctcttt tagattgata
     8161 agtaagtcat taaaatctac ataattaaaa cgcttttttt cattatcata ttcttttaaa
     8221 atatcttcat aaatttcagc ataaatactt tgatcttcgt agttttgaca aaaccaagta
     8281 taaaaatctt gattgtgtgc tttgttttga aacaaagaat aaagatcata taaataactt
     8341 gattgataag gttttatatc acttaaatgc ctaaaagttc ttttttcata gacactttta
     8401 agtagagttt ttaactcgct tgcttgcttt aaggctatat ttttatccgc atttctaagt
     8461 aaggtataag ccgtactatg aaaagttcct gcaagtattt tactggtaat atttttatca
     8521 aaaaatttcc ctaaacgccc tatcatttct ttactagctt tatttgtgaa agtcaaaagc
     8581 ataatttttt gaggtgccac tcccttgctt aaaagataag aaattcttgc aacaatagta
     8641 gaagtttttc ccgtccctgc acttgcaata acaagattgc gtccaaaatc agcagtagcg
     8701 gcaagatatt gttcattatt taattctgaa agtggcatta ttttccttat aaaagttaaa
     8761 attataaaaa aaaattactt aaaaatataa aaatttaaaa ttactttata ttagattata
     8821 gtacaatgct aaaattattt aactttctgt ttttaaggga tagcaaatga atttgaaaat
     8881 tttttctatt attgttagca tattaattgc tgttattgtg atattaggtg gaacatatta
     8941 ttatcttttt gaatattcaa aaccaaagaa ttacacctta aataccaaca cttacaccga
     9001 acaaaaatcg tataccaata actacgataa ttcctattca ccttcgatcc aaaccaacaa
     9061 tagttcatca gatataaata ttaataacaa taccatccaa aagcaagaaa caaacctatt
     9121 agatgaaaat caaagcttaa ataacgatac atttaataca tcaataagcg aaaacaatca
     9181 aagcttaaat aatgacacca atacaagtaa taatattaat acaaatgaaa ataagcaaat
     9241 tttagatacg gataaagaaa aattaaaaca agaaaataaa caagccaaaa tagaagctct
     9301 taaaaaagaa atcagcaaac aacaaaagat cttagaaaga gaaagagctg taaaaaaaga
     9361 acttcaatca aacaaatcaa acaaaaataa atatctaaat accgctagag aatatctaag
     9421 cataggaaaa aacagtcgtt tagaacctga gcttagcaca gaaaatatga aagtttacat
     9481 tttagatgga aaatttttaa gccaatacag aatcaatctg ttaaaagata tgctaagcg
//
LOCUS       DAEBKH010000056         9534 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.056, whole genome shotgun sequence.
ACCESSION   DAEBKH010000056 DAEBKH010000000
VERSION     DAEBKH010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9534
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.056"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..223)
                     /locus_tag="KIL20_000931"
     CDS             complement(<1..223)
                     /locus_tag="KIL20_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HBD2720968.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLQTTPS"
     gene            complement(220..2199)
                     /locus_tag="KIL20_000932"
     CDS             complement(220..2199)
                     /locus_tag="KIL20_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HBD2720969.1"
                     /translation="MAKIFVFLVFVFTTLFGAYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVINEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISEASINALRKA
                     VIKDIKVQNISQDTEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFEGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKLIFSKETTSQKKTEQVSKI
                     SEKKQDQKTEIKTKALETKKQDKKTNNEKENQEPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNKNLTLGFYAQTTNQNVNKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(2199..3290)
                     /locus_tag="KIL20_000933"
     CDS             complement(2199..3290)
                     /locus_tag="KIL20_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HBD2720970.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRIGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(3287..4492)
                     /locus_tag="KIL20_000934"
     CDS             complement(3287..4492)
                     /locus_tag="KIL20_000934"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HBD2720971.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYETQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITERFHSKEEANNAKSEFDRIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMHLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(4504..6699)
                     /locus_tag="KIL20_000935"
     CDS             complement(4504..6699)
                     /locus_tag="KIL20_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HBD2720972.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLARRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKEG"
     gene            complement(6683..6907)
                     /locus_tag="KIL20_000936"
     CDS             complement(6683..6907)
                     /locus_tag="KIL20_000936"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HBD2720973.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKLADIALYEIAENKITLEGLVETNR"
     gene            complement(6918..7637)
                     /locus_tag="KIL20_000937"
     CDS             complement(6918..7637)
                     /locus_tag="KIL20_000937"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HBD2720974.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSIVKNN"
     gene            complement(7689..8882)
                     /locus_tag="KIL20_000938"
     CDS             complement(7689..8882)
                     /locus_tag="KIL20_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HBD2720975.1"
                     /translation="MRKNILIFFCFFLFVDISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLTSQNEDLLKSKSN
                     MEGKLISLMAKDFAYDLPIPQGYIESEESFMAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQINKINESLKDYNAQLAKLQSLKQKQISEINKQKTDRAIYAKKLDDLQAQ
                     QEELRKTLNQLKIINDKEDANSNKNDTKIVKNNQKIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(8879..>9534)
                     /locus_tag="KIL20_000939"
     CDS             complement(8879..>9534)
                     /locus_tag="KIL20_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD2720976.1"
                     /translation="LDQNVVKTKVPFFAGLESLDPKDLIDRLKNDVSEKNLKVLKDSL
                     PKFYTLKLNSLPDQNELNSIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFL
                     FIIILLAFVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVIL
                     LAFFTQIFDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
BASE COUNT         3040 a         1802 c         1139 g         3553 t
ORIGIN      
        1 tagaaggagt agtttgtaaa aagcgcttca aagtaagaaa aaaatttaaa cctataccaa
       61 aaccactctc tgcgataatg aaattttctt gatttttcca ttcaaaagaa tgagtataaa
      121 caaatttact ttcatttaaa ccatctttgg aattaaaata aaaatcatca aaatccaaag
      181 aaaaaggagt attatcttta aagattaact tagctttttt catcggttgt tataaaaata
      241 actctcaact ccatcagcaa tacccttaac caataaatct tgaaaagctt tattggcgat
      301 tcttttgcct tcatttggat gtgtgatata gccaatttca atcaaaattg caggcatttg
      361 cgcacctact aaaacccaaa aaggtgcttc tcttacaccg ccatctacga ttttatactt
      421 tttgcgtgtt tgagtgagta tatttttttg tacatcaatg gctagtttat ttgaagcaac
      481 gattttttca cgatttaaga aatttaaaat actttgtttt gagaaataat taatctcttc
      541 aaaatctcct tgattttctt tttctgctgc ctttttactt ctttcacttc ttgcaggact
      601 taaaaagaaa gtttccacac cttcactact tttggctttt gtggcatttg gtgctgcatt
      661 agcatgtata gaaataaaca aatccgctct tttatcattg gcatatttag ttctatcacg
      721 aagattgata aatttatccg aacttctagt ataaagcact ttataaccgc gttttttaag
      781 ttcatttcca agttttaaag ccgtgcttaa aactatatct ttttctttta agcttccttt
      841 tttatcactt aaggcaccgc tatcttttcc accatgcccc gcatcgataa ccacaagctt
      901 tcctgatttg taatttgtat ttaaagtttt actagaactt tgagttgctt ttttgtttac
      961 attttgattt gtagtttgtg cataaaaacc taaagtgaga tttttattat ccaactcctt
     1021 taagagttta aattctttag gagcactcaa aaccacacga acagtttttg gattgtattg
     1081 agtaactgta atcacatttt gtccaaaagt aaagcttttt ctattacctt ctaacacacc
     1141 cttaaaactt acaacatatc ggaatttttg atctttggta tcaaatactg ctatttcttt
     1201 ttcatctaaa tcatcgctta aatttaacac cacagcatta gaaattttat ccacatctaa
     1261 aacatataaa ggctcttgat tttctttttc gttattggtt tttttatctt gtttttttgt
     1321 ttctaaagct ttggttttaa tttctgtttt ttgatcttgc tttttctctg aaattttact
     1381 aacttgctca gtcttttttt ggctagtagt ttcttttgaa aaaattaatt tttcttcttt
     1441 aaaagatata tcaataggaa ttttttcttt agcataaacc actatgcgta tggttttggg
     1501 attaaattgt gaaatcacta aacgatagtc atcaaattta aactcttttt tacccccttc
     1561 taaaaccccc tcaaaatcac taataaaacg atagtttcct ttttcgtcta aagcaaaact
     1621 ttttaattga tccttatcca aatctgcatt tagttcaaac tctacacctt ggtttgtttt
     1681 acttgacttt aaaacataaa ttttatcatc gctttttgct ttagaaacga tactactctt
     1741 tggtgcttgc gaagttttag aatttgtttt ttctgtattt tttatttgtt cgttagatga
     1801 ttttttttca tttttttgaa ctgtttttat aggttcaaaa gttgattttt cagtatcttg
     1861 agaaatattt tgaaccttaa tatctttaat aacagccttt cttaaagcat taatacttgc
     1921 ttcacttata ccactttctt ttaactcatt agcatatgac ttgtcatcta aatttaaagt
     1981 atttgaactg atgatcaatc tttttaaaat ttcaatttta gttttttcat cttcattaat
     2041 aacactttgt atataaaggc ttttgagctg atggtgaaat tttacttgta cttcactttt
     2101 agaaccgata aaatttttat cgaaatttgc aagttcattt tcataggctc caaaaagagt
     2161 tgtgaaaaca aatactaaaa atacaaaaat tttagccatt attcaccatt aaccaatttt
     2221 tccataagtt ctttaacact gataagctta tctaaacgat atccatttgc acctgtaaag
     2281 aaaagccctg tttctttttt acctgaccac gcatcaaaaa gcctatctgc tatacaatac
     2341 cctactttag ttgcctcttt tccgcgtcca caaggcgcta cacaattgct tatacaattg
     2401 atctttggac ctattctttt atctaccaaa tttaaaagat tggttctaac cccacgtgca
     2461 ggatagccca caggagattt aataagctct atatcttctt ctttagaagc tagtaaaacg
     2521 cttttaaatt cttcgcttgc atcacattca aaagttccta tgaaacgcgt tcccatttga
     2581 acaccactag cccctaaaga aatagcgttt tctatatctt ttttatccca aattccacct
     2641 gcagcaatca caggaaaaga cccccaattt ttagcctctt ctaccacagg agcgattaat
     2701 ttttctagct gataatttgg atctaagcac tgctcataag taaaaccttg atgacctcca
     2761 ctttttggcc cttctaaaac cactgcatca ggcaagcgat tgtaacggct ttgccatctt
     2821 ttgcaaataa tttttaaagc ctttgcagat gaaatgatag gcactaaagc cacatcagga
     2881 aaatctgcag taaattcagg taaatttgtg ggaagtccag cacctgaaac aatcacatta
     2941 aaaccaactt cacaagcatc gcgtgctatt cttgcataat cattacttgc acataagata
     3001 ttacacccta aaggtgcatc gccacaaact tttcttgcat tattaatcaa agcttgcaaa
     3061 cccttgcgtg agtaaaaatt ttcacttcca taaggcttag catttaattc tttacttgca
     3121 tactttcttt cttcataata tcctgttccc acagaagaaa tgatcccaag tccaccattt
     3181 aaagaaactg cagaagctaa tctatcccag cttatgccta gtcccattcc cccttgaaaa
     3241 atgggatatt ttatagtatg ttttcctatt tgtaagggtt gtaaattcat tcttttacct
     3301 ttaattttgc aaattttctt ttacctattt gtaagatgta ttctccttgt tctaaatgca
     3361 tttgctcgtc gctaactttt tgagaattta cacttactgc attagcactg atgcttcttc
     3421 ttgccgcaga agtagaactt tccaaaccac attcaaccaa agccttagca agccaaattt
     3481 ttccttgtat ttcaaactca gccatatcac ttggtaaagc attttgagaa tgaatcctat
     3541 caaattcaga cttagcatta ttagcctctt ctttggagtg aaaacgctcc gtaatctcta
     3601 aagctaaatt ttctttagct tttttaggat gtaaattgcc ttgttctata tcttttttta
     3661 tttgcgcgat ttcttctaga cttttttgac ttaaaagttc ataatatcta aacatcaatt
     3721 catcactaat acttaaaatt ttagcataca tatcattagc tttttctgta acaccaatgt
     3781 aattatttaa actcttactc attttgttta caccatctaa accttcgagt aaaggcatca
     3841 taatcacagc ttgttctttt cctatattat aaaccctttg aagctgtctt cccattaaaa
     3901 gattaaattt ttgatccgtt ccgcccattt caatatcgct ttttaaagcc acgctatcat
     3961 atccttgaag taaaggatac aaaaactcgc aaatcgaaat agggctttgc tctttaaatc
     4021 tcttggtaaa atcgtcacgc tcaagcattc tagctacact aaaagttgaa gtaagctcta
     4081 ctatacccgc agctccaagt tcattaagcc aagtagaatt aaacttaatc tgtgtttttt
     4141 ctttatccaa aaccttaaaa acctgcgttt cataagtttt agcattgatt aaaacttgct
     4201 ctttatccag ctttttacgc gttgcacttt ttccacttgg atcgccaatt tgtcctgtaa
     4261 aatccccaat caaaaattgc acaatagctc catgtttttg caaaaaagcc atttttgtta
     4321 aaaccacgct atgacctaaa tgtaaatcag gtgctgtagg atcaaaccct gcctttatga
     4381 agaaattttc acccttttca taataatttt taattaaatt ttctattctt tcttcatcaa
     4441 taagctctgc acagccacgc ttaacttctg ctaatatttt ttttatatcc ataataaacc
     4501 tttttaacct tctttataag catcatttaa agatgtaaaa tctaaaattt tacaacgaga
     4561 ttttaaccta tccttgacac tatctgggtt gatattatca ggaatttcca ttgtaatctc
     4621 aaaataatct accgccgaat ttaaatcact tgataaatta attgttaata aatttatctg
     4681 cattttagct aaaaatgcca aaaattccgc taaaacacct tttttatttt ccaaagaaaa
     4741 aatcaattta taagatttag ggatgttaga atcccatttt ataaatacca tatcttgatt
     4801 attatctatc attttatcag ctctatcgca aagcttatga tggacaatag cgttaccacc
     4861 tttaacaaaa gctaaaacag catcacctct ttttggatgg caacaaaaat caaaatccac
     4921 attagcgatt ttatggttgc aatatagagt aaaatttcct attttttgtt ctttaatctc
     4981 atatttatca aaccaatatg acttcttggc gtatttttta agaccattaa ctatatcttt
     5041 taaataagca ctatctgttg ctacttgtct aatacgtctg gctaaatttt ctttttctat
     5101 ccaagtttca attctgtttt tatcaactcc aaaaataaaa cttaacatat taatagaact
     5161 tgctagatta atctctctga ttttttgctt acaaaattcc cttatacttg cttttgcttt
     5221 tcctgtttta acactatcta tccaagaaca gcgataaaat ttatcattac tagtaaccac
     5281 tcgcacaata tcgccatttt taagctcggt taacaaaggt actttaatac gatttacata
     5341 agcacttttt gcatgaagcc ctactttggt atgcacttca taggcaaaat caagaaccgt
     5401 tgcaccacga ggcaaagtga aaatttctcc cttaggagaa taaactgcga catcttcaac
     5461 ataaagacta tctttagcat attcataaag ttcaatagca ttataatctt ctgcattttc
     5521 aagattgttt atactttgca ttgaaatatc tgtaagccaa tcaagacgag gcgcaaccac
     5581 actgccatct tctttatatt tccaatgcgc tgctatacca aattccgcaa ttttatgcat
     5641 atcaaaagtt cgaatttgtg cttctataat acttttagca tcaaaaagtg tggtatgtat
     5701 ggtttgataa ccattttgtt taggcaaggc tatataatcc ttaaaacgcg aaaccaaggg
     5761 gttaaaatgt gtatgtaaaa ttcccaaagc taaataacaa tcacttactt tttcaaccaa
     5821 aattcttacc ccaagcaaat caagaacttc ttcaatacca atgccttttc tttgcatttt
     5881 aagataaata gaatagctat gtttaatgcg tttttgaatt tcaaaactac cttgtctaaa
     5941 gccattgctc aaaaataaaa gttcgatttt ggaaataaat tcatttaaac ctaattgcat
     6001 ttcttgatta ttggagttga tataattgtc aataagctta tactcatctg gcataagata
     6061 tttaaaacta agatcttcca aataattttt tatgcttgaa ataccgagtc tatgggctat
     6121 tggagcatat acaactaaag tttcttcgct gattcttttt tgcttatctt ctcttagaat
     6181 atcaagagta agcatattat gcagcctatc acataacttc acaatcaaaa ccccaacatc
     6241 ttcaatgctt gctaaaagca tatttctgaa agtcaaggct gatttagtta aacttttttt
     6301 agattttgat gaaatgagat tatcttctct aatttctata attttagtaa gtcctaaaac
     6361 aagttttaaa acctcagaac caaactgctc tctaagttct tcttcagtgc agtttgtatc
     6421 ttcaatcaca tcatgcaata aagcagctaa aatattgctt ttattttcac ttaaaaatcc
     6481 aaccagtgtt gccactaaaa taggatgtac cgcataaggc tctccacttt ttctaaactg
     6541 cccttcatgg caaaatatac agtaatctac cgctttttca agaatggcat catggccaca
     6601 aatttcgaaa agcaaagcct tagcagcttc taaatcttta caatttttta cattatcgat
     6661 taattgttca agcaataatt cttcatcgat tggtttcaac taaaccctct aaagtgattt
     6721 tattttctgc aatttcatat aaagctatat ctgcaagttt atttttattt ttatcaaagt
     6781 ctaccaaagg ggttgctcca tttgccaatt gttccgctct ttttgctacc actaaagaaa
     6841 ggcgatatct atcattaccc attttttcca aagcttttgc cgctacttct tctattcttt
     6901 tatccataat tttctcctta attattttta acgattgaac aaaggctagt atcaccttgt
     6961 atgattttaa gtaaattacc ctcttcaaac atattacaaa ccacaatagg aagtttgtta
     7021 tctttagcta aagctatagc tgtatcatcc atcactttaa tattatcttg catagcctca
     7081 tcataactta aagtatttaa aaatactgca tcatcaaatt gttttggatc tttatcataa
     7141 actccattaa cttttgtagc ttttattacc atatctgcat caatttccac agctcttaaa
     7201 atagctgttg tatctgtagt aaaataaggg tttccagtac ctgcggcaaa aaccacaaca
     7261 cgaccctttt ctaagtgtct ttgcgctctt ctcataatat aagtttcaca aaatgcttcc
     7321 atctgaatgg cgctttgaac cctaacttca agtccagagc tttctaaagc ttcttgtata
     7381 gcaatagcat tgataaccgt agcaagcatt cccatatgat ctccacttgt ccttttaatc
     7441 aatccgccct tagcagcact tactccgcga ataatattac caccgcctat aactatgcct
     7501 acttctattt gattttttat aagttcttta atctctgaag ctatgaattt taaaatagaa
     7561 ttttctatac caaagccatt ttcacctgct aaagcctctc ctgaaaattt tactaaaact
     7621 ctttttctct cttgcattat ttctccttat ttaacttgaa attatatttt aaattccatt
     7681 aaatttagct aatttaagct aatgagttcc aaaggattga tatgaaaatt tttttgagtt
     7741 acttcaaaag taagatcatt ttttattcta cccactacgg cacctttttt aatattctta
     7801 ccaactttaa tattaggagc aatcttatct aaatgtgcgt atattgtatg tatgccatta
     7861 tcatgttcaa caataacaac tcgagctaac atactagtat ctttggcaaa aactattttt
     7921 ccatctagca catttttaac aactgcatcg cttttattgc ttcttaaaac tacattctcg
     7981 ttaaaaattt taagattgta aacaggatca acataatttc caaatttttg cttcacagta
     8041 aaagaatcca atggagctat ggtttttttt cctgtgtaac gcttgactga acttccttga
     8101 tagcttgaac ctaattgtct tattttttga ttatttttta ctattttagt atcatttttg
     8161 tttgaatttg catcttcttt atcattaata atttttaatt gatttaatgt ttttctaagc
     8221 tcttcttgct gagcttgcaa atcatcgagt ttttttgcat atatagctcg atctgttttt
     8281 tgtttattaa tttcgctaat ttgtttttgt tttaaacttt gaagcttggc taattgagcg
     8341 ttgtaatcct taagactttc attaatttta ttaatctgag cttgtttatc atcaataagc
     8401 ctgcttactc cctcataatc tttagaaatt ttaaaaattt cttcatttaa aactttgttt
     8461 aaacttccta aaatttcaaa agccataaaa ctttcttcac tttcaatata gccttgaggg
     8521 ataggtaaat cataagcaaa atctttggcc attaaagata taagcttacc ttccatattt
     8581 gatttacttt taagcaaatc ttcattttgg cttgtaaggg tgtttaactc ttgattttga
     8641 gccttagcac ttgcttcaag cttagaagtt tgtgaattta agctttcaat ttgcaaactt
     8701 agatctttca aacttttttc accatttaaa atgtcgctag ccaaatcttc aagtttttta
     8761 tttaactgtt cttgtatgcg tttattttct tctaaacttt ttgttttttc atttatagcg
     8821 tttgctaaac ttatatcaac aaacaaaaaa aaacaaaaaa agataagaat attttttctc
     8881 atcttttaac cttaaacata accgtattta cacacaacaa gcaaataaac aaagtagcta
     8941 aaaaaattaa agtcaaatgt aaaataaaat taataggtgg aaaaataata tctacagcct
     9001 ttaaactttc ttggataata gaaagatcaa aaatttgggt aaaaaaggca agtaaaataa
     9061 caaaagcaat aaaacaatca accacaacca ccttataaag cataaaagat ctaaaccaaa
     9121 acggagctcc aaataaacac ataatttcaa tacgatcggt atgttcataa agccaaattc
     9181 tcatctgttt taaaaacaaa acaaaggcaa gtaaaataat gataaacaaa aataaccaaa
     9241 aaacaaattt catcaaaata agcaaagagt atatcttatc atgggttttg gaaaaagttt
     9301 caaccttact aacacctaca atatttaaaa gttgattttt aatcgaattt agttcatttt
     9361 gatcgggtaa agaatttaat tttaaagtat aaaattttgg cagagaatct tttaaaactt
     9421 tcaaattctt ttcagaaaca tcatttttca aacgatcgat taaatcctta ggatctaaag
     9481 attcaagtcc agcaaaaaat ggtacttttg tttttactac attctgatca agtt
//
LOCUS       DAEBKH010000057         9384 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.057, whole genome shotgun sequence.
ACCESSION   DAEBKH010000057 DAEBKH010000000
VERSION     DAEBKH010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9384
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.057"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..169
                     /locus_tag="KIL20_000940"
     CDS             <1..169
                     /locus_tag="KIL20_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HBD2720977.1"
                     /translation="LEILPKLVEKNIKNLWLQLGISNETAKEECKKLDINFIQNRCIM
                     LEYPHFKTKEK"
     gene            169..1380
                     /locus_tag="KIL20_000941"
     CDS             169..1380
                     /locus_tag="KIL20_000941"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HBD2720978.1"
                     /translation="MLELNKIYKAKQQISEFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSTEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEST
                     PLLKVSATKALGAEVILKGDNFDEAYAFATSYAKENNLSFIHPFEDEFVMAGQGTLML
                     EMLDEISDLDMIIAPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVAALLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIHVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(1377..2102)
                     /gene="truA"
                     /locus_tag="KIL20_000942"
     CDS             complement(1377..2102)
                     /gene="truA"
                     /locus_tag="KIL20_000942"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HBD2720979.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGVLSHLGIVSPL
                     LMASRTDKGVHASYAVASVECGDHFVNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHSSYSPFMASYVHFYPKFDLDKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(2099..3124)
                     /locus_tag="KIL20_000943"
     CDS             complement(2099..3124)
                     /locus_tag="KIL20_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HBD2720980.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            complement(3124..3900)
                     /locus_tag="KIL20_000944"
     CDS             complement(3124..3900)
                     /locus_tag="KIL20_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HBD2720981.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKPFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLPISLLINEILGIILLILAYSLSQNFYDFLFLSLF
                     LFNLFLLSLIDIKLKAVPQILLWSAFLFAFFYAFRESEILHFLIFKEFSGGFLLNAFS
                     FGGFVFLLKSLVFFLMNFRKKDEILENLGDADIIIMSCIGGILGFEYGFLVLLIASIL
                     TLPFFIFFKIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
     gene            complement(3897..4565)
                     /gene="uppS"
                     /locus_tag="KIL20_000945"
     CDS             complement(3897..4565)
                     /gene="uppS"
                     /locus_tag="KIL20_000945"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HBD2720982.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            complement(4569..5186)
                     /locus_tag="KIL20_000946"
     CDS             complement(4569..5186)
                     /locus_tag="KIL20_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2720983.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFIFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGISVFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            complement(5183..6337)
                     /gene="coaBC"
                     /locus_tag="KIL20_000947"
     CDS             complement(5183..6337)
                     /gene="coaBC"
                     /locus_tag="KIL20_000947"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HBD2720984.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNSLLKFAS
                     KMSFEALADEILCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKPLIIAPAANTNMFHHFSTQNSLKILKENKALIIEPICKVLACKDEGVGAL
                     AEVKDIFNITKRELLKEKFWCNKSVVITGGGTRERIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLSHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            complement(6334..7623)
                     /gene="glmU"
                     /locus_tag="KIL20_000948"
     CDS             complement(6334..7623)
                     /gene="glmU"
                     /locus_tag="KIL20_000948"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HBD2720985.1"
                     /translation="MKTSILILAAGLGTRMKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALRGFEPKNERVLILCGD
                     MPLVEQTSLEALLSNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQEKIKKYWMQQGVIFHLPQSTFIGTDVEFMGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGALFINRAEHKMIKDYYYKKFQK"
     gene            7767..8501
                     /gene="fliP"
                     /locus_tag="KIL20_000949"
     CDS             7767..8501
                     /gene="fliP"
                     /locus_tag="KIL20_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HBD2720986.1"
                     /translation="MKKILLFLLLSMSLFAAEATIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            complement(8517..9287)
                     /locus_tag="KIL20_000950"
     CDS             complement(8517..9287)
                     /locus_tag="KIL20_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HBD2720987.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDERKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILVPFQENPEFWGIAVQKGNAELKKE
                     LDEFIAESKKDGLFDSLGEKYLKDVKDTFKKNNLEFFF"
BASE COUNT         3341 a         1660 c         1195 g         3188 t
ORIGIN      
        1 actagaaatt cttcctaagc ttgttgaaaa aaatattaaa aacctatggc ttcaacttgg
       61 tattagtaat gaaacagcca aagaagaatg taaaaaatta gatataaatt ttatacaaaa
      121 tcgttgcatt atgctagaat atccgcattt taaaacaaag gaaaaatagt gttagagctt
      181 aataaaattt acaaagcaaa acaacaaatt tcagagtttg taaacaaaac tcctttcata
      241 tactcttctt ttttaagtga tatttgtcaa agtgaaattt atcttaaaaa tgaaaattta
      301 caaattacag gtgcttataa aattcgtgga gcttataata aaatagccaa tcttagcact
      361 gaacaaaaac aacatggagt cattgccgca agtgcgggaa accatgctca aggcgtggcc
      421 attagtgcaa aaaaatttgg cattaaggca gttattgtaa tgccagaatc cactccgctc
      481 ttaaaagttt ctgctacaaa agccttagga gcagaggtga tactcaaagg ggataatttt
      541 gatgaagcct atgcctttgc aacctcttat gctaaagaaa ataatcttag ctttattcat
      601 ccttttgaag atgaatttgt aatggcagga caaggaactt tgatgcttga aatgcttgat
      661 gaaataagcg atcttgatat gattatcgca cctgttggag gtggaggact tataagtggt
      721 atcgcaagtg cagctaaaca aatcaatcca aacattaaaa tcatcggcgt tggagccaaa
      781 ggagctcctg caatgtatga aagttttcat gctaaaaaaa tcaaaaatgc aaaaagcgta
      841 cgcactatag ccgatggtat tgctgtgcgt gatgcaaatc ctattaattt taatattatt
      901 ttagaatgcg tagatgattt tatccaagtt gatgatgaag aaatcgctaa tgcggtattg
      961 tttttacttg aaaaacataa aatcatagtt gaaggcgcag gagctgcgag tgtagctgcc
     1021 ctgcttcatc aaaaaataaa tacacaaaat cataaaaaaa ttggcgtagt tttaagcgga
     1081 ggtaatatcg atgcacaaat gctaaatatc atcatagaaa aaggtttatt taaatcctat
     1141 agaaaaatgc aaattcatgt tactttagta gataaacctg gggcattatt acaccttaca
     1201 gacagcttaa aaatagccaa tgcaaatata gtaaaaatcg actatgatag attttccacc
     1261 aagcttgatt atggcgatgc gatgatttca attaccctag aaaccaaagg taaagaacat
     1321 caagaagaaa taagaaaaat tttaacccaa aaggccttta atttctatga aagtttttaa
     1381 taacatatac ggcttaaata aagcccattt ggcggtgcta aaaagtgatt gtattgcttt
     1441 ttagcttcaa tctgttcttt gagttctttt tcactcattt ttccttctaa aacctttaaa
     1501 acacttgcta cgcttaatct aatttgccct cttaaaaaac cattagcttt aaaatgaaaa
     1561 atgctaaaat ctttataagc ataagctcta gcaataaaaa tttctcttaa agtcgtttta
     1621 ttatcccctc cacttttgca aaaaaacttt aaatcctttt ttcccacaaa aaaacccaaa
     1681 agctcattag ccttatctaa gtcaaattta ggataaaaat gtacataaga agccataaaa
     1741 ggactataag aagagtgaga aaatatatag cggtattctc tactttttac atcaaatctt
     1801 acttcaaaat catcttttac tttttcaatt tttttgatat ggataaaagg atgggaaaat
     1861 ttattaagct gtttttgaag atattctaaa tttacaaaat gatctccaca ttctacacta
     1921 gctacagcat agcttgcatg cactccttta tctgtacgag aagccatcaa aagaggtgaa
     1981 acaataccca aatgcgataa gaccccactt aaagcatctt gaacaccttt tttatgaggc
     2041 tgagtagcag aacctaaaaa agcagagcca tcataagaaa atataatttt tattttcatc
     2101 aataacgact caaaatcatt ttcttaaaac aataagccga aacaaataaa cttaaagaaa
     2161 aaattccaag gcaagccaaa attggaggtt gagaaaaaga acttaaaagt ccaaaatata
     2221 tagcaatcac tccaaacata cctaaataca catagccttt ttcataacga taagtaacca
     2281 aaccaaaaca aagcgcaaaa agcgtactag caagtggaaa caaggctata gttgtataaa
     2341 tcacaaattc tcttgctctt tgtggatttt cgtttaaatc attccagtat tcataaaatt
     2401 tctttgtttg aagattgtct gtattaaact gagtatttac tactaaagtg tcaaattctc
     2461 cactaaaaat actttgacct tgctcaaaat tatacatttt gccttgattt aagctaaaag
     2521 caaagctatc atcttttctt tgcacatgcg cttctttggc tatgataagt tgttctttat
     2581 catctgcttt atgtttaggg cgatacataa ttatgttttc atacttatca ctatcttgtt
     2641 tttctataaa aatcatccag tctaaaaatt tttgcccaaa ttctcctgtt ttgtagttaa
     2701 atttcacttg agtgctttta tagtttacaa agttatcctg aagttcaaat actataggta
     2761 tcattaccaa agccacaaca agcataaaag cactaatcaa gcttgcaatt ttaaggaaaa
     2821 attttgccaa aatcattggt gaaaatccca aagtaaaaag tactatgctt tcattttcct
     2881 tagaaagcct aaacaaagcc aaagttaaag aaataaaaaa agatataggc aaggtaaaaa
     2941 ttaaaattct aggcaacata aacccataaa gctttaaaag atccaaaaaa ctaatctcta
     3001 tgcttgaagt aagttttgca agttgaataa aaaacaccat agatacaata gcaaaaagta
     3061 cgaaaaatat agacaaattc gtacttaaaa attgatttaa aacatatctt aaactaagct
     3121 tcattagaat aatcctaagt ttttataaaa taaaactgcc acaaaagcga tatttaaaaa
     3181 gggtatcata gcaagttctt gctcttttat tgctttaatt ttaaaaaaaa taaaaaaagg
     3241 caaagttaaa atagaagcta taagtaatac taaaaatcca tactcaaaac ctaaaattcc
     3301 acctatacaa gacataatga taatatcagc atcacccaaa ttttctaaaa tttcatcttt
     3361 ttttcggaaa ttcattagaa aaaaaaccaa actttttaat aaaaaaacaa atcctccaaa
     3421 actaaaagca tttagcaaaa aacctccgct aaactcttta aaaatcaaaa aatgtaaaat
     3481 ttcactttcc ctaaaggcgt aaaaaaaagc aaataaaaaa gcgctccaaa gtaaaatttg
     3541 tggtacggct ttgagtttaa tatcaattaa agaaagcaag aaaagattaa ataaaaatag
     3601 agataaaaat aaaaaatcat aaaaattttg acttaaagaa taagccaaaa taagcaaaat
     3661 tatgcctaaa atttcattga ttaacaaaga aataggcaaa tgacatttgc aagtttgaca
     3721 ttttgctttt aaaaaaatat aagaaaaaat aggaataatt tcatagtatt ttaattttgt
     3781 atcgcaagaa aaacaaaaag agcgcgagat aaaaaagggc tttttttcaa ttatcctact
     3841 tgccaaactt gtgcaaaaag aacccaaaca agcccctaga attattatga aaaatatcat
     3901 tttccaaaag ttctttctct atttctaaat tctttaataa tccttttaaa ttctctcttg
     3961 gtaagagatg gaaataaagt ttcactaaaa taaatttcag catatgaaca ctgccaaagt
     4021 aagaaatttg aaagcctttt ggcatttcca acgcgaagca tcaaatccac atctaaaggt
     4081 aaatctaaat tttgcgttaa attttcttca tttagctcaa gttttttttc aatcacacgc
     4141 ttagcagctc ttataatttc atctcttgca ccataactta tagccaaatt aacacaaagt
     4201 gcgtcacaat gctttgtttt ttcttcaact aaggtaattt tttctcttac tttatcttcc
     4261 aaacgcgata aatcacctat agctcttaaa cgcacattat ttttttcaaa tttttctaaa
     4321 gcttcatcta aacaacgatc taaaagttca aaaataaaat caatttcatc tttagggcgc
     4381 ttccaatttt ccgtactaaa agcaaaaagg cttaaatttg aaatattttc ctccatgcaa
     4441 acttccatca atttttgcat agttttgact ccttgggaat atccaagttt tgccaaaaaa
     4501 cccttagctc tagcccagcg cctattgcca tccataacaa cagcaaggtg ttttaattca
     4561 ttcatttttc atcctttaaa atcaaaaagc cttttaaaaa caaacaaagg ttcaatcttg
     4621 ttttcttgcg atacattaaa atctaaatgt tcatttaaaa atttttgcac cttagcaaaa
     4681 ggtgtaaaaa cactaatgcc ttgcgagtct attaaaattt tcaaagctcc aaaaacacta
     4741 aaatataagt aaatttctaa atattttgct cttttacgca tttgaaataa gcaagattta
     4801 ttttcaaaga taaaaggaat atgataaata ttttcaaaac ttgcaaaaag catttctttt
     4861 aatatctgat aacgctctat atctttacaa tctaaaagat tttgtatgat aaatttttta
     4921 taagaaattt tatcctctaa aatagcgatt atcaaagcca atccctcttc aaaaggtttg
     4981 aaattaggac gctttgaaag atgtttaaat tgtataactc caccattttg catataaagt
     5041 tcggctaaat attcagcacc aatttcaagc tctatcatgc ttttggtttg aatctttttg
     5101 tgatttaaca aaagcgtata atgtccataa cctgatttag ccaaaacttt catttgtata
     5161 ggcaaggtag aattaatcat actcataatt tttcacacca ttttactaat tcaaatgcca
     5221 atttttcttt gctttgcaaa gtgcttttat tttcattgtt taaagtgata aaataaagtt
     5281 cattttgatc acttccaaaa taattttttt gatcaatgat attaagacaa accatatcaa
     5341 gttgcttatc ttttaaagat tttttcgcat tttctaaggc attttgagaa tcaaattcca
     5401 tcttaaaacc tatctttttg ccttgaaatt tacaagtttt aagcaaatct tcatttaaag
     5461 atagatgtaa atttaaaccc tgcaaatgct catttttttt aatttttcct tttacacttt
     5521 gtgggataaa atcactcact gcagctgtca taatcaaaaa gtcatgactt aaatttttat
     5581 ccaaaagctc ctttagatcc ttagaacttt caaatttgca aagctcataa ggcgtatcaa
     5641 attccacaga gcttaaaagt tttaccctag ctcctaaaaa ataaaaagca tcagctatgg
     5701 cctttgccat ttttccgctt gaaaaattac tcacacaacg cacatcatcg attctttccc
     5761 ttgtgccacc acctgtgata actacgcttt tattgcacca aaacttttct tttaaaagct
     5821 ctcttttggt gatattaaaa atatccttaa cttcagctaa ggctcctacg ccttcatctt
     5881 tacaagctaa aactttacaa ataggttcta taatcaaagc tttattttct ttaagtatct
     5941 ttaaagaatt ttgcgtactg aaatgatgaa acatatttgt atttgccgca ggagcaatga
     6001 taagaggttt atttgctgcg attaaggttt ggataaaaag attatccgct ataccaaaag
     6061 caagtttatt gatagaatta acacttgcag gagcaaataa aacaagatct acatccttgc
     6121 taaaagctat gtgattgttt gaattttgcc aactttcatt ttcctcgcat aaaatctcat
     6181 cagccaaggc ttcaaaactc attttgctag caaattttaa caaactatta gaaagcaaaa
     6241 ctttcaccct aaagccttct tttttaaaca aagaaataag ctcgtaagat ttataaaaag
     6301 ctatactgcc actaatggct aaaagtatgg ttttcatttt tgaaatttct tgtaataata
     6361 atcttttatc atcttatgct ctgctctatt gataaacaaa gcaccttttt ctacattgac
     6421 acttactgtg cttcctgctg ctatgatcac ttcatcttcg atttttacag gtgcgataaa
     6481 ttgcgtatcc gaacctacaa aaacattttt tcctatgatg gttttatgct tttttacccc
     6541 atcataatta catgtaatag tcccacagcc tatattggtt ccactatcta tctcacaatc
     6601 tcccaaatag ctcaaatgcc ctgcttttac ggtatttaac tttgcatttt tgcattctac
     6661 aaaatttcct atatgagtgt tttttaactc acaatttgga cgcaaatgtg ccaaaggccc
     6721 cacatcgcta ttttctacaa tggaattttc tatcacgctt gaacttttaa tgatagagtt
     6781 tataatctta cttttaccct ctatccttac attttcatat acttcgcatt cacccataaa
     6841 ttcaacatct gtacctataa aagtgctttg cggtaaatga aaaatcacac cctgttgcat
     6901 ccagtatttt ttaatttttt cttgcatgaa attttcagct atactgagtt caaatttatc
     6961 attgatcccc ataaattcat cttcatctac aaaaaccgct ttaatcatca catctttttc
     7021 ttttgctagt tttacaatgt cggttaaata atactctttt gccgcattat tgttatcaat
     7081 caaaggtaaa agctctttta aaagcctaga gtcaatcaca taaaccccag cattgcaagt
     7141 atttatctct ttttcttgtg tatttgcatc tttaaattca acaatttttt caacgctatc
     7201 gttttttatc accactctgc cataactttt aggatctctt gctttaaaaa ctgctagatt
     7261 taattttgca ttattactca acaaagcttc caaacttgtt tgctcaacca aaggcatatc
     7321 gccacaaaga atcaacactc tttcattttt aggctcaaac ccccttaaag ctcccgcagt
     7381 tcctggataa ttttgcaagt cttgctctaa aatttgtgtt tttggaaaat attctaaaat
     7441 ttctttttca acgcgttctt tttgatgcga taaaactaca cttacatcat cacttaaagc
     7501 aaaagccttt tttaaaatgt gtaaaatcat acttttttga caaagctctt gcaaaacctt
     7561 tggcttttgt gatttcattc tagtgcctaa tcctgccgct aaaatcaaaa tagaagtttt
     7621 cattttttac ctttgttatt aagaaatcta aaagactatt ttagcagttt aaagttaaaa
     7681 tcctaatacc cttaaactag tttttagtca tcaaaagata aaatttaaat ttctttaata
     7741 aaaaacaaaa aaaaggtttt taaattttga aaaaaatatt attattttta cttttaagca
     7801 tgagcttatt tgctgctgaa gcaactatcc ctacagtaaa tttaagctta agtgcaccca
     7861 atacacctaa tcagcttgtt actactttaa atatagtgat tgttttaacc atacttgcgc
     7921 tcgctccaag tatagttttt gttatgactt ctttcttgcg tcttattgtg gtattttcat
     7981 ttttgcgaca agctatgggg acgcaaagta tgccacctaa cactatttta gtaaccttgg
     8041 ctttaatttt aacttttttt atcatggaac ctgtagctac aaaatcctat aatgaaggta
     8101 taaaacctta tttagcagaa aaaataggct atgaagaggc ttttataaaa ggagcaaagc
     8161 cttttaaaga ttttatgctt aaaaatactc gagaaaaaga tttagccctt ttttatcgca
     8221 tacgcaatct acccaatccc aaaaccatag atgatgttcc ccttacagtt ttagttcctg
     8281 cttttatgat ttcagagctt aaaaccgctt ttgaaatagg gtttttaatc tacctaccct
     8341 ttttagtcat agatatggtt gtaagctcag ttttaatggc tatgggtatg atgatgctac
     8401 ctcctactat gatctcttta ccttttaaac tcttgatttt tgtattagtg gatggatgga
     8461 atttgctagt gcaaaggctt gtggaaagct ttgtaactta agaaggaaaa tccttcttag
     8521 aaaaagaatt ctaaattatt ctttttaaaa gtatctttaa catctttaag atatttttct
     8581 cctaaagaat caaaaagccc atcttttttg ctttctgcaa taaattcatc aagctctttt
     8641 ttaagttctg cattgccttt ttgtactgct ataccccaaa actcaggatt ttcttgaaaa
     8701 ggcaccaaaa tggctctagt tgtatcttga tgtttttgcc aagtgcgata aatcgtaagt
     8761 tgatcataaa aaaatccatc agccttacct tgaatcacct ccaaaatagc agcattttct
     8821 ttatcaaata aattaatagt tgcatttttt aaatttttaa ccgcatataa atgtcctgta
     8881 gagccacgct ttaaagccaa aactttgccc tttttatcta aatctttgat atttgtaata
     8941 tcagagttca aaggagttaa aatagccaaa tttgccttag cataaggaat gctaaaatcc
     9001 accactttct ttctctcatc ggtaattgtc atagaagaca tgataagatc tatcttggct
     9061 gtttttaaag caggtatcaa accatcccaa gcgatatttt ttactacaag tttatagccg
     9121 tttttctttg caaaagcttc taaaaaatcc acactaattc cacttgcttt gcctgtttta
     9181 tcgctcattt caaaaggcgg atatccaagc tccattccta caaccaaatc ttttgcactc
     9241 aaatttaaag caaaaaaaga gataaaaatc aaaataattt ttttcataat ttcctttcaa
     9301 aattttttgt aaaaaaatta tactaatttt atcttatttt gttattagca atttgtttca
     9361 aacttaaaaa attaaaactt ctaa
//
LOCUS       DAEBKH010000058         9382 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.058, whole genome shotgun sequence.
ACCESSION   DAEBKH010000058 DAEBKH010000000
VERSION     DAEBKH010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9382)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9382)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9382
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.058"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            187..789
                     /locus_tag="KIL20_000951"
     CDS             187..789
                     /locus_tag="KIL20_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HBD2720988.1"
                     /translation="MKRNEHNIALIKNPNFNALIDTGFLDTIDTLKEKLHTHKTDFKD
                     ITHIILTRAHPDHIGTLMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTLLKLKNIE
                     FINHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIPKPKIAIK
                     FDIDQNEAIQTRKKLLKEFKERKLKVIGTYVPFIKPKFLD"
     gene            877..1095
                     /gene="infA"
                     /locus_tag="KIL20_000952"
     CDS             877..1095
                     /gene="infA"
                     /locus_tag="KIL20_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HBD2720989.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            1267..1380
                     /gene="rpmJ"
                     /locus_tag="KIL20_000953"
     CDS             1267..1380
                     /gene="rpmJ"
                     /locus_tag="KIL20_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HBD2720990.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            1383..1748
                     /gene="rpsM"
                     /locus_tag="KIL20_000954"
     CDS             1383..1748
                     /gene="rpsM"
                     /locus_tag="KIL20_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HBD2720991.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            1758..2150
                     /gene="rpsK"
                     /locus_tag="KIL20_000955"
     CDS             1758..2150
                     /gene="rpsK"
                     /locus_tag="KIL20_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HBD2720992.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            2178..2804
                     /gene="rpsD"
                     /locus_tag="KIL20_000956"
     CDS             2178..2804
                     /gene="rpsD"
                     /locus_tag="KIL20_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HBD2720993.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            2817..3830
                     /locus_tag="KIL20_000957"
     CDS             2817..3830
                     /locus_tag="KIL20_000957"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HBD2720994.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDAYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            3834..4187
                     /gene="rplQ"
                     /locus_tag="KIL20_000958"
     CDS             3834..4187
                     /gene="rplQ"
                     /locus_tag="KIL20_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HBD2720995.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFALLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            4360..5259
                     /gene="hisG"
                     /locus_tag="KIL20_000959"
     CDS             4360..5259
                     /gene="hisG"
                     /locus_tag="KIL20_000959"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HBD2720996.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCMLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            5267..6553
                     /gene="hisD"
                     /locus_tag="KIL20_000960"
     CDS             5267..6553
                     /gene="hisD"
                     /locus_tag="KIL20_000960"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HBD2720997.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAINAKDEISKIVSSIIKEVQEKG
                     DEALIEQALKFDKAEISKIKITQKEITQASNRLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALAYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGATIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KTSDEVQSQLEFLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            6550..7608
                     /gene="hisB"
                     /locus_tag="KIL20_000961"
     CDS             6550..7608
                     /gene="hisB"
                     /locus_tag="KIL20_000961"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HBD2720998.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDVIPTLLKLK
                     NFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVRGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKISIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGISLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            7605..8192
                     /gene="hisH"
                     /locus_tag="KIL20_000962"
     CDS             7605..8192
                     /gene="hisH"
                     /locus_tag="KIL20_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HBD2720999.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLKQFNLINFIKNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKVKEGFTFPHMGWNQVHSSHALFKGLEGAYFYFVHSYCVGLGEYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            8189..8920
                     /gene="hisA"
                     /locus_tag="KIL20_000963"
     CDS             8189..8920
                     /gene="hisA"
                     /locus_tag="KIL20_000963"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HBD2721000.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQLALIEKLAKEVSVNLQVGGGIRSKAEVRALLDCGVKKVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNARLYKLIHEIFPHICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLAN"
     gene            8905..>9382
                     /locus_tag="KIL20_000964"
     CDS             8905..>9382
                     /locus_tag="KIL20_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrgA protein"
                     /protein_id="HBD2721001.1"
                     /translation="MSSKLSYKELALEILKQSDKPLSANEIWQKALEKGLDKKLSSIG
                     QTPIATLGARIYVDIKELQHNSLFIKASQKPRTFWLKERENELLKLDNKNEITNEKQE
                     KNKFHERDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPY"
BASE COUNT         3575 a         1300 c         1754 g         2753 t
ORIGIN      
        1 tttataatca ctcttttaaa aaccaatctt tattttttag aagaaaaaat cacaagcaaa
       61 agttcaaatc aaacccatat aatctcactt aaacaatctg atgatgaatt tttaaattta
      121 ttattttctt ttttagtgcc acaaagcgat gaagataaga attttataga aaaaactcgc
      181 acaaaaatca aaagaaatga gcataatatt gctctgataa aaaatccaaa ttttaatgct
      241 ttaatagaca cagggttttt agatactatt gacacattaa aagaaaaatt gcatacccac
      301 aaaaccgatt ttaaagatat cactcatatt atcttaacac gcgcgcatcc tgatcatata
      361 ggaactttaa tgagcgaaga aaatcttttt ccaaaagctc aaattttaat cgataaaaaa
      421 gaatatgatt tttggatcaa aagcgataga caagaaatta aaaacacctt gcttaaactt
      481 aaaaatatag aatttattaa ccactctaaa gatttgatct ttcaaaattc aggcattaaa
      541 gccatacctg cttacgggca taccccaggt caaaatgcta tcataattga cgataaaata
      601 gtcttttggg gagatttact tcatctttat gatatacaaa tcccaaaacc taaaatcgct
      661 ataaaatttg atatagatca aaatgaggct atacaaacaa ggaaaaaact acttaaagaa
      721 tttaaagaaa gaaaactcaa agttataggg acttatgtgc cttttatcaa acctaaattt
      781 ttagattaat tacttaaaaa ttactaaaaa ttaagtaaaa attttaataa tttttgctaa
      841 aattatagcc tttttatttc atgaaaggag aaaattttgg caaaagatga tgtaattgaa
      901 attgatggca ccgtacttga agcattgcct aatgcaaatt tcaaggttga acttgacaac
      961 aaacatgtaa ttttatgtca tattgcagga aaaatgcgta tgcattatat aagaataatg
     1021 ccaggtgata aagtaaaagt agaacttaca ccttatagcc ttgataaagg gcgtataact
     1081 tttagatata aataatctaa gttatttaaa agctaatttt agataaaatt agagtttttg
     1141 cgacaaatta catcgaacta tatgaagaag tatttttaaa atccaccact tattttgaaa
     1201 atagttggtt attcataaaa cctgatgtag tcgtaaatca agtggaattc attcaaggag
     1261 acgctcatga aagtgagacc atcggttaaa aagatgtgcg acaagtgcaa agtagttcgc
     1321 cgtaaaggcg tggttcgcat tatttgcgaa aatccaaaac ataaacaaag acaaggataa
     1381 acatggctcg tattgcaggt gtggatttac caaagaaaaa aagaattgag tatggactaa
     1441 cctatattta tggtatagga cttttcactt caagaaaaat tctagataaa gtaggaattt
     1501 cttatgataa aagagttcat gagttaagtg aagatgaagc agcagctatc cgtaaagaaa
     1561 ttcaagaaaa ctatatggtt gaaggggatt tgagaaaaca agttgctatg gatattaaag
     1621 cacttatgga tttaggaagc tttagaggtt taagacacag aaaaggctta ccagttcgcg
     1681 gacaaaaaac aaaaacaaac gcaagaacta gaaaaggtaa gagaaaaact gttggtgcaa
     1741 aatcataagg ataaatcatg gcaaaaagaa aaatcgtaaa gaaaaaagta gttaaaaaaa
     1801 atatagcaaa aggtattgtt tatatcagtg cgacttttaa caatactatg gttacagtaa
     1861 ctgatgaaat gggaaatgct atcgcttgga gtagtgcagg tggtttagga tttaaaggtt
     1921 ctaaaaaatc aactccttat gcagcacaac aagcagtaga agacgcttta aataaagcaa
     1981 aagaacacgg aattaaagaa gtaggcatta aagtacaagg accaggaagc ggtagagaaa
     2041 ctgctgttaa gagtgtaggt gctatggaag gaatcaaagt aactttctta aaagatatca
     2101 ctccattagc tcacaatggt tgcagaccgc ctaagcgtcg tcgtgtctaa gatataagaa
     2161 aaatttagga gaatattatg gcaagatata gaggaccagt agaaaaatta gaaagacgct
     2221 ttggtgttag cttagcatta aaaggagaaa gaagactagc tggcaaaagt gcactagata
     2281 aacgccctta tgcaccagga caacacggag caagaaaagg taaaattagt gagtatggac
     2341 ttcaattaag agaaaaacaa aaagctaaat ttatgtatgg agtaagcgaa aagcaattcc
     2401 gtcgtttatt tgctgaagca gcaagaagag aaggaaatac aggggtatta cttatccaac
     2461 ttttagaaca aagattagac aatgtagtat atagaatggg ttttgctaca acacgtcgtt
     2521 ttgcaagaca acttgtaaca catggacatg ttttagtaaa tggtaaaaga gtggatattc
     2581 ctagctttag agtagaagca ggtgctaaaa tcgaaattat cgaaaaaagc aaaaacaatc
     2641 ctcaaattac aagagctatc gaacttacag cacaaactgg aatcgttgct tgggttgatg
     2701 ttgaaaaaga taaaagattt ggaattttca caagaaaacc tgaaagagaa gaagttgtca
     2761 ttccggttga ggaaagattt atcgttgagc tttactctaa gtaatagggg ctaaatatga
     2821 gaaatattac aacatctgct tatacgccaa cagaatttac aatagaaaac attagtgata
     2881 ctgtggctaa aatcagtgct tggccttttg agatcggcta tggaatcacc ctagcccatc
     2941 ctttacgccg tttactttac actagcacca taggatatgc tccaactgcg attcatattg
     3001 atggcgtagc tcatgaattt gatagcatgc gtggtatgct tgaagatgta gcacttttta
     3061 tcattaatct aaaaaaacta cgctttaaaa ttaaaggcga atcaaataaa gaaatagtag
     3121 aatttagctt taaaggctca aaagaaattt acggcaaaga tctaaataat gatcaagtag
     3181 aagtagtaaa taaagacgcc tatctagcaa caatcaacga agatgctgaa ctcaaattca
     3241 cattgatcgt tgaaaaaggt attggctatg taccaagcga agaaattaaa gagcttataa
     3301 atgatcctaa atttatagct ttagatgctt tctttacacc tgtaagagag gcaacctatg
     3361 atattgaaaa agttttattt gaagataatc ctgattatga aaaagtggtt ttaaccgtaa
     3421 caactgatgg acaaatcact ccaaatgaag cttttcaaaa tgctctagaa gctatgtata
     3481 aacaattatc agtatttgat aaaattacca atgttagaag tgtaattaaa aatcaagcaa
     3541 caagcaatga actagaaaat actaaattat tgcaaaacat tacagattta aatttaagtg
     3601 ctagaagtta taattgtctt gaaaaagcag gagtagttta cataggtgag cttgctttga
     3661 tgagtgtaag tgaacttgca gggcttaaaa atttaggtaa aaaatctctt gatgaaatta
     3721 aaaacatcat ggaaagcata ggttttcctg tgggaacttc taagcttagc gataataaag
     3781 aaatacttaa aaataaaatc gcagaattaa aagcacaaaa cgaaggataa agaatgagac
     3841 ataaacatgg atatagaaaa cttggcagaa cttcatctca tcgtgctgcc ttattaaaaa
     3901 atttaactat agctttagta aatagcggaa aaatcgaaac cactctacca aaagctaaag
     3961 aattaagagg ttatgtagaa agattgatta ctagagcaag acttggagat tttaacgctc
     4021 atagagcagt ttttgcttta ttacaagata aaaacgctac caataaacta gtaactgaaa
     4081 ttgctccaaa attcaaagat cgcaatggcg gatatacaag aatcatcaaa acaagaattc
     4141 gccgtggtga tgccgctgaa atggctttca tcgaatttgt agcttaatca aatcctagct
     4201 tttgctagga ttaatacttc aattaaatat cctaaaaata aaaagtttta aataattatt
     4261 ttaaataaaa ttaaatttat ttattttcta aaacccttgc taaaaattca actacttatg
     4321 ctaatataag tttttaattt ttaatttcaa ggatatgtta tgcaagaaaa cactcgttta
     4381 cgcattgcga tacaaaaatc aggtagactt tcaaaagaat ccatagagct tctttcagaa
     4441 tgtggtgtta aaatgcatat ccatgaacaa agtttgatcg ctttttctac aaatttaccc
     4501 atagatattt tacgcgttag agatgatgat atccctgggc ttatttttga tggggttgta
     4561 gatttaggca ttatagggga aaatgtttta gaagaaaatg aacttgaacg ccagtcttta
     4621 ggagaaaatc caagctataa gcttttaaaa aagctagatt ttggatattg ccgtctttct
     4681 cttgccttac ctcaagaaaa taaatttcaa aatttgaaag attttgaagg cttaaggata
     4741 gctacttctt atccacaact tttaaagcgt tttatgaaag aaaatgggat taattataaa
     4801 aattgtatgc ttacaggttc tgttgaagta gcccctaggg caaatttagc cgatgcgatt
     4861 tgcgatcttg tttcaagcgg ggcaacttta caagcaaaca atcttaaaga agttaaagtc
     4921 atttatgaat ctcgtgcttg tttgattcag aaagaaaatg ctttaagtaa agaaaaacaa
     4981 gccttagtgg ataaaattat gttgcgtgta gcaggagtaa tgcaagcaag agaatctaaa
     5041 tacattatgc ttcatgctcc aaaagaaaag cttgataaaa ttcaagccct acttccagga
     5101 gttgaaagac cgactatctt acctttagca cacgatgaaa aaaatgtagc tttacatatg
     5161 gtaagtaaag aaaatctttt ttgggaaacc atggaggctt taaaagaaga aggtgcgagt
     5221 tcgattttag ttctgcctat agaaaaaatg ttaaagtgag taaaaaatgc aaattttagt
     5281 atatgataat ttggatgaaa aacaaaaaga agaagcgtta aaacgccctg ctataaatgc
     5341 gaaagatgaa atttcaaaaa tagtaagttc tatcattaaa gaagtgcaag aaaaaggcga
     5401 tgaagctttg atagaacaag ctttgaaatt tgataaggct gaaatttcaa agattaaaat
     5461 cactcaaaaa gaaatcactc aagcaagcaa tcgtttagat aaagatttac aagaagctat
     5521 tttagtggct tatgaaaata tcaaaaaatt tcacgaagcc caaatcccac atgaaatcgc
     5581 tcttgaaact acaaaaggcg ttaaatgtga agttttaaca cgccctatag aaaaagtagg
     5641 actttacata ccagggggtt tggcaccttt gttttcaacg gttttaatgc tagctattcc
     5701 tgcaaaaatt gcaggttgtg aaaaaatcgt tttagcaagt cctgcaaaaa tcaatgatgc
     5761 tgtgcttttt tgtgctaagc tttgtggcgt ggatgaaatt tatcaaatgg gcggtgcagg
     5821 agctatagca gctttggctt acggtaccca aagtgtttta aaggtggata aaatttttgg
     5881 cccaggaaat gcctttgtaa ccgaagcaaa acgccaagta agtagcgata taaacggagc
     5941 gactattgat atgcaagcag gacctagtga agttttagta atagctgatg atttggctaa
     6001 tgaaaaattt gtagctagtg atttgctttc acaagctgaa catggtgcag attctcaagt
     6061 gattttggtg tgtttaagtc aagattttgc taaaaaaaca agcgatgaag tccaaagtca
     6121 attagaattt ttacctcgca aagaacttgc aagcaaaagc attgctaatt cacgcattat
     6181 catagctaaa gatttaaatc aagccttaga aatttcaaat ctttatgccc ctgaacattt
     6241 gatcatacaa actcaaaatc cacgagaact tttaaaaggt gtaaaacacg caggatcggt
     6301 atttttagga gcttattccc cagagtctat gggtgattat gcaagtggga caaatcatgt
     6361 tttacctact tatggactta ctaaaacgca ttctagttta ggtttggcag attttagtaa
     6421 aagaatgacc gttcaagaat taagtaaaga aggcttttta gctttgggta aaagtgttga
     6481 aattttagca caaaatgagc atttagacgc acacaaaaat gcagtaactt ttcgtttaga
     6541 gagcttaaaa tgagtcaaaa aatccttttt atagatagag acggcacttt aatagaggag
     6601 ccaaaaagcg attttcaaat cgatactctt gaaaaattgc gttttgaaaa agatgttatt
     6661 cctactcttt taaaattaaa aaattttgga tttaaatttg tcatggtaag caatcaagat
     6721 ggtcttggaa cgccaagttt tccaaaggaa aattttgaaa tcgctcatga aaaaatgctt
     6781 gatattttaa aaagttgcgg tatagaattt caagatattt ttatttgtcc gcattttgaa
     6841 aatgaaaatt gtgcttgtag aaaacctaaa accgctatgt tagaagagta tatcaaacac
     6901 gaactttacg ataaagaaca aagttttgtt atcggagatc gtgagagtga tatgatctta
     6961 gcttcaaatt taggcgtgcg tggtttaaaa tacggcgaac tttcttggaa agaaatagaa
     7021 aatgaaattt taagttcttt tagaagtgcg agttatcaaa gaactactaa agaaacagat
     7081 ataaaagtaa aagtgtgctt aaatgggggt aagattagca ttaaaacagg cattgatttt
     7141 tttgatcaca tgttagagca aatcgctgta catggaggta tagggcttga aatttcttgc
     7201 aaaggggatt tagaaatcga tgagcatcat agcgttgaag atgtagcctt agcacttgga
     7261 gcttgtatca aaaaagcctt aggggataaa atcggcattg caagatatgg ttttgcttta
     7321 cctatggatg agtgtttggc aagttgtgcg atggattttt gcaatcgtcc tcatttagtc
     7381 tataaagcca aatttaaaaa atctcattta ggggctttaa gcacagaaat gatcgagcac
     7441 tttttttatt ctttaagcta tgctatgggt ataagtttac atttaaaagt taaaggcaaa
     7501 aacgatcatc ataaagccga agggcttttt aaagcctttg caaaagcttt gaaaatggca
     7561 gtgaaaatag aaagtgaaaa tttagccagc tctaaaggag tgatatgaaa atcatcatca
     7621 tcgatacagc ctgtgcgaat ttagcatctt tgaaattttg tctggataga ttaggtttta
     7681 atgcaactat cagtagggat ttaaaagaac ttgaaagtgc ggataagctt tttttacctg
     7741 gagtgggtac cgcaaaagaa gcgatgaaaa atttaaaaca atttaatctt attaatttta
     7801 ttaaaaatac caaaaaacct ttgcttggta tttgtttagg tatgcaaatt ttaggaaatt
     7861 tttccgaaga attaaatcaa gaaactttaa aacttataga ttttacaacc caaaaattta
     7921 aagttaaaga aggctttact tttccacata tgggatggaa tcaagttcat agctctcatg
     7981 ctttgtttaa aggtttagaa ggggcttatt tttattttgt gcatagttat tgtgtaggac
     8041 ttggggaata cactatagca gattgtgagt attcgcaaaa atttagcgca agtgtaatga
     8101 aagataattt ttacggggtg caatttcacc ctgaaagaag cagtgaagcg ggggaaattt
     8161 taatttcaaa ttttattaag gatataggat gactcaaatc atacccgcac tcgatcttat
     8221 agatggcgaa gtggtgcgtc ttgtaaaagg ggattatgaa caaaaaaaag tatacaaata
     8281 caatccctta aagaaattca aagaatacga aaaagcagga gcgaaagaac ttcatcttgt
     8341 agatcttaca ggtgcaaaag atcctagcaa aagacaactt gctttgatag aaaaattagc
     8401 caaagaagtc agtgtcaatt tgcaagtagg tggaggtata cgctctaaag cagaagttag
     8461 agctttgctt gattgtggag taaaaaaagt agttatagga tctatggcaa ttaaagatgc
     8521 gactttatgt cttgaaattt taaaagaatt tggtagtgaa gctatagttt tagccttaga
     8581 tacgatttta aaagaagatt atgttgtggc tgtaaatgct tggcaagaag caagcgataa
     8641 aaagcttatg gaagttttag atttttatag caataaaggc ttaaaacaca tactttgcac
     8701 agatatttca aaagatggca ccatgcaagg agtaaatgca agactttata aacttatcca
     8761 tgaaattttt cctcatattt gcattcaggc aagtggtgga gtagcaagct taaaagacct
     8821 tgaaaactta aaaggaattt gcagtggggt tatcgtagga aaagctttat tagacggagt
     8881 ttttagtgta gaagaaggga taagatgtct agcaaattaa gttacaaaga acttgcttta
     8941 gaaattttaa aacaaagcga taagccttta agtgctaatg aaatttggca aaaagctctt
     9001 gaaaaaggct tagataaaaa gctttctagt ataggacaaa ctccaattgc tactttaggg
     9061 gctaggatat atgttgatat aaaagaattg caacacaatt ctttatttat caaagcttcc
     9121 caaaaaccca gaactttttg gttaaaagaa agagaaaatg aacttttaaa gcttgataat
     9181 aaaaatgaaa ttaccaatga aaaacaagaa aaaaataaat ttcatgaaag agatttacac
     9241 cccttgcttg taaaattttt atatgaaaat ttagatttta atttaaattg caaaacaatt
     9301 taccacgaac aaagcaaaaa gggtaagggc ggggaagata agtggaatta tcctgatatt
     9361 gtaggggttt attttcctta cg
//
LOCUS       DAEBKH010000059         9376 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.059, whole genome shotgun sequence.
ACCESSION   DAEBKH010000059 DAEBKH010000000
VERSION     DAEBKH010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9376
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.059"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            59..3547
                     /locus_tag="KIL20_000965"
     CDS             59..3547
                     /locus_tag="KIL20_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HBD2721002.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANASVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFDYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYEYLKKLFSFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQKGWELPTFYKKIDTDSNYNKMLDFILEGDNHKYIN
                     IGIASHNIFEIAYAYTRISEAGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDENWKAQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYESKKFSNESDTDFILAQNRAWAKEIKAKYENLKDYDVYPVIG
                     ELDFKAENLNVLEVKDKIEDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVK
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDAGI
                     PKDALIFLPSKGSDISKYLLVDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYNDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLENNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGVKKSAIGLGRKVGIYNYITQFLEIKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFMNDLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVILGANIANIDLSISYDEQDISMIERIVQSIGAKVLFLKENK
                     ENFIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKAL
                     SISFHRYGNLGIRAIS"
     gene            3565..5034
                     /gene="putP"
                     /locus_tag="KIL20_000966"
     CDS             3565..5034
                     /gene="putP"
                     /locus_tag="KIL20_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HBD2721003.1"
                     /translation="MEVVQINTPIAVMFVAYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGVISIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHVVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLAASVVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(5050..5277)
                     /gene="yedF"
                     /locus_tag="KIL20_000967"
     CDS             complement(5050..5277)
                     /gene="yedF"
                     /locus_tag="KIL20_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HBD2721004.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLQSGEILEVLCDCPQSI
                     NSIPQDAKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(5281..6489)
                     /gene="yedE"
                     /locus_tag="KIL20_000968"
     CDS             complement(5281..6489)
                     /gene="yedE"
                     /locus_tag="KIL20_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HBD2721005.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWAYRAFEGQSHFMIV
                     GIANIIGTMILALSYDFLPKAFKEGIKINLLTEFGNLNGFFINLILFILIFAFVVFYK
                     KYFFKNQLKG"
     gene            6630..6727
                     /locus_tag="KIL20_000969"
     tRNA            6630..6727
                     /locus_tag="KIL20_000969"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6664..6666,aa:Sec,seq:tca)
     gene            6755..8005
                     /locus_tag="KIL20_000970"
     CDS             6755..8005
                     /locus_tag="KIL20_000970"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HBD2721006.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALMK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYATRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            8002..8430
                     /locus_tag="KIL20_000971"
     CDS             8002..8430
                     /locus_tag="KIL20_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HBD2721007.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEYEKAYELSRQEC
                     ENLGVLPKSGSIAELRSNLSMAQVGREALARAREKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            8423..8941
                     /locus_tag="KIL20_000972"
     CDS             8423..8941
                     /locus_tag="KIL20_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HBD2721008.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEEQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            9034..>9376
                     /locus_tag="KIL20_000973"
     CDS             9034..>9376
                     /locus_tag="KIL20_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HBD2721009.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVEND"
BASE COUNT         3363 a         1192 c         1770 g         3051 t
ORIGIN      
        1 atttttatct tatttatata ttatttatta aaatttattt tatcttagga gatacgaaat
       61 gatacaaaaa gctttagcct tagctgaaga attgcaagga caaatagaag ccaatatttc
      121 aaattctgaa aaagaatttc atgctaaaat gcaaaaactt cttaacaatc ccaaaaataa
      181 agttatgctt atagaacttt tagatcgttc ttttagatgc aaagataaaa atgcaagttt
      241 tgagcttata gaatatactt tgagtaaata tggcatagcg gattttttta gcacttttga
      301 aaaatttcta ctttttagct ttttaaattt tggcaaattt gctcctaatt taagtgtacc
      361 tttttttgtc aaacatttaa gagaagatac taaagctatg gttctagatg caaacgctag
      421 tgttttagag ccgcatatta aaaaaagaaa agagcaagat aaaattacct taaatgtgaa
      481 tttaatcggc gaagaggttt taggtgaagc tgagagtaaa tatcgtatgc aaaaatatga
      541 agaggcttta aaatcaagtt atatcactta tatttccata aaaattacta cgattttttc
      601 acaaattaat attatagatt ttgattattc caaagaagag gtagtaaaaa gactagatta
      661 tctttatgct ttagccttag aagaagagaa aaaacaaggt gtatctaaat ttatcaatct
      721 ggatatggaa gaatttagag atttagaact caccgttgca gcttttatgg aaagtgtggc
      781 caaatttgat attaaagcgg gcattgtttt gcaagcttat attcctgatt cttatgagta
      841 tcttaaaaaa cttttttctt tttcaaaaga gagggtttta aaaggtatga agcctattaa
      901 gatccgtttt gttaagggtg ctaatatgga aagtgaagaa accattgcat ctcaaaaagg
      961 ctgggaactt cctacttttt ataaaaaaat agatactgat agcaattata ataaaatgct
     1021 tgattttatt cttgaaggag ataatcataa atacatcaac ataggaattg caagtcataa
     1081 tatctttgag attgcttatg cttatacacg cataagtgaa gcgggtgctt tagattcttt
     1141 tacttttgaa atgcttgaag gtatgagttt gcaatgttct tatgaattat ctaaaatgca
     1201 tgatttaatc ctttatgctc cagtttgcga tgaagcacat tttaacaatg ccattgctta
     1261 tcttgtaaga cgccttgatg aaaatacaag tgaagataat tttatgcgtt attttttcaa
     1321 tcttaaagta ggagatgaaa attggaaggc tcaaaaagaa ctttttttaa aatctttaga
     1381 aggcataaaa acgcttgata atactacaca tcgtaagcaa gatagaaata aagaatcaaa
     1441 tatcataagt tcttatgaaa gtaaaaaatt tagcaacgaa agtgatacgg attttatttt
     1501 agcgcaaaat agagcatggg ctaaagaaat taaagctaaa tatgaaaatt taaaagatta
     1561 tgatgtttat cctgttatag gtgagcttga ttttaaagca gaaaatttaa atgttttaga
     1621 agttaaagat aagattgaag atagagtgat aggaaaggct tatttagccg gagaaaaaga
     1681 aatcaaacaa gctttagaag tagctaaaaa ttccaaattt acacaaaaaa gtcatgatga
     1741 aatttatcaa attttagcta aaagtgcaaa acttatgaga gaaagaagag gggatttgat
     1801 aggtttggca gctttagaag tgggcaaaac ctttttagag atcgatcctg aagtaagtga
     1861 ggctattgat tttatagagt tttatccgca ctctttagaa gagcttaaaa aacaaaatcc
     1921 aaaagttaaa ttcacaccta agggcatagg ggttaccata gctccttgga attttcctat
     1981 agggatttca gtgggcacca tagctgcacc actagctgca ggtaatgtgg tgatttacaa
     2041 accttcttca ctttcaactc taacaggtta tatgctttgt aagtgttttt gggatgcagg
     2101 tattccaaaa gacgctttga ttttcttacc ttcaaaagga agtgatattt ctaaatattt
     2161 acttgttgat gaagcgatta aattttcaat tcttacagga ggggaggata ctgcttatgc
     2221 tatgttaaaa gctaatccaa ccttgctttt aagtgctgaa acgggcggaa agaatgcgac
     2281 tatagtttct aaatttgctg atcgtgatag tgcgattaaa aatatcattc attctgcttt
     2341 tagcaatagt ggtcaaaaat gttcggctac ttctttgtta gtcttagaag aagaggttta
     2401 taatgatgaa gaatttaaaa agactttagt agatgctgca agttctatgg cagtgggcaa
     2461 tccttttgaa tttaaaaata aattgggtac tttggctgat aagccaagtt ctaaagttca
     2521 aaaggcctta gatgaattac aaccttatga agaatgggca ttaaaaccta agtttttaga
     2581 gaataatcct tatttgatga ctccaggtat aaaatatggc actaaaaagg gtgattttac
     2641 tcatatgaat gaactttttg taccgatttt aagtgtaatg aaggctaaag acttaaaaga
     2701 agctattgat atagtaaatt ccacaggtta tggtttaact gcaggttttg aaagcttaga
     2761 tgaaagagaa tgggagtatt ttcacactca tatagaagca ggaaatattt atatcaacaa
     2821 accaaccaca ggtgctatag tccttcgtca gccttttgga ggggttaaaa aatcagctat
     2881 aggtttgggt agaaaagtgg gaatttataa ttatatcact caatttttag agattaagca
     2941 agaagatttt gatgatcatt taattgaaga taaattttca aaaaaattag cacaaataga
     3001 tttaaaagaa gcacaagatt ttatgaacga tttaattaaa atgtctcaat cttatgctta
     3061 tcattataaa aatgagttta gtgtttcaaa agattatgtt aatatacgtg gagaagataa
     3121 tcttttttct tatactaaaa taaagaatat ggttttaaga ctttgtggaa atgaaagctt
     3181 aaaagatgtt ttaggggtga ttttaggtgc aaatattgca aatattgatc taagtatcag
     3241 ttatgatgag caagatatta gtatgataga acgaattgtt caaagtatag gagcaaaagt
     3301 attattttta aaagaaaata aagaaaattt tatcaagagt attaaagaat atgaaagagt
     3361 gcgttatttg gcaaagccag atgtaaatga tgagatttat aaagaggctg caaagcttgc
     3421 taaaatcatc ataagagaaa agccattgtt aaatggtcgt tttgaacttt taaattattt
     3481 taatgaaaaa gctttaagta tatcttttca tcgctatgga aatttaggca ttagagcaat
     3541 atcttaatga tcaaggagag attgatggaa gtagttcaaa ttaatacccc aatagcagtg
     3601 atgtttgtag cttatgcctt attgatgctt tatataggtt tttattttta taagcaaaat
     3661 aaaaattcag aagattattt tttaggtggg cgtactatgg ggcctgtgat atctgcactt
     3721 agcgcagggg cttctgatat gagtggttgg cttttaatgg gattaccagg agctttatat
     3781 gtaagtggct ttatagattc ttatattgca attggactta ctataggagc tagtttaaat
     3841 tggatttttg tggcaaaaag acttagaatt tataccagcg tgattgcaaa ttctttgact
     3901 attcctgatt attttgaaac tcgttttgat gatgataaac acatactacg cattgtatgt
     3961 gcggtggtaa ttttgatatt ttttaccttt tatgtttcat cagggcttgt aagtggagca
     4021 aaactttttg aaagtacttt tggtatcaga tatgattatg ctttaactac tggaacgatt
     4081 attattgttg cttatacttt tttaggtgga tataaggcag tttgttggac ggatatgata
     4141 caagggcttt taatgatgat ggctttaatc attgtgcctt tggttatgct ttatcattta
     4201 ggtggctttg gtgaagcgat gaatatagta agagaaataa agccacaagc tttatctatg
     4261 ggcgaaggag tgggagttat aagtattata tctgcacttg cttggggttt gggttatttt
     4321 ggtcaaccac atattttagt gcgttttatg tcgattcgtt ctactaaaga tattcctatg
     4381 gccactttta taggtattgc ttggatggcg gtttgtcttt taagtgcttg tatgataggt
     4441 attttgggta tagcttatgt gcataaattt gaattaagtt tgcaagatcc tgaaaagatt
     4501 ttcatcgtga tgtcgcagct tttatttaat ccttggatag caggtatttt actcagtgct
     4561 attttagcgg ctattatgag tacggcaagt tcacaattgc tggtttcaag ttctactata
     4621 gcggaagatt tttataaaaa gatttttaga gaagatgcgc caagtcatgt tgtattaaat
     4681 ttaggtaaat taggtgtttt actagtagct gtaatagcgt ttttgatttc tactgataaa
     4741 aactcaagtg ttttgagtat agtttcttat gcatgggctg gatttggagc ttcttttggt
     4801 tctgtaatgc ttttttcttt attttggagt aggatgacaa gagtaggagc gatcttaggt
     4861 atgataacag gagctgctac tgtggtactt tggaagaatt ttgcaaattc gggtctttat
     4921 gaaatagttc cagggttttt agcagcttcg gtggtgatta ttattgcaag tttatttaca
     4981 aatgtaagat ctggaactaa agcagcttat gaaaagatgt taaaagagct ttgagaacaa
     5041 aagccttttt taaggctttt gtattaaaaa tcttagcgtg ggtccacttt gatcgatttc
     5101 aagcacttta aaaccacggt tttttgcatc ttgaggtatg gaattgatac tttgtgggca
     5161 atcacaaagc acttccaaaa tttctccgct ttgaagctta ggtaagacat caagtgttgc
     5221 tatagcagga taaggacaag cttcaccttg taaatttaaa ctataagtaa ttttcactgt
     5281 ttatccttta agttgatttt taaagaagta ttttttgtaa aatactacaa aagcaaatat
     5341 taagatgaat aaaataaggt tgataaaaaa tccatttaaa ttgccaaatt cggttaaaag
     5401 attgattttt ataccttctt taaaagcctt tggtaaaaag tcataactta aagctaaaat
     5461 catagttcct attatattag caattcctac tatcataaaa tgactttgtc cttcaaaggc
     5521 acgataagcc caaccacact cacaacctcc ggcaaaaact atgccaaaac caaacaaaaa
     5581 tgctcccaca gctacagcag gagaaagttc tatgagtttg ctagtatgac cttgcaagat
     5641 aaaagcaaaa gcgattaaag aagcgataat catgccaatt aatgcgcctt ttatagcatt
     5701 atctctacca aataaaaata aatctctaaa gcaagaagta aaacaaattt gtcctctaga
     5761 aataacaaag ccaaaaacaa aaccaaaaat cagtgctaaa gctagaagac tttgtttgtt
     5821 ttgtgtgctg atattgccat ttgtaaaaac aagataaaac acccaaacta aaaaggctat
     5881 gaaaagcaat atgcctaagt taaaatatag ttttgtacgc aaactttgct tatttagcgg
     5941 caagttttct ttatttaccc gttctaattt agctttaggt ttaaaaaagg aagtgttgca
     6001 aattttcact cctagataaa ttcctaaaac cataaaaaca gtaaaaagcc aagtgtgtaa
     6061 agaaaaataa ggtaaacctg taaaaaaatt agctaaattg catccaaatg caagtcttgc
     6121 tccatatcct gaaagaattc cacctactat tgcttgaaaa attcttatat tgctagcagg
     6181 tagacgaaat ttgactttgt tagctaaaag tgcggctact aaacaaccta taaacatacc
     6241 tatgagcata ataccatcag ttcttgttaa aggggttcca tttaaatttt gcttttggta
     6301 ataagaatac ccatctaaat tcatacctaa aagttctaaa aattcaccac cccaacgcgt
     6361 catttctcca gtaacagccc aaacgccacc aaaaatccca aaatacactg cacttaaaat
     6421 tccaagtgca atcatagaac gggaattgtc ccaaaaattg attaaatatt tttgtttaaa
     6481 agaattcaaa gaaagatcct aaaaatgtaa tcatcaaaac ttgatgctaa aaaaagagtg
     6541 agattatagc ttaaatttaa catgaagtca aaaagaatat tgataaattt attttgtttt
     6601 tcattaaaaa tcgctataat tatcactttg gaagattagc gtatctggtg atcgccactg
     6661 acttcaaatc agatgaaagg atagttgact attctttggg gagttcgatt ctctcatctt
     6721 ctcgccaata ttaagtaaaa tcaaggaaat ttttatgagc aaagcagata ttattgtcgg
     6781 cattcaatgg ggcgatgaag gaaaaggtaa ggtagttgat aaattatgtg aaaattatga
     6841 ttttgtttgc agaagtgcag gtggacacaa tgcaggacat acgatttggg taaatggtgt
     6901 aagatatgcg cttcatctta tgccaagtgg agttttgcat ccaagatgta ttaatattat
     6961 cggaaatgga gttgtggttt ctcctgaagt attgattgct gaaatggctc aatttgaaaa
     7021 tttaaaaggt agattatata tcagtgatag agctcattta aatttaaaac atcattcttt
     7081 aatagacatt gcaaaagaaa aactcaaagg caaaaatgcc ataggaacaa caggtaaggg
     7141 tataggacct tcttatgcag ataagattaa tcgtacagga catagagttg gagagctttt
     7201 agaaccacaa agactttgtg aggctttgat gaaagatttt gaagctaata aaactttttt
     7261 tgaaatgctt gaaattgaaa ttccaagtgc tgaagaattg cttgctgatt taaaacgttt
     7321 taatgaaatt ttaactcctt atattacaga tactacaaga atgctttgga aggctttaga
     7381 tgaagataaa agagtacttt tagaaggagc tcagggctct atgcttgata ttgatcatgg
     7441 aacttatcct tatgttacaa gctcaagtac tatttcagca ggtgctttaa caggacttgg
     7501 gttaaatcct aaagaagcgg gaaatattat aggtattgta aaagcttatg caacgcgtgt
     7561 gggaaatgga gcttttccta ctgaggataa gggtgaagat ggagaaaaaa ttgcgcaaat
     7621 tggaaaagaa attggcgtaa gcacgggacg taaaagacgc tgtggatggt ttgatgcagt
     7681 tgctgtaaga tatacagcaa ggcttaatgg tcttgatgct ttatctttga tgaagcttga
     7741 tgttttagat ggttttgaaa agataaaaat ttgtcgtgct tatgaatata agggtatgga
     7801 aatcgactat ataccaagcg atttagaaaa tgttcaacct atttatgaag aaatggatgg
     7861 ttgggataaa gtttttggta taaaagatta tgatttattg ccagaaaatg ctaaaaaata
     7921 tatagcaaga cttgaagagc ttgcaggggt taaggtaaag tatatttcca ctagccctga
     7981 aagagatgat actatcatct tatgaaaagt aaatataatt ctgttgtaaa agtaagaaaa
     8041 caacaacttg ataaagcaga atcaaatctt aatcaagcca aacaaagaca gcttgaatat
     8101 gaaaaagctt atgaactttc acgccaagag tgtgaaaatt taggcgtatt gccaaaatca
     8161 ggatctatag cagagttaag atcgaattta agtatggcgc aagtaggacg cgaggcttta
     8221 gcaagagcta gggagaaagt agaactttct aaaaaagaaa tgaatcatta tcagttttta
     8281 tatcaaaaag cacatttaga ttatgaaaaa atgaaggttt tagaagccga ggaaattaaa
     8341 caaaagcaaa aagaacttgc caaggctgaa gaaaaatttt tagatgaaat tgcaatcagt
     8401 cgttttttca aaggagaaaa agatgattaa aaaatttata ttgttagttt ttatttcaag
     8461 tgtagttttt ggagctgaac aagattgtga gcagtatttt gaagctagaa aagctcaaat
     8521 tgaattgcaa actagagaat ttgatgaagc aagacaatct ttagaagctt ataaagcctc
     8581 ttttgaagct ttgcaaaaag aaaggcttga aaatttagaa aaaaaagagg ctgaggttaa
     8641 tgcaactttg gcaaaaattg aagaattaaa gcttgaaaac gcaaggcttg tagaagaaca
     8701 acaaaagatt ttaaattcaa tcaatgataa aactcaaggt agggttaaag aaatttattc
     8761 ccaaatgaaa gatgcagcca ttgcagatgt tttaagtcaa atggatgcag aggatgcaag
     8821 taaaataatg ctttctttgg aatcgcgtaa aatttcaggt gttttatcta aaatggatcc
     8881 aaaaaaagct agcgagctta ctttactttt gaaaaattta gataataatg ctagtaatta
     8941 ggtgattaaa agaatgaaaa tttttcattt ttaacattct tttaccaaaa ataagctatt
     9001 atttcaaaca ttattaaata aaaggttttc aagatgcgta taaaattacc acatattcct
     9061 tatatcgcaa ataaaatgat gttagatata gctaattctt cttttgtaga aattaaagat
     9121 caattagaaa agcttaaggt atgtataata gaagttttag agaaagatat tctaaatgaa
     9181 agaaaattag atgaaagagt aaaagagctt ttagagcaac aagaagatga aatggagctt
     9241 atgcaagtag atcgtaaaaa tatgttttgg cttgtgaaga aaaagttagc tcctgaattt
     9301 aatgtgattt tagattctga agatagacat aatcatctag cgcatcaaat tttggaagaa
     9361 cttgtagaga atgatt
//
LOCUS       DAEBKH010000060         9348 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.060, whole genome shotgun sequence.
ACCESSION   DAEBKH010000060 DAEBKH010000000
VERSION     DAEBKH010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9348
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.060"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(91..720)
                     /locus_tag="KIL20_000974"
     CDS             complement(91..720)
                     /locus_tag="KIL20_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HBD2721010.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKASVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWEFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMEQFDKINLADQFKE"
     gene            complement(704..2005)
                     /gene="miaB"
                     /locus_tag="KIL20_000975"
     CDS             complement(704..2005)
                     /gene="miaB"
                     /locus_tag="KIL20_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HBD2721011.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            complement(2002..2244)
                     /locus_tag="KIL20_000976"
     CDS             complement(2002..2244)
                     /locus_tag="KIL20_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721012.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            2371..3459
                     /gene="nusA"
                     /locus_tag="KIL20_000977"
     CDS             2371..3459
                     /gene="nusA"
                     /locus_tag="KIL20_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HBD2721013.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVAKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            complement(3475..4662)
                     /locus_tag="KIL20_000978"
     CDS             complement(3475..4662)
                     /locus_tag="KIL20_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD2721014.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLNMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCMLILIGISFLVRLSIPDFHQKTQSRFFIMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INDKNLFYMYLGQGFGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     EYHGRVIAYTDMIYLSFSAIISMLMGFLFEIDLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            4737..5783
                     /locus_tag="KIL20_000979"
     CDS             4737..5783
                     /locus_tag="KIL20_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HBD2721015.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYRRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIDKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLQRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALARLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            5783..7003
                     /locus_tag="KIL20_000980"
     CDS             5783..7003
                     /locus_tag="KIL20_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HBD2721016.1"
                     /translation="MQYLESRGVKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKTLQKLKINALGELASKNSNFDYLAKNLLNAQIFKCKEFQSPNDGDEKSIET
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELSK
                     NIKDEILVRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSIAFNEFYQGLNLGYYKEELKLMEKVKLETINAYIKKHQ
                     ELLNISFASIQNEN"
     gene            6993..8816
                     /gene="recG"
                     /locus_tag="KIL20_000981"
     CDS             6993..8816
                     /gene="recG"
                     /locus_tag="KIL20_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HBD2721017.1"
                     /translation="MKIKESDFEFFKKLKIRSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGVCKVGKELIFNAKLS
                     RFNHTWQFNNPKILTSFEGFSPKYQILGLKDTKIAAFIHKYLNYENLKESGIEDKYIH
                     FLLNLHAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKQTHFKAHQINVFNIANW
                     LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAI
                     LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLIIGTHALIHLE
                     SHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQSELLNFS
                     FIKQMPFKKDITTYCIQNEGFSKLSEKIKEEISKNHQIIIIYPLVSASDNIPYLSLEQ
                     AKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSMIVIVG
                     AERLGLATLHQLRGRVGRVGLKSTCYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNR
                     LSGDLLDGFMQHGNEFKFFDFSKDEEILEKVKKDLAKKLPN"
     gene            complement(8813..9196)
                     /gene="ctb"
                     /locus_tag="KIL20_000982"
     CDS             complement(8813..9196)
                     /gene="ctb"
                     /locus_tag="KIL20_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HBD2721018.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEVWLGLFEESLNMVYNEEM
                     KAVILQRAQMIASHFQNMLYKYGGH"
BASE COUNT         3386 a         1303 c         1490 g         3169 t
ORIGIN      
        1 taaatagaag cttttacaat atttttttta tcttctaaaa taatactaat aaaaagttgt
       61 ggaaatattt ttttaagtaa aaataacatt tcattcctta aattgatcag ctaagttaat
      121 tttatcaaat tgttccatta gaaattcttt agctttttct ttatctaaag ataaaatatc
      181 caaaggttca cttagactat aagtaatctt actaaaaggt tttggcaaga tcatcttatc
      241 ccaactttta aattcccaaa aacgatttgc ttcatagttt aaaattctta tctttagttc
      301 ttttttttga gccaaaatga tagaaccatc tgaaatacta tgataaggcc cacgtggacc
      361 atcaggcgtg ataactatat cgtcattttg ttctaaaact ttaaatgcag ctctaagtgc
      421 actgctagca ccccttgaag tgcttcctct tacagtatca agaccgaaaa gcttgatgat
      481 ttttgcaatt tgttctccat ctttatggtg ggagatcatg acataggctt ttttattttt
      541 ttgtctataa tgtctaaacg caaaaggcat gagtgctaat tttccatgcc aaaaaagtat
      601 cacactagct ttacggtcaa ctttttcacc tttatagtgc tttttacagc ttaaaaaaat
      661 aagccattgc aagatgaaaa ttatatatgt taagcaatgg attttaaacg atttccccat
      721 ataaaaccat acgctttgca ttagtgattt ttacttcttt aaattgccct aaaagttctt
      781 cgctaccttc aacttgaact aaaaaattat tatctgttct tccagcaatg ctattgcctg
      841 ctcttaattc ttcaaataaa actttaaaag ttttattttc ttgttttttt acaatttcat
      901 ctaaaatttc actatgacga ttttgtaagg tgctaagtct tcttgaagct gtttcttcat
      961 cgatttgatt aggcatggtt gcggcttttg ttaaagggcg tttggagtat ttaaaagaaa
     1021 aaatttgttc aaaacgcact ttttccaaaa catccatagt ttcttcaaaa tctttttcac
     1081 tttcccctgg aaaagctaca ataatgtctg tagaaatgct aacatttgga caaagttctc
     1141 taagttttaa agctctattt aaataccatt ctttagtata gccacgtttc atggctttta
     1201 aaatttcact tgaaccgctt tgtaaaggca tatgcatgga tttgcaaact tttggattat
     1261 tggcaaaaac ttctaaaaat ttatcatcca tgtgcaaagg atgtggactt gtaaagcgaa
     1321 tgcgttccaa accttctata gtgctaagtt cttctaaaag atctgaaaag tccatttttt
     1381 tatgttcgtt tctaaatctt ttgccgtagt tattgacatt ttgtcctagc aagaaaatct
     1441 ctttagcgcc tttttcaacg gctttttgag cttctttgta gatgatgtta aaaggtatgg
     1501 aaatttcatc tcctctagta tgtggcacta tacaataagt gcagtgttta tcacaaccta
     1561 tggagatatt aatataggat ttataaatac tatttctaaa atctgcaaaa gcaaattcac
     1621 tttcatcata gtctatgtcc acccccataa attttggagt ttttatagct tgagtgattt
     1681 tggaaatatt tcttgcccct agaacaaaat ccacataagg agcacgtttg aaaatttcat
     1741 ttcccaaatg tgatgcagtg catccacaaa ctcctatttt agcaccttct tttttaactt
     1801 tttcaaagcc acccacttct gagaaaagtt tatgcacagg tttttcacgc actgaacagg
     1861 tattgataag aataagatct gcttctttga tatcttctgt tagtgcgtaa ttttcttttt
     1921 gtgttaattc tgcgatcata tgctcagaat ctctgacatt catcgcacaa cctaaagttt
     1981 ggataaaaag ttttttagca ctcaaagaat atgtacctca tacataaaat cattatcatc
     2041 aagtccgtat tttacggttc tatgataaat gcttactcct tttttttcaa aatgatttac
     2101 aagggcaatg agttgtttgt gtgtattatc tttatcaaaa taaaaaaact tttgtccttc
     2161 tttttctata gcctcttcga ttttttctag gctaatattt ttaggttttt cattaatcaa
     2221 agttcttgcc aattttaatt ccatagctaa atccttaaga attttcattt taatctataa
     2281 ttttagcaaa ttttactttt aattaaactt attaaggata taatttttat ctacattttt
     2341 aaatttccca caaaaaaggt tttataaaat atggaaaaga tagcagatat tatcgaatct
     2401 attgctaatg aaaaaaattt aaacttagag aatgtaagag aaaaggtagc taccgcttta
     2461 atcaatactg caaaaagaat ttatggacaa gaatatgagt tttttgtgga tcctaaaaat
     2521 ttaaatcttt atcaaaaaat taccatagta gcagataatg acgaaagatt gcaaaataaa
     2581 agtgagagtt ttatcgcgtt aagtaaggca aaatcagaag ctccagatgt tgaaatagga
     2641 gatgaattaa cctatgaatg ttctttggaa aatttaggaa gaactgcggt aaataccttg
     2701 cataaagaac ttgaatatca tatacaaaaa ttattagaac aaactatttt tgaaaaatat
     2761 aaaaacaaag tagggcaaat ggtttttggt acagttgtta gagtggataa tgaagaaaat
     2821 acttttattg aaatagatga attaagagct tttttaccga gaaaaaatcg cattaaaggg
     2881 gaaaagttta aaataggtga tgtggcaaaa gctgtgatac gccgtgttta tacagataag
     2941 ggtattaaaa tcgagcttag tcgtacaagt cctaaatttt tagaatgttt acttgaagct
     3001 gaggttccag aaatcaaaga tggttatgtc aatattatag gatgtgctag aattccaggt
     3061 gaaagagcaa aaatcattct tcaggccaat ggagcaaata tcgatcctgt aggtgctaca
     3121 gtaggtgtta aaggtgtaag aattaatgca gtaagcaaag agcttcataa tgaaaatatt
     3181 gattgtatag aatttacaaa tgagagtgaa attttaattt ctcgtgcctt ggctcctgct
     3241 attgtaaatt ctgtaaaaat tgaagataaa aaagctattg taagtttaaa tagcgaacaa
     3301 aaaagcaaag ctataggaaa aaatggtatt aatattcgcc ttgcttctat gttaagtggt
     3361 tatgaaatag agctcaatga attaagctca tcgcagctaa ataatgccat cagtaatgaa
     3421 gaagcaatga aaaatcttca agatttattt aaaatttaaa atatttgtga attttcacaa
     3481 atatttttta taaaaccact tccaataaaa tgccgcaaag ataaaaatca tacccaataa
     3541 gcctgtaatc agttctaaac tcaggtctat ttcaaacaaa aagcccataa gcattgaaat
     3601 aatagcacta aaactaagat aaatcatatc tgtataagcg atcaccctac catgatattc
     3661 tttgtcggca tttttttgta tcatagtgta ggtataagcc caaagcgctg aggtaaaaaa
     3721 acctgcacca attaatccta aaaaagaaat ataaaaatta aattgagtta aagcccaaag
     3781 tataatacca aaaccttgac caagatacat gtaaaataaa tttttatcat tgataaattt
     3841 gcttaaaacc ataggtccta tagccaaaga acaagcacgt accgcattta aaaaccctat
     3901 tactaaagca gcagataaaa cttctttata ttgatgttgc gctaaaagcg taactaaggt
     3961 ttcataagca gttaaaccta taaaagcgtg aagcaagata agatgaaaaa ttattttatt
     4021 atttaaaaca tagaaaaatc cttcttttat catgataaaa aagcgacttt gtgttttttg
     4081 atgaaaatca ggaatgctta atcttactaa aaaagaaatg cctatgagta taagcatgca
     4141 gtcaaataaa aaagcggttt taactcctag aaaataaata aaaattcccg cacttgccat
     4201 acctgctgta taagaaatcg cccaaatgac actgtgcatt tcattagcga gtttaagttc
     4261 ttgaggggtt aaaattttcg ccaataaact catttcagct tgaaaataaa tcgaagcaac
     4321 acaaagtctt atgaaaatta aaataaataa aagccaaagc atactaagac ttgtgacaaa
     4381 aataagacaa aaaatagaaa ttaattctat actaatcata ttgagtaaaa gttttttagg
     4441 tttatttttc tctactatga cgccattaat aggagcaagc aaaactccag gtaaaaaagc
     4501 aagcatagca cttgtagctg ttgcccaagt aggagcatta agctcaacca aaagggtaaa
     4561 aactcctgtt tgagaaaacc atgctccaaa atatactata aactgaaccg aagctaatat
     4621 tctgatattt ttattatttt ttaatagttc aatgtaattc ataagcgaaa ctatagcata
     4681 atttatattt taaatgctat aattatttta atttatgcaa aaaacaagga aaaattttga
     4741 aaagactgga taaaaaagaa gctttagatt tattacatca tgcaagttta acagagcttg
     4801 gagaaatggc ttatagaaga aaattagaac ttcatcctga aaaaatcact acttttgttg
     4861 tagatagaaa tattaactat actaatgttt gttgtattga ttgttctttt tgtgcttttt
     4921 atcgtcatca taaagaagat gatgcttata ttttaagttt tgaagaaata gataaaaaga
     4981 tagaggagct tgaagctatt gggggtacac aaattctttt tcaaggcggg gtgcatccaa
     5041 aattaaaaat agaatggtat gaagaattag tttcttggat aaaagaacat tatccaaata
     5101 tcactgtaca tggtttttca gcggttgaaa tcgcttatat tgcaaaagca tctaaaattt
     5161 caattactga agtgcttcaa agattacaag ctaagggttt attttctata ccaggagcag
     5221 gtgctgaggt gctaagcgat agggtgcgtg atatcattgc acccaataaa tgtgatacag
     5281 ctacttggtt agaagtacat cgccaagctc ataaaatcgg tatgaaaagt acagctacta
     5341 tgatgtttgg aacggttgaa aatgatgaag aaatcatcga tcattttgaa catttaagaa
     5401 aattacaaga tgaaacaggt ggttttagag cttttatttt atggagtttt caaagtgata
     5461 atactgcttt aatccaaaaa catccagaga ttatgaaaca aagttctaac aagtatttaa
     5521 gacttttagc tttagcaaga ctttatttag ataattttaa aaatttacaa agttcttggg
     5581 taactcaagg ctcgcttata ggtcaacttg ctttaaaatt tggggctaat gatttaggct
     5641 caaccatgat ggaagaaaat gtagtaagtg ctgcaggagc aagttataga atgaatcaag
     5701 atgagatgat aaggctgatt agaagtttag gcgaaaatcc agctaaacgc aataccgctt
     5761 atgaaatttt agaaaggttt taatgcagta tttagagagt aggggtgtta aaatcccttt
     5821 tatttttgaa aaaaattctg attttcctat tgttgtttta aagcttgttt ttagaaattg
     5881 cgctagaagt tatgatgaaa tagcaggttt ggctaaaatg ttttcacgca ttttaaatga
     5941 aggcgtggat gataaatttt ttaaggattt agaatttaga gcgataaatt tagaggcaag
     6001 tagtggtttt gaaagtttgg aaatcaatct ttcttgcttg aaagaaaatt ttgattttgc
     6061 tttaaagagt ttagaaaaat tgcttttaaa accaagaata gaagaaaaaa ctttgcaaaa
     6121 attaaaaatc aatgccttag gtgagctcgc gagtaaaaat agtaattttg attatttagc
     6181 aaaaaattta ctcaatgctc aaatttttaa atgtaaagaa tttcaaagtc caaatgatgg
     6241 agatgaaaaa agtatagaaa ctttgtcttt aaaagatttg caaaattttt ataaaaattt
     6301 tatccatctt agtgatttgg ttgtgatttt aggaggagat ttagaagaaa aacaagccaa
     6361 ggaagatctt ttaaaactct tatcaaaact tcaaataggt aaaaaaaata ctccaaaaaa
     6421 atatgagtta agcaaaaaca tcaaagatga aattttggta cgcccagaaa gtgaacaagc
     6481 ttatatttat tttgctacgc ctttttttgc tgattttaaa gataaggatt tatatcttgc
     6541 aaaaattgct ttatttgttc tagggcaagg aggatttggt tcaaggatta tggaagaaat
     6601 tcgcgttaaa agaggtcttg catactcagc ttatgctatg cttgatatga atatgtcttt
     6661 ttctagagtt tttggatatt tacaaactaa aaatgaaagc gctaaagaag ctaagaaaat
     6721 cgtaaaagag ctctttgaag attttataaa aaatggcatg actcaaaacg aacttgatca
     6781 agctaaaaat tttctcatag gatcaactcc tttgcgttat gaaagcttaa gtaagcgttt
     6841 atctatagcc tttaatgaat tttatcaagg tttaaatttg ggatactata aagaagaatt
     6901 aaaacttatg gaaaaggtta agcttgaaac cataaatgct tatattaaaa aacatcaaga
     6961 acttttaaat ataagttttg caagcataca aaatgaaaat taaagaaagt gattttgaat
     7021 tttttaaaaa attaaaaatt agaagtgcta ttgatttagc gcttctttta cctaaaaaaa
     7081 ttgaaaattt aaatccaagt aaaaatccca aagaaaatga aatttgcacc caaaaaatca
     7141 ctataaaaag cgttagttca agaaaaaatc aactttttgg tttaggtttt tgtgaagaat
     7201 ggcaagaaaa tatttctttt gtattttttc atcctagagc ttggcatttt ggggtttgca
     7261 aggtaggaaa agagcttatt tttaatgcta aactctcgcg ttttaatcac acttggcaat
     7321 ttaacaatcc taaaatttta acttcttttg agggttttag tccaaagtat caaattttag
     7381 gtttaaaaga tacaaaaatt gccgctttta tacataaata tcttaattat gaaaatttaa
     7441 aagaaagtgg catagaggat aaatatatac attttctttt aaatttacat gcttatgatg
     7501 aaaaaagttt ttttatgttt gaaaatttgc aaaattttag caaagattta aaatatatag
     7561 aaatatataa ttttttaaag cgtttaaaag ctaaacaaac gcattttaaa gctcatcaaa
     7621 tcaatgtttt taatatagct aattggctta aagatttgcc tttttctctt actaaagatc
     7681 agcttaacgc cttaaaagac atagaaaaag atttacactc aaaagaagcc aaaaggcgtg
     7741 tgattatggg tgatgtgggg tgtggtaaaa ccttggtttt actcggtgcg gctttgatgg
     7801 tttatcctaa gcaagctatt ttaatggcac ctactagtat tttagcgtat cagctttatg
     7861 aagaggctaa gaaattttta cctgatttta tgaatatttt gtttattaaa gggggtaaaa
     7921 aagaaaaaga tttagaacaa aatatccaaa aagcaaatct tatcataggc actcatgctt
     7981 taattcattt agaaagtcat aatgccgtgc ttgtaatgat agatgaacaa catcgttttg
     8041 gatcagctca gcgtgaaaaa attcattctt taaataagca agaatttgcc cctcatttta
     8101 tacagttttc agctacgcct attccaagaa ctttaagcat gatacaatct gaacttttaa
     8161 attttagctt tattaaacaa atgcctttta aaaaagatat tacaacttat tgcatacaaa
     8221 atgaaggttt ttctaagctt agcgagaaga tcaaggaaga aatttctaaa aatcatcaaa
     8281 ttatcattat ttatccctta gtgagtgcta gtgataatat tccttatctt tctttagagc
     8341 aggccaaaga atattggcag agtcattatg aaaaagtttt tgtaactcat ggaaaagata
     8401 aacaaaaaga tgaaatttta gagcgtttta gagatgaggg aaatatttta ctaagcacta
     8461 cagtggtgga agtaggtatt tctttgccaa gattgagtat gatagtgatt gtgggggcgg
     8521 aacgtttagg acttgctacc ttacatcaac ttcgtggccg tgtaggtcgt gtagggctta
     8581 aaagtacttg ctatctttat actaaactta aagaaattcc gagtcgttta aaagaatttg
     8641 ctagcacttt agatgggttt aaaatagcag agcttgatct taaaaatcgt ttgagtggag
     8701 atttgctcga tggttttatg caacatggaa atgagtttaa attttttgat ttttccaagg
     8761 atgaggagat tttagaaaag gtgaaaaaag atttggcaaa aaaattgcca aattaatgtc
     8821 caccatattt ataaagcata ttttgaaaat gtgaagctat catttgtgca cgctgtaaaa
     8881 taactgcttt catttcttca ttataaacca tatttaaact ttcttcaaaa agtcctagcc
     8941 aaacttcaaa aaattcttga ggaaaaggag gtaaatctag atgctttttt aagggttgcc
     9001 cattataatc accttctcct aaaagcatgc ctgcccaaaa atttcctatt tttgctttat
     9061 gttctttcca ttcttcatca cttgttccaa tagcattgtt aaaaataggg cccaaatcct
     9121 tatcttttct aactttttca taaaatattt ccatgagttt tgctatgctt tcttgattaa
     9181 ttgtttcaaa tttcatataa gcctttctta aatgttaatt ttatggcgtt aatatagcaa
     9241 aaataagata aattaaattt aacataagtt aagaatggaa aatgtatata atgaaagatt
     9301 atttagaact tttatctagt gtaggaaaat taaaaaaaat tcaaaaaa
//
LOCUS       DAEBKH010000061         9317 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.061, whole genome shotgun sequence.
ACCESSION   DAEBKH010000061 DAEBKH010000000
VERSION     DAEBKH010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9317
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.061"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..132)
                     /locus_tag="KIL20_000983"
     CDS             complement(<1..132)
                     /locus_tag="KIL20_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HBD2721019.1"
                     /translation="MDFFDEMFNKTPKEKFIEIIQNGNLGALEKVFEEFFADHIAMVE
                     "
     gene            complement(271..828)
                     /locus_tag="KIL20_000984"
     CDS             complement(271..828)
                     /locus_tag="KIL20_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HBD2721020.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPYS"
     gene            complement(825..1670)
                     /locus_tag="KIL20_000985"
     CDS             complement(825..1670)
                     /locus_tag="KIL20_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HBD2721021.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(1671..2795)
                     /locus_tag="KIL20_000986"
     CDS             complement(1671..2795)
                     /locus_tag="KIL20_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HBD2721022.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(2804..3115)
                     /locus_tag="KIL20_000987"
     CDS             complement(2804..3115)
                     /locus_tag="KIL20_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HBD2721023.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECEIHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(3130..3999)
                     /gene="sucD"
                     /locus_tag="KIL20_000988"
     CDS             complement(3130..3999)
                     /gene="sucD"
                     /locus_tag="KIL20_000988"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HBD2721024.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGITPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(4009..5172)
                     /gene="sucC"
                     /locus_tag="KIL20_000989"
     CDS             complement(4009..5172)
                     /gene="sucC"
                     /locus_tag="KIL20_000989"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HBD2721025.1"
                     /translation="MNIHEYQAKAIFADNGILTLKGKVAFSVDEAVSNAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITLIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDITEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKAILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(5173..6075)
                     /locus_tag="KIL20_000990"
     CDS             complement(5173..6075)
                     /locus_tag="KIL20_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HBD2721026.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSSVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFDDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMIESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSSQEKDKLEKSLIKYQYKGE"
     gene            complement(6072..8276)
                     /locus_tag="KIL20_000991"
     CDS             complement(6072..8276)
                     /locus_tag="KIL20_000991"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HBD2721027.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILATFSECLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYSEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNVA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLNGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCGNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(8393..>9317)
                     /locus_tag="KIL20_000992"
     CDS             complement(8393..>9317)
                     /locus_tag="KIL20_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HBD2721028.1"
                     /translation="KNKGIMEIHTQSDTASAKISSDNKEIHLKNLSYIYRKHSNSSNS
                     TFDIATNTQNISFGGANVALILADSNKTLAFDRVEADLKGNALDLKGSRGNAKFDLYY
                     SSNDLNLNVSNIDDNYLNEFLQKQAVQDGVFNLSIKGSGLEYFDGQIDFKNTYVKDLK
                     GINQLISFIDTVPSLLMFKSPTFNQKGLSLHDGKIIFNRKKDLLSVSAINLNGDSVDI
                     YGLGSANLRLNTVDFSLELKTLKSASEAISKVPILNYVILGKNQEISTNLKIDGSIDD
                     PKFHTEILTDTLKTPFNLIKNIIQLPANLLN"
BASE COUNT         2890 a         1914 c         1185 g         3328 t
ORIGIN      
        1 ttccaccatg gcaatatgat cagcaaaaaa ttcctcaaaa actttttcta aggctcctaa
       61 atttccattt tgtataattt ctataaattt ttcttttgga gttttattaa acatttcatc
      121 aaaaaaatcc attaattttc cttgaaaata taagtttttg attataaaat tttaatcgtt
      181 aaaagtagct aaattaaaat aattaaaatt taaattttat ttgcaatgtg taaaatttta
      241 gaagttaaat tccgcatgat gcggaattta ttatgaatat ggttttgctt gagtggcgta
      301 ttttacaccc agatcaaaag ctttagcatt tgcatcacga gtttttgcag gaaccatatg
      361 aagcatagtt tcttttaaaa catctaaatc tatacatttg ctcatataag cagcaattgc
      421 aagtgcaaca actgattgag tagctacatt tcctacctca tctttagcta tggtgataat
      481 agggatttca aaaatttgcc attttttata atcttcactt tcaggatgta ctaaatttgg
      541 ctctacaact ataatacctc cttcttttac acccccacga aaacctttat aacccttatc
      601 tgcagtcgaa agcataaaat ctacttcccc ttctacagca taaggaaata aaatttcttt
      661 atcatcaatg ataatatcca ccttagtagg gccaccacgc acttgtgaag tgtaagtaga
      721 agccttaaaa gcttgacgac cttctttaat ggctgcttct gctaaaattt ctcctgcggt
      781 gataacacct tgtccgcctt caccgccaaa tcttaattga tatttcattt taaagctcct
      841 aaatccacca ttcttttttc tttggctgca cgacgtactt cttcataagc gtggcagtat
      901 tctggctgag aattatcttc atgtaaaatt cctgttggaa atttatcttt tctttcttca
      961 aaatccatgc tttcaaattt agctttatcc acaacgcgat ttttaatcca atcaagcata
     1021 gctacagctt cgcccatttt gttttttctg cctagattga tatgacaatt tgaaaaaaca
     1081 tctacaaaac tataaccctt atgcgctaaa gccttataaa ttaaattttc aagcttatta
     1141 gcttcgatca cattacccct tgccacaaaa gaagctcctg cagctttagt taattcacac
     1201 gcatcaaaat tagggtcaat atttccaaat tgagctgtta ctgtataaaa accttttgga
     1261 gtggttgggc ttgtttggga attcgtaagt ccatagatga aattattgat tacaatatgt
     1321 gttaaatcaa tatttctgcg acaaccatgt atagtatgat ttccaccaat tgccaaagta
     1381 tccccatctc cacttactac aataacatgt ttactaggat tggctagttt aatgcctgtt
     1441 gcataagcta ttgctctacc atgagtagta tgaactgtat tacaatttac ataagaactc
     1501 attctgccac tacaacctat acccgaaaca agacaaacat catccatatt ccaaccaagt
     1561 ttttctatcg cgcggataat acattttaaa acaacaccat cgccacatcc ccaacaccat
     1621 tgagtaggca ttttatctac tcttagatat tcatcataat taaaagccat ttatatattc
     1681 tcctttacct tagcaataat ttcacttgga gtgataggac gaccatttgc acggtgcaaa
     1741 ctaataaaat cgcgacgcga agttactctt tcaatctctt caagatattg tcccatatta
     1801 agctcgctta ccatgacttt tttaaatttg cttacaacct cagcaatttt tttctcagcc
     1861 actggataaa gagtaattgg acggaaaagt cccactttaa tcccttgctc tcttaatctt
     1921 tgtatagctt cttttgctga acgactcacg cttccataag caatgattaa aaattcagca
     1981 tcatcaagca tatactcttc ataagtacaa atatcttctt gattgttttt tattttacct
     2041 atgagtcttt ccatattttt tttcactata actccatctt cagttggaaa acctatatct
     2101 ccatgatgaa gtcctgtaac atgataacga taacctgtaa agaaaggatt taaagttgca
     2161 ggctcatttt ctcctgctgc ataaggttta taatcctttt tatcgccttc aaatttttta
     2221 cggttatata ctttaatatc ttttaaatca ggtaaaaccg ctttaccatt catgtgccct
     2281 acagtttcat ccataagtaa aaatactgga gtcatatatt tttcagctaa attaaacgct
     2341 ctaatggttt ctgtataagc ttcttcaaga cttgcaggag caatagcaat acttgcaaaa
     2401 tccccatgag ttggtgcttt agcttgaaac aaatctcctt gtgctacacg agttggaaga
     2461 cctgttgaag gaccacctct cataacattt acaatcacaa gtggaatttc agcaataaat
     2521 gcaagtccta tttgctctgc ttttaaagaa attccaggac cgctacttgc agtcatggat
     2581 tttaccccac tcattgccgc accaatagcc acgctaatac ctgaaatttc atcttccatt
     2641 tgtataaaag ttccatcatt tgcaggaagc atatggctta attcatgagc tatctcacta
     2701 ctaggagtaa taggataacc tccaaaaaat ttacatccac aatcaatcgc agctttggcg
     2761 attaaaacat tacctgttgc tataacttct ctcattattt ttcctatgct aattttttgt
     2821 atttgttatt ttttacggct acagctctat ctttagcctc agcagtaagt ttggcaaatt
     2881 taaattcatc tctttttgcc accataatag caaaatcagg gcaatgtatc tcacactcgg
     2941 tacagcctat acaggattca gggtgtacca cctctatcat ttgtcctaaa accgcatgca
     3001 catcatcgcg catagctaaa accccagcgg ggcaatagct aacacaaata ttacatgctt
     3061 tacatctatg ctcatctacc caaacagggg tatcttttgg agctgtcata ctcatgtttt
     3121 tttcctttat taacctaata ttttttgaat ttcttcacca attaaagccg gagaatccac
     3181 cacatgaatt ccatagcttt ttaaagcttc ttttttagct gcagcacttt catcagcact
     3241 tcctactatg gcacctgcat gccccattct tttgccttta ggagcagttg cacctgcaat
     3301 gaatgctacc acaggtttgc taatattttc tttaataaat ttagccgctt ccacttccaa
     3361 actaccacca atttcaccta tcattacaat agctttagtt tcatcatctt tttggaattc
     3421 acttaaaagt tctttataag caagacctat gataggatca ccaccaattc ctactgcagt
     3481 agaaattcca taaccacctt gaactacctg attagcagct tcataagtta aagttccact
     3541 ttttgaaata agccccacgc aacctttttt aaaaataaaa cctggcataa tacctaactt
     3601 acattcttca gaagtgataa tacctggaca atttggtcca atgattttca tacccttttt
     3661 attagcatat tgcttagcaa acatcatatc ctttacaggc gtatgctcgg tgattacaac
     3721 tgcaagctta atacccgcat cagctgcttc aatcacgcta tcacctacag caaaagcagg
     3781 tacaaagatc aagctcacgt cagcctttgt tgctttaacc gcatctgcaa cggtatcaaa
     3841 aactggttta cctaaatgag tttgtccacc tttatgagga gtgatgcctc cgactatatt
     3901 tgtaccataa gccatgcatt gctcggcatg aaaagttgct tctttgcctg taaaaccttg
     3961 aactattact tttgtatttt tattaaccaa tatactcatt ttctatcctt atcctactaa
     4021 actttttaca agctctgcac cgtttttaag attggttgct gctttgatat ttttaagatt
     4081 tgaattatcc aaaattgcct ttgcttccgc tgcgttagtg ccatctagac gcactacaat
     4141 tggaatattt acctcaacat tcttagtagc ttctaaaatt ccgtttgcta tcctatcaca
     4201 acgaacaata ccaccaaaga tattgataaa tataactttt acatttttat ctcttaaaat
     4261 gatttcaaaa gcctttgcaa cagtttcagg tgaagctcct ccacctacat ctaagaagtt
     4321 tgcaggtttt gcaccgctat aattaataat atccatagtt gccattgcta gacccgcgcc
     4381 atttaccata caagctacat ctccatctaa tttcacatag cttaagccaa attcagccgc
     4441 ttctctttca gcaggatttt cttcggtaat atctctaagt tcagcaattt caggatgacg
     4501 ataaagcgca ctatcatcaa aactgcattt tgcatcaagg gcataaaaat ccccttctgc
     4561 agttttaatc aaaggattga tttcaagcat attcatatct ttatccatat aaagcttata
     4621 aagtttagct atcatggaaa tgagtttttt accttcatct ttatcaagtc ctaaaactct
     4681 cgctacttca agtccatgaa acattttaaa accgatttgt ggatcaatgc ctacttttgc
     4741 aattttctca ggactttctt tggctacttt ttctatatcc atccctcctt cacttgaagc
     4801 gataagggta atttgctctg ccattctatt aaataaaata gccaaataat actcttttac
     4861 tatattagca ccactttcta tataaagttt ttgcacgagc ttgccttcag gtcctgtttg
     4921 atgagttact aaattcattc ctaaaatttt actcgcgtaa tcttttacct catctaaatt
     4981 cttagcgatt ttaacaccac caccaagacc acgacctcct gcgtgaattt gagctttaac
     5041 cgcccaaaca ctaccaccta attctttagc attagacaca gcttcatcta cgctaaatgc
     5101 gacttttccc tttaaagtaa ggatgccatt gtccgcaaaa attgcttttg cttgatactc
     5161 atgtatgttc atttattctc ctttatattg atacttgatt aaagattttt ccaatttgtc
     5221 tttttcttgt gaactaagat ccattttcat gatttcaatc acaccttcaa gtcctaatct
     5281 tgccatcact cctaaggctt tgttttgcac cccaaattct ccatgtaaaa tcacactcat
     5341 aggtaaaaac tcgccacttc ttatagactc aatcattctt atgcaagcac tagcaggagc
     5401 taaataagct gaagttttaa gatgtttgat tactttagct ccacctgttt taacttcatt
     5461 ttccaaatca tcaaattctt cttcatttaa aaattcgctt atatttttat ttttaacact
     5521 cgcataagat tttaccaaaa ccatatcatc attatgaaaa ccaataagtc ttgtatctac
     5581 acttgacatt ttgacattaa gttttttggc aagctcgtat ttaaatcttg cattatctaa
     5641 aactcctgcc atggctataa ttttctttga tgaaaaaatc ccgctttcat aaagagtatt
     5701 aagtagaaaa tccacaggat tagttaaaat aataaaaagc ggatcttctg taaaatcttt
     5761 gattttctta gcacaatcaa gcataatgct tgtatttaac tgaagcaatt cttctctact
     5821 ttgcccatct tttctagcaa aacctgcact aaaaagcact atatctgaat ttttggtatg
     5881 agtataatct ttagtgcaaa gtaaatctat atttaaattt aaagcagcta tgctttgagt
     5941 aagctctagt tcttttgcgt aaagcaaatc ctcgttaata tctactaaaa caatttcatt
     6001 tgctatttct cttaaaatca aagcataagc tacgcttgaa cctacattgc cagcccctat
     6061 aacagtgatt ttcatctttg tcctattttt tctaaaatag cgttaaaagt tgcacttgga
     6121 cgcatgattt tatttgcttt ttcatcatca aatttataat acccacccaa atccactttc
     6181 acaccttgtg catcgttaaa ttcggctctg attttttctt cattagaaga aagctctagg
     6241 gcaatatctt taaaaaagct ttgaagctcc atatcacttg cctgtcttgc taaatgattt
     6301 gcaaaataca ttgctaaata aaaatgactt gttctattat catcttcttt gacttttctt
     6361 gatggagctt tattattttc aagccattcg cctatagcct catcaagaca ttctgctaaa
     6421 accttagctt tatgattgcc acacttattt gcataaaatt ccaaacttgc ttgcaaagcc
     6481 aaaaattcac ccaaactatc ccaacgcaga tgattttctt cgactaattg ttctacttgt
     6541 ttaggtgctg aaccccctgc tcctgtttca aacatagctc caccatttaa cataggcaca
     6601 acagaaagca tttttgcact tgttccaagc tctaaaatag gaaaaagatc ggttaaataa
     6661 tcccttaaaa cattacccgt gatagaaata acatctttac cttctcggat taactctaaa
     6721 cttcttaaac aagcttcttt tggagttaaa atggctacat ttttaccctt ttcttttaaa
     6781 cgattttgta ccaaagttat catgatttta ttactagctc ttttgctatc taaccaaaaa
     6841 atagcttcgg ctccactaag ttctgatctt tctataccta aatcaatcca atttaacact
     6901 gcatcaaatt tagcctgatt agctctataa atatcacctt ttctaacctt atgttctaat
     6961 aaaactttac cgttagaaac tattttaaaa gttccttctt ctttagccac aaaggtttta
     7021 tcgtgcgatc catattcttg agctttttta gccattaaac ctacattaga tacactgcca
     7081 agttttgaag gatttaaagt accattttta tgcaaatctt caataaccgc ctcataaata
     7141 gttgcgtaag tttgatcagg aattacggca tttgtgtcct tttccttacc ttccttatcc
     7201 cacaatcttg cgccattttt aagcattgca ggcatagaag catcaacgat aacatcgctt
     7261 ggaacatgaa gatttgtaat gcctttatct gaatttacca tagaaatatc tgcagattta
     7321 gctaaaattt cactgtattt ttttaaaatt tcatcttttt tgcttgaatt ttcgatctta
     7381 cttaaaagct cacttaaacc attatttgga ttaatgccta atttttcaaa ttcatcttga
     7441 aattcgataa ataattcttt aaaaaatact tttaccgcat aaccaaaaag tataggatca
     7501 cttactttca tcattgtagc ttttaaatgc aaagaaaaaa gcacatcatc atctttgctt
     7561 gctttaattt cttttgcata aaattcctga agtttttgca catccataaa agtagcgtct
     7621 aaaatttcat ttttttcaag ttttaagccc tcttttaaaa tttctttttt accatcaacg
     7681 cttgtaaatt ctatattagc cacacaatct tgatcgatta aaaccgcttt ttcattagag
     7741 aaaaaatccc cttctttcat gtaagaaaca cgagtttttg agtttggatt aaactcaacc
     7801 acacgataag gattgttttt tgcatagtct tttaccgctt ttgttgaacg acgatctgaa
     7861 tttccttgtc ttaatacagg attaaccgct gaacctaaaa ctttttgata ttttgtttta
     7921 atttgcaatt cttcatcatt ttttggctca tctgggtaat ttggtaacat ataaccctta
     7981 tcttgcaatt ctttaatcgc cgccttaagc tgaggaatag aagctgaaat atttggggtt
     8041 ttaataagat ttgcatccga tcttttgaca agctcgccta aaagctctaa agcatcttca
     8101 catctttgtt cctcttttaa acactcacta aaagtagcta aaatccttcc agacaaagaa
     8161 atatccgagg tttttactcc tatatgtgcc ctacttaaaa aagctttcac tataggcaaa
     8221 aacgaataag tcgcaagagc tggcgactca tctgttaagg tataagtaat ttgcattttt
     8281 agtcctttaa aatacttatt tttattttca tttttaagta tattacaaat aaaaaaaaat
     8341 gcaagagtaa gtttaaagtt tgttttagtt ttcaaacaaa ctttaaatat ttttaattaa
     8401 gtaaattagc aggaagttgt atgatatttt taataagatt aaaaggggtt tttagggtat
     8461 ctgttaaaat ttcggtatga aatttagggt catctatgct tccatctatt tttaagtttg
     8521 tgctaatttc ttgattttta cctaaaatta cataatttaa aattggaacc ttggatatag
     8581 cttctgaagc tgattttaaa gttttaagct ctaaactaaa atccactgta tttaatctta
     8641 aatttgctga tcctaaacca tatatatcta cactatcacc atttaaatta atagccgaaa
     8701 cacttaaaag atcttttttt ctattaaaaa taatctttcc atcatgtaag cttaaacctt
     8761 tttgattaaa agttggagat ttaaacatca ataaacttgg tacagtatcg ataaaggaaa
     8821 taagctgatt tatacctttt aaatccttca cataagtatt tttaaaatcg atctgtccat
     8881 caaaatactc caatccactt ccttttatac ttaagttaaa cactccatct tgaacagctt
     8941 gtttttgtaa aaactcattt aaataattat catcaatatt gctaacgttt aaatttaaat
     9001 cattagaaga ataataaaga tcaaattttg catttcctct agaaccttta agatctaaag
     9061 cattgccttt taaatcagct tctactctat caaaagccaa agttttatta gaatctgcca
     9121 aaattaaagc tacatttgct ccaccaaaac taatattttg ggtattagta gcaatatcaa
     9181 atgttgaatt tgaagagttg gaatgttttc tataaatata acttaaattt tttaaatgaa
     9241 tttctttatt atcagaactt attttagcac ttgctgtatc actttgagta tgaatttcca
     9301 taatgccctt atttttt
//
LOCUS       DAEBKH010000062         8876 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.062, whole genome shotgun sequence.
ACCESSION   DAEBKH010000062 DAEBKH010000000
VERSION     DAEBKH010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8876
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.062"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            34..705
                     /gene="hsrA"
                     /locus_tag="KIL20_000993"
     CDS             34..705
                     /gene="hsrA"
                     /locus_tag="KIL20_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HBD2721029.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            818..1063
                     /locus_tag="KIL20_000994"
     CDS             818..1063
                     /locus_tag="KIL20_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HBD2721030.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            1063..2523
                     /locus_tag="KIL20_000995"
     CDS             1063..2523
                     /locus_tag="KIL20_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HBD2721031.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTCEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDNYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(2520..3317)
                     /locus_tag="KIL20_000996"
     CDS             complement(2520..3317)
                     /locus_tag="KIL20_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721032.1"
                     /translation="MRLLVLFFLILPLYSVELISFNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESVPTTTANNSQELMPKPKSTSLEGYDYTNYILVMLIL
                     VILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVVFDHANKRYTMIIGNSNV
                     LLESVEIPEEQIIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
     gene            complement(3318..3626)
                     /gene="fliN"
                     /locus_tag="KIL20_000997"
     CDS             complement(3318..3626)
                     /gene="fliN"
                     /locus_tag="KIL20_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HBD2721033.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(3626..4048)
                     /locus_tag="KIL20_000998"
     CDS             complement(3626..4048)
                     /locus_tag="KIL20_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HBD2721034.1"
                     /translation="MLKILEYSITHFCEHILRLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
     gene            complement(4119..4868)
                     /locus_tag="KIL20_000999"
     CDS             complement(4119..4868)
                     /locus_tag="KIL20_000999"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HBD2721035.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIEEIFKK"
     gene            complement(4861..6039)
                     /gene="trpB"
                     /locus_tag="KIL20_001000"
     CDS             complement(4861..6039)
                     /gene="trpB"
                     /locus_tag="KIL20_001000"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HBD2721036.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            complement(6036..6635)
                     /locus_tag="KIL20_001001"
     CDS             complement(6036..6635)
                     /locus_tag="KIL20_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HBD2721037.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGFIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFILAGGIGLDN
                     VHKAVQTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            complement(6622..8223)
                     /gene="trpD"
                     /locus_tag="KIL20_001002"
     CDS             complement(6622..8223)
                     /gene="trpD"
                     /locus_tag="KIL20_001002"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HBD2721038.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDEISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPLNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKSQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQVAALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALSITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEIRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            complement(8220..>8876)
                     /locus_tag="KIL20_001003"
     CDS             complement(8220..>8876)
                     /locus_tag="KIL20_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HBD2721039.1"
                     /translation="SAYMFYFPSKYGVVLGSSPEFLLKIKKREIYLAPIAGTRNLENN
                     CDLLALEKDLLSDEKELSEHKMLVDLARNDASKFGTQTRVENLFSIIKNKFVMHIVSE
                     VYANMKEDASIFDVIEAVFPAGTLSGAPKIRALEIISELEDCDRGVYGGAVGFLNFNE
                     DITLAILIRCAFFTQDKAYLASGAGIVLQSESQKEYAEICAKRRALLVAFENLKKENQ
                     "
BASE COUNT         3095 a         1594 c         1084 g         3103 t
ORIGIN      
        1 ttctttaaat ttttcttaat aaggatagaa caaatgagaa ttttagttat agaagatgag
       61 attagcctaa ataaaacaat tatagacaat cttaatgaat ttggttatca aactgattct
      121 tctgaaaatt ttaaagatgg agaatacttt atcggcatta gacattatga tttagtttta
      181 gcaaactgga ctttacctga tggagatgga gcggaacttg ttaacactat taagcataaa
      241 tctccaagaa cttcggttat gattatgtct tcaaaaacag acaaagaaac agaaatcaaa
      301 gctttgaaag ctggagctga tgattttgtt aaaaaacctt tagattttga tattctactc
      361 gcaagaattg aagcaagact aagacttggc ggaaccaatg ttattaaaat tgaagactta
      421 gttattgatc cagatgagga aaaaattact tataaaggtc aagatataga acttaaagga
      481 aaaccttttg aagttttaac gcacttagca agacattcgg atcaaattgt atccaaagaa
      541 caacttttag atgccatctg ggaagaacct gagctagtaa ctccaaatgt tatcgaagta
      601 gctatcaatc aaattcgtca aaaaatggat aaaccattaa atatatctac catagaaaca
      661 gttcgtcgta gaggataccg tttctgcttc cctaaaaaat cttaacaatt ttgcaccttc
      721 ggtgcaaaaa atttatcttt atttctattt ttatatttta tttaagtttt gttattgtat
      781 aaactaaaat tattttttaa atttttgaaa ggttatgatg tctcttttaa ttacaaaaga
      841 ctgcgtatgt tgtgatgctt gcagagaaga atgtcctgat gaagctattt atgaaaatag
      901 tccaatttat gtaatagacc ctgatctttg ttcagagtgc gttaatgatt tttcagagcc
      961 tgcctgtatt gttgcttgcc catatgaatg tatcattcct gatcctgata atgtagaaac
     1021 tatagaagaa ttaaaactca aacatagaga tagagaattt taatggcaaa aaaaacagcc
     1081 gttgttgatc ttggctcaaa ctccattaga atggtgattt ttgaaaaaac ttctagatat
     1141 ggtttttata caacttgcga atacaaacgc aaagtaagac ttggagaaaa tgcttataat
     1201 aatggcaaaa ttctccaaga agaagccatg caaagagccg aagatgcctt agcttttttc
     1261 aaacaatgcg ctttaaagca taagtgcaaa aaaatattta tagtaggcac atcagcctta
     1321 agagatgccc caaattcaaa aaatttcatt aaaagaatca aagataatct gtctttaaat
     1381 atacgctgta tagatggaaa aagcgaaagt tacttaggtg gtcttgcagc tctaaattta
     1441 ttaagtcctt ttaaagatgg aaccacttta gacataggtg gtggttctag tgaattgtgt
     1501 ttaataaaaa ataatagaat tatttcttgc atatctcttg atattggcac tgttaggcta
     1561 aaagaattgt tctatgatac tggaaaaatg gattctttag aagaatttat aaaaccaatt
     1621 ttagaacaaa ttcctaaaga attttgcaat caaaacctta ttgcaatagg tggaagctta
     1681 agagcaatat ctaattccat catgcaaaaa aattcctatc cactgaaaaa tttacatgat
     1741 tttcgctata tgctagatga agaaaaaggg catattttaa aaatttttaa ttcaaactta
     1801 gactctttaa tcaattttgg cataaaaaag gatcgttttg ataccattaa agagggtata
     1861 tttatttttt taaagattgc ggaaaaaata aaagccaaac aagttatcac gagtggggtt
     1921 ggaatcagag aaggagttta tttgcaagat ttacttcgtc ctaaaatcac ttttccacca
     1981 aattttaatc ctagtttaaa atgtttacaa gataaatttt tacaatcaaa acaaaaaaat
     2041 aaaactccac attttgctct gcaaattttt acaaccctta aaaatcttca taaacttaac
     2101 gataactata agcatacttt actaaatgct gctaaattat gccatattgg agaatattta
     2161 aatttctatt ttgctaatga acactctgct cattttgtac taggtggatt aaattatgga
     2221 ttttcacata aagaaaaagc tttaattgct agcattatta agcttaatgg aaaaaaagtt
     2281 aacccttata atcttgaacc ctataaacaa cttttaccca atattcatac catttcatgg
     2341 cttaatttta ttttgtgcct agctaaaact ttaagcacaa atgaagataa gattgatttt
     2401 gcttttgcaa acaatactct ttatatatat caagaaaaca aaattcttaa tttacccaaa
     2461 gatgagctca aaaaaattgc aaaaccagct accatagcat tagcaatcaa tcaaaaaatt
     2521 taagattttt tacctttttg acgctgctct ataagatttt gaattctttt tttattctct
     2581 tcaaaaaaag aatcaaaatt tttctctgtt ttttctgtat gttttattat ttgttcctct
     2641 ggaatttcaa cactttctaa aagcacattg gaattaccta ttatcattgt ataacgttta
     2701 ttagcgtgat caaaaacaac aagttgatta tttttatcta aaaatctttg gaaaatcata
     2761 gtaaaatctc tagaaacatt gttattttta taaaccatag tctttttaaa ccaccaaagc
     2821 actattaaca aaataactaa aatcagcatt actaagatat aatttgtata atcataccct
     2881 tctaaacttg tactttttgg tttaggcatt aattcttgag aattattcgc agtagttgta
     2941 ggtacagatt cgatatttgc ttttccttgc tctatagctc gtatccttac tccaaattta
     3001 tcattgatag agctaagttc taaattaata ttttgtttgt tttgtagcat aatataggta
     3061 ttattatttt tagaactaat actaatttta tctacaagtt gagagttaag ttcttttaat
     3121 tcatctttag aatacgttaa atcactaaaa gttaaaagag ttaaattttt ttcttttttt
     3181 tgagaaatct tgccattata ggcattatca aaagaaagca ttaaatctac tcgatcattt
     3241 ctatcgtaga tattaaaact aatcagctca acactatata aaggtaaaat taaaaaaaat
     3301 aatactagca atctcattta aatttctttt ttaaagtatt gaagcacagt cttagaatcc
     3361 aaaatttcat taattcttat agcgagattt ttttcataaa ccataacctc gcctttgcca
     3421 aaaattcttt tattgatata aagctcaacg ctttctccag caggcttttc aagatcaata
     3481 accgaaccta cttcaagttt taaaagctcc gctacactca tatttgtagt tccaagctcg
     3541 cttacaaaat ctactgtaat atctaagata tcttcataag attgtaaaag cccatgatga
     3601 atgttaaact ctatatcatc gctcattatt tgcaatatcc tattctaaaa taacaatttt
     3661 caaatttata agttaaagct tcatctagaa ctatttcaga aaaatcaact tttcctaaat
     3721 attccggaat tccgagttta tactcgtcat cacccttggc atcatttaac aaatttttag
     3781 cataacctat aatctgattg gcacattctt tagttaaatc gcaccagtca tcttctttaa
     3841 atttttcatc attaattaaa atttctgcaa ttttttttaa aaattctttt ggaaaaaata
     3901 aataaaaatt acattctcct tcgcttttgc ccatgatagg aatactcgct ccataaagtt
     3961 caccgcttat atcttgagct gcttcaatgc gaagtcttaa gatatgctcg caaaaatgag
     4021 tgatggaata ctcaagaatc tttaacatag ctaccacctt tataaaaaac ttaatttaaa
     4081 attatagtaa atataaaata aaaatatgtt ttaaaatttt attttttgaa aatttcttca
     4141 atatctttca ttattatatc caaatttcct tgtttaaaac actttactat gctagttccc
     4201 acaatcactc catcagcaac ttttctcatt ctttttacat cttgattatt ttgaatgcca
     4261 aagcctacaa aaataggcaa atttgtaaaa gatctgattt cttttacttt atcttgtaag
     4321 attgcttctt cgacactttt cgtacctgta atacctatgc ttgctaataa ataaataaaa
     4381 cctttagcat gttttactaa ctttttaacc ctttctttag gggttgtaac acttacaagt
     4441 gtaattaaag ctatattata tctttcacac tctttaatta aatcatcact ttcttcaaaa
     4501 ctcaattcag gcacaatcaa agcacaaatc cctaaagatt ttgctttttt cacaaatttt
     4561 tccaagccat aagaaaaaat taaattataa taaaccataa aaaccaaagc ttttttagtt
     4621 tttatcctag ctaaaagctc aaaaacacta tgaatatcca cgccttgatc aagagctatt
     4681 tttgccgcat ctgcaataat ctcaccatcg gcaataggat cactataagc aacaccaagt
     4741 tctaaaatat caatagggct ttgatccaat ctttgcaaaa aagcttcact tgtttgaaga
     4801 tttggataac ctaaaaccgt ataagccaca tttgcatttt ctttataaaa ttttctaaaa
     4861 tcaaccataa atcacccctt ttttataatc tctaatcatt tgcatatctt tatctcccct
     4921 gcctgaaaga tttactacta tcacgctttt cttttttaaa gttggacaaa gtttttctaa
     4981 aaatgccaaa gcatgcgaac tttcaatcgc tgcaataata ccttcttctt tacaaagtaa
     5041 ttttaaagcc tgcatacatt cttcatcact tatagcatga tattgcgctc ttttgctttc
     5101 aaataaaaaa gcatgcaaag gaccaattcc tggataatca agccctgcag aaacactatg
     5161 tacaggcaag atattgccta aatcatcttg taaaaccttg gttttcatac cgtgaataat
     5221 gcctgttttt cccttattta aagtcgctgc atgataaggc gtatcaatgc caagcccccc
     5281 tgcttcaata cctataagtt taacattttc atctttgata aaatcataaa aaatcccagc
     5341 tgcattgctt ccacccccaa cagctgcgat aatataatct acttttttat tgagtttttg
     5401 aagttgcatt ttgcattctt ttcctataat actttgaaaa tgcattacca ttttaggata
     5461 aggataagga cctaccgcac ttccaaccac ataaaaaata tttttaatat ctccaaccca
     5521 agcttgaata gccgcagtag tagcttcttt tagagtttta agcccacttt gtactgcatg
     5581 aattttagca cccaaaagct ccattttata aacatttaaa gcctgtcttt gcacatcggt
     5641 tgcccccata taaatttcac attcaagtcc taaaagtgct gctgcagtgg ctgttgcaag
     5701 cccgtgttga cctgctcctg tttctgctat gatttttttc tttcccattt tttttgctaa
     5761 aagggcttga gcgatggcat tattgatttt atgtgctccg gtatgattta aatcctcgcg
     5821 ttttaaataa atttcatgct gatatttttt gcttaaattt ctagcaaaat aaagtggagt
     5881 aggacgccct acataagttt ttaaaagctc gtttaattct tttttaaaga gtttatcttt
     5941 agaaaatttc aaaaaagcac cttctagctc atttaaagca aacattgcac tttcaggcaa
     6001 aaactgccca ccaaaatccc cataatacgc ttttttcatt ttttcaactc ctttaaaatt
     6061 tgttttattt tgttgatatc ttttaagcct ttttcatctt caagttttga attaagatct
     6121 aaaattttag ctcccgtttg tacagcctta tgaacattat ccaaacctat gcctccagct
     6181 aatataaaat ctttagtata agaacctaat aaagtccaat caaaacttat tccattaccg
     6241 ccctttaaaa ttcccttagc atcaaaaagt actaaattag caaaaatttc actttttaaa
     6301 tctaaactat tttccacgct aatcacctgc caaacaaaaa cattttgcac ctttaaaatt
     6361 tcaaattctt ctttggtaat agtgcgataa atttgtatcc catcaagctt agcttcttta
     6421 atacatctta aaatttgttc caaattttca tctacaaaaa caccgacaac ttttttatct
     6481 ttttcatgaa aaattgcact taaatttctt gcttgttcta aactcactct tcttggactt
     6541 ttagcaaaaa taaatccaaa aaaatcaata tttaaaaaag ctaaatcttt ggcatttttt
     6601 tcatctttaa taccacaaat tttaagcttt agcataagct tgatactcct taaaatattc
     6661 tataacctta cctgaataaa tggcttctaa aatcatatct ttagccacta aaggcgaact
     6721 tgctttattg gctgtataaa gtgcaaacat agcatttaaa actaccaaat caaattttgc
     6781 cccttgcatt ctaccgctta aaatatcttt taaatcttta gcgttgtcat atgcactaga
     6841 tcctatgatt tcactatgaa aagctctttt aaaaccaaat tgttcaggac agatagaata
     6901 ctctaaaatt tctccttcac aaagctcata aattttactt tcatcgcaaa tactaagctc
     6961 atccatacca tcatttcctc ttaccactaa agcttttttg cgtcctaaat tttttaaaac
     7021 ctctatcaaa agcctatgca caggtgcgtg ataatttccc ataagttgat attttaactt
     7081 taaattaggg tgcaataaag gacctaaaac attaaaaacc gttcttactc caagtcttga
     7141 tctgatctct ttaagttctc ctactaaagg atgaaaaaat ggagcatgta aaaaactaag
     7201 cccttgatta tttagttgtt ttaaaactga ttctaaagta tttggagtag ttatacttaa
     7261 agcttctaac acatctgtac ttccactaga acttgaaatg gcacgatttc cgtgtttggc
     7321 tacttttact cctaaagctg ctaaaataaa agcactagtc gtagaaacat tgatactttt
     7381 aaaaccatct ccacccgttc cacaaatatc aatcatctca ctctcatcac taaaagtttg
     7441 agaatatctt aaaatttgtc ttacaaaagc acttaaagat ttttcgttta aagacttttc
     7501 agtgattaaa atcaacaaag ccgccacttg caaaatttca taatctttag acataataat
     7561 cttacaaatt tgctcaaaat catcgctttg taaaaaatga ttttcactca ttttttgcaa
     7621 ataaaaactt aaaggatttt cttgtttttg tgattttttt atatcttgtt ttaaaaaatt
     7681 agaaaaaagt tgtaagccat attcactaaa atagctttca ggatgaaatt gcacaccata
     7741 ataaggtaaa tttttatgtc ccaaagccat aatcacaccc ttttcatcaa gggctaaaat
     7801 ttcaagctca tcactaagct gtttaacctc taaagaatga taacgcatca cgctaaaatt
     7861 taaaggtaaa ttagaaaata attcattttc cctgcactgt tttatcaaag aattttttgc
     7921 atgcataggc tcttgcatct taaccactaa agaatcaaaa gctaaagcta aagcttgatg
     7981 tcctaagcaa atgcccaaaa cagggatatt aagccttgct ttaaaaattt caagacaaat
     8041 cccactttga cttggatgct ttggaccagg acttaaaata atatgagtag gatttaaatt
     8101 tttaatttca ctcagagaaa tttcatcatt tcttcttact aaaatttcat cattgctgag
     8161 ttgctctaac atgcttttaa cattaaaaac aaaagaatca taattatcaa ttaaaagtat
     8221 cattgatttt ccttttttaa attttcaaaa gctaccaaaa gcgccctacg tttagcacaa
     8281 atttctgcat attctttttg actctcactt tgcaaaacaa tacccgcccc acttgccaaa
     8341 taagccttat cttgagtaaa aaaagcgcaa cgaattaaaa tcgctaaagt tatgtcttcg
     8401 ttaaaattta aaaatcctac cgcaccacca taaactccac gatcgcaatc ctcaagctca
     8461 ctaatgatct ctaaagctct tattttagga gctccgctta aagttcccgc tggaaaaact
     8521 gcctcaatca catcgaaaat actcgcatct tctttcatat tggcatacac ttcactcact
     8581 atgtgcatta caaatttatt tttaataata gaaaaaagat tttccactct tgtttgagtg
     8641 ccaaatttag aagcatcatt tcttgccaaa tctacaagca tcttatgttc actaagttct
     8701 ttttcatcac ttaaaagatc tttttctaaa gctaaaagat cacagttatt ttccaaattt
     8761 ctagttcctg caataggggc taaataaatc tctctttttt taatttttaa taaaaactct
     8821 ggagaagaac ccaaaacaac accatatttg cttggaaaat aaaacatata agcact
//
LOCUS       DAEBKH010000063         8791 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.063, whole genome shotgun sequence.
ACCESSION   DAEBKH010000063 DAEBKH010000000
VERSION     DAEBKH010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8791
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.063"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..632
                     /locus_tag="KIL20_001004"
     CDS             <1..632
                     /locus_tag="KIL20_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HBD2721040.1"
                     /translation="EYIFEKVDFWGLEFKIKKGVLIPRYDSEILLFQILNLCKKNTFN
                     GILEIGFGSGILSIVLAKELGLKITACDINPKALELALENAKLHKVDHLIDFKLCNFK
                     QIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDKKVKF
                     LACEFGYDQKEILEKILYQNNFIVDFFKDEQDYNRAFIAKFTNMRYDKK"
     gene            645..1115
                     /locus_tag="KIL20_001005"
     CDS             645..1115
                     /locus_tag="KIL20_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HBD2721041.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFQIKFSKFMLSLLILILSLIFV
                     FYFTNTIIELQNLGENATKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            1153..1902
                     /gene="flaC"
                     /locus_tag="KIL20_001006"
     CDS             1153..1902
                     /gene="flaC"
                     /locus_tag="KIL20_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HBD2721042.1"
                     /translation="MMISDATMMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATGGLSID
                     NQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            1938..2570
                     /locus_tag="KIL20_001007"
     CDS             1938..2570
                     /locus_tag="KIL20_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HBD2721043.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASTIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKESIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(2583..6185)
                     /gene="dnaE"
                     /locus_tag="KIL20_001008"
     CDS             complement(2583..6185)
                     /gene="dnaE"
                     /locus_tag="KIL20_001008"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HBD2721044.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGMEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTREYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGPEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGAKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            6404..6610
                     /locus_tag="KIL20_001009"
                     /pseudo
     CDS             6404..6610
                     /locus_tag="KIL20_001009"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SelT/SelW/SelH family protein"
     gene            complement(6623..6952)
                     /locus_tag="KIL20_001010"
     CDS             complement(6623..6952)
                     /locus_tag="KIL20_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HBD2721045.1"
                     /translation="MKLYGIKNCNSVKKAMDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(6949..8289)
                     /locus_tag="KIL20_001011"
     CDS             complement(6949..8289)
                     /locus_tag="KIL20_001011"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HBD2721046.1"
                     /translation="MWTKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVVK
                     IGRIAGQFAKPRSSDFEELNGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAT
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLRGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            complement(8313..8726)
                     /gene="uraH"
                     /locus_tag="KIL20_001012"
     CDS             complement(8313..8726)
                     /gene="uraH"
                     /locus_tag="KIL20_001012"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HBD2721047.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
BASE COUNT         3008 a         1552 c         1182 g         3049 t
ORIGIN      
        1 ttgaatatat atttgaaaaa gtggattttt ggggcttaga atttaagata aaaaaaggcg
       61 ttctaatccc tcgctacgat agtgaaattt tactttttca aattttaaat ttatgcaaaa
      121 aaaatacttt taatgggatt ttagaaatag gatttggaag cggaatttta agcattgttt
      181 tagccaaaga acttgggtta aaaatcacag cctgtgatat caatcccaaa gccttagaat
      241 tagctttaga gaatgccaaa ttacacaaag tcgatcactt gattgacttt aaactttgta
      301 attttaagca aattaaagaa aattatgatt ttattttttc aaatccaccc tatattaaaa
      361 attcatatcc tatagatatt tgggtgcaaa aagaacccaa agaggcttta tttggtggag
      421 aaaaaggata tgaaattcta gaagaaatca tacatttttc ccttgataaa aaagttaaat
      481 ttttagcttg cgaatttggc tatgatcaaa aagaaatttt ggaaaaaatt ttatatcaaa
      541 ataatttcat tgttgatttc ttcaaagatg aacaagatta taatcgtgct tttatagcta
      601 aatttacaaa tatgcgctat gataaaaaat aaaaggagaa actcttgaaa gctgttaatt
      661 tatttttact tgcctccatc ataggggttg aactcatact aggaatagtt gttgcaccaa
      721 caattttttt tcctcaaaat cttataggag aaggagtgtt gagccatttt caaagtggct
      781 taatgatgac gcaaattttt attaagatgg gatatttgct gatttttgtt tcagtggtta
      841 attttttata tgaaatttat tctcttataa aagatgaaat gaaatttcaa ataaaatttt
      901 caaaatttat gctgagtttg cttattttga ttttaagctt aatatttgtt ttttatttta
      961 ctaataccat aattgaactc caaaacttag gcgaaaacgc tacaaaaact caagaattta
     1021 tcagtatcca taatgcaagt gaagtggtga ttaaaatcat cttgataatg caagtttttt
     1081 tatatttctt aagctttaaa atagcaaaaa aatgataaaa tataaataaa tccgaaagag
     1141 aaggagtagg ccatgatgat ctctgatgca actatgatgc aacaaaatta ttatttaaac
     1201 aatgcacaaa aagctagtga taaagcttta gaaaatattg cagctgttcg cgcaataagt
     1261 ggagttgata gtgctaattt agctattgct gattctttaa gatctcaatc aagcactata
     1321 gatcaaggtg tcgcaaatgc ttatgatgct ataggggttt tacaaattgc agatgctagc
     1381 cttaccaata tctctcaaag cgcagataga cttaatgaac tttcagtgaa aatgaacaat
     1441 gctgcactta atgattctca aaaaggaatg ctaagaacag aagcaacacg catacaagaa
     1501 tccatcaatg attcttttaa taatgcaact tataatggaa aaaatgtctt tcaaactatg
     1561 aattttgtag taggtagcgg aactgaaact acaaatttaa atccattagc aacaggtgga
     1621 ttaagcatag ataatcaaga tagtattaca aattttatgg atcaacttgg aagtttaaga
     1681 agtgaaatag gctcgggtat caatgccatc acatcaaata ttaacgcaag tgttcaaaat
     1741 agcatcaact caaaagcagc tgaaaataat ttactaaata atgatatggc aaaaaatgtt
     1801 aatgatttta atgccaatta tctaaaagaa aatgctgctg cttttgttgc tgcgcaatcc
     1861 aacatgcagc ttcaaagcaa aattgctaat ttattacaat aatataagcc ctaaataggg
     1921 cttatttctt tatcaaaatg actttagagc aaattttaga aaaaaccaaa aacgttcgtc
     1981 ttgtagccgc aagcaagtat gtcgatgcaa gtacaattga aaagcttttt gatcaaggta
     2041 tagtagaatt tggagaaaat caagtccaag ctctagcaca aaaaaaagaa aatcttgatg
     2101 aaaaaaaact agacataaag tggcatttta taggaacgct acaaagcaac aaaatcaatc
     2161 tcttaatcaa acaaaaacct atattatggc actcttgtaa tggtattaaa atagctaaag
     2221 ctatggacaa aagacttgat tataaattaa atactttatt agaaatcaat agtgcaaatg
     2281 aaaatagcaa aagcggtcta gatccaaatc aagctgtaga agaatattta caaatacaag
     2341 aagaatgctc taatctaaat ctttgtggcg taatgagcat aggatcacac agccaagata
     2401 aagaaagtat tatcaaaagc tttgaaacta catttaaaat ttatgaaatt cttcaaaaac
     2461 atggggctaa aatttgctct atggggatga gtaatgattt tgaaattgct ataaaatgcg
     2521 gatccaactt agtaagactt ggaagcattt tatttaaaaa tcttaagtaa gaacaatctt
     2581 acttaagcat atttattaga aatttcctct actatactat cagagataat aaaatctgta
     2641 tgataaagca agcaagatcc cgcgctaata acttttaaaa caagtttttt attgtttttt
     2701 tcattaggat tatgtgcatt tctagcaatt tcatgaattt catagattaa ttctctattt
     2761 aaccttgtca aatctagctc tatgatattt ttttcaaatt ccttaggttc tgcggtaaaa
     2821 tgattttctt ctttattttt gaaatctttt tttgctccaa atttttttat agctttaatc
     2881 tcgccatctt caagactttg taaatcttta attgctttta aaaaaaagct aggcttctcc
     2941 cctccctcag ctttaaatcc caatacaaaa ccataggcat tattttttaa attttcatct
     3001 ttgatgatat tttctatttc ttctacattg ctttcaaata cagtagcatc aaacgaagaa
     3061 taataatcca aaatttcaat tctaccataa cgcttattat ttttactcat catggatttg
     3121 aaatcttcaa ttttacctat acttaaaatt tctccattgt tttttaaact ttcaaaatct
     3181 aaacttttaa cataatctat ggcattaatt tgttcataaa atcgatctaa aggatggcct
     3241 gaaacataaa ttcctaaaat ttctttttca tatcctaatt tttccatcac ttcaaattct
     3301 tcatttttgg gagtaaaatt tacttgaaca cctgaagtta attcctcttc accaaaaaga
     3361 gaacttgcag cattttttct tacttcagcc atcttacgcg atgcttcgct aagattttcc
     3421 atattatcaa acaaagcttt tctcgtaaaa ccaaactcat caaaagcccc tgccttaata
     3481 agactttcta atgttctgcg gtttatcttg gtaggatcta tcttacctaa gaaatcatta
     3541 atatccttaa attctccatc ttgtcttgct tcaagtaaat tttcaactgc aggaataccc
     3601 acacttttta tagccccaag tccgtatata atagcatcct tgccatcttg ctctaaagca
     3661 ctaaattcac ggatcgcttt gttaatcgat ggaggtaaaa gtttaatatt catttttttc
     3721 atctcatcaa tataaacagc aattttatcc acattgtttt cttcgcttgt taaaagcgct
     3781 gccataaatt cactaggata ataagttttt aaataagctg tttgaaaagt aatcaacgca
     3841 taagccgcag agtgagattt attaaaacca tatcctgcaa attttacgat aagctcccat
     3901 aaatcctcag cttttgctct atcatatcct tgtttttctg ctccatctgc aaaatcagtt
     3961 ttaagctttt tcatcttctc aggatctttt ttacccatag cacgacgcac tacatcagca
     4021 cctcctaaag aaaagccacc tataatttga acaatttgca taacctgttc ttgataaaca
     4081 ataaccccat aagtaggctc taaaaccttt tctaaactgt caaaaggata ttctatactt
     4141 tttaaaccat gctttctgtc gataaaatca tcaagcattc ctgattccat aggacctgga
     4201 cgataaagcg caagaaccgc aatgatatct tcaaaacgct ctggttttaa gcgtgcattt
     4261 aaactttgca taccgcctga ttcgatttga aaaattccca aagtatttcc actttgtatg
     4321 gttttataaa ctttgctatc atttacatct atagtttccc aaataatgtc tttattgtaa
     4381 cgctttttaa taagcttgat cgcattattg attactgtta aggttttaag acctaaaaag
     4441 tcaaatttta tcaaatccac atcttctaaa tgatctttag aatactgcgt taccaaatgt
     4501 ctttcatcat ttttactttg tctaaaaagc ggagttttct tccataaact ttcattagaa
     4561 attacaacac ctgctgcgtg catacccgca ttgcgattta atccttctaa agctcttgca
     4621 tactcccaaa cttcaggacc tttaggatga cgatcgataa attctttaat tttaggttct
     4681 ttttcataag cagcatcaag agtgatttta agctcttcgg gcacaagttt agcaagctca
     4741 tcagcatctt gaatactcat atcacaaact ctagccacat cacgaatcac ccctttagcc
     4801 aaaagtttac caaaggtaat cacctgtgca actttatctg ctccatattt atcaatcaca
     4861 tagtcaatca cttcagcacg tctgtcttga caaaaatcca catcaatatc aggcatgctc
     4921 acacgctcag gatttaaaaa acgctcaaaa agtagactat aaggaatagg atctaaatcc
     4981 gtaatcctta aacaataaga aaccaaactt cctgcagctg atcctcttcc agggcctact
     5041 ggaatacctt tatctttagc cactttaata aaatcatgaa caataagcat ataacctgaa
     5101 aatttcatat ttttaatgat gttaatttct acttcaagtc tttgtttgta ttcttcatgc
     5161 ttgctttcat cgataaattt taatctctct tcaagtccct ttttacaaag ttcttcaaaa
     5221 actatgtcat cattatcaaa gctaaattct tttgtttctt caggcaaggt aatattatga
     5281 tctttagcat attctcttgt aaatttaaaa ttcggtggag tgggattgcc aagattaagc
     5341 tctaaattac atttttgcgc gatttcttgt gtattttcta tagcttctgg aatatctgca
     5401 aaaagctcac tcatttgctc agggctttta acataaaatt catgcacact atgacgcatt
     5461 ctatcaggat cattaagttt ttttcccata gctatacaca taaaaacctc atgggcagcc
     5521 gctctttctt tgaaagtata atgcgtatca tttgtagcaa taatttttat atttaattct
     5581 ttagaaagtc tgataatatc atcatctatc attctttgat cgcctatacc atgacgcatg
     5641 atttcaaaat aaaaatcatc tttaaaaact tttttatacc atagcgccgc ttcttttgct
     5701 gcttcatagc cttttgcacc aaaacgcaca tttctttcac tataagtatt taagtgccaa
     5761 tttacttcac cttgcaagca agcagaagaa caaataagac cttcgctatg atcttccaaa
     5821 agctttttat tgatacgcgg ataataatac aaacctttaa tataactttg agaacttaaa
     5881 tacattaaat tttgatatcc gatctcattt tttgcataca aacaaaggtg aaaacgctga
     5941 cgagaacttt tatcatctaa ttcatcgtga ttatgcaaat acgcttccat accaatgata
     6001 ggttttaaac cttgtgcttt cattgtttga taaaaatcaa ttgccccaaa catatttcca
     6061 tgatctgtca tagccacact tgtagcaccc tgctctttta aagtcaaagc taattcttta
     6121 agcttattgg ctccatcaag caaagaatat tctgtatgta aatgtaagtg tgtaaattga
     6181 ctcattttct tcctttagtt ttttaaggct tattttaaaa ttataaattt ttctcgctga
     6241 atttgaaaga aattggtcct aaatttcaac ttaaatttta caaaaaggca aaaattcagc
     6301 caaaataaac tataataaaa tctaagattt taatcttaat aaaaagaact tttcaaagga
     6361 tgaaatgatg aaagtaaaaa ttgcttattg caatctttga aattatcgcc cacaagctgc
     6421 aagggttgca gaagaactac aaagcgattt caaagatgtt gaagtagaat ttgaaattgg
     6481 cggcagaggt aattttatcg ttgaagtaga cggaaaagtt atcttctcta aaacacaact
     6541 tattaattgc gaaagtgaaa gatttccata tcaaaatgaa attaatcaat taataaaaaa
     6601 tagagtgtaa tcaaacactc tatcataaca ttttctcata ttccttacca atatatatgt
     6661 tttgctcata ctcgataata ggacgcttaa tacaacttgg attttctaat acaatttttt
     6721 caagttcttt ttcatttaaa tttttaactt tttctttgtt taaaccaagt tttttagaag
     6781 ttaatccagc agtattgata agttcttcaa aagatttttg ttttaaccat gtgtataaaa
     6841 tatcttgatt aatcttttta atatccataa aatcaaacac aatgcctttt tgtgttaaag
     6901 catccatagc tttttttaca gaattgcaat ttttaatacc ataaagtttc attttctagc
     6961 cttttttacc aaatctgcga ttaaaaaagc aagttctaat gcttgatccg cattaagtct
     7021 tggatcgcat tgagtctcat aacgatcttc caagctttga gcagtaacat tgcttgcacc
     7081 acctgtgcat tctgttacat ctttcccagt catttcaaga tgcaccccac ctggataaac
     7141 tccttcgctt attgcaatct caaaaaaaga tctcacttct tgcatgattt tatcaaactc
     7201 acgtgtttta aaattacctg cttttactgt atttccatgc ataggatcta tgctatatac
     7261 taaatttaaa ccttcacttt taagtttaga gaaaattttt ggcaaattat tgataatttt
     7321 atctgcaccc atgcggataa taatatttaa tcttccttct tcattatttg gatttaaaac
     7381 atttgctaaa gctatgatat catcagcact tgcactaggt cctattttaa cccctaaagg
     7441 attttttact cctcttaaaa aatgtacatg agcttcatca agtgcccttg ttctttcacc
     7501 tatccaaagc atgtgagctg aacaatcgta aatttctcca cttaaactat ccactctagt
     7561 taaagcttct tcataaggca aaagtaaagc ttcatgtgaa gtataaacac taacttctct
     7621 taggcttgga gtattacttg tattaatccc acaagcttcc ataaaagcta aagcttgtga
     7681 aattttttca ctgatatcag tatattgctt atggagttca ctctttttta aaaaacccaa
     7741 attccaacga tgtacttcat gcaaatctgc taaaccaccc ttagcaaatc cacgtaacaa
     7801 atttagcgtt gttgcacttt gataataagc ttcaagcatt ctatgtggat caggaatgcg
     7861 tgcttgttcg ctaaattcaa aaccattaat aatatcacca cgataactag gaagacttat
     7921 accatttaac tcttcaaaat cactacttct tggcttagca aactgccctg caatacgacc
     7981 aatttttaca acaggacatc caccggcaaa tgtaagcact atagccattt gaagtaaaat
     8041 tttaaacata tcacggatat ttacagcgcc aaaattttca aagctttcag cacaatctcc
     8101 accttgaagt aaaaaagctt cttttttgca aactcttgct aaagactttt gaagatttct
     8161 cacttctcca gcaaaaacca aaggaggaag cttctcaagt cttgctaaaa ctctattcat
     8221 ttcctcttga tctggataga taggttgctg ttttatagga tagtttttcc aagaattctt
     8281 agtccacatg gttttttctt tcgttttatt tatcagcttc ctctataagt tgaataacca
     8341 aaaggagaaa gggttattgg aacatgataa tgtttttgat ctttagaaag ctcaaaactt
     8401 acctctacaa aaggataaaa agtatttatt ttgtgtgatg tgtaatagtc ttttgtgaaa
     8461 aatttaagct tataaattcc aaaagcccta ttttcagctt tttcatatgg taataaatct
     8521 cctattctac cattttcttc ggtaaattct tcacttactt ttttccactg ttgatttgct
     8581 tccaacttat aaagctcaac ttttacttta ggagcaggtt gtccagaagt aatatccaag
     8641 acatgagtac ttaattgata ttcagtagca ctcaaaaaca ttggcacgct tgctagtatt
     8701 aataaagttt ttttaataga aaacattttc tctccttgta taatatttac aaggaatatt
     8761 atacaagagt attattaata attaaaatca a
//
LOCUS       DAEBKH010000064         8745 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.064, whole genome shotgun sequence.
ACCESSION   DAEBKH010000064 DAEBKH010000000
VERSION     DAEBKH010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8745)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8745)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8745
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.064"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(173..667)
                     /gene="luxS"
                     /locus_tag="KIL20_001013"
     CDS             complement(173..667)
                     /gene="luxS"
                     /locus_tag="KIL20_001013"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HBD2721048.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSVAK
                     AWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
                     LENA"
     gene            782..2200
                     /gene="gatB"
                     /locus_tag="KIL20_001014"
     CDS             782..2200
                     /gene="gatB"
                     /locus_tag="KIL20_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HBD2721049.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHENNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKARFIDELGIKESDAEVLISSLEMSRFFESLISQNL
                     NSKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKDKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            2197..3093
                     /locus_tag="KIL20_001015"
     CDS             2197..3093
                     /locus_tag="KIL20_001015"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HBD2721050.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGMRAWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGAKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILVELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGTSVQEATQSLLKQND"
     gene            3103..4281
                     /locus_tag="KIL20_001016"
     CDS             3103..4281
                     /locus_tag="KIL20_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HBD2721051.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDANGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCRFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILET
                     "
     gene            complement(4278..5804)
                     /locus_tag="KIL20_001017"
     CDS             complement(4278..5804)
                     /locus_tag="KIL20_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HBD2721052.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWIASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKDQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRSTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            5946..6752
                     /locus_tag="KIL20_001018"
     CDS             5946..6752
                     /locus_tag="KIL20_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HBD2721053.1"
                     /translation="MRGIFYIIALFSLLNADELTEALAKNNNQNSWEHFDYENTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENAQVKNLSSLYEGENNSLL
                     FQKELFVAQDNYNYSWGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKNLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(6749..8125)
                     /locus_tag="KIL20_001019"
     CDS             complement(6749..8125)
                     /locus_tag="KIL20_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HBD2721054.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIIAGIVLGYIDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVAQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVTAIGILLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
     gene            8394..>8745
                     /gene="cetC"
                     /locus_tag="KIL20_001020"
     CDS             8394..>8745
                     /gene="cetC"
                     /locus_tag="KIL20_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HBD2721055.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKS
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKAKDGNFYWVFANVSASFDTNGNII
                     NYYSVRRAPNRKSLS"
BASE COUNT         3082 a         1234 c         1458 g         2971 t
ORIGIN      
        1 ttatccactt tttggacctt tggaaacata atgttaagcc aaaggacgca ctagatacta
       61 cacatctcgc acatcagttt cattttttct ccttttaaaa taataaaatt tcaaaatcat
      121 atataaaaat atattaatta aagcttaatc gtctaaaaaa taaagattct ttttaagcat
      181 tctcgagttt taattctttg ttattcatta tgctaatacc tagatttaaa accttttggg
      241 caatttgttt ggcttcatct aaagaatgca ttgcgcaagt tccgcattga tagatattaa
      301 gttcaggaat tttgctttga tcgcttacgc ttaaaacatc tttcatagct tcttcccaag
      361 cttttgcaac acttttttca tctggtgttc caattaaact catataaaaa cccgtgcgac
      421 aacccatagg tgaaatatca ataatttcaa ctgaatttga attaagatga tctctcataa
      481 atcctgcaaa taaatgttct aaggtatgtg tacctttttc gctcataatg tctttatttg
      541 gtatacaaaa acgcaaatca aacacgctaa tatcatcacc cttaggtgtt ttcataactt
      601 tagctaaacg cacagcagga gctggcattt tagtatggtc aactttaaag ctgtctaata
      661 atggcatttt aactccttaa atataaattg tctaagaatt atagcattta aagttaatat
      721 ttaaagcctt tctaaaagaa aaaaagataa aataaaacat ttaaaaattc aaggaaattt
      781 tatgtttgaa gtagttatag gtcttgaagt tcatactcag ttaaatacaa aaacaaaaat
      841 cttttgctca tgtgcaactt cttttggaga agctccaaat accaatgttt gtcccacttg
      901 tttggcctta ccaggagctt tgcctgtttt aaatgaagag gctgtaaaaa aagctatagc
      961 ttttggaaaa gctgtcaatg caacaattaa taaaaaaagt gtttttaatc gtaagaatta
     1021 tttttatcca gatttaccta aagcctatca aatttcacaa tttgatatcc ctatagtaga
     1081 aaaaggtgag ctttttatca atgtaaaggg tgaaaataaa cgcataggta ttacaagagc
     1141 acacttagaa gaagatgcag gtaaaaatat ccatgaaaat aatttttcta aagtggattt
     1201 aaatcgtgca ggaactcctt tgcttgagat tgtcagtgag cctgagctta gaagtagcga
     1261 tgaggcggtg gcttatctta aaaaacttca ttctattata cgctttttag atatttcaga
     1321 tgcaaatatg caagaaggaa gttttagatg cgatgcaaat gttagtataa ggcctaaggg
     1381 cgatacaaaa ctttatacta gagtagagat taaaaatctt aattcttttc gttttatcca
     1441 aaaagccata gaatatgagg taaaaagaca aagtgaggct tgggaagatg gaacttacga
     1501 acaagaagta gttcaagaaa ccagactttt tgatacaaca aatttagtta caagaagtat
     1561 gcgtggcaaa gaagaagcgg ctgaatatcg ttattttcca gaccctgact tgcttcctgt
     1621 tttgttaaaa gatgagtttt tggatattaa aattcctgaa cttcctgatg agaagaaagc
     1681 acgctttata gacgagcttg gtataaaaga aagtgatgcc gaggttttaa tcagttcttt
     1741 agaaatgagt cgtttttttg aaagtcttat ttctcaaaat ttaaattcta agctttgcgt
     1801 aaattggtta aatactgaac ttatgggact tttaaaagga gaattgacta tagaaaattc
     1861 tcccgtagat gctcaaaagc ttggagtttt aattaaacgc atagaagatg gcaccatcag
     1921 tgcaaaagcg gctaaagatg tcttagcttt tgtatttgaa aatactagcg tggaaattga
     1981 tgaagctata gaaaagctag gacttaagca agtaagtgat gattcagcca tagaagcggt
     2041 gattgaacaa attttaaatg caaatgccga taaggttgca gagtataaaa gtggtaaaga
     2101 caagcttttt ggattttttg tgggtcaaac aatgaaagaa ggcaaaggag cttttaatcc
     2161 tgcaaaagta aatgaaattt taaaaacaaa gcttggttga tgcgtatagc ggttattggt
     2221 gcgggaaaat ggggcagtgc tttacatcta gccttaaaag aaaatcacaa ttgttttatt
     2281 agttctttgc atcagcgtga tttagaagat tttgttagca taaaagaagc tttagaatgt
     2341 gaatatcttg tttttgcttt aagttctcaa gggatgcgtg cttggcttaa agaaaatttc
     2401 atcaacaagg gacaaaaaat tttaattgct tcaaaaggca tagaagatca aagttgtcaa
     2461 tttttagatg aaattttttt agattttgta ccaaaagaaa atttttgtgt tttaagcggt
     2521 ccttcttttg ctgctgaagt aatgcaaaaa cttcctactg ctttgatgat tagcgggata
     2581 aatcaagagc tttgtaaaaa atttgcaagt tttttccctg attttattaa aacttatatt
     2641 gataatgatg ttcgtggtgc tgaaatttgt ggtgcttata agaatgtttt agcaattgca
     2701 agtgggatta gtgatgggtt aaaacttggc aataatgcaa gagcggcact gatttcaaga
     2761 gggcttatag aaatgcatcg ttttggtaaa ttttttggtg ctaaagaaga aactttttta
     2821 gggttaagtg gggcagggga tttgttttta actgcaacga gtgttttatc aagaaattat
     2881 agagtaggtt taaaactggc gcaaaatcaa aaattagata gtattttagt cgaacttaat
     2941 gaagtagcag aaggtgtaaa aactgcttat gctatagaaa aactagcaaa aatgaaagga
     3001 atttatacac ctattgtaaa tgaagtagtg gcaattttta agggtacaag cgtgcaagaa
     3061 gcaacgcaga gtttattaaa gcaaaatgat taaggaaaaa tcatgataat taaaaatgca
     3121 aaaatttatg gagattcttt acaagatata gagattaaag aaggaaaaat taccaatatt
     3181 ggttctaatt tacaaggcga agaaatttta gatgctaaag gtatgacttt acttccatct
     3241 tttgtggatt tgtgtgtgag tttaaaaaac gataaatttt ctttagctaa tttagagctt
     3301 ttagaaaatg agtgtctaaa aggaggaatt tctagtatag ttttgcgtga ttgcatggat
     3361 tttgatgaag aaagttttgc tttattttta caaaatttag ctcaaagaaa gatgcaaatt
     3421 ttttcaagtg tgcgggttaa ggatgcaaac ggcaagctta aaaatttagc cactctttta
     3481 aataaaggtg cttgtgctct agaacttgac agctctttag atgcaaatac tttaaaagta
     3541 agttcacaat atgcttttat gaaagactct ccaatttttg tgcgttgtta tgataaggat
     3601 tttgatgata atggagtgat gaatgattgt gaaatgagtt ttgagctagg gcttataggc
     3661 atgagtaaaa tcgctgaaac tagccagata gctaaaatga aagaattggc taaattttat
     3721 aaaaataaag ttatttttga tcttttaagt ttgaaagatt ctttagtatt attagatgaa
     3781 aaggatttaa aacttgtaag cattcatcat cttatcaaag atgatagtgc ttgtgaagat
     3841 tttaatacgg ctgcgaaact tatgccacct ttaagaagca aagaagatgt tttggcttta
     3901 agagaggctt taaaagaagg aaagattagc tttttaactt ccctgcatag tgcaaaatca
     3961 atttctttaa aagatttagc ttttgatgaa gcggcttttg gaattcatag cgtatgcgaa
     4021 tttataagtc tttgttatac ttttttaatc aaagaaggat ttttaaattg gcaagagctt
     4081 tgtcgattta caagtaaaaa tcctagtgaa tttttaggtt taaatagtgg agttatagaa
     4141 gttggcaaag aagctaatct agttcttttt gatgagaatg aagaaatttt tgctccaaaa
     4201 agttctcttt attctgagga taaacttttt ggaaagatta aaatgcatat aattaaagga
     4261 aaaaatattt tagaaactta aattcccaaa gatagtttaa atcctaaaaa tacaagtgct
     4321 gccataatac cagcggctgg taaagtgata atccaagcca atcctatagg cttcatcata
     4381 atccaatttg cgtttttatt atacactcct atacccaata tagcacctat gagtatatgg
     4441 gtggagctaa caggaattcc aaattgtgta gctaagagta taactatgct tgcaccaagt
     4501 tctgcagaaa atccagtagt agagcgtatg gttgcaagtt ttgaacccac tgtagtaatc
     4561 acttctttac ctaaaaacca aagccctaca actagagcaa ctccaaacat agctaaagca
     4621 gcaaaaggta caggagaagt cgcgttaatt gtgccgtttt ttaagacatc taaaatcgct
     4681 gcaaaaggac ctatagcatt ggctatatca ttggctccgt gtgaaaatgc aaaactagag
     4741 gctgtaaata tttgaaacca tgagaaaatt ctatcagtag ttttattaag ttctgttttt
     4801 ttaacgattt tgactatagc aaatgttaca acataactta tagttcctat aattccgata
     4861 atccaaaagt tttgtaaaat atctaaagtg ctaacattat ttaaaccttt aaataaaaac
     4921 attgccgaaa tgatagcagc agcaatacaa gcaatgattg gcatatgagt ttttaaaata
     4981 gagtaaatat ctatatcttt ttcttgatcc ttaaattcct tcattttatt tctatagaaa
     5041 ttattttctt gttcttcctc atctaaagct atagcggaaa gttctttgat ttgttcttct
     5101 tgggattttg tttttaaatt taaaaagtat tcttctttga atttttttct ttcttttttg
     5161 atatttttca aatcatcatt tagtttttct gatggtttta aaattttctt atcaatatat
     5221 gaataaataa tataagctac aataccccct aaaagaggag aagctatcca agaaatagct
     5281 attcttaaaa tttcactcca tttaaccata gagagtgttt ggatcccatc aaattttaaa
     5341 agccccatca taatgctagc acctacaatt ccaccaacta tactgtgtgt ggttgataca
     5401 ggtaagcctt tcttggttgc aataaaaatc caaaccccag agcttaaaag tgcagcaagc
     5461 ataatgataa caaaaagcat aggatctaaa gaatttggaa aaataacaat accgctgcgt
     5521 atggttttag taacttctgc gcctgcgaag attgccccgc ttagctcaaa aacagctgct
     5581 ataattaaag cttgtttaat ggttactgtt tttgcgccaa cgcttgttcc aaaagaattg
     5641 gctacatcat ttccacctat attaaatgcc ataaaaatgc caaatataga agcaagaata
     5701 aaaagaatca attgatgttg cgaaatataa ccaaatcccc aaataacaaa tgcgatagta
     5761 ctgataataa aaataacaaa agctatgagg ttgtcttttt gcattaataa ccctttttta
     5821 ttttaattat acacttattt actttaaatt tgctaatttt attttttagt ctttgtggaa
     5881 tttttattta tattattttt ttataataaa tactcaaaca agaaataata aggaatataa
     5941 gaataatgag gggtattttt tatataatag cattgttttc tttactcaat gccgatgaac
     6001 ttacagaggc tttagcaaaa aataataatc aaaattcttg ggagcacttt gattatgaaa
     6061 ataccaaaga agctccaaaa attcaagaag agaatgtgga ttttaaaagc acttttgata
     6121 gcttactttc aaaaacttta gaaaataata atggtataga taaaacagat gggaatttgg
     6181 attttcaaaa cgaaaacgcg caggttaaaa atttaagttc tctttatgag ggggagaata
     6241 attctttgct ttttcaaaaa gaactttttg tggctcaaga taattataat tactcatggg
     6301 gtttaatcaa tcgttatgaa aaagatgatt ttttatttgg agttaatggt tttattgata
     6361 aacaaaaaga acaaaaagat actaaaagct ttggtacaga gtttggttat agtaaattta
     6421 taaaggctta tagtaattat tatataccca atgaagcaga aaaaaattta cagcttggaa
     6481 tgagttttgt aattccaact tataccgctt ttgcttttga tataagtaag gataatgata
     6541 aaactaatta tcaagtatct tactctcctt atagtgtatt tagtttaaat ttattgcgtc
     6601 gtgattatag tgcaagagag actgttgatg atactgttgt tcaagttgga tttagtttta
     6661 atttcaatga aagtttttta aagcaattta gaaaaaaaga taatacttta gaggaggtta
     6721 atcgatatga tttcctccaa agaacccatt agttcattcc agcattatgg aatttttctg
     6781 gattatccat agcatagcgg aatttttccc aatcaatttg tttatcccag atggcaacaa
     6841 ttaaggctgc tactgaattt ccacaaagat ttccaaccgc tctcatttca gacataaatt
     6901 tgtcaacacc taaaagaata cctatagcag ttactggtag aacttgtgct aaggttgcat
     6961 ttgcttctga aatttccata tttcctagag ccgcaagcgt acttccaagc actataaaac
     7021 ctgatccagt tacacctact gcaccttttg aggctatcat taatactatt aaaatactga
     7081 tttcgtgtgc taaacttaaa tttacattga aagcttgtgc tagaaagatt aagctcatag
     7141 ctagataaat atttgtacaa tcaagattaa aactatatcc cgttggtaaa acaagtccga
     7201 ctgttgcttt agaaagtcct gctttttcta gttttctcat taaaggagca agtgcagact
     7261 cgcttgaact ggttgcaaaa acgatcaata cttctcttga gataaatctc ataaatttga
     7321 agatatttac ttttgcaaaa taacaaatca gacctaagat tccaaatata aaaacaagac
     7381 atgaaatcag cattactaaa agtaaatatg ctaagttgat caaagagcca attccgtatt
     7441 gagctatgag tacagccatt gctgaaaagg cggcaatagg actaaaatac ataatgattt
     7501 gtagaatttt aaaaacaaaa ttttgtgcca cttcaaaaac tctttgaatt gcctgtttat
     7561 cttctattct cattaaagaa ataatcaaag cagtaattat agcaataact aaaacttgta
     7621 tggtttttcc ttctgtaaaa ggcgtgataa tatcagtagg catagcatct tttaaaatat
     7681 gcataatctc agagctcgca cttacttctg tggtttgaga aatgtatttt tgaacgcttt
     7741 ttgtatcaag ttgacttgga tcaagattca ttccatggcc tggttgcata acatttgcca
     7801 taaaaatacc tatagcaagt gctaaagtac ttacaacttc aaagtaaata accgctttag
     7861 caccaatgct acctactttt tttaaacttt caagactaat gatgcctaaa accaaagtaa
     7921 caaaaataat aggacctata agaaccttta aagcacctat aaaataatca actcctggtt
     7981 tgctagcaat ggctaattct ttatctatat agccaagtac aatacctgca ataatgccta
     8041 taatcaccca aaatccaaga cttttgataa tacgtttata taaaggcggt tttctttcag
     8101 ctaaagtttg acttaaagtt tccaagttta ttcactcctt ttgatctttg taaaatataa
     8161 ttttaacaat gcgtattgta aattttaaca aaaaaacaaa tctagaaata ctttctttta
     8221 tatgatatga taatttttta tataaatgtt acaaaatttc tcattatttg cattataaaa
     8281 tttaaaatat ttttgaaaat tttataattt tgcaattcag tttgcttttt gttatttatt
     8341 attggtaata attctatttt tgatttattt gttttattgg gatgttttaa attatgaaag
     8401 aaatagtttt gtctgaaaat gctttaatta cttctaaaac agatcttaag gggaatatca
     8461 tttatgccaa taatgacttt ttaaaatacg caggttataa agttgatgaa cttttgtata
     8521 aatctcataa tatagtaaga catgaagata tgccacgcac tgtatttaaa tgtctttggg
     8581 attatattca aaaaggagat gaaatttttg catttgtgaa aaataaagcc aaagatggta
     8641 atttttactg ggtttttgca aatgtaagtg cttcatttga tactaatgga aatatcatca
     8701 attattattc tgttcgtcgt gcacccaata gaaaatctct ttcta
//
LOCUS       DAEBKH010000065         8666 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.065, whole genome shotgun sequence.
ACCESSION   DAEBKH010000065 DAEBKH010000000
VERSION     DAEBKH010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8666
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.065"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..232)
                     /locus_tag="KIL20_001021"
     CDS             complement(<1..232)
                     /locus_tag="KIL20_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HBD2721056.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQSAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEI"
     gene            complement(358..1482)
                     /locus_tag="KIL20_001022"
     CDS             complement(358..1482)
                     /locus_tag="KIL20_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HBD2721057.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFSVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGITANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKVALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(1479..2729)
                     /locus_tag="KIL20_001023"
     CDS             complement(1479..2729)
                     /locus_tag="KIL20_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HBD2721058.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFITGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            complement(2731..3234)
                     /gene="petA"
                     /locus_tag="KIL20_001024"
     CDS             complement(2731..3234)
                     /gene="petA"
                     /locus_tag="KIL20_001024"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HBD2721059.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            complement(3324..4610)
                     /locus_tag="KIL20_001025"
     CDS             complement(3324..4610)
                     /locus_tag="KIL20_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HBD2721060.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     AYFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILHFSREKNQEKIYISTKKLM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVMVFVLYVRVLPKRLEF
                     KLVKKEQISSKLFFLCIVFLFLFVISFFIGEIFDIKISFFALLWAGIFWLIVLKIQGK
                     KSIKILFEAPYGVLLFSFGLYMVVFALHKIGVSEILVKSYTFLMQDKSGIFGVALISA
                     FGSSVFNNLPMVLIGDLALKEYFENFSFDSLMIYAHLLGVNIGPKLTPIGSLATLLWL
                     GVLARKGINISFWQYCKFGFLITLPVLVFSLFALIV"
     gene            complement(4611..6470)
                     /gene="mnmG"
                     /locus_tag="KIL20_001026"
     CDS             complement(4611..6470)
                     /gene="mnmG"
                     /locus_tag="KIL20_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HBD2721061.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     ARNKLLKLPNLEISQEQASVLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSKNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQIQMLRSVKGFEDAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPMFETMDNYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            complement(6556..7053)
                     /gene="cetB"
                     /locus_tag="KIL20_001027"
     CDS             complement(6556..7053)
                     /gene="cetB"
                     /locus_tag="KIL20_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HBD2721062.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDINNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRVEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            complement(7071..8450)
                     /gene="cetA"
                     /locus_tag="KIL20_001028"
     CDS             complement(7071..8450)
                     /gene="cetA"
                     /locus_tag="KIL20_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HBD2721063.1"
                     /translation="MVKNGLLLTIFLSIIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
     gene            complement(8570..>8666)
                     /locus_tag="KIL20_001029"
     CDS             complement(8570..>8666)
                     /locus_tag="KIL20_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HBD2721064.1"
                     /translation="GINAGVSALMDIVSSYKMTYNELIFNLQENN"
BASE COUNT         3115 a         1622 c         1061 g         2868 t
ORIGIN      
        1 ctatttcatc ataatcacct tctatttcta gtttagactc catataatgt tttgcaaaaa
       61 ctaaactcgt atcactaaat aattttaaaa aaggtatttt ttctttgaaa attaaagaaa
      121 atttagcaga ctgattaccc acatgaaatt cttcttgatc ccaaaataca attctaaaat
      181 ttccataatt ccattttgaa agaataaatt taatcatttg tttttcaagc atgacatact
      241 ccaattaata ataattatta ttagatagta tctcttaatt aggtttaaaa attaataaaa
      301 atgaagaaaa aataagattt ttgccattat cactaaataa tggcaaaaaa tgtaatatta
      361 atgtaattta gaccaaacag aacgcttcca acctatagca aaaatactta aaattacaaa
      421 gaatatcatt acataaattc ctgtagtttt tctttcttct ttcttgctat cacccacttg
      481 atcaatataa gatacaacct tagcctgtgc agcttctgtt aaacctactc ttggcatagc
      541 ggttcctgga agaagttttt gagtgttatt aataaaatca tgtaaatatt gctcaccacg
      601 agatcttatc atcatagaaa gatcaggcgg aacagaacct aaataagttt ttaaatcatt
      661 ttgatttgat ggagtaaaaa agctatcgta tttcatatca tgacaacgtc cgcaagcctc
      721 aataaaagtt gctttatctt tagcaaattt tatatctttt tccattaaag ccactttttg
      781 agcactattt tccattttag catattttgc ctcaacatct ttcttaatag tagcatcttc
      841 attggcttca aatttaacac tcacatcttt aagataagca attacattgg ctatatttgc
      901 atttgtagct tcttcacttt ctcctgaagt atctttattg taagctgtca taataaaagc
      961 atcaccaaat ttatgatcta cttttaaagc aagcgcagga tgcataatca aagcagctaa
     1021 aaatttttca tcaaaaatag caccagctgc actaagatca ggtggtatta ctcccataga
     1081 agaatcagta atattagctg ttattccatc ttcttttaca ccatgacatg caaaacagtt
     1141 attttcaaaa aattctttac ctttttttgc atcaccctta gcaaaatcga tctttgcaac
     1201 atctgcccaa agtgtttcaa ctttgcttaa ttcttctttt gctttttcaa gttctttgtt
     1261 tgcactctct attcttttag catctcctga agcttgtgca tcttttagag ctaattcttt
     1321 agcttcaact ataccttttg caaaagtagt atcttcaaca gaaaaatcaa aatttgcagg
     1381 agcaacatga ggtttcatca ctgaatgagc ataaggctct accccccaat atacaagcgc
     1441 agtaaaaact accacaacta aaaatatttt tatttctctc attgtttagc tccttttctc
     1501 tccataatag taataaccgg taaaactaca ataagtaaaa gtaaaaatac tatagaagca
     1561 taaaatccta cccaagcatt tacacctgtt ggaggtaatt ttccataaac tgttaaaaca
     1621 attaaatcga taagcaatat ccaaaaccaa atgaaaaata aaggtctttc atgagccggt
     1681 tttacaacat cacttctatc aagccaagga agcaagaaga aaatcacttg agcaatacca
     1741 aatgcagcca aacctatatc aaaagcttta atacctgcaa tatcaaagaa aaatcctctt
     1801 aaaacttcat aactccataa gaaataccac tcaggataaa tatgagctgg tgttttaagc
     1861 gcattagccg gatcaaaatt aattggatcc attgcaaatt caaatttaaa acagaccaaa
     1921 taaaagaaga aaatcataaa aaagcttata tacataaaat cttttgataa aaatcctggc
     1981 caaaaaggaa tcactttaga accctttgtg tcacctgcca tgtatttttc agcctctaaa
     2041 tcaaagtcaa gttcttcaga aatttcatta ttaacatgag gaattcttaa agaatagaag
     2101 tgaaatgcta taatagcaat gataactata ggaagcaagc acacatgaag cataaaaaat
     2161 cttgttaaag ttggatcaga aaccgcataa tctccacgaa tccaaatcac aagctcaggg
     2221 ccaataaatg gtatccctcc aaaaagatta gtgattactt gagctgccca ataactcatt
     2281 tgtccccaag gaagcatata cccactaaaa gcttcagcag aaaatacaac aaacaaaagc
     2341 ataccgctaa cccaaatcat ctcacgacct tttttataag aaccgtaata aattcctgtt
     2401 agcatatgta tgtatataat caaaaataca acagaagcgg caacaccatg catgtgacgc
     2461 caaagccatc cataatccac ctcttgcata atagtcttat tcacactatc aaaagcaagc
     2521 gcagtatctg gtttataata catcacaagt aaaagtcctg taataaaaag cactgcaaat
     2581 agagtggtta aaataacccc cattgcccaa agaaagttaa tttgctttgg tatccaatac
     2641 tttaccatta aaacatcaag cagtttatgt actgcaagtc tttgatcaag ccaatctaca
     2701 aggccattag cttttctaat ttgtgccatc ttaagcctcc gctatcattt ttttatattc
     2761 aggaccctct tcacctaaaa caagtttggt tccatcaatc ttaaaaggag gaatttcaag
     2821 aggctttgga ggaggtccaa agacattttt tccacttgtg tcaaattctc caccatgaca
     2881 ggcacattta aacaattgct cacttggttg gtaagcaggt atacaaccca aatgcgtaca
     2941 aagtcctata accacagtat aagctgcgtt atctaccaca acatcacgtt tttcatcttt
     3001 tggcatactc gcatcttttt ttaatataaa aataggcttt ttacgccatt ctatagttct
     3061 aagctctcca tcttgcattc ctgataaatc tactgtagta aaacctgcag ctttgacact
     3121 tggaagcgga tcccaagttt ttttcatcgc aacaagcgag aaaacaccgc ctacagcagc
     3181 tacgcttcca aatgcaaagc ccataaagct tcgtctactc tcagatgtag ccataacttg
     3241 tcctttcgat tttatttttt aaccaagtta aaagtttatc gaaattaaaa taaatttttt
     3301 ctttgtttaa caagttttga tatttagaca ataagagcaa aaagagaaaa aacaagcaca
     3361 ggtaaagtta tcaaaaagcc aaatttacaa tattgccaaa aagaaatatt aatgcctttt
     3421 ctagccaaaa ctccaagcca aagcaaagtt gccaaagaac ctattggggt aagttttggg
     3481 cctatattta ctcctaaaag atgcgcataa atcatcaaag aatcaaaaga aaaattctca
     3541 aaatattctt ttaatgccaa atctccgatt aaaaccatag gcaaattatt aaacacagaa
     3601 gatccaaaag ccgaaatcaa agccactcca aaaattccac tcttatcttg catcaaaaaa
     3661 gtataacttt taaccaaaat ttcactcaca cctattttat gtaaagcaaa aactaccata
     3721 taaagcccaa aactaaaaag caaaactcca taaggtgctt caaaaagaat tttaatactt
     3781 tttttacctt gaatttttaa aacaataagc caaaaaattc ccgcccaaag caaagcaaaa
     3841 aaacttattt taatatcaaa aatttcacct ataaaaaaac tgatcacaaa aagaaataaa
     3901 aatactatgc aaagaaaaaa caacttcgat gaaatttgct cttttttgac taatttaaat
     3961 tcaagccttt taggcaaaac tctcacataa agcacaaaaa ccataactat agtagaaagt
     4021 aaaacaaaaa aattgggcaa aaacatattt ttagcaaatt ctaaaaattc tatcttaaaa
     4081 taatttgctg taatgatatt ggttaaattt gaaataacca aagcatttga acttgcatca
     4141 cataaaaaag aaagactaag taaaaaagaa cttaaaataa aagcatgatt tttacaatct
     4201 ttaagagttg aaaataaagc tataataata ggtgtaatga ttaaaatcgc tccatcgtta
     4261 gcaaaaaatg cagaaagaaa aaagacaaaa atcaacaaaa ataacatcaa tttttttgtg
     4321 ctgatataaa ttttttcttg atttttctct ctagaaaaat gcaaaatttt actcgcaata
     4381 aaatcaaaaa atcccaaagc ttccaagcta aaagaaagaa taatcaaccc aactaaagtt
     4441 aaagaactat cccaaaccaa agaaaaaaca aaataagcgt ctttaaaatc taccaattga
     4501 aaaataaaaa caaaaaaagc ccccaaacta gaaaataccc aaataggtaa attccatgga
     4561 cgccaaaaaa gtaaaactaa agtagataaa aaaataaaaa aagcaagcat ttaagctttt
     4621 ttcttttgca ttttgatata aatttgtaaa atatctaacg ctgcaggagt aattccactg
     4681 atttgacttg cagcaaaaat ggttggaggt ttatgatgat taagcttttc tacaacctca
     4741 ttactcaaac cacttacact tttaaaatca aaattttcag gaattttaag ctcactaaga
     4801 tttttcattt tttctacttg agctttttgc atgctgatat aatgataata ctttgcctcg
     4861 tttaaaattt ctcttaaaga ataattatcc atagtttcaa acataggatc aagttttttt
     4921 aatttttcta tatcaaaact tgctcttgca acaatttttt gaagattgac tatagaagaa
     4981 attttatctt ctcctaaact ctctaaaaaa gcattatttt ggttattagg cgtaaattct
     5041 ttagaaagta aaaattcaag tcctttttga agattgtttg caatattttg tatataagta
     5101 aaatcttgct cgcttaaaag ccccaaatca tagccatatt ttccaagtct aagtatagca
     5161 ttttcttccc ttaaaagcag tctaaattct gctcttgaag taaacattct ataaggttct
     5221 tttgtacctt ttactaccaa atcatcgatt aaaactccta tataagcttc atcacgcctt
     5281 aaaatcaaag gctctttcat atctatactt aaacttgcat tgattcctgc cataaagcct
     5341 tgtgctgcag cctcttcata acctgtagtt ccattaatct gtcctgcaca ataaagattt
     5401 ttaatctttt taagttctaa agtatgctta agttcagttg gctctatata atcatattct
     5461 atagcataac caaaacgggt tattttagca tcttcaaaac cctttacaga acgcagcatt
     5521 tgaatttgta cctcataagg caaagaagta gaaaaaccgt tgatataata ctctgtcgca
     5581 tcgatagttt gaggttctat aaaaagatga tgactttctt tgtcgctaaa acggttgatt
     5641 ttatcttcta tagaaggaca ataccttggc cctacacctt caatctgtcc tgtaaaaagt
     5701 ggagcacgat aaaaattatt cttaataatc tcatgtgtag ttgtattagt gcgtgcgata
     5761 taacaaggaa gttgagtagg attgaaattt tttgaacgaa aactaaaagc tttaggattt
     5821 acatcaccat cttgaatttc aagcacgcta aaatcaatgc tttttgcatc cactcttggg
     5881 caagttcctg tttttaaacg ccccattttc aaacccaaag tttgtagata atttcctaaa
     5941 tttaccgaag caagctcccc tacccttcct gcttgaagtt tattttcacc tacatgaata
     6001 agtccattta aaaaagttcc tgttgttagg atcacttttt tggcaaaata tgtattttct
     6061 aaatttgttt ttacgccttt aacttcatca ttttctacga ttaaaacact cgcttgttct
     6121 tgagagattt ctaaatttgg aagttttaaa agtttattac gtgcaatgat acggtattta
     6181 tccatatcaa tttgtgccct acttccttga acggctacac ccttactctc atttaaaatg
     6241 cgaaattgta tccctgcttc atcggtgatt tcgcccataa gaccacccat ggcatcaagt
     6301 tcttttacca aatgcccttt agcaagccct cctatagccg gattacaact tgccgctcct
     6361 atttgctcaa tcaatgtagt taaaagtaaa gtttttttac ccattctagc agcagcagca
     6421 cttgcttcaa cacctgcatg tccaccacct ataacaatga catcaaacat attttgcctt
     6481 gaaaaatgtg aattttaaag aaagattata taatatttag acttaaaaca aactcgtttt
     6541 aagtctaaca aaaatttatt tagcttcttg aagagagaag attagctcat tataagtttt
     6601 atctgcatct ttacagaaat ttttaagcat ctcaacaccc ttatttaaac cttgttgctg
     6661 ttctactctt aaaagatcac tataaaggct ttctattgta gaaatagcgc ttttatttgg
     6721 catacgacga acggaataat agcctatgat attattatta atgtctattg atggagttac
     6781 atttgcaaaa acccagtagt aattgttatc tttggttttg ttttttacgt aagcaaaaat
     6841 ttctttgcct tctttcatat aatcccataa atatttaaaa acagtttttg gcatttcttc
     6901 atgtcttact atgttatgag gtttatttaa aacttcaccc atagtataac ctgcatactt
     6961 taaaaaatca tcatttgcat aaactatttt accttttaaa tccgttttag aagtaattaa
     7021 actatcttct tgtaaaaaaa tttctcttga cattttccca ccctcttaat ttatattttt
     7081 aattttgcta agatttcagc acttctttgc tctagtgatt taatatcatt tacaatcgca
     7141 tcataagctt tttgatcgat ataatcttga cttgattctt ctattgcttt tttagcgtta
     7201 tcttttataa attctttagc taaatttaac tcagtttcag aactaagctc attaataaca
     7261 ccttgagctc tctcatcttg acaaagatta gaaattggat ctacactttc aagattgaaa
     7321 ttttgagccc catttaaatt taaatatata tttgatttat aaagaatatg atcgatttta
     7381 accacagaca aaatcaatct ctttgcaaag gatccaaaat taacaccaag agcactacta
     7441 ttttcttcta gacgtttaaa agcttgagaa aatttattaa ttctttcttc agattcacta
     7501 acaatgttaa aaacttgctc actgccactt tggatattta caaaatcttg ttgcatagtc
     7561 tgaattgcaa tagaaatttc gcttgtagat ctttgagttc tttctgctaa ctttctaact
     7621 tcatcagcca caaccgcaaa gcccctacca tgctctcctg cacgcgcagc ttcaatagca
     7681 gcatttaaag ctagaagatt ggtttgatcg gctatatcgc gtattacttc aaccactgaa
     7741 gtgatatttt gtgaattagc cacaaaagtt tgtactgtct ccttgctcga atttacaaca
     7801 tccattaaag aacccatagc actttgcaaa gaatccacct ctgaaccatt ttctgtagct
     7861 gtatgagaaa tggcatccac tgtatcatat acatttttca tcatgctaat atcttgattt
     7921 aatgagctag aaatttgaga catgtcttta ttttgatttc caaggcttaa atccattaaa
     7981 gttcttgata aagcattttt aaaagtagat cttgctgtca cttctatgtt tgctaaagct
     8041 ttatttataa attcgatatt atgagcaaaa attcctttta aaccttcagg caaagccttg
     8101 cgataaaatt cacctttttg agaacaagaa atagaagtat taatttccct taagtaagct
     8161 tctagcccat caatagtatt gttaagatta tctgctattt cggctaattt tttgcttttt
     8221 gtttttacat agataattct attgtcaaaa tttccttctt ttaactctct acaaagaacc
     8281 aaaagtttat ctatcattat ttgctcatct ttgtgttgtc taagcaaata aatcattaaa
     8341 acagcgatta aaacaaaaat tatcgctcca acaaaaatat gaataaaaat gacacctaaa
     8401 acaccgataa tacttagaaa aatagttaat aataatccat ttttcaccat aaatttaccc
     8461 cttttattga aaattttttg aaatcataaa tcaaaacaat actttaacaa tatattactt
     8521 taatttctag gtgaaaatta tacaataaaa aagattaaat atatcttatt taattatttt
     8581 cttgtaagtt aaaaataagt tcattataag tcattttata agaacttaca atatccatta
     8641 aagctgaaac tccagcatta atacct
//
LOCUS       DAEBKH010000066         8638 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.066, whole genome shotgun sequence.
ACCESSION   DAEBKH010000066 DAEBKH010000000
VERSION     DAEBKH010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8638
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.066"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..1748
                     /locus_tag="KIL20_001030"
     CDS             <1..1748
                     /locus_tag="KIL20_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HBD2721065.1"
                     /translation="GEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIIA
                     QTANDASLEFGLAKDFKTVDMIKDAIKENPDSKIYIKIHPDVLSGKKQSDLDINSLPK
                     ECILISENFNPIALLEFFDKVYTKTSGMGFEALIQECECVCYGMPFYAGWGLTKDKLE
                     CKRRMQKRSLEEVFYAAYILYSEYFNPYLNQKSNIFDTIQTLAKYKSIEKANSNRLFM
                     LGFTLWKRYFIKPFFKAKNNEIIFLNSIKSLARYKLKEDDKFFIWGKKYDENTLKNLL
                     LVKAKEQNLTSFTPKVSLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKVSKLEE
                     LLQNEIFDKNMLNRAKNIIKTLLENRFSKYNGLKHEDLKINAKIGQKVILIPAQVEDD
                     ASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIV
                     KDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTR
                     KLSLEELVAGALITYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTF
                     ILRKIRRFYEFLAKK"
     gene            1745..2929
                     /gene="kpsS"
                     /locus_tag="KIL20_001031"
     CDS             1745..2929
                     /gene="kpsS"
                     /locus_tag="KIL20_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HBD2721066.1"
                     /translation="MRFSTKIKKEFSGKNVLLLQGPVGNFFHLLAIKMKKKQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKE
                     LGVEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPILACNFKKYLLQTNQFNGNFYKNFFL
                     DK"
     gene            3001..4122
                     /locus_tag="KIL20_001032"
     CDS             3001..4122
                     /locus_tag="KIL20_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HBD2721067.1"
                     /translation="MNREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIEADLSKIE
                     KNEQFPFFKISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKIGTMQERIKLFANVIVEKLKQNESKQDYE
                     LILVAHSVGTIVCIEVLEYILRQHLDLSLLCKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSKFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            4119..5480
                     /locus_tag="KIL20_001033"
     CDS             4119..5480
                     /locus_tag="KIL20_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HBD2721068.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEGKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRTKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            5477..5896
                     /locus_tag="KIL20_001034"
     CDS             5477..5896
                     /locus_tag="KIL20_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721069.1"
                     /translation="MKRVRVKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK"
     gene            complement(5897..6244)
                     /locus_tag="KIL20_001035"
     CDS             complement(5897..6244)
                     /locus_tag="KIL20_001035"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HBD2721070.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAIV"
     gene            complement(6244..6780)
                     /gene="fliL"
                     /locus_tag="KIL20_001036"
     CDS             complement(6244..6780)
                     /gene="fliL"
                     /locus_tag="KIL20_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HBD2721071.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            6903..8273
                     /gene="pgmL"
                     /locus_tag="KIL20_001037"
     CDS             6903..8273
                     /gene="pgmL"
                     /locus_tag="KIL20_001037"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HBD2721072.1"
                     /translation="MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVS
                     VGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSH
                     NPKDYNGFKITINKESFFGEELKEFSKEVYKHLDDEIEENLEVEKYDILSLYVKFMCE
                     QFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEE
                     NLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKNIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIHVNEEEKFKLVEEFQKEIEKGAL
                     KGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEI
                     KARLKN"
     gene            8321..>8638
                     /locus_tag="KIL20_001038"
     CDS             8321..>8638
                     /locus_tag="KIL20_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HBD2721073.1"
                     /translation="MKKILVLLLLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEA"
BASE COUNT         3051 a         1093 c         1540 g         2954 t
ORIGIN      
        1 aaggtgaaga aatcaagcaa gctaaaaaag ctatagagct tatcaaaaaa tataaaatta
       61 gcaagtataa taacaatctt gatatcccag atgattattt tcaaaaagat gaaaaacgtg
      121 ttttaattat tgctcaaacg gccaatgatg cctctcttga atttgggctt gctaaagatt
      181 ttaaaactgt cgatatgata aaagatgcca taaaagaaaa tcctgattct aaaatttata
      241 taaaaatcca tcctgatgtt ttaagtggta aaaaacaaag tgatttagat ataaattcct
      301 tacctaaaga atgtatttta atcagtgaaa attttaatcc catagccttg cttgagtttt
      361 ttgataaggt ttatactaaa acttctggta tgggttttga agctttgata caagaatgcg
      421 agtgtgtttg ttatggcatg ccattttatg caggttgggg tctaacaaaa gataaattag
      481 agtgtaaaag aaggatgcaa aaaagaagtt tagaagaagt tttctatgct gcttatatac
      541 tttatagcga gtattttaat ccttatttaa atcaaaaaag taatattttt gatactattc
      601 aaactttagc aaaatataaa agcatagaaa aggcaaattc taatagactt tttatgctag
      661 gctttacctt atggaaaagg tattttatca agcctttttt taaggctaaa aataatgaaa
      721 ttattttttt aaattctatt aaatctttag ctagatacaa gcttaaagaa gatgataaat
      781 tctttatttg gggtaaaaaa tatgatgaaa atactcttaa aaatttgctt ttagtaaagg
      841 caaaagagca aaatttaact agttttaccc ctaaagtttc tttagtggaa gatggtttta
      901 tccgctcaat ttcactaggt tctgatctta cgcgcccttt ttctttaatc gttgatgata
      961 aaggacttta catagatcca aataaagtaa gcaaattaga agaacttttg caaaatgaaa
     1021 tttttgataa aaatatgcta aatagggcaa aaaatattat aaaaacctta cttgagaacc
     1081 gcttttcaaa atataatggt ttaaagcatg aagacttaaa aatcaatgcc aaaataggac
     1141 aaaaggttat tttaatcccc gctcaagttg aagatgatgc ttcgatgatt ttaggaggtt
     1201 ttggcttatc tactcttgat ttgcttaagg aggtacgttc taaaaatcaa gatgcttata
     1261 tcatctttaa accccatcct gatgtgttaa gcggcaaccg tgtaggttta aaagatgaaa
     1321 cactcatctt ggaattttgt gatgagattg taaaagattg cagtattgat agtgctataa
     1381 aaattgctga tgaaattcac actattactt ctacaagtgg ttttgatgct cttttaagag
     1441 ctaaaaaagt ttttacttat ggcatgcctt tttatgcggg ctggggttta acaaaagata
     1501 aatatagatg cgaaagaaga acaagaaaac taagcctaga agagcttgta gcaggtgctt
     1561 tgatcacata tccaagatat ataaatccta aaacaaaaac tttatgtgaa attgaagttt
     1621 gtttagatat aatgctaaat ttacaaaaag cttatttttc aaaaaaatat ataaaattgg
     1681 caatagattt taaaactttt atacttagaa aaataagaag attttatgaa tttttagcaa
     1741 agaaatgaga tttagcacta aaattaaaaa agaatttagc ggtaaaaatg ttttactctt
     1801 gcaaggacct gtgggaaatt tttttcacct tcttgcaata aaaatgaaaa aaaaacaaac
     1861 caaagttttt aaactcaatt ttaacggtgg agattttttt ttctatccta gtggaacgag
     1921 gtgtaagtgc gatgaaaaag atcttgaaaa tttctataga gatttttttc aaagcaaaaa
     1981 aatcgatgct attttaatgt ataatgattg tcgtattatc catgctaagg ctattaaagt
     2041 ggctaaagaa ttaggagttg aaatatggat ttttgaagaa ggatatttaa ggccttattg
     2101 tattactttg gaaaaagatg gggtgaatgc aaattcttct ttaccgcgtg ataaaaattt
     2161 ttatctttct caaaatattt ttaccaaaga aagcataaaa gaaattccag gtggatttaa
     2221 atttatggct tttgatgcct ttttgtattg gttgtttgct tttattttgg ccccattttt
     2281 taacaacaaa cttcatcatc gcactttata tccttttgaa tttttatttt ggtttagatc
     2341 tttatacaga aaatatcttt acaagattac agaaaaaaaa ctaaatgaaa agatttataa
     2401 tttagaaaaa aagtactttt tggcgatttt acaagtttat agcgatacgc aaattaaata
     2461 tcattacaaa aaaagcatag agcactttat agaggaaacc atactttctt ttgcaaacca
     2521 tgcaagagct aaatcttatc tagtttttaa acaccatccc atggataggg gttataagaa
     2581 ttattctaaa ctcataaatg atttaagtca aaaatatcat gtagaaggaa gggttttata
     2641 tgttcatgat acccacttgc cagttctttt aagaaaggct ttaggttgta ttactataaa
     2701 ttcaacagta ggccttagtg ctattttaga aggctgtccg actaaggttt gtggcaatgc
     2761 tttttatgat tttgaaggct tatcttatcc aaagaagctt caattttttt ggcgtgaagc
     2821 tcatgcttat aaacccaatc ctattttggc atgtaatttt aagaaatacc ttttacaaac
     2881 taatcaattc aacggcaatt tttacaaaaa tttcttttta gacaaataag actaaaaagc
     2941 tttgattaag agagctttta aagcaaagtt gttataatta aaagtaaaaa gaaatattgt
     3001 atgaataggg aagtatttta tatagcagga tatgatccta aaagttatag attttattat
     3061 gatttattta aaaaaaacct aaaagattat tctcatgctt ttaacattga agctgattta
     3121 agtaaaattg aaaaaaatga gcaatttcct ttttttaaaa tttcttgcga gggagtgcaa
     3181 actaaatatc attttttaac atggaatgat attgttaaga aaaattggtc agaaaattat
     3241 aaagatgcct tagcagattg ttatagtttt tttagaattt atactatcac agggcttttt
     3301 atcaaatttg gcaaagagtc gatttatcaa cttatcacag gttattatcc ttttttttat
     3361 gtgttatttt ctttactatt ttctttggtt ttagcttttg gaagttttgc ttttttgcaa
     3421 aattatatgc atttttcttt agctatcatc ataggatgtt ttttaggatt tttactaaat
     3481 cattttttat ttaaattggg taagaaatta gctgtatttt ggatagcaag aatttgtgct
     3541 ttttgtgcta cttggcaaga taaaaaaata ggtactatgc aagaaagaat caaacttttt
     3601 gcaaatgtta tagtggagaa gctaaaacaa aacgaaagca aacaagatta tgagcttatt
     3661 ttagtagcgc atagtgttgg aactatagtt tgtatagaag ttttggagta tattttaaga
     3721 caacatttag atttatcttt gctttgtaaa ttaaaaattc ttactttagg agaatgcata
     3781 cctttagtga gttatcaaaa aaaagcagat gaatttagaa agaagcttga atttgtttca
     3841 aagtttgatt taaaatggta tgattacaca tcgattattg atggagcatg ttttcctcaa
     3901 gtggattttt tccgcacgag tggtgtaaat gctaaattta cacccccatt tttaagtgct
     3961 aaatttcaca ctttatatga aaaacatgag tataaaaaaa taaaaagaga taaaaacaaa
     4021 gcgcactttt tatatcttta tagtattagt gttaaaggtg attatgattt tttttctttc
     4081 atcataatgc ctaaattttt agaagaaaag gtaaaaatat gagtgaatgt cccttttttc
     4141 caaaacctta taaaaacaag gcttctacac ttttaacttt tttgctaaag cgtagatctt
     4201 ggcttgatgg cctttatgag cgtagttata aaatgcaaac aggctatgtg aagatgccaa
     4261 attttgatct ttatgttata aatgacacta aagaagttaa aagaatgatg gttgatgagg
     4321 ttagagaatt tcctaaaagt gcatttttgc atgagctttt aagtccgctt ttaggagaga
     4381 gcatttttac tacaaatggt gaagtttgga aaaaacaaag agaacttttg cgtccaagtt
     4441 ttgaaatgac tcgtatcaat aaagtgttta atcttatgag tgaagctgtg gcagatatga
     4501 tggatcgttt tagcaagtat ccaaatcatg ctgttatcga agtagatgaa gctatgactt
     4561 ttattaccgc tgatgtgatt tttcgcacca ttatgtcttc aaaactcgat gagggaaaag
     4621 gtaaaaaaat cttaaacgcc tttgtgactt ttcaagagca aagcgtgcat acagccatgc
     4681 gtcgtatgtt tcgttttcca aaatggcttt cttatgtatt aggagatcgt aagcgtacta
     4741 aggccggaga tgtgattagg caggttttaa gtgacatcat aaaaccaaga tatgatatgg
     4801 cagataatgc agaatttgaa gatattttag gatctttgct tttagtagtg gatgcggata
     4861 cgaataagcg tttttctttt gaggaaattt tagatcaagt ggctatgctt tttttagcag
     4921 gacatgaaac cacagcaagt tctttgactt ggacgcttta tttgcttagt ctttatccta
     4981 aggagcaaga aaaagcttat gaggagatta ctcaggtttt acagggtgga gctattgaaa
     5041 tttcgcatct aagacagttt aaatacttaa caaatatttt taaagaatct ttaaggcttt
     5101 atcctcctgt tggatttttt gcaagagagg caaaaaaaga tacccaagtt agagataagc
     5161 ttataaaaaa aggttctggg gtggtgattg ctccttggtt gatacacaga catgaagaat
     5221 tttggacaaa tccgcatgga tttaatcctt ctcgttttga aggagaatac aaaaaagatg
     5281 cttatttgcc ttttggggta ggggagagaa tttgtatagg acaaggtttt gctatgcaag
     5341 aagcgatttt gattttggct aatattttaa aaacttacaa actagaactt gaagaaggtt
     5401 ttgtacctga tgtagtaggg cgtttaacag tgcgttcggc taatggtatg aggataaaat
     5461 ttagcaaaag aaagctatga aaagagttag agttaaaatt cgcgccaatt ttcgtcgtcg
     5521 tgtaaaacgc accttaaaag gaagcttaaa agaaaaatta gcagggacta tcctgctttg
     5581 tgcgatagta cctttagcag ttttaggata tctttttatc gtgattatag gaactttttt
     5641 taataccgcg cgagcaagac agggtgttag agctttagat cattttgtaa atgcaagctt
     5701 gtttaatggc tatgcttggg agagcgtttc ttctcatgcg tggcgtgaaa gaaatcgcaa
     5761 aaaatgggca aggattgtta taaaaatcac agattttttt caaaaagatc attgtaaaag
     5821 agcaaataaa agagaacaac ctgtggtgga tttcatactt tcaagaaatt tagacaagca
     5881 aactatagga aaataatcaa actatagcca ctatggctat agcaaaacca ttatcatgag
     5941 aaatgcttag ggaagtttga gtgatattaa aatcttttgt aattttttga gaatatttta
     6001 atttaggcgc gtttttttca tcttttgata tttcaatatc aaaaaaactg cataattcac
     6061 aaattccaac acccaaagcc ttgctagcgg cttctttagc agcccaaaga cctgctagag
     6121 ttgctggatt tttaatgagt atttgttctt ttgggcttag aaatttatcc aaaaaatttt
     6181 tgccatgtct agaatgaatt ttttctatcc tagaaatggc gatgatatca cagcctacac
     6241 gcattaagaa actacaaaat ccgtaaaata aacattttta ataaagccat cggttaaaat
     6301 ttcattgatt tttccaacta gctcatcttt taaacgttct ttgccttttt gtgtacttac
     6361 ttcttcaaaa gttttagctg ttaatgtacg aataataata tcacgaatca ctgggacttt
     6421 tttatcaagt tcaggtttta aaagttcgct attttgttct aattctatag tgcattttac
     6481 atatcttgag ccactatcgc taagtaaatt tagggtaaaa ggatcaagtg gatacatagg
     6541 acctatatta gcaaaatcac tacctcgttg agtaggggct gaaaccttag gtttatcggc
     6601 ttttgcctct tcttttggag cttctttgac ttcactttca tcacttgaac tgcttgaaat
     6661 aagccaagca atcactccca taatactaag aagtaaaaca aaaagtaaaa taacaataat
     6721 aattacaagt gaaccgcctt ttttcttttt cgtttcttcg ttttctaatt cttcatccat
     6781 aaattttcct tcatttagtg aaattaatgt aaaattgtag caaaaatttc ttttctatcc
     6841 aaatttgctt tagaaaaacg ataaatttag gtcaaagaag agatgaattt gaaggaaaaa
     6901 aaatgttaga tgtgattttt agagaatatg atataagagg actttatggc aaagaactga
     6961 atgaaaaaag tgttaaggct ataggttttt gcttgggaca aaccatgcta aataaaggct
     7021 gtaaaaatgt aagtgtgggc tatgatgcaa gatatagtgc aaatgaactt tttaattatc
     7081 tagtgagtgg acttaacaaa gcgggaataa aaatctatga tatagggctt gtaccaactc
     7141 cattgggata ttttagtctt tatgagggct tgaaatttga tgcaaatgtt atgataacag
     7201 gctctcataa cccaaaagat tataatggtt ttaaaatcac tatcaataaa gaaagttttt
     7261 ttggcgagga attaaaagag ttttcaaaag aagtttataa gcatttggat gatgagattg
     7321 aagaaaattt agaagtagaa aaatacgata ttttaagcct ttatgtgaag tttatgtgcg
     7381 agcaatttag ctttttaaag gattttaatt ataaatttgg tgttgattgc acaaatggtg
     7441 cggctggagt ggtgataaag cctttaatca aggctttaaa tttaaaagct catgtaatgt
     7501 ttgcagagcc tgatggacag tttccaaacc acgctccaga tcctacagaa gaagaaaact
     7561 taagtgcgat tagagagttt ttaaatcaaa atcaagatta ttctttagct tttgcttttg
     7621 atggggatgc tgatagaatg gttgctttga gtaaaactca tgtattttgt ggagatgagc
     7681 tttgttattt gtttgctaaa aatattccta atccacgcat tttaggtgag gtaaaatgtt
     7741 ctaaaaatct ttttgatgaa gtggctaaat ttggaactat ttttatggga aaaacaggac
     7801 attctaatat caaaaaaatg atgaaagaaa aagatattga tttagctgct gaagtgagtg
     7861 ggcatatttt ctttaaacat agatattttg gttatgatga tggaatttac gcatttttaa
     7921 gagccttaga acttgtttat aaaggttttg atttagaaag tatgattaaa gctttaccaa
     7981 aactctatac tacacctgaa attaaaattc atgtaaatga agaagaaaaa tttaaacttg
     8041 tggaagaatt tcaaaaagag attgaaaaag gagctttaaa aggtgttaaa agtctttgtg
     8101 aaattgatgg agctaggata gattttggcg atggatgggc tttgcttcgc gcatctaaca
     8161 ccagccctta tcttatcaca cgctttgaag caacttcttt agaaagagca aaagagcttg
     8221 aaagtacggt atttagttta tttaatgaga taaaagctag gcttaagaat tgatgagata
     8281 atatttcgcg atttaaattt attttaaaaa ggaattaaaa atgaaaaaaa tacttgttct
     8341 acttttgtta tgtgcgtttg cttttggcgc aagtgaatgt gatagaaaaa tcgatcgtat
     8401 caataaagaa atcagttttt ctaaagcgca taatgataca gctagaacct taagcttaga
     8461 gcttgcttta aaacaagtac aaaatgattg tgctaaagat cctatgtttt atgataaaaa
     8521 gttagaagct aaaaaactta aagaacaaga agtagaaaaa atcgaaaaag aacttgatgc
     8581 tttaaaagaa caaaaagatt atatgagtaa ggctgagtat aaagctaaaa aagaagct
//
LOCUS       DAEBKH010000067         8638 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.067, whole genome shotgun sequence.
ACCESSION   DAEBKH010000067 DAEBKH010000000
VERSION     DAEBKH010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8638
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.067"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..509
                     /locus_tag="KIL20_001039"
     CDS             <1..509
                     /locus_tag="KIL20_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HBD2721074.1"
                     /translation="ACGNDKEKQQNDVNLSTEASINQSDDMNFKLNLIDGGSISVKKE
                     NAVLNFNDEDKATLFVFFTTWCTPCIAEIPHLNKLQEKYNNDFNIVGVLLEDKSNDEI
                     QKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKHSKLINQYLGLIPEEMLE
                     IDIQKAIL"
     gene            509..1375
                     /gene="ftsY"
                     /locus_tag="KIL20_001040"
     CDS             509..1375
                     /gene="ftsY"
                     /locus_tag="KIL20_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HBD2721075.1"
                     /translation="MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            1375..2715
                     /gene="radA"
                     /locus_tag="KIL20_001041"
     CDS             1375..2715
                     /gene="radA"
                     /locus_tag="KIL20_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HBD2721076.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIIDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            2784..3464
                     /locus_tag="KIL20_001042"
     CDS             2784..3464
                     /locus_tag="KIL20_001042"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HBD2721077.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHAP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLVFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            3461..3652
                     /locus_tag="KIL20_001043"
     CDS             3461..3652
                     /locus_tag="KIL20_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721078.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(3674..4522)
                     /gene="metF"
                     /locus_tag="KIL20_001044"
     CDS             complement(3674..4522)
                     /gene="metF"
                     /locus_tag="KIL20_001044"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HBD2721079.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEVASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLEKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALAGIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNALALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(4532..6796)
                     /gene="metE"
                     /locus_tag="KIL20_001045"
     CDS             complement(4532..6796)
                     /gene="metE"
                     /locus_tag="KIL20_001045"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HBD2721080.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALIQ
                     KYGFAKDKILFAGLINGKNIYANDYAKSLKLIKELQKYTQNIVLNTSCSLLHVPYSTE
                     FESKLDSSYLKLFAFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRTKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            complement(6808..7578)
                     /locus_tag="KIL20_001046"
     CDS             complement(6808..7578)
                     /locus_tag="KIL20_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HBD2721081.1"
                     /translation="MTLFTKAFCVATLFTSFAWANEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKHKKFNPEEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLDDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSDEVKKFIEEKYQGALIPTF"
     gene            complement(7589..8580)
                     /locus_tag="KIL20_001047"
                     /pseudo
     CDS             complement(7589..8580)
                     /locus_tag="KIL20_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
BASE COUNT         2737 a         1275 c         1498 g         3128 t
ORIGIN      
        1 ttgcttgtgg caatgataaa gaaaagcagc aaaatgatgt aaatttaagt accgaggcaa
       61 gtatcaatca aagtgatgat atgaatttta aacttaattt gattgatgga ggatcaattt
      121 cagttaaaaa agaaaatgcc gttttaaatt tcaacgatga agataaggca actttgtttg
      181 tattttttac tacttggtgt accccttgca ttgctgaaat ccctcatctt aataaattac
      241 aagaaaagta taataatgat tttaacatag ttggagtttt attagaagat aaatctaacg
      301 atgagattca aaaatttata gaacagcata aaatatctta taaagtcgct aatggtgaaa
      361 ataactatct tttagctaaa gctttaggcg gggtaaatgg aattcctact atgtttcttt
      421 acaacaagca ttctaaattg attaatcagt atttagggct tattcctgaa gaaatgctag
      481 aaatcgatat acaaaaggct atactttaat gtttaatttt tttaaaaaag gacttgcaaa
      541 aactcttgaa aatattgttg gagttaaagg agagaacaaa aaaataacca aagatttgct
      601 tgaagaaatt ttgcttgaag cagatgtaag ttatgaaata gttgaagaga taatttatta
      661 tttaccacct caaaatgaag taaaaaaaga agatttaaag cgtgttatgg gttcttattt
      721 tctttatgaa aaaaaagaaa ccaatcaaga aaaacctttt gtagagctta ttttaggagt
      781 aaatggagca ggaaaaacaa caagtattgc caagcttgct tatttataca aaaaccaaaa
      841 tcaaaaagtg attttagggg cgtgtgatac ttttagagca ggtgcgattg agcaattaaa
      901 actttgggcg caaaaagtgg atgtagatat agttttaact gcacaagggc atgatccttc
      961 agcggttgct tttgatacca tttctaaagc aaaagcaaag gattttgata gagttattat
     1021 cgatacagca gggcgtttgc aaaatcaaaa aaatttagct catgagcttg aaaaaattgt
     1081 aagaatttca aacaaagctt tagaaggcgc accccataga aaaattttag ttttagatgg
     1141 aacacaggga aatgctggaa ttttacaagc taaagctttt aatgagcttg taaaacttga
     1201 tggtgtgatt attacaaagc ttgatgggac agctaaaggg ggtgcacttt ttagtatagc
     1261 aagagagctt gagcttccta ttttttatgt aggcgtgggt gagcaaatga cggatttaca
     1321 agaatttaat gcaagtgctt acttagatac tttattagat cctatttttg aataatggca
     1381 aaaaataaag cactttttga atgtcaagct tgtggaaatc aacaaagcaa atggcttgga
     1441 aaatgtcctg attgtggagc ttgggatagt tttgtagaat taaaagctga gcaaattaaa
     1501 gttttaaaag agcttgcgca agttagtatg aaaacaagtg aggctgtttg tattgaagat
     1561 gtggagttag aacattttac aagatacagc acagatgata atgagcttga tttggtttta
     1621 ggcggagggc ttgttgaagg ttctttagtg cttataggcg gaagtccagg tgtgggaaaa
     1681 tctacacttt tgttaaaaat tgcttcaaat ttagctaaac agggtaaaaa agtgctttat
     1741 gtcagtggcg aagaaagtaa agctcagatt aaattaagag ctgatcgtct tgaggctaat
     1801 actccgaatt tatttttact tactgaactt tgccttgaaa atattttaga agaattgcac
     1861 aaaaaagatt atagcattct tatcattgat tctatacaaa ctttatattc aaataaaatt
     1921 acttcagcag caggaagcat cactcaagtg cgtgagatta cttttgaact tatgcgtgtg
     1981 agtaaggctt ataatatcag tacttttatc atagggcata ttactaaaga aggtgctata
     2041 gcagggccta gggttcttga gcatatggta gatgtggtgc tttattttga aggagatgcc
     2101 actaaagaaa tcagactttt aagaggcttt aaaaatcgtt ttggtggaac gaatgaagta
     2161 ggtatttttg agatgactgc taagggtttg atcagtgcaa aagatttggc aaatcgtttt
     2221 tttactcgtg gaaaggctat ttcaggaagt gctttaggtg ttgtgatgga aggatctcgt
     2281 gccttggttt tagaagttca agctttagtg tgcgaaagtt cttatccaaa acgcagcgct
     2341 acaggatatg aaaaaaatcg cttagatatg cttttggctt tgcttgaaag aaaacttgaa
     2401 attcctttag ggcattatga tgtatttgta aatattagcg gcggagtaaa agtaagtgaa
     2461 actgctgcgg atttggctgt ggttgctgcg attatttcaa gttttaaaaa tcgccctttg
     2521 agcaaagata gtatttttat aggggagctt agtttaaatg gagaaattag agaggttttt
     2581 agccttgata cgcgtttaaa agaagctaaa atgcaaaaat ttaaaaatgc cattgttcct
     2641 tctaagcctt tggaagatat agggcttaag tgttttgttg ctaaagaact ttcgcaagtt
     2701 ttagaatgga tgtaaatttt cattaaaata taagtaagat tttgctagaa ttccgagttt
     2761 agaataaaat ttttgaggaa accatgaaag atttattttt atttagctct ttgcttgatg
     2821 caagtcatac tttttcttat ttttttcaca taggtttggt agctttaatt gctgttatag
     2881 tggctatgat ggctactcgt tctatgcaac ttgttccacg cggtatgcaa aatttaggtg
     2941 aggctttttt agagggagtt ttatctatgg gtagagatac catgggaagt gaaaaaggtg
     3001 caagaaaata tcttcctttg gttgcaactt tggggattat agtgtttttt agtaatatta
     3061 taggtataat acctggtttt cacgctccaa ctgcaagttt aaatttgact ttgtccttgg
     3121 ctattatagt ttttgtatat tatcattttg agggtattag ggcacaaggt tttgtaaagt
     3181 attttgctca tttcatggga cctattaaac ttttagctcc tttggtgttt cctatagaga
     3241 tagtctctca tctttctcgt gtggtttctt tgtccttccg tttgtttgga aatattaaag
     3301 gtgacgattt atttttaatg gtaattttag ctttagttcc ttacatagct ccacttcctg
     3361 cttatgtgct tttaactttt atggcatttt tacaagcttt tatttttatg attttaactt
     3421 atgtatattt agcgggtgca actgttgttg aggaaggtca ttgatctata ttttagaatt
     3481 tttcaaaggt gcatctttag ctttaatgct ttttggtgca cttttcttct tttttaaata
     3541 taattctttt ttctatcttt gcttgggtat tataccaggt ttgcttttat ctttaatttt
     3601 tgttttactt atagaaaacc ataagctaaa aaatgaaaat aagttaagat aaaagcaaaa
     3661 aatagtttat tttctaagca tgaagctctt ctttaagcaa atgctttaca gcttcataaa
     3721 ttttaatagc cgctttggat ttattcatag tataaagatg aattccatct acgccacttg
     3781 tgattaaatc gacaatttga tcgcaagcat aagcgatacc tgcatcttct aaagccaaag
     3841 cattattttc atatttttct aaaattttaa caaatttagg agggatttta gctccgcaaa
     3901 gttgagaaat ttttaaaacc tgtcttttgt tagtaatagg cataatacct gcgtaaatag
     3961 gtatgtcaat acctgctaaa gcacaatttt gtttaaaagt ataaaaatct tcattatcgt
     4021 aaaaaagttg agtaatgagc ttgtctgttc ctgcatttac cttagtttta agatggtgta
     4081 tatcctcgat gaaattttta gattcattat gtttttcagg atagcatgcg gcataaattt
     4141 caaagtattc ttgttttttt ataaaagaaa ttaaatcact agcataagaa aaatctttac
     4201 ttttttctaa attttcacat atatcgcctc ttagagcaag aatttgatta agattttttt
     4261 ctttgcattt ttgaagtatc tgagtgattt tttctttact agaatggatg caaggtaaat
     4321 gcactatgct aggaatttga tattcttcct ggattaagct tgcaacttct aaagtatttt
     4381 gtgagttaat agagcctcca gctccaaagg ttacgctgat aaaattaggg cttaattgcc
     4441 ctaaatcatc taagatagca tgaagatttt tgatattttc atcctttctt ggtggaaaaa
     4501 cttcaaaaga aaaactacac atgaaaactc cttataattg ttctcgtatt ttttgcgtag
     4561 ccgtaactaa atttttaaga gaggctataa cttcttcata ggctcttgtt ttaagtccgc
     4621 agtctggatt gatccaaatt tgctccttag gtaatttgtt taaaattttt tctatagtta
     4681 aacttaattc ttctacgctt ggaactctag ggctatgtat atcataaact cctggtccca
     4741 cctcagtttt aaaacgaata gcttttaggg tatctaaaag acttaagttt gatcttgaag
     4801 cttcaaaaga aatcacatca gcatccatag cgtcaatttc ttttaagata tcactaaatt
     4861 cactataaca catatgagtg tgaatttgag ttttagcttt taccccgcta tgcacaagat
     4921 taaaagcagg aatagcccaa tctaaatact cactatgcca atcacttttt cttaaaggca
     4981 gtttttcacg caaagccgct tcatcaattt gtatgatttt tatacctgca ttttcaagat
     5041 ctaatacttc atctcttata gctaaggcaa tttgctcagt gctttctttt agactgatgt
     5101 cttctcttgg aaaggaccaa ttaagtatgg ttacaggtcc agttagcata ccttttacga
     5161 ttttttgact taaactttgt gcaaatttag accaagctaa ggtgataggc tttgtgcgtg
     5221 atacatcacc ccaaattaca ggaggcttaa cgcaccttgt gccatagctt tgaacccagc
     5281 cattttgagt aaataaaaag ccctttaaat tctctccaaa atactccacc atatcatttc
     5341 tttcaaattc tccatgcact aaaacatcaa gtcctatttc ttcttgaatt tgtatgcatt
     5401 ctttgatttt ttgttggtta aattcagtgt agttttgagc tgaaattttt tcttgcttaa
     5461 aggcaaggcg attagatctt acatcggcac tttgaggaaa ggaacctatg gttgtggttg
     5521 gtaaaagagg gagttttaaa aattcttttt ggattaaggc acgttcttta aaactaggcg
     5581 ttctggtaaa atcttctttt tttaaagcct taagccttgc tttgactttt tcatctaaac
     5641 gctctgggat atttttaaaa agctcttgat tggctctaaa gagcggattt tcttcgctag
     5701 aatttagaat ttcttttaaa tctttaagtt cttgaagttt ttctttagca aaggcaaaaa
     5761 gtttaagata gcttgaatct aatttgcttt caaattcagt gctataaggc acatgcaaaa
     5821 gcgaacaaga ggtgtttaag acgatatttt gtgtatattt ttgaagttct ttaataagct
     5881 ttaggctttt agcataatca ttagcataga tatttttgcc gttaataaga cctgcaaaaa
     5941 ggattttatc tttagcaaag ccgtattttt gaatcaaggc taagctttgt ttaccttcga
     6001 taaaatcaag acccaaagca tcaaatttgc tttctaaaag tttaggataa atatctctta
     6061 agtctccaaa atagctttga agtaaaattt taagatcttt tttgtgattt aaaagctctt
     6121 ggtaaaattc ttcaaacaaa gcgatatctt ccttgcttaa atcataaacc aaataaggct
     6181 catcaagttc aagccatgtt actttaagtt catttagttt atcaaaaagc tctatgtaag
     6241 cgtttaaaag cttttctttg gcgagttttt gagttttttc atctttaaag gcaatgagtt
     6301 taaaaagtgt gaaaatgcct attaaaacag gcttgctttc tatgccaagc tctttagctt
     6361 cgagatattc tttaaaaatt ttatcccctg ttaaagctat aatatcagca ttatcgcact
     6421 caggcaccaa ataatgataa tttgtattga accatttttt cattgctaag gctgtaacat
     6481 ctccattttc tccttgataa cctcgacttt gagcaaagta ttcatctaaa gcatctaaat
     6541 ttaaattttt atactttgta tgaacaatgt taaaaagcac agctgcatct aagacattat
     6601 cataaagtga aaaatcatta ctagggataa aatcaatgcc agctttttga atttcttgcc
     6661 agtgtctaat ccttaaatcc ttagcactct ttaaaagctc ctctttagaa ctttggtttt
     6721 taaagtattt ttcaatagca aattttaatt ctctatttgc acctattctt gggtaagaaa
     6781 tgattgaatt tttcatattt gttctcctta aaatgtaggg attaaagcac cctgatattt
     6841 ttcttctata aattttttaa cttcatcgct ttgcaaggcc tttactaggg ctttgatttt
     6901 aggaaggttt tcattacctt ctttaacggc gatgatattg ccatattcac tatatttact
     6961 ttctgtataa agcccatctt ttacagggtt taaacctgct aaaatagcaa aattgctatt
     7021 aataagagaa taatctacat catctaaact ccttgtaagt tgagcgtctt ttaactctac
     7081 aaatttaagc ttcttaggat ttttagtgat atctaaagga gtgatgagct cattatcctt
     7141 aacttctata agtcctttgc ttgctacaat gcgtaaagca cgactttcat ttgtaggatt
     7201 attgggtata gaaatgcttt gtccttcctc ggggttaaat tttttatgtt ttttagaata
     7261 tactgccata ggttctatat ggatactagc aacttttaca agatgagtgc cttgtctttg
     7321 attgaattct tttaaataag gctcatgctg aaaataatta gcatctaact caccattttc
     7381 aaccattaca ttagggatta ccccatcatt gaattcataa atttttaaat cataaccttg
     7441 tttttgaagc gctgatttta taaatcttaa aatatctgca tgaggtgtta tagaagagcc
     7501 aactttaagt tcttcatttg cccatgcaaa actggtaaaa agagtagcga cgcaaaaagc
     7561 tttagtaaat aaagtcattt tttctccttt acgcaaattt aaatttttct atcaagtcac
     7621 tatgataaat acttgccaca tcaggatgag agcgtatcat tcttttaaaa taattacttg
     7681 caacatttct taaaagtgga ttttaggatc agtatccata cctttacttt ctttagcaag
     7741 ctctggattt aacttaaaaa taggtatatc cttatcaagc tgcactccaa gaaaataagc
     7801 tatgctaaag cgttcttttg ggcttaaatt cacgcggtga atagtagctt ttaaatagcc
     7861 attggtagct agttctaaaa attctcctat attaactaca acgctatttt caagtggggg
     7921 tatactaagc catttaccat ctataaaagc ctcaagtccg ctttgttttt cttgaaaaac
     7981 aaaagtgata agcccaccat ctttatgtga acctacgcct tgagtgatat tttttgagct
     8041 ttttggataa tgtatgattt tacaatgttc gtaagaattt tctccataaa gtttatcaaa
     8101 agcattgtta ggtagatcaa gagcttgagc gaaggctttt aaaagcttta aacaagcttt
     8161 tttggtttgt ttgtgccaag ttaagaaagt ttttttaagt tctggaattt cactaggcca
     8221 aagattagga ccttctagtc tttgccataa gggtgagttt aaattccagt ttaaagcatc
     8281 tctttctgtg cctatatcca gttgttctct ataatcctta gatcctgctg tgtattcaaa
     8341 accttcgcta gtataacctc taaattgagg agaatgtacc atagaaataa gctctttcga
     8401 acttctagaa agattaaaaa attctttgcc aagtttgaat aatttctcgt ttaaattttt
     8461 atctatactg gtattgataa gataaaaaaa acctatttta gaagcaattt ctcttaaatt
     8521 tttaagaaaa gtgcttttat ctttttcata agcttgtaaa tcaagtatag gtaagttcat
     8581 ttttgctcct taaattaaaa ttaaggataa gaagatattt tgaattaaat tttattta
//
LOCUS       DAEBKH010000068         8619 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.068, whole genome shotgun sequence.
ACCESSION   DAEBKH010000068 DAEBKH010000000
VERSION     DAEBKH010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8619
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.068"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..416
                     /locus_tag="KIL20_001048"
     CDS             <1..416
                     /locus_tag="KIL20_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HBD2721082.1"
                     /translation="IQRDLDNNLVDIVKNLIPYGCNIVIDHLARANANLTNLEDLICL
                     KNSRIFFKISGFYRAKIDYVNNEQAVKFAKKIYEILKEYFPLSNFVFGSDWPHTNFEA
                     NVNFSSALAAFNEVVVSKKEQEQILGDNACALFDF"
     gene            complement(413..1498)
                     /locus_tag="KIL20_001049"
     CDS             complement(413..1498)
                     /locus_tag="KIL20_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HBD2721083.1"
                     /translation="MNKIEMLKQHFKEIAKLNSSEQVWQMPFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPNTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGLVAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYICFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELVLLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSKAANFMSENADTLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKRKA"
     gene            complement(1495..2727)
                     /locus_tag="KIL20_001050"
     CDS             complement(1495..2727)
                     /locus_tag="KIL20_001050"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HBD2721084.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAHIEDPIGKISKGWKNYAGLNIQ
                     KISIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIRQDKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALAYFNNSNLEVFKADENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGV
                     EDICTYKYIISGEGQIRE"
     gene            2798..3733
                     /locus_tag="KIL20_001051"
     CDS             2798..3733
                     /locus_tag="KIL20_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HBD2721085.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLANEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDENK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            3914..5242
                     /locus_tag="KIL20_001052"
     CDS             3914..5242
                     /locus_tag="KIL20_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HBD2721086.1"
                     /translation="MSSIFSTLSPFRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLG
                     SDALAALALIIPFIMMSFALADMIAIGSAVQISMYLGLGKKNLARKIFSSSMLIIFII
                     SCFIGILEYFLGPVLIDCLNVSDEIKTMAKECMFVFALFAPFTMLSFALDNYLRICGK
                     TAYSMVMNVIIALSNIVLDFIFIVELGWGLFSAALATCLGLVLGGIFGIFPFLFQNLE
                     LKISSLYMNLKIFKNILYNGSSEFFGNISGSLYSIFANFVLLKISDTQAVAAFSIVLY
                     IDSFIIMLIIAMGDAMQPALSYNYAKKDFSRIKAIIKVVFFAGGFLSLFSIVLILIFG
                     ENLITLFTKENNQEFKTFAYTALMLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLSLA
                     QNLFIPLFFLLFLSYFIGLNGVWLSPFFAEFCVLILAWIFLKRIFKDLSL"
     gene            complement(5290..6219)
                     /locus_tag="KIL20_001053"
     CDS             complement(5290..6219)
                     /locus_tag="KIL20_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HBD2721087.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSYNADNSDSSFIPFIGVELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYATGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEFELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAVGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIVLTGIGYKF"
     gene            6373..7749
                     /locus_tag="KIL20_001054"
     CDS             6373..7749
                     /locus_tag="KIL20_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HBD2721088.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVIACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELREKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKILRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            7809..8411
                     /locus_tag="KIL20_001055"
     CDS             7809..8411
                     /locus_tag="KIL20_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721089.1"
                     /translation="MFYTFFVILKQGEKMLKQIAFGGIALTATGYGIKKLYEKLSKPE
                     RKFDTHAIVPSCKDMINTEEYKLKRELEVEQKKNQIQEFLCECMECYSGFSKYFNSKE
                     FLEFEQNFTSKNNHKTEFLLSSYKDQMIKVIDYAKKFECLSAFLETQSEKNDLAVVKM
                     ISESMERKTQRFYLQTKFQTFPQYIFPSVWSSPMWNKQWE"
     gene            8402..8608
                     /locus_tag="KIL20_001056"
     CDS             8402..8608
                     /locus_tag="KIL20_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721090.1"
                     /translation="MGIILGILSLIAGFVAIVLMCSLYFIVFMVFVGMAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
BASE COUNT         2969 a         1185 c         1416 g         3049 t
ORIGIN      
        1 aaattcaaag agatttagat aataatcttg ttgatattgt taaaaattta attccttatg
       61 gttgtaatat tgttatcgat catttagcaa gagctaatgc aaacttaaca aatttagagg
      121 atctaatttg tttaaaaaat tctagaatat tttttaaaat tagcggtttt tatagagcaa
      181 aaatagacta tgtcaataat gaacaagctg taaaatttgc aaagaaaata tatgaaattt
      241 taaaagaata ttttccactt agcaattttg tttttggaag cgattggcca catacaaatt
      301 ttgaagcaaa tgttaatttt tcatcggctc tagcagcttt taatgaagtt gttgtatcta
      361 aaaaagaaca agagcaaatt ttaggggata atgcttgtgc tttatttgac ttttaagctt
      421 ttcgttttat cctaaagatg tattttgcaa tgcgttcaaa atgtactctt agataaggtt
      481 tataaattac aaaaccaccc aaaagtccta aaatgcttcc tattacgaca tcaattaaac
      541 gagcgagtat caatgtatct gcattttcac tcataaaatt agctgctttt gaaagataag
      601 tagcataagg agtaaagaaa atcatagcta aagcatagtt tcgattgact aaaaattgtc
      661 ctataaaaaa caaagacatc ataagtaaaa caagctctat atcgtgaaat tgtttagata
      721 aaagccacca tgcaaaacat actcctaagg ccgttcctat gatgcgttga atttgtttaa
      781 tccatataga atttaaagtt acaccttgca taatagctgt gcaagaaatg gctatccaat
      841 aacttctttc aagttctaaa aaagttccta taaatataga aaaagccaca aaagaaccca
      901 tgatcaaaga atccacaaaa actgcatcaa aacatatgta ttctctaggt ggaatttcgc
      961 taggtaaagc atttttaaat ccataaatca caacgataga atataacaaa gccattaaat
     1021 tagctaccat tgccccaaga aaaacaagac ccactaaaaa gataaaatcc ttagcttcaa
     1081 aaggagaata agctcctaaa acacaagaaa atacaaagaa aaaatatcca ggtgcaccaa
     1141 tgttataata tctaattaaa atagaacttc ccatggccac aagtcctata gggatgaagg
     1201 caaaaattgc aggcaaaaaa tgggttaaaa ttcctaagaa aaaactagaa actatgccaa
     1261 aagaacagca catcacaaca gccattctat gatataaagg agtgtttgga acatataaaa
     1321 aagacaaagc tcctatcatg gcaatgagtc catagtttaa ttttccaaaa aatacactaa
     1381 gccctaaaac tatacccacg cctaaagccg caaaaaaagg catttgccaa acttgttcgc
     1441 ttgaatttaa tttagcaatt tctttaaagt gttgctttag catttctatt ttattcactc
     1501 tcgaatttgt ccttccccac tgattatata tttataagtg caaatatctt caactcccat
     1561 aggacctctt gcatgcaatt tgctggttga aattccaact tctccaccaa agccaaattc
     1621 tcctccatcg ctaaaacgcg ttgaagcatt agcataaata caagatgagt ttataaggcg
     1681 ttgaaattta gcgatatttg aagcatcatt tgagataatg gtttcagaat gcaaggagct
     1741 gtgtttattg atatgctcta tagcttcatc gcaatctttt actaatttta cacttaaagc
     1801 aaaatcaagc cattctgtat caaaggtatt ttcatctgct ttaaaaactt ctaaatttga
     1861 gttgttaaaa taagccaaag cgttttcatg ggcgtgaatt tttaccttaa atttttcaaa
     1921 ttcagggatt aaaagactta taaaattttt agcaattttt tcatggatta aaagcgtttc
     1981 taaagcgtta caaacactta ctctttgaca ctttgcatta aggattattt ttaaagccat
     2041 atctaagtta gcactttgat ctacaaaagc atggcacaag cctttatctt gccttatgag
     2101 aggaatttta gtattgtttg caatttcttg tatcatgttt gaacttccgc gaggtatgat
     2161 cacatcgatt aaatcatcaa aagctagaat ttgcaagatc tcatctcttt gagtaaacat
     2221 agcaaaacaa tcttgcaaat caaattcctt aagtacttta ttaacaagag taaatatagc
     2281 ctcatttgta aattttgctt cacttccacc tttaaataca caagcattgg aactttttat
     2341 cattaaagct gcgatttcag cgctaagact aggccttgct tcgtaaataa cacaaatgag
     2401 tcctaaagga atgcttattt tttgtatgtt taaacccgca taatttttcc agcctttaga
     2461 aattttgcct ataggatctt cgatgtgagc gattttttct aggccttcac aaagagctaa
     2521 aatacgtttt tcatctaata aaagcctatc tttcattgct ccgctttttg tgaaatttgc
     2581 catatctttt ttatttgctt ctaggataat tttgaaattt tctcttaaaa tttgagctaa
     2641 ttttagaata attttttctt tatctttggg tgttaagtta agtagttttt gagaattttt
     2701 cttaatattt tcaagcaaat ttcgcatttt taatccttta tttacaaaaa acttgataaa
     2761 ttatacaaaa aaatttagaa ttgaaaggta aatataaatg aaaaaaatag atttaatcgt
     2821 agtaggtgca ggtccaacgg gcataggctg tgcggttgaa gccaagctta aaaacaaaga
     2881 agttttgata ctagaaaaat caaataacat ttgtcaaact ttaatgcaat tttataagga
     2941 tggcaaaaga gtagataaag cttataaggg atgtgaagga accaatcacg gacatgttcc
     3001 ttttgaagat ggcaccaaag aaagcactat agaaactttt caaaacgctt taaaagagca
     3061 caatatagaa gttgaatttg gttctgaagt tgagagtgtt aaaaatgaaa atggagtttt
     3121 tttagtaagc acagctaaag gtgtttatga gtgtaaaaac attattgttg ctataggtag
     3181 aatgggtaaa cctaataaac ctgattacaa acttcctatg actttaacaa aaatcattaa
     3241 ttttaatgcc aattcagttt tagcaaatga aaaaattctt gttgtaggtg gtggaaattc
     3301 agcagcagaa tacgctgtgg atttggctaa ttcaaatcaa gttagccttt gttatcgtaa
     3361 aaaagaattc acaagattaa atgatataaa tcttaaagat attcatgaag ctggaaattc
     3421 gggtaaggta gagttaaaac taggaattga cattaatgaa gtagaggatg ataatggcaa
     3481 ggctaaggta aattttaccg atggtacaag cgatatttat gatagaatca tttatgctat
     3541 tggtggttct actccacttg attttttaca aaaatgtggg attaatgttg atgataaagg
     3601 cgtgccttta atggatgaaa ataaacaaag caatgttaaa ggcatctttg tagcaggaga
     3661 tattgctact aaaaatggag caagtatagt tacagggtta aatgacgctg tgaaaattct
     3721 ttctgtgctt taaaatttag cctttgggct aaatttttat tttagtttaa tctagaaaat
     3781 tcatatgcaa aataaaataa atattaataa acttattgcg aaattacttt atttaaattc
     3841 ttacatacta ggacttttgg cattttatta gcggtttaaa atatttttaa ttttaaatat
     3901 tttaaggatt attatgtcaa gtatttttag caccttaagc ccttttaggc tttttgtaaa
     3961 atgtgccgtg ccaaatgtta taagcatggc ttttatttct ttttattata tagttgatgg
     4021 aatttttgtt ggaaaatatc taggaagtga tgctttagcg gcactagcct tgattattcc
     4081 ctttatcatg atgtcttttg ctttggctga tatgatagct ataggatcag cagtgcaaat
     4141 ttcgatgtat ttaggtttag gcaagaagaa tttagctaga aagatattta gctcaagtat
     4201 gttgattatt tttataatct cttgttttat tggaatttta gagtattttt taggtcctgt
     4261 tttgattgat tgtttaaatg ttagcgatga gattaaaacg atggctaaag aatgtatgtt
     4321 tgtttttgct ttgtttgcac cctttactat gctttctttt gctttggata attatttaag
     4381 aatttgcgga aaaactgctt atagtatggt aatgaatgtg attatagcat tgagcaatat
     4441 agtgcttgat tttattttta tagtcgagtt gggttggggc ttattttcag ctgctcttgc
     4501 aacttgtttg ggacttgttt taggtggtat ttttggaatt tttcctttct tgtttcaaaa
     4561 tttagagctt aaaatttcga gcctatatat gaatttaaaa atttttaaaa atattcttta
     4621 taacggaagc agtgagtttt ttggcaatat ttcaggatct ttatatagta tttttgcgaa
     4681 ttttgtttta ttaaaaattt ctgatactca agccgtggca gccttttcta tagttttata
     4741 tattgatagt tttattataa tgcttattat tgctatgggt gatgcaatgc agcctgcgct
     4801 tagttacaac tatgctaaaa aagatttttc aagaatcaaa gctattataa aagtggtatt
     4861 ttttgcaggg ggatttttat ctttattctc tatagtgctt atattgatat ttggagaaaa
     4921 tttaatcacg ctttttacaa aagaaaacaa tcaagaattt aaaacttttg cttatacagc
     4981 tttgatgctt tttgctttta attatttttt tgcatggttt aatgttttaa gtggttcttt
     5041 tttgacagct tttaataagg caagcttttc tttggtttta agtttggcgc aaaatttatt
     5101 tatacctttg ttctttcttt tgtttttatc ttattttata ggtttaaatg gagtatggct
     5161 aagtccattt tttgctgaat tttgtgtttt gattttagct tggatttttc ttaaaagaat
     5221 ttttaaagat ctatctttat aggagataga tcttttttaa attttatcaa aggagctttt
     5281 ttataatttt tagaatttat atcctatacc agttaggaca atttgatagg tttcatcata
     5341 aaatcctata tcactatttc ttttttctat accataattt gcaaaaccat aaagtccgtt
     5401 ataacccaaa aattgatttt taacaacttt tagattaagc ttaactatat taccatcttg
     5461 ttttttatgg aagataggat cagttcctac tgcttcatat ttgctaagat ttaaatttgg
     5521 agtgaagatg taatcattag caaaagccaa atttgttcct atgctaaaac catatcttga
     5581 atagctttga gcttttccgt ctgcatcatt gtaatcataa tttaacccta ggtttaataa
     5641 gctataatta tagtttaatt caaattcgtg ataatacccc tcccttttta aagagctttg
     5701 tgcgatagtg tctttatcat atttgttttt gctaaataaa tatgaagtgg taaatttccc
     5761 aaaatcactt tcataaagtt gagagatttt aaaaccatat ctatcaacat cagtttcttc
     5821 tctatttcct gttgcataag gatttgcata agctttttct cttaaagagg aaatcacaga
     5881 aaaagaagtg ctaaaacgct ctaaataagc tctttcgtag cctaaagcta taccgctgat
     5941 atctcttcca ttgtagtttt taataaaaat tctatcatta tctataaggt tgccatagta
     6001 aagttctaca ccgataaaag gaatgaaaga ggagtctgaa ttatcagcat tgtaactgct
     6061 tagataatca ctgtttgcca aggttgaaat attactttta atatcccttg cacccacacc
     6121 tatgcttaaa tttccactaa aaccttcttg aaattctaca gccgtagctg attgggttaa
     6181 aatggaggct aaaacacagg aaaataaata ttttttcaaa tgttctcctt gaaatgtttg
     6241 ttgtttgtaa ttaaattaca tttataattg taactaatat tacattaaat atttataaaa
     6301 aaattaagtt ttataattta agttttttta gatagaattt ttagaattaa tttatattta
     6361 taaggaaatt tagtgcagca agagtattat gacttggatt tagaacgagc tattttaagc
     6421 agttgtatca tgagtgaaga agcttatgct agtatagcag gtgatattag cccaaaagat
     6481 tttagtctta aagctcacca agatattttt aaagcggtta tagcttgtag taataacaaa
     6541 gagcctattt ctgtaagttt tttaagaaaa cataaaaaaa tagatgagca aattttagca
     6601 gaaattcttg ctactccttc tatgatagat ttgcctgctt atgtaaatga acttcgcgaa
     6661 aagtctgtaa aaagacagct cttgagtttt gcgcatcttt tgccaactcg tatcaatgaa
     6721 gatcgtgctg taagtgaaat cgcagatgaa attggtaaag aaatttttag cattacaaat
     6781 cgtgtgaatt ctagagatat taaagatgtt gatatggtaa tatcagaact ttttgaagaa
     6841 tttaaaaagc aaaaaacttt agaaaataaa ggtattatag ggcttgatac aggttttgaa
     6901 ggtctaaata aaatgacaaa aggttttaaa gggggtgaac ttataataat cgctgcgcgc
     6961 ccaggtatgg gaaagacaac tctttgttta aatttcattg acaagatttt aagacaaaaa
     7021 aaaggcgtgg ctttgttttc tcttgaaatg cctgcaactc aaatcatgca aagaatgcta
     7081 tcttccaaaa cttccattcc tttgcaaaaa attttaactg cagatttaaa cgatgatgaa
     7141 tgggagcgtt taggagatgc ttgtaatgat tatagtcaaa agaaattata tatttacgat
     7201 agtggttatg caactatcgc tgatgtaagg gctattttaa ggcgtttaaa atctcaagat
     7261 gaaagtatag gactttgtgt gattgactat ataggactta tgatgagtaa ttcaaatttt
     7321 aatgatagac atttgcaagt tagtgaaatt tcaagaggac ttaagctttt ggctagggag
     7381 cttgatatgc ctattatcgc actttcacaa cttaatcgtg gcttagagca aagggcaaat
     7441 aagcgtcctt tgatgagtga tttgcgagaa agtggagcta tagagcaaga tgcggatgct
     7501 attttgtttg tatatcgcga tgaggtttat agagaacaag aagaaaaaga aagagagaat
     7561 aaagctaaag ctgaaggtaa agcttatcaa aggcttttta taccaaatcc tatgcaagaa
     7621 aatgctgaaa ttattgttgg aaaaaataga aatgggcctg ttggaactat agaagttgta
     7681 tttttaaaag aaaaatcttg ttttgtagat aaacctatag gctatgaaac tactgaattt
     7741 acaggctagc tttaatcaaa taatttaata ttttaaagtt attttttacg acacaacctg
     7801 tcgcaagggt gttttatact ttctttgtta ttttaaaaca aggagagaaa atgttaaaac
     7861 aaatcgcatt tggtggtata gctcttacag ctacaggata tggcataaaa aaattatacg
     7921 aaaaattatc caagccagaa agaaaatttg atacacatgc tattgttcca agctgtaagg
     7981 atatgatcaa taccgaagaa tacaaactta aaagagagct tgaagtcgaa caaaagaaaa
     8041 atcaaattca agaatttctt tgcgaatgca tggagtgtta tagcggcttt tcaaaatatt
     8101 ttaattctaa ggaattttta gaatttgagc aaaattttac ctctaaaaat aatcataaaa
     8161 cagaatttct tttgtcatct tataaagatc aaatgataaa agtgatcgac tatgctaaaa
     8221 aatttgaatg cttaagtgct tttttggaaa cacaaagcga aaaaaatgac ttagcggttg
     8281 taaaaatgat aagcgaaagt atggagagaa aaacacagag attttatctg caaacaaaat
     8341 ttcaaacttt tcctcagtat atttttcctt ctgtgtggag ttctcctatg tggaataaac
     8401 aatgggaata atacttggaa ttttaagtct tatagccggc tttgttgcta tagtgttgat
     8461 gtgtagttta tattttatag tgtttatggt ttttgttggt atggcgatac ttatttttct
     8521 ttctatgcaa ccttatcctt acaatataat attttgtgct atatatttaa tcacaatttt
     8581 agcgctagtg ctatggcgta aaacttaaaa atttcactt
//
LOCUS       DAEBKH010000069         8518 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.069, whole genome shotgun sequence.
ACCESSION   DAEBKH010000069 DAEBKH010000000
VERSION     DAEBKH010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8518
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.069"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..2128)
                     /gene="flhA"
                     /locus_tag="KIL20_001057"
     CDS             complement(<1..2128)
                     /gene="flhA"
                     /locus_tag="KIL20_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HBD2721091.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAAASQSGAGGTTAAPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKIKNDYPIIVEGALGVAPVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIA"
     gene            complement(2115..2525)
                     /locus_tag="KIL20_001058"
     CDS             complement(2115..2525)
                     /locus_tag="KIL20_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HBD2721092.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
     gene            2700..2972
                     /gene="rpsO"
                     /locus_tag="KIL20_001059"
     CDS             2700..2972
                     /gene="rpsO"
                     /locus_tag="KIL20_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HBD2721093.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            complement(3054..5894)
                     /locus_tag="KIL20_001060"
     CDS             complement(3054..5894)
                     /locus_tag="KIL20_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HBD2721094.1"
                     /translation="MLAPSMGEWVYKANLFLFGEFGYYYPFSLLILNYLYYKKNYKIE
                     NFKRRELFGFSLAFFSTLLLFSVFYRGFGYILEIVYGFFSIILGHTGSGIFALLLLLF
                     SLILLFPKFAKEILKIELDFTYLLKVEQAFKSLLMRVFGGENEKEDIGKSEPMVPKLN
                     ILQDNIYENSQINEKEKTNNLEQIIKDSNINASKNSITTAKENFEKLKNQILDETIEI
                     DKQSLKESRSFVYEHSQQVRNFAQKASKMSISLDEDFNFISEEEVDMIPERFLKPKKL
                     EDIKQIDTNKNLDEPSYKRKNIEIPVSKQEVKPKIFTKELELRENLIKKEKLEQEYKA
                     YQNEILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIKTETEESNKINENKNP
                     DKTDNIFEFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLDFIQNTETKIDDKKTNDQ
                     EIKLQKAVLAKEIAINQALLREIEQGEVEKPKDFTLPPLDFLANPKEHRQEINESEID
                     KKIYNLLEKLRRFKIGGDVISTYVGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAK
                     SIRIQAPIPGKDVVGIEVPNDEIQTIYLREILQSEVFKNAKSPLTIALGKDIVGNAFV
                     TDLKKLPHLLIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIP
                     HLLTPVITDPKKAVNALSNMVAEMERRYRLMADAKTKNIENYNEKMKELGEEELPFIV
                     VIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSR
                     ISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDF
                     LKDQQSVEYDESFLKDQQSAGVTTNESFDGEVDELYEEAKRVILEDGKTSISYLQRRL
                     KIGYNRSANIIEQLTQNGVLSEPDAKGQREIL"
     gene            complement(6004..8253)
                     /gene="flgL"
                     /locus_tag="KIL20_001061"
     CDS             complement(6004..8253)
                     /gene="flgL"
                     /locus_tag="KIL20_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HBD2721095.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQGYVKDNGLDPDKDFEYDDKLDFPPTTLYVQGTKPDGTSFKSAVLVKPEDTLE
                     DVMENIGALYGNTSNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADDRAEL
                     TGIIDAAKQEGISMDEVTNRVMQAATAAPSNGDITKLNSPVTVTINNQQFTIDLKQTD
                     FIKSKMTDTDGNATNGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMAG
                     DSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPITHTDPATGNSG
                     VVTGSNDITYGQINDIIGMFAADKIPTQSITATNGKVDANGYNNLQQLMKDSQATVDV
                     SMDYKGRISVTDKLSSGTNIEISLSDSQSGHFPQPPFSTTSSVTNGPNFSFSANNSLV
                     IDEPNVDIIKDLDSMIDAVLKGNMRADSESEDPRNTGMQGALERLDHLADHISKLNTT
                     MGAYHNTIEDVNTRSTFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTI
                     SQLSLLNYM"
     gene            8434..8517
                     /locus_tag="KIL20_001062"
     tRNA            8434..8517
                     /locus_tag="KIL20_001062"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8468..8470,aa:Leu,seq:caa)
BASE COUNT         2710 a         1465 c         1199 g         3144 t
ORIGIN      
        1 ctgcaatttc tgcaaaactt aacactacta tattaatgct aaaattataa caaatatcag
       61 caatgaattt tctaagctgc ggttcaacgc aaagtataaa aggcttgata cgaccatttg
      121 ctaccgcggc aacttcagcc cttagagtat ctactaaagt gcctgtttga gctacactta
      181 aaggcaagtg ataacttcca tctctaaatt gtacattttc cattaaaact gcagagctag
      241 cagagtctaa gataaaaata tccaaatttc ctttatcatc taaatacata tttgtaatca
      301 tcctagctaa agacgctctt acatgttcaa taatcatatc aaaactcttg cttacttctg
      361 ctatatcgct tacagattct aaaatagtaa gcatatcttt aattggtatg tgatgcttaa
      421 gcaagtcttt gagaattttt tgaataagac ttacaggtgc aacacctaaa gcaccttcta
      481 cgatgattgg ataatcattt ttaatcttat caagaagatt ttgcacctct tggcgtgtaa
      541 gaagttcgct tgcatgtgct ttgataagtt cgctcatatg tgttgaaata acacttgcag
      601 gatctattac tatatagcca tttaatgttg cttcatcttt taaattcgca tcaatccaaa
      661 gtgcatcaga gttaaaagcg ggttcttttg tagcaatccc ttctatctct tctgtgataa
      721 aaccactatc catggctaaa tatttatccg gataaatttc ggcacttgct atagacacgc
      781 ccttgagttt aaaactatac tcatttggtt taagtcttaa attatctctt attcttattt
      841 ttggcattaa aaatcctaaa ctttcagcaa tacttcttct cattgagcga atcctttctg
      901 taagttcgtt ttcagcaagc ttaataagtc cgtatccaag ttcaagttct aaaatttcaa
      961 ctttaagtat gtcgttaatc ttgtgttctt cttctttgag aatttcttct tcgcttttct
     1021 tagcaggcgc tgccgttgtc ccacctgctc cactttgaga tgcagctgca gcacttggtt
     1081 tgcttttttt aactgtagtt atatcaattt taccttcctt aacctgcttg gtaagatagc
     1141 caagacttaa aaaaactaaa gccataaagc ccaaggataa agttggtaag ccaggtacta
     1201 acgcaaagat aaaaagtaca aaacctacta ttaaaagcgt gcgatattcg cttaaaagtt
     1261 gagttaaagt tccttctgca aaattttcct catctttgct tgcacgagtg ataattatag
     1321 cggttgcagt agaagtaata agccctggaa tttgcgatac aagtccatca cctatggtta
     1381 aaatagtata agtagaagca gcatcgctta aagccatatc gtgctgaaaa gatcctatta
     1441 aaaaaccacc tatgatattt ataatagtta tgataattcc tgcaacagca tctcctttga
     1501 taaatttaga agaaccatcc attgcgccat agaagtttgc ttcagcaata acttcttgac
     1561 gtcttgctct agcggtttgt tcatcaataa gccctgcatt taaatccgca tcaatagcca
     1621 tttgtttacc tggcatcgca tcaagtgtga atcttgcttg tacttcagaa acccttgtac
     1681 taccttttgt tacaaccatg aaattaatca atactaagat acaaaataca atcacaccaa
     1741 tgaccatatt tccaccaaca acaaattctc caaatgctgc tataatctca ctcacggctt
     1801 cagggccgtt ttgcccttcg cttaaaatca tccttgtagt agctatattt aatgaaagtc
     1861 taaataaagt aataatcaag attaaagttg gaaaagttgt taaatctgtc ggtttgggta
     1921 tataaataga aattaaaata attaataccg ataaagctat gcttaaagct aagaaaaagt
     1981 ccaaaatagg acttggtaaa ggaactataa taatagctaa aatacaaact aaaaaaccaa
     2041 caatagttaa gcttttagct tttaaaacag gagcaattaa aggccccaag aaaggaaaaa
     2101 ctaaatcgac tattttattt tttgccatta tttttcataa tatcttctaa agtaatagaa
     2161 tctaaaaatt catctacttt attttgtaaa tttactaaca taggcattaa ggtgcaattt
     2221 tcttctttat tatttggaca agtgccacca ctgcattcaa atacactgat atcctttttt
     2281 tcggcactat taacaatttc ttttatagta tattgacttg gttctttgat taaaacaaaa
     2341 ccaccttttg cccctttaaa ggattttaac aagccatctt tagctaaagt ttgtaaaatt
     2401 ttagctaaaa aacttttagg aatatcaagc tctaaagcta aagaatctac atcttgaggt
     2461 gtttcttttt gagaaatata aattaaagaa agtaaagcgt attcgctagc tttggtaaat
     2521 agcacagatt ctccttatta taactacaga aatagctgta attataataa ataattctta
     2581 gaaaaagact taaattttga caaaaccttc taaaaaagat aaattcagtt tattttttgc
     2641 tttttaaggt aaaattatag ttctttaatt ttattatttt accaatcagg aggtctatca
     2701 tggctttgga ttcggccaaa aaagcagaaa tagttgcgaa attcgctaaa aaaccaggtg
     2761 atactggttc aacagaagtt caagtggctc ttttaactgc aagaattgca gaacttacag
     2821 aacatttaaa aatctacaaa aaagactttt catcaagatt aggactttta aaacttgtag
     2881 gtcaaagaaa aagactttta tcttatctta aaagaaaaga ttataattct tatagtaagt
     2941 taattaccga attaaatctt agagataaat aattttaagc cctttttact gggcttttat
     3001 ctttataaat tcttctttat gtaattagtt tttatatcaa aataaaaaaa atcttataaa
     3061 atttcccttt gtcctttggc atcaggttcg cttaaaactc cattttgagt aagttgttca
     3121 ataatatttg cagagcggtt atagccgatt tttaaacggc gttgcaaata agaaatgctt
     3181 gtttttccat cttctaagat tactctttta gcttcttcat aaagctcatc tacttcccca
     3241 tcaaagcttt catttgttgt aacacccgcg ctttgctgat cttttaagaa gctttcatca
     3301 tattctacgc tttgttgatc ttttagaaaa tccacgattt tttctatttc aaattcactc
     3361 gcaaaaggtg catgcaaacg cactatagaa cttgttccag gaggagtaaa taaacaatct
     3421 cctcttccaa gtaaactctc agcacccata gcatctaaga taaccttaga gtcaattttt
     3481 tgccctactt tataagaaat tctacttggc aaattcgctt taattagtcc tgttacaaca
     3541 tcaacagaag gccgttgtgt ggctacaatc aagtgaattc cacttgctct tgccatttga
     3601 gcaagtcttc ctatataaaa ttctacatct ttacccgcag tcatcattaa atcagcaagt
     3661 tcatcgataa ttactacaat aaaaggaagt tcttcttcac ctaattcttt cattttttca
     3721 ttgtaatttt ctatattttt ggtttttgca tcagccatta aacgatagcg tctttccatt
     3781 tcggctacca tatttgaaag tgcattgact gctttttttg gatctgtgat aacaggagtt
     3841 aaaagatgag gaatgtcatt ataaatgcta aattcaagca tcttaggatc tatcatcatc
     3901 aaacgcaagg ttttaggaga gttgcgatat aaaagactta aaagcataga atttatcccc
     3961 acacttttac cactacctgt agttcctgca ataagcaaat gcggaagttt tttaagatcg
     4021 gttacaaaag cattacctac tatatcttta cctaaagcta tggttaaagg gcttttagca
     4081 tttttaaaaa cttcactttg taaaatttcc cttagataaa tggtttgaat ttcatcattt
     4141 ggaacttcta tgcctacaac atcttttcct ggtattggag cttgaatacg gattgatttt
     4201 gccattaaag ccatagttaa atcatcttgt aaatttaaaa tacgacttac ttttacatct
     4261 gcactaggac gaaattcaaa agtagttaca acaggaccaa cataagtgct tataacatca
     4321 ccgcctattt taaaacgacg caacttttca agaagattat aaattttttt atctatttca
     4381 ctttcattga tttcttgtct atgttctttt ggattagcta aaaaatctaa tggcggcaag
     4441 gtaaaatctt ttggtttttc tacttcgccc tgctctattt cacgcaataa agcttggtta
     4501 atagcaattt ctttggctaa aactgctttt tgaagtttaa tttcttgatc atttgttttt
     4561 ttatcatcaa ttttagtttc tgtattttgg ataaaatcga gtgtattttt ttcttctata
     4621 actatttcat ttatattttt tataggagta ggttctatat aaggatgatt taactcttct
     4681 acaatgggag caaattcaaa gatattgtct gttttatctg gatttttatt ttcatttatt
     4741 ttgtttgatt cttctgtttc tgttttaatt gtttttgggc tattaaaact atatttattc
     4801 ccttctataa tatcgcttga atttatcgca tcatattctt ctaatttttt aatttcttgt
     4861 tttactttat tttctaaaat ttcattttga taggctttgt attcttgttc tagtttttct
     4921 ttttttatca aattctctct aagttcaagc tcttttgtaa aaatttttgg tttaacttct
     4981 tgtttagaaa ctggaatttc aatattttta cgcttataac ttggctcatc taaattttta
     5041 tttgtatcta tttgctttat atcttcaagt tttttaggtt ttaaaaaacg ttcaggaatc
     5101 atatctacct cttcttctga aataaaatta aaatcttcat caagactaat gctcatttta
     5161 ctagcttttt gtgcgaaatt tcgcacttgt tgagaatgct cataaacaaa acttctcgat
     5221 tcttttaagc tttgtttatc aatctctatg gtttcatcta aaatttgatt ttttagtttt
     5281 tcaaagtttt ccttagctgt ggtaattgaa tttttacttg cgttgatatt gctatcttta
     5341 attatctgtt ctaagttatt ggttttttct ttttcattta tttgtgaatt ttcgtatata
     5401 ttatcttgta aaatatttaa ttttggcacc ataggttctg atttgcctat atcttctttc
     5461 tcgttttctc caccaaatac acgcataagt aaagatttaa aagcttgctc tacttttaat
     5521 aaataagtaa aatctaattc tatttttaaa atttcttttg caaattttgg aaacaataag
     5581 atcaaagaaa atagtaaaag caaaagagcg aaaattccac tccctgtatg ccctaagatt
     5641 atagaaaaaa atccatatac aatttctaaa atatacccaa accctctata aaagacagaa
     5701 aataaaagta aagtagaaaa aaaggctaaa gaaaaaccaa aaagttctct acgcttaaaa
     5761 ttttctattt tataattttt tttataatag agataattta atataagcaa agaaaatgga
     5821 taataatacc caaattctcc aaataaaaat aaattagcct tgtaaaccca ttctcccatg
     5881 ctaggtgcta gcatacaaag acaaagataa aaaataacaa gtgtagagct ggtaaaaatg
     5941 gcttcttttt taatattctt tccttgaaaa taaaatcaaa gccaaattat accataaaaa
     6001 attttacata taatttaata agctaagttg ggaaattgtt gtactagctt taagagaagc
     6061 ttgatatgca agttgaactt gcattaaatt catcattgct tcaccataat ctacatcaat
     6121 aacatttgat ttgatagatt gtacattcac gcttaaaaaa gtagaacgag tatttacatc
     6181 ttctattgtg ttgtgatatg cacccatggt tgtattaagc ttactaatgt gatctgctaa
     6241 atgatcaagc ctttctaaag ctccttgcat acctgtattt ctaggatctt cactttcaga
     6301 atctgctctc atattgcctt ttaaaacagc atcaatcatt gaatctaaat ctttaataat
     6361 atccacattt ggctcatcaa taaccaaaga gttgtttgca ctaaaactaa agtttggacc
     6421 atttgttact gaagaagttg tgctaaatgg tggttgtgga aagtggccac tttgagaatc
     6481 gctaagagaa atttctatat tagtacctga agaaagttta tcagtaacac taatacggcc
     6541 tttataatcc atacttacat caacagtagc ttgtgaatct ttcatgagtt gttgtaaatt
     6601 attataacca tttgcatcaa cttttccatt tgtagctgtt atgctttggg ttggaatttt
     6661 atctgcagca aacataccta taatatcatt aatttgacca taagtaatat catttgatcc
     6721 tgtaacaact ccactatttc cagttgcagg atcggtatgg gttataggaa aacttatagt
     6781 ttgacctgga ttattaggat caggatagct tacagttgaa gtttgtaaat ttatagtaac
     6841 atcgtaagaa tttccacctt tggaattgac ttttaaattt aaagtagtac catttaggct
     6901 atctcctgcc attacctcac taagtttggt tgaatcagtc gcataagcat tgcttccttt
     6961 gataacttga gaaacattac cataaacagt atttccattt ttttcaaaat atacattatc
     7021 ataatcagcc ccattagtag catttccatc tgtatctgtc attttacttt tgataaaatc
     7081 agtttgtttt aaatcgattg tgaattgttg attattgatt gttacagtta cagggctgtt
     7141 taattttgtt atatctccgt tactaggagc agctgtagca gcttgcataa ccctatttgt
     7201 aacttcatcc attgaaatgc cttcttgttt ggcagcatca ataatacctg taagttcagc
     7261 tctatcatcg gcttgtggtg tgaaagctac agcgtgaaaa tcgagtttgt tgttgccttg
     7321 ctttagatct gtaatttgaa tttgaccact atcattcatg cttacttcta ctactttatt
     7381 atttgaagta ttaccataaa gagctccgat attttccatt acatcttcta aagtatcttc
     7441 aggttttaca agtacagcgc ttttaaagct tgttccatca ggtttagtac cttgaacata
     7501 aagagttgtt ggaggaaaat ctagtttatc atcatattca aaatctttat caggatccaa
     7561 accattatct tttacataac cttgtccgat aagctgttgc catttagaat ctcctgtgag
     7621 atatttagtt ttatcagggt ctttatttaa atcccaacga ttatctgtaa aactaacatt
     7681 ggtgcttatt tgttttttat agtctccgtc tgctttaaaa aataaatccc agcctggtat
     7741 attgtatggg ctttcagttc cagctccagt tactacatta atattatttt tatctccata
     7801 ataatttcca ttagaatcaa aaggtttgtt tgcaacttga gaacctgcaa aaagatactg
     7861 accattaaca ctggtatttg caagctgaac tatactttct tttatgcgtt ctagttcttt
     7921 tgctatagcc tctcttgagg tttgagaatt gctatcgctt gcagcttgag ttactttaac
     7981 tttaaaatct tcaagaagtt taaccatgtc ttgtaaagct ttcatgctat tttgagtcat
     8041 ttcttgagct ctactagttg attcttttac ttgctctaat gttttaattt catattcaag
     8101 acgcgtatta tctatataag tgcttgcatc ttcatatgaa ttttgaattt ttaaacctga
     8161 agcaagttgt tgagatatct gatataaagc actttgaccg cccatagaat tattcacgct
     8221 atttgtgaag ttaagtttat ttgtaattct catttttttc ctctaaagta ttaaagttaa
     8281 aatcttttca aacattgcta ataaacaaaa gcaataactg ttccaaaaat ttaaattata
     8341 taattttata tcgtcttttt gaaaatactt tttattttta aagtattttt tagcctaaaa
     8401 aagtataatt ttagctttaa atcttaaaaa tgagcccgag tggtgaaact ggtagacgcg
     8461 ccagactcaa aatctggtaa gggcaacctt gtgtcggttc gagtccgacc tcgggcac
//
LOCUS       DAEBKH010000070         8515 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.070, whole genome shotgun sequence.
ACCESSION   DAEBKH010000070 DAEBKH010000000
VERSION     DAEBKH010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8515
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.070"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            166..681
                     /gene="nrfH"
                     /locus_tag="KIL20_001063"
     CDS             166..681
                     /gene="nrfH"
                     /locus_tag="KIL20_001063"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HBD2721096.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            696..2528
                     /locus_tag="KIL20_001064"
     CDS             696..2528
                     /locus_tag="KIL20_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HBD2721097.1"
                     /translation="MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQIDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGSHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADTKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            2664..3218
                     /locus_tag="KIL20_001065"
     CDS             2664..3218
                     /locus_tag="KIL20_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721098.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEYLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQN
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            3282..3371
                     /locus_tag="KIL20_001066"
     tRNA            3282..3371
                     /locus_tag="KIL20_001066"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3316..3318,aa:Ser,seq:gct)
     gene            complement(3444..4436)
                     /gene="ceuB"
                     /locus_tag="KIL20_001067"
     CDS             complement(3444..4436)
                     /gene="ceuB"
                     /locus_tag="KIL20_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HBD2721099.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTTKTNTATMKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVAGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVIDRNIIVGNK
                     ERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            complement(4449..5204)
                     /locus_tag="KIL20_001068"
     CDS             complement(4449..5204)
                     /locus_tag="KIL20_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD2721100.1"
                     /translation="MIKLKNITKFYDNKAIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMKLKDYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNANDKIKINEALEYMGLSNLRNEFLDTLSGGQKQRAFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQIDGKKICIYF"
     gene            complement(5201..6139)
                     /locus_tag="KIL20_001069"
     CDS             complement(5201..6139)
                     /locus_tag="KIL20_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HBD2721101.1"
                     /translation="MRKKMLILSFLTLGMIGIFILVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDILILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVANITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISVVINFLGGIYFIYLVLKGNKL"
     gene            complement(6132..7100)
                     /locus_tag="KIL20_001070"
     CDS             complement(6132..7100)
                     /locus_tag="KIL20_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD2721102.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FAGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDVALNL
                     GISYNGILFLGLMIVSIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKVYA"
     gene            complement(7186..8175)
                     /locus_tag="KIL20_001071"
     CDS             complement(7186..8175)
                     /locus_tag="KIL20_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HBD2721103.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALEYEKQGDYKKAMEIYKKLALK
                     NSSVLISQEQNNSSKATQTQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFAYSFNSLGVNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDFPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPESKKDDDNPAILHYMGIFDVNLAYLGDDYFINLMLRNNLK
                     FHDNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
     gene            complement(8172..>8515)
                     /locus_tag="KIL20_001072"
     CDS             complement(8172..>8515)
                     /locus_tag="KIL20_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HBD2721104.1"
                     /translation="LYSILSNFKNEFVFVLSVDSPKVGENELLKMLPFLEQNYKIIIA
                     KTPLHTHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSEIKTKFVEFEDEDAFLNLNFY
                     EEYEKFKSELK"
BASE COUNT         3039 a         1244 c         1349 g         2883 t
ORIGIN      
        1 tattttatca tttattttga aattattgaa taaaagtttt aaatttttag gttaattaag
       61 agtaaatata tctttaaaat tatattaaat tcatctatgt tagaatcaca aaatttattt
      121 ctgggaaatt ctgtgacatt gttgtttcat tgaagatttt aagaaatgat aattttaagg
      181 aggaaaattt tgaagaaaac ttcgaatctt tttactattt ttcttgtttt gctttttgtt
      241 ttctttgcgg ttggctttta taccttttat aacgctaagg gcacatctta tttaagcaat
      301 gcaagtgaat cttgtaataa ctgccatatt atgaatgaag tttataacga atacatggca
      361 gggccgcact ctcaaaaagt caaaggcgaa ccaagagcaa cttgcgtgga ttgccatttg
      421 ccacataatt ttgtagctaa gtggatagct aaggctcaaa gtggtttagg gcatgcttat
      481 gcttttactt ttaaacttga tgagttgcct acaaatttga gtgcgactga aaaaagcaga
      541 aaaatggtgc aagaaaactg catacgctgt catgcagatt ttgctcaaac agctatcaat
      601 gctacaacaa atccacatgc agacaagtca ttaaattgtg cttcttgtca taaagatgtt
      661 ggacataaac acggaattta ataaggagaa gatgaatgaa aaaaaatatt ttacgcttag
      721 gtattgtcgt tttggtttta cttatagcgg gagttttatg gctaaataat gatatcaatc
      781 aaaaaaaaga agatgaagca aataaaaatg ccattgcagc aaatgctgat ttttctttgc
      841 ttagcgatga tgatccaaat tttgaaaaat ggggtaaggt ttttccagag caactaaaaa
      901 tgtatttaac ggttgaaaaa gaagagccta aggctactga atttggtggt aatttagctt
      961 attcaaaatt gattcgcttt cctcaattaa ccatactttg ggcaggatat ccttttagcc
     1021 ttgatttcaa tgaagaaaga gggcattttt gggttcaaat agatcaaatg aaaacagcaa
     1081 gaaacaacaa agattttctt aatgcccatg gacttgctgc ttttaaaggt caacccgcag
     1141 cttgtatgaa ttgtcatagt ggatggactc catggcttat aaaaaatgtt gctaaaggag
     1201 attttactgc ttttaactct acaaattatt ggactatgat taaaaatatc ccagctgttg
     1261 atggtatagt agaaaattca cctgaacatg caggctcaca tggtggtaaa agaatgggtg
     1321 taacttgtgc agattgtcac aatccaaatg atatgagttt aagacttact cgtccagcag
     1381 ctattaatgc tttagtttct agaggatatg aaaaagatcc agtacaaggc gtaaaagcta
     1441 caagagaaga aatgagaact ttagtttgct ctcaatgcca tgttgaatac tattttaaac
     1501 caacagggga aaaagtaaaa gtaatgggtg aaactattgt agatgatagt tctaaaaaat
     1561 ggtggaatgg aactcagaaa aattatgatg agtatgaatt ttggagagat ggcaataaag
     1621 ctaaagagat tgaaaccgat ggtatagttt taacttttcc ttggagtgaa tggaaaaaag
     1681 gacaaccatt tagaattgaa atgctagatg attattatga taaagttcgt ggagtatttg
     1741 gagctgattt tactcataaa ttaacaggag cgcaaattat taaaattcaa catccagaaa
     1801 gtgaacttta tagtggcggt gtgcatgctg caaatggggt aagttgcgtg gattgtcata
     1861 tgccttatgt tagagaagga gctaaaaagg ttactcaaca caatatcact tctcctttaa
     1921 gagatattaa ctctgcttgt aagtcttgtc ataaacaaag cgaagattat ttaaaagctc
     1981 aagtgcttga catacaaaat agcgttgcgc atgatcaaag aactgcagag tacgcaattg
     2041 ttagtttgat tatggatact aaaaaactac gcgatgagct aggtaatatg gaaaaattcc
     2101 aaagcgatgg aaaagctgat acgaaaaaaa ttagtgaaga gctaaaagaa gttttagaac
     2161 ttcatcgtaa agctcaaatg agagcggatt ttgttaatgc tgaaaactca actggtttcc
     2221 ataatcctcg cgaagcttca agaatgttat tgcaagctgt tgatatggca agaatgggac
     2281 aaactaaact tgtagaaatt gcagcggcaa atggaattaa agattttaaa acttcaaatt
     2341 taggttttga agatattcaa aaatttaatc caggagagct ttattataaa gtagatgtta
     2401 ataatcataa agctggagag cgttactatg cagatgaaaa agatgttaat ggcaatcctc
     2461 caaaagaact tttagagcat gataaagagc ttgctcctta taattatcaa gtgattgata
     2521 aaaaataatt cttaagccct ataatcatag ggctttttct tttctttgtt ttaaaaaata
     2581 taaacttttt atttaaaatt cacttttgct tcactttgtt ttgtcaaaat atcacaaatt
     2641 ttgataatca aaaaggagtt aaaatgatca ataaaaataa attgtttaga caggttcata
     2701 tctatcttag tttgttcttt ttgccttgtg ctttgctttt tgctttaacg ggtatagcat
     2761 atatttttgg tattaatcaa gatgtgggct taaaagttga gcaatatcaa ttgtcaaaag
     2821 ttatagaaag tggtaaagaa agagaagctt taatagagta tttaaaaaca aatggtttaa
     2881 aagtaccatc taatacaaat ataattaaaa gcaaagataa aggtataaca ataggtggaa
     2941 ctcattatag tgctaatata actcaaaatt ctactaatga atacaatatt accttaaaaa
     3001 caagatcttt gcttggagat atgattatgc ttcataaaga taagggtgct tggtattttt
     3061 ctgtgcttag cgtaggtttt ggtattactt tatttatgct ttatatttca gggcttatga
     3121 ttactttgtt tgcaaataaa aaagatagaa gtaaacaatt tgcagttctt ggagtagggg
     3181 ttgttgtaac tttgcttttg gcttatctta gcctttgatt tttcctagct ttttaagcta
     3241 ggtattattt atttttttgt ataatcacac tttactttat tggacagatg ggtgagcggc
     3301 tgaaaccaca cccctgctaa gggtgcagat cttaacgggt ctcgagggtt caaatccctc
     3361 tctgtccgcc actaaaactt tcttgaaaat cccaaatatt ttattaagta ttaaagcaag
     3421 agactagccc ttgcgaagtt atattatttt acagcgtttt tgatttctaa aatcatagtt
     3481 tttaaagact ctagtccatt tccacttgct aaataccagt attctggatc aagatagatg
     3541 atttttttgt tttgtgctgc tttggtttta gcgacaagcg cattatcgag tatgccttga
     3601 gcccgttctt tgttgcctac aatgatattt ctatcaataa caaaaatata atcaggattt
     3661 ttttctaata taaattcaga attgatactt ttaccgtgag tgcctacttt tatattctca
     3721 tctaccgcgt taatccctaa aacgtcgtga ataatcccaa agcgagattg agggccaaag
     3781 gctgaaattt tgttagaatt tgtaagaata ataagagctt ttttatcttc atcaactatg
     3841 cttttggctt tttcaatttc atttttaata tctgaaattt tttccaaagc ttctttttct
     3901 aaaccataaa gttttgcaac gcttaagaca ttgttttcaa aagagcttaa aaaatttgca
     3961 ttatcaagac ctacaaataa agttggagct atttctttta atttgtcata aaatttactt
     4021 tggcgtccag aaatgatgat aagatcaggt tttaaagcat taatggcttc aaaatcaact
     4081 tgttgtactc cacctacact aggtttgttt ttaaattgtt gtaggtattt tggtaaattt
     4141 ttagcaggaa cgcccgcgac tttatcgttt aattttaaag catcaaaagt atctaaaatt
     4201 ccaagatcta agatcactac cttagaagga tttttaggga ttttattttc tcctaggcta
     4261 tccttcacta aaaaactatc accctcatca ctcatgctaa taggcaaaac tttcatcgta
     4321 gcagtgttgg tttttgttgt agaacttgcg ttgttttcat ttgaatttga attacaagct
     4381 gttaagatta gacttaaaaa aaatgcaaaa aatgcaaaaa ctaaagattt tttcatattt
     4441 tctccttttt aaaaataaat acaaattttc ttaccatcaa tttgacttac aggtatatcc
     4501 atatcataaa tttgttttaa attttcttga ttgatgattt catcttttga gccttgtttt
     4561 aaaagcttcc catcttttaa ggctatgatt tcatcagaat aaatcgaagc aaaattaata
     4621 tcatgtaata caacagctat acttttgtta aagtctttga ctaaattttt cattagttgc
     4681 atgatttgta cactatgctt catatcaaga ttgtttaaag gttcatcaaa cattataaat
     4741 tcagtatctt gagcgatgat catggctata aaagctcttt gtttttgtcc gccgcttaat
     4801 gtatctaaaa attcatttct taagttgcta agccccatgt attctaaagc ttcattgatt
     4861 ttgattttat cgtttgcatt aagtcttcct tgagaatgtg gaaaacgccc aaaagcgact
     4921 aattcttcaa cttttaatct taaattgata ttgttttgtt gtttgagaat ggaaattttt
     4981 tgtgctaaga tttgctcttt atagtctttt aatttcattc catcgatata aatttctcca
     5041 ctactaggtt ttattaaacg acttgctaga gctaaaagag tggattttcc agcgccattg
     5101 gctcctatta tagaagtgat tttgccttta tgaaaatcaa ggctaagatc tgaaataatg
     5161 gctttattat cataaaattt ggtgatattt tttagtttaa tcataattta ttacccttta
     5221 atacaagata gataaaatat atcccaccta agaaattaat aactacgctt atagtggcat
     5281 tataatcaaa aactctagag acaaaaaata cccctccaag taaagctaaa atgctaatga
     5341 gtatgcaagc gcttagtaaa atactatgct ttgcagtttt aaatagctca taagtgatat
     5401 ttgccaccaa aagccccaaa aaggttatag gacctacaag tgcagtgcta atagaagtta
     5461 aaatagctat gataatcatc aattgttttg aaattttttg ataatttatc cctaaattta
     5521 tcgctaaatc tttgcctaaa tttaaaggat ctaaaaattt catatagcga aaaatccata
     5581 taaaacttaa aaagctaatg atataagcaa gaattaaaat atcaaaagca atattatcaa
     5641 aactagcaaa cattcttcct tgtattacca tgaattcatc aggatcgatt aatacttcaa
     5701 aaaaagagct taaagtgcta aaaagtgttc caaaaactaa gcctaaaagc attataagat
     5761 aaatacttct atcgctacta aataaaattt tataaagtcc tagtgaaaaa accaccatac
     5821 aaactagagt gattaaaaaa ttgatatcgt ttttataaac acttaaatta gctgcaccaa
     5881 aagaaaagat aagagcactt tgaagtaaca tatataaaga atctaatcct atgatagcag
     5941 gggttagaat tttgttgttg cataaagttt gaaaaatcac tgttgaaaca gcgatgcaaa
     6001 tagctactat aataatagct gcaatttgta aaaaacgact ttttaaggca tactcatcaa
     6061 agccatttaa acccacaagt ataaaaatcc ctatcatacc aagtgttaaa aagctcaaaa
     6121 tcagcatttt tttacgcata aactttcctt tttagcaaaa gaaagataaa gattaaagat
     6181 cctaaaacac ctgtagtgat acttaaaggc atttcaaaag gaaagatgac aagtcttgaa
     6241 atgatatcgc aaacaagtaa aaacaaagct ccacaaagtg ctatatagat aagatttttt
     6301 ctaagattat cacctagata aagagctact aaatttggga taattagccc taaaaaaggg
     6361 ataatcccaa cgcttacaat cactaaacta gtgataatgc ttacaatcat caagcctaaa
     6421 aataatatac cattataaga aattccaaga tttaaagcta catcttcgcc catgccaact
     6481 atggtaattt tatgagctaa aaaataagca agtataaaaa gtggtaaaga aatgtagagc
     6541 aattcataat ttccctgcat aacatttgcc atactgcctt gtagccaacc ttggatattt
     6601 tgtatataat ttaaagcata ggcaaaaaaa gtggttatag cactaataat acctccaaac
     6661 atcaagccta tcaaaggtac aaaaatcaca tctttgagtt tgatttttct taaaatttgg
     6721 ataaatataa aagaacccaa aagtgcaaat atagaagcaa tgatagcttg agtgaaaaaa
     6781 gacgctccag caaaaaatat taaagaaata agtatgccaa atttagcaca atccatggtc
     6841 cctgctgtag ttggggaaac gaatttattt tgcgtgagtt gttgcatgat aagcccacat
     6901 atactaagac tcattcctgt gagtaaaatt gctataagtc taggaattct tgtgagagtt
     6961 atgatttcta gttgagtgga gttaagatta agaatatctt ttacattgat actgataact
     7021 cctataaata aacttatcat tccaaaaaat aaaagtaaag ctataagcac ttttaaactc
     7081 aatatatgct taaaaaacaa atctttcctt atagtaataa taattatcaa aaatgaaatt
     7141 gtaatgaaat ttgttttaag aaatgataaa actacaaagg atattttagt aagaaatcaa
     7201 aaatccagtg gaaagtcttt gcaagtgttt gttatagtct ataaggcttt ctccatagcc
     7261 attaaagtat tgtaaatacc aataaattcc gttattaaaa atatcatatc ctagatcaac
     7321 ctgtatagca cctttgttat cgtggaattt aagattattt cttagcataa gattgataaa
     7381 ataatcatcg cccaaatacg ctaaattcac atcaaaaatt cccatataat gcaagatagc
     7441 aggattatca tcatcttttt tgctttcagg aattctatac caaaggcgtg gaacaaataa
     7501 aaatttatta tataaaatag ccgtagatac ataaattcta ttccatgagc gagattgtaa
     7561 attctcatct cccttgccat tgctttcatg caatatacct acgcgtagat tgttaaaaaa
     7621 ttcataatct ttaagataca aaggaaaatc tataaaaaat tctggttgat agttggtttc
     7681 tctaaaagga gaagaatgct cataaatttg ccaccaagaa gtttgagtat aggctatata
     7741 atatttttca tctagcccta gtaaattttc aaaaagtctt tttttaacac taagttggaa
     7801 tttcgcctca ctcttattat tatttactcc taaagaatta aaactataag caaaaggtaa
     7861 aaaataattc atcttataag agctaatgcc aaggggatta aagctttcat tttcaccaag
     7921 ataattagcc aaagctaagc gagaaaagtc ttgtttttct tcttttttta tagtgataga
     7981 attttgcgtt tgtgttgctt tgcttgagtt attttgttct tgagaaatca aaacagatga
     8041 attttttaaa gcgagttttt tgtaaatttc catagctttt ttataatcgc cttgtttttc
     8101 atactctaaa gcttgttgta aatcactagc ccatataaaa acgcataagc ttaaaaataa
     8161 agcaattttt ctcattttaa ctcgctttta aatttttcat attcttcata aaaattaaga
     8221 tttaaaaaag catcttcatc ttcaaattct acaaatttgg ttttaatctc agaaaataaa
     8281 agtcctattt tttgttcatt tttttctaag aaatttttac aagtttgagc taaagagctg
     8341 tgataaaagc cacataaggg atgtgtatgt aaaggggttt tggctatgat tattttatag
     8401 ttttgttcta aaaaaggaag catttttaaa agctcatttt cacctacttt aggactatct
     8461 acacttaaaa caaaaacaaa ttcattttta aaatttgaaa gtatagagta aagcg
//
LOCUS       DAEBKH010000071         8130 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.071, whole genome shotgun sequence.
ACCESSION   DAEBKH010000071 DAEBKH010000000
VERSION     DAEBKH010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8130
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.071"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..224)
                     /locus_tag="KIL20_001073"
     CDS             complement(<1..224)
                     /locus_tag="KIL20_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721105.1"
                     /translation="MEHKKALFCIFAIIHLFFWIIFSSLNHFKLDTFLSYEIAFFSVL
                     LIIFASYLNYKKVIIKKSKNYEKNFNFISSL"
     gene            complement(224..553)
                     /locus_tag="KIL20_001074"
     CDS             complement(224..553)
                     /locus_tag="KIL20_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HBD2721106.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            complement(550..1824)
                     /gene="hemL"
                     /locus_tag="KIL20_001075"
     CDS             complement(550..1824)
                     /gene="hemL"
                     /locus_tag="KIL20_001075"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HBD2721107.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQACHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            complement(1821..2168)
                     /locus_tag="KIL20_001076"
     CDS             complement(1821..2168)
                     /locus_tag="KIL20_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721108.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGA
                     DGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            2248..3096
                     /gene="folD"
                     /locus_tag="KIL20_001077"
     CDS             2248..3096
                     /gene="folD"
                     /locus_tag="KIL20_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HBD2721109.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            3106..3954
                     /gene="lepB"
                     /locus_tag="KIL20_001078"
     CDS             3106..3954
                     /gene="lepB"
                     /locus_tag="KIL20_001078"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HBD2721110.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGPQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDEFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPTYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(3976..5136)
                     /locus_tag="KIL20_001079"
     CDS             complement(3976..5136)
                     /locus_tag="KIL20_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HBD2721111.1"
                     /translation="MKNIFETLKDLEDQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKAPKQYNAYRYKGEELKKGEILLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNTNALSLLTMLQNTSYLGIIKDNF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GKNFVLILPGNPMAAYLSCFIFAKKIIALLSGNLDNPLKFHATMGMDLKLKSGRNNLI
                     LGNLEKDIFTPFNENKFGSGMILPLIKSEFLLISEENTSELKKGDEITLLKI"
     gene            complement(5133..6389)
                     /gene="murA"
                     /locus_tag="KIL20_001080"
     CDS             complement(5133..6389)
                     /gene="murA"
                     /locus_tag="KIL20_001080"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HBD2721112.1"
                     /translation="MTYLEIEGTNHLSGNVTISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGTD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLI
                     AEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKGLGAKITRLEE"
     gene            complement(6455..6883)
                     /locus_tag="KIL20_001081"
     CDS             complement(6455..6883)
                     /locus_tag="KIL20_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721113.1"
                     /translation="MQINNSLNSLSQYVKVNSNEENQNSKNQEQNALAQDPAVEVNIS
                     KEAKEKSNTSNQNNSQAPAQALNAQNNTQQDSSSDSEDKLTELTQKLAEIQAKIVELT
                     AKMSKANEDQIKSIESQIATLNAQASTIQAQIQELQSQQA"
     gene            6978..7850
                     /locus_tag="KIL20_001082"
     CDS             6978..7850
                     /locus_tag="KIL20_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HBD2721114.1"
                     /translation="MGVFLVLLGGIFWAISGVLAEYLFKNNYSVDWVCFYRLLSTGLI
                     LIFLSFKAQKILVFTNLKESLSICMFGFFGLLLTQFGYFKAIYYTDAGTATMIQYCAP
                     LIIMLYLCFKNKKFPKLIEIFALILIIFALFLLATKGDIEAVVLNYWGIFWAVIGAFG
                     VAFYSLSAREVILKYGLFWIMGWASLFASFVFLLILQFDKGLIHYAFNLKAFFSMGGI
                     VFIGTIGAFCLYLKGVEYIGALRASMIASIEPVAAALMSFLFLKTRYSLLDIFAFVLI
                     ILSVILNAKKTKAS"
     gene            complement(7837..>8130)
                     /locus_tag="KIL20_001083"
     CDS             complement(7837..>8130)
                     /locus_tag="KIL20_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HBD2721115.1"
                     /translation="FGGRVSKMQNPMHGKISKLYFKKDPIFKGIKKEIEICLYHSLHI
                     SSMPKKCKILAHNSENIIMAIKHKKYPIYGLQFHPEAVLTQKGKKILKNFMKL"
BASE COUNT         2536 a         1218 c         1328 g         3048 t
ORIGIN      
        1 agcgatgaaa tgaaattaaa atttttttca taattttttg atttttttat aatgactttt
       61 ttataattta aataagaagc aaaaataatc aataaaacac taaaaaaagc tatttcatag
      121 cttaaaaatg tatctaattt aaaatgattt aacgatgaaa atatgatcca aaaaaataaa
      181 tgaataatgg caaaaataca aaatagagct tttttatgtt ccattatttg ttcttttctt
      241 tttgaatttt ttctttgatc aactcatctc tttctttaaa ttcttcatag ctttttactt
      301 gaactttata agctttgtaa acattaagta tggcagcact gatcccccaa aaaactccaa
      361 gccaaaaaag ccaaggataa ggagtaaatt ttttaagtaa atatcctatt cccacaccta
      421 taaatacagc aacaaccata gagatgccaa gacttaaacc atccgcagct tcaagagttt
      481 tgcgaatgat tttttgtctt ttgctgttgg aattttctaa gtgatttttt tcttctttta
      541 aaatattact catattcttt taaagctttc cctaacagcc tctagtgttg tatctataat
      601 tttatcatcc atttttgaac atataaagcc tgtttcaaat tgagaaggtg ctaaataaat
      661 tccattttca agcatatttt tgtgaaattt tgaaaataat gctagatcag attttaatgc
      721 atcttggtag tttgatacag gatctttggt gaaaaagtat ccaaacatag aacctacatg
      781 acaagcttgc agcggaagtc ctttttcatc tgctaatttt ttcattcctt gggtaagttt
      841 ttttgctaat tttccaagtt tgtcataaag cttggttttc tttttggctt ttgtaagact
      901 tgctatacct gcagccattg ccaaaggatt tccacttaaa gttcctgctt gataaactcc
      961 acccaaagga cttaaaatat ccataatttc agctctagaa gcaaatgctg ctgcaggtag
     1021 accgcctcct attaccttac caaaagtaat tatatctgct tggatatgat tgattccata
     1081 ggaaccaagg taagatgctc tatatccact cattacctca tcaaaaatca gcagagtttg
     1141 attgttttta cagatcttag caagttcttc taaaaaatct tgtttagctg gaactaaccc
     1201 catatttcca gcaataggct caatgataac acatgcaata tctttatttt tttcaaaaag
     1261 ctctttaacg ctatttatat cattatattt agctactaaa gtgtgtttag ctacatcttc
     1321 taaaacaccc aaagaactag gagagttaaa agtagcagca ccacttcctg cactcactaa
     1381 taatgaatca gaatgcccgt gataacatcc ttcaaatttt aaaattttgt cttttttagt
     1441 aaaaccacgg gcaagacgaa tagcactcat ggttgcttct gttccactgc ttacaaagcg
     1501 gatcttttct aaatgaggaa aatcagataa aacaagcttg gcaagttcag tttctaataa
     1561 agttggagct ccaaaacttg aacctttatg aagtgctttt tgacaagctt tttgtatatc
     1621 tttatcgcaa tgtccaaaaa gtaaaggccc ccagctttga acatagtcta tataagaatt
     1681 tccatctata tcgaaaatat aagcaccttt tccatgagaa ataaattttg gctcactttg
     1741 aacatttgca aaagcacgaa ctggagaatt tacaccgcct gcgatgaatt tacacgcttc
     1801 tttaaaagct tttttgtttg tcatttttct tccttgctaa attgcttgat gtaattatat
     1861 aaagttacaa tttcatcatt tgttaaagag taatttggca tgattgattt tgcgtcttta
     1921 ctctgattaa gagaattttt aaaattctca aaactaagat tttgtatact tggaacttta
     1981 taagctgttt taataccatt tttcatataa tatcctaaaa tttgttcgct tccatctgct
     2041 ccatgacatt ctttacaact aatgcccctt ggattttcat aaagcatttt agagtattct
     2101 ttaagagtga taaaatcagc accaaaaaga ctgatactaa ataaaaaaaa cattaaaaca
     2161 attttcaaag tttcaccttg ttaatgaagt tttaatatga tacaattttt actttaaaaa
     2221 agtgattaaa tttatagaag gaaaataatg actttgcttg atggtaaagc tttaagcgca
     2281 aaaatcaaag aagaattaaa agaaaaaaat caatttttga aaagcaaagg gattgaaagc
     2341 tgtttagctg ttatcttagt tggagataat cctgcaagtc aaacttatgt aaaatctaag
     2401 gctaaagcct gtgaagaatg tggaattaaa tctttagttt atcatcttaa tgaaaatact
     2461 acacaaaatg aacttttggc attgattaat accttaaatc acgatgatag tgttcatgga
     2521 attttggttc agcttccctt acctgatcat atttgtaaag atttaatact tgaaagtatt
     2581 ataagtagta aagatgttga tggctttcat cctattaatg taggatattt aaatttaggc
     2641 ttagaaagtg ggtttttgcc ttgtactcca cttggagtta tgaagctttt gaaggcttat
     2701 gaaattgatt tagaaggaaa agacgctgtt attataggtg cttcaaatat agtaggtcgt
     2761 cctatggcta ctatgctttt aaacgctgga gctacagtaa gcgtttgtca tattaaaacc
     2821 aaagatttga gcctttatac taggcaagct gatttgatta tagtagcagc aggttgtgtg
     2881 aacttacttc gatcggatat ggtaaaagaa ggagtgattg ttgttgatgt tggaatcaat
     2941 cgtcttgaaa gtggaaagat agttggagac gtggattttg aagaggtatc taaaaaatct
     3001 agttatataa ctcctgttcc aggtggagta ggtcctatga ctatagccat gcttttagaa
     3061 aacacagtta aatctgctaa aaatagactt aattagggaa aatctatgga aattttaaag
     3121 aaattatata aattttcaca gtcttggact ggaactgtag ttattgttct tttggtgatt
     3181 tttttcttta tacaagcttt tgttattcct tctggttcta tgaaaaacac cttgttggta
     3241 ggggattttt tatttgttaa aaaatttagc tatggtatcc caactcctca tattccttgg
     3301 ttggaaattc ctgttttgcc tgattttaat aaagatgggc atttgataaa agcacaaggg
     3361 ccacaaagag gagatatagt tgtttttaga aatcctagaa atgaaaaaga acactttgta
     3421 aagcgttgtg taggcacagg aggagatagg atagtttatg caaataaaac actttatgta
     3481 agaatgcatg agggtgatga atttatgaaa gaacattatc cgaatgatct tgttactctt
     3541 ggagggcaaa tttatgtaaa agaaccttat aaacaaaaag gtattcatta tgatccaaaa
     3601 aaagatatag aaagcgatat tttacgcttt cttagcatag gtgattttgc catgtctcca
     3661 acttatatta aagaacttgg aaatcatata ggttttagcg gcggaaatgc ttatgttttt
     3721 gatgtacctg aaaatgagta tttcatgatg ggtgataatc gcgattattc ttatgatagt
     3781 cgtttttggg gttctgttcc ttataggttg atagtaggta aaccttggtt tgtatatttc
     3841 tcttgggata aagataaaaa tgttcgctgg gaaaggatag ggcgttttgt tgacaccttg
     3901 gaaaatgatg aacaatatat ccatgatcat gatgatgagg ataaattaag ctaatgtttg
     3961 tgaaaaacac aaacattata tttttaaaag cgtgatttca tcaccttttt ttaattcact
     4021 tgtattttct tcgcttataa gtaaaaactc acttttaata agtggaagta tcataccaga
     4081 tccaaattta ttttcattaa atggtgtaaa aatatctttt tctaaatttc ctaaaatgag
     4141 attgtttctt ccacttttaa gctttaaatc catacccatt gtagcatgaa attttaaagg
     4201 attgtctagg tttccactta ataaagcaat aattttttta gcaaaaataa aacaagaaag
     4261 ataagctgcc ataggatttc ctggtaaaat caatacgaaa tttttaccct ttctataaag
     4321 tttagtaggt cttgcagggc gtgcttttag tcctttaaaa agcggagtaa agcctaattc
     4381 atctaaagct ttttccataa aatcagcctc gccaacgctt gcacctcctg aagtgattaa
     4441 aagatcaaaa tttgtatttt ctaaagcttc tttagtgctt ttaaaattat ctttgatgat
     4501 gcccaaataa gaagtatttt gaagcatggt tagtaaagac aaagcattgg tattataaat
     4561 actttcttca tcgcattctt gccaaggttc ttttagctca tttccacttg aaaaaatacc
     4621 tatacgaatt tttcttatga cttctatttt ataaagccct tgagaagcaa gcagggcgat
     4681 atgtttatca ttaagtttgg tgcctttttg aagtaaaatt tcaccttttt ttaattcttc
     4741 gcctttatag cgataggcat tgtattgttt aggagctttt ttaatgatga gtttattttc
     4801 ttctatatac tcatcttcta acattaagat agtatcagca tttttgggca ttttagcccc
     4861 tgtcatgatt ttatagcatt catttttagc aactgtataa aaatttttat ctcctgcaaa
     4921 aatagtccct ttaatctcca aagcttcatt gatatcagta taattaaaag catagccatc
     4981 aagagcagca ttgtcaaaac tgggtagatt ttttctagcg tataaatctt tagctaaaat
     5041 tctatctttt gctttttcaa ggctaataag ttcactttca tctaagcatg aaatttgatc
     5101 ttctaagtct tttaaggttt caaagatatt tttcattctt caagccttgt gattttagcc
     5161 cctaagcctt taaatttttc ttctaaattt tcataacccc tatcaagatg ataaattcta
     5221 tggactttgc ttgtgccttt agctgcaaga gctgctaaga taagggctga agaagcacgc
     5281 aaatctgtag ccatgacatc agcagcgtta agttcttttc cgcctactat agtagcaata
     5341 tgaccgttga gtttaatatc cgcacccatt cttaaaagtt cacttacatg catgaaacga
     5401 ttttcaaata gtctttcatc gataatacta gttccattag cttttaaggc taatgccata
     5461 aactgcgctt gcatatcggt tggaaagcct ggatattcac ttgtcatgat ttctacaggt
     5521 ttaatttctt tagcaggaag tagggtgata ctatcttctg caatcaaagt ttcaaaaccc
     5581 atttgatgaa gttttgctaa aactgcacta agatgagtgg cattaacttt atctaaagta
     5641 attttagaat ttgtaatagc cccagcacaa agataagttc ctgcctcaat tctatcaggt
     5701 ataacgctaa attctttaaa ttctaaaagt tctccatcag tgccataaat ttcaagttca
     5761 tctgtaccta tgcctttaat ttcaagtcct gcgtctttta aaacttcgca aagttgaact
     5821 acttcgggtt cttttgcaac atttaagagt ttggttttac ctttagctag agctgctgcc
     5881 atgatgatgt tttcactacc tgtaaccgtg attttatcaa aaagaatttc attgcctttt
     5941 aaatttccac tagctacgac atagccttgt ttgatttgta tatttgcccc cattttttcc
     6001 aaggctaaaa gatgtaaatc aataggtctt tgtcctatgg cacatccacc aggcaaagat
     6061 acttcacaat gcccaaaacg agcaagtaaa ggccctagag taagtatgga agcacgcatt
     6121 ttacgcacaa tgtcatactt ggctatggtt tgattaagag tgtttgtgtt taataaagca
     6181 ctattgtttt gaaaattgac cttagcgcct aaattttcta gcaaagatat aagagttttt
     6241 atatcagcaa cattaggaac attgttgatt tttacttcat ttttagcaag tatacttgaa
     6301 acgatcaagg gtagggcagc attttttgct ccgcttattg taacatttcc gcttagatga
     6361 tttgtgcctt cgatttctag ataagtcata tttttccttg aaaaagttta aaaatgcatc
     6421 attatagcat tcttaaactt ttgaaaaaat ataatcaagc ttgttggctt tggagttctt
     6481 gaatttgagc ttgaatagtt gaagcttggg catttaatgt tgctatttga ctttcaatac
     6541 ttttgatttg atcctcatta gctttagaca ttttcgcagt tagttcaaca atttttgctt
     6601 gaatttctgc aagcttttgt gttaattctg taagtttatc ttcactatcg ctgctactat
     6661 cttgttgtgt gttgttttgt gcgtttaaag cttgagctgg agcttgagaa ttgttttgat
     6721 tagaagtatt tgatttttct ttggcttctt tgctgatatt tacctctaca gctggatctt
     6781 gcgctaaagc gttttgttct tgatttttag agttttgatt ttcttcgttt gagttgactt
     6841 taacatattg acttaagcta tttaaggaat tgttaatttg catattttct ccttaattta
     6901 taatatatat tacactaaat cgacattatt taaaaaaaat atactataat ttaaaataat
     6961 ttttattaag gtttgcaatg ggcgtatttt tagttctttt gggaggtatt ttttgggcta
     7021 ttagcggtgt tttagctgaa taccttttta aaaataatta tagcgtagat tgggtttgtt
     7081 tttataggct tttatctaca gggttgattt tgattttttt aagttttaaa gctcaaaaga
     7141 ttttagtttt tacaaattta aaagaaagct taagtatttg tatgtttgga ttttttgggc
     7201 ttttgctaac acaatttggt tattttaagg ctatttatta taccgatgct ggaactgcaa
     7261 ctatgataca atattgtgca cctttaatta taatgcttta tttgtgcttt aaaaataaaa
     7321 aatttcctaa attgatagaa atttttgctt tgattttgat tatttttgct ttgtttttgc
     7381 ttgcaactaa aggagatatt gaagcggtgg ttttaaatta ttggggtatt ttttgggctg
     7441 ttataggagc ttttggagtt gctttttatt ctttaagtgc tagagaagtg atattaaaat
     7501 atggtctttt ttggataatg ggttgggcga gtctttttgc ttcttttgta tttttattaa
     7561 tcttgcaatt tgataagggt ttaattcact atgcttttaa cttaaaagca tttttttcta
     7621 tgggcgggat tgtctttatc ggaactatag gggctttttg tttgtattta aaaggagtgg
     7681 aatatatagg cgctctaaga gctagtatga ttgcttccat agaacctgta gcagctgctt
     7741 taatgagttt tttattttta aaaacccgtt atagcttgct tgatattttt gcttttgttt
     7801 tgattatatt gagtgttatt ttaaatgcaa aaaagactaa agcttcataa agtttttaag
     7861 tatttttttg cctttttgag ttaaaaccgc ttcagggtga aattgcaatc cataaatagg
     7921 atatttttta tgtttaattg ccataataat attttctgaa ttatgagcta aaattttgca
     7981 ttttttaggc atagaactaa tgtgtaaaga atgatataag caaatttcaa tttctttttt
     8041 aataccctta aaaataggat cttttttaaa ataaagttta gaaattttgc catgcatggg
     8101 attttgcatt ttagaaaccc taccgccaaa
//
LOCUS       DAEBKH010000072         8011 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.072, whole genome shotgun sequence.
ACCESSION   DAEBKH010000072 DAEBKH010000000
VERSION     DAEBKH010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8011)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8011)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8011
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.072"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            67..2429
                     /locus_tag="KIL20_001084"
                     /pseudo
     CDS             67..2429
                     /locus_tag="KIL20_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866870.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
     gene            2440..3096
                     /gene="dmsB"
                     /locus_tag="KIL20_001085"
     CDS             2440..3096
                     /gene="dmsB"
                     /locus_tag="KIL20_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HBD2721116.1"
                     /translation="MKLEENSQFGFMLDQSKCVGCRTCSLSCKDYKNMPVGVNFRRVF
                     ETEGGNWTCKEDGSFEQSVFAYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDS
                     MCIGCKACAMACPYGAPQFNHESGHMSKCDGCYERLKEGKNPICVDSCPFRALKAGDI
                     TKLREEHGNLASITPLPDASITHPNLCIVPEKHSLPSGNKSAIFHLPQNYQGVKNDII
                     "
     gene            3083..3949
                     /locus_tag="KIL20_001086"
     CDS             3083..3949
                     /locus_tag="KIL20_001086"
                     /inference="COORDINATES: protein motif:HMM:NF016838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit"
                     /protein_id="HBD2721117.1"
                     /translation="MTSFNHILSEMPLVLFTILAQAVIGLSLVYAPAFINGYKNYANL
                     KSFGLALGIAMMVAFIPSFFHLNDITHIFNVLNRMGVFYANNEWHIGWMNNEILFVSL
                     VCALGFLLYLKTSNWVFYLTLICGILGLFFMSGAYGSMQESVPTWDFKITLLYFFASA
                     IFLGAIVYYCFFENSEHERKMSFFTGLIGIGLLSTAIVLQTLHVGQTWIMGLVNPFEL
                     LGGTYDWFISLSFAFLGLGIVTWYLHNYLHEKFKSKFFAYFALLCAFLGVFTTRMLFY
                     GLISTQIMLGHS"
     gene            3949..4506
                     /locus_tag="KIL20_001087"
     CDS             3949..4506
                     /locus_tag="KIL20_001087"
                     /inference="COORDINATES: protein motif:HMM:NF014651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HBD2721118.1"
                     /translation="MQKLAIDIFINFLQNPPNHFLLEKLKKEEFWQNWFLKNNSKLQC
                     TALKLLSSSNEDDKLIASDFTSLFLSDVDYVKAPPFASFYLDENKEIYSDNSDKVKQI
                     FAQNNFFSFFNEEPADSLINELLFISFLIKKQDDIILQKFLKEEFFTWFNMWSFDVIN
                     KAKTHFYKALTMLMQDFFNQLNTKF"
     gene            4573..4995
                     /gene="cgb"
                     /locus_tag="KIL20_001088"
     CDS             4573..4995
                     /gene="cgb"
                     /locus_tag="KIL20_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HBD2721119.1"
                     /translation="MTKEQIQIIKDCVPILQKNGVDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRNFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAEFYIDIEKKLYDK"
     gene            complement(5015..6646)
                     /locus_tag="KIL20_001089"
     CDS             complement(5015..6646)
                     /locus_tag="KIL20_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HBD2721120.1"
                     /translation="MPFIMELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVTLLALVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNVDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKNKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(6696..7991)
                     /locus_tag="KIL20_001090"
     CDS             complement(6696..7991)
                     /locus_tag="KIL20_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD2721121.1"
                     /translation="MRKLKFGTKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREHCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLKDLFKEKDIVKNLFSSMMMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGAFMGYLVDKFGLFKICIFFSLTFVFFSFLYFYALYELKNLV
                     LVCILYSIVCFLGGINVFAPILMSEVFRAKIRFSGISFSYNIAYAISGGITPQLVFWL
                     NTLASKNENPFLYGMSIYMIFLALLAICAVFIVKDKIKF"
BASE COUNT         2993 a         1231 c         1228 g         2559 t
ORIGIN      
        1 ttgaataaaa ttattatttg tattataatc gtaataattt ttgtcatata aatgtaagga
       61 gataacatgg aacaaaatcg tagagatttt ttaaaatgga gttctttgtt tggcagctta
      121 accttaagtc cgataaattt aagcgcaaat ttattaaaaa ctccaccatt aatcagcaaa
      181 tgggctggat gtaatgtaaa ttgtggaaca aaatgtcctg taaaagtgca tactcaagat
      241 ggaattatta aatatgtcag tactgataat gaaggtgatg atagctttga taatcgtcaa
      301 gcaagagcct gtattagagg tagaagctca agatataaag tttacaacgc aaatcgccta
      361 aaaagaccat taaaaagagt gggaaaaagg ggtgaaggta aatttatgcc tatttcttgg
      421 gaacaagctt ttgatgaaat ttctgccaaa atgcaagaaa ttaaagaaaa atacggcaat
      481 gaagcctttt atataaatta tgcaacagga acaacaggaa caataatcaa tcgctgtaca
      541 caaggtccat gggctagact tttaagtctt tatggtggtt attaaattat cataattctt
      601 attctacggc tcaaatttca aacgcaatga attttttcta tggtggatct cctgctagcg
      661 atatatacac tttacgctct gcaaaattag ctatattttt tggagcaaat catgttgaaa
      721 ctagaatggg aggtggtgga gtgggctatg cttatcaaaa agccttagaa gaaagtggat
      781 gtaaaataat tcacattgac ccaagatata atgattctat gatagggcat tgtgatgagt
      841 ggatacctat agcaccagga accgatgcag ctttgattgc tgcactaact tatgtgatga
      901 taaaagaaga tttacttgat agaacttttc ttgataaata caccataggc tttagcgaaa
      961 atactctgcc acaagatgca gccaaaaact caagctatga aagctatgtt ttaggactaa
     1021 acgatggagt agaaaaaact cctgattggg ctagcaagat tacaaaaatt ccagcacgcc
     1081 gcatagttca acttgcaaga gaaattgcca ccataaagcc ttgttttata gaacaaggtt
     1141 ggggagtgca aagacattca aatggagaac aaaatgcaag ggcgatagca actctagctt
     1201 gtattacagg aaatattggc atagaaggga caaatacagg atgtcgaaca gggtcaagta
     1261 aaacatatga tataatgggt atgcctttta aaaatccaat aaaagattct attccttgtt
     1321 ttttatttac agacgctatt tatcgcggaa aagaaatgac agatattagt gatggggtgc
     1381 gtggtacaac acaattaaaa caaaatatca aatttatttt caatacagca ggaaattgtc
     1441 ttacaaatca gcacagcacc attaaagaag tgcatgatat tttaagcgat gagaatttat
     1501 gtgagtgtat agtagatgtt aatgtaacta gaactccttc aaataactac gcagattata
     1561 tcttacctga tgcaactatg ctagagcaag aagattttat aagacctagc gcaggatatt
     1621 atagcaataa accttatatt atttattgtc aaaaagctat cgagccagtt ggtgaagcaa
     1681 aacctattta tgaaatgtgt cttgaacttg ctaaaagact tggcatagaa aaagaattta
     1741 gcgaaggaag aacacaaaaa gattggctaa aataccttta tgaagaaagt atgaaaaaaa
     1801 atccactttt gcctagtttt gaagaaatgt gtgaaaaagg acttgtaaaa tttgagcctg
     1861 taaaacctgt agtggcatta caaagtttta taaaagatcc tatcaataat cctttaaaaa
     1921 ctcctagcgg aaagatagaa atttatagca caaaactcgc acaaatgcaa aaaacttgga
     1981 aattaaaaga aggacaacaa atagtgccta ttcctgtttt tgaaagccaa agagaaggga
     2041 ttttggattc attaaaacaa aagtatcctt tgcaattttt tggctatcac tacaaaggta
     2101 gaacgcattc tagcttttgg gaaattccac aaattagaga agctaatccg caagaaattt
     2161 ggataaatac catagatgca gagcaaagaa gtatcaaaac gggcgatgtg gtgcaagtaa
     2221 gaaatgactt aggaatcata caaggcatag caaaagttac tccaaaaatc ataccaggtt
     2281 gtgcagtaac cccacaaggt gcatgggcaa aatatgaaaa tggtatcgat gttggaactt
     2341 gtgtgaattc tttggcaagt atagtgccaa ctgctatttc taaaggaaat ggacaacatt
     2401 ctattttagt tgaaattgca aaagtttaag gagaaaaaga tgaaattaga agaaaattca
     2461 caatttggtt ttatgctaga tcaaagcaaa tgcgtaggct gtaggacttg ctcactttct
     2521 tgcaaggatt ataaaaacat gcctgtgggg gttaattttc gccgtgtgtt tgagactgaa
     2581 gggggaaatt ggacctgtaa agaagatgga agttttgagc aaagtgtttt tgcttactac
     2641 acctctattt cttgcaatca ttgttctaat ccatcttgcc ttaaagcttg tccaaccggt
     2701 gcaacaatga aaataaaatg gggaatagta gcaatcgatg atagtatgtg tataggctgc
     2761 aaagcttgtg ctatggcatg tccttatggc gcacctcaat ttaaccatga aagtggtcat
     2821 atgagcaaat gcgatgggtg ttatgagaga ttaaaagaag gtaaaaatcc aatttgcgtg
     2881 gactcttgtc cttttagagc attaaaagca ggcgatataa caaaactgag agaagaacat
     2941 ggaaatttag cctctatcac acctttacct gatgcttcta tcacgcatcc aaatttatgt
     3001 atagtgcctg aaaaacatag tttgccttca ggtaataaaa gtgcgatttt tcatctacct
     3061 caaaactacc aaggagttaa aaatgacatc atttaatcac attttaagcg aaatgccttt
     3121 ggtattattt actattttag cacaagctgt aattggactt agtttggttt atgcacctgc
     3181 atttataaat ggttacaaaa attatgcaaa tttaaagtct tttggattag ccttaggaat
     3241 tgcaatgatg gttgctttta tcccttcatt ttttcattta aatgatatta cacacatttt
     3301 taatgtatta aatagaatgg gtgtttttta tgcaaacaat gagtggcata taggctggat
     3361 gaataatgaa attttatttg tatctcttgt atgtgctttg ggctttttgc tttatctaaa
     3421 aacttcaaat tgggtgtttt atcttacgct aatatgtgga attttaggac ttttctttat
     3481 gagtggagct tatggctcca tgcaagaaag cgtacctact tgggatttta agatcacttt
     3541 gctttatttt tttgctagtg ctatattttt aggtgctatt gtttattatt gtttttttga
     3601 aaatagcgaa catgaaagaa aaatgtcatt ttttacagga cttataggca tagggctttt
     3661 aagcactgct atagttttac aaaccctaca tgtaggacaa acttggatta tggggcttgt
     3721 aaatcctttt gaacttttag gtggaaccta tgattggttt atatcgcttt cttttgcatt
     3781 cttaggactt gggattgtta cttggtattt gcataattat ttacatgaaa aatttaaaag
     3841 taaatttttt gcttattttg ccctactttg tgcattttta ggggtgttta ccactagaat
     3901 gctattttat ggacttataa gtactcaaat catgttggga cattcttaat gcaaaaattg
     3961 gcaatagata tatttatcaa ttttttgcaa aatccaccta atcatttttt gctagaaaaa
     4021 cttaaaaaag aagaattctg gcaaaattgg tttttaaaaa ataatagcaa attacaatgc
     4081 accgctttaa agcttttatc atcttcaaac gaagatgata aattaatagc aagtgatttt
     4141 acatctttgt ttttaagcga tgttgattat gtaaaagcac cgccttttgc ttctttttat
     4201 cttgatgaaa ataaagaaat ttattcagat aattctgata aagttaagca aatttttgcg
     4261 caaaataact ttttttcttt ttttaatgaa gaacctgcag atagcttgat aaatgaatta
     4321 ttatttatta gttttttaat caaaaaacaa gatgatataa ttttgcaaaa attcttaaaa
     4381 gaagaatttt ttacttggtt taacatgtgg agttttgatg ttatcaataa agctaaaaca
     4441 catttttata aagcattaac aatgttaatg caagactttt tcaatcaact aaatacaaaa
     4501 ttttaacaca agtcaatttt tttctccttt ttaagatata taatatctct tttacattaa
     4561 aaaggagaaa ttatgacaaa agaacaaata caaatcatca aagattgtgt gcctattttg
     4621 caaaaaaatg gagtagattt aaccaatgag ttttataaaa taatgtttaa tgattatcct
     4681 gaggtaaaac ctatgtttaa tatggaaaaa caaatttcag gagaacaacc aaaagcttta
     4741 gcgatggcga ttttaatggc agctaaaaat atagaaaatt tagaaaatat gagaaacttt
     4801 gttgataaag ttgctataac tcatgttaat ttaggggtta aagaagagca ttatcctata
     4861 gttggagctt gccttttaaa agccattaaa aatcttttaa atcctgatga agccactctt
     4921 aaagcttggg aagttgctta tggaaaaatt gctgaatttt atatcgatat agaaaaaaag
     4981 ctctatgata aataatataa gcccattttg ggctttaatc aaatttttct actaaatttt
     5041 tagctaattc ctttatattc tcacccttta attcgctgat ttcaccattt tgagccaaga
     5101 aaattctatc agcactatca aaatatgcat catcatgtgt gatagcaaag attgttttac
     5161 cttgctcttt tagcaaaggt aaaagttttt tataaaaaaa tcttctaaaa acaggatctt
     5221 gatcagccgc ccattcatca agcactaaaa tatccctttc ttcaagcaag gctataagca
     5281 tagctaaacg ctttttttgc cctgtagaaa gtttggttaa ggtcagttca ttatctttga
     5341 cacttgtttt atttttaagt tctaaaaact ccaaccaaaa agcaattttt tcttcgcttg
     5401 caaaattttc tttatttaag gttttagtaa aaagatgaaa atcgctaaaa acagcagaaa
     5461 taagagatct atactcatct acatttttat catctataag cgtatcatca acataaattc
     5521 cgcctttgct tggcttaaaa agtcctgtca aaagcataca aaaagtggat ttaccacttc
     5581 catttttacc tattaaaaat accaattcac cttttttaag ttctatattt acaggattta
     5641 aatgaaaatt ttcttcataa gcaaattgag tatttctaaa agaaattttt ttccattcac
     5701 tgatataatg tgttttttta aaaccttcta tataatcatc taattccaat tttgcgatct
     5761 tatccaaagc gatttttgcc aaaagcaaag taggaaaaga tcctatcata gatactaaag
     5821 gggttcgtaa aaacaaaata gaaagagcta tagttgtagc atctgcaaca cttgcccatt
     5881 caaattttaa agctaagtaa aactctacac ccactaaagc caaaagagtt acatttgtcc
     5941 agttgtttga gagattgtta aaaagattac ctaaagtact atttttcttt ttcaatcttg
     6001 cattattttc aaattcatct tcataataaa gcttggctct atcacgattg atcaaaagtt
     6061 ctttatgtcc atctagtata ttttggtaat tattttgcaa agcatcatca ttttcccttg
     6121 cctttctaaa atactgatat actttcatca tcaaaaaatt attagtaata aaaataacca
     6181 taatccatac cacacacaaa gcaaaaattt gtggtgaaag ataacataaa taaacactag
     6241 tgcataaaat caatatactt gattgtaaaa aatcaggcaa tcttaaaagc ccaaaagata
     6301 tatttctcac atcacttccc aaagaagcta aaattctagc cttacctact ttagccactc
     6361 ttaacaaagg ggtatctaat atctgcttta ctacacgcct ttgcatttta aaaataaaat
     6421 tttgtccaaa aatactaagt ccaagttcaa ctatggtaga acttataaaa aatatcaaaa
     6481 gcaaaacaat aaaataaaaa ataggaatgt tttgtgcatt tttaagcaaa taatcattga
     6541 taaaaacaag agttaaaact ccaacagcac ttgtaataaa agaaaaaagc aaaaaagaaa
     6601 tcaactttaa tttattttgt ttaagtaatt ccataataaa aggcatttat aaactccaaa
     6661 atataatttt aattataaca ttttaagagt gattatcaaa attttatttt atcttttact
     6721 ataaaaacag cacaaatagc caataacgct aaaaaaatca tatatatact cataccatat
     6781 aaaaatggat tttcattttt actcgcgagt gtattaagcc aaaaaacgag ttgcggagta
     6841 ataccgcctg aaattgcata agcaatatta taagaaaaag aaattcctga aaatcttatt
     6901 ttagctctaa aaacttcact cattaaaata ggtgcaaaca cattaattcc acctaaaaaa
     6961 caaacaatgg aatacaaaat acacaccaaa accaaatttt taagctcata taaagcataa
     7021 aaatataaaa aagaaaaaaa tacaaaagtt aaagaaaaga aaatgcaaat tttaaataaa
     7081 ccaaatttat ctacaagata acccataaaa gccccgccta aagctattcc caaaattcct
     7141 aatatctgta aataacttcc ttcaacccca cttaaattta aaatactagg cataaattta
     7201 ggcattaata aaacaagcac aataacacaa cctgttaaaa cccaagtcat catcattgat
     7261 gaaaataaat tttttacaat atccttttct ttaaataaat ctttaagcgg aaaagaacta
     7321 agcgatgatt cttttttcat ttgtttaaaa acaggagttt cttgcaaaaa tctacgcaaa
     7381 taaatagaaa taatcccaaa aattccacct acaaaaaaag caatacgcca tgcataagca
     7441 gcaatttctt ctatgctaaa aaaagcatta atgattaaaa atactatact tcctaacaaa
     7501 attcctaaag ccatagctga atttaaacag cttaaaaaga aagctttttg tttttcttga
     7561 caatgttctc ttacaaaaac ccaagctcca ggcaattctc cacctatagc tatgccttga
     7621 aaaattctta taagtatcaa taaaacagga gctaaaaacc caagagtttc ataacctgga
     7681 ataaaagcta agacaaaggt aggaagaacc attagtaaaa tacttagcat aaacatattt
     7741 ttacgcccaa atttatctcc aaaatgtgcc ataactatac cacctaaagg acgtgctaaa
     7801 tatccagctg caaatgctcc ataagtattt aataaagccc aaaattcact catatcttta
     7861 ggaaaaaata cattggctat atattcagca aaaaatacaa aaataataaa atcataaaat
     7921 tctaaagttc ctcctagtga agaaagtcct aagatcttaa tttcctttgt tccaaatttt
     7981 aattttctca ttgattaatt accttaaatt t
//
LOCUS       DAEBKH010000073         7939 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.073, whole genome shotgun sequence.
ACCESSION   DAEBKH010000073 DAEBKH010000000
VERSION     DAEBKH010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7939
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.073"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..153
                     /locus_tag="KIL20_001091"
     CDS             <1..153
                     /locus_tag="KIL20_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HBD2721122.1"
                     /translation="IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKA
                     LYKNNT"
     gene            complement(178..3195)
                     /gene="cmeF"
                     /locus_tag="KIL20_001092"
     CDS             complement(178..3195)
                     /gene="cmeF"
                     /locus_tag="KIL20_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HBD2721123.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKVNGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKD
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(3198..3938)
                     /gene="cmeE"
                     /locus_tag="KIL20_001093"
     CDS             complement(3198..3938)
                     /gene="cmeE"
                     /locus_tag="KIL20_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HBD2721124.1"
                     /translation="MKKILFLLLAFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLTLDQESEKIALQNAQNSYQLALVEYENTKSKMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNKAKINIAYYKNIMTKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVKLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            complement(3935..5209)
                     /gene="cmeD"
                     /locus_tag="KIL20_001094"
     CDS             complement(3935..5209)
                     /gene="cmeD"
                     /locus_tag="KIL20_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HBD2721125.1"
                     /translation="MFEKYLKSAMFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLNSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESKEKLSLLDKEQSKNYLALNAITLYFNTLSLEKILLANQQKVAFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSNTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FVNLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEAKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
     gene            5335..7131
                     /gene="lepA"
                     /locus_tag="KIL20_001095"
     CDS             5335..7131
                     /gene="lepA"
                     /locus_tag="KIL20_001095"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HBD2721126.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGNI
                     AKNDEVLVMSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSL
                     ALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGELVKIQNPSEL
                     PPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPL
                     NEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQ
                     SKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
     gene            7208..7852
                     /locus_tag="KIL20_001096"
     CDS             7208..7852
                     /locus_tag="KIL20_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721127.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPD
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDATGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            7849..>7939
                     /locus_tag="KIL20_001097"
     CDS             7849..>7939
                     /locus_tag="KIL20_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HBD2721128.1"
                     /translation="MRCINCGAFALLCFCDLCELELSEFSLNVR"
BASE COUNT         2667 a         1162 c         1282 g         2828 t
ORIGIN      
        1 atcagacaaa aatatttgat tttggtaaaa ctttatcatc ctgattttca tcaaggaaaa
       61 agtgcaatag aaaaagctta cgcaagagaa cagtttgaaa aaatacaaat tgcctatgat
      121 aacttaaaag cactttataa gaataatact taaaaaaaat taaattaatc attttggtta
      181 atttaatttt tctctctcat aaatttttct taatttgcta tctagtttaa aacagaattt
      241 aaaaagtgca ggtactacga gtaaggtaag caaagtcgaa cttataagtc caaagataat
      301 ggctattgcc ataggagaat tagcttcata gcccgcaccc cttgaaagag caagtgggag
      361 catagcaaaa atcatagcaa aagttgtcat caatatagcc cttaagcgcg attttccagc
      421 gattaaaaga gctttatcgg gatctaaacc ttcatggcat tttttattag ctacatctac
      481 gagtaaaata gcatttttcc ccaccatacc aaaaagtaag atgatggcaa taagtacaaa
      541 aagtgaaaaa ttatgccctg tgataaaaag ccctatagaa gctccgccaa aggctaaagg
      601 catggttatc atgatgatta aaggcagaat aaaactttca taaagtgcgg ctaaaacaag
      661 ataaattaaa acaaaagcaa gtgctactgc catagcaaaa ccttgcacgg tttcacctaa
      721 aagattgata aagcctgaaa aagcatagct aagacttgga ttgttattta aaattttatc
      781 catattatct agtaaaagtt tttgcaccgc tcctaaggaa agatcattca ctccagctgt
      841 gattttcaca gagcggtttt tattgtaacg attgatagtt tttaaatctt tactgtatat
      901 aaaatccacc acgcttgaaa gttctaaatt tataccttgg ttgtttttaa tgctaatgcg
      961 ctttaaagct tctatgtctt ttttaaattc tggagcaaaa cttaggataa tatcatcttt
     1021 tgaattgcct ctatccatgc ttcctacgct aagttgcgag aaagaatacc ctaaaacccc
     1081 agcgatatat tgaggattga catctaaaag tttggctttt tctttgttga tgtgtaaggc
     1141 tacttcatct tttgtagcat tagcattatc acttatatct acaatgcgtg cattagtgcc
     1201 taaaatttct tttgcctgag aagcagcttc ttttagagtg tttaaatcat ctcctaagat
     1261 taaaaattgc acgggatcat caatacctgc accctctatc tttggaagtt ctaaaatttt
     1321 gatttttaaa ctttcatctt gaaatttttg acgatataaa cttactatgg cactttgtct
     1381 taaatttctt tcgtctaaat ttttaagttt aacataaatt ttagcctttg tagcatcttt
     1441 ggcatcatca tagcctacaa gtaaaaaagc gtatttgaca ttgctatcat ttttgatttt
     1501 ttcaagtaaa tttaaacttt tttctttcat ggcttctaaa cttaaatcct ttttgctttc
     1561 aagcaaaact tgaatttcac tatcatcttc cataggtaaa aaatcaagcc ctatgcgagt
     1621 ggctaaagca aaagaaagcc ctataaaaac aagagtggct aggataaatt ttactttatt
     1681 ttgtaaaatt ttatagagta aattttcata cttttgctct attttttcaa aaaaagcttc
     1741 tgttttttca taaaacttgt tttcttttgg atttaaaaat cttgccccaa tactaggtat
     1801 taaaaacaca gaaaccaaaa agcttataac tatcccactt gcaacgctta tgcctaaggc
     1861 attgaaaaaa agccctgata tagagttcat ataagaaata gggataaaaa cacaaagtaa
     1921 aactatactt atgcttaaaa cactaaaacc tatttcattg atacctaaaa aagcagcttg
     1981 taaaggcgga taagttttta gttttttagc aatattttca atcactacta tagcatcatc
     2041 gataaaaatt cctatgctta aggttaaagc tataaaagtt aagcggttta aatcatagcc
     2101 taaaagatcg ataataaaaa aagttgaaat gatagaagta ggtatagcta tgcaagcaat
     2161 gagagttgca cttaaatttc ttaaaaataa aaacacgata acaagggtta gaaaaatccc
     2221 caaaaccata tcaaaaatca cttgagaaag gtgcttgtgg atatttaagc ttttatcata
     2281 aagcatatta atgcttatat cttttggaat ttgtttttct aaaataggca aggcattttt
     2341 gacattttta atcatttcaa gggtgttata atttgtgatt tttccgagtt ctaaaagcac
     2401 cccttcttta ccttcgtata aagcactttg tttttcatct tcataaaggc ttgaaatatt
     2461 agcaatatca cttaaaaata ctcctgtttt tatgcgaaga ttactaagtt cttctaaatt
     2521 tgtggcttca aaatagcctt taatgatata gttatcttga ttgttattaa gttcgccaag
     2581 ggcttgttta aaattttgac ttttgataat atttgctaca tcaagggcgt taagattgta
     2641 ttttctaagt tcatttggtt ttaattctat gcgaatttgg ggttctaaaa accccttagc
     2701 ttcgatttta cctacccctt caactctttg caaaaaaggc tttattttgt cattgatttc
     2761 acgcatgagt tgtaatttat ctttagaata taaaaaaagc gaaatagcag aaccagaatc
     2821 tgaactgatt ttttcaattt caggcttaga aggtaggctt aaagttccta ttttatcacg
     2881 cacatcatta gcagctactt caagattttt acctagttta aactcgacta cactcacact
     2941 aaaattatca tacgcagctg aggttatggt ctttactcca tcaatctcac ttagagcatt
     3001 ttctatttct ttggtgactt ttgattctac gaaatttaaa tctccattta ccttgcttgt
     3061 aatctttata agaggtatgg aaacattagg aaataaattt acactcatgc taaaagcaga
     3121 gattagccca aaaatcataa gagctaagaa aaacattagc acagtaattg gtcggtttat
     3181 agctagttta aacattttta atctttagtg atgattctac cttcgccaaa aagcccaggt
     3241 gttagatttg tagtttgcac ttcagcataa atttttcttg tttttacttc tatgcttgga
     3301 taaataagac tgatttttcc tttcaattct gtaccatttt gatcgatttt ataaaagaaa
     3361 tcatcgccta atttaacttt atctttgtat ttttcatcaa aacttaaaat cagtttgctt
     3421 tgtggatagg aaaaaatttc tatcaaaggt tgagctactc ctcctactcc ttcgccaact
     3481 tgtataaatt tatttgcgat gatagcatca taaggtgcgc gcaattcttt ttttgtcatg
     3541 atatttttat aataagctat attgattttt gctttgttta aatttaaatt agcagcatca
     3601 aacttagctt tcatatcttc atagctttgt ttgtctataa cattttctac agctttgatt
     3661 ttttgcattt tgcttttggt attttcatat tctacaaggg caagttgata agaattttga
     3721 gcattttgaa gagctatttt ttcactttct tgatcaagag taagtaaaag ttctcctttg
     3781 ctgacttttt gtccaatttc tacaggaatt ttttgaacta aacctatgct ttcaagggca
     3841 agtttgcttt gttttgatgc ttctacattg aaacttgcgt aaatttcttc gccaaaggcg
     3901 caattaaaag caagaagtaa aaatagaatt tttttcattc tttaaccttt gaattaagat
     3961 ctatacccgc attaaaataa taatttgctt tagtaatttc aaattcattt ttagcaagct
     4021 ctaaatcgct ttgtgcttta aatttagcct ctaaagcttg aagatattcc acataagaaa
     4081 caagtcctgc ttggtatttt ttatctacac tttcaaaagc caaatttgca gcatttaagc
     4141 taagattaag agctaaaatt tgttcttgta aaacttttaa acttttgtct aaataattta
     4201 attcttcttt attttttctc tcactaaatc ttgcgtttgc attggctatt tgaacgttta
     4261 aacgctcttt ttcaacttct ttagcccttg cattgaaatc aaaaattttc cattccatac
     4321 ctaaaataaa ctgattacct tgagaatatt tttctaagaa ttgatctgct aagtttacaa
     4381 aaggagctgg aacttttgga ttataattgt ttttataaaa gttaaaatta tcttgaatat
     4441 aaaattttgg aaaatattca gcttttgcta aatttacact ttctttagca agattgattt
     4501 gttctttagc tatcattact tcatagtttt gacttttttc ttgttgcgga ttttctaaaa
     4561 aagcattccc ttgcacttta aaatctgtat tgcttaaaat tttaatctct ttttgtatat
     4621 tggcaagttt taattcattt tgactgagct ctaataagct taaatgatat ttggctttaa
     4681 tgctttcaag ttcatcttta gggctaagtc ctgcatcgta aaatttttgc aatctttcaa
     4741 aagttgattt taaaaaagct actttttgtt gattggctag taaaattttt tcaagactta
     4801 gggtgttaaa ataaagtgtg attgcattta aggcaaggta atttttgctt tgttctttgt
     4861 ctaaaaggct taatttttct ttgctttcta aagcccttaa attggcctct ctagcacccc
     4921 catcaaaaag caaaaaatta agagaaactt tagcaaataa actttcttgt ggatcgataa
     4981 tgaagcgatc tttattgttg gctacataag ctgagtttag actaagagag ggtagataat
     5041 ttctaaaagc ttgttctttg tccaaatttg cttgttcgct ttgcatttgt ttaatgagat
     5101 aggactcatt attttgactt agtgctataa attcgtgcaa attagaagct aacattgcta
     5161 agggataaag agctaaaaac atagctgatt ttaaatattt ttcaaacatt tgatatttta
     5221 gtatgcttta tataaatttc aattgaagtt ttttatataa aataaaattt atttgtttta
     5281 aacataaatt ttgttaaaat cctagcttta aaattttata tttaggatga aattttgtcg
     5341 gtaaaaaata ttagaaattt ttctattata gctcatatag atcatggaaa atctactctt
     5401 gcagatagga ttattagcga gtgtggtgct attagcgata ggcagatgag ttcgcaagtt
     5461 atggatacta tggatataga aaaagagcgt ggtatcacca taaaagcaca atcagtgcgt
     5521 ttaaattata aatttaataa tgaaaatttt gttttaaatc ttattgatac tcctggccat
     5581 gtggattttt cttatgaagt gagtcgttct ttggcaagtt gtgaaggggc tttacttgta
     5641 gtagatgctt ctcaaggtgt tgaagcacag actatagcta atgtttatat agcacttgaa
     5701 aataatcttg aaatcattcc tgtgattaat aaaatcgatt tacctaatgc tgatgttgaa
     5761 aaagtcaagc atgaaatcga gcatattata ggtatagatt gcaaagatgc aatttgcgtg
     5821 agtgcaaaaa caggagtggg tataaaagag cttatagaaa caattatcac taaaatccct
     5881 gcaccaaaaa cagatgatga agctcctact aaggctttaa tttatgattc ttggtttgat
     5941 aattatttgg gtgctttggc tttggttagg atttatgaag gaaatatagc taaaaatgat
     6001 gaagttttag tcatgagtac agataaaaaa catatagttc aagatctttt ttatccccac
     6061 cctttaagtc caattaaaac tcaatcttta caatcgggtg aagtaggcgt ggtggtttta
     6121 gggcttaaaa ctgtaggcga tgtacaagta ggcgatacta ttactttagt aaaaaataaa
     6181 gctaaagaag ccataggggg ttttgaaaag gctaaagctt ttgtgttcgc aggactttat
     6241 cccatagaaa cggataaatt tgaagattta agagatgctt tggataagct aaagcttaac
     6301 gatagttcta ttacttatga gcctgaaact tctttggctt taggctttgg ttttagggta
     6361 gggtttttag gacttttaca tatggaagtg attaaagaaa gacttgagag agaatttaat
     6421 cttgatttga ttgctacagc tccaactgtg acttatgaaa tttatcaaac cgatggagag
     6481 cttgttaaaa ttcaaaatcc tagcgagctt cctcctgtta ataaaatcga tcatataaaa
     6541 gagccttatg ttaaagccac tatcattact ccaagtgaat ttttagggaa tttaatcact
     6601 cttttaaatc gcaaaagagg agtacaggtt aaaatggact atatcacacc tgagcgcgtt
     6661 ttgctagaat atgatgtgcc tttaaatgag attgtgatgg atttttatga taaattaaag
     6721 tccttaacaa aaggctatgc gagttttgat tatgaaccta tagaatttag agtaggggat
     6781 ttggtaaaac ttgatattaa agtggcgggt gaaaatgttg atgcgctaag cattatcgtg
     6841 cctaatgaaa aagcacaaag taaaggaaga gaacttgtta gcgctatgaa agaaatagtt
     6901 cctagacagc tttttgaagt agccattcaa gcaagtattg gaaataaaat catcgcaagg
     6961 gaaaccgtta aatccatggg taaaaatgtg acagcaaaat gttatggtgg ggatattact
     7021 agaaaaagaa agcttttaga aaagcaaaaa gaaggtaaaa aaagaatgaa agctataggt
     7081 aaggtaaatt tacctcaaga ggcttttttg agtgttttaa agatagattg atgataaatt
     7141 taaaacttgg cttgaaattt gcttgtattt ttaatacaat tttaaaataa ttttctaagg
     7201 agaaaaaatg tttaaaaaat ttttgatttt tatagtgcct attttatttt tgagtgcttg
     7261 cgcaactaaa caagatactt ttgctcaagt taatcaaatt tctaaaaatt ctcaatgcag
     7321 ttcttgtgaa agtcctgatg gctttgaagc aaagattaaa gggcttttat acattagcga
     7381 tgttggaatt caatgttgtg ccaataaacg cactttagac actggtattg ctttaaaaaa
     7441 ggtttatttg catagatttt atgatttaaa agaagggcaa aaagttttaa atgctaaagg
     7501 gaaaaagtta tttgttgatg tgaattttaa tgcggtattt tatacttatt taaaacaaga
     7561 acttgaagct agaggaatag ttgtgcttga caataacgat caaaattcac cttatgtgag
     7621 taagattgat ttagaattta tatcttatgg agcaactcaa gatgctacag gattacattc
     7681 aaaactagta ggagttttac aagttagcga tataaacaaa aataagaaat ttacaatccg
     7741 caccaagcaa gatgtacaag gtttcgatga tctaaaagaa acaacttttt atactcattt
     7801 gttaataaaa caaatggcaa ataaagcagc tagtttaatc tctgaacttt gaggtgtata
     7861 aattgcggag cttttgctct gctttgcttt tgtgatttat gtgagctaga gctttctgaa
     7921 ttttccttaa atgtaagaa
//
LOCUS       DAEBKH010000074         7877 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.074, whole genome shotgun sequence.
ACCESSION   DAEBKH010000074 DAEBKH010000000
VERSION     DAEBKH010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7877
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.074"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..183
                     /locus_tag="KIL20_001098"
     CDS             <1..183
                     /locus_tag="KIL20_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721129.1"
                     /translation="AMFFTLFKLMAYVILVAGFLFLHRQDKLDIFAYICGISSLLVCV
                     FIFILYIKKYESKKNY"
     gene            161..1348
                     /locus_tag="KIL20_001099"
     CDS             161..1348
                     /locus_tag="KIL20_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD2721130.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFVGALVGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEIKGFIWFYIISLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            1341..3590
                     /locus_tag="KIL20_001100"
     CDS             1341..3590
                     /locus_tag="KIL20_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HBD2721131.1"
                     /translation="MINTQLASQIVNTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKTLSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSSKNE
                     NKQILNQSSFKALLNLSSKLENFKNYISKNPSHAQEKITPIANKILKELNSIKNDFFK
                     ALNKPENLMIKDPNILKQTATAFEKLENTLKNILGNQASKIQDKENILENLLSNKENM
                     KEEKLNHNTKNQDEEKHIKASKEETLTDDTKTDIKQDSKNEENSHAKETDIKEDENLD
                     SDIKTHEEDTQDTKNDIQNNETENKPDNDIKNSTPNQEKIKDGKQEKSKENIKENPKF
                     YETKTENKTSINTNTNTSNPNTNNTQNLNNSQNIQSNNNQTMQNIFKNQEFIKQNIVK
                     NLAFNVENLDLEQVQDLSKNLNNLSRRLNESLKELEPYTQNAKLNQAELKNLEHKLNL
                     STKDLAQIKPKTEQDIAESLHHDVKSTLLQISNLAKNEGNEAVYNQANRLLAQIEINQ
                     LMSLANDSINTYLPFSWDDLNDSKIMFRRGKKDKFFAQIKLEFAKLGDLEILISLNNE
                     KYIDINIMAENIEFRKTIYENAHELKRNINKAGLLSANFFVGDIIRSKFDTRNMKNLD
                     LEMGMDKKV"
     gene            3587..3868
                     /locus_tag="KIL20_001101"
     CDS             3587..3868
                     /locus_tag="KIL20_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HBD2721132.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(3865..4665)
                     /locus_tag="KIL20_001102"
     CDS             complement(3865..4665)
                     /locus_tag="KIL20_001102"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HBD2721133.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKS
                     PCEYESLNALFTRTLHIPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSI
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGALYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDTSIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGILNFNLKAGQGIKFGEKIAD"
     gene            complement(4662..5573)
                     /locus_tag="KIL20_001103"
     CDS             complement(4662..5573)
                     /locus_tag="KIL20_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HBD2721134.1"
                     /translation="MLYAPTYCLFFMTLAWDFIKLILALMGKRDKKYNLILRLIFEFS
                     LIVLSVFLIYISINNALKTPEVKSVDVEIPNLKQDLKIAMLTDIHLGKNLHENFLDKL
                     ITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYALGNHEYYHGINEV
                     LDLLRKHANMKILVNQNLDLGFINIAGLGDLAGLNKGLYAPDLARIKVDLNTSKASIL
                     LTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVHGLYNLGEKTKLYVS
                     SGAGFWGPSLRVFAPSEIVILNLKGKK"
     gene            5871..7166
                     /locus_tag="KIL20_001104"
     CDS             5871..7166
                     /locus_tag="KIL20_001104"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HBD2721135.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFGISWQHYYIQSENLKFHRQMALKLISEKKAFACFCTEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLIMLGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAQLAKFYT
                     QEASTIKELKEKMRAIFNTKDFGEFETECKILKELLKDIELFENYEDFKNELLSKSDL
                     KGKKFFMPLRIILTGNIHGPELGDLYPYIKNFIHELARI"
     gene            7169..7450
                     /locus_tag="KIL20_001105"
     CDS             7169..7450
                     /locus_tag="KIL20_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HBD2721136.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIIAALLSWVNPDPYNPIVQ
                     ILYKLSYPAYTLVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            7447..>7877
                     /locus_tag="KIL20_001106"
     CDS             7447..>7877
                     /locus_tag="KIL20_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HBD2721137.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLAQTFKNQRPDLTNLLLAFNT"
BASE COUNT         3045 a         1189 c         1050 g         2593 t
ORIGIN      
        1 gctatgtttt ttactctctt taaattgatg gcttatgtaa tattggttgc tggattttta
       61 tttttacatc gccaagataa attagatatc tttgcttata tttgtggaat ttcatccttg
      121 ctagtttgtg tgtttatttt tattttatat ataaaaaagt atgagtccaa aaaaaattat
      181 taaatcaatg acagcacttt ttgctggtat ggcattttta tttgcaggta atgccttgat
      241 agtaagctct ataggtgtta tattaaaaga aaacggagaa agttctttag ctgttggagt
      301 agtaagttct tgtttttttg taggcgctct tgttggaact atcagtgctc ataaaattat
      361 ttctcgtata ggtcatatac gctcttttgg gctatttggt gctatttttg gaatttcagc
      421 tatgcttcat acagtaagcg aaaatcttat tttttgggct gttttaagat ttttcatagg
      481 aatttgctac tatggacttt taatggtcat agaatcatgg cttaatgaaa aaagcaaaaa
      541 tgccattcga tctagaattt taggttttta tgaaattgtt ttttatcttg cgtttggtat
      601 tggagtttta atcatagcgt taaatttgag caaacatagt gtatttattc tcagtgcaac
      661 tttaatttta ctttcatctt tacctttaaa tctaattaaa atcaaagaac ctgttttgcc
      721 cgcatcaagt cctatttcta tacctaaaat ttttgatata gctcctttgg ctatcgtcac
      781 aagctttata gctggaatgc ttataaatgg ctttttttct atggcatctt tatttatact
      841 tttgcaaggt tttgatacaa aagcggtttc ttattttata ttttgtgggg ttttaggtgg
      901 ttttattgca caaaccatca taggaactat ttcagataaa cttggtcgca aatttgctat
      961 tatcacttgc gcaagcatag gatttatcac tatgcttata tttatctttt ttaaacttca
     1021 tttgtatatg caatattttt taggaattac tcttggtata ggaatatttt gtttatatgc
     1081 tttagcactt gctagagcaa acgatgtttt agtaagcaaa aataaaggcg tagagttagg
     1141 tcgtggggtt cttttttgtt attctttggg ctctttgttt ggccctttaa ttttaggttt
     1201 tttaatgcaa tattttgaaa tcaaaggttt tatatggttt tatataattt ctttagcatt
     1261 tttaattctt tttgctatca ataaaccaaa tattttaaat aaaaaattta agaaaaagcc
     1321 tggaaatatg gtgatatttg atgattaata ctcaactagc aagtcaaatt gtcaatacgc
     1381 aaaaaaatga tttaaaagta gataactctg cttcaaaaga taaaacaaat ttaaaagaca
     1441 atccaaaaga agcacttgca caagctttaa agcaaaattt aggtttaagc aaggacgcta
     1501 gtagtgagga aatactagca aaatttgttc aaaatgaaac aggtaccaaa ttaaaagaac
     1561 ttgttaataa acttttagat caaatcaatg ctcaaaaaaa tcccgattcc cctgtactta
     1621 aacaaggaaa aaatttaaat ttagctccta attttgctaa tgaattaaaa actttaagta
     1681 cagaacttgc aaaaagcgat acttttacac aagttttaga tagattaaat caaattttaa
     1741 aacctgccag tgaaataaaa aacaataact tagctccttt gtttaaaaat tcaggcgtat
     1801 ttttagaagc taaattaaaa gatgccctaa acgaagaatt actacccaaa agttttcact
     1861 ctcttttaag tacaatcaaa ggtcttagta gcgaaaaact aagcgttcag atagcccagc
     1921 ttgcaaatac aaatttaagc ccaaaagaca ctttaaaaga attaaaaaat attattaatt
     1981 ctagcaaaaa tgaaaataag caaattttaa atcaaagttc ttttaaagca cttttaaatt
     2041 taagttctaa attggaaaat tttaaaaatt atataagtaa aaatcccagt catgctcaag
     2101 aaaaaatcac ccctatagct aataaaattt taaaagaatt aaattccatc aaaaatgatt
     2161 ttttcaaagc tcttaataag ccagaaaatt taatgataaa agatccaaac atccttaagc
     2221 aaactgctac cgcctttgaa aaacttgaaa atactttaaa aaatatacta ggcaatcaag
     2281 cttctaaaat acaagataaa gaaaatattt tagaaaatct tttaagcaac aaagaaaata
     2341 tgaaagaaga aaaacttaat cataacacaa aaaaccaaga tgaagaaaaa catataaaag
     2401 catcaaaaga agaaactctc acagatgata ctaaaaccga tattaagcaa gattcaaaaa
     2461 acgaagaaaa ttcgcatgca aaagaaactg atataaaaga agatgaaaat ttagattctg
     2521 atataaaaac tcacgaagaa gatactcaag atacaaaaaa tgatattcaa aacaatgaaa
     2581 cagaaaataa gccagacaat gatataaaaa actctactcc aaaccaagaa aaaattaaag
     2641 atggaaaaca agaaaaatca aaagaaaata tcaaagaaaa tccaaaattt tatgaaacaa
     2701 aaacagaaaa caaaacttca atcaatacaa ataccaacac ttcaaatcct aacacaaaca
     2761 atacgcaaaa tttaaataat tctcaaaata ttcaatctaa caataaccaa actatgcaaa
     2821 atatttttaa aaatcaggaa tttataaaac aaaatattgt aaaaaattta gcatttaatg
     2881 tagagaattt agatctagaa caagtgcaag atttaagtaa aaatttaaac aatctttctc
     2941 gtagacttaa tgaaagcttg aaagaacttg aaccctatac tcaaaatgcc aagcttaatc
     3001 aagcagaact taaaaatctc gaacacaaac tcaatctttc taccaaagat ctagcgcaaa
     3061 ttaaaccaaa aacagaacaa gatatagctg aatctttaca tcatgatgta aaatcaacac
     3121 ttttgcaaat ttcaaatttg gctaaaaatg aaggcaatga agctgtatat aatcaagcta
     3181 atcgtctttt agcacaaatt gaaatcaatc agcttatgtc tttagctaat gattctatca
     3241 atacttatct gcctttttct tgggatgatt taaatgattc taaaattatg tttagacgcg
     3301 gaaaaaagga taaatttttt gctcagatta aactcgaatt tgcaaaactt ggggatttgg
     3361 aaattcttat ttctttaaat aatgaaaaat atatagatat taatattatg gcagaaaata
     3421 ttgaatttag aaaaaccatc tatgaaaatg cccatgagct taaaagaaat atcaataaag
     3481 caggactttt aagtgcaaat ttctttgtag gtgatatcat aagaagtaaa tttgatacta
     3541 gaaatatgaa aaatttagat cttgaaatgg gtatggataa aaaagtatga gcaaaatcaa
     3601 aagatcaatt aaaaaagctg tagctctagg ctatcaaaaa gaaaaaaact ctgccccaaa
     3661 agtgcttgca agtggcaaag gtgaaagtgc tgctaaaatt atttctttag ccaaggaaca
     3721 cggagttccc attaaagaag atgaagattt aatagaaatt ttaagcaaac ttgacttagg
     3781 cgatgaaatt ccacctaata tgtataaagc tgtagctgaa gtttttgcct ttatctatca
     3841 aatggcaaat aaaactccta aaaactaatc cgctattttt tctccaaatt taataccctg
     3901 ccctgctttt aaattaaaat ttaaaatccc tttttgagag attaaaacta tagtagaacc
     3961 cagttcaaaa tttcctagtt cttcgccttt tttgaaattt aaattttcat attttctagt
     4021 aaaattatga gaaattttag cattggtttg tatgcttgta tcaaaattaa aacgcatttt
     4081 tcctacattt tgcgctccta caaaaacaag ccaaaaaata cctttttcat tttgacattt
     4141 taaactcact ctttcatttt ttacatataa attactaatg cgttctaaat gcttttcatt
     4201 tacactataa agggcgccgc ttgtgtaagt tgcgcttaaa atttgcatat cacaagggct
     4261 gtgataacga tgataatctt ttggagaaag atagatattg acataatcaa gcccattttt
     4321 aagctcatct ttttcaaagc tatcttttaa aagctcctca atgctataag tatgcccttt
     4381 tatagaaaaa gcaaaatgtt cttcatttgc caaaaaagta cttccacact ctaaaatttt
     4441 accatcactt ggactgataa aaccttcttc aagttttctt ggaatgtgca aagttcttgt
     4501 aaaaagagca tttaaactct cgtattcaca aggagattta aattcactca tatcgatatt
     4561 aaaatactta acataatttt cattaataac tttttgtatc attttaggaa atttaatccc
     4621 cgctacaaaa ccaaaaagcc tcgaactttc ttttgaaaaa ctcatttttt tccttttaaa
     4681 tttaaaatca ctatttcact cggagcaaaa actctaagac ttggccccca aaatcctgct
     4741 ccactactca cataaagctt agttttttct cctaaattat aaagcccatg aacaaaacct
     4801 tgctgaagtt taactaaaaa cataaaagga aaaatttgcc ctccatgcgt atgcccactt
     4861 aaaacaaggt caaaatcact taaatcataa agcaaagctg ttttaggttg atgtgtgagt
     4921 aaaatactag ctttacttgt atttaaatcc acttttattc ttgctaaatc aggagcatat
     4981 aaccccttat taagtccggc taaatctcca agtccagcaa tatttataaa acccaaatct
     5041 aaattttgat tgactaaaat tttcatatta gcatgttttc taagtaaatc caaaacttca
     5101 ttgataccat gataatactc atgatttccc aaggcataaa aagttccata agtggaatta
     5161 aaatcattaa gttttgagat gtaatttttt aaatctttag gattagtatc aatcagatct
     5221 cctactatta caaccatatc aggactttgc aaattcactt tagtgatgag cttatctaaa
     5281 aaattttcat gcaaattttt acccaaatgt atatcagtaa gcatggcaat ttttaaatct
     5341 tgtttaagat ttggtatttc aacatcaaca ctctttactt caggtgtttt tagagcatta
     5401 tttatactta tataaattaa aaacacactt aaaactataa gagaaaactc aaaaatcaaa
     5461 cgcaaaataa gattatattt tttatctctt ttacccataa gagctaaaat caatttaata
     5521 aaatcccaag ctaaagtcat aaaaaacaaa caataagtcg gcgcataaag catggctaaa
     5581 atttcatacc aagtatcact taaatattca tctctacgaa atattaaaaa cacagcttgg
     5641 gctaaaaaag cacaataaaa ataaaggcaa aaattttata aaaatactta aaaagagtaa
     5701 ttttcttgat taatctttta taaatataaa catttgctaa gccaaaaatc aataatacaa
     5761 tgaaagaaaa aattaaaaat atcataaaag tattataacc aagtaaaatt aaatatccgt
     5821 ataaattttt ctgttataat aagcttttaa ataattttaa aggctataaa atgtaccgtt
     5881 ttgcaccttc tcccacaggt gatatgcaca taggaaattt acgcgcagca atttttaatt
     5941 atatctgtgc aagacaaaaa aatatggatt ttatcttacg tattgaagat actgataagg
     6001 ctagaaatat agcaggaaaa gaagaagaaa tcaaagaaat tttaaatctt tttggtattt
     6061 catggcagca ttactatata caaagtgaaa atttaaaatt ccatcgccaa atggctttaa
     6121 aacttataag tgaaaaaaaa gcttttgctt gtttttgtac cgaagaagaa cttgaagcaa
     6181 aaaaagagtt agctaaaaaa caaggtaaag cttatcgcta cgatggcact tgtgaaaaac
     6241 tagccgatat tgatgtttta gaatgtgaaa aaccctttgt tatccgtctt aaaaaaccta
     6301 ctcatactat gaaattcact gattttatca aaggcgagct tagtttcgag cctgaaaaca
     6361 tagactcttt tgtcatcatg agaacagata aaactccaac ttataatttt gcttgtgcgg
     6421 ttgatgatat gcttgaaaat gttacttgta ttatacgcgg agaagatcat gtttcaaaca
     6481 ctccaaaaca agaacatatc cgcgcaagct taggttataa taaagctatg acttatgcac
     6541 acttgcctat cattttaaac gaagaaggtg ttaaaatgag taaaagagaa gcacattctt
     6601 ctgtaaaatg gctacttgaa agtggaattt tacctagcgc aatcgcaaat tatcttatca
     6661 tgctaggcaa taaaactcct tgtgaaattt ttaccttaga agaggctata aaatggtttg
     6721 atatttctaa agtttcaaaa gctccagcaa gatttgatct taaaaaactt ttgcaaatca
     6781 atcgcgaaca tatcaaaatg ataaaagatg atgagcttaa taaaatttta gatttaaata
     6841 aagatcttgc acaacttgct aaattttaca ctcaagaagc aagcaccata aaagaactta
     6901 aagaaaaaat gcgagctatt ttcaacacaa aagactttgg agagtttgaa acagaatgta
     6961 aaattttaaa agaactctta aaagatattg aactttttga aaactatgaa gattttaaaa
     7021 atgaactttt aagcaaaagc gacttaaaag gtaaaaaatt tttcatgcct ttaaggataa
     7081 ttttaacagg aaatatccac ggacctgagc ttggtgatct ttatccttat attaaaaatt
     7141 ttattcacga attagcaagg atttaactat ggttatagac tcttttatta tttctatttt
     7201 tcaagtacta caaattgtca ttaacattta tacttggatt attatcatcg cagcactttt
     7261 aagctgggta aaccctgatc cttataatcc catagtgcaa attttatata aattaagtta
     7321 tcctgcttac accttagtta gaaaaattcc aacacgcatt ggtaatattg atcttgcgcc
     7381 tttgattata gtcttagcat tgcagtttct tggcattttt cttgggaata tcttaaggag
     7441 tatattgtga taaaaaaaat actcgttttt ttatttattt tttcaagttt aaatgctaca
     7501 caatatagca tagaaaaact caaaaaggaa gaaaattcac ttgctaagga ttattatatt
     7561 tataggcttt tagaaaaaaa taaaatcagt aaaaaagatg cacaagattt aaattctcat
     7621 atttttcgct atataggaaa aattaaatcc gaacttgaaa aaatcatccc tttaaagcct
     7681 tatatcaacc caaaatatgc taaatgctat acctatacag caaatactat cttagatgca
     7741 aatttaactt gtcaaagtgt gcgcttaaat tcattagttt ttatagcgag tttaaattcc
     7801 aaagaccgaa cgactttagc tcaaaccttt aaaaatcaaa gacctgattt gacaaattta
     7861 ttactagctt ttaatac
//
LOCUS       DAEBKH010000075         7704 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.075, whole genome shotgun sequence.
ACCESSION   DAEBKH010000075 DAEBKH010000000
VERSION     DAEBKH010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7704
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.075"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..429
                     /locus_tag="KIL20_001107"
     CDS             <1..429
                     /locus_tag="KIL20_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HBD2721138.1"
                     /translation="ERVDAPLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFN
                     AERFYHRAQLILREEGFINFTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFAS
                     KMPVEWKVFPSMDVPREFNILILPYEVYQKERGSSWSKHM"
     gene            443..1279
                     /locus_tag="KIL20_001108"
     CDS             443..1279
                     /locus_tag="KIL20_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HBD2721139.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSSNNNDTTNFAMPDQEVPAEPTATTSENTTPQASTPKQEVTQTAKPKEE
                     AKKQTAVKKEKESTKQIPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGGKEITKVLIGPFEKADIAAELAKIRKDIAKDAFSFT
                     LK"
     gene            1276..2064
                     /locus_tag="KIL20_001109"
     CDS             1276..2064
                     /locus_tag="KIL20_001109"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HBD2721140.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAINALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKERFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIRDKREMIKNAMQQALILK"
     gene            complement(2138..3037)
                     /locus_tag="KIL20_001110"
     CDS             complement(2138..3037)
                     /locus_tag="KIL20_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HBD2721141.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALEPINIEQNNNYSDYFENSVLKIRIEKEIDLLKRNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNAQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSSTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENTPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            3127..3942
                     /locus_tag="KIL20_001111"
     CDS             3127..3942
                     /locus_tag="KIL20_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HBD2721142.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            4011..4793
                     /locus_tag="KIL20_001112"
     CDS             4011..4793
                     /locus_tag="KIL20_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HBD2721143.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            4777..6768
                     /locus_tag="KIL20_001113"
     CDS             4777..6768
                     /locus_tag="KIL20_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HBD2721144.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            6761..7486
                     /locus_tag="KIL20_001114"
     CDS             6761..7486
                     /locus_tag="KIL20_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HBD2721145.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            7514..>7704
                     /locus_tag="KIL20_001115"
     CDS             7514..>7704
                     /locus_tag="KIL20_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721146.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKNKLDTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRV"
BASE COUNT         2600 a          975 c         1526 g         2603 t
ORIGIN      
        1 gaaagagttg atgctccttt aaatttaaat gtcatgagag aacacgctgc taaaaaaatt
       61 gttgtcgctc atgatttaat aacaaaagat aataaagtag aaaatattgt ctttgattat
      121 aatggtttta atgctgaaag attttatcac cgtgcacaac ttattttaag agaagaaggt
      181 tttataaatt tcacagccta taagactaaa actccaggac atttacatct ttatattcac
      241 aaaggacaca cggcgttaaa cgaaggttat tctttagcgt ctaaactttc aatgatgttt
      301 gcaagtaaaa tgccagtaga atggaaggtg tttcctagta tggatgtacc tagggaattt
      361 aatattttaa tattgcctta tgaggtttat caaaaagaac gaggaagttc ttggtctaag
      421 catatgtaag aaaggacaaa ttatggaaaa tcaaaaaaat gaatttgatg atattatttt
      481 agaaaaaagt aataaaagtg aaaaagtaaa aaaaattctt ttacgagtta ttgctttagt
      541 tattttgttt ttagctatca tgatagttat gaagcttatt aatggtagtg gtgatgaaaa
      601 tacgcaaaat caaagtgtat tgccaagtga acctatagca actcaagaca ataacaatga
      661 tacttctttt gaaagtatgc caattacaga taatacttca gcagaagatc aatttgaggc
      721 attaagaaaa caatttcaag atgaacaaaa tacaactcaa aatacaacaa cctctagttc
      781 aaataacaat gatactacaa attttgctat gcctgatcaa gaagttccag cagaacccac
      841 agcaactact tcagaaaata ccactccaca agcaagtact cctaaacaag aagtaacaca
      901 aactgcaaaa cctaaagaag aagcaaaaaa acaaacagct gtaaaaaaag aaaaagaaag
      961 tacaaaacaa atccctaaaa aagaacaaaa tgcaaatgat ttatttaaaa atgttgatgc
     1021 taaacctgtg catccaagtg gtttagcatc gggcatttat gtgcaaattt tctcagtaag
     1081 taatttagat caaaaatcaa aagaacttgc ttctgtaaaa cagaaaggtt atgattataa
     1141 actttataaa actacagttg gaggtaaaga aattaccaag gttttaatag gaccatttga
     1201 aaaggcagat attgcagcag aacttgctaa aatccgtaag gatattgcaa aagatgcttt
     1261 ttctttcact ttaaaatgaa atttttagca gttataggcg atcctatttc tcactctaaa
     1321 tcgcctagaa tgcataataa tgctattaat gccttagggc ttgatagcat ttatacacgc
     1381 tatcatttaa gaaatgctaa ctgtttaaga gaagattttt ttaaattagg acttagtgga
     1441 gctaatatta ctttgccttt taaggaaaaa gctttagata ttgctgatgt gaaggatgat
     1501 tttgctagaa atattggctc tgcaaatact ttatgcttaa aagaagataa aatttacgct
     1561 tataatactg atgctttagg ttttttagag gctattaagg attttgataa tataaaaaaa
     1621 gctttgattt tgggtgctgg aggtacagct ttggcgcttg cttatgcatt aaaacaaaaa
     1681 ggcgtagaag tgtatatagc taatcgtagt aaagaaagat ttaaagattt tttagcttat
     1741 ccaacttatc tttataaaaa cttgcaagat tttgactttg atttggttat aaattcaact
     1801 tctgctggat taaaagatga aaatttacct tgtgatagag agcttttaga tagaatttta
     1861 cctaaagcta aatttgcttt tgaggtaatt tatggcagag aaacaccttt ttatagattg
     1921 tgtaaagagt atcatttaaa aattaaagat ggacttgata tgcttttatg gcaaggggtt
     1981 tttgcttttg agcttttttt tgaaatacga gataaaagag agatgataaa aaatgcaatg
     2041 caacaggcat tgattttaaa gtagaatgat agttattttt ttgtataaga aaatcttatt
     2101 ttttgtgtga gaaagtttaa ttttctcaca agttttatca ttcaaatatt tctaccccat
     2161 cttgattttt actttgatta ttttgatttg ttgaagatgg atttgtagga atattttgtg
     2221 taggtgtgtt ttcaattgta ttattttgat tagagtttgt ttgaggtaga ctttcttcaa
     2281 aagtagcatc gccatcaaaa ctattaaaac cactgtttgt attaggtata gttttgccta
     2341 tgtctgttgc ttttggaaga ttgttataaa gtgtatttaa tgtattttta taaaaagcta
     2401 aaaaactttt atcaatttca aaagcaggtt gctctaaacc tttattaagt tgagttggta
     2461 cggtggagat agtagtttta aacatattaa ccccatcatc atttttaata ggatagttaa
     2521 gcgcaactaa agaatctagt ttggtgctgc ttgaaagatt ggttgaattt tgtggattgt
     2581 gtgcatctat aaaatctatt ttacctttaa aatttatacc taaattggat tttacataat
     2641 ctccactcat aaaattgctt gttttttgtg catttttttc ttccgtataa atactgattg
     2701 aacttttaag agtatagtct ggattagtag taactatttt atagcctttt agttgagcga
     2761 tggttttgat ctgctcttct aaatttcgtt ttaaaagatc aatttctttt tctatgcgaa
     2821 ttttaagcac tgaattttca aaataatcag aataattgtt attttgttct atattaatag
     2881 gctcaagagc aatgcttact ccagaatcaa taggttcaac ctttgttgga acttggggtt
     2941 taaaatttgg catagaaaca ttgacaaaat tactgcttgt acccccacaa gctgctaaaa
     3001 ttaacatact actagcaagt aaaatatatt ttttcatttt ttacctttat ttaatgtgtt
     3061 tgtgttaatt atagcaagtt aaagtttttt tgttatattt ttataaaaga aaattaggaa
     3121 agatatatgg aattttggca gcatatttat tcaaatttta atgttatagc ttttagcatc
     3181 tttggtttaa aggtgcattg gtatggcatt atgtatgtta tagctttgct tttggctttg
     3241 cttttggcta aattttttgt aagaaaattt caactagaca ttaatgaaaa acatttggat
     3301 agttatttta tatgggttga aataggggtt attttaggtg caaggcttgg atatattttg
     3361 atttatgatg caaatactat gtattatatt actcatcctt ggcaaatttt taatccttat
     3421 attaatggtg aatttgtagg tattcgaggt atgagttatc atggagcaat tataggattt
     3481 ttgatagcta ctttattgtt ttgtaaaaaa tataaaacaa atccttggat ttttcttgat
     3541 ttggttgctt taagtgttcc attggcttat gtttttggtc gtataggaaa ttttttaaat
     3601 caagagcttt ttggtcgcat tacaaatgtg ccttggggaa tttatgttga tggagtattg
     3661 cgccatccat cgcaacttta tgaagcattt ttagaaggta ttgttgtttt tattatagtt
     3721 tatttagcaa gatttaagca aagttttcaa ggggaattga ttcttgttta tgctggtgct
     3781 tattcattag caagatttat atgtgaattt tatcgcgagc ctgattttgg tataggtttt
     3841 gttttatggg gtatgagtat ggggcaaatt ttaagtttta taatgtttat aacagctttg
     3901 ttagtttata tttgtataaa gtttaaaaaa gtaaatattt aatctatctt aaagactttt
     3961 gtaatataat gaaatggatt tttttaattt ctttttacaa aggagtaaag atgcgtgagc
     4021 ttatcgaagg ttatttgggt aagagcattg agggcaaaaa aagtaaaatg cctgcgaaat
     4081 tagactttat ccaaagtgcc tcagggcttt ttttaggtct ttttatgtgg gtgcatatgc
     4141 tttttgtttc tacaatttta gtcagtgagg atttttttaa ttctgtagtg cattttttag
     4201 aattaaaatt tgtttacgat aatcctgtta tgagttatct tacttcattt ttagccgcct
     4261 gtgttttagt ggtttttttc gttcatgctt tacttgcaat gagaaaattt cctattaatt
     4321 accgtcagta tcaaatacta agaacacaca gtaaaaaaat gaatcacagc gatacttcgt
     4381 tatggtgggt tcaagctttt acaggtttta ttatgttttt cttaggttct gctcatctta
     4441 tttttattgt aaccaatgca gataaaatca gcggcgatat gtcaggagat agggttgtaa
     4501 gtcattttat gtggcttttt tatgctgttc ttttagtctg tgttgaactt catggaagta
     4561 tagggcttta tagactttgt gttaaatggg gttggtttga aggaaaaaat gtaaaagaaa
     4621 gtcgcaaaaa gcttaaaact gctaaatgga taatcagtat tttcttccta gttttaggtg
     4681 tgttaagtct tgcagcattt ataaaaatag gttatgaaaa ctaccaaaat caaacccaaa
     4741 ctactgcgat gataaaaaac tacaatggag caaattatga atatacaata tagtgatgct
     4801 ttagtaatag gcggaggatt agcaggtctt agagcggcta ttgaagtagc aaagagtggc
     4861 caaagtgtaa cacttttaag tatttgtcca gtgaagcgtt ctcactctgc agcggtgcaa
     4921 ggaggtatgc aggcaagttt agcaaatggg gcaaaaggtg agggtgataa tgaagatctt
     4981 cacttcgcag atacagtaaa aggaagtgat tggggctgtg atcaagaagt agcaagaatg
     5041 tttgctcaaa ctgcaccaaa agcagtgcgt gaacttgcgg cttggggtgt gccttggact
     5101 agagttacta aaggtccaag aactgttgta atcaatgcac aaaaaactgt gattgaagaa
     5161 aaagaagaag cgcacgggct tattaatgct agagattttg gtggaactaa aaaatggaga
     5221 acttgctata tcgcagatgc aacagggcat tgtatgcttt atggtgtagc aaatgaagcc
     5281 attaagcacc aagtaaagat catcgataga atggaagcgg taagaatcat ccatgatggt
     5341 aaaaaatgct taggtgtaat tgctagagat ttaactaatg gacaactcat tgcttatatt
     5401 gcaagaggaa ccatgatagc aacagggggc tatggtagaa tttataaaca aactacaaat
     5461 gcggtaattt gcgaaggaac gggtgcagcc atcgctcttg aaacagggct ttgcagactt
     5521 tcaaatatgg aagcagtgca atttcatcca actcctattg taccaagcgg tattttgctt
     5581 actgagggtt gtcgtggtga tggcggaatt ttacgtgacg tggatggata tcgttttatg
     5641 cctgattatg aaccagagaa aaaagaactt gcaagccgtg atgtggtaag tcgtagaatg
     5701 atggaacata ttcgtaaagg caaaggtgta aaaagccctt atggggatca tttatggctt
     5761 gatatttcta tattgggtcg tgctcatgtg gaaaaaaatc ttcgtgatgt gcaagatatt
     5821 tgtaaaactt ttaatggtat tgatccagca gacgagggtc caaaaggttg ggcaccagtt
     5881 cttccaatgc agcattattc tatgggtgga attagaacta aaccaacggg tgaaagtcaa
     5941 tggttaaacg gactttttgc ttgtggggaa gcagcttgct gggatatgca cggatttaat
     6001 cgtttaggtg gaaattcatg tgctgaaact gttgtagcag gtatgatagt gggagattat
     6061 tttgcagatt attgtaaaaa taatggtgaa gtaattgata caaatgtagt aaaagacttc
     6121 ttaactaaag agtatcaata tttaaaatct ttagtagata aagaaggtaa acataatgtt
     6181 tttgaaatca aaaacagaat gaaagaaatc atgtgggata aggtggccat ctttagaaca
     6241 ggtgaaggtt tgaaagaagc agtagatgaa cttgaaaaac tttataaaga ttctcaagac
     6301 gttaaagtac attgtaaaga acttgattgt gcaaatccag agcttgaaga agcgtataga
     6361 gtgccaagaa tgttaaaaat agcactttgc gtagcttatg gagcgctttt aagaacagaa
     6421 agtcgcgggg cgcattatag ggaagattat ccaaaaagag atgatttaaa ttggatgaaa
     6481 agaaccaata ctttttgggt agaaggcgaa accttaccac gcatagaata cgaagagctt
     6541 gatattatga aaatggaaat tccaccagca ttccgtggat atggagctaa aggaaatatt
     6601 atagaaaatc ctttaagtga aaaacgccaa gctgaagtgg atgctatccg tgaaaaaatg
     6661 gaagctgaag gcaaaggtcg ttatgaaatt caaaacgctt taatgcctta tgaattgcaa
     6721 gctaaatata aagcaccaaa ccaaagaata ggagttgatt atgagtagaa aattgacaat
     6781 aaaggcattt aaatacaatc ctttaagcaa aatttctaaa ccacattttg tgacttatga
     6841 gcttgaagaa actcctttta tgacggtttt tgtatgtttg actttgatcc gtgaaaaaat
     6901 ggatgcagat ctgagttttg actttgtttg tcgtgcaggg atttgcggat cttgtgcaat
     6961 gatgattaat ggagtgccaa aacttgcttg taaaactttg actaaagatt atcctgatgg
     7021 agtgatagag cttatgccta tgcctgcatt taggcatatt aaagatttaa gcgtgaatac
     7081 aggcgagtgg tttgaagaca tgtgtaagcg tgttgaaagc tgggtgcata atgaaaaaga
     7141 aactgatatt tctaaacttg aagaacgcat tgagccagaa gttgcggatg aaacttttga
     7201 acttgatcgt tgtatagagt gtggaatttg tgtagcttct tgtgcaacta aacttatgcg
     7261 cccaaatttc atagctgcta cagggctttt aagaacagct agatatttac aagatccgca
     7321 tgaccataga agtgtggaag atttttatga attagtaggc gatgatgatg gtgtttttgg
     7381 ttgtatgtcg ttgcttgctt gtgaagataa ttgccctaaa gaattacctt tacaaagtaa
     7441 aatcgcttat atgagaagac aacttgtcgc tcaaagaaat aaataaatct ttcccctttt
     7501 taaggggaag attatgaaag aattattcca aaaaatttgg caaaatgaac tccaattttt
     7561 aaattttgat gctaaatttc aagataaaaa caaacttgat acagccgagt gtgcgattat
     7621 tttaagtgtc aataaagaca attatgaaag atattttctc ttaaaagaat ttcaagagct
     7681 ttgcaaaaaa attgatttaa gagt
//
LOCUS       DAEBKH010000076         7700 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.076, whole genome shotgun sequence.
ACCESSION   DAEBKH010000076 DAEBKH010000000
VERSION     DAEBKH010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7700
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.076"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..1189)
                     /locus_tag="KIL20_001116"
     CDS             complement(<1..1189)
                     /locus_tag="KIL20_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HBD2721147.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKNSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWLNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQDQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELILKELS
                     YKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKKYFLKN
                     IEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLM"
     gene            1162..1434
                     /gene="yajC"
                     /locus_tag="KIL20_001117"
     CDS             1162..1434
                     /gene="yajC"
                     /locus_tag="KIL20_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HBD2721148.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            1427..3007
                     /gene="secD"
                     /locus_tag="KIL20_001118"
     CDS             1427..3007
                     /gene="secD"
                     /locus_tag="KIL20_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HBD2721149.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVSDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVIFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKSNNTRFWFGYRRR"
     gene            3007..3978
                     /gene="secF"
                     /locus_tag="KIL20_001119"
     CDS             3007..3978
                     /gene="secF"
                     /locus_tag="KIL20_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HBD2721150.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILEKQGTFQNLSVTEFGSNEEVTIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            3988..6417
                     /locus_tag="KIL20_001120"
     CDS             3988..6417
                     /locus_tag="KIL20_001120"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HBD2721151.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKAIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYTQKSGKLIHSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQSCGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKALRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEIFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            6414..6926
                     /locus_tag="KIL20_001121"
     CDS             6414..6926
                     /locus_tag="KIL20_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721152.1"
                     /translation="MKKILIFCIGLFLGACGYVPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            6910..>7700
                     /locus_tag="KIL20_001122"
     CDS             6910..>7700
                     /locus_tag="KIL20_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721153.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLL"
BASE COUNT         2784 a          903 c         1428 g         2585 t
ORIGIN      
        1 tcattaagag ttgctggagt ttgtattcgc tgctattatt aaaccaagca ttgttgctta
       61 gggctataat aatttgtgaa ttttgatagt tttgttcttt ggtagcttca taacaaattg
      121 catttgtgat aatttgatta tctaatttat atttgctttg tataggacct ttggaaaatt
      181 cttcaatatt tttaagaaaa tatttttttg ttaagtcttt aaaaaatgga atttcttcac
      241 caaagggaac taaaaaatgc ttatttaaaa tatagacatt gcctttttta aagatataag
      301 tgctattata agtatgctct ttttcaacat gaaatgctcc tgtaataatg gtgattttat
      361 aagataattc tttaagtata agctcgtatt tggtattttt taaatcaaaa gcaaaagcgg
      421 tttcaggcaa gattacaagt tctttttttt catttatagc ttgaagtata tcttgaatta
      481 agatatcaga atttgatttt aaattttctt gtaaaaattt ttgatcttga gagatattag
      541 tattgatgag tttatagttt aaattaagag tttgagcttg tttttcatta tattgaaatc
      601 cactaaagaa taaaataaga acaatcgcta ttttataata tcttgatata taaccctcat
      661 agatgaaata tgctattaaa aatatgcaaa taataccacg ataacttggg tcaaaaaaac
      721 cataaactgt aaaaattccc caattaagcc aatcaaatcc taaaggatgg ataaaactta
      781 tgcaaaaaat tccacaaagc cttaaaaaat caaattttaa taaataacat aatctaaaaa
      841 gtagtccata aataaaacca atgataattg gtataattgg cactaaatag tttagattaa
      901 aataaattga agataaacca atccaccaaa accaaagaat ccctacaaaa aaacctatcc
      961 aaaaatattg tttagaattt ttacttttta ggagtaaaac taagccccaa atagctaaaa
     1021 atgggctaat agtttgtgta aaaatatttt caaaaaatga tagataaata gaatttgaaa
     1081 gtaaaattgc aataaaaaag acttttatta ttttaaaaat gatagaatta gtgtttaatt
     1141 tttttggaat aaaggaaaaa tatggcagaa aattcaattt taacttcatt gttacctctt
     1201 gtagtgttat ttgcaatttt ttatttcttg gtgatcagac cgcaacaaaa acaagcaaaa
     1261 gcacataaac aaatgcttga gtctttgcaa aaaggagata aaatcatcac taatggcgga
     1321 cttatttgcg aagtcgtaaa accagaggag gattttatca aagttaagct taatgaagac
     1381 aatgttactg caaaaatttc aagagaattt atagcaaaga aaattgatgc gtaattctaa
     1441 aatcaattat cgcttgatta tttttatagc ggtatttatt tttggagtgg ctttttcact
     1501 cccttctttt ttgcagtcag aacgtggtgc gaagattaat ttagggcttg atttgcaagg
     1561 cgggctttat atgctcttag gtgtagataa tgaagaagct gtaaaatcta aaataaaatc
     1621 aattgcatct tcattgagtt attcttttaa taaagaaaat attttaaatg atggcttaaa
     1681 tacccatgat gatattttag aatttacttt gcttgataat gcagatattg caaaagttga
     1741 aaatttgctt aaagaaataa aaggaattaa tatacaaagt gaaaatatgc actataaaat
     1801 ttcttttacc tcagaagaag taaaaaatat agaaaatttt gcacttttgc aagcagttga
     1861 aaccataaga aataggcttg atcaatttgg tttagcagag ccaacagttg ctaaacaagg
     1921 tgatgataag attttggttg aacttgcagg gattaaaacc aaagaagatg aactaagagc
     1981 aaaagagcgc atcacaaaag cagcacattt gcaacttatg gaagttgatg attctaaaat
     2041 gggtcaagct tctacaatga gcgatgctga ggctgcgagt tatggactga ttttagtgtc
     2101 tgattctaga aatccaaatt taaaatatac cttaaaaagc atacctattt tagatggatc
     2161 tatgcttact gatgctagag tagggattag tgataagagt aattatcctg tgattaattt
     2221 tactttaaat gccgagggtt ctaaaaaatt tgctgattat acaggagcaa atgttggaaa
     2281 gcgtcttgct attgtacttg ataataaagt gtattctgct ccatctatca atgaacgcat
     2341 aggcggaggt agtgggcaaa tcagtggagc ttttacccaa gaagaagcgc gtgatgtggc
     2401 ggtagcttta agaagtggag ctttgcttgc gcctgtaaaa ttacttgaac aaagaagtat
     2461 aggaccatct ttaggtgctg atagtattaa aatgagtatg atagcattaa tcggtgcatc
     2521 ggtttttatt gtaatattta tgatgatgta ttacggtgtg gcaggaattt ttgcaaatat
     2581 tgcaatgttg gttaatgttt tggtagtagt ggctgttatg gctatgtttg gagcaacttt
     2641 aactttacca gggatggcag gacttgtttt aactgtgggt atggcggtag atgcaaatgt
     2701 gattatcaat gagcgcatac gagaactctt gcgagatgga gtaaatataa gagctagtat
     2761 agaacaaggt tataaaaatg ctatgagtgc gattatagat tcaaatatca cttctttagt
     2821 tacttcggta gcactttatg cctatggaac aggagcagtt aaaggttttg ctgtgacttt
     2881 gggaattggt attgtcgttt ctatgattac agctatttta ggaactcacg gaatgtttga
     2941 ttattttatg caacgcatag aaaaaagtaa taatacaaga ttttggtttg gttacaggag
     3001 aagataatgc agttttttag cgaaaagaaa atttatgatt ttatgagaat gcgttttgct
     3061 gctatttctc tttcttttat tttgtttttt ggttctattt atttgctttg ggataggggt
     3121 ttgcaatatg gtattgattt tagcggagga actttagttc agcttaaata tgaaaatgca
     3181 gctcctataa cacaaatccg agaaatttta gaaaaacaag gaacttttca aaatttatct
     3241 gtaactgaat ttggaagcaa tgaagaagta accatacgct ttttaggaag caacgataat
     3301 gtaagcaatg atataggcga gcatataagc actcttttaa aggatacggg aaaatttgaa
     3361 gtgcgtcgtg ctgatgtggt aggtccaaaa gtaggtgatg aacttagaaa taaaggactt
     3421 atggctatag ctgtatcttt gatagcaatt ttaatttaca tagcgttgcg ttttgagtgg
     3481 cgttttgctc ttgcggctat aatcagtgaa attcatgatg ttgtgattac tttaggggca
     3541 atttctttat ttaaaattga tgttaattta gatactttgg ctgctgtttt aactgtgctt
     3601 gggtactctt tgaatgatac aattattatt tttgatagaa tcagagaagg cattaaaacc
     3661 agtaaaaaaa ccgaacttgc acctattatc aatgaaagtg tttcagcaac tttatcaaga
     3721 acggttttaa cttcagggtt aactttagca accgttgtga tactttattt ctttggcggg
     3781 gaaatgatac aaggattttc tttggcttta attgtaggta ttatagcggg aactttaagc
     3841 tctatttttg ttgcaagtcc gacattatta tggtttaaat ttagtgtgct tgagtttaga
     3901 aataaagaaa ttgaaaaagc aaaaagaaaa caagataaag aacgcaatcg tgcaatgtat
     3961 gaaaaaggaa cagtgtaagg agaatttatg gcttatgaag caagtttaat agaaaaaaaa
     4021 tggcaaaaaa tttgggatga aaatgaatat tttgagccaa aagatgattt aaatttgcct
     4081 aaaaaatata ttttatcgat gtttccttat cctagcggac gcattcacat ggggcatgta
     4141 agaaattata ctataggtga tgctttagca agatattatc gcaagatagg atttaatgtt
     4201 ttacatccta taggttttga tagctttggt atgcctgctg aaaacgcagc tattaaacat
     4261 aaaattcatc ctaagtcatg gacttatgaa aatatagctt atatgaaaaa agaacttttt
     4321 tctttaggtt tttctttttc taaaaaaaga atgcttgcta cttcagatcc actttataca
     4381 aaatttgagc aagaattttt tattaagatg tttgaaaaag gtttgattta cactaaagaa
     4441 gcaaatgtga attggtgtga gcaagatcaa acggttttgg ctaatgagca agttgaagac
     4501 ggaaaatgtt ggcgttgtgg tcatgaagtg gtgcagaaaa aaatgccagg ttattatgta
     4561 aaaatcactg cttatgctga ggaactttta aaagatttag aagaattaaa agataaatgg
     4621 cctaatcaag ttttaactat gcaagaaaat tggattggta aaagcgaagg tttggaattt
     4681 tctttaaatt tagacgaaga aagcaagcaa aaaactaaag aaagttcttt agaagttttt
     4741 actacaagag cagatacaat ttatggagtt tcgtatattg ctttagctcc agaacataaa
     4801 attgttcaaa atttgctttc gcaaaattta ttaaatcaag atgtattaaa taaaatcaaa
     4861 gctattcaaa atcaaagccc aagagaaaga caaagttctg aaaaagaagg ttatttttta
     4921 ggaatttatg ccattcatcc tttaagcgga gaaaaaattc ctttatgggt ggctaatttt
     4981 gtcttggctg attatggtag tggagcggtt atggctgttc cagctcatga tgaaagagat
     5041 tttgaatttg caacaaaata taatcttgcc atcaaacaag ttattcaaac tcaagaaaat
     5101 ttaccttata cgcaaaaatc aggaaaatta atccatagtc aagaatttga taatcttgat
     5161 tgtaatgagg caagattaaa aattatttct cagtttgaag ctaaaaatat aggaaaaagg
     5221 gttgtaaatt ttaaaattcg tgattggggt gtttcgcgtc aaagatattg gggtgcgcct
     5281 attcctatga ttaaatgtca aagctgtggt atagtacctc aaaaactaga aaatttacct
     5341 attactctgc ctgaagatgt gcaaattaca ggagagggca atccacttga taaacatcca
     5401 acttggaaaa attgtatttg tcccaaatgt ggcaaagagg ctcaaaaaga aagcgatact
     5461 ttagatactt tttttgaaag ttcttggtat tttgcacgtt ttgcaagtga tgagaaaact
     5521 tggcaggaaa aagctttaga tgaaaaaagt gtgaagtatt ggatgagtgt ggatcaatat
     5581 ataggtggta ttgaacatgc aatcttgcat ttactttatg cgagattttt ccaaaaagct
     5641 ttaagagact tgggttattt aacgcaaaat gaaccttttg atagactttt aactcagggt
     5701 atggtgttaa aagatggtgc taaaatgtca aaatcaaaag gcaatgttgt agatcctgat
     5761 gagattatag aaaaatacgg tgctgatacc gcaagacttt ttatactttt tgctgcgcct
     5821 ccggctaaag agcttgaatg gaatgatgat gctgttgaag gggcttatag atttatttgc
     5881 aaactttatg atagggcgca aaatgttaaa aaaggtgagc ttgtagaatt aaaacaagaa
     5941 aatttaaaca aagaagaaaa atatgcaaga ttaaaggtat atgaagcttt gaaaaaatct
     6001 tttgaagttt atcatcaaag ttttgctttc aatactttaa ttgcagcttg catggaagct
     6061 ttaaatgctt tagcgctttg taaaaacgaa gctttggagc aagaggcttt ttatattatt
     6121 ttaaatattt tagagcctat tattcctcat gtttgttttg agcttagcga ggagcttttt
     6181 aaatgtaaaa atttcaaaaa attagaactt aaagaagaga tttttgtaaa agatacttta
     6241 aatttagctg taagtattaa tggtaaaaaa agggctgaat ttgaaatttc aagtagtgcg
     6301 agcaaagaag aaattttagc ttttgcaaaa gaaaatactg ctaaatggct tgaaggtaag
     6361 agtatagtta aagaaattta tgtggaagga aagctagtta atctagtgat taaatgaaaa
     6421 agattttaat tttttgtata ggtttatttt taggtgcttg tggatatgtt cctacatcaa
     6481 aaatcgctaa taatattttc gatgagaagg tttatgttaa tgttgaatta agtcaacaag
     6541 acccaaaaaa tagtatctat gttgccgata ctttaaaaga aatggtaatt tcaaaattag
     6601 ggcgtaaact tgctttaaaa cacgaggcag atgatgtaat taatgttaaa atgaataatt
     6661 tagaatttat tcctttagct tatgataaaa atggctatgt tattagttat aaagctaaat
     6721 taaatttaga ttttaatgtt gtctttaaag atggttcaag tcaggctttt agtacaagtg
     6781 gaagttataa ttttgaaatt tctccaaata gtattattag tgattctgca aggtatgagg
     6841 ctattcgagc agcttcaagc gaggcatttg atgagtttat ttccgtaatt gctattaaag
     6901 ggcaaaaacg tgattccaaa tactaatgaa atagcaaagc aaactttaat tgcattaaaa
     6961 gaaagaaaac taaaaccaac tcctgaaaat tatacggaaa tttttgaaga attatcttta
     7021 aaatatggta tcacaagctc aaataaagct aaacttgaca aatacaaaac cttgctttta
     7081 ccgatttatc aacaagaatt aaattctaaa actataagaa gtttagaaga actaattagt
     7141 tttttaattt ctgttttaaa tagacaaagc ggaaaacaat ttagtgaatt ttttgatttt
     7201 ttatatacta tatctaaaac tttgcaaata agtaaggata aaaagataag agatttggct
     7261 aaggtgactt cgattagaat ttctaaaact atggatagtg aaagtattta cttgcttact
     7321 aaaaaatgga aagagcttga aagaaattac gatgaaaatg acttagaaga acaagctcgt
     7381 aaatatggca ttagtaaata tgatgattat gatagcgtga ttaaaaaact cttagttaaa
     7441 cttgaagagc gtagttatga gcactttagt gaattattat gcttgggttt aaatccttca
     7501 ttggtggaag atttaaaaat tcaaggtttt atacaaaatt taacacaaaa gccttttgtg
     7561 ataggtgaag aaaattttaa aaatgaacta atggaattta taaatcatcg tataatggtt
     7621 gataatatgt atgtccaaaa aaatttaaat ttttttaatg ataatctaaa aaaaatctat
     7681 gaattgcttg tcttacttaa
//
LOCUS       DAEBKH010000077         7627 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.077, whole genome shotgun sequence.
ACCESSION   DAEBKH010000077 DAEBKH010000000
VERSION     DAEBKH010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7627)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7627)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7627
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.077"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(115..609)
                     /locus_tag="KIL20_001123"
     CDS             complement(115..609)
                     /locus_tag="KIL20_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721154.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFVYAPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILSYIGDEKIKILGWAYIVSVFIECCLAYVFF
                     KGKI"
     gene            complement(606..1202)
                     /locus_tag="KIL20_001124"
     CDS             complement(606..1202)
                     /locus_tag="KIL20_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HBD2721155.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVTCKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRISIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKDSILVSNLNKFGLDSLEDIIIDQTLGLGK"
     gene            complement(1199..1660)
                     /locus_tag="KIL20_001125"
     CDS             complement(1199..1660)
                     /locus_tag="KIL20_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HBD2721156.1"
                     /translation="MVARQIILLLVCVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(1642..2157)
                     /locus_tag="KIL20_001126"
     CDS             complement(1642..2157)
                     /locus_tag="KIL20_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721157.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNTSTIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGANNVKIISQEVEYEPKNKVLYTNTDFKALINGSIINGNTLNYDVKNKILN
                     IQGVNAWLQDK"
     gene            complement(2148..2636)
                     /locus_tag="KIL20_001127"
     CDS             complement(2148..2636)
                     /locus_tag="KIL20_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HBD2721158.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIEILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKKGGKAAVAQMIEILVEKNHLEEEWNKL
                     WL"
     gene            complement(2642..3469)
                     /locus_tag="KIL20_001128"
     CDS             complement(2642..3469)
                     /locus_tag="KIL20_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HBD2721159.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGTKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFAGAFVVRE"
     gene            complement(3429..4547)
                     /locus_tag="KIL20_001129"
     CDS             complement(3429..4547)
                     /locus_tag="KIL20_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HBD2721160.1"
                     /translation="MKKNLLCFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVTPMIRKILSQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLATFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
     gene            complement(4547..5362)
                     /locus_tag="KIL20_001130"
     CDS             complement(4547..5362)
                     /locus_tag="KIL20_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HBD2721161.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAVGVHPYEIDNYDEKILRQYLYDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEDGFYFGIGGVLTFKNAKKLVEILPKIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQFVANKMCEVLNLSRKELLEICFNNSEKLFFKGY"
     gene            complement(5353..6597)
                     /gene="cbrR"
                     /locus_tag="KIL20_001131"
     CDS             complement(5353..6597)
                     /gene="cbrR"
                     /locus_tag="KIL20_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HBD2721162.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVILAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLIQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDHCLSYMDDKKFLSTYNVLDPVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLV
                     DKASKILSQAKDNGKDRVEVCS"
     gene            complement(6701..>7627)
                     /locus_tag="KIL20_001132"
     CDS             complement(6701..>7627)
                     /locus_tag="KIL20_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RecN"
                     /protein_id="HBD2721163.1"
                     /translation="ILKKKLSKKDKLEEAWSKTEHIFELEKVVIEALNLSEVDPSFFS
                     ECLNELRVICENQKMEDLDFDVETLLDRIENLSYLIKRYESIENALEVLKQKKHELEH
                     YENLSFEKKELEKKFQELKQKLEEKAQILTQARKKNLKKLEKCLNNYLKDLYMKDASL
                     TLKENEKISILGKDEIILDINLAHLKNLSSGELNRLRLAFIATECKILNAGKGILFLD
                     EIDANLSGKEAMSIAKVLEELSKFYQIFAISHLPQLSSKAHNHFLVEKNGEESKVKKL
                     DQEERIKELARMVSGELVSYEAIEFAKTLFKN"
BASE COUNT         2655 a         1362 c          824 g         2786 t
ORIGIN      
        1 ttgtttagca agctcttcat aatatacatt tgattttata ctcaaataat acacacgact
       61 taataaaaat ataaaaaaca atagtataaa tccaacaact aaacgcattc tcatttaaat
      121 tttaccttta aaaaacacat aagctaaaca acattctata aaaactgaaa caatatacgc
      181 ccatcctaaa attttaattt tttcatctcc aatataagac aatatcatat ccaaaaacaa
      241 aataatgccg taagcacaaa gcacaaaaac aacagggata aatttaccaa tttttaaatt
      301 tgtcttaatc caatctgcac aaagataata aaaaataaaa aatgccaacc aagatgaaaa
      361 aataaaaaaa ttataagtta tatcagtaaa aaataaaaaa aataaagaaa aataccatct
      421 aaaatcaagc tttgaaaaag ttctttctct ctcttctagt aagcaaaaca tataacagaa
      481 aaaaatccca taaagtaacg gagcatatac aaaagtcgaa ccaagaatct gatagattag
      541 aaaaaaaaat cctaaaaaga cataagctcc attaaatttt gctttataag cacttaaatt
      601 tcttctcatt taccaagacc taaagtttga tcgataataa tatcttctaa agaatcaagg
      661 ccaaatttat tcaaatttga aactaaaata gagtctttaa attcattttt taacttagct
      721 ttttcacttt gatttaattt atcgcatttg gtaaaaactt ttaaaatttt ttgatcaggt
      781 cgtaaaaatc ttttcaaata gtcatttaaa tttacatcga tctctaaatg agtatgtctt
      841 gagtcgatta aatgtataaa taactttatc gagattctta attttaaaaa ttcatctaag
      901 ttttgattcc atatttcttt taaattttta gaaacctttg cataaccaaa ccctggcaaa
      961 tcgataaaat tgatattaaa tttttcttca tttcttttac aagttacttc gaaaaaattt
     1021 ataagctgag tttttccagg agttgccgaa cttttggcta aatttttttg tttacacaaa
     1081 gaattgatta aagaactttt tccgacattg gaacgcccca aaaatgctac ttcactaaaa
     1141 tttgagctca aattctcatc aaatttcact aaagaagtga taaatttagc actaattatc
     1201 atttgtcttt aagatcaaat acaaaacgag caggtttttg atccttgctc tctactcgat
     1261 aaatattagc ttttctatcg actattattt tatcaccaaa aagtttttga ttgcttccaa
     1321 gctcatttat ataagcatgg ccattaatct cgtaagtatc tttaataaca ttataaataa
     1381 atttatctcc actaccttta taagttttac cttttaaaac aatcttaaac ctagcgtttt
     1441 gcattgcttc ataacgaata ggtttgcgat ttttatccgt ataaataatc aatttttcag
     1501 aatttaaaat atcatcaccc ctaattactt ctacatttcc actaagaata ctttcaccct
     1561 tattttcatc tgaataaaaa tttaaagctt ttacttcaat ttgagttgcc caagttacac
     1621 ttacacaaac taacaataaa attatttgtc ttgcaaccac gcgtttactc cttggatatt
     1681 taaaattttg ttttttacat catagtttaa agtatttccg ttaataatac ttccattaat
     1741 tagagcttta aaatcagtat ttgtatatag aactttattc ttaggttcgt attctacctc
     1801 ttgggaaata attttgacat tattagcacc tatataagta acatttcctt caaataaaac
     1861 cttgctcata tctttattaa aaaattctaa acgatttgca ctaagattaa aatctaaatt
     1921 taaagtaata aaatcattaa attcatctct atctgcatat ctcacccaag aatttgcctt
     1981 ataatatgcc ttaattgtac tagtattact ctcataagct ttcaaatttt tagcctcaat
     2041 atttttaaaa tttaaagcat tagtttgcaa attcaaagaa tatggatctt gcaaacttaa
     2101 aatcgtaaaa gtaattgtaa aaagagcaat taaaattcca aaaattttta tagccaaagc
     2161 ttattccatt cttcttctag atgatttttt tctactaaaa tttctatcat ctgtgctaca
     2221 gcagccttac cacctttttt gctaagcact atgtctacat ttaaatcttt atgaccatct
     2281 tttggcttaa aactaagtcc tacactttca agcaaagcct tatcgttaaa ataatcccca
     2341 atagccgcac actgagaaaa atctaaatta agtttttgta aaatttcttt tgcacaagct
     2401 aacttatcct tgatgccttg atataaaatt tctattttta aatctttagc tcttttttca
     2461 acacaaggac aatttctacc tgtaataata gcaatttttt taccaagctt tagccaagcc
     2521 tcgatagccg ctccatcttt tacatcaaat tctttaataa attctccatt agaagtataa
     2581 ataatcttcc catcagttaa acagccatct acatccaaaa aaatcaattc tgtcataatt
     2641 tctactctct tacaacaaat gcacctgcaa atgcaccact tgcagcaaaa tctcttgctt
     2701 catcttcact tctaaagcct gttaagaaaa cgcgatttaa cccatccact gagcttgtgc
     2761 gtatagtaga gctataagtt ctataagttt tatatcttgc tgctatcgtt tgtgctccag
     2821 ctgggttttt aaaggctcca atttgaacca tgaaatttcc accttcataa atttgtccat
     2881 tatttgcaat ctctccacta tttccatagt ttacattaga atgtacaata ttattacccg
     2941 aattacttga tccaaaccct ataacctcaa gccttactgg agctgttcct gaagcaatca
     3001 tatcaatttg actagcagct ccttttgata aatctataat acgattattt acaaaaggac
     3061 ctctatcatt cacacgaacg gtaacttgac gattgttatt tagattggtt acttttaaga
     3121 tggtattcat aggtaaagtt ttatgagccg cggttaaagc attttgatta taggtttcgc
     3181 cattagaggt tttcttgccg tgaaagcctg gcccatacca actcgcaata ccatcagcag
     3241 tttcgcctac tgctacaaca gtaggataat aagttttacc gttgatagta taaggcttca
     3301 ttgttccttt agtccctgaa gaactaggac tgcttttaaa atcatttgaa ggataataca
     3361 cttgagcatt atccaagcta gaaaaaaaac tagtgcctaa acaaccacta aaaaataaag
     3421 cccctagact aacggctgac aactttagtg taattgtttt tatttgcatt tttattctcc
     3481 ttgattggta taattaattt ttgattaatg ctaagatgat tttttgctat tttattgaat
     3541 tctcgaattt catcaacact tatattataa ttttttgcta ttttatataa agagtcacca
     3601 gacttaacgg tataagttct tgtcataggt atagttgtat caacctttgc aagtttttct
     3661 gctttaaaat ttttatcaaa aaatgctact ttattaagtg gtatatacat ataataccct
     3721 ttaccaggag gcgtaaaatt atgtttaaat tgtggattat atttcttaaa agttgcaaga
     3781 tccatattta aatttttagc tatttctttt aaagatgcag aagaaggcac atcaactttt
     3841 gcaaattcat tgcttaaagc ataattcatt aaagacgcat ctttatctag taaaaaatcc
     3901 ctatcattag ctaaaaaagc aagcgttaaa atctttctta taaaatttct agtttctaaa
     3961 gaaagatatt tcttatcagg gttcaataaa acacttaaat catcacttcc tgcttgcttg
     4021 atagcttgtc ttagcttgcc atttccgcaa ttataagcta aaagtgccaa ataccatttg
     4081 ccaaattctt cttttaactc ttttaaataa tttgtagcgg cataagttga cttgaccgga
     4141 tcacgccttt catcaacata agcatcgatt cttaaaccca aatttctagc tgttggttgc
     4201 ataaattgcc aaacccctac agccttggca ttagaaacac tatgagtttt caagcctgat
     4261 tcaaccatag ctagatacaa aatctcatca ggaacttcct gctgggataa aatttttctt
     4321 atcataggag taacttttga aaaattttgc atactatcta ttaaagtttg agcatgtttt
     4381 gattttatat cttgttgagt ttgcacaaaa atcaaatcac taataaaact tggattaata
     4441 tctaaatttc ttaaaacatt catttgtctt tcataaaatt caggagtatt aatttgtgca
     4501 aaaagaaaat taaaacatat taaaaaacac aataaatttt ttttcattaa taacctttaa
     4561 aaaataattt ttcagaattg ttaaaacaaa tttctagaag ctcttttctt gataaattca
     4621 atacttcaca cattttgttt gctacaaatt gagttaacaa aggttcattt cttttaccgc
     4681 gataaggctc tggagtaaga tatggagcat cagtttcaag tagtagtcta tcttttggaa
     4741 ttttaggtaa aatttcaact aatttcttag catttttaaa agttaaaact cccccaatac
     4801 caaaataaaa tccatcttca aaaagagtta gcaaatgttc gcttgcatta aagcagtgta
     4861 aaactcctcc tacaagatcc ttagaatacc catgtaaaat ctcataagta tcatgatttg
     4921 cttctcttga gtgaatgata acaggttttt taaattcaat agcaagttca agctgtgcga
     4981 taaaaatctt tttttgattt tctttttctt tttgaatttc ttcagcaaga tcacttttaa
     5041 aacggaaata atcaagccca cattcaccta cagctacaca cttttcatcg tataaatact
     5101 gccttaaaat tttctcatca taattatcaa tttcataagg atgcacccct actgcaaaaa
     5161 aaatattttt atatttatga gcaattgtag ctgcataggg caaatctttt atatcagcac
     5221 caggtatgat gattttctct ataccatttt taaaagcacg atttaaagtt tcatctaaat
     5281 catctttaaa tgcttcactg tctagatggc aatgtgtatc aacaatcctt aaaccatctt
     5341 gaaaatcaag atttaagaac atacttcaac tctatccttg ccattatctt ttgcttgaga
     5401 caatatttta cttgctttat caaccaaaga atcaatctta tctccacttt ttccaaaaac
     5461 cacgcctata gaagctgtaa aaaagacttc atctaaatta actaaaacac cagccttttt
     5521 tatatttact cgtatacgag aaaagatttt aatcgctctt tcttgggata tatttttaag
     5581 taaaatacaa attttttctg cactatatct acctacaaga tctcttcctt tagtttcatt
     5641 gactatttca ttagcacaga ttttaattac ttcatcacca acttcacgac cgtattcatc
     5701 gttaatcatt tgaagattat ctatatctaa gaaagcaaaa gcaaattcct cgtcttttgt
     5761 tgctatttcg ttaaaataat catctattcc atcgattaaa gcattataat ttttaacccc
     5821 agatacagga tctaaaacat tataagtgct taaaaatttt ttatcatcca tgtaagataa
     5881 acaatgatct aagcgacaat taaaactttc tttgcttaaa ggcttaaaca aatactcatt
     5941 aactccattt ttaaaagaat tcgcttcaaa tgaatcatta tgatccccca aaagaatcac
     6001 acctaattca tcatcactaa aacgttctct tacttgaatc aaaagctcaa aaccgctaat
     6061 tactggcata ttgacatctg ctataataag cttaacatca ttattatcat ttaaataact
     6121 cattgcttct tcaccatgag ctgcagctaa aacattaaat tgtctttgag taagtatttt
     6181 tttaatttca ttacgttcag gtagcttgct catagctaaa atcactttag tttttgcata
     6241 ttgattaagt tttacaatag aactaataat ctcatcaatg caagtttcac tttctttaaa
     6301 aatataatct aatatatctt tatccataaa tttttcttta gtagccttat caccactagc
     6361 tgtaagaaca atagcaggaa ttttcttttc aataacataa tccacaactt caccatttgg
     6421 ggcatctggc aaacataaat ccacaaaagc taaaaaataa tcattattca ttaattcctt
     6481 agcttcggca aaaccaaaag caatatctac ctcataatct aaagtcattt gaattttttt
     6541 agctaaaagt ttgccgagca ttttattgtc atcaataatt aaaattttct tattcatagt
     6601 gtgtaaaata cctttatatc taaaattttt aatatatttg tttcaaaaga aaggaaattt
     6661 tatagttgta tattttaaca tagcaaaata aaaaatccgc ttaattctta aacaaggtct
     6721 tagcaaattc gattgcttca taactaacaa gctctccact taccatccta gcaagctctt
     6781 taattctttc ttcttgatca agctttttta ccttactttc ttcgccattt ttttcaacta
     6841 aaaaatgatt atgcgcctta gaggaaagtt gaggcaaatg agaaatagca aaaatttgat
     6901 aaaacttaga aagctcctct aaaaccttgg ctatactcat agcctctttt ccgcttaaat
     6961 ttgcatcaat ttcatctaaa aataatatcc ctttacctgc atttaaaatt ttacattctg
     7021 tggctataaa agcaagtctt aagcgattta attcacccga acttaaattt tttaaatgag
     7081 ctaaattaat atctagtatt atctcatctt tacctaaaat tgaaattttt tcattttctt
     7141 taagtgtcaa acttgcgtct ttcatataaa gatctttaag ataattattt aaacattttt
     7201 ctaatttttt aaggtttttc tttcttgctt gagttaaaat ttgtgctttt tcttctaatt
     7261 tttgttttaa ttcttgaaat tttttttcaa gttctttttt ttcaaaactt aaattttcat
     7321 aatgttctag ttcatgtttt ttttgtttta aaacttctaa agcattttct atgctttcat
     7381 aacgcttgat gagataggat aaattttcaa tgcgatctaa aagtgtctcc acatcaaaat
     7441 ccaaatcttc cattttttga ttttcgcaaa tcacacgcaa ttcatttaaa cattcactaa
     7501 aaaaactcgg atcaacttcg cttaaattta aagcttcaat aacaactttt tcaagctcaa
     7561 aaatatgctc tgtcttactc caagcttctt ctaatttatc ttttttagaa agcttttttt
     7621 taagtat
//
LOCUS       DAEBKH010000078         7513 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.078, whole genome shotgun sequence.
ACCESSION   DAEBKH010000078 DAEBKH010000000
VERSION     DAEBKH010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7513
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.078"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(1..2040)
                     /locus_tag="KIL20_001133"
                     /pseudo
     CDS             complement(1..2040)
                     /locus_tag="KIL20_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344446.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit M"
     gene            complement(2049..4259)
                     /locus_tag="KIL20_001134"
     CDS             complement(2049..4259)
                     /locus_tag="KIL20_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HBD2721164.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSDLHFKR
                     IHELCEVEFPTMPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSSGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKANESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSRKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DIKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTPKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGTGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVKL"
     gene            complement(4249..4599)
                     /locus_tag="KIL20_001135"
     CDS             complement(4249..4599)
                     /locus_tag="KIL20_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721165.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKLFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            complement(4592..5890)
                     /locus_tag="KIL20_001136"
     CDS             complement(4592..5890)
                     /locus_tag="KIL20_001136"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HBD2721166.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLDDASVIIGAILKEFDSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYSNEVSKLHHAYAEFLDTAKIRVINAEDEFLKNYKNE
                     STKLYPSKDIKNCTMRIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYAKLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYAAGEEPIGLDLKAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            complement(5954..7462)
                     /locus_tag="KIL20_001137"
     CDS             complement(5954..7462)
                     /locus_tag="KIL20_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HBD2721167.1"
                     /translation="MLIFGVFVVFLNLKILNLKLKPVNLRLFPLIALNLILIIVYVVA
                     LRGPFKHVAINVQNYSFSEYSVVNDTMLNPIMAFSWALKQYKEEAALKAITSLKAQEL
                     KEKLFDYLHQSPINLKAEKNHPSVFVNLMESFGLNLADFANTEHNFLGSLDKHFKQDF
                     LFKRFLSSSNGTIPSFANLFFVSPFSNISTSKFQKTYLDLTPIAIYKKAGYKVIFVSA
                     GNGSWQNIKNYLGILGVDEIIDENILMKEYNGAKDSENGYGVADEFLYKKVYDLLQKN
                     PHNTLIIALTISNHPPYKIPQNDLPKLENIPQTLLNMLPYEKDKQDNIIKAYTYANNE
                     FGKFLDKVKQSPFKNSVIIAATGDHRVREMSMDLNSQKAFAYSVPFYLYIPKDLQDNI
                     YYDKDRVGSHKDIFPTLYALSLNNVKYLSVGGRNMLARSSDEKLEFGINDAVWIDKKG
                     IYSGGKGYYFESNDTLKDMNKAFNLDIYTKDFDKFYRELNLYQLAERLGISK"
BASE COUNT         2486 a         1282 c          921 g         2824 t
ORIGIN      
        1 tttcattgtc ttttaaattt tcagcttcta tgcgttcttt aatcaaacta taatcttgag
       61 aaataagatg attttcttgt ttaaaagttt cttttttgcg taaaaataaa ataatcgtat
      121 ttgtccctgt tgctccaaat gtttgattac ctagctctac aatggcaata aaatcaaaat
      181 tttgaaacaa tatttctctt gtatttttat aaatagaatc cttatttaaa atagaacttg
      241 gcaaaataat ggcagcttta gcattatcat ttaaaatttg atttgctcgc tcgcaaaaaa
      301 agcattcgat agaattattt gtttctatgt ttatatcatc gttaaaaagt ttataggtat
      361 tcttagattt atcacttaaa gtttctaaaa atccttttac agaataaggc ggatttgcta
      421 taagcaaatc aaaactattt gattctattt gtggttttgc tttttctcct tctaaattat
      481 ttgtatttgc taattcaaaa gaagcaagtg catcagcata taaaatattg atttcatttt
      541 gcccatacat tgcacttgat accttagaaa ccttacttaa gcgatactct ttttcaatac
      601 cataaatatt tttataatgc tctttaagct catcttctgt tagataacgc ttaagctcat
      661 tggcataggt gtttaaaaaa tgtccagcac cacaagcata atcaatcacc cttaaagctt
      721 tagagctttt gcttaacatt tcttgaagcg gtaaagaata cataataaat tcacaaattt
      781 gaataggggt aaaaaactgc ccttcatctt gcttcatacc tttttgtaaa aaaagttcaa
      841 aaagattgcc taaaaattga tttgtagagt tttgagtaag cttgtaattt gcaaaaagct
      901 ctactatttc ttttaataca agtgcatttt ttaagaataa ttctttatta tgcacttcta
      961 aaaatgcaaa atcattattt gaataaaatt ttaattcttt gatgtaattt tgcattactt
     1021 cttttaaagt ttttatcttt aattgcttaa agtctttttc tatatcttca ttagatacaa
     1081 aggtaatttt ctctcctaag aattctttca tagcttcttt ataaagccac attaatctat
     1141 cttgcatatt tgcataagta tctgccatta caccaaaata tccaaatttg agattgtttt
     1201 tattaaaagt ttcatcataa attttgcaaa gaaaaatatt tacaagttta tcaaaggcat
     1261 tttccttgcc tgatatatta tgcttgcgta aaatttttgc aaattcgtga tatttgcctt
     1321 cttctttaag ttctttaaga ttatcaaaag ttggagtaat ttctaaaatt ttataggtat
     1381 tgacatttgc ttcaaaaata ccttgtttaa aatattgcag ttcataactt tctttccaag
     1441 ttttaaaaag ttctatattg ttattagatt ttttataaga attttgcaat tccttttctt
     1501 ttagatattc ttcgttatcg taagcttgta tgatgtaatt tttatattct aacttatcgc
     1561 taaaatcact tgtataaaga caaagatatt ttacaccttt ttcttgctga aaataagaaa
     1621 aaggtgtccg ccatcttctt gcattctatt ccattctttt ataaattcac tatttttaga
     1681 atctgtggtt ttacattcta taatcaaaca aggattgttt tcattatcct ttactaaaat
     1741 atcagcctta ccaccttttt tatccctgcc aagattccat tttggctcta actctaaatg
     1801 ttcagcctta taaccttttt ctaaaagtct atgcacacat tcaaaaacta caaaattttc
     1861 agggtgtgaa aaattagaag tagttttatc gtgaattttt atttcttttg gataattaat
     1921 actttggttt ttataatcta ttaaaagagt gtaattattg attgttttta cataattttc
     1981 atttttattt ttaaagccta agttttctaa aacttgtttt aaattatctt ttgcaatcat
     2041 ttatttcctt ataattttac caccttagca ccaaaaccac cttgattgat cggtgcgtca
     2101 ttaaagccct tgacactttt atgagttttc aaaaactctc ttacagcaaa ggcaagcttt
     2161 cctgttccta taccatggta aactaaaact tcatcaaagc ctgcaagcaa agcatctgaa
     2221 ataaatttat caagccttga aatagcttca tcactcctaa gcccgtgcaa atccaagcta
     2281 acgctaagat tagtcggttt tgccacacta atgcttgttt ttggacttat tttaggtgta
     2341 ggagtgcttt ttttaagcaa ttttaaaggc acacgaagtt tgatcccatc actttcaacc
     2401 atagcatcgt ttttagaaat gcttatgatt ttacccttaa ttttttcata ttttacaaaa
     2461 tcccccacac gcaattcttc gttttgctcc atacttggca agatgatttc ttttttaagt
     2521 tcattggctt tattaagact tctttgcttg tcttttatat ctttaagctg tatggttttt
     2581 ttagcttctt ctatggcttt gtgaaattta aattctaaat ttctcaaact cgtacgaaat
     2641 tcttgttcat ttttttcttt ttgctctttt aaggaaagta aaatttcatc gactttttgc
     2701 tcttttttct cgacattttc aagcttagct tttagttcta attcaagatt aatattttta
     2761 cccacaagct cttctaaatt ttctttatcc tcgccataaa gctttttagc ctcgctaact
     2821 aaattcggcg gaatctgata acgcaaagcg gtttcaaagg cataagattt tcctatagta
     2881 ccttttaaaa actcatattt tgggcgtgaa agctcttcat catataaagc agcaatgagt
     2941 tcaacttgct cattctttgc taaaagcatg gcaaggcgtt tgtggtgtgt agtaatgatg
     3001 attttaagat tattagctat gagttttgaa attaacacac tatacaaaca agccgcttct
     3061 tcaaaatctg ttccaagctc tatttcatcg atacctaaaa gcaaattttt cctagaaaaa
     3121 agtctagaaa aatgcaacat tcttcctgca aaggttgaaa tgtcgttttt aacattttgc
     3181 ggatcttcta tgatggcatc aaattcttta aaagtaccga ttttactttc attggcttta
     3241 atatgcatag gcaaaagatg tttagctaaa aatgctgcgc ttagcatgga ttttaaaagc
     3301 atggattttc cgcctgcatt tacccctgtg atgattaaaa cttgtttttt aaattccaaa
     3361 ctcacgcttt ttggattttt taaggcagga tgagcgaaat ttttaagcac taaatccgta
     3421 ctttgatcac acaaaacaaa ttcaaaatcc ctttttttag caagcaaaac cctagcacta
     3481 taatgatcaa aaagatcaaa ggctgtattg ataaatttta aaaaaggtag attttttgct
     3541 aaaaaagctg agaaattttt agcgtattca taataaattt cttctttttg atttttgatt
     3601 ttttctatat cattttgcaa attttcaaca cttaaaggca cgatataaaa gccaccgcca
     3661 ctacttctac ctatgatttt tgctttaata gcgtgattaa acccacctct tacaagcaag
     3721 gcttcaagat tgtttataag atggatttgt gtatcgataa gataaggcat taaagctttt
     3781 gtatagcaaa atttcttaaa ctcagctatt atgctttcgt ttttcaatct taaagcggca
     3841 ttaagattta caagtctttc atctaaactt tcttttaatt ctcctttctc atcgaaattc
     3901 aaacaaagct ccaaagcccc gctaacaaat tctatctttt gtagccaaga gtctaaattt
     3961 gttcctagtt ttattttttt taacttttca aaataacgaa aaatttttac aaattcaaaa
     4021 atttcatcta aatgcaaaat tccttgctta cttaaatgta ctaaggcttt atcaagattg
     4081 ctaagctctg gcatagtagg aaattccacc tcgcaaagct catgtatacg tttaaaatga
     4141 agatcagaat ctccttgcaa aaaaatctcc ttatctcttg caaaaagagc tttaaactct
     4201 tctaaatagc tgtttaaatc aagctttgag atcaattctt cttttgtatc attcatcatt
     4261 taacctacaa tctttaatat ctatgattaa agaattaaaa ctttgattat tatcctttga
     4321 aataaaactt cctgtaccaa attcataatt aaaatacgcc ttagaaacat tgatatcttt
     4381 acataaaata tttttatttt gattaaaagc tacgataata tctgttctta aatgactttt
     4441 ttgtgtgttt tcaaattcaa aaaatactgc taaaacaata aaaatcacaa gcaaaatacc
     4501 aaaaaaaagt ttagtttttt tgcctaattt ttcacgcaaa gcaaaagtga ttaaggctaa
     4561 aattaaaata attaaaaaat ataaaaaaaa cctactcatt tttttgcctt aatttattac
     4621 tgatatctcc tgcaccaaaa cctataataa gcccttcttc aaaaacttgc cccttagaag
     4681 ccaccaaaaa tttaccctct cttttgatat cttctacaaa taaagcctta ggaaaaaccg
     4741 cttttaaatc aagccctata ggctcttctc ctgcagcata aacaggtaaa attataagct
     4801 cgtctacacc ttcaaaagcc tttgcaaatt cctttaaatt tgcagccaaa cgcgtgtagc
     4861 ggtggggttc aaagatagct gtgattttct tatatccgcc taattttgcg tattcttgtg
     4921 ctgcacttaa agtcgctttt atttcggtgg gatgatgacc ataatcatcg attaaaacca
     4981 aattttcatc agcatgtaaa atatcaaaac gctttttaat accttgataa tttttaagcc
     5041 tagttcttat cgtttctata tctaagaaat ttaaagccgc caaaatcgcc aaagacgcat
     5101 caagggctaa atgatatccc atgccaaaaa ccttaaattc acctaaatct ttcaactcaa
     5161 agcttgtaaa aggtttgaaa ttttctatac gcatggtgca gtttttgata tctttgctcg
     5221 gataaagctt ggttgactca tttttataat ttttcaaaaa ctcatcttca gcattaatca
     5281 cgcgaatttt agccgtatct aaaaactccg cataagcatg atggagtttt gaaacttcat
     5341 tgctataatg atctaaatgc tctgcttctg cattagtaac tatagccaaa taaggatttg
     5401 aatttaaaaa agaactatcg ctctcatcag cttcaaaaac aaggttttgg ctttctttat
     5461 aaatcatatt tgaatcaaat tcttttaaaa tcgctccgat gatcacagaa gcatcatcaa
     5521 gcaaagaagc caaaatactt gaagttgtgc tttttccatg tgctcctgca actgcaaaaa
     5581 cgcgcttatc ttctaagata agaggtaagg cctccttgcg tgaaaggcat ttaatgccta
     5641 attctttagc gtgtttaaat tcaggatttt cttctttgat agcagcagaa taaataacta
     5701 aatctttgtt taaaatattg tctttatgat gagggatact gaccttaacc ccttcttttt
     5761 ctagttcttt agtgatttta ctctctttaa gatcacttcc gctaatttta aaaccttttt
     5821 cttttaaaaa tcttgctaaa gcggaaattc ctataccgcc tatgccgata aaatggatat
     5881 tttgcatcat ttaaaccttt atactttaaa ggctaaattt tagcactttt ttactaaaaa
     5941 gaaaatataa atcctatttt gaaatgccta aacgctcggc taattgatat aaatttaact
     6001 ctctataaaa tttatcaaag tctttagtat aaatatcaag attaaaagct ttattcatat
     6061 cttttaaagt atcattactt tcaaaatagt accctttacc gccactataa ataccttttt
     6121 tatcaatcca tacagcatcg ttgatcccaa attctaattt ctcatcactt gatcttgcta
     6181 acatatttct tccgcctacg cttaaatact tgacattatt taaacttaaa gcataaagag
     6241 ttggaaaaat atctttatga gatcctacac gatctttatc ataataaata ttatcttgca
     6301 aatccttagg aatataaaga taaaaaggta cactataagc aaaagctttt tgggaattta
     6361 aatccatact catttcgcgt actctatgat ctccagttgc tgctataata acactattct
     6421 taaatggact ttgttttact ttatctagaa attttccaaa ttcattattt gcataagtat
     6481 aagctttgat aatattatct tgtttatctt tttcataagg aagcatatta agcaaagttt
     6541 gtggaatgtt ttctaatttt ggcaaatcat tttgtggaat tttataaggt ggatgattgg
     6601 atatggtaag agcaattata agggtgttgt gtggattttt ttgaagcaag tcataaactt
     6661 ttttatataa aaactcatca gctactccat aaccattttc actatctttt gctccattat
     6721 actctttcat taaaatattt tcatctataa tctcatctac tcccaaaata ccgagataat
     6781 ttttaatatt ttgccaagat ccattacctg cacttacaaa aatcacctta tatcctgctt
     6841 tcttataaat agcaataggt gttaaatcca aataagtttt ctgaaatttg cttgtagaaa
     6901 tattagaaaa tggacttaca aaaaataagt ttgcaaaact tggtatagtt ccattactag
     6961 aactcaaaaa acgtttgaat aaaaaatctt gcttaaaatg tttatctaac gaacccaaaa
     7021 aattatgttc tgtatttgca aaatcagcca aattaagccc aaaactttcc attaagttaa
     7081 caaatacact aggatgattc ttttcagctt ttagatttat aggactttga tgcaaataat
     7141 caaaaagttt ttctttaagt tcttgtgctt ttaaagatgt gatagccttc aaagctgctt
     7201 cttctttata ttgttttaaa gcccaagaaa atgccataat tggatttaac attgtatcat
     7261 ttacaacact atattcgcta aaagaataat tttgcacatt tatagccaca tgcttaaatg
     7321 gaccccttaa ggctacaaca taaacaataa ttaatattaa atttaaagct atcaagggaa
     7381 ataatcttaa attaacaggt tttagcttta aatttaatat tttcaaattt aaaaaaacta
     7441 caaaaactcc aaaaatcaac attaaagcta aaatttttaa aattggataa tcatgataaa
     7501 taatacttaa aat
//
LOCUS       DAEBKH010000079         7443 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.079, whole genome shotgun sequence.
ACCESSION   DAEBKH010000079 DAEBKH010000000
VERSION     DAEBKH010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7443
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.079"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..1814
                     /locus_tag="KIL20_001138"
     CDS             <1..1814
                     /locus_tag="KIL20_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HBD2721168.1"
                     /translation="LLEKNIQALLSGVNEPLGNKLLNFIQNKTCSRFNIDENLNIYDK
                     THNVFMYENLEEELNFFYQSILEKTHRYPFICIYGIGNALLIKNLSKHYKHLFVFESE
                     IELFILALSTIDLSEELKVYKVVLFDCVAKDLEIQIAMIFDQQSILEYLSLYEMFISS
                     HYYLKYYETSILSLNELCIKSASVAIRNADIACFLPLLTHGQFLQNIPSMLESIPFQR
                     ILSERKNKFENAIVVSAGPSLAKQLPLLKAYQDKAVIFCADGALSMLEKEDIVPDYVT
                     NLDYSDWPIKFFQNKENLKQSIIALECATHPNVVHSLKAENCMIVLRNKALYQRFNLN
                     DFGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDEEGNSHSKGFSYGEQFSGEKT
                     VPTLKTQAYGGKGEVLTHIAWNDYRIKLEYLFACNEQKTKFYNATEGGARINFTEELS
                     FKECCEKLLTKEKPKFDIPKSLTKNRSDKLLAKFKEKIQKDQENAKRFLDDALALKQI
                     LENILSKDFLLPLEFLEKVYQNIENFNHSLDEDEFIQDEVLRGAFAYRGKMIADVLKL
                     HIKDKIHFITDYIKAYHEWLLYFIEKLEQKYKSLSKV"
     gene            1911..3629
                     /locus_tag="KIL20_001139"
     CDS             1911..3629
                     /locus_tag="KIL20_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin A"
                     /protein_id="HBD2721169.1"
                     /translation="MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKAT
                     IGATQSSKIGLTRFETGGRISSSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGALA
                     DEINKNADKTGVRATFTVETRGIAAVRAGTTSDDFAINGVKIGKVDYKDGDSNGALVA
                     AINSVKDTTGVEASIDANGQLLLSSREGRGIKIEGNIGGGAFINADMKENYGRLSLVK
                     NDGKDILISGSNLSSAGFGATQFISQASVSLRESKGQIDANIADAMGFGSANKGFTLG
                     GYSSVSAYMSSAGSGFSSGSGYSVGSGKNYSTGFANAIAISAASQLSAVYNVSAGSGF
                     SSGSNLSQFATMKTTAFGVKDETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQN
                     QVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANSVQQN
                     VLRLLQ"
     gene            3774..5492
                     /locus_tag="KIL20_001140"
     CDS             3774..5492
                     /locus_tag="KIL20_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin A"
                     /protein_id="HBD2721170.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKAT
                     IGATQSSKIGLTRFETGGRISSSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGALA
                     EEINKSADKTGVRATFTVETRGIAAVRAGTTSDTFAINGVTIGQVAYEDGDANGALVA
                     AINSVKDTTGVEASIDANGQLLLSSREGRGIKIEGNIGGGAFINADMKENYGRLSLVK
                     NDGKDILISGSNLSSAGFGATQFISQASVSLRESKGRFDANIADAMGFGSANKGFTLG
                     GYSSVSAYMSSAGSGFSSGSGYSVGSGKNYSTGFANAIAISAASQLSAVYNVSAGSGF
                     SSGSNLSQFATMKTTAFGVKDETAGVTTLKGAMAVMDIAETATTNLDQIRADIGSVQN
                     QLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYAMSQANAVQQN
                     VLKLLQ"
     gene            complement(5524..7410)
                     /locus_tag="KIL20_001141"
     CDS             complement(5524..7410)
                     /locus_tag="KIL20_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HBD2721171.1"
                     /translation="MREENNFNKNLKALSGFEYNNLRKKLKDLKELREFTFTQGKDNL
                     DINIIKKRNLKKMYQDPIKELEKNLEYFKDFARYPVLFFYGFGNGILYKILLQNQALK
                     RIIIFEKELELIFLALNFIDFSKDLSLGRLIILYHDDINLPKMDKVFRLIGDLFYRSY
                     NLHIANDFYEHYKEDILKLNKLNMQIIKNHNLMRGNDPKDAMQGIEQFVYNLPQMITH
                     SSYKELLSKRKGISDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIK
                     PDYVCMLERDEIVAECFNNDFKDFDKDIIFLVASLVHKKTISYLEKNKRKYILIIKGQ
                     PFARYLELDDYGYINAGMSVSHMAYELAENLGHNNIILIGQDLAYAKDGQTHSQGFIH
                     ANLHNGDYERDLDRFSTTAYGGNGKVQSSEIWTLFRQIFENFIAFSKSKTYNCTEGGA
                     RIESAIEKPFKELCENLLENKKDKKFKKLQVLNTKEQVKLGLKIYQKIKKNMNLSLNF
                     KKECKKVQKQIHNLTHGKNKLSLEQINQNIDKIKEKLSNKKYLFLQEILGPTLHHEQS
                     ILTPLYLKDIKDESDKQNKLFAWVYAHEALIENIIELLEAQDKRLKIAILPLQDFLEK
                     KKAL"
BASE COUNT         2525 a         1100 c         1292 g         2526 t
ORIGIN      
        1 atttgctaga aaaaaacata caagctttat taagtggggt aaatgaaccc ttaggaaata
       61 aacttttaaa tttcatacaa aataaaactt gttctcgttt taatatagat gaaaatttaa
      121 atatctatga taaaactcat aatgttttca tgtatgaaaa cttagaagaa gaattaaatt
      181 ttttctatca aagtatttta gaaaaaactc atagatatcc ttttatatgt atttatggta
      241 taggcaatgc tttactgatt aaaaatttat ccaaacacta taaacatctt tttgtattcg
      301 aaagtgaaat agaacttttt attctagctt taagcacgat agatttgagt gaagagttga
      361 aagtttataa ggttgtgtta tttgactgtg ttgcaaagga tttagaaatt caaattgcta
      421 tgatttttga tcagcaaagt attttagagt atctaagttt atatgaaatg tttattagct
      481 cgcattatta tcttaaatac tatgaaactt ctattttatc tttaaatgaa ctttgtatta
      541 aaagtgcaag tgtagcaata aggaatgcag atattgcttg ttttttacct ttgctaacac
      601 atggacagtt tttacaaaac atcccttcta tgcttgagag cattcctttt caaagaattt
      661 taagtgaaag aaaaaacaaa ttcgaaaatg ctatagtagt ttctgcagga ccaagcttag
      721 ctaaacaact tcctttactt aaagcttatc aagataaagc agtgatattt tgtgctgatg
      781 gagctttaag tatgcttgag aaagaagaca tagtgcctga ttatgttacc aatttagact
      841 atagtgattg gccaataaaa ttttttcaaa ataaagaaaa tttaaaacaa agcattatcg
      901 ctcttgaatg tgccacgcat cctaatgtcg tgcatagttt aaaggctgaa aattgtatga
      961 ttgttttaag aaacaaagcc ctttatcaac gcttcaatct taatgacttt ggttatatag
     1021 atacaggtac tcatgtaagt catttttctt atactttagc tttagcttta ggatttaaaa
     1081 atatcatcat gataggacaa gatttagctt ttgatgaaga aggaaattct cattcaaaag
     1141 gatttagtta tggcgagcaa tttagcggag aaaaaactgt gcctacttta aaaactcaag
     1201 cctatggagg taaaggagaa gttttaaccc atattgcttg gaatgattat cgtataaaac
     1261 ttgaatatct ttttgcttgc aatgaacaaa agactaaatt ttataatgct accgaaggtg
     1321 gagcaaggat taatttcact gaagaacttt cctttaaaga atgttgtgaa aaactcctta
     1381 caaaagaaaa acccaaattt gatattccaa aaagtttaac taaaaataga agtgataaac
     1441 tcctagctaa attcaaagaa aaaatacaaa aagatcaaga aaatgccaaa agatttttag
     1501 acgatgcctt agctttaaaa caaattttag aaaatatact cagtaaagat tttcttttgc
     1561 ctttagaatt tttagaaaaa gtctatcaaa atatagaaaa tttcaatcac tctttagatg
     1621 aagatgagtt tatacaggat gaagttttaa gaggcgcttt tgcttatcgt ggaaaaatga
     1681 ttgctgatgt attaaaactt catatcaaag ataaaataca ttttatcaca gactatatta
     1741 aagcttacca tgaatggttg ctttatttta tagaaaaact agagcaaaaa tacaagtctt
     1801 tgtcaaaagt atgaaatttt attactaaag tataaaatat ttttttgatt gcacgatatg
     1861 gtatttaaca agttcatgga tgagcttgaa attttttaaa aggatttaaa atgggatttc
     1921 gtattaacac caatgttgca gctttaaatg caaaagcaaa cgctgattta aatagtaaaa
     1981 gtttagatgc ttctttaagc agacttagtt caggtcttag aatcaactcc gcagcagatg
     2041 atgcttcagg gatggcgata gcagatagtt taagatctca agctaatact ttaggtcaag
     2101 ctatatctaa tggtaacgat gctttaggta tcttacaaac tgctgataag gctatggatg
     2161 agcaacttaa aatcttagat acaatcaaaa ctaaggcaac tcaagcggct caagatggac
     2221 aaagtttaaa aacaagaacc atgcttcaag cagatatcaa ccgtttaatg gaagaacttg
     2281 acaatatcgc aaatactact tcatttaacg gtaaacaact tttaagtggg aattttatca
     2341 atcaagaatt tcaaatcggt gcaagttcaa atcaaactgt aaaagctact ataggagcaa
     2401 ctcaatcttc taagataggt ttaacacgct ttgaaacagg aggaagaatt tcatctagtg
     2461 gcgaagtaca atttactctt aaaaattaca atggtataga tgattttcag tttcaaaaag
     2521 ttgtgatttc aacttcagtt ggaacaggac ttggagcttt agcagatgag atcaataaaa
     2581 atgctgataa aacaggtgtt agagctactt ttacagtaga aactagaggt atagctgcag
     2641 ttagagcagg aactacttca gatgattttg ctatcaatgg ggtaaaaatc ggtaaagtag
     2701 attacaaaga tggcgatagc aacggtgctt tggttgctgc aatcaattcg gttaaagata
     2761 ccactggagt tgaagcttca atcgatgcta atggacaact tttgcttagc tcaagagaag
     2821 gaagagggat taaaatcgaa ggtaatatag gtggaggtgc ctttatcaat gctgatatga
     2881 aagaaaacta tggccgcttg tctttagtta aaaatgatgg taaagatatt ttaatcagcg
     2941 gtagcaatct ttcttctgca ggctttggtg caactcaatt tatctctcag gcttctgttt
     3001 ctttaagaga atcaaaagga caaattgatg ctaatatcgc tgatgctatg ggatttggtt
     3061 ctgcaaacaa aggatttacg ttaggtggtt attcttctgt tagtgcttat atgagtagtg
     3121 caggaagtgg attttcttca ggttctggtt attctgtggg tagcggtaaa aattattcca
     3181 caggttttgc aaacgctata gctatttcag ctgcttcgca actttctgcg gtatataatg
     3241 tttctgcagg ctcaggtttt tcatcaggat caaatctttc tcagtttgca actatgaaaa
     3301 caactgcttt tggagtaaaa gatgaaacag caggtgttac cacacttaaa ggtgctatgg
     3361 cagtgatgga tatagctgaa acagctataa caaatcttga tcaaatcaga gccgacattg
     3421 gttcggtgca aaatcaagtt acatcaacga taaacaacat cactgttact caagtaaacg
     3481 ttaaagcagc tgagtcacaa atccgtgatg tagactttgc ggctgagagt gcaaactact
     3541 ctaaagcaaa tatcttagct caaagtggct cttatgctat ggcgcaagct aattctgttc
     3601 aacaaaatgt tttaagattg ctacagtagt ttaaaaagct gtaatatata caaatccaag
     3661 cctagtttaa tactaggctt ttttatttta agctctagaa tttttaatta aactaaaact
     3721 tggaacactt tttgctttaa tcttttcgat gcaatatttt gaaaggattt aaaatgggtt
     3781 ttaggataaa caccaacatc ggtgcattaa atgcacatgc aaattcagtt gttaatgcta
     3841 gagaactgga taagtcttta agcagactta gttcaggtct tagaatcaac tccgcagcag
     3901 atgatgcttc agggatggcg atagcagatt ctttgcgttc acaagcagcg actttaggtc
     3961 aagctatcaa caatggtaat gatgctatag gtatcttaca aactgctgat aaggctatgg
     4021 atgagcaact taaaatctta gataccatta aaactaaggc aactcaagcg gctcaagatg
     4081 gacaaagttt aaaaacaaga accatgcttc aagcagatat caaccgttta atggaagaac
     4141 ttgacaatat cgcaaatact acttcattta acggtaaaca acttttaagt gggaatttta
     4201 tcaatcaaga atttcaaatc ggtgcaagtt caaatcaaac tgtaaaagct actataggag
     4261 caactcaatc ttctaagata ggtttaacac gctttgaaac aggaggaaga atttcatcta
     4321 gtggcgaagt acaatttact cttaaaaatt acaatggtat agatgatttt cagtttcaaa
     4381 aagttgtgat ttcaacttca gttggaacag gacttggagc tttagcagaa gagatcaata
     4441 aaagtgctga taaaacaggt gttagagcta cttttacagt agaaactaga ggtatagctg
     4501 cagttagagc aggaactact tcagatactt ttgctatcaa tggggtaact ataggtcaag
     4561 tagcctatga agatggtgat gctaatggag ccttagttgc tgcaatcaat tcggttaaag
     4621 ataccactgg agttgaagct tcaatcgatg ctaatggaca acttttgctt agctcaagag
     4681 aaggaagagg gattaaaatc gaaggtaata taggtggagg tgcctttatc aatgctgata
     4741 tgaaagaaaa ctatggccgc ttgtctttag ttaaaaatga tggtaaagat attttaatca
     4801 gcggtagcaa tctttcttct gcaggctttg gtgcaactca atttatctct caggcttctg
     4861 tttctttaag agaatcaaaa ggaagatttg atgctaatat cgctgatgct atgggatttg
     4921 gttctgcaaa caaaggattt acgttaggtg gttattcttc tgttagtgct tatatgagta
     4981 gtgcaggaag tggattttct tcaggttctg gttattctgt gggtagcggt aaaaattatt
     5041 ccacaggttt tgcaaacgct atagctattt cagctgcttc gcaactttct gcggtatata
     5101 atgtttctgc aggctcaggt ttttcatcag gatcaaatct ttctcagttt gcaactatga
     5161 aaacaactgc ttttggagta aaagatgaaa cagcaggtgt taccacactt aaaggtgcta
     5221 tggcagtgat ggatatagct gaaacagcca caacaaatct tgatcaaatc agagccgaca
     5281 ttggttcggt gcaaaatcaa cttcaagtga ctataaacaa cattactgtt actcaagtaa
     5341 atgttaaagc agctgaatca accataagag atgtagactt tgcagctgaa agtgcaaatt
     5401 tttctaaata taacatcctt gcacagtcag gttcttatgc tatgagtcag gctaatgcag
     5461 tgcagcaaaa tgttttaaaa cttcttcaat aatttcttag atgcttttat ggcatctaag
     5521 cttttaaagt gcttttttct tttctaagaa gtcttgcaaa ggtaaaatag cgattttaag
     5581 tcttttatct tgagcttcta aaagttctat gatattttct atcaaagctt cgtgtgcata
     5641 aacccaagca aaaagtttat tttgtttatc agattcatct ttgatatctt taagatataa
     5701 aggcgttaat atactttgtt catgatgcaa agtagggcct aaaatttctt gcaaaaagag
     5761 atatttttta tttgaaagtt tttctttgat tttgtctata ttttgattta tttgttcaag
     5821 agagagcttg ttttttccat gggtaagatt gtgaatttgt ttttgaactt ttttgcactc
     5881 ttttttaaaa ttcaaggata aattcatatt ttttttgatt ttttgataga tttttaatcc
     5941 gagttttact tgttctttag tatttaaaac ttgtaatttt ttaaattttt tatctttttt
     6001 attttcgagt aaattttcgc aaagttcttt aaaaggtttt tctatagcgc tttctatcct
     6061 agcacctcct tcagtgcaat tataagtttt acttttgcta aaagcaatga aattttcaaa
     6121 aatttgtcta aaaagtgtcc aaatttcaga actttgaact tttccatttc ctccataagc
     6181 tgtagtgcta aatctatcta aatctctttc atagtctcca ttgtgtaaat tagcatggat
     6241 gaaaccttga gaatgtgttt gcccatcttt ggcataagct aaatcttgac ctatgagaat
     6301 gatgttgtta tgtcctaaat tttcagccag ttcgtaagcc atatgagata cactcatacc
     6361 cgcgttaata tatccataat cgtctagctc caagtatcta gcaaaaggct ggccttttat
     6421 gattaaaatg tattttcttt tatttttttc aagataagaa atggtttttt tatgcaccaa
     6481 agaagctact agaaaaatga tgtctttatc aaaatcttta aaatcattat taaaacattc
     6541 agctactatt tcatcgcgtt ccaacataca aacataatca ggttttatac catgtttagc
     6601 taaaatagga taagaagaat ccgcacaaaa aattgtagct ttactagcat acttttttaa
     6661 caaaggaagt tgtttagtaa gagatggtcc tgtagaaaca atgatagctg tatcacttat
     6721 accctttctt ttagaaagta attctttata actagaatgg gtaatcattt gaggaagatt
     6781 ataaacaaat tgttctatac cttgcatggc atctttagga tcatttccac gcataagatt
     6841 gtgatttttg atgatttgca tgttgagttt attaagtttt aaaatatctt ctttatagtg
     6901 ttcataaaaa tcattagcaa tgtgtaggtt ataagaacga taaaacaaat cccctatcaa
     6961 acgaaaaact ttatccattt taggaagatt aatatcatca tgatataaaa taatgagtcg
     7021 ccctaagctt aaatctttgc taaaatctat gaaatttaag gccaaaaaga taagctctaa
     7081 ttctttttca aagatgatta ttcttttaag tgcttgattt tgaagtagaa ttttatataa
     7141 aattccattt ccaaaaccat aaaaaaaaag cacaggatag cgtgcaaaat ctttaaaata
     7201 ttctaaattt ttttcaagtt ctttgatggg atcttgatac atttttttta aatttctttt
     7261 ttttatgata ttgatatcaa gattatcttt tccttgagtg aaagtaaatt ctctaagctc
     7321 ttttagatct ttaagttttt tgcgtaagtt gttatactca aaaccgctca aagcttttaa
     7381 atttttgtta aaattatttt cttctctcac cttctcaccc tttccatcca tttatctaat
     7441 ttt
//
LOCUS       DAEBKH010000080         7393 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.080, whole genome shotgun sequence.
ACCESSION   DAEBKH010000080 DAEBKH010000000
VERSION     DAEBKH010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7393)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7393)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7393
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.080"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..185
                     /locus_tag="KIL20_001142"
     CDS             <1..185
                     /locus_tag="KIL20_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721172.1"
                     /translation="FKNIKDFKIASKNSLFCDFSYNQLSDLRKLKNFKYCLILENYDI
                     FEQEFENKENQTPSLF"
     gene            complement(177..629)
                     /locus_tag="KIL20_001143"
     CDS             complement(177..629)
                     /locus_tag="KIL20_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HBD2721173.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLVK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMKIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIASNGIGGYNGGLEIKRFLLENEGVNLK"
     gene            684..3230
                     /locus_tag="KIL20_001144"
     CDS             684..3230
                     /locus_tag="KIL20_001144"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HBD2721174.1"
                     /translation="MSFMQEYNKLVEERAALGIPPLPLNANQTKELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLNSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAREVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQAGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVINLEMGDEFEIHPYEGKIIKNGSTIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCAKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     MTLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNVPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEAGYENK
                     ATLVRRAEKMREWLKNPTLLRADKDAKYAYIIDINLNDIKEPILACPNDPDDVATLSE
                     ILADNKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSDEHKANIYRYLNFNEIENFKLEN"
     gene            3290..4528
                     /locus_tag="KIL20_001145"
     CDS             3290..4528
                     /locus_tag="KIL20_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HBD2721175.1"
                     /translation="MKLLFTSFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVAYLPKLQQFDFLLLKIAIDPITYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWQEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQD
                     DLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALENYENTNFLIQNGANVN
                     QANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFIT
                     FCALEHTSKNVLMHAAAYGNVEILKLLISKGANLNAVDDLGFNALDFALAAGKKENAD
                     YLKSLGLKANENLFYGGSLE"
     gene            4525..5274
                     /locus_tag="KIL20_001146"
     CDS             4525..5274
                     /locus_tag="KIL20_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HBD2721176.1"
                     /translation="MKTAFITGASSGFGRACVEAFIQKGYKVIALARRKERLEELKNS
                     HKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKVVIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            5271..7004
                     /locus_tag="KIL20_001147"
     CDS             5271..7004
                     /locus_tag="KIL20_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HBD2721177.1"
                     /translation="MNKFLVLLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFAGVLSGTFLLSLSANIFKAQHLAFVNFYNTAVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISDISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGTLDTAELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASANPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            7001..>7393
                     /locus_tag="KIL20_001148"
     CDS             7001..>7393
                     /locus_tag="KIL20_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HBD2721178.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTR
                     AELSFYHENDTLFYAMFDPKSKKKYIIEYLDFADEKICAFMPKLLEYLRQDNKLKEKL
                     FGVEFLTTKQELSITLLYHKNIEDIKSNL"
BASE COUNT         2554 a         1110 c         1292 g         2437 t
ORIGIN      
        1 aatttaaaaa cataaaagac tttaaaattg cttctaaaaa ttctttattt tgtgattttt
       61 cctataatca gctttcagat ttaagaaaat taaaaaattt taaatattgt ttaattcttg
      121 aaaattatga tatttttgaa caagaatttg aaaacaaaga aaatcaaacc ccaagcttat
      181 tttaaattca ctccttcatt ttcaagcaaa aatcttttta tttcaagccc tccattatat
      241 cctcctatgc cattacttgc aataactcta tgacaaggta taaaaatagg aatctgattt
      301 ttagaatttg catttccgac agctctaaaa gcttttggat gattaatttt ttctgctata
      361 tctttataag tagctatttt accataagga attttcatta aagccttata aacctttgat
      421 tcaaaatctg taccttgtat caaaacagga atgctaaatt ttctaagctt atgagtaaaa
      481 tataaatcaa gttcatattt tactaagtca agcaaactac aatttttttc tgatctttta
      541 ttatcacaaa aatcgactct agttaaaaat tttccatcac tatgtaaaga taggtaacat
      601 aaaggcattt tataataaac tttaaacatt ttttatcctt caaagagcta caattataat
      661 aaaaaatatt taaggagtag aaaatgtctt ttatgcaaga atacaataaa cttgttgaag
      721 aaagagccgc tttgggtata ccaccccttc ctttaaatgc aaatcaaact aaagaacttt
      781 gtaaactact tgaaaatgaa aataatgaag agcttgcaaa tcttttagaa aatagagtaa
      841 atcctggtgt tgatgatgca gctttagtaa aatgtgaatt tttaaattct atacttaaag
      901 gcaaaatcag tgctccaaat atagacaaaa aaagagcctt aagaatgctt ggaactatgt
      961 taggcggata taatgttaaa gttttaatcg atgctttaaa agatgaaaac atagccaaag
     1021 atgctgcaga agtgttgaaa aatattattt ttgttcatga taattttcat accatagctg
     1081 aacttagcaa aaacaatcca cacgctaggg aagttttaca aagctgggca aatgcggact
     1141 ggtttaacaa aaaagaaaaa ttacctcaag tgattaaatg tatagttttc aaagtagcag
     1201 gggaaacaaa taccgatgat ctaagccctg caggagatgc ttttacaaga agcgatattc
     1261 ctttgcatgc aaatgccatg ctaaaggtaa gacaagcagg atccttagaa aaaatcaaag
     1321 agcttaaaaa aagcggtcgc gaagtagttt atgtaggtga tgttgtagga acaggttcaa
     1381 gtagaaaatc agcaataaat tctatacaat ggcacttagg aaaagaaata gaaggtgtac
     1441 caaacaagca cagcggtggt atagtaatgg gttcaaccat agcaccgatt ttctttaaca
     1501 ctgctcaaga tagtggggct ttacctatca tctgtgatgt aataaactta gaaatgggcg
     1561 atgagtttga aattcatcct tatgagggaa aaatcataaa aaatggctct acaattgcag
     1621 aatttacact cagtccaaac actctcttag atgaagttag agcaggagga agaatcccac
     1681 ttatcatagg tcgtgggctt tgtgctaagg ctagagaatt tttaggtatg gaaagtgaaa
     1741 atatctttac caaacctgaa caacctaaat cttcaagcgg tggttatacc ttggctcaaa
     1801 aaatgctagg tcgtgcctgt ggagttgaag gtgtgcgtcc aggtatgtat atagaaccta
     1861 tgactttaac tgtaggctct caagatacta caggtcctat gactagagat gaaattaaag
     1921 agcttgcaag cctaggtttt aatgcagact ttgtgatgca aagcttttgc catacagctg
     1981 cttatccaaa agtaagcgat tcaaatttac ataaaacctt gcccaatttc atgacaagtc
     2041 gtggtggggt gagtttaaaa ccaggtgatg gggttattca ctcttggctt aatcgttttg
     2101 tattgccaga taccgtagga acgggcgggg attctcacac acgctttcct ataggaattt
     2161 ctttccctgc aggaagcgga cttgtagctt ttgctgcggt tactggctct atgcctttaa
     2221 atgtacccga aagtgtttta gtacgtttta gcggagaatt gcaagctgga gttaccttaa
     2281 gagatttggt taatgctata ccttattatg caatcaaaca aggacaactt actgttgaaa
     2341 agaaaaataa gaaaaatatt tttgcaggaa aaattttaga aatagaaggc ttgccaaact
     2401 taaaagtcga acaagctttt gaactcagcg atgcaagcgc tgaaagatct gccgctgctt
     2461 gtagtgtgga tttaagcata gaaagtgtaa gcgaatatat caaatccaat atttctttaa
     2521 ttgaagctat gatagaagca ggatatgaga ataaagctac ccttgttaga agggctgaaa
     2581 aaatgagaga atggcttaaa aaccctactc ttttaagagc agataaagat gcaaaatacg
     2641 cttatattat agatattaat cttaatgaca ttaaagagcc aatcctagct tgtccaaatg
     2701 accctgatga tgtggcaacc ttaagcgaaa ttttagccga taataagcgt ccaaaaaata
     2761 tagatgaagt ttttgtaggt tcttgtatga caaacatagg acattataga gctttgggag
     2821 aaattttaaa agataaaggc atacttaaaa ccagactttg ggtagtgcct ccaacaaaaa
     2881 tggataaagc acaacttact aatgaaggtt attacagcat ctttggtgca gcaggtgcta
     2941 gaatagaagt tcctggttgt tctttgtgta tgggtaatca agctagagta aatgatggag
     3001 ctgtagtttt ctcaacttct acaagaaatt ttgacaaccg tatgggaatg ggtgctaaag
     3061 tatatttagg cagtgcagaa cttgcagcag tttgtgcgat tttgggtaaa attccaagca
     3121 aggaagaata cttacaaatt gttagcgaaa aactaagtga tgagcataag gcaaatatct
     3181 atagatattt aaattttaat gagattgaaa atttcaaact tgaaaattaa ttcaaattta
     3241 atacttattt ggattaaata acaaaattaa aattttcaaa ggaaaaatat tgaagttatt
     3301 attcacttcc ttttgttgtt ttgcaagttt aatggctagc gatgccatta actgcgacaa
     3361 cattaaaaat aataaaacat tgctaaatga aagttcaaat ttagattatt taaatatagc
     3421 ttcaagctgt aaagaatctt taaaaaatca agattttaca aaaaaactct atgcgatttc
     3481 caatgaaatt cgcggaagca atagctcttg taatggtgtg gcttatttgc ccaaattaca
     3541 acaatttgat tttttattat taaaaatagc catcgacccc atcacttatc aaaaaacttt
     3601 agatacacct gagaatttag aaaaaaaata tgatatttta aaatcttact ttagatattg
     3661 ggcatatcaa agtataggaa attttagact ttacaaagct ttttggcaag aatacaataa
     3721 cgctatagaa cctttagaaa agtattttga aagtaatttt aattttgaca aaggtagcaa
     3781 tatttactat actagcaatg ccttaaacga atttttaaat tgggctgttg gagaaacaaa
     3841 aatttacaaa gacattagtc ctttagcaaa aatcatgtca aataaaaatt attcggtatc
     3901 ttatatacaa gattttattt tttcaaataa tccaagtcaa gatgatctta ctatagcctt
     3961 acaagcagcg cttctaaatc aaagagaaaa agaaatttta gaacttttga ttcgttttgg
     4021 cgctaggatt gacgaaggtt atgaaagtgc tattttttac gcattggaaa attatgaaaa
     4081 tacaaatttt ttaatccaaa atggagcgaa tgttaatcaa gccaatgcct ttggtaaaac
     4141 tccgcttttt tatgccatag agtttaatcg tcttgatatc ataaaactac ttcttgataa
     4201 tggagcaaat gttaatcaaa aatatattaa taacaatgaa aaattagcat taagtgcgaa
     4261 cataggttca aatacgcctt attttattac attttgtgct ctagagcaca cttcaaaaaa
     4321 tgttttaatg catgctgcag cttatggaaa tgttgaaatt ttaaaacttc ttatctcaaa
     4381 aggagcaaat cttaacgctg ttgatgatct tggttttaat gcacttgact ttgcgctagc
     4441 agcaggcaaa aaagaaaatg ctgattatct aaaaagcttg ggtttaaaag caaatgaaaa
     4501 tctattttac ggaggtagtt tagaatgaaa accgcattta ttacaggagc tagttcaggt
     4561 tttggtagag cttgcgttga agcttttata caaaaaggct acaaagtaat cgcccttgct
     4621 agacgcaaag agcgtctaga agagttaaaa aattctcaca aagataagat ttacacgctt
     4681 tgcatagatg taagaaatca aaaagaaatc tttgaggcta ttgaaaattt acccaaagaa
     4741 tttcaagaaa ttgatgtgct ttttaataat gcaggcttag ctttaggggt agatgaattt
     4801 gataaattaa accttgaaga tattaacact atggtagata caaacatcaa aggattttta
     4861 tatgttgcaa aagttgttat tcctatactt cgtaaacaaa aaaatgctta tatttttaac
     4921 ttaggttcgg ttgcaggacg caatccttat tttggaggca atgtgtattg tggaaccaaa
     4981 gcctttgtag gacaattttc attggcctta agaaatgatc ttagaggaag caatatcaaa
     5041 gtaacaaaca ttgctccagg actttgcaaa actgaattta gtgaagtgcg ttttaaagga
     5101 gatatccaaa aagctgatgc agtgtatgaa aatacgcaat ttatcagtgc taatgatatt
     5161 gccaaagtgg taatgtctat tattaaccta ccaagccata ttaatgttaa tgaaatcgag
     5221 cttatgccgg taacacaaac ttggaatgga ttttatatag aaagagatga atgaataaat
     5281 ttttagtttt attgttttta cctttagttg catttgcaaa ctcctcagaa gcagctgcaa
     5341 atgctaattt atttggagct tttacgctta taccgccttt agttgctatt gctttagcct
     5401 ttatcacaaa agatgttatt ttgtcactct ttgctggagt tttaagcgga acttttctac
     5461 ttagcctttc tgcaaatatt tttaaagcac aacatttagc ttttgtaaat ttttataata
     5521 ccgcagtaga atctttttca aagattattt cttatatctt aggttcaact tcagatccag
     5581 taaatgcagg aatcatttta caaattcttt gtataggtgg tcttgtggca cttatcacaa
     5641 aaatgggtgg tgcaaaagct gtagcattaa aatttgccaa aagagccaaa tcagctgtat
     5701 cagctcaagt taacacttgg tttttagggc ttttaatatt ttttgatgat tatgctaatt
     5761 tactgatcgt aggtccaatt atgcgtcctt tggcggataa atttaaaatt tctcgtgaaa
     5821 aatttgcctt tattatcgac tctaccgcag ctcctgtggc aggaatagct gtaatttcta
     5881 cttggatagg cttagaagtt tctttaatta aaaccgctta tgaacacata ggcattagcg
     5941 atattagtgc ttttggaatt tttgtcgaaa ccatacctta tcgtttttat aatatcttca
     6001 tgcttttttt tgtagtcatg actgcaatca tgggacgtga gtttggttct atgtacaagg
     6061 ctgaagtgcg tgcaagaacc acaggacaaa ttgcacctct acctaaatca ggcacactag
     6121 atactgctga attagaggat cagtttttag cgccaaaaga aggtattaaa attcgtgctt
     6181 ttgatgctat tgttcctatt tttactttaa tcattttagc tatattagga ttttatttta
     6241 atggacttag cactttagaa ggcgaagaac ttgcaaaagc aagtgccaat cctttgtctt
     6301 ttgaaacttt tagggctgct tttggaaatg ctgattcttc tgtggtgtta ttccaagctg
     6361 ctttgtttgc tgctattgta gcgattttta tcggggtgcg tcgtaaaatt ttcaatctta
     6421 aagaagcggt agaaacttgg atatatggct ggaaaaccat gatttttacc atagtattgc
     6481 ttttatttgc ttggtcgctt tcaagtatag taaaagatct aggaacttct ttatttatca
     6541 ctagtttgct tgcagataaa ttgcctgagt ttattttgcc tgctactatt tttgcttttg
     6601 cttcagccat ttcttttgcc ataggaacaa gctatggaac tatggggatt ttaatgcctt
     6661 tggctgtgcc tttagctcat gaaatcgcca aaatcaatgg tatggatgca aatgctatgc
     6721 atcattatat ggttattaat ataagctgcg ttttaacagg tgcgattttt ggaaaccatt
     6781 gctcaccaat ttcagataat gtaatccttt catctatgag cgcaaaatgc gatcatatgg
     6841 agcatgtaag aacacaaatt ccttatgctt tatttatctg tggtatttct ttaatcgctg
     6901 gatatattcc tgtatcttta ggacttagcg tttggtttgt cttgccttta aatttcatac
     6961 ttattgcgct tttactaaga ctcatcggaa agaaagttcc atgagtcttg aaaattttgg
     7021 aaattttctc actttagatg aaaaacactc tttcataaaa aaatatttta aagaatttta
     7081 tacaaaggat tttaaacttt ttgcctcaaa agataaacat tatcgtacaa gagctgaact
     7141 ttcattttat catgaaaatg atacgctttt ttatgcaatg tttgatccaa aaagcaaaaa
     7201 aaagtacatt atagaatatt tagattttgc tgatgaaaaa atttgtgctt ttatgccaaa
     7261 acttctagaa tacttgcgtc aagataataa attaaaagaa aaactttttg gtgtagaatt
     7321 tttaaccaca aagcaagaac ttagcataac cttactctat cataaaaata tagaagatat
     7381 aaagtcaaat tta
//
LOCUS       DAEBKH010000081         7350 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.081, whole genome shotgun sequence.
ACCESSION   DAEBKH010000081 DAEBKH010000000
VERSION     DAEBKH010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7350
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.081"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..313
                     /locus_tag="KIL20_001149"
     CDS             <1..313
                     /locus_tag="KIL20_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HBD2721179.1"
                     /translation="KLYEVLKNQNIFFVDSKTIGNSKANKIAKELNVPYIQRDVFLDN
                     EDDVNYVKKQIQNAVKLAQKKGFVIAIGHPRKNTFKALEQSKDLLKSVDLVYLSEIYG
                     K"
     gene            303..1076
                     /locus_tag="KIL20_001150"
     CDS             303..1076
                     /locus_tag="KIL20_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HBD2721180.1"
                     /translation="MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASMAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVITLSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDINQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLA"
     gene            1073..1456
                     /gene="ruvX"
                     /locus_tag="KIL20_001151"
     CDS             1073..1456
                     /gene="ruvX"
                     /locus_tag="KIL20_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HBD2721181.1"
                     /translation="MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANARKKDGKLDSLSAFIMIKDYFAL"
     gene            1485..2324
                     /locus_tag="KIL20_001152"
     CDS             1485..2324
                     /locus_tag="KIL20_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HBD2721182.1"
                     /translation="MQNILSSFTQEKNVCVFANTLKISIEELEKEFLKQKLKFKKINA
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
     gene            complement(2500..2997)
                     /gene="msrA"
                     /locus_tag="KIL20_001153"
     CDS             complement(2500..2997)
                     /gene="msrA"
                     /locus_tag="KIL20_001153"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HBD2721183.1"
                     /translation="MKNIVLGGGCFWCVEAVFERLKGVIDTEVGYSGGNPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILTLFFKIHDPTSIDKQGGDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPNQGYCQAVIAPKLQ
                     KIQSG"
     gene            complement(3038..3556)
                     /gene="ppa"
                     /locus_tag="KIL20_001154"
     CDS             complement(3038..3556)
                     /gene="ppa"
                     /locus_tag="KIL20_001154"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HBD2721184.1"
                     /translation="MDLSKIKIGDIPNKINAVIEIPYGSSIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            complement(3566..4144)
                     /locus_tag="KIL20_001155"
     CDS             complement(3566..4144)
                     /locus_tag="KIL20_001155"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HBD2721185.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVVNTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERTIEPIVADMKELIKKIQSI"
     gene            complement(4141..5892)
                     /gene="aspS"
                     /locus_tag="KIL20_001156"
     CDS             complement(4141..5892)
                     /gene="aspS"
                     /locus_tag="KIL20_001156"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HBD2721186.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLIAEGTIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVINVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFAKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKEDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELNLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANSIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            5983..6843
                     /locus_tag="KIL20_001157"
     CDS             5983..6843
                     /locus_tag="KIL20_001157"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HBD2721187.1"
                     /translation="MQNKIDYKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLF
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSVFLEDKQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCILCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            6843..>7350
                     /locus_tag="KIL20_001158"
     CDS             6843..>7350
                     /locus_tag="KIL20_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HBD2721188.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIELDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYSQISNE
                     FNVILEEEK"
BASE COUNT         2493 a         1053 c         1208 g         2596 t
ORIGIN      
        1 aaagctttat gaggttttaa aaaatcaaaa tatatttttt gtagattcta aaactatagg
       61 aaattctaaa gcaaataaaa tagccaaaga gttaaatgtt ccttatatac aaagagatgt
      121 gtttttggat aatgaagatg atgttaatta tgttaaaaaa caaattcaaa atgcagtaaa
      181 acttgcacaa aaaaaaggtt ttgttatagc cataggacat cctaggaaaa atacttttaa
      241 agctttagag caaagtaaag atttgttaaa aagcgttgat cttgtgtatt tgagtgaaat
      301 ttatggcaag tgaaattttg cctgatgaat ttttagaact ttttaaagat ttaaaaaagc
      361 ctcctaaaaa attacactat aaaggaaatt tatctttatt aaaacaagat aaaattgcta
      421 ttataggttc aaggcgtatg agtgtttata cgaaaaattg tgttttttcc ttagcgagta
      481 tgcttaaaaa tgctcatctt tgtgtggtaa gtggcggtgc tttgggtgtg gatatcaccg
      541 caagtatggc ggctatgcca aatactatag gtatttttgc taatggtttg gatcaaattt
      601 atccaagaac taatgaaaaa atcattaaac aaatttatga aaatgctttg gctttaagcg
      661 aatacgaaga tgattatttg ccaaaaaatt atgacttttt actaagaaat cgtttggtta
      721 ttactttaag taaggccgtt gtagttgcac aagcagatat aaaaagtggt tctatgcaaa
      781 gtgcaaaact tgctttagaa ctcaataaac ctttatatgt tttaccgcaa agactaggag
      841 aaagtacagg gactaatttg cttttaaagg aaaataaagc aaaattgatt tgtgatttca
      901 aagaatttgt aagtgagttt gcaagtatag atataaatca agatgagttt ttagagtttt
      961 gtaaaaaagg tgtgagtgtt gatgaggctt taaaaattta tggacaaaaa gtttatgaat
     1021 atgaacttga gggaaaaatt tccatagaag ggctttttat aagggtttta gcatgagagc
     1081 tttggcttta gatgtaggtt taaaacgcat aggtgtagcg ctttgcatag ataaaaagat
     1141 cgctttgcct ttagatgcag ttttaagaaa aaatcgcaat caagccgcta atgaaattaa
     1201 aaatttactt aaaatacatg agatttcttt actcattgtt ggcattccta agggtggatc
     1261 aagtgaagaa gaaatgacaa gacgcattaa gcattttgtt tctttgcttg aatttgataa
     1321 agaaatttgc tttgtagatg aaagcggaac aagcaaagaa gctttaggat acggcgtagc
     1381 caatgcacgc aaaaaagatg gtaaattaga ctctttatcc gcttttatca tgataaagga
     1441 ttattttgct ctctagaata gaaaaacttt ataccaaaga tgaaatgcaa aatattttat
     1501 cttcttttac tcaagaaaaa aatgtttgtg tatttgcaaa tactttaaaa attagcattg
     1561 aagaattaga aaaagaattt ttaaaacaaa aattaaaatt taaaaagatc aatgcttatt
     1621 gttatttgtt tgatgccaaa gataaggcta tcttaagttc tatgaaagct tttaatgagg
     1681 cgcactttta tatacaaaat tattcttctt atttgtgtgc tttaaattta gaagtcaaag
     1741 cagggcaaag ggttcttgat atgtgtgcag ctccgggtgg taaaagtatc aatcttgcaa
     1801 attttatgca aaatacaggt tatttagctt gcaatgagat gagtagggat agatttttta
     1861 ttttgcaaaa aaatcttaaa aattacggcg tgaatgctaa agtttttatg aaagatggta
     1921 aaaatatagg caatttatgt cctttaaaat ttgataaaat cttacttgat gcaccttgtt
     1981 cgacttttgc taaaataggt tttgatttgg aaaaaagtta taaagaaatc aaaaatattg
     2041 caaaaactca aaaaaaactt ctacattctg ctttaaaggc attaaaaata ggtggagagc
     2101 ttgtatatag tacttgcacc tttaccaaag aagaaaatga agaagtgata gagaatgctt
     2161 taaaaagtga gtttaaatta gagcttttag atattgattt ggaaaatgtt gaggctaaag
     2221 cagggcaaag tgaagaattt gctgaaattt caaaatgcag acggatttta ccaagcttag
     2281 actatgatgg atttttcata gctaaactta ggaaattatg ttaattgata aaattattca
     2341 catttaaata caaattcata aaaaaactta aaaaacaata aataattttt tctttatttt
     2401 aaagcttaaa gttctatttt taagtacttt gaaaagaaaa tcacagcgtg aaaaggctgt
     2461 gaataaagtt gaattttttt taaccttaaa aagatgaaat tagcctgatt gtattttttg
     2521 cagttttgga gctattacag cttgacaata tccttgattg ggattattta taaaataatg
     2581 ttgatgatag ttttcagctt tgtagtaagt ttgcaatctt gaaattttag taactatttt
     2641 tttgctaaat attttttgct gttcttcgat gaaattttga gctaaaattt tatcttcttc
     2701 attttcgtaa aagattattg agcgatattg tataccaata tctccacctt gtttatctat
     2761 acttgttgga tcatgaattt taaaaaagag tgttaagatt tcaagaagag agatttgttt
     2821 ttcatcgtaa tttattttga caacttctat gttaccatca ccattacaca cgctttcata
     2881 gctaggattt ggatttcctc cgctatatcc aacttcagta tcgattacac cttttaggcg
     2941 ttcaaatacg gcttcaacac accaaaaaca accaccacct aaaacgatat ttttcattgc
     3001 gagttttcct tgagtttagc cctttgaagg gctaagatta tttgtagttt ttgattgctt
     3061 tttctaaaat ttcaattgca gctttttcat ctttaaaatc ttgtacttta acccatttgt
     3121 ttggctctaa aattttataa gtttcaaaga aatttttgat tttatttaaa gttgcttgtg
     3181 gtaaatccgt gtaagttttt atattgtcat atcttgcatc tatttttgaa tttggaactg
     3241 caagaagttt ttcatccatt ccgctttcat cttccatgat taaaacacca attaagcgac
     3301 aaggaatcac ggctccagct tggataggat attcattaag cactaaaata tccacaggat
     3361 caccatcatc agccaaagta ttggcaataa aaccatagtt tgctgggtaa aacatcgcac
     3421 tagccataac gcgatctacc atgatagcac cactatcttt atcgatttcg tatttgatgc
     3481 ttgagccgta tggaatttcg attacggcat tgattttatt tggaatatct ccgattttga
     3541 ttttgcttaa atccattttt tctccttata tactttgaat ttttttaatc agttctttca
     3601 tgtctgcaac gataggttcg atagtgcgtt ccccatcgat aataaaatga agttttttct
     3661 tttgataaaa atctaaaatt tcatttaaag gttctgtata aactttcatt ctattataaa
     3721 acacttcttc attatcatct gcaccacgat ttctgcctaa aactctttct ttggcaactt
     3781 cttcgcttac tcttacttct atgacacctt taagacaaat ttcattttgc tcacttaaaa
     3841 ccttatcaaa ttccatcatt tgctctacac ttcttggata accatcgatg ataatagttt
     3901 tagttggagc agcttttaga gcacaaacta tagtatttac aacaacatct aaaggaacaa
     3961 gattgccttt ggatataaaa ctatctatag tttttccaag ctcactcccg cttgctactt
     4021 cagctcttaa aagatctcct gttgaatagt gtgtgatatt tgtcgcatct gcttgtgcga
     4081 ttaaactagc atcggtagtt tttccactac ctggtgcacc tatgattaaa aacaattctt
     4141 tcattttata ttctccctta atttgattcc taattctctc attgcttcat tgctagcagg
     4201 cgatggtgca tctgtcatta agcattgcgc tctttgggtt tttggaaagg ctataacctc
     4261 tcttatactg tttgctcctg taactagcat gatgagtcta tcaagtccta tagcgatacc
     4321 tccatgtggt ggagcaccaa aacttaaagc atcaagcaag aagccaaatt tttctttttg
     4381 ttgttcttca tcgatattta aaagtttaaa tactttttgt tgaatatcgt ttttatggat
     4441 tcttatacta cctccaccta gctcaacgcc atttaaaact acatcataag caatagatga
     4501 aatttcttct aaatcagtct catcgatatt ttttggcatg gtaaaaggat ggtgcatcgc
     4561 agaataactt ccatcatcat tttgttcaaa cataggaaaa tcaacaaccc ataagaattc
     4621 taaggcattt ggatctataa gatttaactc gttggctaag aaaattctaa atcttcccat
     4681 ataatcaagc acggtttttt tagctcctgc accgaaaaat accacatctc ctacttcaag
     4741 ctcacagcgt ttgcttagct catttaaatc ttcttcgcta aagaatttgc aaagcggacc
     4801 tttaagccca tcttctttaa cttgtataaa agctaagcct tgggcaccaa atttacgcac
     4861 aaattcttca aatctttgca tttgtctttt tgaaaaaata gtatcgcctt ttggaacgcg
     4921 tatggctttg atgcgatttt tctttgtatc tttggcaata tttgcaaaaa tttcattatt
     4981 tgacttagca aaaatatcaa tcacatcaat aaatttaaga tcaaatctta aatccggctt
     5041 atcagagcca taattctcca tagcgtcttt gtattgcatt tgtctaaaag gggtttgaat
     5101 ttctttgccg caagctttga aaatatcttt taaaaaagtt tcagctacat tgattacatc
     5161 tttttgttcg caaaaactca tttcaacatc aatttgtgtg aattcaggtt ggcgatcagc
     5221 tcttaaatct tcatctctaa aacattttgc gatttgaaaa taacgatcaa aaccgctaca
     5281 cattaaaagt tgtttgaaaa gctgagggct ttgtggaaga gcataaaatt caccctgatg
     5341 cacacgagaa ggcacgagat aatctcttgc accttcggga gtagctttgg taagaatagg
     5401 ggtttcaact tctaaaaatc ccatatttgc caaagaattt ctagctgcta tacaagcttt
     5461 agaacgcaag gcaaaatttt cataaagttt aggatttctt aaatctaaaa agcgatattt
     5521 taagcgtaat tcttcattta cactttcatc agcgatagca aaaggaggta cggcactttc
     5581 attttctatg gtaagtttag aaacaactac ttcgatttct cctgttttta atttaggatt
     5641 tacaagtcct tcgccacgcg gacgaatagt accttctgca ataagtacaa attcatttct
     5701 tgcattggaa gcgatttcat gagcttcttt gctatcattt ggatcgcaaa caagttggat
     5761 aataccactt ctatctctta aatctataaa aataactcca ccatgatcgc ggtagctatt
     5821 tacccaaccg caaagtttaa cgctttgacc aacatgggaa attcccaagt ctgtattata
     5881 atgacttcgc aaatttattc cttgaaaaag attttttaag ataatgagca aaattatagt
     5941 atttttattc ttttgctttg ctaagatttg atataatttt ttatgcaaaa taaaatagat
     6001 tataaaaata ttaaaaaaat cggacttgtt acacgaccca atgtgagttt agataaggaa
     6061 attttaaaac ttcaatcgat tttatctata tataaagttg agcttgtatt gtttaaagaa
     6121 agttctgaaa ttttagattt gccaaagtat ggattggatg atttgtttaa aatatctgat
     6181 tttgttattt ctttaggtgg agatggaact ttgatttctt tatgtcgtaa agcttgtgaa
     6241 tatgataaag cagttttagg aattcatgct ggacatttag gttttttaac agattttaaa
     6301 gttgatgaag ctgaaaattt ttttcaagct ttttttcaag gagaatttag aatagaaaag
     6361 ccttatttgt taagtgtttt tttagaagat aagcaaggaa aaatcttaga aaaattggct
     6421 tttaatgatg tggttatcag taaaaacaat caagcttcta tggctcatat agaagttttt
     6481 agaaaagaaa agaaatttaa tgaatatttt ggagatgggc ttattgttgc aactcctgcg
     6541 ggttcaacag cttataattt aagtgcaaat gggcccatag tttatacttt agctcaagct
     6601 tttatcttaa ctcctgtttg ttctcattct ttaacacaac gccctattgt tttgccaaaa
     6661 ggttttgaaa tagagattat ggcaaaggat tgtatacttt gtattgatgg gcaagaaaat
     6721 tataaaatga atgattttaa aagtataaaa gtgggtttaa gtgataaaaa tgtggcttta
     6781 attcacccaa aaaataggga ttattttcaa attttaaaag aaaaattaca ctggggaaat
     6841 tgatgataaa tagaattttt atgaaagaaa atcttggttt taaaaaggct gagcttgaaa
     6901 tttctaaagg gcttaccgtt tttacaggcc taagtggagc tggaaaatcg gtcttgttta
     6961 aaggaatttt atccgcattt tctttgagtg aaagtgaggc taaaattgtc gaaatagaac
     7021 tagatgataa gttggattta gaaagttttg gtatagaaag tgaagaggag aatgttttta
     7081 agcttttaaa agaaaaaaac acaaaatatt ttattaacaa tcaaagcata gcgaaaaaaa
     7141 gtttgcaaaa tttaagtaaa acttttatta agtatttaag tgcaaaggaa aataacgaat
     7201 ttggaaatga aaaattttta aatctcttag atgccttgga gatgcaagaa aatacaaatt
     7261 ttgtttcctt tttagaagat tttaaaaaag attttaatgc ttatagtcaa atttctaatg
     7321 agtttaatgt aattttagaa gaagaaaaaa
//
LOCUS       DAEBKH010000082         6963 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.082, whole genome shotgun sequence.
ACCESSION   DAEBKH010000082 DAEBKH010000000
VERSION     DAEBKH010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6963)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6963)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6963
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.082"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..310)
                     /locus_tag="KIL20_001159"
     CDS             complement(<1..310)
                     /locus_tag="KIL20_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HBD2721189.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     F"
     gene            complement(311..1030)
                     /locus_tag="KIL20_001160"
     CDS             complement(311..1030)
                     /locus_tag="KIL20_001160"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HBD2721190.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCSKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVINKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            complement(1030..1281)
                     /locus_tag="KIL20_001161"
     CDS             complement(1030..1281)
                     /locus_tag="KIL20_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721191.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNTDIKKI"
     gene            complement(1285..2730)
                     /locus_tag="KIL20_001162"
     CDS             complement(1285..2730)
                     /locus_tag="KIL20_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HBD2721192.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
     gene            2870..4033
                     /gene="ftsW"
                     /locus_tag="KIL20_001163"
     CDS             2870..4033
                     /gene="ftsW"
                     /locus_tag="KIL20_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HBD2721193.1"
                     /translation="MVADKRLFYLSCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQ
                     LFFGISGILIMFFISRLDPDKALSKKIILAILIISFIFIIILPFLPSVLATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPMLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            4030..5058
                     /gene="murG"
                     /locus_tag="KIL20_001164"
     CDS             4030..5058
                     /gene="murG"
                     /locus_tag="KIL20_001164"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HBD2721194.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFGKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAQFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFMQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(5029..6192)
                     /locus_tag="KIL20_001165"
     CDS             complement(5029..6192)
                     /locus_tag="KIL20_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HBD2721195.1"
                     /translation="MASFKKIFWINVIIVIIVAFNLRAPITAVGPIIDIIKDKYYLNS
                     TVAGILTSLPLIAFGSISFIVGYFSPIRAIVFGIFLIFLGEIIRSYFGVYGLFLGMLA
                     MGCGIAIANVLLPSFIKEKFPKKMASIMGIYSLVLSISSIMGIALAIPLLSVFDLAGA
                     MFFWAIFSFIALVVYYPQAKNGRFFRIKKKAHKKINLFTNLTTWKITLFMGFQSFLAY
                     SLFFWYVQIVVEKGFDKEFSTSMVLFAQLVAAPVSLFGPLLLGKLRQNLHTFYIAGLC
                     SMYVIAFGILFIFDSKISIIISAFIMGFPWGGVFGIALLFIAQKSSNAQIAARLSALA
                     QGFGYLIAAQGQWIIGFLHDKFENFSFAILMLVFVGILVNIFGYLSYKSQIIK"
     gene            complement(6200..>6963)
                     /locus_tag="KIL20_001166"
     CDS             complement(6200..>6963)
                     /locus_tag="KIL20_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD2721196.1"
                     /translation="PESIFVDKNYVYVSNVGEKLEPLAKDNDGFISKLDKNGKVLEYK
                     FLTHLNAPKGMMEIGKTLYVVDIDVLRGFDLKTKKEIFNLPIKGAIFLNDIEKLDDNT
                     LLVSDTGTGLILKVDLKTKQYDELLKLDLAKFGGPNGLYLDRKKHKLFIAGYHPDGVS
                     GGVVMAYDLNTKELSIIKNEKESYDGIVPYKDGLLVSSWGNNLNGYIYNLDNVKSVKL
                     ELPLMKGPADIFIEGNILWIPKMAEGKIFKVELNK"
BASE COUNT         2406 a         1183 c          909 g         2465 t
ORIGIN      
        1 caaaatcaat cttgataaac aacataggct taagcatatt attttgctca aaaattaatc
       61 taaaagtttt aaaatgagca tcttgtaaat tctctatacc ttcatttgtg cttttgcgat
      121 atttttgatc taaaactttt aagaaataac ggcgctgtgg aatttcattt tcttcaaaaa
      181 aagaaaaaat tttatttttt cgtcctatga cctttgtgaa atttttggta atcaagtctt
      241 taaaatactg aaatacgcta atatcatctg tattaacatt gatagtttct aaagtttgca
      301 cgatttgcat ctatttctcc cataaaacct cattttcaaa aagctcttta gtgcctttta
      361 aaatttcatt gggtgtataa tcggctttat aagataaaga ttgacacttt tttacaaaat
      421 acccaagata aatataatct aagttcattt ttttagctat ttgtatttca ttgagcaaag
      481 aaaatttacc caaagaaaaa tacgaaaaat caggatcata aaaacaataa atgcttgaaa
      541 ttccatcctc taaaatatca atcaaatcaa cgcaaacgag cttatcttct atataaaatg
      601 caagctcata tccaaaattc ataaaaccat caacataaag attataatac tgtttaaagc
      661 ttaaatcata acgcttccag ttcttttttt cttccataaa acgatggtat ttatcatata
      721 aaaacaaatg ttcattgctt aaattgggtg ttctaagtat aactttggtg ttaatatttt
      781 tatttataac ccttctttca cttcttgaaa aattatattc attaactaaa attctaagac
      841 ttaaacattc atcacaatct ttacaaatag ggcgtgaaaa atacctacca aaacgacgcc
      901 aacctcgttt tattagctca ttattgattt ctttagagca attttcaatg tatttatact
      961 ctattcttga gcgtttatct tttaagtaag gacactgatc ttcaagagta caaaaaccaa
     1021 tctcaagcat taaattttct taatatctgt atttttgata aattcggaaa attcatcctg
     1081 tagtttttct tgctttaaga aaatttcttg catttcctta tctatgtttg tttcttgatt
     1141 tttttcgcga atatctttgg ctagtttttc taaatttttt acacttgctc cactcttgct
     1201 tgatttcttc gctaattttg aagtattggt gttagcttgc atttcttttt taatactttt
     1261 aagactgtct aaaaaatcca tctattattc cctactttct cgtatttttt taagcgtagc
     1321 agctattgca gctataactt cttctttatt ttcttgatga cgatcttctg ttttttctaa
     1381 taattcttgc atatgtgtct ctatgaaaga ggtgtctaaa tacccccttc taaattctct
     1441 tgtttttgta atggcaatta aaaatggtat tgttgttcta atatcatcaa tcacaaattc
     1501 cttcaaagca cgctcaagtt tattaaccgc taaatcataa cttgttgctt taataataag
     1561 ctttgcaagc atggaatcat aataaggcgg cacagtatag tctttataaa tatgactatc
     1621 aactctaaca gatggtccaa gagctgggta gtattctcct atttttccag gacttggaat
     1681 aaaatttttc catacatttt cagcagtaat tctagcttca atagcaaaac ccctaggttt
     1741 aatatcgctt tgttctaagt ccaaaatttc tcctgctgca atacgaattt gtcttacaat
     1801 aagatcaata cctgtaattt cttcagtaat tggatgctca acttgaattc ttgtattcat
     1861 ttccataaaa taaaagcgat tataatcatc aagcaaaaac tctatagttc cagcatttgt
     1921 ataacctaca gccttagcag ctgccacagc tgtaacaccc atggtttttc taagattatc
     1981 tgaaattcca gggcaaggtg ctatctcaat taccttttga tgtcttcttt gaatagaaca
     2041 atccctttca caaagatgga taatatttcc gtagttatct cctaaaattt gaaattctat
     2101 atgtctggga ttaactacat atttttccat aaatacttca tcattattaa agtatgttaa
     2161 agcttctctt ttgcaagatt caaaggcatt ttcaagatct tgttctttat gaacaacgcg
     2221 aattccgcgt ccacctccac cacctgaagc ttttaaaata acaggataac caatcttctc
     2281 agcaaaaatt ttaatttctt ccatgctata ggaatttaat ttttcagtcc ctggaacaat
     2341 aggtatgcca tttttagcca ttaacttacg agcgatattt ttatttccca tcttatggat
     2401 tacttcagat tttggaccta taaaaataat tccagcatct tcacaagcct tagcaaattc
     2461 gtaattctca cttaaaaatc cataaccagg atgaatcgca tcagcaccac aagccttagc
     2521 aatctcaaca atacgagcaa catctaaata tcctcttata gcatccgttc ctatgcgata
     2581 agcctcatct gcgattttta catgcaaaca ttcacgatca ggctctgtaa aaactgcaac
     2641 acttttaata tgcaaatctc tacaagcacg gattactcta acagctattt cagctctatt
     2701 tgctatgaga attttatgga tttgattcat aatttgcctt ttttgttata tttttattgt
     2761 taattttagc aaattttcct tacaaaaact tagcaaaaaa tttaatttat tttagttata
     2821 ataaaacttt ttaaaatttt aattccaata aagaaaagtt ataattataa tggttgctga
     2881 taaaagatta ttttatttaa gttgtatttt aatcaccata ggaatagtat tttcatactc
     2941 tcttacagct tttactgttc tttttcttga ctatagcgag tttcattttt ttattcgtca
     3001 gctttttttt ggaattagtg gcatacttat aatgtttttt atttctcgat tggatcctga
     3061 taaagcactt tctaaaaaaa ttattttagc tattttgatt atttctttta tctttatcat
     3121 cattttgcca tttttacctt ctgtattagc aacagctagc ggaggagcta aacgctggat
     3181 acgcttaggc ccactctcta tctctcctgt ggaatttttt aaaataggat tgatttattt
     3241 tttagcatgg agctatacaa ggcgtattga tgatagcaaa aaagctatca gacacgaggc
     3301 tttaattctt ctgccttatt gtatcttagc ttctatagtt ataggatata tttatatcac
     3361 tcaaaacgat ttaggacaaa gcgtaatttc tttctttttg attctagctt tagctttttt
     3421 tgcaggagct agtaaaaggc tttttgcttt tggaacttta atcattatga tgataggtat
     3481 aatggtaatt tttagcaacc aaagaagaat tcaaagaatc gcttcttggt gggggaatat
     3541 acaagatgct tttttaccta tgcttcctga ttggctggca aatgctttaa gagtaagcag
     3601 caatagcgag ccttatcaaa tttcacactc tttaaatgct atagcccatg gaggaatgtt
     3661 tggcgaaggc ctaggacttg gaacttttaa attaggcttt ttaagtgaag tgcatactga
     3721 ctttgttctt tcaggaatta ctgaagaaat aggactctta ggtcttggag ttatttgcta
     3781 tatttatctt tggatgattt taagaatttt tagaattgca ggaagatgtg aagctaaaca
     3841 agattttatt ttctgttcag gtatagcttt acttttactt ttttctttct ttatgaatgc
     3901 ttttggtatt atttctctta ctccactaaa aggtgtagcg gttccacttt taagctatgg
     3961 aggaagttca atgtgggcaa tttgtatagg cataggatat gtattaatga tttcaaaaaa
     4021 ggttaaatta tgacaatagc tttaacaggt ggtggaactg gaggacattt ggccatagtg
     4081 cgttgcttat tagaaagtgc gattaaaaaa aatatagaat gtgtatacat aggcagtcaa
     4141 aatggtcaag ataaagcttg gtttgaaaat gaagtacgct ttaaggaaaa atttttttta
     4201 agctctaaag gagtggttaa tcaaagcaaa tttggcaaaa tcagttcttt actccacacc
     4261 ttaaaactct ccaaagattg tagagaaatt tttaaaaaat accacatcca agccgttttt
     4321 agtgtaggtg gatatagtgc agctcctgca tcttttgcag ctttattctc acatttgcct
     4381 ctttttatac atgaacaaaa ttcaaaaagc ggctctttaa atatgctttt aaaacctttc
     4441 gctacaaaat tttttagcgc ctttgaaaaa gaaattagcc cttatcccgt agcagataaa
     4501 ttttttgata atgctaggat tcgcaaagaa ttaaaaaata ttattttcct aggaggatca
     4561 caaggagctc aatttatcaa cgaactagct ttaaatttag caccaaaact tcaagaacaa
     4621 aatatcaaaa tcatccatca atgtggaaaa aatgattttg aaaagtgcaa aaaacattat
     4681 caaagcttaa atatccaagc tgatattttt gattttagtt taaatttgga agaaaaaatg
     4741 aaaaatgcag atctagctat atcaagagca ggtgcaagta ctctttttga actttgcgct
     4801 aatactttac ccactatttt tataccttat ccttatgcag ctaaaaatca tcaatacttt
     4861 aatgctaaat ttttacaaga tcaagcttta tgtcaaattt ttatgcaaaa ctctattaat
     4921 cttgatgaat tttttaagtc aatattaaaa ctaaatctag aaaatatttc tacaagattg
     4981 caaaatataa cccaaaaaaa tggcgcagat atgctaatcc aaaaagcttt atttgataat
     5041 ttgactttta taagataaat atccaaagat atttactaaa attccaacaa aaactaacat
     5101 caaaatagca aatgaaaaat tttcaaattt atcatgcaaa aaacctataa tccattgtcc
     5161 ttgtgctgca attaaatatc caaaaccctg agctaaagca gaaagtctcg ctgctatttg
     5221 agcattagag cttttttgtg caataaaaag caacgcaatg ccaaaaactc caccccatgg
     5281 aaaacccatg ataaaagcac taataataat agaaattttg ctatcaaaaa taaagagtat
     5341 accaaaagcg atcacataca tactgcacaa acctgctatg taaaaagtat gtaaattttg
     5401 tcttaatttt cctaaaagta aagggccaaa aagagacact ggagctgcaa caagttgagc
     5461 aaataaaacc atacttgtag aaaattcttt atcaaatcct ttttctacaa caatttgaac
     5521 ataccaaaaa aacaaagaat aagctaaaaa actttgaaat cccataaaaa gagtaatttt
     5581 ccaagttgtt aaatttgtaa aaagattgat ttttttatga gcttttttct taatgcgaaa
     5641 aaatctacca tttttagctt gaggatagta aactactaaa gctataaaag aaaaaatagc
     5701 ccagaaaaac atagctccag ctaaatcaaa tacactaagc aaaggtatag ctaaagcaat
     5761 acccataatc gaagaaatac tcaaaacaag actataaatt cccattatac ttgccatttt
     5821 ttttggaaat ttttctttaa taaaactagg aagtaaaaca tttgcaattg caataccaca
     5881 gcccattgct aacattccta aaaataagcc atatacacca aaataagaac gaataatttc
     5941 gcctaaaaaa attaaaaaaa ttccaaaaac aatagcacga ataggagaaa aataccccac
     6001 aataaaagaa atacttccaa aagctatcaa aggaagactt gtaagtatgc ccgctacggt
     6061 tgagtttaaa taatacttat ctttaataat atcaataata ggccccactg cagtaattgg
     6121 ggctctaaga ttaaaagcta caataataac aataataaca ttaatccaaa atatcttttt
     6181 aaaagaagcc ataaaagcct tatttattaa gttctacttt gaatatttta ccttctgcca
     6241 tcttaggaat ccataaaata ttaccttcaa taaatatatc tgcaggacct ttcatcaaag
     6301 gaagttcaag ttttacagat ttaacattat ctaaattata aatatatcca tttagattat
     6361 ttccccaaga acttaccaat aaaccatctt tataaggaac tattccatca taagattctt
     6421 tttcattttt aattatactg agttcttttg tatttaaatc ataagccatt acaacaccgc
     6481 cacttacacc atcaggatga taaccagcta taaaaagctt atgttttttt ctatctagat
     6541 ataacccatt tggaccgcca aattttgcta aatcaagttt taataattca tcatattgct
     6601 tagtttttaa atcaaccttt aaaataagtc ctgtgccagt atcgctaacc aaaagcgtat
     6661 tgtcgtctaa tttttctatg tcatttaaaa agattgcacc tttaataggt aaattaaaaa
     6721 tttctttttt agttttaaga tcaaaaccgc gtaaaacatc gatatctacc acataaagag
     6781 tttttccaat ctccatcata ccttttggtg cattaagatg ggttaaaaat ttatattcta
     6841 gcactttgcc atttttatca agtttagaaa taaatccatc attatctttc gccaaaggtt
     6901 caagtttttc tcctacatta gatacataaa catagttttt atctacaaaa atactttcag
     6961 ggt
//
LOCUS       DAEBKH010000083         6917 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.083, whole genome shotgun sequence.
ACCESSION   DAEBKH010000083 DAEBKH010000000
VERSION     DAEBKH010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6917)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6917)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6917
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.083"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..165)
                     /locus_tag="KIL20_001167"
     CDS             complement(<1..165)
                     /locus_tag="KIL20_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HBD2721197.1"
                     /translation="MMLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCY"
     gene            275..508
                     /gene="acpP"
                     /locus_tag="KIL20_001168"
     CDS             275..508
                     /gene="acpP"
                     /locus_tag="KIL20_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HBD2721198.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            534..1748
                     /locus_tag="KIL20_001169"
     CDS             534..1748
                     /locus_tag="KIL20_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HBD2721199.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDAGFSEELDKEEFGIVS
                     AAGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVIGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVISVMALRDGVVPPTINQLVKDDECDLDYVPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            1750..2688
                     /locus_tag="KIL20_001170"
     CDS             1750..2688
                     /locus_tag="KIL20_001170"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HBD2721200.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADRLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEAAAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            2840..4894
                     /locus_tag="KIL20_001171"
     CDS             2840..4894
                     /locus_tag="KIL20_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006655032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HBD2721201.1"
                     /translation="MKFKKSLLCFLILSGALLKAEEKYQLNDVVVSASGFEQDLVDAP
                     ASISIITKEELEKKPIKDIGEAIGDIPGVDVTMNKTGTYDFSIRGFGSSYTLVLIDGK
                     RQSVANGFYDNGFSGSESGYLPPLSMIERIEVIRGPASTLYGSDAVGGVINIITKKNP
                     DKTEANIEFNTLLQQHSNHYGNAGGFNAYVATPLIEDTLSISARLKYYDKAASDLKWP
                     TPVWNNSQQRPDNYQIASHSPGAFTSLGFGSRLNWTVDDKNNIYFDIERYINEISVNS
                     TSSRAIKSERQLFKDNIVLNHDGNYDFGSTNSYLQYGSTKDKELHSQIWVGEGKVVLP
                     WNLGQYGNLVNTFGARIDYEMLKNDQASAGSQIRGKNLDQTTVALYGENEYFITDDLI
                     FTTGLRYIYSDLFDSEFTPRVYLVYHLNDNIAFKGGVSKGYKTPAAKELTNGYYNYSN
                     DNAYFGNPDLKPEESINYELGVDFRIFDFAHYSITGFITDFTNQISSEDLTGMQNGIN
                     CSNGTVCTRPINLGKTQTKGIEFAFNTKTYNGFSLNSSYTFMDNRYKDGQKNWFGGDR
                     IENLPRHIAMLKLNYERGKFSSYIKTRARLDTIAKAKGGGNGSLPWQKYKPFYIVDLG
                     INYKINKQSSLSFVVQNLFDKNFFDPQVTKWAGANPAGYANRYQDYTEGRSFWLSYKY
                     DF"
     gene            4977..5564
                     /locus_tag="KIL20_001172"
     CDS             4977..5564
                     /locus_tag="KIL20_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HBD2721202.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGKFCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDNMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFAEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNIIRTPLLDFAYMWFLKEKWEKY"
     gene            complement(5606..6703)
                     /locus_tag="KIL20_001173"
     CDS             complement(5606..6703)
                     /locus_tag="KIL20_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HBD2721203.1"
                     /translation="MFGSKINHSDLQKLEEENKNLAHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIVQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGDITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(6713..6904)
                     /locus_tag="KIL20_001174"
     CDS             complement(6713..6904)
                     /locus_tag="KIL20_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HBD2721204.1"
                     /translation="MSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLSSMEISTLK
                     KEKLHVKDELSQYLANYKK"
BASE COUNT         2337 a          889 c         1308 g         2383 t
ORIGIN      
        1 ataacatttt gcgtaattaa gcaaataaat ataatcttgc ttgagataaa aaagaaaatt
       61 ttcttgcttt aggcttttat cttccaattt tttaacaaaa tcatgatgta gataagcatt
      121 ccaaattttt tgattttctt tgattaaatt agagaaaagc atcatttttc ctttatgttt
      181 taatatttta ttttcaagta taatgaaaaa ctataaatat tttaagcttt ttatagtaaa
      241 atacgcttta ttttaatttt ttgaaggaga gcaaatggca acatttgatg atgtaaaagc
      301 agtagtagta gagcaattaa gtattgatgc agatgcagtt aaaatggaat caaaaattat
      361 tgaagattta ggtgctgatt ctttagatgt tgtagagctt attatggctt tagaagaaaa
      421 atttgaagta gaaattccag atagtgatgc tgaaaaatta attaaaattg aagatgttgt
      481 aaattatatt gacaatctaa aaaaataatt tttttcttgc aaggagctta ttcttgaaaa
      541 gagttgtagt tacaggtatt ggcatgatca atgcccttgg tttagataaa gaaagttcat
      601 ttaaagcaat ttgcaatgga gaaagcggag taaataaaat tactcttttt gatgccacag
      661 actttcctgt tcaaattgca gctgaagtta aaaattttga tccattagag gttgttgatg
      721 gcaaagaagt aaaaaaaatt gaccgtttca tacaacttgg aattaaagca gcaagagaag
      781 caatgcagga tgctggattt agcgaagaat tagacaaaga agaatttggc attgtttcgg
      841 ctgctggtat cggaggtttg cctaacatag aaaaaaattc cattatttgt tccgagcgag
      901 gtccgcgtaa aatttcccct tttttcatac cttcagcact tgtaaatatg ttaggaggtt
      961 tgatttctat agagcatgga cttaaagggc caaatatttc ttgtgttaca gcttgtgcag
     1021 caggaactca tgctatagga gaagcttata aaagtatagc tttgggaaat gctaaaaaga
     1081 tgttagtcat aggtgcagaa gctgcgattt gtcctgtggg tataggtggt tttgcttcaa
     1141 tgaaagcttt atcaactaga aatgaagatc cacagcatgc ttcaagacca tttgacaaag
     1201 aaagagatgg ttttgtcatg ggagaaggtg ctggagcttt agtttttgag gaatatgaag
     1261 aggctaaaaa acgcggtgct acaatttatg ctgaattaat tggatttgga gaaagtgcag
     1321 atgcacatca tattacttca ccaactttag atgggccttt aagagctatg aaaaaagctt
     1381 taaatatggc agggaatcca aaggtagatt atatcaatgc acatggaact tcaacccctg
     1441 taaatgacaa aaatgaaaca gcagcaatta aagagctttt tggcaataat atcccgctta
     1501 taagttccac caaaggacaa acaggtcatt gcttgggtgc cgcaggtgca attgaagcag
     1561 ttattagtgt tatggcctta agagatgggg tagttccacc tacaatcaat cagctcgtaa
     1621 aagatgatga atgtgatctt gattatgttc caaatatatc aagaaaagta gatttaaaag
     1681 tggtgatgag taattctttt ggttttggtg gcacaaatgg ctgtgttgta tttaaaaaag
     1741 tagattaata tggcttctta tttagatttt gaaaaaaata ttcagcaaat tgatgaggat
     1801 attatcaatg ctcagattaa aggagatact gaagctgtat cgattttaaa gaaaaatctt
     1861 gaaaaagaaa tttctaaaac ttataagaat ttaagtgatt ttcaacgttt gcaattagcg
     1921 cgtcatccag atcgccctta tgctcttgac tatattgaac ttattttaaa tgacgctcac
     1981 gaaatacatg gtgatcgtgc ctttagagat gatcctgcta ttgtttgttt tatgggttat
     2041 ttaggagaga aaaaaataat tgtaattggt gagcaaaaag gacgtggaac aaaagataaa
     2101 atcgctagaa attttgggat gccacatcct gaaggatatc gtaaagcctt aagagtagca
     2161 agacttgcag agaaatttca aattcctatt ttatttttga tagatactcc aggtgcttat
     2221 cctggaatag gtgctgaaga aagagggcaa agtgaagcta tcgctagaaa tttatatgaa
     2281 ttaagtgatt tgaaaatacc gaccattgct atagttatcg gagaaggcgg tagtggcggg
     2341 gcgttagcta taggggttgc agatagactt gcaatgatga aaaattctgt tttttcagta
     2401 atttctcctg aaggttgtgc tgcaatactt tggaatgatc ctgcaaaaag tgaagctgca
     2461 accaaggcta tgaaggtaac ggctgatgat ttaaaatctc aaggtttaat tgatgatgtt
     2521 atagatgagc ctacaaatgg tgcacatcgc aataaagaag ctgcagcagt agctattgct
     2581 gattatgtaa aaaaatctct aaatgaactt gaaaatattg acgtacgaga actttctgca
     2641 aatcgtatgc agaaaatttt aaagcttgga gcctatcaag aggcttaggc ttttacttcg
     2701 cttttttaaa taattttatt atttataatt gttatcaaaa ttaagttaat taaaagtatt
     2761 ctttttttat acttcaaaaa tgattttaaa tatcaaaata attattttta aaggaattaa
     2821 tttgactcaa attaaaaata tgaaatttaa aaaaagttta ctgtgttttt taattttatc
     2881 tggagctttg ttaaaagcag aagaaaaata tcaacttaat gatgttgtgg ttagtgctag
     2941 tggttttgaa caagatttgg ttgatgcgcc tgctagtatt tctatcatta caaaagaaga
     3001 gcttgaaaaa aagccaatta aggatatagg ggaggctata ggagatattc caggtgtaga
     3061 tgtgactatg aataaaacag gcacttatga ttttagcata cgaggttttg gtagttctta
     3121 tactctagtt ttaattgatg gaaaacgtca aagtgttgca aatggatttt atgataatgg
     3181 ctttagtggc agtgagtcag gttatcttcc acctttatct atgatagagc gtattgaggt
     3241 tatacgtggt ccagcttcta cgctttatgg cagtgatgct gtaggcggtg tgataaatat
     3301 tatcactaag aaaaatcctg ataagactga ggcgaatata gaatttaaca ctcttttgca
     3361 acagcactct aatcactatg gcaatgctgg gggatttaat gcttatgtag caactccttt
     3421 gattgaagat acattatcaa tttctgcaag gttgaagtat tatgataagg cagcttctga
     3481 tttaaaatgg cctacaccgg tttggaataa tagtcaacaa agacctgata attatcaaat
     3541 tgctagccat agtccaggtg cttttactag tttaggtttt ggttctaggc ttaattggac
     3601 agtagatgat aaaaataata tatattttga tatagaacga tatattaatg aaatttcagt
     3661 gaattctaca agtagtaggg ctattaaaag tgaaagacaa ctttttaagg ataatattgt
     3721 tttaaatcat gatggtaact atgattttgg ttcaactaac tcatatttac aatatggtag
     3781 cactaaggat aaggagctgc atagccaaat ttgggtagga gaaggtaagg ttgttttacc
     3841 ttggaattta ggtcaatacg gtaatttagt aaataccttt ggtgcaagga ttgattatga
     3901 gatgttaaaa aatgatcaag caagcgcagg tagtcaaata agaggtaaaa atcttgatca
     3961 aaccacggtt gcgctttatg gggaaaatga gtattttata acagatgatt tgatttttac
     4021 tacaggtttg cgttatattt atagcgattt gtttgattct gaatttacgc ctagggttta
     4081 tttggtttat cacttaaatg ataatatagc ctttaaagga ggtgtttcaa aaggctataa
     4141 aactcctgct gctaaggagt tgacaaatgg atattataat tatagcaatg acaatgctta
     4201 ttttggaaac cctgacttaa aaccagaaga aagtataaat tatgaattgg gtgttgattt
     4261 taggatattt gattttgcac attattctat cacaggattt attactgatt ttacaaatca
     4321 aatcagtagt gaagatttaa caggtatgca aaatggtatt aattgtagca atggcactgt
     4381 ttgtacgcgt cctattaatc ttggaaaaac acagactaaa ggtatagaat ttgcatttaa
     4441 taccaaaact tacaatggct ttagcctaaa ttcaagttat acttttatgg ataatcgcta
     4501 caaagatggt caaaaaaatt ggtttggtgg tgatagaata gagaatttac caaggcatat
     4561 agcaatgtta aaattaaact atgagcgagg taaatttagc tcctatataa aaacacgagc
     4621 aagacttgat actatagcca aagcaaaagg tggcggtaat ggtagtttgc catggcaaaa
     4681 atataagcct ttttatatag tagatttagg gataaattat aaaatcaata agcaatctag
     4741 cttaagtttt gtagtacaaa atctttttga taaaaatttc tttgatccgc aagttactaa
     4801 atgggctgga gccaatcctg ctggatatgc aaatcgttat caagactata cagaaggaag
     4861 gagtttttgg ttgagttata aatatgattt ttaatttttt aaggctttaa ttacctttat
     4921 attttcaaaa aagcaaaaat aaagtacaat gtgaaaaata aataaaaggt tttattatgg
     4981 cgtttaaaaa tttaaaagaa ctttcttttg aaaaatcaaa ttatattaag cctaagagat
     5041 ttgcttatga aagtaatggt aagttttgta cttgggattt tatagaatct aaagatagtg
     5101 tttcagtgct tttgtatcat aaagaattag aaagttttat ttttgtacgc caatttcgta
     5161 taccactttg gtatcatcaa atgcatgata aagattatgt aaaagatgat aatatgggct
     5221 atactataga gctttgttct gggcttgtgg ataaaaaatt atctttagag gaaatagcaa
     5281 aagaagaatg tatagaagaa ctaggatatg ctcctaaaaa tttagaaaaa ataggagatt
     5341 tttatacagg gtttggttca ggtgtaagca agcaaagctt ttatttcgca gaagttgatg
     5401 aaaaagataa aatttcttca ggaggtggag ttgatgatga agagattgaa gctgtttatg
     5461 ttaaggtgca ggattttgaa aaaaaatgta aaaatataat aagaacgcct ttgcttgatt
     5521 ttgcttatat gtggttttta aaggagaagt gggaaaaata ttaaagatta tttaggttaa
     5581 accttaaaaa ggttcaacct aggatttaat gatctgattc atcaagcatt tctttaaata
     5641 cattgaaaag atcaagcgat gcattttcag caacttcgca tttattaatt atgctgtgtt
     5701 gagtaatatc tttgctaata tcttctgtat ttgctattgt tatagcatta ttcatatttt
     5761 catgaacttt ttcatgtggc tcgttaattt ttaagaagct tttattttgc ccaaatcttt
     5821 cttttcctgt gctagcaagc cattttccta agcgacaaga tgtatgatcg gctaattgct
     5881 ttcctgattt ggaaaaaatt tctttataac catttaattt aaaagctata tgatctagtt
     5941 ttgctaaaga tacgaaagct tctgaagcga taccaactgc atttgaatta gtagaatgcg
     6001 cttcatttac taagtgggta aatttttcgg aaaaactcat aatatgagca ttagaatcta
     6061 tagaaatttt ttcaacttgc tcactttgag tatacatttc atttgcattt tgctttagaa
     6121 ggttgatatt catttcaact tctgtggttg ctttttgtgt tttttcagct agttttctta
     6181 cttcatcggc aacaacagca aaaccacgcc catgttcacc tgcgcgtgca gcttctatgg
     6241 cagcgttaag agctaaaaga ttggtttgat cggaaacatc tttaattaga ttaattacat
     6301 tagtaatttc atctacactt ctatgcaatg ttcctgcaac atctcttgtt ttattggctg
     6361 attctgtaat atcccctaag gaagcattga tagaattagc aatatggtta agttcatcca
     6421 tttcagcaag agaagtttta gaatagctag agataacttc tgccttattt acattttcta
     6481 acatatcgcc ttgaacaata gtaatatttt ttaaaacccc agttaataaa acatttaaaa
     6541 gatctgtttt aagtttagac tctaaagccg cttgttctaa tgatgtaatt ttatttttta
     6601 attctaaatt ttccgattga aatttttcaa ttttatgtgc aagattttta ttttcttctt
     6661 caagtttttg aagatcagaa tggtttattt tacttccaaa cattgttttg ccttattttt
     6721 tataatttgc tagatattgg ctaagttcat cttttacatg aagcttttct ttttttaaag
     6781 ttgaaatttc catgctgcta agagaagttc taccttcttc tgcatcttta atcatgtcat
     6841 caagttcatt atgacgatca aatagtttat caaaatgagc atctttacct tttagctctg
     6901 acattaattc tctatat
//
LOCUS       DAEBKH010000084         6851 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.084, whole genome shotgun sequence.
ACCESSION   DAEBKH010000084 DAEBKH010000000
VERSION     DAEBKH010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6851
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.084"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..1514
                     /gene="mrdA"
                     /locus_tag="KIL20_001175"
     CDS             <1..1514
                     /gene="mrdA"
                     /locus_tag="KIL20_001175"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HBD2721205.1"
                     /translation="LNASKLAEIYKRNDSYYNQDFIKVVDFIPYDEIIPHYSELNLNK
                     TIKIDPVVKRKYPFGKLASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDIL
                     QGEKGTRVYKVNALNQEVEQLSYTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMN
                     VNDGSILAAGSFPEYDLNPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMG
                     VGLSFLNSKNISPSTQYVCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNG
                     SLQVGIDQISETLSRIGFGAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAI
                     GQGNFLATPMQIARYTAQIAKGGEVIPHFLKSIENNNNTTIENQMDENKKEIFTLFEK
                     SQLPYIRDAMYAVANEQGGTSYRYLHNLDVKVAAKTGTAQVVGFSQTDKNRVDEKQFE
                     YYTRSHAWLTSYAPYSKPKYVVTVLLEHGGRNITSGATVAKIYQKMIELGYFK"
     gene            complement(1635..3425)
                     /locus_tag="KIL20_001176"
     CDS             complement(1635..3425)
                     /locus_tag="KIL20_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HBD2721206.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDVKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLQINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNVTSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAVKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDAKASEFRAQSKHYISDSFATIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDIAMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDYPKALVWLEKRTKAIF"
     gene            complement(3441..4994)
                     /locus_tag="KIL20_001177"
     CDS             complement(3441..4994)
                     /locus_tag="KIL20_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HBD2721207.1"
                     /translation="MSKNVKNLDTSFFGHPKPLLSLSLTELWERFSFYGIRPLLYLFM
                     IASFEKSGMNLKPEEASAIMGIFASCLYLAALPGGWLADNYLGQKRAILLGALTIAFG
                     HLCIAFSYFNNKIIFVGMVFLVIGTGLFKTCASVMVGMLYKKNDARRDSGFTLFYMCF
                     NFGAFVAPLICGFLQKEYGWHFGFGAGGIGMLLAVIIFYLKTMPDLKEFDEKVGIDST
                     WDRPSKKSKNAFYIIIVSGIVLLGAIFLILGGFIKLDAQVINKNIILTILACAGIYFL
                     YLFAFTSLKIEEKRNLIIFIVLFLAAALFWSVYEQQYTSFNFFAEKLTDKTILNYEIP
                     TIWFQSLGGLFVILFAPFSAFIWTICAKNNKEISSIIKFALGLLGAALAFLIMALASN
                     HAISLNGDANTLRENLENSSQIILVSPWWLVSSFLLMVLGELCLSPVGLSIMTKIAPN
                     LIKSQVMGLWFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAVIILLILK
                     KPINKILKN"
     gene            complement(5166..6695)
                     /locus_tag="KIL20_001178"
     CDS             complement(5166..6695)
                     /locus_tag="KIL20_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HBD2721208.1"
                     /translation="MTKQEIQKLDTNFLGHPKPLFSLSMVELWERFAFYGIRSLLVLF
                     MATTISKGGLGISTEYASAIYGIFAGCLYLAALPGGWITDNYLGQKKALFLGSFIIAL
                     GHISIALSILSTPIFFLGLTFIVIGTGFFKTSASVTVGMLYKQNDTRCDTGYTIFYIG
                     INIGAFIAPLICGFVQAKWNYHLGFGIGGLGMLISLLILYFKATPELEEFHKNCTLKQ
                     NWEQPFKKSKNLTLILSISLLSIIGFFLIFINLADINPIILSKKLLIVILLCLVIYFI
                     YLFVFKTLNKREKQQLTILIVLFFVATFFWSTFEQKPTAYNLFAQDFTNRNIFDWKIP
                     TNWFQSFNPIFIIILAPIASYIWIFLEKKNIYFSSIGKFTLGILFAGIGFMMMTFASQ
                     NLINNNGLPISMVWIIISIFFLTLGELCVSPVGLSIMAKVAPDLIKNQIMGLWFVASA
                     LGNFVAGLIGGNVNIKNIDQLPNIFGQCMWMLFVVALLLFIAKKPIYKILNEKNKQLS
                     N"
BASE COUNT         2438 a         1031 c         1021 g         2361 t
ORIGIN      
        1 atttaaatgc tagtaaatta gcagaaattt ataagagaaa tgattcttac tataatcaag
       61 attttattaa agtagtagat tttataccct atgatgagat tattccgcat tattcagagt
      121 taaatcttaa taaaacaata aaaatagatc ctgttgtaaa aagaaaatat ccttttggaa
      181 aattggcttc gcatattatt gggtatgtag gtaaggcaaa tttgcaagat gttcaagaaa
      241 atgaaatagc aaaactttct aactatacgg gaaaaagcgg tatagaacgc tattataatg
      301 atattttaca aggagaaaaa ggaactaggg tttataaggt taatgcctta aatcaagaag
      361 tagaacagct ttcttacact cctgctatgt ctaatgatat agaacttacg atagatatag
      421 agcttcagtc ttatttaact tcattgtttg aagggaatgc tggagctgct ataattatga
      481 atgtaaatga tggatctatt ttagctgcag ggagtttccc tgaatatgat cttaatcctt
      541 ttgtaacagg gatttctttt aaggattggg atgagctttc aaatagtctt gatcatcctt
      601 ttacaaataa acttataaat ggatattatc ctccaggttc tgttgtaaaa atgggagtag
      661 ggctttcttt tttaaattct aaaaatatta gcccgtcgac tcaatatgtt tgcaatggaa
      721 gcattgagct tggaggcagg ttttttagat gttggaatcg atcgggccat ggacctgtgg
      781 atttaaaaca tgcgataaaa tatagttgtg atgtttattt ttataatggc agtttgcaag
      841 ttggaatcga tcaaataagt gaaactttat ctcgcattgg ctttggagcg aaaacagggg
      901 tagatttacc tagtgaattt gtaggaactt taccaagcaa agaatggaag atgcaaagat
      961 atagacaatc ttggtttcaa ggtgatactt taaatacagc tataggtcaa ggtaattttc
     1021 ttgcaacacc tatgcaaatt gctagatata cggctcaaat cgcaaaaggt ggagaggtta
     1081 tacctcattt tttaaaaagc atagaaaata ataataatac aactatagaa aatcaaatgg
     1141 atgaaaataa aaaagaaatt tttactttat ttgaaaagag tcaattgcct tatataagag
     1201 atgcaatgta tgctgttgct aatgagcaag gaggaacttc ttatcgttat ttgcataatc
     1261 ttgatgtgaa agttgcagca aaaacaggaa ctgctcaggt tgtgggattt tcacaaacag
     1321 ataaaaatag ggtcgatgaa aaacaatttg agtattatac tagatctcat gcgtggctta
     1381 cttcttatgc tccttattct aagccaaaat atgtagttac cgttcttttg gaacatggtg
     1441 ggagaaatat tacttcaggg gcaactgtag ctaaaattta tcaaaaaatg attgaacttg
     1501 gatattttaa ataattttta gttgtaaatt gagtttttca aaaaaaactt ttttagcaat
     1561 tggtttaaaa accttgtatt aaacaaatta taagtttaat acaaggaaaa tttatctatg
     1621 ttaacaaaag tatcttaaaa gatggctttt gttctttttt caagccaaac tagagctttt
     1681 ggataatcac ctagcttagg agaaagtttt tcaaatactt ctttgtgata attgtttaac
     1741 cattcttttt ctttttcatc taacattttt gtatcaatac aagatatttc aaaaggacaa
     1801 agagtaacag gtttaaagta taaaaactct ccaaaatctt tatttttagg attttctact
     1861 ttggtatgaa taactaaatt ttcaagtctt ataccccatt tacctacttt ataaatacct
     1921 ggttctatgg aggttagcat accttctttg gcttttgttt tttcaagcac aggggataga
     1981 taagataaaa cttgtggacc ttcatggaca tttaaaaaat atcccacgcc atgtcctgtg
     2041 ccgtgtatat agtcaatttg ttctttccat aaaggtgcgc gtgtgattgc atcaagtaag
     2101 ggcatagcta tatcttttgg aaaaattgca ctggaaatgg caatatgtgc ttttaaaacc
     2161 aaggtatagt catgaatttg ttctgcatta gcctttccta ttggtacaac gcgtgtaata
     2221 tctgttgtgc cgtttttata ttgtccacca gaatcaataa gtaaaagccc atctttttta
     2281 agataagcaa aactctcttt tgtggcttta taatgtggat atgctgcgtt ttcgttaaag
     2341 cctgctatag tggcaaaact atcacttatg tagtgcttgc tttgtgctct aaattcgctt
     2401 gctttagcat ctatgtctaa ttcgcttatt aattctttat tttctatcgc ttcttcaagc
     2461 catgcaaaaa atttacataa agccactcca tcttctatca tagcatcttg tatatgcgct
     2521 atttcttttg tatttttaac tgcttttaag tgagtgcttg gattaatttc ttgaatgatt
     2581 tttacgcttt tgtctaaaga atttatgagt aaagcggtca tttttgaagg ttcaataagc
     2641 aaatttgtat ttgcaagttt ttcaagctcc atgatgattt catcataatt tttaagccaa
     2701 aacccatcta aatttaattt tttttcaagt tctgaattta cttttttctg atcaacaaaa
     2761 agcaaagctt tgtcttccaa gattagcaaa tgacttaaaa atacaggatt ataatttaca
     2821 tcattccctc ttaaatttgt aagccaagct atatcatcaa ggctggagat taaatgagag
     2881 gtaacattta aatttttcat tttttgacgc actaatgcta atttttcttt tcttgagtaa
     2941 gagcagtatt ctagttcgtg ttcataaatt ttttcttgtg gtaaagtggg acgatctttc
     3001 caaagtggac ttatcaaatc tatatgtttt aaatttgcct tgcaattaat ctgtaaatct
     3061 ttttgcaaag ataaaggtaa aagtgcaaaa tcgatgccta aaatttgatc ttcgcttaaa
     3121 tttttttcca accatttggt aaaagtattt ttaacatctt gcttttgtaa aagtatgcca
     3181 ctaccttcta attccttttg tgcttgaagc caatatcttc catctaccca caaaaagccc
     3241 tcttcttgtg tgataagaac tgttccaaca gaacccttaa agccactgat aaagactctg
     3301 tttttgtaat attctggtaa atattcgctc aaatgaggat ccgcgcttaa gatgagatag
     3361 gcgtcaatat tattttcttt cattaatctt ctaagttcta atactctttg tttgtaaata
     3421 ctcatatttt ctccttaata ttaatttttt agtattttat tgataggttt tttgagtata
     3481 agtaaaatta taacagcacc aagtaatatc cacatacatt ggtaaaataa atttggcaaa
     3541 taagctatat tttcttcact tgctttacca cctatgaatc cagctaaagc attgcctaat
     3601 gcacttgcta caaaccaaag tcccatgact tgagatttaa ttaaattagg tgcaattttt
     3661 gtcattatag aaagtcccac aggggaaagg caaagctctc ctaaaaccat aagcaaaaag
     3721 ctactgacaa gccaccaagg tgaaactaaa ataatttgtg atgaattttc taaattttct
     3781 cttaatgtat tagcatcgcc atttaaacta attgcatgat ttgaagctaa agccattatt
     3841 aaaaatgcca aagctgcacc caaaagtcct aatgcaaatt taataataga tgaaatttct
     3901 ttattatttt tggcacatat agtccatata aaagcactaa aaggtgcaaa aagtataaca
     3961 aataaacctc caagagattg aaaccatatt gtaggaattt cataatttaa tatggtttta
     4021 tccgttaatt tttctgcaaa aaaattaaaa gaagtgtatt gttgctcata tactgaccaa
     4081 aataacgcag ccgctaaaaa taaaacaata aaaataatta aatttctttt ttcttctatt
     4141 tttaaagaag taaaagcgaa aagatataaa aaataaattc cagcacaagc taagatagtt
     4201 agaataatat ttttattaat aacttgtgca tctaatttta taaaaccacc aaggattaaa
     4261 aatattgctc caagcaaaac aatacctgat acaatgatga tgtaaaatgc gtttttgctt
     4321 tttttgcttg gtctatccca agtagagtct atgccaactt tttcatcaaa ttcttttaaa
     4381 tcaggcatag tttttaggta gaaaataatt accgctaaaa gcataccaat cccacctgca
     4441 ccaaaaccaa aatgccatcc gtattctttt tgtaaaaagc cgcaaattaa aggagctaca
     4501 aaagcaccaa aattaaagca catataaaaa agagtaaaac cagagtcacg ccttgcatca
     4561 ttttttttat aaagcattcc aaccattaca gaagcacaag ttttaaaaag tcctgtacct
     4621 ataaccaaaa aaaccatacc aacaaaaatt attttattgt taaaataaga aaaggctatg
     4681 cacaaatgtc caaatgctat agttaaagca cctagtaaaa ttgctctttt ttgtcctaaa
     4741 taattatccg caagccatcc acctggcaaa gcagcaagat ataaacaact tgcaaaaatt
     4801 cccataattg cacttgcttc ttcaggtttt aagttcattc cacttttttc aaaacttgct
     4861 atcataaaaa ggtaaagcaa gggacgaatt ccgtaaaaag aaaatctttc ccaaagctca
     4921 gtgagtgaaa gagataaaag tggttttgga tgtccaaaaa atgaagtatc taaatttttt
     4981 acatttttac tcaatttata tcctttgtgt atttttattt ataaattata gacaagaaat
     5041 taaaaaatat gtataacttt gtaatatttt taaatgattt atatcataat gttacttttt
     5101 ttgcaaatat aaaaaaagaa atattaagat caattttcaa ctttggtgta ttttgtattt
     5161 taagtttagt tagataattg cttatttttt tcgttaagaa ttttataaat tggtttttta
     5221 gcaataaaaa gtaaaagcgc tacaacaaaa agcatccaca tgcattgtcc aaaaatatta
     5281 ggaagttgat cgatgttttt aatattgaca tttcctccta taagtcctgc aacaaaattt
     5341 ccaagtgcgc ttgctacaaa ccaaagtccc atgatttgat ttttgattaa atcaggggca
     5401 accttagcca ttatagagag tccaacagga gacacgcata attccccaag tgttaaaaag
     5461 aatatactta tgataatcca aaccatggat attggcaaac cattgttgtt tattagattt
     5521 tgtgaagcaa aggtcatcat cataaaacca atgccggcaa ataatattcc taaagtaaat
     5581 tttccaatgg aagaaaaata tatatttttt ttctctaaaa atatccaaat ataacttgct
     5641 ataggagcaa gtatgatgat aaaaattgga ttaaaagatt gaaaccagtt tgttggaatt
     5701 ttccaatcaa aaatatttct atttgtaaaa tcttgcgcaa aaagattata agcggtaggt
     5761 ttttgttcaa aagtgctcca aaaaaaagtg gctacaaaga ataaaacaat taaaattgtt
     5821 aattgctgtt tttctctttt atttaaggtt ttaaaaacaa aaagatatat gaaataaatt
     5881 accaaacata gtaaaattac aattagaagt ttttttgata gtattatggg attaatatct
     5941 gcaagattaa taaaaattag aaaaaatcca ataatactta acaagcttat acttagtata
     6001 agagttaaat ttttactttt tttaaatggt tgttcccagt tttgctttaa agtacaattt
     6061 ttatgaaatt cttcaagttc aggggtagct ttaaaatata aaataagcaa agagattagc
     6121 atacctaaac ctcctatgcc aaatcctaaa tgataattcc attttgcttg aacaaaacca
     6181 catataagag gagcaatgaa tgctccaatg ttaattccta tataaaaaat cgtatagcca
     6241 gtatcgcatc ttgtatcatt ttgtttatac aacattccaa ctgttacaga agcgctagtt
     6301 ttaaaaaatc cagtaccaat aacgataaaa gtaagtccta ggaaaaatat aggtgtgctt
     6361 aaaatagata aggctatgct aatatgtcct aaagctataa taaaagaacc tagaaataaa
     6421 gccttttttt gccctaaata attatcagta atccagcctc caggaagtgc tgctaaatac
     6481 aagcatcctg caaaaatgcc ataaattgcc gaggcgtatt cagtgcttat tccaagtcca
     6541 cctttgctta tggttgttgc catgaaaagc acaagtaaag atcgtatgcc ataaaaagca
     6601 aatctttccc aaagttctac cattgataga gagaataaag gcttgggatg acctaggaaa
     6661 tttgtatcga gtttttgtat ttcttgttta gtcacttccc aatacctttc ttttttatgc
     6721 ttaaaatatt ttaactaata gtaatagaaa aataattaaa ttacaatatt tttaaatatt
     6781 ttttttataa aaatatttaa aaatataaca ttttaatatt attataaatt aacaaattta
     6841 aacattaaat c
//
LOCUS       DAEBKH010000085         6702 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.085, whole genome shotgun sequence.
ACCESSION   DAEBKH010000085 DAEBKH010000000
VERSION     DAEBKH010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6702)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6702)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6702
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.085"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..423
                     /locus_tag="KIL20_001179"
     CDS             <1..423
                     /locus_tag="KIL20_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721209.1"
                     /translation="ISLSGVEKFDLEEFKRFLESTEAKEKGMGSEVKKALENLEVPKT
                     QVPGVEKIPTPSVPNLEAKQVEQLFKDSDEENKNDNGEINIDNLNTPKMTPDIEEKIK
                     RDLIANPPQIFKENNASKPYHLPQTGYDIKLDENSTQN"
     gene            complement(420..929)
                     /gene="lolA"
                     /locus_tag="KIL20_001180"
     CDS             complement(420..929)
                     /gene="lolA"
                     /locus_tag="KIL20_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HBD2721210.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSDFIQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLVAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDVFKAK
                     IPQNYDIVR"
     gene            1030..3618
                     /gene="secA"
                     /locus_tag="KIL20_001181"
     CDS             1030..3618
                     /gene="secA"
                     /locus_tag="KIL20_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HBD2721211.1"
                     /translation="MFLNTLKAVFGTKNDREVKKYFKRVAQINALEGKYQNLSDDELK
                     AEFAKFKEQILSGEKNENDILNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVILS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKVEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANSKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKNIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMSRLGIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEVQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            3615..4820
                     /locus_tag="KIL20_001182"
     CDS             3615..4820
                     /locus_tag="KIL20_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD2721212.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYISTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALRDENLSGFDILVGSALIDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGMPKNPN
                     YDGIHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPADVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            4843..5628
                     /locus_tag="KIL20_001183"
     CDS             4843..5628
                     /locus_tag="KIL20_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HBD2721213.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSVIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELIRGTPLLVQVLLMYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLILTLPISIFSRYLERKCQK"
     gene            5690..5765
                     /locus_tag="KIL20_001184"
     tRNA            5690..5765
                     /locus_tag="KIL20_001184"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5723..5725,aa:Lys,seq:ttt)
     gene            5773..5848
                     /locus_tag="KIL20_001185"
     tRNA            5773..5848
                     /locus_tag="KIL20_001185"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5806..5808,aa:Val,seq:tac)
     gene            5900..5976
                     /locus_tag="KIL20_001186"
     tRNA            5900..5976
                     /locus_tag="KIL20_001186"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5934..5936,aa:Asp,seq:gtc)
     gene            5981..6056
                     /locus_tag="KIL20_001187"
     tRNA            5981..6056
                     /locus_tag="KIL20_001187"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6014..6016,aa:Lys,seq:ttt)
     gene            6076..6151
                     /locus_tag="KIL20_001188"
     tRNA            6076..6151
                     /locus_tag="KIL20_001188"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6109..6111,aa:Arg,seq:tct)
     gene            6158..6233
                     /locus_tag="KIL20_001189"
     tRNA            6158..6233
                     /locus_tag="KIL20_001189"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6191..6193,aa:Val,seq:tac)
     gene            6285..6361
                     /locus_tag="KIL20_001190"
     tRNA            6285..6361
                     /locus_tag="KIL20_001190"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6319..6321,aa:Asp,seq:gtc)
     gene            6428..>6702
                     /locus_tag="KIL20_001191"
     CDS             6428..>6702
                     /locus_tag="KIL20_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721214.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDS"
BASE COUNT         2265 a          878 c         1277 g         2282 t
ORIGIN      
        1 atatctttaa gcggagtgga aaaatttgat ttagaggagt ttaaacgctt tttagaaagc
       61 actgaggcta aagagaaagg tatgggcagc gaggtaaaaa aagcacttga aaacttagaa
      121 gttcctaaaa ctcaagttcc tggtgttgaa aagatcccaa ctcctagtgt tccaaattta
      181 gaagccaagc aagttgaaca gcttttcaaa gattcagatg aagaaaataa aaatgacaat
      241 ggagaaatca atatagataa tttaaataca cctaaaatga ctccagatat agaagaaaaa
      301 attaaaagag atttaatcgc caatcctcca caaatattca aagaaaataa tgcaagcaag
      361 ccttatcatt tgccacaaac aggctatgat ataaagcttg atgaaaattc aacgcaaaat
      421 tagcgaacta tatcataatt ttgcggaatt tttgccttaa aaacatcgga attaattttt
      481 ggatttttaa tttgattgtt tagattgatt ataacatcat tttcaaattc atctttatag
      541 gatatgcttt gaatttgctc ttgattaagc ttaattgtat agtttatatt atcatatttt
      601 gctacaagtt tatctttgtc tataagactt gcttttttga aaatttcatt aagatttgga
      661 atgttatcaa gatgagagaa aatgacttgt tctagatcgt gctctactat ggttacttga
      721 tttttgttaa tataaatctc ttttttacta ggagtatcat aactccaata tgcttgatcc
      781 ttactcagta taaaatgtcc agaataagaa agtgtagagt ttttggattt tactatttgg
      841 ataaaatcgc ttgaaaaggt attaaaatta agatcaaggg caaaaagttg tcctataaaa
      901 ataaaaaata tcaagaatgt ttttttcatt tattttcctt aaaaaaatta tattttttat
      961 atcattctag ctaattttaa ttaaataatc gttataataa tagtttgaaa aatttataaa
     1021 ggtttaaaaa tgtttttaaa taccttaaaa gccgtttttg gaacaaaaaa tgatcgtgaa
     1081 gttaaaaaat actttaagcg tgtagcacaa atcaatgctt tagaaggcaa atatcaaaat
     1141 ttaagcgatg atgaattaaa agccgaattt gcaaaattta aagagcaaat tttaagcgga
     1201 gaaaaaaacg aaaatgatat cttaaatgat gtttttgcta tagtcagaga gacaggtaag
     1261 agaactttaa atatgcgtca ttttgatgtg cagttaatcg gtggtatggt tttgcacgat
     1321 ggaaaaattg cagaaatgaa aacaggggag ggtaaaaccc ttgtagcgac cttgcctgtt
     1381 gttttaaatg ccatgagtgg aaaaggcgta catgtcgtta cagtaaatga ttatctagcc
     1441 aaaagagacg ctgagcaaat gagtgcgatt tataactttt taggttttag tgtaggcgtg
     1501 attctttctt ctcaaaacag tgacatagag cacaagcaag cttatgattg cgatattact
     1561 tatggaacca ataatgagtt tggttttgat tatttgcgtg ataatatgaa attttcaaaa
     1621 gttgaaaaag ttcaaagaga gcataatttt gttattgtag atgaagtaga tagtatttta
     1681 attgatgagg caagaactcc gcttatcatc agcggtccta caaatcgcac tttagatggt
     1741 tatattaaag ccaatgaagt agccaagcaa atgcaaaaag gcgaagcagt tttaccccct
     1801 gcaaaacctg agggtgattt tgtagtagat gagaaaaatc gtaatatttt aatcacggaa
     1861 gcaggtattg ctaaggctga aaaacttttt ggtgtagaaa atttatacag tcttgataat
     1921 gctatcttag cacatcagct tgatcaagct ttaaaggcgc ataatctttt tgaaaaagat
     1981 gtgcattatg ttttaagaaa taatgaagtt atcatcgttg atgaatttac agggcgttta
     2041 agtgaagggc gtcgttttag cgaaggattg catcaagctt tagaagccaa agaaaatgta
     2101 aaaattcaag aagaaagcca aactttagca gatattactt ttcaaaatta ttttagaatg
     2161 tataacaaac tcgcaggtat gacaggaact gcacaaacag aagcgactga attttctcaa
     2221 atttatagtt tagatgttat ttctataccg acaaatattc ctattaaaag acaagataaa
     2281 gatgatctta tctataaaac tcaaaatgaa aaatttaaag ctgtaattga agagatcaaa
     2341 aaagccaact ctaaaggtca gcctgttctt gtgggaactg caagtataga acgcagtgaa
     2401 gtttttcaca atatgcttgt aaaagaaaaa atccctcatc atgttttaaa tgctaaaaac
     2461 cacgagcaag aagctttgat tatccaagat gcaggtaaaa aaggtgctgt aactatcgct
     2521 acaaatatgg caggtcgtgg tgtggatata aaaatcgatg atgagattag ggctttgggt
     2581 gggctttata tcatcggtac agaaagacat gaaagccgcc gtattgataa tcaacttcgt
     2641 ggtcgtgcag gaaggcaggg cgatcctgga ataagtcgtt tttatctaag tttagaagat
     2701 aatcttttaa gaatttttgg cggggatcgt attaaaaata ttatggatcg cttgggcata
     2761 gaagagggcg aaagcataga gtcaagaatt gttacaagag cggttgaaaa tgcgcaaaaa
     2821 aaagtagaaa gcttacattt tgaaagcaga aagcatttgt tagaatacga tgatgtagca
     2881 aatgaacaaa gaaaaactat ttatcgttat cgcaatgagc ttttagatga aaactatgat
     2941 attagagcta aaatttctca aaatatcgct gaatatagtg caaatgtaat gaatgattat
     3001 atgcttgatg aaagcggttc taatgtaaat tttgaaaatt tgaaagcaaa aattttatat
     3061 gaatgttcaa ctcagattag tgaaaaagat tttgagaatt taagcgtcat tgaaatgcaa
     3121 gataagctaa gtcaaattct tgaaaattct tataacgaaa agatgtcaag acttgggatt
     3181 aaagaattgc gtaatataga gcgtatttta tatttgcaag ttttggataa tgcttggaga
     3241 gagcatttgt atcaaatgga tattttaaaa acaggaatag ggcttcgtgg atacaatcaa
     3301 aaagatcctc ttgtggaata taagaaagaa agttataatc ttttcttgga gttggttaat
     3361 cgtattaaat ttgatagtat taagctactt tttagcgtgc aatttaatca agaagaggtg
     3421 caaaatttag aaaataaagc caatgaagaa aatgaaaagc tacttcaaag ctcagtagaa
     3481 atgggcgcaa gcgaagataa tcttggcgaa gctgagttta aaaaagttcc acgcaatgct
     3541 ccttgtcctt gcggaagtgg aaaaaaattt aaagaatgcc atggaaaaag tggtcctaag
     3601 caaggaattt tagcttgaat aaaagcgttt taaaatattt actttttaaa tatttaagat
     3661 ttgataaaga acaacccttt atcaatcttt ctatgctttt ggccttttta ggagtttgtg
     3721 taggactttg cgttttgctt gtagctatgg caattatgaa tggttttgat aaagaatttg
     3781 aaaaacgctt ttttgtgatg aattatccta ttactatttt gcctaaattt tacgctcctg
     3841 taaatgatga atttatagat gagttaagaa aaacatttcc aaatttgtta tttagccctt
     3901 atataagcac tcaagttgtt gtaaagggag ataatcgttt tgaaggtggt gtgctttttg
     3961 gcgttaattt taatgatgaa aaaaaaataa acgaagtggt tgctaaagct ttaagggatg
     4021 agaatttaag tggttttgat atacttgtag gatcagcact tattgatgaa tttggtttgc
     4081 ataaaaatga caaactttca cttatttttt caaatcttaa tcctagtgga ttttctttag
     4141 taccacaaac taaacgtttt gatgttaaag cgcgttttac ttcagggctt gcattttatg
     4201 ataaagctta tatgtataca gatgttgatg cattgaagaa agtacttgga atgcctaaaa
     4261 atccaaatta tgatggaatt catgtatata gcgataatgc ttttaaggat gttgaaaaaa
     4321 ttaaatctta tttaaaagat gattatgctg tagtaggttg gtgggaacaa aataaaaatt
     4381 tcttttcagc tttagagctt gagaaaagag cgctttttat agtgttgatg cttattattt
     4441 tggttgcaag tttaaatata gtaagttctt tattgatgat agtgatgaat cgtcgcagtg
     4501 aaatagcact tttacttgcc ctaggtgcaa gcaaaaatga ggtaaaaaag agtttttttg
     4561 ccttaggtat gcttattggt ggtggcggta tgatagtggg tgtggtgctt gcattttttg
     4621 ctttatggct tttaggaaat tttgatattg taactttacc tgctgatgtt tatggaacca
     4681 gtaaattacc acttgatttg tctttaatgg atttttcttt aaccattgtg ggtgctttaa
     4741 taatcatagc tttatcatct ttttatcctg caaaaaaagc aactcaaatt aatattttag
     4801 atactttaag aaatgaataa attgtaattt tggagatttt tattgtcttt gtttactcaa
     4861 aaaaataaga attttaaacc tttaaaacct ctatcaaagt caaaaataat cactaattta
     4921 attcttttga ttttattttt aatattgttt tgttattgta gttttagtat aagtgcttat
     4981 cattttgatt ttagcgtaat tgcgacctat aaagaaaaat ttcttcaagg ttttttaaat
     5041 actttaataa tcagtttttt ttctttatta ctgagtataa ttttgggtgg agttttttgt
     5101 gctttttctt taagttcaat tgttttttta agatttttat ctacatttta catagagctt
     5161 atcagaggaa cccctttact agtgcaggta ttattgatgt attatatcat tgcaaataat
     5221 ttaggacttg ataatcgata tgtggctgga gttattattt tatcatgttt ttctgctgct
     5281 tacttagctg aaatatttag agctggaatt ttaagtattt ctatatctca gcttgagagc
     5341 gctagggctt tagggttaaa agagatgcag gtttttgcgt atgtaatttt tccccaagct
     5401 ttaaaaaata ttttagcacc gctgagtgga caatttgcaa atttaattaa agatagttcc
     5461 ttattaagtg ttattgctgt aaatgaatta acccaaagtg cgcaagagat aaattcttat
     5521 acttttgcta ctcttgaagc ttatgtaatt ttggctatta catatcttat tttgacttta
     5581 cctataagta tattttctcg ttatttggag agaaaatgcc aaaaatgatt taaaaaagct
     5641 tgacaaatag agctaatttt ggcataatca catttttatt tcagaaaatg tctcgttagc
     5701 tcagccggta gagcatctcc cttttaagga gggggccgtt ggttcgaatc caacacggga
     5761 caccattata aaggtcgctt agctcagttg gtagagcgcc acccttacaa ggtggatgtc
     5821 ataagttcga gtcttatagt gaccaccatt ttataaaatc ataaataggt tttataatct
     5881 ctacttcttt actttggatg cagcggtagt tcagctggtt agaatgccgc cctgtcacgg
     5941 cggaggtcgc gggttcgagc cccgtccgct gcgccatctt gtctcgttag ctcagccggt
     6001 agagcatctc ccttttaagg agggggccgt tggttcgaat ccaacacggg acaccatttt
     6061 tattgttagg gttatgaccc tttcgtctag tggcccagga caacactctc tctgtgtgga
     6121 aacagaggtt caaatcctct aggggtcgcc aatcataggt cgcttagctc agttggtaga
     6181 gcgccaccct tacaaggtgg atgtcataag ttcgagtctt atagtgacca ccattttata
     6241 aaatcataaa taggttttat aatctctact tctttatttt ggatgcagcg gtagttcagc
     6301 tggttagaat gccgccctgt cacggcggag gtcgcgggtt cgagccccgt ccgctgcgcc
     6361 atcttgcttg gtaacaattt tataagtata atttgcaaaa taataaaaaa tagaactaag
     6421 gaaaaaaatg cttattattg gacataaatt attaaaaaat ttagattttt cttttattga
     6481 aagtgttgaa gaagttaaag ataataaagt ttattgtatt gtttatgatg aaaaattgat
     6541 ttcttattta agtcaaaatg attttgaatt tgctatttta gttcaaaata aagacgagat
     6601 atttttagcc aatgctttag gggctaagtt tttgctttgt aatgataaaa aacttgcaaa
     6661 atttgctagt aaggttgcag aattttatgt ttttgatagt ag
//
LOCUS       DAEBKH010000086         6646 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.086, whole genome shotgun sequence.
ACCESSION   DAEBKH010000086 DAEBKH010000000
VERSION     DAEBKH010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6646
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.086"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..819
                     /locus_tag="KIL20_001192"
     CDS             <1..819
                     /locus_tag="KIL20_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HBD2721215.1"
                     /translation="NLTARITANPRNPQLIELKNVLNKLLDVLQARVGSDMNAIHKIF
                     EEYKSLDFRNKLENASGSVELTTNALGDEIVKMLKQSSDFANALANESGKLQTAVQSL
                     TTSSNSQAQSLEETAAALEEITSSMQNVSVKTSDVITQSEEIKNVTGIIGDIADQINL
                     LALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDMAESI
                     KEQTAGITQINESVAQIDQTTKDNVEIANESAIISSTVSDIANNILEDVKKKRF"
     gene            900..1619
                     /locus_tag="KIL20_001193"
     CDS             900..1619
                     /locus_tag="KIL20_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HBD2721216.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLNISFQNKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFETWMQNNP
                     NVKFDLAFLSMSPALQNEKDYTNFLNLAKIKIYLGWADYRKSDFLDPIFKYFNTEFKG
                     FYKKDLENYLLEKNIFFHKIVFDETRKVQRTKEEAIENALWHLSMNKITTSKEAVSSF
                     VENDIIETIESKIKLLIINNL"
     gene            1675..1896
                     /locus_tag="KIL20_001194"
     CDS             1675..1896
                     /locus_tag="KIL20_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721217.1"
                     /translation="MVKNLIIKFGRLILDAIAAISFVVALLYSLFMMFSIGFLAGLLS
                     LIVSFIALFLSFFVIYLVIDIRDALVNKA"
     gene            complement(1921..2928)
                     /gene="pyrC"
                     /locus_tag="KIL20_001195"
     CDS             complement(1921..2928)
                     /gene="pyrC"
                     /locus_tag="KIL20_001195"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HBD2721218.1"
                     /translation="MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPTLC
                     NLEDLKAYKMRILKACKDENFTPLMTLFFKNYDEKFLYSAKDEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHFPRLK
                     IVMEHITTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDK
                     EALCELAFSGYEKVMFGSDSAPHPRDTKECCGCAAGVFSAPVILPVLAELFKQNSSEE
                     NLQKFLSDNTCKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQLK
                     H"
     gene            complement(2918..3163)
                     /locus_tag="KIL20_001196"
     CDS             complement(2918..3163)
                     /locus_tag="KIL20_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HBD2721219.1"
                     /translation="MKFENLIREILGKKRFELLKFLCENADENGFIMIKISDLEEKLH
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLNIGDKNET"
     gene            complement(3160..3516)
                     /locus_tag="KIL20_001197"
     CDS             complement(3160..3516)
                     /locus_tag="KIL20_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HBD2721220.1"
                     /translation="MKPKYHFLNNARYALEGLFALFKNEMAFRIELCIIIPAIVFSFF
                     LKVSFLEHLLLISVLILILIVEALNSAIEACVDLITNEWHEKAKIAKDCASAAVFFSV
                     LLALFVWGFILYNICL"
     gene            complement(3513..5051)
                     /gene="eptC"
                     /locus_tag="KIL20_001198"
     CDS             complement(3513..5051)
                     /gene="eptC"
                     /locus_tag="KIL20_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HBD2721221.1"
                     /translation="MLRLTWLQFTFFNSLMIVLLNFNLFYFVYEKNTQNWFITFVFIV
                     AYFALVHVICSLLFIKFFTKFFSILFIISSFLSVYFISFYGVLIDSDMIQNVVQTDIK
                     EVKDLLNLKLILFIVLALLLVFYVVKVKIDYYDSFKSHLKIKIINIISGLIVVCAVLI
                     PLSKTFLPFFRNYNEIRMYNTPFYQIYAVYRYYIRFVKAKPEFKTIANDAYRENNHTK
                     KLLVLVVGETARAANYSLGGYTKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSI
                     SKRENYSSSEFQENAMDVLYKTGVDTAWFDNNSGGCKGVCDRLAYKQKLSSDLDENLL
                     APFKEKLNHLSDQNIIVLHLQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDNKALIN
                     TYDNTLLYTDYLLSEIIKLLKEQKSYESSLFYLSDHGESLGENDIYLHGMPYAIAPSY
                     QTHIPAIFWSNDENLMNLAKEHKGLKLSQDNLFSTLLGYFDVKTSVYEPEYDLLNPKL
                     KANP"
     gene            5169..5927
                     /gene="xth"
                     /locus_tag="KIL20_001199"
     CDS             5169..5927
                     /gene="xth"
                     /locus_tag="KIL20_001199"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HBD2721222.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFDSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            complement(5946..>6646)
                     /locus_tag="KIL20_001200"
     CDS             complement(5946..>6646)
                     /locus_tag="KIL20_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721223.1"
                     /translation="MLGILKETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHF
                     EKERILKISSIILNTAFEIANESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANF
                     EEDVSLKSKELIGIEDDFIALLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGE
                     SREQLILVLNDIKKNPKINDFNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKL
                     GVRLWEKAKKFVKK"
BASE COUNT         2461 a          960 c          897 g         2328 t
ORIGIN      
        1 aatttaacag caagaattac tgctaatcca agaaacccac aacttattga acttaaaaat
       61 gttctaaata aacttcttga tgttttacaa gctagagtag gttctgatat gaatgctatt
      121 cataaaattt ttgaagaata caaaagctta gactttagaa ataaattaga aaatgctagc
      181 ggtagtgtag aattaactac taatgcttta ggggatgaaa tagttaaaat gctaaaacaa
      241 agttcagact ttgctaatgc tttagctaat gaaagtggaa aattacaaac tgctgttcaa
      301 agcttaacca cttcttcaaa ttctcaagct caatctttag aagaaactgc agcagcttta
      361 gaagagatca cttcttctat gcaaaatgtt tcagttaaaa ctagtgatgt tatcactcaa
      421 tctgaagaga ttaaaaatgt tacaggtatt ataggtgata ttgcagatca aatcaacctt
      481 ctagctttaa atgcagctat tgaagcagct cgtgctggag aacatggtag aggatttgca
      541 gttgtggctg atgaagttag aaagttagct gaaagaactc aaaagtcttt atctgaaata
      601 gaagctaata ctaatttact tgttcaatct atcaatgata tggcagaaag tattaaagaa
      661 caaactgcag gtatcactca aatcaatgaa agtgtagctc aaattgatca aactactaaa
      721 gataatgttg aaattgctaa tgaatcagct attatttcta gtacagtaag tgatatagct
      781 aataatatct tagaagatgt taagaagaaa aggttttaat tagtcattcg agcccaaaaa
      841 aagggcttga attttaaaaa tttatgctat gattttatat attttatcaa ggaaaatata
      901 tgaatttatg ggataaaaag gccaaaactt acgcaagata tcaaaacact ttaaacacca
      961 tacaaaagca aacttttgaa tatttacaaa atttaaatat ttcttttcaa aataaaagca
     1021 ttatagatat aggatgtgga actggggttt ggactttaca cttagctaaa gaagctaaag
     1081 aaattttagc cctagatagt gcaaatacta tgcttgaaat tttacaagaa gatgctaaaa
     1141 aactaaatct taacaatata aaatgcgaaa atttgagctt tgaaacttgg atgcaaaaca
     1201 atcctaatgt taaatttgat cttgcatttt taagtatgtc tcctgcttta caaaatgaaa
     1261 aagattatac aaatttctta aatctagcca aaataaaaat ttatcttggt tgggctgatt
     1321 atagaaaaag tgatttttta gatccgattt ttaaatattt taatactgaa tttaaaggtt
     1381 tttataaaaa agatttagaa aattatttac tagaaaaaaa tatatttttt cataagattg
     1441 tttttgatga aacacgcaaa gtccaaagaa caaaagaaga ggctatagaa aatgctctat
     1501 ggcatttaag catgaacaaa atcacaactt ctaaagaagc tgtaagttct tttgttgaaa
     1561 atgatattat tgaaactata gaatctaaaa taaaactttt aattataaat aacttataaa
     1621 aatattaagc tgatatttat tacaatttca ctcattattt caaaggagtt tttaatggtt
     1681 aaaaatttaa tcatcaaatt tggacgcttg attcttgatg caattgcagc gataagtttt
     1741 gttgtagctt tgctttattc tctttttatg atgtttagca ttggattttt agctggttta
     1801 ttatcgctga tagtcagttt tattgcttta tttttaagtt tttttgtaat ctatcttgtt
     1861 atagatatca gagatgctct tgtaaataaa gcttaaattt tccatcttta aggtgggaaa
     1921 tcaatgtttt aattgaaatt ttaaaatttc tccagccata taaggcacga cttgattgta
     1981 tttatcttca taaacatttg gtacttgcca ttctttttct tctaaagtta aaattttatc
     2041 ttctttaaat tttaaatcat aaattttaca agtattatcg cttaaaaatt tttgcaaatt
     2101 ttcttctgag ctattttgct taaataattc agctaaaaca ggtaaaatca ctggggcgct
     2161 aaatacacct gcggcacaac cgcaacactc tttagtatct cttgggtgag gcgcactatc
     2221 acttccaaac ataacttttt cataaccact aaaagcaagt tcgcaaaggg cttctttatc
     2281 ttcgtaacgc ttggctatag gcttacaaaa aagatgagga ttcattttac ctccgataac
     2341 atcatctaaa gtgatgatta aatgatgtaa agtgattgtc gcgtataaat tttcataatc
     2401 ttttaaaagt tcacataaag ttttagtggt aatatgctcc ataacaatct taagtcgtgg
     2461 aaaatgtttg gctaattttt cataaatttt agcaaaatta ctttccctgt ccattacaaa
     2521 atcattggtt tctccatgca ctaacaaagg aatatttaaa tcactcatag cctctaaagt
     2581 aggttttaaa tactctatat caaaacttga aactccacca tttgaatttg ttgtaattcc
     2641 tgctggataa agcttaatgc caaaaatttc atctttagca ctgtaaagaa atttctcatc
     2701 ataattttta aaaaaaagtg tcattaaagg agtgaaattt tcatctttac aagccttaag
     2761 gatacgcatt ttataagctt ttagatcttc taaattgcaa agtgtaggga ttaaatttgg
     2821 cataatcaca gctgcacaaa aatctcttgc actcaaaggt gcaataagtt ctaacatttg
     2881 attatctctt aaatgcaaat gcatatctaa aggattttta agtttcattt ttatctccta
     2941 tatttagctg ataaaatcca tttttaagac gcttaaaaag ttttttttct tctaaaaact
     3001 taaaagtagc gatgatggta ggtttacttt gatgtaattt ttcttcaaga tcactgattt
     3061 taatcataat aaaaccattt tcatcggcat tttcacataa aaattttaac aattcaaaac
     3121 gcttttttcc taaaatttct cgtattaaat tttcaaattt cataagcaaa tattatataa
     3181 aataaagccc caaacaaaaa gagctaaaag cacactaaaa aacactgccg cactcgcaca
     3241 atctttagcg atttttgctt tttcatgcca ttcatttgta atcaaatcaa cacaagcttc
     3301 aattgccgaa tttaaagctt ctacaattaa gataagtatt aagacactta tcaataacaa
     3361 atgctccaaa aaactaactt ttaaaaaaaa actaaaaact atcgcgggga taataatgca
     3421 aagttcaatt ctaaacgcca tttcattttt gaataaagca aaaagccctt ctaaagcata
     3481 tcttgcgtta tttaaaaaat gatatttagg cttcatggat ttgccttaag tttaggattt
     3541 aataaatcat attctggttc ataaacactt gtttttacat caaaatatcc taaaagagtg
     3601 ctaaaaagat tatcttgaga aagttttaaa cctttatgct ctttagctaa attcattaaa
     3661 ttttcatcat tgctccaaaa aatagcagga atatgagttt gataacttgg tgctatagca
     3721 taaggcatac catgaagata aatatcattt tcacccaaac tttcaccatg atctgaaaga
     3781 taaaacaaag aactttcata gcttttttgc tcttttaata gttttataat ctcacttaaa
     3841 agataatctg tataaagtaa agtattgtca taagtgttga ttaaagcctt gttatcacat
     3901 tttgaaagct cattagtatc acaagttgga gtgaattttt taaattcact tggatagcgt
     3961 ttataataag ttggcccatg agaaccttgc aaatgaagaa ctattatatt ttgatcactt
     4021 aaatgattta atttttcttt aaaaggagcg agtaaatttt catccaaatc actagaaagc
     4081 ttttgcttat aagctaatct atcacaaacc cctttacaac caccagaatt attatcaaac
     4141 catgcagtat ctacacctgt tttataaagc acatccatcg cattttcttg aaattctgaa
     4201 cttgaataat tttcacgctt agaaatagaa aacatacaag gtaaacttac cgctgttgct
     4261 gttccacatg atgaaaaatt atcaaaaaag actacattat cttttttggt ataaaaattg
     4321 gtatcatttt tagtatatcc acccaaagag taatttgccg ctctagcggt ttcacccacc
     4381 accaaaacca aaagtttttt agtgtgattg ttttctctat aagcatcatt agctatagtt
     4441 ttaaattctg gcttagcttt tacaaaacga atataatagc gatatacggc ataaatttga
     4501 taaaaaggag tattatacat tcttatttca ttatagtttc taaaaaaagg caagaaagtt
     4561 ttacttaaag ggattaaaac cgcacaaaca acaatcaaac ctgatattat attgataatt
     4621 ttaattttta gatgggattt aaaactatca taataatcaa tttttacttt aacaacataa
     4681 aaaaccaata ataaagccaa aacaataaat aagatcaatt ttaaatttaa caaatctttt
     4741 acttctttaa tgtctgtttg aacaacattt tgtatcatat cagaatctat aagcacccca
     4801 taaaaactaa taaagtaaac acttaaaaaa gatgatatta taaataatat agaaaaaaat
     4861 ttagtaaaaa actttataaa aagcaaagag caaatcacgt gaacaagtgc aaaataggcc
     4921 acaataaaaa caaaagttat aaaccagttt tgtgtatttt tttcatacac aaaataaaat
     4981 aaattaaaat tcaacaatac aatcatcaaa gaattaaaaa aagtaaactg aagccaagtt
     5041 aatctaagca tataaatccc acctccaaat ttaagctttt aattttattg aattttttta
     5101 aatggattgt agtttgaaat ctttttatgt tatgatttac acttttaatg aaaattttaa
     5161 ggaaaataat gaaactactt tcatggaatg tcaatggctt aagagctatt tgtgataaaa
     5221 atgcacttga ttggatagca caagaacaaa ttgattttat aggttttcaa gaaatcaaag
     5281 cacatgaaga taaatttcct aaaaaaattt atgaatatcc ttttaaacac atgtatttta
     5341 attctgctaa aagagcgggg tattctgggg taatgagtct ttgtaatttt gatagcgaag
     5401 taaaaaaatg cgaatttttt gatgatgaag aaggtagggt tttagaacac cgttttaaaa
     5461 atatcgcact ttttaatatc tattttccaa atggtcaaaa agatgaagag cgtttaaatt
     5521 ttaagatgaa attttatgca gattttttag tatatttgga taaactttta aaggatgggt
     5581 ttgaaattat catttgcggt gatgtcaata ccgctcataa agaaatcgat cttacccacc
     5641 caaaagccaa tgccaatact tcaggttttt tacctataga aagagcttgg attgatgatt
     5701 tgctaaaact tggttttata gatactttta gagaaattaa tggcgaaatc aaagaaaaat
     5761 actcgtggtg gagctataga atgaaagcaa gagaaagaaa tgtaggctgg aggattgatt
     5821 attttttcat ttcaaagggt ttaaaagata aacttaaaaa cgctttcata agagatgata
     5881 tttttggctc tgatcacgca cctgtaggta tagaaataga tatttaatat cccaaaaatg
     5941 ggatattatt ttttaacaaa tttttttgct ttttcccaaa gtcttacacc gagcttttta
     6001 gcttttttag aatttaaatc tttgtatttt tcactagcaa ttttttctaa ttcaaaaatt
     6061 tcttgtttaa aacgatttaa ttttctttga gtaagtttat taaaatcatt aatctttgga
     6121 tttttcttaa tatcatttaa aactaatatt agttgctctc tgctttcacc tgcaagacgt
     6181 ctaaatttag caaaaagatt atcaagttca tgttctagta aattctcaac tatactctta
     6241 caaggatcat tttgtagttg aatctctttt tttaaaagag caataaaatc atcttctata
     6301 cctattagtt ctttgctttt taaactaaca tcttcttcaa aatttgcata agttaatgaa
     6361 gctttaaatt tttccattgc caaaacaata ccatctcttg tgcctttaat cacacctaag
     6421 caaagatctt ttgcataagc catagattca ttggctattt caaaagcagt atttaaaata
     6481 atacttgaaa tttttaaaat tctttctttt tcaaaatgag cttcacaaat ggcattatat
     6541 acgagatttt tagctatttc actacttgta agttctatat cttcagcctt ttctaatgta
     6601 gttaaaaaag cactttcagc ggtttctttt aaaattccaa gcattt
//
LOCUS       DAEBKH010000087         6578 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.087, whole genome shotgun sequence.
ACCESSION   DAEBKH010000087 DAEBKH010000000
VERSION     DAEBKH010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6578
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.087"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            40..465
                     /gene="exbB"
                     /locus_tag="KIL20_001201"
     CDS             40..465
                     /gene="exbB"
                     /locus_tag="KIL20_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HBD2721224.1"
                     /translation="MEFLKDYIDLIIFLILGIMAFIAFWCVVERMLFFRKINFKNYEN
                     QEQFDDAISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIVVGLSL
                     ALKATALGLLVAIPALMAYNALLRKVSLLSNAYKANKNA"
     gene            458..847
                     /gene="exbD"
                     /locus_tag="KIL20_001202"
     CDS             458..847
                     /gene="exbD"
                     /locus_tag="KIL20_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HBD2721225.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            844..1527
                     /locus_tag="KIL20_001203"
     CDS             844..1527
                     /locus_tag="KIL20_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HBD2721226.1"
                     /translation="MKTLFLNHKYQASYITFIVFIPLLFVIFHSNDFFKMEIKNEDSF
                     SLAIKQFTQTNPTNETKPTESIIEPIKPKPQPKVIKKTPEKIQKKIKKTPPHPIPNKT
                     PIAPTQEVKTFTKTTDTNVKPKITQLTQGKDNHPVLKEIQKAIQQAQFYPRQAKKMRM
                     QGTVKVEFLWKENKTLADLKIIESSGYDLLDKSALESIRKASLNFPQYNGDLRITLPI
                     IYDFKTLRG"
     gene            complement(1540..2409)
                     /locus_tag="KIL20_001204"
     CDS             complement(1540..2409)
                     /locus_tag="KIL20_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721227.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKIVFENKQGELIALNLSDENYSSLQKNFGSYTNYVARNDGSIRLNGEANQFVSNWF
                     ESVKDNFGSLNSNLNNKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIKEASGGGANAMKTIDPQKINKKDDKENNI
                     KEKEDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIVDKRV"
     gene            complement(2413..2574)
                     /locus_tag="KIL20_001205"
     CDS             complement(2413..2574)
                     /locus_tag="KIL20_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721228.1"
                     /translation="MLKIILVLSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            2669..3652
                     /locus_tag="KIL20_001206"
     CDS             2669..3652
                     /locus_tag="KIL20_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HBD2721229.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMIGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGISGRSRKRQLELAAKFGLEDFESPGGGCLLTLDNFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEVIELGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEAGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(3738..4826)
                     /gene="aroC"
                     /locus_tag="KIL20_001207"
     CDS             complement(3738..4826)
                     /gene="aroC"
                     /locus_tag="KIL20_001207"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HBD2721230.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGIPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFGICVQSGVFGVGTFV
                     SNLKEKEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFSKQESIDKFGNNLEFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(4826..5500)
                     /locus_tag="KIL20_001208"
     CDS             complement(4826..5500)
                     /locus_tag="KIL20_001208"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HBD2721231.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(5487..5927)
                     /gene="rnhA"
                     /locus_tag="KIL20_001209"
     CDS             complement(5487..5927)
                     /gene="rnhA"
                     /locus_tag="KIL20_001209"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HBD2721232.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5914..>6578)
                     /locus_tag="KIL20_001210"
     CDS             complement(5914..>6578)
                     /locus_tag="KIL20_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721233.1"
                     /translation="LSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKL
                     RSYKENLELLECLFELNEDVQKEHDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLG
                     RLVFEKYHMFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFK
                     NSNFKMLKILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNE
                     TH"
BASE COUNT         2320 a         1169 c          825 g         2264 t
ORIGIN      
        1 aattttttaa aatttataag tatatttttg gagaaaaatg tggaatttct aaaagattac
       61 atcgatttaa ttatcttttt aattctagga attatggcat ttatagcttt ttggtgtgtc
      121 gtagaaagaa tgctattttt tagaaaaatt aactttaaaa attatgagaa tcaagagcaa
      181 tttgatgatg cgattagtga aaatttaacc actatatata tcatctattc caatgctcct
      241 tatataggac ttttaggcac tgtaataggc atcatggtta cattttacga aatgggcttg
      301 gcgggtaata tagatgtcaa atctatagtc gtgggacttt ctttagctct taaagctaca
      361 gccttaggac ttttggttgc tattcctgct ttaatggctt ataatgcctt acttagaaaa
      421 gtttccctct taagcaatgc ttataaggca aataaaaatg cttaaactac caaaaaatga
      481 aggtttaaat atagttccat ttatagacat tatgcttgtt ttgcttgcta tagtgcttag
      541 tatttcaacc tttattgcgc atggaaaaat tcaaatctca cttccttcaa gtgaaaatgc
      601 taccaatata agcaataatg aaaaaaaact tcttataacc atagacgaaa aaaatacttt
      661 ttatttaaat gataaattag ctgatttaaa tgaagttcaa aatgctattt tttcacttga
      721 taaaaaaacc atagtagaac taaaaagcga taaaaatgct aaatttgaaa gctttgtaaa
      781 aattatagat tttttaaaag ccaaagaaca tgaaaatttt cagattctta ctgagaaaaa
      841 caaatgaaaa ctttattttt aaatcataaa taccaagctt cttatataac ttttatagtc
      901 tttatacctt tactttttgt catttttcac tcaaatgact tttttaaaat ggaaattaaa
      961 aatgaagatt ctttttcttt agcaataaaa caatttaccc aaactaatcc aacaaatgag
     1021 actaaaccaa cagaatccat tatagaaccc atcaaaccaa aacctcagcc aaaagttatt
     1081 aaaaaaactc ctgaaaaaat tcaaaaaaag ataaaaaaaa cacctccaca cccaatacca
     1141 aataaaaccc caatagcacc aactcaagaa gttaaaactt ttacaaaaac aactgataca
     1201 aatgtcaaac ctaaaatcac ccaattaaca caaggaaaag ataatcaccc tgtattaaaa
     1261 gaaattcaaa aagctataca acaagcacaa ttttatccaa ggcaagcaaa aaaaatgcgt
     1321 atgcaaggaa ctgtaaaagt agaattttta tggaaagaaa acaaaacttt agcagattta
     1381 aaaatcatcg aaagctcagg atatgatttg ttagataaaa gtgctttaga aagcataaga
     1441 aaagcttctt taaattttcc acagtataac ggagatttaa gaattacact acctattata
     1501 tatgatttta aaaccctaag agggtaaaat tataatttgc tacactctct tatctacaat
     1561 ttgcgcttct tgattttcaa ttttattttg aaaatcttta cttaaattct gacttaattc
     1621 ttgcaaagat ttttgcttca gtttttcaaa ttcttcagga ttgctagcct caagctttgc
     1681 ctgctcatca gcacttaaag cacttaaacc tttttcttga gctttttgaa gcaaatcttc
     1741 gtcttctttt tctttgatat tattttcctt atcatctttt ttattgattt tttgcggatc
     1801 tatagttttc atagcattag ctccaccacc tgatgcttct ttaatgtcgc ttaaaatttc
     1861 tctcatgcta ggttctttaa catcactatc atcaacttta ccatctttat ttacatcttt
     1921 atcaataaaa aaatttaatt tttcttctat atttgcatca tcagatattt tttcatcgct
     1981 tgttttaaag cctaaatttt gcatactttg ctgaagagta cttgtattaa aatttaattt
     2041 tacactttgt tgtttattat ttaaatttga atttaaagaa ccaaaattat cttttacact
     2101 ttcaaaccaa tttgaaacaa attggtttgc ttcgccatta agccttatac taccatcatt
     2161 tctagcaaca taattcgtat aagaaccgaa atttttttgt aaactactat aattttcatc
     2221 gcttaaattt aaagctataa gttcaccttg cttattttca aaaacaatct taacaccatc
     2281 gctatttaaa ctcgaaagat cttgcacggg aattttatct tgatcttctt tttttaatac
     2341 gctaagctct tttttatcaa cattattagt taaagaatga gttaaactag cagaagtatc
     2401 gattttcatt atttatcctt ttttacattt tgcaaataaa cctaaacgac acatttttct
     2461 ctcatgtgaa ttttttaaag aattacactt tttaagttct tgctcgtagt tagcacaaga
     2521 atttgcaaaa gcaaaagaac tcaaaatgct taaaaccaaa attattttta acactttcca
     2581 atccttattt taaagatttt ttagttaaaa ttataccttt tataatcgac aaaatcttaa
     2641 aaaactttat aatctcagaa aggaatcaat gaaagcatta gctcttttta gcggtgggct
     2701 tgatagtatg cttgcaatga aactcatcac tgcacaaggc atagaagtta aagctctaaa
     2761 tatcaacata ggttttggaa gcacaagtga taaaagcgaa atcatgaaaa agcgtgcggc
     2821 aatgataggt gcagattttg aaatgataga tgtaagaaat tcctatcttc aagaagtgct
     2881 ttttaatcca caatatggct atggcaaaca ttttaatcct tgtatagatt gtcatgcttt
     2941 tatgtttaaa actgctttgg ctatgttaaa agaagaaaac gcaagtttta tcatcacagg
     3001 agaagtttta ggacaacgcc ctatgagtca aagaagtgat gcgatggcaa aggttaaaaa
     3061 acttgctctt gatgaagaag atttaatctt gcgtcctatg tgtgcaaaaa acctacctct
     3121 aaccaaacct gaaagagaag gttgggtaga tagagaaaaa ctcgaaggta ttagtggaag
     3181 aagtcgtaaa agacaacttg aacttgcagc taaatttggc ttagaagact ttgaaagccc
     3241 aggtggaggt tgtttgctaa ctcttgataa ttttgctaaa aaaattcgag atttcataga
     3301 atttgacaaa gatatgcagg ttaatgacgc acaactttta aaatatggtc gtcatttaag
     3361 attacctaat ggagctaaaa tgatcatagg tagaaatgaa cttgaaaata ctcttttaaa
     3421 aggtttaaaa actcctaaat atgaagtcat agaacttggg gatttaatcg gagcttactc
     3481 tttggtagat gaaaaaattt cagaaaaaga cttagaactt gccttaaaaa tagcccttac
     3541 ctatactaaa cacgaagcag gaaaaagcta tgaacttaaa tttaaaaatc aagcttatac
     3601 aagcatagct tttgaaaata aggctgatat taatcaattt tttattagtt aaagtataaa
     3661 gtatttagca aaacaagcga tatagtattt gaatcttttc aaaatattgc aatcaagccc
     3721 atgaaaatgg gcttttttta ttttaatcca taagcatttt ttaaattgtt taaattcgca
     3781 ctcgcattca aaagcaaaca atcagccaaa actaaacgca ccatagcact agctacaaca
     3841 cttcctctaa cacctacaca aggatcatgc ctacctttga gttcaaattc caaattattg
     3901 ccaaatttat ctatactttc ttgcttggaa aaaatagaag gagtaggttt aaaataagtt
     3961 tttaaaataa gattttctcc atttgaaatt cctcctaaaa ttcctccgct atgattgctt
     4021 aaaaacttgc catcttttaa agcatcatta ttacacgatc cgcgcatttt gcttgcatta
     4081 ataccttcgc ctatttcaac tgctttaaca gcattaattc ccattaaagc atgagctaat
     4141 ttagagtcta acttatcata aagaacttct ccaagtccta taagcatacc actaactttt
     4201 gtaaaaacag cagcgcctac gctatctttt gagtttctag catttaaaat ttcattttta
     4261 aagtcacttt ctagttttgg atcaaggcaa aaaatttcac ttttcttagc aaattcaaaa
     4321 tcaaattctt tttctttcaa atttgataca aaagttccta ccccaaaaac accactttga
     4381 acacaaatgc caaattcacg caaaagcatc gctgcaactg caccaccagc cactctagca
     4441 acactttccc tagcacttga tctaccccca cccctatgat ctcttatgcc atatttataa
     4501 aaataagtaa aatccgcatg agcaggacga aatagatctt ttaaattatc ataatcctta
     4561 gaatgggcat tttcattaaa aaccactata gctatgggat gacccgttgt atatccttca
     4621 aaaaccccgc ttaaaacctg agctttatcg ctttcttttc ttggtgttgc aaatttactt
     4681 ccgcctttgc gtttatcaag ctcattttgc aaaaattctt catcaaattt aaccccagca
     4741 ggtattccat caataataca tccaacagcc acaccatgag actcaccaaa acttgtaaat
     4801 ttcaatctcg taccaaaggt attcactata aagctcctaa tttctcaagt gcaatttttg
     4861 ctgccatttg ctgtgcttct tttttgcttc ctgcaatagc tcttgcaagt tctttaccat
     4921 caagcattaa agcaatttca aattgcttta aatgatcagg gccaaaagca cgcactgttt
     4981 catactgcgg agtttgtccg atttttccct gtgtaatctc ttgtaatttt gttttataat
     5041 cttttataag aatttttgca tcaatttgag ggaaattttt ttctataagc cttaaagcaa
     5101 tagtttttgc aaactcgaac ccagcttcta aatgtatagc acctataatg gcttctaacg
     5161 catctgaaag tatagaaggc ttttcttttc ctccattgtt ttcctcagca acactcataa
     5221 gaataaaatc gcccaaattt aaactatttg caatttttgc aaaagacttt tcattcacta
     5281 aagctgctct aagcttagat aaatctcctt cggcatcttt ggcgaattta tgaaaaaggt
     5341 attcacctac aactaaatca agcacggcat cacctaaaaa ttccaagcgt tcgttgttgt
     5401 aagatttttt aaaactttta tgggttaaag catgtataag aagattttta tctttaaatt
     5461 cataagttaa actctgctct agcttttcaa tgtttttcat cattttccct tgcaattttc
     5521 aaagcagctt cacgcgccaa tgtatcacac ctttcatttt ccaaatgtcc attatgtgct
     5581 tttacccaaa aagccttaat cttatgagat tttgccactt taatatattc cttccataaa
     5641 tctatatttt ttttaccttt aaaatccttt tttatccatc cttctagcca ttcattaata
     5701 ctttgaacca ttaggttaga atctgtaaaa agcgaaattt cacaaggctc ttttaaagcc
     5761 ttcaaagatt caataattgc cattagctcc attctattgt tagtggtatt agcctcagct
     5821 ccaaaacctt ccttttgata ctccttataa cgcaaaatat aagcccatcc gccaaaacct
     5881 ggattgttaa gacatgagcc atctgtataa atttcaatgt gtttcattgt ttttcacttc
     5941 ataaataatt ttacaagtat taaactcata acaaacagga cagtgataaa aaaacaaagg
     6001 cattacattt ttacactcag aacaacggta tgaaaattct aaccccgcat taaaagaatt
     6061 atcttttaaa atttttaaca ttttaaaatt agaattttta aaaacaaact gatgcgtatc
     6121 atcatgcttt gaaattttac ccaaagcata aaagaattct aaaaaatctt gattttctaa
     6181 attaaacgct tcattttccc tataaagcaa atcacaaata tcaaaaaaat tttgccctaa
     6241 aaacatatga tatttttcaa aaactaaacg ccccaacata ggattatctt ctattttaaa
     6301 ttctaaaagt tttttctttt tttcttcatc agtgatatta aaagtacaaa gttctaaagc
     6361 tttgataaaa tcatgctctt tttgcacatc ttcattaagc tcaaaaagac attctaaaag
     6421 ttctaaattt tctttataag aacgaagttt taaataaaca atttttaaaa gttttaaagc
     6481 ttgtatattt cttggacgca gttttaaagc ttgtaataaa acttcttttg cacgctctaa
     6541 aaatcctgct ttaaaataaa cttttgccaa agaaagga
//
LOCUS       DAEBKH010000088         6381 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.088, whole genome shotgun sequence.
ACCESSION   DAEBKH010000088 DAEBKH010000000
VERSION     DAEBKH010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6381
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.088"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..415)
                     /locus_tag="KIL20_001211"
     CDS             complement(<1..415)
                     /locus_tag="KIL20_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HBD2721234.1"
                     /translation="MTFTPTQKELFNKNIEALSNILLKESLKEIKSSKFELILGKDNL
                     DINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFK
                     ALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQS"
     gene            complement(415..1185)
                     /gene="ptmA"
                     /locus_tag="KIL20_001212"
     CDS             complement(415..1185)
                     /gene="ptmA"
                     /locus_tag="KIL20_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HBD2721235.1"
                     /translation="MLENKIIFVAGACGRIGKALCQKILLSKGIPILADINKERLNKL
                     QENLETNFKTKLLSLELDITKQESLQTALQKSQERYGKIDAFVNSSYPFGKDWGRTPY
                     YELKYEQICESLNLHLAGFMLAAQEFVKFFKQQGYGNIINLSSIMGVYAPKFENYEGT
                     SMQSSLEYSVIKAGINHMSSWLAKELFNQNIRVNTLASGGILDNQNELFLKAYRKCCA
                     SKGMLDADDVCGTLVFLLSDESRFITGQTLVVDDGWGL"
     gene            complement(1185..1892)
                     /gene="legF"
                     /locus_tag="KIL20_001213"
                     /gene_synonym="ptmB"
     CDS             complement(1185..1892)
                     /gene="legF"
                     /locus_tag="KIL20_001213"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HBD2721236.1"
                     /translation="MAEILCTICARGGSKGVKNKNIRKINELEMIAYSIIQAQNSKLF
                     KHIVISTDSDEIASVAQKYDAEVFFKREAHLANDRAAKLPVMRDALLRSEEHFKTCFE
                     TLIDLDASAPLRSSLDIKKAYESFVENDNSNLITAVPARRNPYFNLVEIQNNKVVKSK
                     EGNFTTRQSAPKCYDMNASIYIFKRDYLLENDSVFGKNTGLFVMDESTAFDIDSELDF
                     KIVEFLISLKNLSPKDF"
     gene            complement(1885..2790)
                     /gene="ptmF"
                     /locus_tag="KIL20_001214"
     CDS             complement(1885..2790)
                     /gene="ptmF"
                     /locus_tag="KIL20_001214"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HBD2721237.1"
                     /translation="MKVLIIGFGSIGKKHFLALKNLKYEVSLLSLSAKKEEFKNTPIY
                     RSLKECDLNEFDLFIIANITTEHFNTLKALDELVKDKIILVEKPLFEKSQNFTSSKNH
                     IYVAYLLRFNPVIVALKRLLKGEKIYFASLVCNSYLPHWRAIDYRQNYSAKKELGGGV
                     LLDLSHEIDLAFFLFKDLELIYSQNAKISELDITSDDFAFLALKNSQEAKIHIELDYF
                     SKFNKREIIIHTLEKSFKADLINNKIEIYHKDQSQKILNFENDTIKTLQNLHQAVFEQ
                     NKELCDLKQALKVLEICDKVRKKNG"
     gene            complement(2787..3812)
                     /locus_tag="KIL20_001215"
     CDS             complement(2787..3812)
                     /locus_tag="KIL20_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HBD2721238.1"
                     /translation="MDIDKLKLTPDSSIKDALKIVGQERVRLGIIVDKKDKFLGVISD
                     SNIRKALINGKTLKDSIKGIYTKNPITIKENTSKEQLLKLSSKTDIYDFPVLDEKGQI
                     LSIKSISSLLKANPNSIIIMAGGLGSRLKELTKDTPKPMLKVGKKPILESIVQRLKNQ
                     NFENFIFCVNYKKQIIEDYFQKGQKFGVKISYIKERKKLGTAGALSLIKQEFKESFIV
                     MNADILTELDFNDLLKAHKKSKALMSVCVREFEQQIPYGVITQKQGFIENIEEKPTQK
                     FLVSAGIYVLENEILNLIAKNEYLDMPELIKLVLQKGKVNTYIINDYWIDIGKPDEFL
                     KANEDFK"
     gene            complement(3821..4975)
                     /gene="legG"
                     /locus_tag="KIL20_001216"
     CDS             complement(3821..4975)
                     /gene="legG"
                     /locus_tag="KIL20_001216"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HBD2721239.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCHEIQNDKDLNLQIIATGAHLS
                     PEFGLTYKEIEKEFKITKKIPILLANDDKISLCKSMSLAFSAFSDAFEDLNPDTVVIL
                     GDRYEMLSIASVCLLMHIPLVHLCGGELTLGAIDDSIRHSISKMSHLHFVSHEIYKKR
                     LLQLGEEEKRVFNIGSLASTIIKNMNFLNKKDLEKALEMKLDKELYLITYHPLTLNVK
                     NTQKEIKTLLKKLDTLKNASLIFTKANADENGLLINEILQNYCQKNSHKAKLFDNLGS
                     QKYLSLMKIAKAMIGNSSSGISESPFFKTPCINIGNRQKGRLRTQNIIDCEINDLDQA
                     FEKLESKEFKQNLKNFKNPYDNDKNPNKFIKTCLKNVNLDTILHKNFIDL"
     gene            complement(4968..5972)
                     /gene="legI"
                     /locus_tag="KIL20_001217"
     CDS             complement(4968..5972)
                     /gene="legI"
                     /locus_tag="KIL20_001217"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HBD2721240.1"
                     /translation="MKKTLIIAEAGVNHNGDLNLAKKLIEIAADSGADFVKFQSFKAK
                     NCISTKAKKAPYQLKTTASDESQLQMVQKLELDLKAHKELILHAKKCNIAFLSTPFDL
                     ESVDLLNELGLKIFKIPSGEITNLPYLKKIAKLNKKIILSTGMANLGEIEEALNVLCK
                     NGAKRQNITLLHCTTEYPAPFDEVNLKAMQSLKDAFKLDVGYSDHTQGIHISLAAVAL
                     GACVIEKHFTLDKNMSGPDHKASLEPHELKTLCIQIRQIQKAMGDGIKKASKSERKNI
                     NIVRKSLVAKKDIQKGEIFNEENLTTKRPANGISAMRYEEFLGKIATKNYKEDELIRE
                     "
     gene            complement(6019..>6381)
                     /locus_tag="KIL20_001218"
     CDS             complement(6019..>6381)
                     /locus_tag="KIL20_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721241.1"
                     /translation="KLFDFNESKILKASLNNEILAYVSFFLCGDFSYYHLSANVLKSN
                     ANAALLDFFFEYASNNNSKFCFLGGGIQDNDTLYKFKEKFSTINGSFYIGGIVFNQKE
                     YNQICKNFSNNKFLKYRY"
BASE COUNT         1944 a         1019 c          944 g         2474 t
ORIGIN      
        1 cactttgtaa ttcacttgaa aaatctaaga tatgaaacat tatccaaatg atttctatat
       61 ctttttcaaa aacaacaata tgttgatgat ttttattttg caataaagct ttaaataaaa
      121 ttccatttcc aaaaccataa aaatataata caggataaag tagatattta tcattataag
      181 tatttagcat agtttgcaat tctttaatgg gatcttgata aagtaaattt tcattatacc
      241 cccccccatt attttttata cttgtatctt ttaaattgat atctagatta tctttaccta
      301 agataagttc aaatttactt gatttaattt cttttaaact ttcttttaaa agaatattgc
      361 ttaaagcctc aatgtttttg ttaaaaagtt ctttttgagt aggggtgaag gtcatcataa
      421 gccccatcca tcatctacca ctaaggtttg ccctgtgata aatctactct catcgctaag
      481 caaaaatacc aaggttccgc acacatcatc agcatctaac atacccttgc ttgcacaaca
      541 ttttctataa gcttttaaaa aaagttcatt ttgattatcc aaaattcctc cacttgctag
      601 ggtattaacg cgtatgtttt gattaaaaag ctctttagct agccaagagc tcatgtgatt
      661 aatccctgct tttatcacac tgtattctaa agagctttgc atggaagtgc cttcatagtt
      721 ttcaaatttt ggcgcataaa ctcccatgat ggagctaaga ttgatgatat taccatagcc
      781 ttgttgttta aaaaatttca caaattcttg agcggctagc ataaagcctg ctaaatgtaa
      841 atttaaactt tcacaaattt gttcgtattt gagttcataa taaggtgttc taccccaatc
      901 tttgccaaaa ggatagcttg agttaacaaa agcatcgatt ttgccgtatc tttcttgact
      961 tttttgaagg gcggtttgta agctttcttg tttagtgata tcaagttcta agcttaaaag
     1021 ttttgtttta aaatttgttt ctaaattttc ttgcaattta tttaagcgtt ctttgttgat
     1081 atctgcgagt atagggatac ctttgctaag aagtattttt tgacaaagcg ctttacctat
     1141 acgcccacaa gctcctgcta caaagatgat tttattttca agcattaaaa atcctttggt
     1201 gataaatttt ttaaagagat taaaaactct acgattttaa aatcaagctc gctatcaata
     1261 tcaaaagctg tgctttcatc cattacaaaa agccctgtgt ttttgccaaa aacactatca
     1321 ttttctaaaa gataatccct tttaaagata taaatactag cgttcatatc atagcatttt
     1381 ggggcacttt ggcgagtggt aaaatttcct tctttggatt ttactacctt gttattttgt
     1441 atttctacaa ggttaaaata aggattgcgt ctagcaggaa ctgcggtgat gagattggaa
     1501 ttatcatttt caacaaaact ttcataagct ttttttatat caaggcttga gcgaagcggg
     1561 gctgaagcat ctaagtctat gagagtttca aaacacgttt taaaatgctc ttcacttctt
     1621 agcaaggcat cacgcatgac aggaagtttt gcagcccgat cattggcaag atgggcttct
     1681 cttttaaaaa aaacttcagc atcgtatttt tgggctacac ttgcgatttc atcgctatcg
     1741 gtgcttatga ctatgtgttt aaaaagcttt gaattttgag cttgtatgat gctataagct
     1801 atcatttcaa gttcgttaat ctttctaata ttcttgtttt taacgccctt gctcccaccc
     1861 ctagcacaaa tggtgcataa aatttcagcc attttttttc cttactttat cacaaatttc
     1921 aagtactttt aaagcttgct taagatcgca aagttctttg ttttgttcaa agactgcttg
     1981 atgtaaattt tgaagggttt ttatcgtatc gttttcaaaa tttaagattt tttgactttg
     2041 atctttgtga taaatttcga ttttattgtt tatcaaatcg gctttaaagc ttttttctaa
     2101 agtatggatg ataatttctc ttttgttaaa tttagaaaaa tagtctagtt ctatatgaat
     2161 tttagcttct tgtgaatttt ttaaagccaa aaaggcaaaa tcatcgcttg ttatgtcaag
     2221 ctctgaaatt ttagcatttt gggagtatat aagctctaag tctttaaaaa gaaaaaaggc
     2281 tagatcgatt tcatgagaaa gatcgagcaa aaccccacca cctagctctt ttttagcgct
     2341 atagttttgc ctgtaatcta tggctctcca atgaggcaaa taagaattac aaaccaaact
     2401 agcaaaataa attttttcac cttttaaaag cctttttaaa gccacaatca caggattaaa
     2461 acgcagtaaa tatgctacat aaatgtgatt ttttgagctt gtgaaatttt ggcttttttc
     2521 aaataaaggt ttttctacga gtatgatttt atcttttaca agctcatcta aagcttttaa
     2581 ggtattaaaa tgctccgtag tgatatttgc gatgataaaa agatcaaatt cgtttaaatc
     2641 acattctttc aaagagcgat aaattggagt atttttaaat tcttcttttt tagcacttaa
     2701 agaaagcaaa cttacttcat actttaaatt ttttaaggct aaaaaatgct tttttcctat
     2761 acttccaaag cctatgatta agactttcat ttaaaatcct cattggcttt taaaaactca
     2821 tctggctttc caatgtcaat ccaataatcg ttgatgatat aagtatttac tttgcctttt
     2881 tgcaatacaa gtttgatgag ttctggcatg tctaagtatt catttttagc aattaaattt
     2941 aaaatttcat tttcaagtac ataaatcccc gcacttacta ggaatttttg ggtaggtttt
     3001 tcttctatat tttctataaa accttgtttt tgggtgatta ctccataagg aatttgttgc
     3061 tcaaactcac gcacgcaaac gctcattaaa gcttttgatt ttttatgcgc ttttaaaaga
     3121 tcattaaaat caagctcggt taaaatgtct gcattcataa cgataaaact ttctttaaat
     3181 tcttgtttta taaggcttaa agcccctgct gtacctagtt ttttacgctc tttaatataa
     3241 gaaattttaa ccccaaattt ttgccctttt tgaaaataat cttctatgat ttgtttttta
     3301 taattcacac aaaagataaa attttcaaaa ttttgatttt taagtctttg gactatgctt
     3361 tctaaaatgg gttttttgcc tacttttaac ataggttttg gagtatcttt agtcagctct
     3421 tttaagcgag agcctaagcc tccagccatg atgataatgg agtttggatt agcttttaaa
     3481 agtgatgaga tagattttat agaaagaatt tgcccttttt catctaaaac aggaaagtca
     3541 taaatatcgg ttttagatga aagttttaaa agctgttctt tgcttgtgtt ttcttttatg
     3601 gtgatgggat ttttagtgta aatacccttg atactatctt ttaaagtttt accattaatt
     3661 aaagcttttc tgatgtttga atcgctaatg actcctaaaa atttatcctt tttatcaact
     3721 ataatgccta gtctaacgcg ttcttgcccg actattttta aagcgtcttt tatgctagaa
     3781 tcaggggtga gtttgagttt gtctatatcc acactaagcc ttataaatcg atgaaatttt
     3841 tatgtaaaat tgtatctaaa tttacatttt ttaggcaagt ttttatgaat ttattgggat
     3901 ttttatcatt atcataagga tttttaaaat tttttaaatt ttgtttaaat tctttgcttt
     3961 ctaatttttc aaaagcttga tcaagatcat taatttcaca atcaatgata ttttgagttc
     4021 ttaaacgccc tttttgtcta ttgcctatat taatgcaagg agttttaaaa aaaggacttt
     4081 cactaatacc acttgaagaa ttgcctatca tggccttggc tattttcata agacttaggt
     4141 atttttgtga accaagatta tcaaaaagtt tagccttgtg tgagtttttt tggcagtaat
     4201 tttgcaaaat ttcattgatt aaaagtccat tttcatcggc atttgctttg gtaaaaatca
     4261 aacttgcgtt tttaagggtg tcaagttttt taagtaaggt tttaatttct ttttgagtat
     4321 tttttacatt taaggttaaa ggatgataag tgattaagta aagttcttta tctagtttca
     4381 tttctaaggc tttttctaaa tcttttttgt ttaaaaaatt catatttttt atgatagtag
     4441 aagctaaaga tcctatatta aaaacccttt tttcttcttc tccaagttgc aaaagccttt
     4501 ttttataaat ttcatgactt acaaaatgta aatgtgacat ttttgaaatg ctgtgtctta
     4561 tactatcatc aatagctcct aaagtaagct ccccgccaca taaatgtact aaaggtatgt
     4621 gcatcaatag acatacactt gctatgctaa gcatttcata acgatcgcct aaaataacca
     4681 ccgtatcagg atttaagtct tcaaaagcat cgctaaaagc actaaaagct aaactcatac
     4741 ttttacaaag gcttatttta tcatcgtttg caagcaggat agggattttt ttagttattt
     4801 taaattcttt ttctatttct ttataagtga gtccaaactc agggcttaaa tgtgcccctg
     4861 tagcgatgat ttgaaggttt agatctttat cgttttgaat ttcatggcat aaatttctta
     4921 aaagatacca ttcagccctt gttgcactga ctatacaaat ttttctttta ctcacggata
     4981 agctcatctt ctttgtagtt tttagtagca atcttaccta aaaactcttc atatctcata
     5041 gcacttatac catttgctgg gcgtttggta gtaagatttt cttcgttaaa aatttctcct
     5101 ttttggatat cttttttagc gactaaactt tttcttacta tgttaatatt ttttctttcg
     5161 cttttgcttg ctttttttat gccatcaccc atagcctttt gtatttgtct tatttgaata
     5221 caaagcgttt ttagttcatg aggttctagg cttgctttat gatcaggccc tgacatattt
     5281 ttgtctagag taaaatgctt ttctatcaca caagctccca aggcaaccgc agctagggaa
     5341 atgtgtatgc cttgagtgtg atcagaataa cccacatcaa gcttaaaagc gtcttttaag
     5401 ctttgcatgg ctttaagatt gacttcatca aaaggggcag ggtattctgt agtgcagtgc
     5461 aaaagagtga tattttggcg tttagcgcca tttttgcaaa gcacatttaa agcttcttct
     5521 atctcgccta aatttgccat gcctgttgaa agtatgattt ttttattaag ctttgcaatt
     5581 tttttaagat agggtagatt ggtgatttct ccgcttggaa ttttaaagat ttttaagcct
     5641 aactcattta aaagatctac actttcaaga tcaaaaggag tagaaagaaa ggcaatattg
     5701 catttttttg cgtgtaggat aagctcttta tgagctttaa gatcgagttc gagtttttgt
     5761 accatttgaa gctgactctc atcactagct gtggttttaa gctgataggg tgctttttta
     5821 gcctttgtgc tgatacagtt tttggcttta aaactttgaa atttaacaaa atcagcccct
     5881 gaatctgctg cgatttctat taacttttta gctaaattta aatcaccatt gtgattaact
     5941 cctgcttctg cgatgatgag ggtttttttc atagttttcc ttaattggaa ttaatataaa
     6001 tattctagat attatttttt aatatcggta ttttaaaaat ttattattgc taaaattttt
     6061 acaaatttgg ttatattctt tctgattaaa aactatacca cctatataaa aacttccatt
     6121 tatagtagaa aatttttctt taaatttgta aagcgtatcg ttatcttgaa ttcctccacc
     6181 caagaaacaa aatttggaat tattgttact tgcatattca aaaaagaaat ccaataaagc
     6241 tgcattggca ttggatttta aaacattggc acttaaatga taataagaaa aatctccaca
     6301 aagaaaaaat gatacataag caagaatttc attatttaag cttgctttta gtattttact
     6361 ttcgttaaaa tcaaagagtt t
//
LOCUS       DAEBKH010000089         6307 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.089, whole genome shotgun sequence.
ACCESSION   DAEBKH010000089 DAEBKH010000000
VERSION     DAEBKH010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6307)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6307)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6307
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.089"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..1725
                     /locus_tag="KIL20_001219"
     CDS             <1..1725
                     /locus_tag="KIL20_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HBD2721242.1"
                     /translation="NGNLDFNLAELEAFKDYRNAFRQTSDYKKLKESKIYKESKDKQD
                     LEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIKSPSDIKEQKKFLGYEWSNRKGDEGL
                     KELHEPYLSPLFERGNPQNETKLNTLIYKSFLNTLDVIPQELQTYATKARLVDMIDFE
                     KVEFNKAISLNPKTQREEIKSQYPLVKLKICGDFFMGGTPSRKNINYWNGDIKWLTIS
                     DYSNHQVIMDTKEKITREGFKNSNAKMIQKGAVVVSIYATIGRVGILGEDMTTNQAIV
                     AIIPNEEFINKYLMYAIDYFKFQLYNEVITTSQQNINLGILQNMVIPKPPLEIQKQIV
                     AECEKIEEQYNTLSLSIKEYQNLIKAMLQKCGIIEDSQEYELNSILDKINNLCKINLD
                     SEFLSSFNKTIKEYALSNPIFKLSIGKRVLNNELLENGQIPVYSANVLEVFGFVNKEI
                     LQDYDNDSVLWGIDGDWMVGFIPKNKKFYPTDHCGVLRVDDTKINAKYISFILNEAGK
                     KQGFSRKLRASIDRIKALRVKLPSLEFQDQIADIIDKIEKKINEYKIELDRLEKEKEK
                     ILQKYLFS"
     gene            1768..2469
                     /locus_tag="KIL20_001220"
     CDS             1768..2469
                     /locus_tag="KIL20_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HBD2721243.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     IHLHGFLPELRCLKCEGIFNIGYEKFTDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLHQTSLFISIGTSGAVLPVGQYASMCEKSILNIYEKDVNLERYFDKIYIEDIISAID
                     KITLDIENFMKDGNV"
     gene            2462..3061
                     /locus_tag="KIL20_001221"
     CDS             2462..3061
                     /locus_tag="KIL20_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HBD2721244.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGSVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLDNVIFMRFLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGIILNGSNPYVIGFWLSATGIVLSNQHTYSTILGLVVAILFWIGALAF
                     VVAKYSYLFSAKVIRIINIVSALIIEYFALSLLYKTFIG"
     gene            3066..4163
                     /gene="dapE"
                     /locus_tag="KIL20_001222"
     CDS             3066..4163
                     /gene="dapE"
                     /locus_tag="KIL20_001222"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HBD2721245.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFNDEGEHLAFGGHVDVVPAGEGWKNDPFEPLEEEGFIYARGAQDMKSGVA
                     AFIDAVKDVSFKGRRLSLILTSDEEGEAKYGTKAVLEWMKEKNMLPDYAVVAEPTCVK
                     KMGDSIKIGRRGSINGKLLIRGKQGHVAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            4173..6236
                     /locus_tag="KIL20_001223"
     CDS             4173..6236
                     /locus_tag="KIL20_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HBD2721246.1"
                     /translation="MIEEILKDSDYKLDLFSKKAIAELETKIIAKTNKNNQIIYYTNC
                     LIRDKEIKLTPEEIVRQLYIDKLLNEYNYPKDMIKIEFGVHFGREVKRADIVIMDKIQ
                     ITVPYIIIEVKKPKLKDGKEQLKSYCNATGATMAVWCNGKEISYYHRKDPNYFESIPN
                     IPASNQTLPDLLKVKFTFDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECF
                     KLIFIKLFDELEGARDRTKSLEFRNYGESDSELKQKIEKLFDKAKKKWEGVFNNDEKI
                     KLSPSHLSVCVSSLQNVKLFNSNLEVIDDAFEYLVNKSSKGEKGQYFTPRYVIDMCVK
                     MLNPKKDESMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVK
                     EKVFGIDFDEKSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEG
                     FKRLKNLRVTKNQNRDFNFDVLMANPPFAGDIKESRILARYELGKKENGKPQSKVGRD
                     ILFIERNLDMLKPGGRMAIVLPQGRFNNSSDKYIREFIAQKARILAVVGLHGNVFKPH
                     TGTKTSVLFLQKWDDKLCPKCEDYNIFFATMNEPSKDNSGEKIYYPLLDSHDHLVVKH
                     DLFHPHLEGDEPIKQKDESQEEFDKRIQEYRLNVEKYKDLQKDGIAEAFIEFAKAENL
                     SFWKE"
BASE COUNT         2368 a          711 c         1216 g         2012 t
ORIGIN      
        1 aatggaaact tagattttaa tcttgcagag ttagaagcct ttaaagatta tcgcaatgca
       61 tttaggcaaa caagtgatta taaaaaactt aaagaatcta aaatttataa agaaagtaaa
      121 gataagcaag atttagaaga taaagccttt ttagcttatg ctcaggcaat agaaaaggat
      181 aaattgcttt attttagtct aagtcttaat caagaagttt taatcataaa atccccaagt
      241 gatataaaag aacaaaagaa atttttaggt tatgagtgga gtaatagaaa aggtgatgaa
      301 ggtttaaaag aattgcacga gccttatttg agcccacttt ttgaaagagg caatccacaa
      361 aatgagacta agcttaatac tttaatctac aaatcttttt taaatacgct tgatgttatc
      421 ccgcaagaat tacagactta tgctacaaaa gcaaggcttg ttgatatgat agattttgaa
      481 aaagtggaat ttaataaagc tataagttta aatccaaaaa ctcaaagaga agaaataaag
      541 tctcaatacc cattggttaa attgaaaatt tgtggagatt ttttcatggg aggaacacca
      601 tcaagaaaaa atataaatta ttggaatggg gatattaagt ggctaacaat tagcgattac
      661 tctaaccatc aagttattat ggatactaaa gaaaaaatta caagagaggg ttttaagaat
      721 tctaatgcaa aaatgataca aaaaggtgct gttgttgttt caatttatgc aactattggt
      781 agagttggaa tattaggcga agatatgaca acaaatcaag ctatagtagc tattattcca
      841 aatgaagaat ttataaataa atatcttatg tatgctattg attattttaa atttcaatta
      901 tataacgaag ttattacaac ttcgcaacaa aatataaatt taggaatctt gcaaaatatg
      961 gttattccaa aaccaccgct tgaaattcaa aaacaaatcg tagcagagtg tgaaaagata
     1021 gaagagcagt ataatacttt aagtttgagt ataaaagagt atcaaaacct aatcaaagca
     1081 atgcttcaaa aatgtggtat tatagaggac agtcaagaat atgaactaaa ttctatttta
     1141 gataaaatta ataatttgtg taaaataaat ttggatagtg aatttttatc atcatttaat
     1201 aaaacaatta aagaatatgc tttatcaaat ccaattttta aactaagtat tggaaaaaga
     1261 gttttaaata atgagctgct tgaaaatgga caaattcctg tttatagtgc aaatgtgttg
     1321 gaagtatttg gatttgttaa taaagaaatt ttgcaagatt atgataatga ttctgttttg
     1381 tggggtatag atggagattg gatggtggga tttataccaa aaaataaaaa gttttatcca
     1441 actgatcatt gtggggtatt aagggttgat gatacaaaaa taaatgctaa atacataagt
     1501 tttattttaa atgaagctgg taaaaaacaa ggattttcaa gaaaacttag agcttcaata
     1561 gatagaataa aagcattaag agttaaactt ccttctttag aatttcaaga tcaaatagca
     1621 gatataattg acaagattga gaaaaaaatc aatgaatata aaatagaact tgatagatta
     1681 gaaaaagaaa aagaaaaaat cttgcaaaaa tatttatttt cttaaagcat ttttcgctaa
     1741 actttgtaaa ttttataagg tttagcgatg aaaaacatta tgatattaag cggagcgggt
     1801 ttgtctgctc caagtgggct taaaactttt agagataatg atggactttg ggaagaatac
     1861 gatgtgatgg aggtttgctc tgcaacaggt tttagaaaaa atcctaaaaa agtacttgat
     1921 ttttacgatg caagaagggc acaacttcaa aatgtaaagc caaatcatgc tcatgaaaaa
     1981 atcgcacaat taaaagaaaa atggggtaaa aacctttttg tcatcacgca aaatgtagat
     2041 gatttgctag agcgtgcagg gtgtaaagat gtgattcatt tgcatggctt tttgcccgaa
     2101 cttcgttgcc taaaatgtga aggaattttt aatataggct atgaaaaatt cacagataaa
     2161 caatgcccaa aatgcaaaag taaggattta agacacaata tagtcatgtt tgaagagcaa
     2221 gctcctgctt atgctacgct ttattcttta cttcatcaaa cttcattatt tattagcata
     2281 ggcacaagtg gggcggtttt gcctgtgggg cagtatgctt caatgtgtga aaaaagtatt
     2341 ttaaatattt atgaaaaaga tgtgaattta gagcgatatt ttgataaaat ctatatagaa
     2401 gatattataa gcgctattga taaaatcaca cttgatatag aaaattttat gaaagatggt
     2461 aatgtttgat tcttttttaa gtggagtttt tttgggcttt ggagtgagtg tgccttttgg
     2521 atctgtaaat attttgattt taacttatgc actaaaagct tttaaaaatt ccatagctgt
     2581 aggacttgga gcatttagta tagatatgct ttatcttttt ttgcttcaat ttgggctttt
     2641 aaatttctta gacaatgtca tttttatgcg ttttttggcg atttttggtt tttgtttttt
     2701 aacttatatg gcgtatttga tgctaagaaa aaagaaagaa agcttaaatt tagagcataa
     2761 agaatttaaa gaaagtcttt tgaaaagtta tattaaaggt atcattttaa atggctctaa
     2821 tccttatgtg ataggttttt ggcttagtgc tacaggcata gttttaagca atcaacacac
     2881 ttattctacg atactggggc ttgttgttgc tattcttttt tggataggtg ctttagcttt
     2941 tgttgtcgca aaatacagct atctttttag tgcaaaggtg attcgtatta tcaatatagt
     3001 ttcagctttg attatagagt atttcgctct gagtttatta tacaaaactt ttataggata
     3061 aaaaaatgaa tgcaaaagaa tttttaatcg aacttttaaa atttaaatct gttacgccaa
     3121 atgatgatgg agctttaaat ttcatcgcta tggaactgag tgattttgaa gcttttttta
     3181 tagaaaaaga ggggattaaa aatctcttgc ttactaagaa atttaatgat gagggtgagc
     3241 atttagcttt tggtgggcat gtagatgtcg ttcctgcggg tgagggttgg aaaaatgatc
     3301 cttttgagcc tttggaggaa gaaggcttta tctatgcaag gggtgcacag gatatgaaaa
     3361 gtggcgtagc tgcttttatc gatgctgtaa aggatgttag ctttaaaggg cggagattaa
     3421 gccttatttt aacaagcgat gaagaaggcg aggcaaaata cggaacaaaa gctgttttag
     3481 aatggatgaa agaaaaaaat atgctacctg attatgctgt ggttgctgaa cctacttgcg
     3541 taaaaaaaat gggcgatagt atcaaaatag ggcgtcgtgg ttctatcaat ggaaaacttt
     3601 taatccgtgg aaaacaaggg catgttgctt atcctgaaaa atgtatcaat cctgtgcatg
     3661 attttgcacc ggttttaaag cttttagcgg gttttgatct tgatccaggt agtgctgaat
     3721 ttagtccttc aaaaatcgtt ataactgata ttcgtggagg tatgggggta tgtaatgtaa
     3781 cgccaaatga tttaaaactt atgtttaatg tacgcaattc ccctgataca agcttagaag
     3841 atgtaaaaag ttatgtagaa aaaatttgtc atggtttaaa ctatgagtta gagctaaaac
     3901 aatcaagcga agcttttttg acaaatatcg ataataaaat cgttcaaaaa atgaatgaaa
     3961 gcgttcaaaa aatcactcat gaagtgccag agcttaatac caaaggcggt acaagtgatg
     4021 caaggtattt tgcaaaatac ggtgtaaagg tagtagaatt tggggtttgt aatgatagaa
     4081 ttcacgctat tgatgaaagg gtaagtatag aagaatttga aaaactttgt cttgttttta
     4141 aagacttgat agaaaatttt taaaggttta gaatgattga ggaaatttta aaagatagtg
     4201 attataagct agatctattt agtaaaaaag ctattgctga attggaaact aaaattatag
     4261 ctaaaacaaa caaaaataac caaattatat actatactaa ttgccttatc cgcgataaag
     4321 aaattaaact tacgccagaa gaaattgtgc gccagcttta tatcgataag cttttaaatg
     4381 aatataacta tcctaaagat atgataaaaa ttgaatttgg tgtgcatttt ggacgcgaag
     4441 taaaaagggc tgatattgtg ataatggata aaatccaaat cacagtccca tacatcatta
     4501 tagaagtaaa aaagccaaag ttgaaagatg gcaaagaaca attaaaaagt tattgtaatg
     4561 ctacaggtgc aactatggct gtgtggtgta atggtaaaga aattagctat tatcatagaa
     4621 aagatccaaa ttattttgaa tctattccaa atattcctgc atcaaaccag acattaccgg
     4681 atctgttgaa agtaaaattt acctttgatg atttgattaa agaagatatt ttaaaaagtc
     4741 aaaagcgaag tttaaagaat ttagttacag aaatggaaga tgaggtgttg gcaaatgctg
     4801 gagttgatgt atttgaagaa tgttttaagc ttatatttat aaaacttttt gatgagctag
     4861 agggtgcaag agatagaaca aagagcttag agtttagaaa ttatggagag tctgattctg
     4921 aacttaagca aaaaatagaa aaactctttg ataaagcaaa gaaaaaatgg gaaggtgtat
     4981 ttaataatga tgagaaaatt aaactttctc cttcgcacct aagtgtatgt gtatcatcat
     5041 tgcaaaatgt aaagttattt aactcaaatt tagaagtgat tgatgatgct tttgaatatc
     5101 tagtgaataa atcctcaaaa ggtgaaaaag ggcaatattt tactccgcgt tatgtaatag
     5161 atatgtgtgt aaaaatgcta aatcccaaaa aagatgaaag tatgatagat actgcaagtg
     5221 gaagttgtgg atttccgata catacttgtt tttatgtgtg gcgttcaatt tataaagaaa
     5281 gaggcataga agcaagtcat ctctttacag cccaagaaaa gatttctgag tgtcaagatt
     5341 atgtaaaaga aaaagtgttt ggtatagatt ttgatgaaaa gagtgtgcgc gtatcaaaaa
     5401 tgcttaatct aattgcaggt gatgggcata caaatgtttt gtatttaaat tccattgact
     5461 ttgatagatg ggatgagtgg gtaaaagatg atgaagattg gcaagatgtg tattttgaag
     5521 gttttaaacg cttaaaaaat ttaagagtaa ctaaaaatca aaatagagat tttaattttg
     5581 atgttttaat ggcaaatccg ccttttgcag gagatataaa agagagtaga attttagcta
     5641 gatatgagct aggcaaaaaa gaaaatggca aacctcaaag taaggtagga agagatattt
     5701 tatttattga acgaaattta gatatgttaa agcctggtgg tagaatggct attgtattgc
     5761 cacaagggcg ttttaataat tcaagcgata aatatataag agaatttatc gcacaaaaag
     5821 ctagaatctt agcggttgta ggacttcatg gaaatgtctt taagccacac acggggacaa
     5881 aaacaagtgt tttattttta caaaaatggg atgataaatt atgtccaaag tgtgaggact
     5941 ataatatctt ctttgctact atgaatgagc ctagtaaaga taattcaggc gaaaagattt
     6001 attacccact tttagattct catgatcatt tagtagtaaa acatgattta tttcatccgc
     6061 atttagaagg agatgagcct ataaaacaaa aagatgaaag ccaagaagag tttgacaaaa
     6121 gaatacaaga atatagatta aatgtagaaa aatataaaga cttgcaaaaa gatggcatag
     6181 ctgaagcttt tattgaattt gcaaaagcag aaaatttgag tttttggaaa gaataagtga
     6241 atgaataata tgaaagaatt taaaattttt tgcgatgaaa gcaatcattt attttacaaa
     6301 gataatc
//
LOCUS       DAEBKH010000090         6246 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.090, whole genome shotgun sequence.
ACCESSION   DAEBKH010000090 DAEBKH010000000
VERSION     DAEBKH010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6246)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6246)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6246
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.090"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            12..578
                     /gene="rsmG"
                     /locus_tag="KIL20_001224"
     CDS             12..578
                     /gene="rsmG"
                     /locus_tag="KIL20_001224"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HBD2721247.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNIADIGSGAGFPAVFLAFLLQNNFHLFEPNPKKAAFLRT
                     LKIECELSNLHIYKEKVQEYQNIFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDYEIFENNLRKYCILK"
     gene            complement(594..1166)
                     /locus_tag="KIL20_001225"
     CDS             complement(594..1166)
                     /locus_tag="KIL20_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721248.1"
                     /translation="MKKILVSVLSSCLLASALSAVSFKEDSLKVSFEGYKTKDMIGTK
                     GEFKNVEYKFSKNTKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDT
                     DIKVVFQDVIAGENKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSK
                     ALKALSDVAAGHGGISWPLVDISFNADLAE"
     gene            complement(1256..2353)
                     /locus_tag="KIL20_001226"
     CDS             complement(1256..2353)
                     /locus_tag="KIL20_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HBD2721249.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFMIALFVGMKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLIFGGYFLTLAFKGILW"
     gene            2467..3348
                     /locus_tag="KIL20_001227"
     CDS             2467..3348
                     /locus_tag="KIL20_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HBD2721250.1"
                     /translation="MKIKDMEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFD
                     GILFERLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISE
                     HFLAPILFDFKAEFKNIEIHSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLE
                     INFWQDDELIVATSDKKLNEKEFYIDELLEQKWILREAGSGLRDKFLNEIGASSKKLN
                     IFLELDRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLKNIDLKRKFYTLKRK
                     NYNFNRALEKFEKIFKS"
     gene            3428..5296
                     /gene="rpoD"
                     /locus_tag="KIL20_001228"
     CDS             3428..5296
                     /gene="rpoD"
                     /locus_tag="KIL20_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HBD2721251.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTAKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(5311..5823)
                     /locus_tag="KIL20_001229"
     CDS             complement(5311..5823)
                     /locus_tag="KIL20_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HBD2721252.1"
                     /translation="MKKIYIIRHAKASKSGDIDDFERKLTKSGKEDLKKLFKNLALHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNKICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPGLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(5820..>6246)
                     /locus_tag="KIL20_001230"
     CDS             complement(5820..>6246)
                     /locus_tag="KIL20_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HBD2721253.1"
                     /translation="FNGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRILETYLGALRF
                     IFIYFIGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVLDKNSTKGLI
                     VAILLMSFAPLLMGVNVAWYGHIFGFMCGYILAKIKEVK"
BASE COUNT         2566 a          964 c          837 g         1879 t
ORIGIN      
        1 atcttaaata aatgattttt aaagattatg attttttgca aaactacgat ttaaaaaact
       61 ttgaagaaaa ggtaaaaatt tataaagaat tattatctaa atttaatcgc attcacaatc
      121 ttactcattt aaaaaatata gatgaaaata tctttgatag tattaaaatt ttagattttt
      181 atgatttttc taaagcaaaa aatattgccg atataggaag tggcgcagga tttccagctg
      241 tatttttagc ttttttactg caaaacaatt ttcatctttt cgaacccaat cccaaaaaag
      301 ctgccttttt gcggacacta aaaatagaat gcgaactttc aaatttacat atttacaaag
      361 aaaaagttca agaataccaa aatatcttta aagccgatat catcacttca agagccttaa
      421 tggatgtcaa gcctttgctt gaaatttgca aaaatctaaa agatgaaaat acggttttta
      481 ttttatggaa aggtagtgaa atttatcaag aacttgaaaa tataaaagat tatgaaattt
      541 ttgaaaataa tttaagaaaa tattgtattt taaagtagcc ctaaggctac tttttattct
      601 gctaaatcag cattaaaact gatatccact aaaggccaag aaattccacc atgtcctgca
      661 gccacatcgc ttaatgcttt taatgcttta gaaccatttt taaaagtatg caaatcaagt
      721 tgtcctttag cttcaaattt attatctttg atggtataag ttaaaggcac aatagtactt
      781 tttttatcca tagtaatttt tgctgaaata acgcctttat tttcacccgc aatcacatct
      841 tgaaaaacaa ctttaatatc cgtatctccc aataaagcag ggaaaaatac ttttgtgata
      901 ttattggtta taatatcatt gccttcaccc ataaaagcat tacttggctt tatggtagct
      961 ttagcgcctt taagataact tgccaaatcc tttgtatttt tagaaaattt atattctaca
     1021 tttttaaatt caccttttgt tcctatcata tctttagttt tatatccttc aaaagaaacc
     1081 tttaaactat cttctttaaa agatacagca cttaaagccg aagctaacaa gcaagaactt
     1141 aaaacactta caagaatttt tttcatcttt attccttttt aataaattta attaatgaat
     1201 taaattatat tcttagttga ttaataaaat aaaattttct aaaaaataat ttttattacc
     1261 aaagtatacc tttaaaagct aaggttaaaa aatatcctcc aaaaatcaaa acaagcccta
     1321 aaacaaaagc caagccaaat accctagagc cactttttaa aaatttttta aagtcaattt
     1381 gcaagcctaa agctgccata gcaaaaacga tacataaggt acaaagtgtt ttacctaaag
     1441 aaataatatc actcgtagca atacctaaaa tactttcttt acttgctaga taagtattta
     1501 aaactatcat acctaaaaat gcaaaagcaa aataaggtat agtgatactt tttgcagttt
     1561 ttccactgct tgaatgctga tttttagcga aaaaataagt cactataagc aaaaaaggaa
     1621 caagcaaaat cactctcatc atttttataa tcactgcaac attagaagca ccttgctcaa
     1681 atcctgccat atcttttgcc atttcagcag cacctgcaac atttgccacc tcatgcaaag
     1741 tagctcccat aaaaaccccc atagcatttt gatcaaaaaa aggaaaaaga tttaaagaaa
     1801 aagctatggg atataagaac ataaacacaa gtccaaaaat caccaccgta cctacggcta
     1861 aaattccctt aaaaggatca cttttcaaac ttgactctag tgctaaaacc gctgccgcac
     1921 cgcaaatcgc acttccggct ccaacaagca tagaagtttc tttatcgagt ttaaaaattt
     1981 tcattcctac aaataaagca atcataaaaa caaaaaatat cactatagca gaaagcaaaa
     2041 accctttcaa ccctacactt aaaagctcag ttaaagtgat attaaaacca tataaaacaa
     2101 taccgagtct taaaagcttt ttcgcgctaa aatgcactcc agcttgaaaa tgatgttggt
     2161 atttaaaaaa ccaaggagaa agcaacactc ctatgatgat agcaaaggca gtcgctgcta
     2221 aatgggtagt atctttgata ctttgaacac tagaaagata catagcaaaa atcactatac
     2281 aagcagtaaa aagcaaaccc ttaaaatttg atcgcactat agccacgcta tgtgctaaaa
     2341 aacttgtttt catttatttt ccttttttgt aaattttgtg ttattatatt ttttttatta
     2401 aaattataaa aatatattat tttaattttt ataataaatt ttttttatta aataaaggaa
     2461 tcactcatga aaatcaaaga tatggaaata tttttagatc ttttaaacac tcaaagtcca
     2521 actcatacag ccaacaattt ttccataact caacctaatg tttcaatagt aattaaaaat
     2581 ttagaaaata aatttgatgg tattttattt gaaagacttg gaaaaaaact cttacctaca
     2641 ccaaaagctt tagaactagg aaaaaattgg ttaaaaatta tacaagctta ctatcaaagc
     2701 ttagaaaaat taaacgacga aagtatgctc ttaggggaaa taaaaatagc ctcaactcaa
     2761 agcatttctg aacatttttt agctcctatt ttatttgatt ttaaggcaga atttaaaaac
     2821 atagaaattc actctcaaac gcagaattca aaagaatgtt taaatttact aaaaaacgga
     2881 aatatagaat ttgcaatcat tgaagcagaa cttgatccgg ctttagtgga gtatgaaaat
     2941 ttagaaataa atttttggca agatgatgaa cttatagtag ctacaagtga taaaaaactc
     3001 aatgaaaaag aattttatat cgatgaactt ttggaacaaa agtggatttt aagagaagca
     3061 ggctcaggct taagggataa atttttaaac gaaattggtg caagctcaaa aaaacttaat
     3121 atttttcttg agcttgatag aatggctgcg attaaagaac ttgttttaca aaaaaaagca
     3181 atctctattt tttccaaaaa aagcatagaa aaagaattaa aaaattcaac actttatgaa
     3241 attaaattaa aaaatatcga cctaaagcgt aaattttata ccttaaaaag aaaaaattat
     3301 aattttaaca gagctttaga aaaatttgaa aaaatattca aatcataagc ataataaccg
     3361 atttatatag aaagttaagc aatttttaga taaaatccaa agcttatata aatttcaagg
     3421 ataatcaatg aacgccaaaa ctcaagaagc tgaattagaa gaattatttc aagaaaatgc
     3481 aaaagattat atcacatatg aaaaattggt aaaatatctt acaaaacaac caagtgcatc
     3541 aaccgctaaa aaagtgcaag cattaatgaa aaaacacaaa gtacaacttt tttcagcagc
     3601 cgaaattgca caaatgaaaa acatagaaga tgcaaaaaga cttcaagaag aaaaacaaaa
     3661 actccaagat acaagccttg agaacgaatt tgatttagcc aatgaaaacg atttattaga
     3721 atggagcaga tcagactctc ctgttcgtat gtatttaaga gaaatgggac aaattgcttt
     3781 attaaacaaa gatgaagaaa ttgaaatttc caaaaaaata gaacttggcg aagatattat
     3841 cattgatgct ttttgttctg tgccttattt gatagatttt attttagatt ataaagaacc
     3901 tttaataaac agagaaagaa gggtaaaaga actatttaaa agctttgacg atgaagaaaa
     3961 aagtgatgat aaacttgatg aacttgatat agatgaagat gaagaaaacg aaacagaatt
     4021 agaatcagat gaagaaaata ctaaaaaaaa cagcaaaaaa gaagatgaaa gaactttaaa
     4081 agttatagaa aaatttaaag ctctagaaaa agctaaaaaa gattggttaa aaacatccaa
     4141 agacaaagaa agtggagatg agcttttaga taaattaagc attgcgttca aaaaaaatat
     4201 tttaaaagaa aaattaatgg atctaggccc tacttcaaaa cttattagtg aaatcgtaaa
     4261 atcaatggaa actgcactaa aaagcgatga agaatttgac aaagaactta agcgtttaga
     4321 ataccgctta cctatgtttt ctgatgaact taaaaaacgc catgcagata ttttaaaaga
     4381 tattacaaaa ttgagcaaag aagaaatcac agagcgagct ttagaaacaa ccatggtaag
     4441 cacttatatg gaaattaaaa aactatttca aactaaagaa gctagtgaaa aaagctttga
     4501 tcttgaaaaa tcacgtttaa aagaaatttt agagcaaatt aaacgcggta aaaaaatctc
     4561 tgatgaagca aaaggaagaa tggcaaaatc aaacttgcgt cttgttgtaa gcatagctaa
     4621 acgctacaca aatcgtggtc tacctttctt agatcttatt caagaaggaa atataggttt
     4681 aatgaaagct gtggataagt ttgaatacaa aaggggttat aaattttcca cttatgcaac
     4741 ttggtggatc aggcaagcta tttcaagggc tatagctgac caagcaagaa ccataagaat
     4801 tccaatccac atgatagaaa ccatcaatca aattaacaaa attatccgcg aacatctaca
     4861 aaaagatgga aaagaacctg atgtcagtgt tatagctaaa gaagtaggtt taagcgtaga
     4921 taaggttaaa caagttatta aaatcacaaa agaaccaatt tctcttgaag ctccaatagg
     4981 aaatgaagat gatggtaaat ttggagattt tgttgaagat agaaattcac tttctccaat
     5041 ggatcatatc ttaaaggatg atttaaaaga acaaattgat gaagttttag atcaattaaa
     5101 cgatagagaa aaagcggtaa ttcgtatgcg ttttggttta atggatgatg aaagtgatag
     5161 aactttagag gaaattggaa aagagcttaa tgtcactcga gaaagagtga gacaaataga
     5221 aagttcagct ataaaaaaac tcaaacaccc taaagtagga agaaaactaa aaaattatat
     5281 tgaaggttgg aagtaagagt caatctcttg ctaaaaaccc aaatcttttt cttcttttaa
     5341 cttgcgcaca tgttcaaaaa aaactaattt tccgctatgt ttttttaaat ttttaaattc
     5401 cttaatatca aattctaaac acaagataga agaagttgga aaagaagcta aacatagcga
     5461 gcttaataac tctccaagct ccattaaacc aggattatga cccactaaaa atacttcgtt
     5521 aaactcatca tcaatatctt gcagaatttt tagcaaattt tcaacattac aaagatacaa
     5581 tctttcatca aaacaaattt tatttttatc aaaattataa aatttggcta tttttttcgc
     5641 tgttttagcg gttctaacag caggacttga tagcaccaaa tcaggatgaa tttcatgtaa
     5701 ggcaagattt ttaaaaagtt tttttaaatc ttcctttcca ctcttagtaa gttttctttc
     5761 aaaatcatca atatccccac tcttacttgc ttttgcatgt cttataatat aaattttttt
     5821 cattttacct cttttatttt agctaaaata taaccacaca taaacccgaa aatatgacca
     5881 taccaagcaa catttacccc cataagcaat ggcgcaaaac tcataagtaa aattgccact
     5941 ataagtcctt ttgtgctatt tttatcaaga acagcataaa agcccattaa aacacaaatt
     6001 gcaccactag cgcctatgac atttatattt tctccgaaat atttaaaatc aaaatacaca
     6061 taaaaaacac ttaaaagtga acacaacaat ccgccaataa aataaataaa aataaaacgc
     6121 aaagcaccta aataagtttc taatatacgc ccaaattgaa acaaaactat catatttaat
     6181 ataagatgag ttaaatttcc atgtaaaaac attgaactta aaagttgcca ataagctcca
     6241 ttaaaa
//
LOCUS       DAEBKH010000091         6212 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.091, whole genome shotgun sequence.
ACCESSION   DAEBKH010000091 DAEBKH010000000
VERSION     DAEBKH010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6212)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6212)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6212
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.091"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..444)
                     /locus_tag="KIL20_001231"
     CDS             complement(<1..444)
                     /locus_tag="KIL20_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721254.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLALLEKNSFYDDLSLPKNYTLN"
     gene            complement(441..962)
                     /locus_tag="KIL20_001232"
     CDS             complement(441..962)
                     /locus_tag="KIL20_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HBD2721255.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRKIPSYEVDQNSYVANFKISA
                     LQNINSDDLKVQALLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQ
                     ETVGFFSYELNAQ"
     gene            complement(949..1551)
                     /locus_tag="KIL20_001233"
     CDS             complement(949..1551)
                     /locus_tag="KIL20_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721256.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            complement(1548..1649)
                     /locus_tag="KIL20_001234"
     CDS             complement(1548..1649)
                     /locus_tag="KIL20_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721257.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            complement(1646..1867)
                     /locus_tag="KIL20_001235"
     CDS             complement(1646..1867)
                     /locus_tag="KIL20_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HBD2721258.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLAILVVLTIWGLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            complement(1864..2727)
                     /locus_tag="KIL20_001236"
     CDS             complement(1864..2727)
                     /locus_tag="KIL20_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HBD2721259.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            complement(2727..2990)
                     /locus_tag="KIL20_001237"
     CDS             complement(2727..2990)
                     /locus_tag="KIL20_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HBD2721260.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYWYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            complement(2995..3660)
                     /gene="ccoO"
                     /locus_tag="KIL20_001238"
     CDS             complement(2995..3660)
                     /gene="ccoO"
                     /locus_tag="KIL20_001238"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HBD2721261.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDTENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            complement(3673..5139)
                     /gene="ccoN"
                     /locus_tag="KIL20_001239"
     CDS             complement(3673..5139)
                     /gene="ccoN"
                     /locus_tag="KIL20_001239"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HBD2721262.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLT
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            complement(5265..5945)
                     /locus_tag="KIL20_001240"
     CDS             complement(5265..5945)
                     /locus_tag="KIL20_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HBD2721263.1"
                     /translation="MSQECKELIILVVEDEIKTRESLINVLSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDCLVGEKIEANMLVKISEEYQFNKTKRTLIHNGKEIVLTKK
                     ELAFISLLLKQPGVLVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            complement(5948..>6212)
                     /locus_tag="KIL20_001241"
     CDS             complement(5948..>6212)
                     /locus_tag="KIL20_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HBD2721264.1"
                     /translation="IITITFSKFGKNYLKITIKDNAGGIDKENLDKIFQPYFTTKHPS
                     QGIGVGLYISRQIIESFQGKIKVKNGKDGACFEVFLKLKERVE"
BASE COUNT         2175 a         1197 c          743 g         2097 t
ORIGIN      
        1 attaagagtg taatttttag gtaaagaaag atcatcataa aaagaatttt tttcaagcaa
       61 agcaagataa ttcttatata cctcatctaa aatttccaaa tgttcattat aggtagcata
      121 ataatcattg tttttaagat cttctatgct ttttttttct aaactaagtt ctttaaaaaa
      181 agaaaaaaga tattcgttat ttttcaaaaa agcaaaaaat tctaccgaaa ttcctagttt
      241 tttttctaaa tccttacttt ttagacaagc ttcttgcatt aaaagcaaac tttcataaga
      301 acttgcctta tgaaaattgc tcaaacaaac tttatctaaa aattcaccta tatgaatagc
      361 actatctaat aaagcatttt gctgtttttt ttggttataa tactctctaa tttgtcttga
      421 agaactaaaa attcttaatt tcattgagca tttaattcgt agctaaaaaa acccactgtt
      481 tcttgatttg cataaaactt tagcttaagc tcccatctac ctttatctag tttaggtaaa
      541 gcgatactta aaattccatt tttaacttgt ccttctaact tttgatcaaa atttttagtg
      601 aatggtcttg taagaagagc ttgaactttt aaatcatcag aatttatatt ttgtaatgca
      661 gaaattttaa aatttgcaac ataggaattt tgatccactt cataactagg aatttttctt
      721 ttaccaataa aagtgatttt atcattttga aaatttactt taaaaaattt atcaaaattt
      781 acttgttgtt tttgtatttg attgtaatta ttttcaacat tttgataaga gtcaaaataa
      841 aaatcatcct catacacagg atggtgactt gctataaaaa tcgttacaat acaagcaata
      901 attatagcca aaagtgaaag caaaatacca taaggccaaa aacttttttt agtttctaac
      961 attttttttc ctctttattc ttctttgtgc atagtataac aatgcaaagc aaataaatcc
     1021 atagataagt attcttaaga tattgatagt atcacgattt gcattgccta tagaatgttc
     1081 taattgtaat cccaaggatt ttgccacacg atctacaata tctgcataac cattaagtat
     1141 agcagcatta taaatatcac ctttatttgt agctaatatc ggcaaaatag atcctgttcc
     1201 aggataagga ctaagtacag cttctttatc aatcaaagct aaagcacctt ttgagcccac
     1261 tatatcaact ttgtgagaat tttttgacaa aagaagcaat atataagatt gaggaagttc
     1321 tttttgttta tttagtaaag tttcaatttc agttttatca ccaaccataa caccgataaa
     1381 aatattactt ttttggtaaa gctcttttcc tataagatta atctcattac ttactttttg
     1441 acttaaaata ttttcattaa aaagtacagc atcaagagca aaaaccctag aaggcaataa
     1501 aacaaagaag aagatggcta aaaaaaaacc atcttgtaat atttttttca tcctatatga
     1561 agatgattta cggtcaaaac cgaccaagcg gtgattgcag cagcaacaac taaaccaata
     1621 acaattaaat attccaaagc cttactcatt gtgcttcctt tatacttcta tgatcttgtt
     1681 cttttgaacc aaacatcttt acactttgta catctttaag actatatggc ttttgcatca
     1741 cttcttgctg agctttaaga ccccaaatag ttaaaactac taagatagca agtaacaaaa
     1801 ccgtagcaat taacatacct gtaacacctg aaagagaaaa cacgcatcta ttattatttt
     1861 ccatcattca ccccttgaaa gagaaattac atactcgcca acagcttctt tttgaatatc
     1921 attaagtgtt ggaaaactcg gcattgttcc tataaaacca gccttaccac tatgtaaaac
     1981 atctactaca aaagctgcag aaccgtattt tgtaagatct gggaacattc catcttgacc
     2041 ttttccatct tctccatggc atgctgcaca agttgcataa gcttctttac cttttgctac
     2101 taaattttca tttgcagttt tcttaatagc tgaaagatct tttgctacat aagcagcaat
     2161 agcagggata tcttcttctg ccacgcctaa atcagcagca ccaagcattt ctccacctgg
     2221 aaaattcata ccttttgaac catgtttaat tacattgatt ataccttctt cgctacccca
     2281 aatatttaaa ttttgagctt taccattgat accatcgcct gtaattccat gacaagctga
     2341 acactgaact aaaaagatat tttgacccat tgctatttta tcttcaggag ataaattttt
     2401 aaatttttct tcgaattttg tattatgagt tgctacttct tcattgtatt gacctatact
     2461 tgaaaaagaa tttaaaggat atccccatag aaaataccaa atagcccaaa caatagtcag
     2521 gaaaaatacc acagcccaac cagtaggaac agcattttta tactctccta ttccatccca
     2581 actatgttca ctaagctctg actcgccttt tttttctttc atttgcttaa acattctacc
     2641 cacaataact agtgtgatta aaatgataag aatagctcca attaaagata agagattaac
     2701 attatcttct aaatttaacc attgcattaa gcactccttt tactttctaa tacactatca
     2761 tcaatatcat cttttaaggc aaggtttgca taattttcat aatttctctc gccttttttt
     2821 tctgttctat ataaatgata ccaatacgca tataatacta ttgacaaaaa catcacgagt
     2881 gcaaaaaaac cataaccttg gaaaatctcc cactcatgtt tttgaactgt tgctaaatca
     2941 aatgtgatta aatttttaat cacatcaaaa actattgata aatgttccat catcttactt
     3001 taagctattt aaataagcga tcaaagcaac tatttctttg atttcacctt tagcaaaagc
     3061 atcttttact tcttgatttt tcatttgatc aactatagcc tgagcttcag cttttacttc
     3121 agcttgcgca tcctcccaag aaccaagttt tgttccattt tctgtatcat aaggaacatt
     3181 gaaaactttt ttcacagtta aagcctcagc ataagcagtt tcaatatctg cattattttt
     3241 aaacatatgc ttatatgaag gcataataga atctggaaca acagaagtag gatcccacat
     3301 atgattttca tgccaatcag ccgttctata atttcctaca cgagcaagat caggtcctgt
     3361 tctttttgaa ccccaaagaa aaggtctatc ataagcaaat tcaccactta cagaatacat
     3421 accataacga tctgtttctg atttaaatgg acgaataagc tgtgaatgac aagcattaca
     3481 actatcttta atatatactg cacgccctgc aagttgtaaa actgtataag gttttttacc
     3541 ttcaattggt cttgcatttt ctgcaaaatt tggcaaaact tcaactatgc ctgcataagc
     3601 aatcactaca aaaacagcta cagcaaaaaa gaatggattt ttttctaacc aactaaacat
     3661 attttctcct ttttatgctg ccataggcga agcgcttttt ggttctttat caagcactct
     3721 tccacaagca attgttttgt aaatattata agtaaacata aagaaaccga taagatacaa
     3781 caatccacca atcgctctaa tccaataata aggaacaata gccacaacag tatcaataaa
     3841 gctataaagc aagttaccat actcatctgt cgctctccac atcatacctt gagtaatacc
     3901 cgcaatccac attgaagcaa aataaagaac tatacctgtg gtttgaatcc aaaattgagc
     3961 ttccgttaaa gatttgctat aaagctctct tttgaaaact ctaggggtca tatgataaag
     4021 cgcagccata gtcataaatc ctacccaacc taatgttcca tcatgaacat gtcctggaat
     4081 ccaatctgta aagtgtgcta aagcattaac agatttaatt gaaagaattg gcccttcaag
     4141 tgttgagaac atatagaaag ttgatgccaa aatcataaat ttaatcaatg gactctcgcg
     4201 aagctgactc cactcacctt tcatagtaag caatatatta atcgctgaac cccaagaagg
     4261 taaaatcaat actacagaga aaaccgaacc catagtttgc atccaatcag gtacagttga
     4321 ataaatcaaa tggtgaccac ctgcccaaag ataaacaaac attaagcccc aaaatgcaaa
     4381 taaagagagt ttataagaga aaatcggctg accactttct tttggcaaga agtaataaat
     4441 ttgagcaata atacccacag taaatacaaa tgccacagca ttatgtccat accaccattg
     4501 tactaaagca tcatttgttc ctgcatacat tgatacacta tgccaccatt tacccattcc
     4561 agtaacaaaa taagttggta cttccatgtt gttaaaaaga taaagcatag ctatacctaa
     4621 aaatgtagct atataatacc atagagaaat ataaagagtt ttttcacggc gaattccaat
     4681 aagtccaaaa atacttacac cccataaaac ccaaacaaga acaacaagaa tgtctaaagg
     4741 ccactcaagc tctgcatatt ctttagatgt agtcacaccc ataaacaaag atataacagc
     4801 taaaaccata gtaagcatat aaagccaaaa atgaagctta ccaacagcca ttaaaaatct
     4861 tgactcagcc atactcactt taagaacacg ctgacctata taataccaag ttgcccaaat
     4921 ccctgaaagc ataaaaccaa aaatcacacc tgaagtatga agtggtctaa gtcttgaaaa
     4981 agtggcatat tctcctgcta aataatttaa attaggatat gccatttgaa aagctataag
     5041 agttcctata gccataccaa caatgccgaa caatatggtc gcaaacataa aatatcttgc
     5101 aaccgtatag tcgtaattta atacattacc tggatgcatc gactttctcc ttaaaatttt
     5161 tgataacaag agaatattat agaatattaa ttatacattt tttcttaaaa atgataattt
     5221 tgttaatcat ttgttatgct ttatatttta aggctaaatc agtcttattt attgatattt
     5281 atcttataac ctaaacttgg cacatttttt ataaaatctt cacccacttt atctcttact
     5341 ctttttataa atgttcgaac agcagtatcg ctcacatgct cacctatcca aacatttttc
     5401 ttaatatctt catgcaaaac caaaacccca ggttgtttta aaagcaaaga aataaaagcc
     5461 aattcttttt tagttaaaac aatctcttta ccattatgaa tcaaagttcg tttagttttg
     5521 ttaaattgat attcttcgga aatttttaca agcatgtttg cttcaatttt ttcacctact
     5581 aaacaatcta agactttgaa taattcttct atatcaacag gtttaattaa atatttatct
     5641 ataccgatat caatggaacg caaaagtctc tctttctctg aatacgcact aagaacaaca
     5701 attgggacat catctgaaat ttctttaatc tctcttgcca tatccaatcc atccataata
     5761 ggcatagcaa tatctgtgat aactaaatcc ggtttaaatt ttttaaattt tttaagccct
     5821 tcatctccat tttgagctcc gattacttta ctaaagcgtt cgcttaatac attaatcaat
     5881 gattctctag tcttaatttc atcttcaact actaatatta tcaattcttt acattcttgt
     5941 gacattttta ctctaccctc tcttttagct ttaaaaatac ttcaaaacaa gccccatctt
     6001 ttccattctt aacttttatt tttccttgga aactttcgat aatttgtcta cttatataaa
     6061 gtcctactcc tataccctga ctaggatgtt ttgttgtaaa ataaggttga aaaattttat
     6121 ctaagttttc tttatcaatc ccaccagcat tatcttttat tgtaattttc agataatttt
     6181 ttccaaattt tgaaaaagtt attgttatga tt
//
LOCUS       DAEBKH010000092         6110 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.092, whole genome shotgun sequence.
ACCESSION   DAEBKH010000092 DAEBKH010000000
VERSION     DAEBKH010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6110
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.092"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..421
                     /locus_tag="KIL20_001242"
     CDS             <1..421
                     /locus_tag="KIL20_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HrgA protein"
                     /protein_id="HBD2721265.1"
                     /translation="LFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQEIDSEV
                     LSELRRLNQSFGIGVIKLEKDISNSQILLSAKEKELDIQTLNMLINKNPNFKEFIDDI
                     NKQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            422..1189
                     /gene="hisF"
                     /locus_tag="KIL20_001243"
     CDS             422..1189
                     /gene="hisF"
                     /locus_tag="KIL20_001243"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HBD2721266.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINIPFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKNSGKSTLE
                     WVKEVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKIEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            1191..1814
                     /locus_tag="KIL20_001244"
     CDS             1191..1814
                     /locus_tag="KIL20_001244"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HBD2721267.1"
                     /translation="MQNFKELNEKIAWQKVDHLLPVIVQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEKSGNFLNIVDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLARLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(1838..2998)
                     /locus_tag="KIL20_001245"
     CDS             complement(1838..2998)
                     /locus_tag="KIL20_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HBD2721268.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     EGHQNIDLLKIIKDKFKDDEFAFVCLFEDKEPLSVESVYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(3024..4130)
                     /locus_tag="KIL20_001246"
     CDS             complement(3024..4130)
                     /locus_tag="KIL20_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HBD2721269.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNATEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSKRYLTA
                     AEKIWGFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            4253..5368
                     /locus_tag="KIL20_001247"
     CDS             4253..5368
                     /locus_tag="KIL20_001247"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HBD2721270.1"
                     /translation="MSEISLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSSVNLKYFDWTRL"
     gene            5365..>6110
                     /locus_tag="KIL20_001248"
     CDS             5365..>6110
                     /locus_tag="KIL20_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HBD2721271.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     VLLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKATEKEKLLDFIQNKNV
                     ILHTNSNTDDLKINCINLNDNEKNIDSNEI"
BASE COUNT         2177 a          993 c          951 g         1989 t
ORIGIN      
        1 gcttttttct tttgaactta aaattgcttt aaatttttca aatttaaaag aatgttattt
       61 tcaagctgta agtaattcta gctgggcaaa tgaaggctat ttggttgttt tacaagaaat
      121 tgatagcgaa gttttaagcg agttaagacg cttaaatcaa agttttggca taggagtgat
      181 aaaacttgaa aaagatattt caaattctca aattttactt agtgcaaaag aaaaagaact
      241 tgatattcaa acactaaata tgctgattaa taaaaatcca aattttaaag aatttattga
      301 tgatataaac aaacaaatta aagtgggcaa agaagcaaaa attcaagcta attttgatga
      361 aattaaaagc gatgaagaaa tggaaaaata tcttaaagaa aaatgtattt tggagaaata
      421 aatgcttaca aaacgcataa ttgcatgttt agatgtcaaa gatggcagag tagtaaaagg
      481 aacacaattt aaaaaccata aagatatggg agatatcata gaacttgcta ggtattattc
      541 tcaaaatggt attgatgaac ttgtttttta cgatattgct gcaagcgcta gaaaagaacg
      601 catatcaaga gaatgggtaa gtgaagtagc aaaaaatatc aatattcctt tttgtgttgc
      661 agggggtatt aaaagcgaag aagatgcggc tgaactttta gctaatgggg cagataaaat
      721 ttctatcaat tctcctgctt taaatgatcc aagcctaatc acacgccttg ctaaaagctt
      781 tggcgtgcaa tgcgtagtag tagggattga tagtttcaaa gatgaaaatg gaaatttaaa
      841 agtatttcaa tacacaggcg atgaaaaaac aagcaaaaat agtggaaaaa gcactttaga
      901 atgggttaaa gaagtgcaag atctaggcgc aggtgaaatt gttttaaata tgatgaatca
      961 agatggtgtt aaaaatggct atgatttaga acaattagaa gctgtatata aaatttgtaa
     1021 agtacctttg atcgcaagtg ggggagcagg aaaaatagag cattttttag aagcttttaa
     1081 actaggtata gatggggcct tagctgcttc tgtttttcat caaaaactta tagacattaa
     1141 agaattaaaa atttatctta aaaatcaagg cttaagtata aggatataat atgcaaaatt
     1201 tcaaagaact taatgaaaaa attgcttggc aaaaagtgga tcatctttta cctgtcatcg
     1261 tccaagatgc aaaaacttgt gaagttttaa tgctaggctt tatgaataat gaagccttag
     1321 aaaaaagctt agaaagtggc aaagtagtct ttttttcacg cacaaaacag cgtctttgga
     1381 tgaagggtga aaaaagtgga aatttcttaa atatcgtaga tttaagctta gattgcgata
     1441 atgacacgct tttaatttta gcaaatcctg tagggcctac ttgtcatacg ggcgatattt
     1501 cttgttttga aaaaatttct aaaaatgcgg attttgtttt tctagccaga cttgaaaagc
     1561 ttattaatgc acgcaaaaat gccgatgaaa atacttctta tacagcaaaa cttttcaaaa
     1621 gtggtacaaa acgcatcgca caaaaagttg gtgaagaagg tgtagaaaca gctttagcag
     1681 cgacagtaaa agataaagaa gagcttattt gtgaagcagc ggatttaatg tatcatttaa
     1741 gtgttttact tgcagatgca aatcttagtt tctcagatgt gatttcaaag ttgaaagaaa
     1801 gacataaagc ttaaagcttt atgtaaataa atttatatca atgcaaggct tcgttaagtt
     1861 tgactgcttt tttatttaaa gctactatca tagcaccgct tatagaatct tgacggaaat
     1921 gtagcccatt taaaccttta agctctaagc ctttgtaaat ttctttatca aaattaaaat
     1981 aaggattaag tttagcaagc tcctcagcat ctttgagtaa aaatttcgtt ccttctagca
     2041 ctgcaatacc tgcatcaact atacaattat cccctaaagg aattcctgtc actgaattag
     2101 cccctaaaag acaagcctta cctacgctta tagcattgcc acttgttcca cttaaaacac
     2161 ctaaaatcga agctccgcca cctacatcag aaccttctcc tactatagca ctcgaactaa
     2221 tacgcccttc aaccatacaa gctcctgttg tacctgcatt aaaattcaca taacttgccc
     2281 ctggcatgat ggttgttcct gctgctaaag atgcacccat tcttactttg gaactttcta
     2341 aaattcttgt attatcctca gggataatat gcgctaaaaa tcttggaaat ttatcaacaa
     2401 aatcgatttt tggatattga ttgctcattt ttaaacgcat ttcatttgct cttaaatact
     2461 caagctcgat aggtttatca tcgctccaag ctacattgct taaaagtcca aaagctccat
     2521 ttagattgat acttcttaaa ggtacttttt tagtagaaag caaataaagt tttagataaa
     2581 cactttctac acttaaaggt tctttatctt caaaaagaca aacaaaagca aactcatcgt
     2641 ctttaaattt atctttgata atctttaata aatcaatatt ttgatgccct tcttcttcta
     2701 aaaaaggttt aaaacaagaa agcgcaaaat caatatcttc taattttaaa gtttgcacaa
     2761 actcactcgc attaaaatca atctccacac ccctttgcat aaaagcttca agcatgattg
     2821 ccgctgagcc aaaattttgc tcataattaa tcaaagcaaa acttgcttgt aagattttat
     2881 ttttatttaa ctgtcctcta tcaagccttg ctataccaaa agctttaggt tttttatagc
     2941 cacttttttg ctcaatttgt ttgattaaaa gtaaaaaatc ttctttggta ttaatcattt
     3001 tcttttcctt atccacttaa tttttaatgc gaacacgcac tttttccatt catcacaggt
     3061 tgtatagcag aattatccgc accgccttca ttgttaatct tttctataaa gccccaaatt
     3121 ttttcagctg ctgttaaata acgctttgaa ctcacacttt cagggtgata aaaactcaca
     3181 ggcttgcctt catctccacc ttctcttact atcatttcta taggaatttg tgctaaaact
     3241 tcacttttat aggcttttgc catatcctca gccgttcctt tgccaaaaat atcatactct
     3301 ttaccattat caggacataa aaatccactc atattttcaa tcacacccgc tataggaatg
     3361 tgaagtttat taaacatatc taaagctctt ttactatcgt ctaaagatac ggtttgaggt
     3421 gtacttacac aaactcctgc agtaatagga atactttgtg cagaagtaat ttgcgcatcg
     3481 cctgttcctg gaggcatatc caaaaacaat acatcaagtt caggccaaat cacatcagct
     3541 aaaagctgct cgattgcttt cataatcata gctccacgcc acataagacc ttgaccctct
     3601 tcgatcaaaa cccccatact catcatataa acaccatgag ttaaaatagg ctttaatctc
     3661 tgccctacta cttcaggctg agttttggtt tcgcctagca ttcttggaat atttggccca
     3721 taaatatctg catctaaaat ccctactctt tttcccattt tagccatgga aattgctaaa
     3781 tttactgtag ttgtagattt gcccacacca ccttttccac ttgaaaccat gataaaattt
     3841 tttacttgtg gagcgatatt ttttccactt cttgaattgc ttttttcttc aggaattttt
     3901 ggagtaatga tattaagttc aatatttttt aaagccaaac tcgataaagc ttcagtggca
     3961 tttttacgaa tttcattagc tacttcagga tttgctgaaa cgatttctat atcaataaat
     4021 acaccatcat cttgaatttt aatatctttt acaaagttaa aactcactat atccttttca
     4081 aaaccaggat attttacagt ttttagcttc tctaaaattt gttctttcat gttttttcct
     4141 tgtcttttaa aaaaatcaat tttactaata aaatgataaa atttagcttt ttataagtgt
     4201 ataatatggt aacattataa aaaccaacaa tattaaaaag aggaatgaaa aaatgagtga
     4261 aattagcctc attatgttag cagctggaaa ttctactcgt tttaacacaa aggtaaaaaa
     4321 acaattttta cgacttggaa atgaccctct ttggctttat gcaacaaaaa atttaagctc
     4381 tttttatcct tttaaaaaaa tagttgttac ctctagtaat atcacttata tgaaaaaatt
     4441 tactaaaaac tatgaattca tagaaggtgg tgataccaga gcagaatcct taaaaaaagc
     4501 cttagagctc atagatagcg aatttgttat ggtaagtgat gtagcaaggg tattggtgag
     4561 taaaaatttg tttgatcgtt tgattgaaaa tttagataaa gcagattgta ttacccctgc
     4621 tttaaaagtt gcagatacaa cactttttga caatgaagcc ttgcaaagag aaaaaatcaa
     4681 actcattcaa accccgcaaa tttctaaaac caaattgctt aaaaaagcct tggatcaaaa
     4741 cctagaattt acagatgata gcacagctat agctgcaatg ggtggaaaaa tttggtttgt
     4801 tgaaggtgaa gaaaatgcaa gaaaactaac ctttaaagaa gatcttaaaa agcttgattt
     4861 gcctacacct agctttgaaa tttttactgg caatggtttt gatgtgcatg aatttggaga
     4921 gaatcgccct ttgcttttag caggagtgca aattcatcct actatggggc ttaaagcaca
     4981 cagcgatgga gatgttttag ctcactcttt aaccgatgcg attttaggtg ctgcaggact
     5041 tggagatata ggagagcttt atcctgatac tgatatgaaa tttaaaaatg ccaactccat
     5101 ggagctttta aaacaggctt atgataaagt cagagaagta ggttttgaac tcattaatat
     5161 agacatttgc gtcatggcac aaagccctaa acttaaagac tttaaacaag ctatgcaaag
     5221 caatatagct catactttag atttagatga atttagaatc aatgttaaag ccacaacaac
     5281 ggaaaaattg ggttttattg gaagaaaaga aggtatggcg gtgcttagta gtgtaaattt
     5341 aaaatatttt gattggacaa gattatgaaa gttttaatta ttgaaaatga aatttatcta
     5401 gcacaaagca ttagcattaa actaagtgat gctggatata gctgtgaaat tatcaactcg
     5461 tttgatgaat acaatggtga aaaatactat gatattgtac tgctttctac aaatactaat
     5521 aattttctaa aagccgtagg tcagtttaaa catagtatta ttattttgct tatttcttat
     5581 ataagtacag atacagtttc aaatcctttg aaattaggtg ctagtgatta tattcaaaaa
     5641 ccctttatga tagaagagct gattagaaaa ataaagcatt atcaggattt tagaaaactt
     5701 tcaatcctta ataaagctta tcaaagctac atcaaatcaa gattagaaac aatcaaaatt
     5761 ccagagtata attataaaaa attaaaactt ccattgatat taaaatccaa caagcaaagc
     5821 agtgctgatg cttttgtttt taattatgca aatgaatgtg acattactct ttcttttatt
     5881 gatttaacat ctacaaattc agttgaaaaa gttatgaaac ttcccacaga aaacaatctc
     5941 ttatttttga gtaattttca agcattaaaa gcaacagaaa aggaaaaact cctagatttt
     6001 atacaaaaca aaaatgttat tttgcatacc aattcaaata cagatgattt aaaaataaac
     6061 tgcattaatt taaatgataa tgaaaaaaat atcgatagca atgaaatttt
//
LOCUS       DAEBKH010000093         5997 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.093, whole genome shotgun sequence.
ACCESSION   DAEBKH010000093 DAEBKH010000000
VERSION     DAEBKH010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5997
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.093"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(203..1390)
                     /locus_tag="KIL20_001249"
     CDS             complement(203..1390)
                     /locus_tag="KIL20_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HBD2721272.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKVVKASGLVEKIGEQNSKVILKNV
                     LNNESFERELMINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANVAIFDTAFHRTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAFVSSRAASLLEKDKSELNVISAHLGNGASVCAIEKG
                     KSVDTSMGFTPLEGLVMGTRCGDLDPAILPFISHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFELNKQRISGERMINHANSKVKVLVIPTDEELEIARITEEL
                     ISN"
     gene            complement(1404..2909)
                     /gene="pta"
                     /locus_tag="KIL20_001250"
     CDS             complement(1404..2909)
                     /gene="pta"
                     /locus_tag="KIL20_001250"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HBD2721273.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLEEYDFITPHRFKYELIKQSVKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDAARLSLDLSTIQIMNPLNSEYNQEFTSILYEARKSKGMSLEEA
                     KMLVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPTAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            2999..3697
                     /gene="flgH"
                     /locus_tag="KIL20_001251"
     CDS             2999..3697
                     /gene="flgH"
                     /locus_tag="KIL20_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HBD2721274.1"
                     /translation="MKKVLFYVLPFAFFGCSATVDPQISMKPPAYVEELAPKQSNNVE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            complement(3727..4800)
                     /gene="ispG"
                     /locus_tag="KIL20_001252"
                     /gene_synonym="gcpE"
     CDS             complement(3727..4800)
                     /gene="ispG"
                     /locus_tag="KIL20_001252"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HBD2721275.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKERGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
     gene            4923..5447
                     /locus_tag="KIL20_001253"
     CDS             4923..5447
                     /locus_tag="KIL20_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HBD2721276.1"
                     /translation="MDFFKNGGVIWITGLAGSGKSYIAEALYKKLKEKYNNIIYLDGD
                     ELRDLLEHYGYDKQSRIDMSIKRSKFAHFLSSQNMLVIVSAISMWNEIYEHNKKTLKN
                     YFEIYIKCDFEELKKRDKKNLYSKNLKGEISNVVGMDIDFDEPKSNLIIDNTYMTELD
                     NKISYILTALKEKK"
     gene            5458..>5997
                     /locus_tag="KIL20_001254"
     CDS             5458..>5997
                     /locus_tag="KIL20_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein"
                     /protein_id="HBD2721277.1"
                     /translation="MQNLLLYIKNNLTPTLAQILLQALKNSNNEKFFTFVLKNIETIC
                     TWLNSSEFKNRYLSIKHPYPPLINPNFIEIDASRHCAELAWDLNLPLPKHYKFIYISP
                     HGVGAAAFLRYLNQCCDVTCFASWVLPPDAKERYCLNYMCLNDNTITQYAINISEINL
                     PYFDKYLSLLDFNSKIICGV"
BASE COUNT         2075 a         1093 c          791 g         2038 t
ORIGIN      
        1 atttagctta gaaggatcta caagcatacc gtcattaaaa agtgcatttg cctctaataa
       61 atccttcact aaaacaggtt gttctgatac tttaaataaa aaacgaaggc taaattcttt
      121 aaattttttc ataatccacg ctttattttt taattaaaat tttatctaaa caaaattaat
      181 ttttactaaa tataatcctc tttcaattgc ttattaattc ttctgtgatt ctggctattt
      241 ctaattcttc atctgtagga ataacaagca ctttaacttt agaatttgca tgatttatca
      301 ttctttcgcc cgaaatcctt tgtttgttaa gttcaaaatc taactcgata ccaagatgag
      361 ctaatctctc acatactttt tgtcgaacca aactatcatt ttctcctatg ccacctgtaa
      421 aaataatagc atcggttttt ggcaacacag caaagtagga tcctatatat ttaacaagac
      481 gataacaaaa catatcaaga gccaagcgtg ctttatcatt accttgttct atctctcttt
      541 ctatatctct aaaatcatta taaccgcaaa ttccatatac tccacttttt ttattcatca
      601 gtgtatctat ttcttctatg gttaaaccct taagatgact aataaaaggt aaaatagcag
      661 gatctaaatc tccacaacgc gttcccataa caagcccttc aagcggagta aatcccatag
      721 aagtatccac actcttacct ttttctatag cacatacact tgcaccattt ccaagatgag
      781 cagagataac atttagttca cttttatctt tttcaagcaa acttgccgct ctagaactga
      841 caaaagcatg agaagtccca tgaaaaccat atcttctaat attatgctta tcataaaaat
      901 cataaggcaa agcatacata taagcaaaat caggcatagt acgatgaaaa gctgtatcga
      961 aaatagccac atttgcaaca ctaggtgcag ctttaatcat tgtttttata cctgctaaat
     1021 gggcaggatt atgcaaagga gcaaaaatac taaccctatc tatctcttta agaacatagt
     1081 catctactaa acaatgctca cttaaatttc ttcccccgtg aactatacga tgaccacagc
     1141 catcaagagc atttaaatcc gctaaaattc ctgattcttt aaaaagctca ttgactatac
     1201 taagtccttc ttcgtgatta tttatcatta attctctttc aaaactttca ttatttaaaa
     1261 cattttttaa tataactttt gaattttgct ctccgatttt ctctactaaa ccactcgctt
     1321 taacgacttt attatcaaaa aatttaaatt taatcgatga agaacctgaa tttaaaacta
     1381 aaattttcat ttattattcc tttctattga gcttgtatag cacttaaaat aacagtatct
     1441 acaatatcat ctaccaaaca tccacgactt aaatcattaa caggtttttt aagaccttgc
     1501 aaaataggac cgattgctaa agcattagca gttctttgaa ctgctttgta acaaatattt
     1561 gctgcattaa gatcaggaaa aatatataca tttgcatggc ctgctatctt agaatttggc
     1621 attttctttg ctgcagtctt tggatcataa gcgcaatcaa actgcatagg accatctata
     1681 tttaactcag ggtatttttc tttagcaatc tttaatgctt cttttacaag atctacgctt
     1741 tctcccttac cgctatcacc actagaataa gaaagcaaag ctattcttgg ttcaagtcca
     1801 aaagatttag cagtcatagc acttacataa gcactagttg caagctgttc agcagttgga
     1861 cttggattta cagcacaatc agcaaaagct aaaacttgat cttcaagccc cataaagaaa
     1921 attcccgaaa cagaactaat accttctttg gttttaataa gctgcaatgc agggcgaatc
     1981 gtttcagccg tagtagttga tgctccacta accatagcat cagcttttcc agtatgtata
     2041 agcaaagttc caaaataagt tttatcctga actagcatct tagcctcttc taaactcatt
     2101 cctttagatt ttcttgcctc ataaagaatg gaagtaaatt cttgattata ttctgaattg
     2161 agcggattca taatttgtat agtacttaaa tcaagactta atctagcagc atcttgtttg
     2221 attttttcct catcacctaa taaaataaga tcaacaactt tactttttaa taaaatttca
     2281 gcagctttta aaattctctc atcattactt tctggcaaaa caacagtttt tttatttttt
     2341 acgctttgtt taatcaattc atatttaaaa cgatgtggag ttataaaatc atactcttca
     2401 agcttttgca cttcctcaaa attaaaattt tcattaatca aaacataatt acgaccatct
     2461 agggcatgat cgaaatattt ttgagctata agtttatcct catcgttaat aatagcagcg
     2521 ataggggtat taagattttt agccaatttt atactaagat caaatccatc aagtattcca
     2581 aattcgcaaa agctatttac aagcacaaaa tcgtatttgc gttttaactc ttcgtattct
     2641 tctaaaataa cattaaaaaa attatgagga tctttgctaa attcctccat tgcttctcta
     2701 aaggtaaaac cataagcgct ttttacagtt tgattgatat taaattcttc caaccaacct
     2761 tgcaaaacag ggacgcgatg tatgtatatt acagggcaat aaattgcgat atttttgtaa
     2821 attttgctat aatttttaag caaatttgta ctaataatag tatttaactc atcacttcta
     2881 gatctcatca aataaagatt tgccatcatt ttctccttga atttataaat gtggaacact
     2941 ctttgctttt tctaatttta acaaagaaaa ataaaaattc atattttaaa ggacgaaaat
     3001 gaaaaaagtt ttattttatg tgttaccgtt tgcgtttttt ggttgttctg caacggttga
     3061 tccgcaaatt tcaatgaaac cacctgctta tgtagaagaa cttgcaccaa aacaaagtaa
     3121 taatgtagaa agtgcaccag gatcgctttt tggcaaaggg gataatcctt tattttcaga
     3181 taaaaaagct atgaatgtaa atgatttagt tacagttgtt atacaagaaa gtaccactca
     3241 aagcacacaa gctaataaag caacaagtag aactaatacc tcaaatttag gcggaggtgc
     3301 tttaacagga agttcaggag tggtagctaa tgctcttaat aaagtcaatg cttattctaa
     3361 tataggcttt caaaccaata gttcaaacaa ctacacagga acaggctcac aaagcagaaa
     3421 tgaaagtttc aatactacaa tttcaacgcg tgtaattaaa attttatcaa atggtaatta
     3481 ttttatcgaa ggctcaagag agcttttaat caacggagag aaacaaatca tacaattaag
     3541 cggtgttatt cgtccttatg acatcggtca agacaatact atagatagta aatatatagc
     3601 agatgctaaa attctttata aaacagaagg tgaagtggat agaagcacaa gaaaaccttg
     3661 gggtagcaaa gttatagaag cgatatggcc attctaaaag caaggttaaa ccttgcttct
     3721 tggcttttat tcttttacag ccctactttt aacctcatct tcaacttcag ctaaaaatct
     3781 atctacaagt tcactttctt ttaatttagc tacaacttca ccatgtctta taacaagtcc
     3841 ttgatttttc ccaaaggcta tagccacatc agcgccctta gcttcaccta aagcatttac
     3901 tacacaaccc ataacactga tatttaaagg ttcttttata tgcttggttt tttcttctac
     3961 gattttaatc gcgcttaaca aatcactttg aatcctaccg caagttggac atgagatgat
     4021 atttactccg cttttttgca ctccactatc ttgcaaaatc gctcttgcta cacgaatttc
     4081 ctcttcaagc tcacccgtca tagaaacacg catagtatcg cctatacctt taagaagtaa
     4141 atttcctaaa gctatagaac tttttacagt gctatgaaat ttagttcctg cttcagttac
     4201 ccctaagtga aaaggataat cacaaagcgg tcttaatctc tcataagctt ctatagtttt
     4261 ttgagcatct gaagtcttca tggaaatttt aatatcaaaa aagtctaaat cctctaaaag
     4321 cttgatatta tacatcgcac tttctagcat agcatcgaca ccatagccaa atttatcact
     4381 aaattgtttt tctatggagc cgtgatttac accgatacgt atagggatac cccgttcttt
     4441 acatgctttt accacttctt tgatattttc tttagaacct atattgccag gatttatacg
     4501 cactccatcg ataaattcag cacaatatac agccaaatta tgattaaaat gaatatctac
     4561 gattaaaggt agaggacttt tagctttaat ctcttttaaa gcccttgcat cagccatatc
     4621 caagcacgcc aaacgcacta tgtttgctcc tgcaaaataa agacgattga tttgttctaa
     4681 agaaccttct atatctcttg ttttagtaaa aagcatagat tgaactgaaa tgggtgcatc
     4741 accgcctatt aaaacatttc ctactttgat ttgtctggtt ttaaatcttt tatactccat
     4801 aacttcactc tttgaaaaat tttaatatca aattttaact ttttattgct ttaattaaag
     4861 tttatttttg ataatatagg aaaaattttt acatttatac taaacaaaaa aggaggttat
     4921 ctatggattt ttttaaaaat ggtggagtta tttggattac aggactagca ggaagtggca
     4981 aaagttatat tgcagaagca ttatacaaaa aattaaaaga aaaatacaat aatattattt
     5041 atcttgatgg cgatgaactg agagatcttt tagagcatta tggatatgat aaacaaagtc
     5101 gtatcgatat gtcaataaag cgttctaaat ttgcacattt tctcagttct caaaatatgc
     5161 tagttatcgt aagcgctatt tccatgtgga atgaaattta cgaacacaat aaaaaaactt
     5221 taaaaaatta ctttgaaatt tacataaaat gcgattttga agaattaaaa aaacgtgata
     5281 aaaaaaactt atatagcaaa aacttaaaag gtgaaatttc aaatgttgtg ggaatggata
     5341 ttgattttga tgaaccaaaa tctaatttaa taattgataa tacttatatg acagaacttg
     5401 acaataaaat ttcctacatc ttaacagctc taaaagaaaa aaaataaaga aaaaagcatg
     5461 caaaatcttt tactctatat aaaaaataac ctaactccaa ccctagctca aattctttta
     5521 caagctttaa aaaattcgaa taatgaaaaa ttttttacct ttgttttgaa aaatattgaa
     5581 acaatttgca cttggctcaa ttctagcgaa tttaagaata gatatttatc aataaaacat
     5641 ccttatccac ctttaatcaa tcctaatttt atagaaatag atgctagtcg acattgtgca
     5701 gaattagctt gggatttaaa tttaccccta cctaaacact ataaatttat ctatatttct
     5761 ccacatggcg ttggagcagc agcattttta agatacctta atcaatgttg cgatgtaact
     5821 tgttttgcct cctgggtttt accacctgat gccaaagaaa gatattgtct taattacatg
     5881 tgtctaaatg acaatacgat tactcaatat gctattaata tatcagaaat taatctacct
     5941 tattttgata aatatctatc tttattggat tttaactcta aaattatttg cggagtt
//
LOCUS       DAEBKH010000094         5895 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.094, whole genome shotgun sequence.
ACCESSION   DAEBKH010000094 DAEBKH010000000
VERSION     DAEBKH010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5895
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.094"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            105..986
                     /gene="ppk2"
                     /locus_tag="KIL20_001255"
     CDS             105..986
                     /gene="ppk2"
                     /locus_tag="KIL20_001255"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HBD2721278.1"
                     /translation="MQENNSPKTQAVVKKNEIYVSVKRKKSTIEYEKDLKNLQIELLK
                     FQNHVKAKGLKVLILIEGRDAAGKGGAIKRLIEHLNPRGCRVVALEKPSDVEKTQWYF
                     QRYIAHLPSAGEIVIFDRSWYNRAGVEPVMGFCTPQQHKDFLREVPLFENMISNSDII
                     FFKFYFSVSKDEQKKRFEKRRSDPLKQYKLSPVDQKSQELWDKYTLAKYSMLLASNTP
                     TCPWTIISSDDKKKARLNLLRFILSKVEYPNKKTGDFSKIDAKLVRSGEEEIRKMEAN
                     LEKLDSKKADEKIKDLD"
     gene            995..2185
                     /locus_tag="KIL20_001256"
     CDS             995..2185
                     /locus_tag="KIL20_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HBD2721279.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILATIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGSLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMAT
                     QFVNNIQSVVSRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAALIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            2264..3436
                     /locus_tag="KIL20_001257"
     CDS             2264..3436
                     /locus_tag="KIL20_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HBD2721280.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIASKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVPNKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNENEELIVSSSADGLAPKVKLRF"
     gene            3436..5361
                     /locus_tag="KIL20_001258"
     CDS             3436..5361
                     /locus_tag="KIL20_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD2721281.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYIFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKKLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALMNGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNAQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLTLKTMSKEKKTLTLLKNQAFECFKIAYSSILAHKLRSVLTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGRGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRLYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            5363..>5895
                     /locus_tag="KIL20_001259"
     CDS             5363..>5895
                     /locus_tag="KIL20_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HBD2721282.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYK
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGGDKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLS"
BASE COUNT         2121 a          731 c         1145 g         1898 t
ORIGIN      
        1 aaatacgcat aaatttccta aaaacttatt ttttccttta tttttagctt caattataat
       61 ttattatggt aaatttgctt taaatacttt ataaaggttt gaaaatgcaa gaaaataatt
      121 ctccaaaaac gcaagcggtt gttaaaaaga atgaaattta tgtttctgtt aaaagaaaga
      181 aaagtacaat agaatatgaa aaagatttaa agaatttgca aattgagctt ttgaaatttc
      241 aaaatcatgt taaagccaag ggtttaaagg ttcttatact tatagaaggg cgtgatgcgg
      301 ctggaaaagg tggggcgatt aaacgtttga ttgagcattt aaatccgcgt ggttgccgcg
      361 ttgtggctct tgaaaaacct agtgatgtgg aaaaaacaca gtggtatttt cagcgttata
      421 tagcacattt gccctcggcc ggtgagattg tgatttttga cagatcttgg tataatcgtg
      481 caggagtaga accggttatg ggtttttgta caccgcaaca acataaagat tttttaagag
      541 aagtgccttt gtttgaaaat atgatttcaa atagtgatat tatttttttt aaattttatt
      601 tttcagtatc aaaagatgag caaaaaaaac gttttgaaaa acgccgaagc gatccgctta
      661 aacaatataa attatctcct gtggatcaaa aatcgcaaga attatgggat aaatatactt
      721 tagctaaata ctctatgctt ttagcatcta atactccaac ttgtccttgg actattattt
      781 cttctgatga taagaaaaaa gcaagattaa atttattgcg ttttatactt tctaaggtag
      841 aatatccaaa taaaaaaact ggagattttt ccaaaattga tgcaaaatta gtgcgtagtg
      901 gagaagaaga aatacgaaaa atggaggcga atttggaaaa acttgacagt aaaaaagcag
      961 atgagaaaat aaaagattta gattaaggaa aagaatgcaa aagctggttg aaaatttagc
     1021 actaaagtac tatgataaag tagttgattt aagacatcaa attcatatgc atcctgagct
     1081 tgaatttgaa gaagaaaata cagctcattt agtgtgtaaa attttagatg agtttggcat
     1141 taaatatcaa aaaaatattg caaaaacagg aattttagct actatagaag gaaaaaagaa
     1201 gagtcagaaa aaaccaaaat gcgttctttt aagagcggat atggatgctt tgcctgtaca
     1261 agaaaaaact aatctaagtt atgcttcaaa aattgatggt aagatgcacg catgtggaca
     1321 tgatggacat acagcaggac ttttgggagc tgctttgata ttaaatgagc tcaaagatga
     1381 attttgtggc acgattaaat ttatgtttca gcccgcagaa gagggaagcg gtggagctaa
     1441 acctatgata gaatcaggtg tattggaaaa tccttatgtt gatgcggttt ttggttgtca
     1501 tttatggggg tctttgcttg aaaatactgc tcaaattgta agtggcgaaa tgatggctgg
     1561 aacggatatt tttgatttgg aatttattgg cagaggagga catggagctc atccgcacac
     1621 ttgtatagat cctataatta tggcaacgca atttgtaaat aatatacaaa gtgttgtttc
     1681 taggcgttta gccccttatg aagcaggggt gattactgta ggtcaaattt gtgcaggaac
     1741 tacttataat gttattccta caaatgctta tttaaaagga accgtgcgtt ttttaaatga
     1801 taaaacacaa gatattttaa aaagttctct agaagaagtg gctgctgcta cagcaaaatc
     1861 taatggtgga gattataagc ttaaatatac taaagaattt cctccattga ttaatgatga
     1921 aaaagctgct ttaatagcaa gaaaagcttt tgcaaaggtc ttaggagaag aaaatatcat
     1981 tgtttcttct aaacctgaca tgggggctga agattttgct tttttaacac gagaaagaat
     2041 gggagcttat gtgtttgttg gaatttcaaa ggatttaaat catccagctt tgcatcatag
     2101 ttctactttt tgttgggatg atgaaaattt aaaagtctta atgcaaggtg atgtgatgat
     2161 ggctttagaa tttttaaatt tataaaatag aattaaaaat tcacaaaaaa ttcacaaaaa
     2221 atgagtaaaa tttaatcttg atttttcttt aggatttgtt attatgaaaa agaagattgt
     2281 tttaatcatt ttaattgcaa tacttggaag tgttggggct tattttattt tttttaataa
     2341 tgatgaaaaa atcagctatt taactcaaaa aatacaaaaa aaagatatat ctcaaaccat
     2401 agaggcagta ggaaaggtat atgccaaaga tcaagtcgat gtaggtgctc aagttagcgg
     2461 acaaattata aaactttatg tggatgtggg aactcatgta aagcaaggtg atttgatcgc
     2521 tcaaattgac aaagataaac aacaaaacga tttagatatt acaaaagctc agcttgaaag
     2581 tgctaaggct aatttagaga gtaaaaaagt tgctcttgag attgcgagta agcagtatca
     2641 aagagagcaa aaactttatg cagctaaagc aagttctctt gaaaatttag aaactcaaaa
     2701 aaataattat tatactttaa aagctaatgt tgcagagctt aatgctcaag tagttcagct
     2761 tgaaatcact cttaaaaatg cacaaaaaga tttaggttat acaaccatta ctgctcctat
     2821 ggatggtgtt gtgattaatg tagctgtaga tgaaggacaa acagttaatg ctaatcaaaa
     2881 cactcctact atagtccgta tagctaattt agacgaaatg gaagtaagaa tggaaatagc
     2941 agaggctgat gtgagtaaga taaaagtagg aacagagctt gatttttctt tacttaatga
     3001 tcctcaaaaa acttatcatg ctaagattgc aagtatagat ccagctgata ctgaagtgag
     3061 tgattctagt acaagctcaa gctcatcaag ttcaagttct tcaagctcaa gctcatcaaa
     3121 tgctatttat tattacgcaa aattttatgt acctaataaa gatgattttt tgcgtattgg
     3181 tatgagcata caaaatgaaa ttgttgtagc aagtgcaaag gctgttttag cagtgccaac
     3241 ttatgcaatt aaaagcgatc caaaaggcta ttatgttgaa attttagaaa atcaaaaagc
     3301 tgttaaaaaa tatgtcaaac ttggcattaa agattctatc aatactcaaa ttttagaagg
     3361 cgtaaatgaa aatgaagaat tgatagtaag ctcaagtgct gatggtttag ctcctaaagt
     3421 gaagttgaga ttttaatgat ttttcttaaa aatatttgca aaaatatagg cgaaaatgcc
     3481 attttaaaaa atgtaagttt aagtatagaa aaaggtgaat ttgttgccat tataggacaa
     3541 agtggaagtg gtaaaacttc acttttaaat atcataggaa cattagatac accaagtagt
     3601 ggaacttata tttttgatga atatgaagtc actaaactta ataatgatga aaaagcaaga
     3661 ttaaggcgtg aaaaaatagg ctttatattt caaagatata atcttttaag cttgcttagc
     3721 gctaaagaaa atgtttcttt acctgcagtt tatgcgggaa aaaaattaca agaaagaagt
     3781 caaaacgcta aaaaactttt aaatgattta gaactagctc ataagttaga ttctaaacca
     3841 aatgaattaa gcggaggaca gcaacaacgc gtttctatag caagagcttt gatgaatggt
     3901 ggagagctta ttttagctga tgagccaacg ggggctttgg atagtaaaag cggcattatg
     3961 gtgcttgaaa ttttacaaaa acttaacgca caaggccata ctatagtctt agtaactcac
     4021 gatccaaaaa ttgcagcaca agctaaaagg gttatagaga ttaaagatgg agaaatttta
     4081 agcgatacta aaaaggaaaa agctcaagaa aaactcactt taaaaacaat gtctaaagag
     4141 aaaaaaacac ttactttgct taaaaatcaa gcctttgagt gttttaagat agcttattct
     4201 tccatacttg cacacaaact tcgttctgtt ttaactatgc ttggaatcat cataggtatt
     4261 gcttctgtag tttgcgttgt agctttagga ttgggttctc aagctaaggt gcttgagtct
     4321 attgcaagac ttggaacaaa tactattgaa attcgtcctg gaaggggttt tggagatttg
     4381 cgttcaggta aaacaaggct taattttagt gatttagaaa cgctaagatc tttagaatat
     4441 ttagaagcag ttgatgctca ttcaaatact tcaggagtgg caacttatac caatatttct
     4501 ttaagtgcaa gagctgaagg agtgggggta aataattttg ctatagaagg tttaaggata
     4561 gatgcgggaa gaattttaaa taatgatgat gtaaaaaata gtaccaatgt tgctgtgcta
     4621 gattttaatg ctaaaaaaaa tctttttcct gatgaaaaaa gtgaaaatat tttaggtcgt
     4681 gtggtgcttt ttaattctca accttttaag attataggag ttttgcaaaa agatacagac
     4741 aagcctatag aagataatgt agtgcgtctt tatataccct atacaacact gatgaataag
     4801 cttacaggag atagaaattt gcgtgaaatc atagttaagg ttaaagatga tgtgagttca
     4861 actttggctg aaaatgctat cataagaatt ttagaaatta aacgcggaca aaaggatttt
     4921 tttactttta attctgacac ctttaagcaa gctattacag caaataaacg cactacaacg
     4981 atacttacag cttgtgtggc tgtgattgct ttgattgttg ggggtatagg agtgatgaat
     5041 atcatgcttg tttctgtaag tgaaagaaca agagaaatag gcatacgcat ggctataggg
     5101 gctagaagag aagatattat gatgcagttt ttaatcgaag cggttatgat ttgtactata
     5161 ggggcgattt taggtgtgat tttatcgatt tttgttattt ttgcttttaa tactttaagt
     5221 actgattttc ctatgatttt aaatgcttat tctgtgcttt tgggactttt aagttctatg
     5281 tttatcggtg tggtttttgg ttttttccct gcaagaaatg cagcaaattt aaatcctatt
     5341 agtgcattat caaaggaatg atatgaaaat aatacttagc atttttttag catttttctt
     5401 gagtgcttgt ggagtaaaac ttagcttgcc taaagaagtt gatttaactc aagaacaaat
     5461 gaaagattta aatctcactt atgattggta taaatcctat gataatgcaa aattaaatga
     5521 atttctaaat tttgttttat tgaataatag tgatattaat atagctagaa aaactttgct
     5581 ttcagctttg gctagagccg atttgattga ttatgattta tatccgactt taagtggaaa
     5641 tttgggtttt ggtggagata aagatttaaa ttcaggcaaa caaagtaaaa atttcaataa
     5701 ttctttaaat ttaagctatg agcttgatat ttatggaaaa ttaagagata gtgcaagtgc
     5761 gagtgaattt agtgcaaaag caagtgctta tgatcttgaa aatttaaaaa taagcatgat
     5821 caatacagct ttaaatgatg tttttgagct ggcttatttt aacgatgtag ataaattgct
     5881 tcgagcttat ctttc
//
LOCUS       DAEBKH010000095         5895 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.095, whole genome shotgun sequence.
ACCESSION   DAEBKH010000095 DAEBKH010000000
VERSION     DAEBKH010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5895
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.095"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..531)
                     /gene="ribA"
                     /locus_tag="KIL20_001260"
     CDS             complement(<1..531)
                     /gene="ribA"
                     /locus_tag="KIL20_001260"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HBD2721283.1"
                     /translation="MKIKISEIANLPSKWGNFQIQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLESIKEKIITR
                     IPILIEPNRFNVEYLNI"
     gene            588..1571
                     /gene="hemB"
                     /locus_tag="KIL20_001261"
     CDS             588..1571
                     /gene="hemB"
                     /locus_tag="KIL20_001261"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HBD2721284.1"
                     /translation="MFKRFRRLRLNENLRAMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDKGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKTKSVDNDATLEISAKQALVHARAGV
                     DMIAPSGMMDGIITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETMIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            1568..2488
                     /gene="argF"
                     /locus_tag="KIL20_001262"
     CDS             1568..2488
                     /gene="argF"
                     /locus_tag="KIL20_001262"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HBD2721285.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGTMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSEFYHPTQVLGDLLTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIVAAILGFEFSIAIPKNYKISPEIWEFAMKQALISGAKISLSHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            2485..2976
                     /locus_tag="KIL20_001263"
     CDS             2485..2976
                     /locus_tag="KIL20_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HBD2721286.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSENENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            2963..4318
                     /gene="hemN"
                     /locus_tag="KIL20_001264"
     CDS             2963..4318
                     /gene="hemN"
                     /locus_tag="KIL20_001264"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HBD2721287.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNTNFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILNTILDTKREVVQM
                     HFGGGTPTFFSAKQLQNLILKIRSVFGNFSKDAEISCEIDPRFLNEEQATVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQPFELTQNALNLVRSKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGVGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            4320..5585
                     /locus_tag="KIL20_001265"
     CDS             4320..5585
                     /locus_tag="KIL20_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HBD2721288.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKIAKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKIEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKFNYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVSMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFVSPLELIAKAL"
     gene            5582..>5895
                     /locus_tag="KIL20_001266"
     CDS             5582..>5895
                     /locus_tag="KIL20_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721289.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDTEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     II"
BASE COUNT         2109 a          711 c         1138 g         1937 t
ORIGIN      
        1 tatgtttaaa tactctacat taaaacgatt aggttctatt aaaatcggta tgcgtgtgat
       61 gattttttcc ttaatggact ctagtttctc gggattattt gtgagtaaat taaccttaga
      121 aatttcatag tgtttgagta taaattctac aatttcataa gttctctcat cggctttaaa
      181 gccaagctga tgatttgctt taatcgtatc aaaaccttta tcttgtaaag cataagcatt
      241 aaccttgtta aaaagcccta taccccttcc ttcttgccta agataaatca ccattccgcc
      301 attcttttct atatatttta gtgaaaattc aagctgttcc ccacaatcac actttaaact
      361 tcctaaagca tctcctgtta agcactctga atgaattctt agattgagtg tgtcttttgg
      421 agtattttta aatatacata aatgttcttt atcattttct ttgaaacttt gtatttggaa
      481 atttccccat ttgctaggca aattcgcaat ttctgaaatt tttattttca tttactactc
      541 tctataatca aatttatgtt aagattttag caaaaaaagg acaaaaaatg tttaaaagat
      601 ttagaagatt aaggcttaat gaaaacttaa gagccatggt aagggaaaat tctttaagtg
      661 taaatgattt gatttatccg ctttttgtgg ttaatggaac ggggataaaa aaagaaattt
      721 cttctatgcc tgatgtgttt caaatgagtt tagatgaaat tttaaaagag tgtcaaaatg
      781 tagttaattt aggcattaaa gccattatac tttttggcgt tttggaaaat gagaaaaaag
      841 acagctgtgg aagcgatgct ttagatgata aagggcttgt tgcaagaagt ataagagaga
      901 ttaagaaaaa ttttccagat ctttttataa tcagcgatct ttgtttttgt gaatacacag
      961 atcacgggca ttgtgggatt atcgatccaa aaacaaaaag cgtggataat gatgcaactt
     1021 tagaaatttc agccaagcaa gccttagttc atgcaagagc aggggtagat atgatagcac
     1081 ctagtggaat gatggatggt attatcacta ctttgcgcaa agctttagat aaggaaggtt
     1141 ttgaaaattt gcctataatg gcgtattcta ctaaatttgc ttcaagttat tatggtccat
     1201 ttcgagatgt agcagaatca gctccaagtt atggagatag aaaaagctat caaatggatt
     1261 ttgctaatgg taaagaagct ttagaagaaa gcttagaaga tgaagcgcaa ggagctgata
     1321 ttttgatggt aaaacccgct cttgcttatc ttgatgtggt taaagaaata tcccttcatt
     1381 ctaacttgcc tttgtgtgtt tataatgtaa gcggagagta tgctatgtta aaggcagcta
     1441 aaaatgctgg agtgattgat tatgaaaaag ttttatatga aactatgata gcttttaaaa
     1501 gagcaggagc aaagcttatc atcacttatc atgccaaaga attagctaaa atgttaaaag
     1561 gagaaaaatg aaacattttt taactttaag agatttttcc aaggaagaaa ttttaagtct
     1621 tgtaaatcac gctagtgagc ttaaaaaaga gcctaaaaaa cttttacaag ataaaacttt
     1681 ggcaatgatt tttgagaaaa actctacaag aacaagaatg gcttttgaat tagcaataac
     1741 agagcttggc ggaaaggctt tgtttttaag cagtaatgat ttacaactta gtcgtggcga
     1801 gcctgtaaag gatacagcta gggtgatagg aacgatggtt gattttgtaa tgatgagagt
     1861 caataaacac gaaactttac tcgaatttgc aagatactcc aaagctcctg tgatcaatgc
     1921 tttaagtgag ttttatcacc ctactcaggt tttaggagat ttgcttacta ttaaagaatg
     1981 gaataaaatg caaaatggta tagcaaaagt tgcttttatc ggagatagta acaatatgtg
     2041 caattcttgg cttattgtgg ctgcgatttt gggctttgaa tttagtatag ctataccaaa
     2101 aaactataaa attagccctg aaatttggga atttgctatg aaacaggctt tgatttcagg
     2161 agctaaaatt tccttaagtc atgataaatt tgaagcctta aaggataaag atgtagtcat
     2221 taccgatact tgggtttcta tgggtgaaga gaatgaaaaa gaacgcaaga ttaaagaatt
     2281 tgaaggattt atgattgatg aaaaggctat gagcgttgcc aataaagacg cgatattgct
     2341 tcattgtttg cctgcttata ggggttatga agtgagtgaa gaaatttttg aaaaacatgc
     2401 agatgtgatt tttgaagaag caagaaatcg cctttatgtg gtaaaagcct tgctttgctt
     2461 tttggataat cagagaggaa gagaatgaaa gagctagaaa agtatagcac ttgcttaaaa
     2521 cgcattgatg aatttagtca aaatctagga ataaagaaaa aagatagaac gatttttaaa
     2581 atgaagcaaa gcgagaatga aaacgaaaaa tgtttagttc ttgaaaatgg aagttttgat
     2641 tctcctgagc cttggtttgt gatcgatgaa aacgatgaaa ttcacacttt gctttcttta
     2701 caaagtctta agaatatact tgaaagttta aaacaaagtc aaaaagagaa ttttgaattg
     2761 cgtttagaaa aggcgattta tcaacaaatt cctgtagatt ttaacgatgt ttggacggtt
     2821 gccatggatg agatcaagca aaaggcacaa aatggcacca tggaagttag tattgatctt
     2881 gaaaaattaa tttctaaaat caaacaagag catccaaatt tatttgtaga tatgcaagcg
     2941 atgatagaaa gggtaaatca aaatgagaga ttataaagct tttgtaaaat actctaaagc
     3001 aggaccacgt tatacttctt atcctacagc agtagagttt aatacaaatt tcaaatacga
     3061 agaatatata gaaattttaa aaaagcaaga tagatcttta tcgctttatt ttcatttacc
     3121 attttgtagg agtgcctgtt atttttgtgg ttgcaatgtt atttatacag ccaaagaaga
     3181 gagtaaagaa aggtatttaa cttatatttt taaagagctt gatattttaa atactatttt
     3241 agatactaaa agagaagtag tgcaaatgca ctttgggggc ggaactccaa ctttttttag
     3301 tgctaaacaa cttcaaaatt tgattttaaa aatcagatct gtttttggaa atttttctaa
     3361 agatgcagag attagctgtg agatcgatcc gcgtttttta aatgaggaac aagccacagt
     3421 tttaacgcaa aatggcttta atcgtatcag ctttggagtg caggattttg atgaaaaagt
     3481 tcaaaaagaa attcatcgca tccagccttt tgaattaaca caaaatgctt taaatcttgt
     3541 aagaagtaaa ggcataaagt ctgtaaatat ggatttaatt tatggtttgc cttatcaaaa
     3601 tttacaaagc tttacacaaa ctttagaaaa agttatgctt ttaaaccctg atcgtttggc
     3661 gatttttaat tacgctcatg tgccttggct taagaaaaat atgagaaaat ttgatgaaaa
     3721 taccttgcca agtcctgatg ttaagcttga aattttagaa ttttgtgaga aatttttaag
     3781 caaaaatggc tataaaatga taggaatgga tcattttgca aaagaaaatg atgagctttt
     3841 taaagcttta gaaaatggaa ctttgcatag aaatttccaa ggttatacta ctaaaggcgg
     3901 tgctgattta gtcggtgttg ggcttacaag tataggtgaa ggacaaagac attatgcgca
     3961 aaattttaaa gatatgtcaa gttatgaagc tgcattagat agaggagttt taccttttga
     4021 aagaggcgta gctttaagcg atgatgatga gcttagaaaa gcagtgatta tggagttaat
     4081 ggcaaatttt aagcttgata ttaagtcaat agaaaaagaa ttttgcattg attttcagga
     4141 gtattttaaa gaggatttaa aagctttaga agaatacaaa gattttatta attttgatga
     4201 aaattttatc aaagtcaatg aaacaggtgt tttgcttata agaaatattg ctatgtgttt
     4261 tgatgcttat atgaaaaaca ttagtgaaga taaaaaagta ttctcaaaaa cggtgtaaga
     4321 tgaaatttag tcaaataagt gatgcttgtg ttaaatgtgg caaatgtata cctgtttgta
     4381 ctatacatga agaaaatcgc gatgaaatta ctagtccaag agggttttta gatcttttag
     4441 ctgcttataa agagggaagt ctagaacttg ataaagaagc taagaaagtt tttgaatctt
     4501 gttttttatg caccaattgt gttgaagtat gtccaagtaa attaagagta gataatgcca
     4561 tagaagaagt tcgttatgat atagctaaaa aatttggtat agcttggtat aaaaaactta
     4621 tttttttctt tttaagaaga cgcaaaattt tagatttggt agctaagctt ggctatgtgt
     4681 ttcaaagttg tgcgtttaaa attcaaaatg agaatgaaaa tacaggtatg aaggcaagat
     4741 tttccatgcc ttttgttaaa aagggaagat tacttacaag ttttaataaa aaaagtttct
     4801 taaattctaa tccaaaattt atcaataatg atggagaaaa aaccataggt ttttttgtag
     4861 gttgtttggc gaattatttt tacatagata cggctaatgc agtgcttaaa atcgctaagg
     4921 aattaaaaat caatgtggat ttgatgaaag aacaagtgtg ttgtggagcg ccgcaatttt
     4981 ttacgggtga ttttaaaagt gttgaagttt tggctaaaaa aaatattgag tattttgaaa
     5041 aaaaaataga aaaattagat gctattatag ttcctgaggc cacttgttcg gctatgttaa
     5101 agatagatta tgaacatttt tttataatgc aaaatgattt agactgggca aaacgcgcaa
     5161 aatgtgtgtc atctaagata tatatggcta gcgagtattt ttataaattt acttctttgg
     5221 aagaaatttt aaaaacaaaa aataaattta attatagtat tacttatcac gatccttgcc
     5281 atgcaagaaa aatgcaagga gtttttaaag agccaagaga acttttaaaa acaaattatc
     5341 attttgtaga aatgagtaat tctaatactt gttgcggttt tggcggggtg agtatgcaaa
     5401 cggattatta tgatagagct ttaagtgtag ggcttaaaaa agcacaaatg atcgatgaaa
     5461 gtaaggctag tgtggtaagc gccgagtgtt cagcttgcag aatgcaaatt tcaaatgcat
     5521 tagaacaaaa ttcaagcaag gttgtttttg ttagtccttt agaacttata gcaaaagctt
     5581 tgtgatgatg aagatagtat ttaaaggcaa aagttctgaa tacgaaattc aaagatcgtg
     5641 cttttgtgtt gatgcttttg tgattaaaga taagattgaa gaacgagatg gcgttgattt
     5701 tatcacttca aatgtagatc ttttggaatt tagtgatgac agttttactt ttgaagaaat
     5761 tgtaaaacat tttaatattt gtgatactga agatatgatt atcgttgaag attttgacat
     5821 gaaatcaaac aaagataatc aaaaccaaga agatgatata gaacacaaca tcttaaaatc
     5881 cgaaaaaata ataca
//
LOCUS       DAEBKH010000096         5850 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.096, whole genome shotgun sequence.
ACCESSION   DAEBKH010000096 DAEBKH010000000
VERSION     DAEBKH010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5850
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.096"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            14..778
                     /locus_tag="KIL20_001267"
     CDS             14..778
                     /locus_tag="KIL20_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HBD2721290.1"
                     /translation="MKVKWSRDFSIKNMQLDKQHELIFEITNLANDLALNIQDNNTQH
                     KNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSNDI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKTLHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTHDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     TFEDALQNHHFTTQKNDMGGGIDEFSSKNLRNFQSF"
     gene            735..2606
                     /locus_tag="KIL20_001268"
     CDS             735..2606
                     /locus_tag="KIL20_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HBD2721291.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCIANNLKLSQIGLKTTGSIKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPSAIEMKFSNLY
                     HDIIKKYNHLSISYKKLVKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(2610..4247)
                     /locus_tag="KIL20_001269"
     CDS             complement(2610..4247)
                     /locus_tag="KIL20_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HBD2721292.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKEGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(4251..5135)
                     /locus_tag="KIL20_001270"
     CDS             complement(4251..5135)
                     /locus_tag="KIL20_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HBD2721293.1"
                     /translation="MISSSDWNLNTAATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            complement(5189..>5850)
                     /locus_tag="KIL20_001271"
     CDS             complement(5189..>5850)
                     /locus_tag="KIL20_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HBD2721294.1"
                     /translation="PKNNNKENKDIKQNFFDQKLNFENLNKTQVVQNKENNANFNNNT
                     TNKETFTQEQIKTHSENVDKNSLDELNSLVKDLNKVTQNNARNITPKETLQYFSQDLK
                     EAVDQYKAPITKLSITLNPNNLGEVEVTLIQRGNNLHINFNSNANAMNLFIQNQAEFK
                     NSLVNMGFTGLEMNFSDQGKREQNQNQGKNRSGYGFKDALDGKNESEKVNLELVLAKY
                     F"
BASE COUNT         2104 a          981 c          787 g         1978 t
ORIGIN      
        1 gcaaggaaaa aatatgaaag ttaaatggag tagagatttt agcattaaaa atatgcaatt
       61 agacaaacaa cacgaactaa tttttgaaat taccaatctt gcaaatgatt tagctctaaa
      121 cattcaagat aataatacac aacacaaaaa tgatttaaaa caaattcttg taaagctatt
      181 tcaatacatc aaaattcatt ttaaagatga agaaaaattt atggaaagca ttgattttcc
      241 tttgattgaa gaacataaaa aatctcatca aatattagta gaaaaaacta aagagctttt
      301 agaacactca aatgatattg taaaaatgtc tcaagaactt tccatattaa ccaaagattg
      361 gattttagat cattttgcta atgaagattt atggatagct aattttacaa aaaaaaccct
      421 acaccttcaa gaaatccatt ataccttaga acaatacata aaactaaaat caatcaaaca
      481 agacctaagg gctgaaaaaa ctcatgatta tatttgcaat tgttctttgc gtatccatgc
      541 agttccacag actatacatc aagagcttgt tagcaaagaa aataccttaa agtgcgaaaa
      601 atgtgggcaa attttagttc atttggatta ttttgatttg aatcaaaatt tcgaaaaatt
      661 caatgctact tttgaagatg cactacaaaa tcaccatttc acgactcaaa aaaatgatat
      721 gggggggggg atagatgaat tttcaagtaa aaaccttaga aactttcaat ccttttgaaa
      781 gtttaaatca tgaacaagca aacacagaac aaattcttga ttttagagtt atagatttta
      841 aacttctgtg ttctagtgta aaaccagcaa aaacaaaaac ttatgaaaga aaggattttg
      901 acttatttta tgcagatgat ttttttgtaa aaaactacaa taccatagtg caaaaatttc
      961 ttatagaaat ttacccaaaa acccaaagtt ttccttttac agtcaaactt agatccaact
     1021 ccaacctaac ccatctaaaa gccagtatca accttacaga aaattttaaa tattacccta
     1081 atttaaaatt tgatattttg caaaatatct acaaaataat gatcaaacaa aaatttttaa
     1141 tcttaagact tgataaaaat ttatttgaca agattgatga ttttatctta tcaatacaaa
     1201 aaagtccatc tattaaagaa atagagcttg aaattgccaa aggtgtagat aagattgaac
     1261 ataaaagtga tgaaattatt tatcatagag atgttaacga agaatgtttt gacgaaaata
     1321 ttaactatga tgaaggaaac tactgtaaac ctattgaaaa aaatgagcta ctttttgaat
     1381 acatttatag aattcttgga aaagaaggac gaaatttaag aggagagata cttcatttaa
     1441 atccaatagc ctttcttgat aatcctttta tcataaaaga tgaaagcatt tacacagaag
     1501 aattagaaga tagaattaaa tattttagcg ccaattatgg atttttaaac aaagatcata
     1561 caggatattg tatcgcaaat aatttaaaat tatcacaaat agggcttaaa acaaccggtt
     1621 caatcaaaac aaataccgat gaaaatataa acttagaaat cactaatttt gatataagtg
     1681 atgatgctat taaatcaggt attgtaaatg ttcaagcttc aaatataaaa gtaaatggga
     1741 atgttggagc aacaaaactt tatggaaaaa atatcagtat caaaggctta actcatgcaa
     1801 aaagcgaaat ttttgcacaa gatattttta ttacaacaca caaaggaact ttgcaagctg
     1861 acactgtata tataaaaaat ttagaaaatg ggacaattat agctaaaaat gtatttgttg
     1921 aaaactgcat gggtggaaaa atagaagcag aaaatattta tatttgcaat ttactaacgg
     1981 ataatacttt atatccaaga aaaaatctaa tcataacaaa caatataaaa ttcaaaaaca
     2041 atatcgtagt ttcaccacta gtttctattg aaaacaactc agatacagaa tgcgaaaatc
     2101 ttaaaaatct aagccttaaa ataaaaagta agcttgatga caccataagc aaaatgcaaa
     2161 attactatga ttatctaatc aaaaatcaaa tcaaaatcat caaacttcaa aagactaaaa
     2221 atcctagcgc catagaaatg aaattttcaa atctttatca cgatatcata aaaaaataca
     2281 atcatcttag catttcgtat aaaaaacttg taaaattaaa atatcaaatt gatgcgaaat
     2341 taaatttctt aaatgaaatg gtttacaatg taaaaatata cataaaagcc gaaaatatcg
     2401 gagaggataa ttttttaaaa ttttatccta acacaaacac caaccttgaa ctaaaacatc
     2461 atataaattt aaaagactat gaaaaggttt tatatcttga aaaaggacag caagtaagtt
     2521 atattaaatc aagccataat tatagcgaaa gcgacataga agaaattaaa attatttttg
     2581 aaaaattaga aaaagataat tcctaagaat tatcttttca tattaatggc tttttgtatc
     2641 atctgatcac ttgtagtgat actttttgag cttgcatcaa aggctttttg agttacgata
     2701 aggtttgaaa gctctgcgct taaatcaaca tttgattgtt ctaagaatcc gcctttaaat
     2761 ttagctgtat taacaacttg accatctttc ataataaaac ttgcatcacc gctatttgcc
     2821 gttgctgcaa aaatattatc tcccatagca actaatcctt gctcattgat aaaattatat
     2881 aaagcaagct ttccaactat ggcattttta ccattgctaa attgcgcaac aatacttcca
     2941 tcatcggata tattatattg ttcaaaaaac ccttcagcta caccatcttg ttgtgtaact
     3001 acattttttt cgacgccttc tttaatataa atcccactat aacccgaacc aggcttgtta
     3061 gcatcataag gagaacctaa atcaatatta attgttccac catttggatt tgcaatgctt
     3121 gtaatattgt tttgaagcaa agcaccattt ttatcaaaaa ccatatttcc ttcagtcgga
     3181 ttgcctacgg cattgccatt agaatcataa atttgtgcaa tagctttata ttgtatatta
     3241 tcgccttctt gcggtaaaac tctttcaagt gtaaccctta aagtgctttt acttccatct
     3301 gcattataaa taggggattc taaaatatct ttattggctt tttgttgctc tgttgaaatt
     3361 tgagctgtat caagcttgat gctattttca tccaatcctt ttaaatcaag ctcgttactt
     3421 ttaaaattta gattttcatc taaagtcgct tcaaagcttg tttttacgcc attatcatca
     3481 gtgaaattta aaataatcct atcacccgct ttagcactaa acacatcttc tttgctaaca
     3541 ctaccactaa ctacatattt tccatcttca gtttttgtaa tgttaaattt actaggatca
     3601 agatctactt taactacttc tgttgttgtg ttagtattta aacttccact ccattttaca
     3661 ttttgagtta cttgaggagg taaatacata ttcacaggta ctttaatagc cccttgagaa
     3721 gcggttgtgc ctatactgaa agaattattt gaatttacag taaaaccatt atttaccgga
     3781 gttcctgtgt taagataatc ccccataagc ccagcaactc tatcgctata gttaatacca
     3841 gtaaaagcag gattcattgt tcctaaaaca aaatttccat aagaatctac caaatatcca
     3901 ttggcatctc ttctaaatga tccatttcta gtatagtaag cattgccatc agcccctaaa
     3961 accccaaaaa atccttttcc ttgcaaagcc acatcaaatt cgccatcact tgcaacagga
     4021 gaaccctgtt cgaaaacaac ttgagaagat gctgcaccgc taccataacc accttgagca
     4081 gggttggttg attgggttgt tatggtagta taaaaaatat ctttaaattg agcatcagag
     4141 tatttaaagc ccgtggtatt gacatttgct atgttattag cagtgatatc aataccaaag
     4201 ctattgcttt ttactccaga aatcccatta taaaatgaat tcatcatggc ttatgccttt
     4261 tcctctttgt cgccatcttc tgtagatcca gacccagaag aatctccatc gcttgaacca
     4321 ccacttgagt ctccacttga accgcttcct ccagtagatg aagatgaacc aagcttataa
     4381 tctgttattt cttgtattgc atcaaaagga acttcttgtc cagccatttt tgcataggca
     4441 acaccatctt taaaaacaac accttcgata ggataagttc cgtaatttgc agtgattttt
     4501 tcaccatttt tattattata aaccatttta acagtgtact caccatcacc tgcataaacc
     4561 ccatcgttat ttcttcctgg ccactccata gtaaataaac cttgagaaat agatttagca
     4621 tcgctttttt cactgaaaac aagtttatta ttgctatcat aaatttctag cgtaacaccg
     4681 ttttcatcag aatcttcagg caaatacatt ttaagagcga taagctcatc tgcacctgta
     4741 agtttgattt tattatctga aacagttgcc attttaccaa tagcccctaa agctgaagta
     4801 ctcatacttg tactaaaaga atcagaaagc ttttgcatag tttcaaccat tttttgcata
     4861 gttgtattgg tattttgctg catttcaagt gcgctaagct gcgaagtttg agtaagcatt
     4921 ttatcgctat ccataggatc tgttggatct tgatgttgaa gctctatcaa aagaagtttt
     4981 aaaaacgcat ccttatctaa ggtagcgttt ggattgctca ctattcctga gctactgctt
     5041 gaatctgttc tagttgttcc actagtactt cctgaagaag tagtacctga agttgtagca
     5101 gcagtattta aattccaatc cgatgatgat atcattataa actccttttt atttagtttt
     5161 ttattattta agcaataagt gttccaactt agaaatactt cgctaaaaca agctctagat
     5221 tgactttttc actttcattt tttccatcta aagcatcttt aaaaccatat ccactacgat
     5281 tttttccttg attttgattt tgctctcttt tgccttgatc actaaaattc atttcaagtc
     5341 cagtaaatcc catatttaca agagaatttt taaactcggc ttgattttgg ataaacaaat
     5401 tcattgcatt ggcattggag ttgaaattga tatgaaggtt attacctctt tgtatcaaag
     5461 ttacctccac ttctccaaga ttattaggat ttagagtgat actaagttta gtaataggcg
     5521 ctttgtattg atccacagcc tcttttaaat cttgtgaaaa atactgcaaa gtttctttag
     5581 gagtgatatt gcgagcattg ttttgtgtta ctttatttaa atctttaact aaagaattta
     5641 actcatctaa gctattttta tctacatttt cactgtgcgt ttttatttgc tcttgagtaa
     5701 aagtttcttt attagtagta ttattattaa aatttgcatt attctctttg ttttgaacta
     5761 cttgagtttt atttaaattt tcaaaattta atttttgatc aaagaaattt tgttttatat
     5821 ctttattttc tttgttgttg tttttaggct
//
LOCUS       DAEBKH010000097         5847 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.097, whole genome shotgun sequence.
ACCESSION   DAEBKH010000097 DAEBKH010000000
VERSION     DAEBKH010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5847
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.097"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            166..669
                     /locus_tag="KIL20_001272"
     CDS             166..669
                     /locus_tag="KIL20_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721295.1"
                     /translation="MYHLLDFSTCKCENEKFDLAYKIFKQDFIEVPLYLAGCIYIDPQ
                     SHKKHKGKEKIFWHITTRENKQNKTREFDSQRACRINWIKQIIINHTHPEIKAFYYKE
                     KRAIRFYLWLYNHNFIVILQKLGRSSSFLVTSFYIDKGYNKNIYEKRYRNYINGNDIE
                     LKNCEWF"
     gene            795..2240
                     /locus_tag="KIL20_001273"
     CDS             795..2240
                     /locus_tag="KIL20_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HBD2721296.1"
                     /translation="MNLNQTLQEKYPHLEVSVLKLSEVKKNIDFRIDDSFWTMKLIYN
                     NKLNYKKIGECLLKSQYGISINMNEEGDGIPIYRMNDIDNMLCNFEVKKYALIDKNEL
                     QTFRLNYGDVLFNRTNSYEFVGRTGIFYNNRENFVFASYLVRLVCNKEILLPEYLTVF
                     LNTHIGKKEIRRRARPSINQANVNPEELKEIKIPIFPMEFQLEIQNLVKDSHKALEES
                     KELYKKAEETLYLELGLDPKNPLQSLLDSKTNNPTKSLNISIHTLKESFLKTGRLDSE
                     YYQSKYEDIEKMIRSYKDGFCNLKDLVNDISSGFAFSSDDYQDVGELVLIRINNIKNA
                     TLDLSNVIYLKNEAYNLSPKDKIKKGDILISMSGSIGLSCVVRDDISAMVNQRILKIS
                     IKNFNSDVLVLLLNSFICKMQFERIGTTGGVQTNLSSIDMQNILIPKIDSTTQEKIAK
                     YIQESFNLRKKSKQLLDNAKIKVEEQIQGKI"
     gene            2237..2428
                     /gene="thiS"
                     /locus_tag="KIL20_001274"
     CDS             2237..2428
                     /gene="thiS"
                     /locus_tag="KIL20_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HBD2721297.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGLKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            2425..3228
                     /gene="thiF"
                     /locus_tag="KIL20_001275"
     CDS             2425..3228
                     /gene="thiF"
                     /locus_tag="KIL20_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HBD2721298.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLESLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDGILICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKVGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            3231..4007
                     /locus_tag="KIL20_001276"
     CDS             3231..4007
                     /locus_tag="KIL20_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HBD2721299.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKTQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDV
                     ALMAKAFSLAVNAGRAAFLAGLASVSKAKASSPLTGFLRD"
     gene            4010..5155
                     /gene="thiH"
                     /locus_tag="KIL20_001277"
     CDS             4010..5155
                     /gene="thiH"
                     /locus_tag="KIL20_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HBD2721300.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLTQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLSEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNALKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFGALLGIDDFRKDALATALHAHFLQQAYPHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            5145..5750
                     /locus_tag="KIL20_001278"
     CDS             5145..5750
                     /locus_tag="KIL20_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HBD2721301.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICVKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLIKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKVGLEPKGIDFLKSLLEFSQIPLYAIGG
                     INTQNIENFKDINIAGVCMREILMKEKDLKKYLLECRQNLR"
     gene            5747..>5847
                     /locus_tag="KIL20_001279"
     CDS             5747..>5847
                     /locus_tag="KIL20_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HBD2721302.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQT"
BASE COUNT         2167 a          708 c         1129 g         1843 t
ORIGIN      
        1 tatttcatac aaagcaagaa atgatataga gcatgtaagc gaaataaaaa attatattat
       61 aaataaaatt gaaacattgg caaatattga attggatgca ggaacgccac cttgggaaaa
      121 taaatttaat atttttagga ttcaattgag taaaggtgaa caataatgta tcacctcttg
      181 gattttagca cttgtaaatg tgaaaatgaa aaatttgact tagcttataa aattttcaaa
      241 caagacttta ttgaggttcc attgtattta gcaggttgta tttatataga tccgcaatca
      301 cataagaagc ataaggggaa agaaaagata ttttggcata tcacaacacg agaaaacaaa
      361 caaaataaaa caagggagtt tgatagccaa agagcttgca gaataaattg gattaaacaa
      421 attattatca atcatactca tcccgaaatt aaagcttttt attataaaga gaaacgggca
      481 atccgttttt atttgtggtt atataaccat aattttatag ttattttaca aaagctaggc
      541 agaagtagtt catttttagt gacaagtttc tacatagata aaggatataa taaaaatatt
      601 tatgaaaaaa gatatagaaa ttatataaac ggaaatgata tagagctaaa gaattgcgaa
      661 tggttttagg ggtttggtgc agatttaggc atctgcaaga agcataaaag ctagccatct
      721 ctttctacca ccggtagttg agctttataa ttataaatat tttttactta gattgaaata
      781 aaaaaaggaa taaaatgaat ctaaaccaaa ctttgcagga aaaatatcca catttagaag
      841 taagtgtatt aaagcttagt gaagtgaaaa aaaatataga ttttcgcata gatgatagtt
      901 tttggacaat gaagcttatt tataacaata agttgaacta taaaaaaata ggagaatgtt
      961 tattaaaatc tcaatatggt atttcaataa atatgaatga agagggcgat ggtatcccta
     1021 tttatagaat gaatgacatt gataatatgc tttgtaattt tgaagtcaaa aaatatgctt
     1081 taattgataa aaatgaattg caaactttta ggttaaatta tggagatgtt ttgtttaata
     1141 gaacaaattc ctatgagttt gtgggcagaa caggaatttt ttataacaat agagaaaact
     1201 ttgtttttgc ttcatattta gtaaggcttg tttgcaataa ggaaattctg ttgccagagt
     1261 atcttacagt ttttttaaat acgcatattg gtaaaaaaga gataagaaga agggctagac
     1321 catcaattaa tcaagctaat gtaaatcctg aagaattaaa agaaattaaa attcccattt
     1381 tccctatgga atttcagtta gaaattcaaa atttggtaaa agattctcat aaggcattag
     1441 aagaaagtaa ggagttatat aaaaaagcag aggaaacttt ataccttgag ttaggacttg
     1501 atccaaagaa tccattgcaa agtttgctag attctaaaac aaataatcct acaaaatcac
     1561 tcaatatctc tatacacaca ttaaaagaat cttttctaaa aacaggaaga ttggattctg
     1621 aatattatca aagtaaatat gaagacatag aaaagatgat tagaagttat aaagatggct
     1681 tttgtaattt aaaagattta gttaatgata tttcaagtgg ttttgcattt tcaagtgatg
     1741 actaccaaga tgttggagag cttgtattaa ttaggattaa taatataaaa aatgctacgc
     1801 tagatttaag caatgttatc tatcttaaaa atgaagctta taatttaagc cctaaagata
     1861 aaataaaaaa aggtgatatt ttaatttcta tgtctggtag cattggtttg tcttgtgtgg
     1921 ttagagatga tatatcagct atggttaatc aaaggatttt aaaaatttcg attaaaaatt
     1981 ttaatagtga tgttttggta ttgcttttaa attcttttat ttgtaaaatg caatttgaga
     2041 gaattggtac tacaggtggg gttcaaacaa atctttcttc aatagatatg caaaatatcc
     2101 ttatccctaa aatagattct acaactcaag aaaaaattgc aaaatatata caagaaagct
     2161 ttaatttaag gaaaaaatct aaacaattat tagataatgc aaaaattaaa gtagaagagc
     2221 aaatacaagg aaaaatatga ttatcaatgg acaaaagctt gagttaaaag agcttaaatt
     2281 tatggatttt atcaaagaaa aaggcttgaa aatagaactt atcgccttgg aattaaatgg
     2341 agagattata cctaagagtg aatttgaaaa tttgatttta aaagaaaacg ataaagctga
     2401 aatcgtaagt tttgtaggag gtggatgatg agagtaaaat tcaatggcaa agaacttgat
     2461 acagacttta aaacaagttt ggaatttttt gaaaatatca gcaaaaatga aaatgatgta
     2521 tggattatca atggttttgc aacaaaagag aatatcgctt taaatgaaaa tgatgagctt
     2581 ttttgtatag aaaaaaatac tttacctcca aaagacgcac tagatgctat gatgagagca
     2641 agacatacac caaagcttca cgataaactt aaaaatgggc gcgtggcggt gtgtggttta
     2701 ggcggacttg gatcacatat agcgataaat ttggcaagaa gtggagtggg gtatttaaag
     2761 ttgattgatt ttgatgtgat tgagcctagt aatttaaatc gtcaagctta ccgtgtaagt
     2821 gatttgggca agtttaaaac cgaagcttta aaagagcaaa ttagcgaaat taatccttat
     2881 atcagcgttg aaatttgtac tttaaaaatt gatgaggata atttagagtc tttgtttaaa
     2941 gatatagata tagtttgtga agcctttgat agtgctatcg caaaagcaat gatagcgcaa
     3001 aattttcata gattttacaa agatggtatt ttaatctgcg cttcagggct tgcgggctat
     3061 ggtgatagca acagcataca aacaagaaaa attgctaaaa atttctatgt gtgcggggat
     3121 ttggtaaatg gtgctaaggt gggaaatgga cttatggcgc caagggtaaa tatttgcgca
     3181 ggacatcaaa gtaaccttgt tttagagctt ttagcaaata aggagtaaaa atgcaagaaa
     3241 atttaaaaaa cgataaatta aaaataggca aatacgagtt tgattcaaga tttattttag
     3301 gttctggaaa atattcgcta gagcttataa aatcagctat agaagaagct aaaacacaga
     3361 ttatcactct agccttacgc cgtgcaaata caggggaaat tgctaatata cttgattata
     3421 tccctaaaaa tatcacactt ttacccaaca cttcaggcgc aagaaacgcc gatgaagctt
     3481 tacgcattgc aaggctttca agagagcttg gttgtggaga acttatcaag atagaagtga
     3541 taagcgatag taggtatttg ctgcctgata attatgaaac gattaaagct tgtgagcttt
     3601 tagctaaaga gggttttacg cccctacctt acatgcatgc tgatctttac gcagctagag
     3661 ctatgcgtga tgctggagct gcggctatca tgcctttagc agcgcctatt gggagcaata
     3721 aaggtttatg tgctaaggaa tttatacaaa ttttgcttaa tgaaattgat ttgcctatca
     3781 ttgtagatgc gggtattgga agtccttcac aagcttgtga agctatgcaa atgggagtaa
     3841 gtgcggtgat ggtaaataca gccatagctg aagcaaaaga tgttgcttta atggctaaag
     3901 cgttttcttt ggcagtaaat gcgggaagag cggctttttt agcaggtttg gcaagtgtga
     3961 gtaaagctaa agcaagttct ccattaacag gctttttaag ggattgatta tgcaagatta
     4021 tatgcagtat ttacctcata tgcaggaaat aaaaagcgaa attttaaaca aggttttaac
     4081 tcaagttcaa agttatgatg agagtcaatt tagcgctaaa gatgttaaaa atgctttaaa
     4141 tcaaacacat ttaagcatag agcatttaaa agctttgctt tcaagtgcag cagaagattt
     4201 catagaagaa ttagccttta aatccgctaa agtcaagcaa aaatattttg gaaattctat
     4261 ctctcttttt accccacttt atttgtcaaa ttattgtaat tctaaatgtg tttattgtgg
     4321 ttttcaaaaa ggtaataaaa tcgcaagagc caagctaagt gaagctgaaa ttcacgaaga
     4381 aatgcaagcc attgctaaaa gtggtttaga agaaatttta atgctaacag gcgagggtag
     4441 ggagtttgca agtgtagaat atatagcaaa tgcttgtaaa atagctagag agtattttaa
     4501 ggttgtaggc gttgaaattt atcctatgaa tgaagatgaa tataaaattt tgcatgaaaa
     4561 gggttgtgat tatgtgactg tttttcaaga aacttacaat gctttaaaat attctaaaat
     4621 tcatttagct ggtgaaaaac gcattttccc ttatcgcttt aatgctcaag aaagagcttt
     4681 aaaagcgggt atgcgtggag tggcttttgg cgcacttttg ggcatagatg attttagaaa
     4741 agacgccctt gctacggcac ttcatgcgca ttttttacaa caagcttatc ctcatgctga
     4801 aatttctatt tcagtaccac gtttaaggcc tattatcaat aatgctaaaa ttcatcctaa
     4861 agatgtgagt gaaaaacgcc ttttgcaagt actttgtgct tatagacttt ttttaccttt
     4921 tgcaggcatt accatttcaa gtcgtgaaag aataggcttt agagatgagg ttattaagct
     4981 tggtgctact aaaatgagtg caggagtgag tgtgggtata ggtgagcata agggtgagaa
     5041 aaagggtgat gagcagtttg aaatttcaga tgatagaagc gtagatgaaa ttttagctat
     5101 gcttaaaaga tccaatttac aagctgtgat gagcgatagt atctatgtgg gataaaaaaa
     5161 tcatcgccat aagcgataga aaatgtgtag aaatagactt tttaaagcag attgaaaaac
     5221 ttgctaaggc taaggtagat gctatagttt taagagaaaa agatttaagc gaatttgagt
     5281 attatgattt agcaaaagaa gttttaagca tttgcgtaaa gcaaaaagtg acttgttttt
     5341 tgcatttttt tgatagggag tgtttaaaat tggggcatcg ttattttcac gcaccgcttt
     5401 ctttgctaag aaaagagcct aaattaataa aatattttca tatacttggc acttcagtcc
     5461 atagtaaaga agagctttta gaggcgatga gttataaggt aaattatgct tttgtagggc
     5521 atatttttga aagttcttgc aaggtgggtt tagagcctaa agggattgat tttttaaaat
     5581 ccttgcttga atttagtcaa attccacttt atgctatagg cggtatcaat actcaaaata
     5641 tagaaaattt taaagatata aatatagcag gcgtttgtat gcgtgaaatt ttaatgaaag
     5701 aaaaagatct taaaaagtat cttttagaat gtaggcaaaa tttacgatga ataaaattct
     5761 ttctttacca gaagatttaa agcaattaaa aggtgtcaat tataaaaaaa ttaaatcttg
     5821 cacttttgct aaatatacac aaacgga
//
LOCUS       DAEBKH010000098         5768 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.098, whole genome shotgun sequence.
ACCESSION   DAEBKH010000098 DAEBKH010000000
VERSION     DAEBKH010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5768)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5768)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5768
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.098"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..1280)
                     /locus_tag="KIL20_001280"
     CDS             complement(<1..1280)
                     /locus_tag="KIL20_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HBD2721303.1"
                     /translation="MNFRSLNISTKLILSVAIGVILGIIVLVSTVSIYISENMEKEAK
                     DSIFLASKRYTNYMEGILNETVALTKGTATSLNDMFEHNNQVDADLIESLMKNLFDSS
                     LYSAYTFLYLKDTSVLGDAQGIDKRYTSSDGKTFAMIYFDQTTGKSGGIETIQTPNNF
                     GNLKIIEQVEKNAKYGDKDSLFVGPPTKLNYDGKDFLGINFGMPIFNNKGKLIGVAGY
                     TLDFSEVSETILDPKLDFFEGDLRFLMTDKGVITIHKNHNAILKTLGDINKDPSVELV
                     NNAVKEHKTVIIDDYVASTGDLSYASVSSFSTANNSSHWSMVVTAPKNSVLAPLKKLE
                     IIFIIISFFILLVILIIVYVCVKKIVGSRIPVILKSLENFFHFLNHKKHEVDLISIKA
                     DDELGKMGKMINENILATKKGLEQDNQAVKESVQT"
     gene            1449..2324
                     /gene="zupT"
                     /locus_tag="KIL20_001281"
     CDS             1449..2324
                     /gene="zupT"
                     /locus_tag="KIL20_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HBD2721304.1"
                     /translation="MQFTFEQIFIAMLLTLFAGFSTAIGSIIAFFSRKDDLRVLSLGL
                     GFSAGVMIYISFMEILPTALKDFKNHYDSHWAELLGLACFFGGILISLLIDKLIPEDV
                     NPHEPKEDLSELKICPLPQKGQNPPKFHPGEKLHQINTKALKRTGIFTALAIAIHNFP
                     EGFATFISSLDNLTLGIAIAIAVAIHNIPEGLAVSLPIYHATGDKKKAFIYSALSGFA
                     EPLGAFVGALILLPFIGDLTLAISFAVIAGIMVFISLDELLPAAKTYDKAHDSLYGLI
                     AGMAIMALSLNLLGQ"
     gene            complement(2349..4864)
                     /locus_tag="KIL20_001282"
                     /pseudo
     CDS             complement(2349..4864)
                     /locus_tag="KIL20_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343706.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
     gene            complement(4875..5449)
                     /locus_tag="KIL20_001283"
                     /pseudo
     CDS             complement(4875..5449)
                     /locus_tag="KIL20_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343707.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
BASE COUNT         1739 a         1005 c          868 g         2156 t
ORIGIN      
        1 gtttgaactg attctttaac ggcttgattg tcttgttcta aacctttttt agtagcaaga
       61 atgttttcat tgatcatttt gcccattttt ccaagttcat catcggcttt gattgaaatt
      121 aaatcaactt cgtgtttttt gtgatttaaa aaatgaaaga aattttctaa agattttaaa
      181 ataacaggaa ttctagatcc aactattttt ttaacgcaga cataaactat aatcaatatg
      241 acaagtagta taaaaaaaga aatgatgata aaaataattt ctagtttctt taaaggtgct
      301 aaaactgaat ttttaggagc agttacaacc atactccaat gacttgaatt atttgcagtg
      361 ctaaaagatg aaacggatgc atagcttaaa tctccagttg aagcaacata atcatctatt
      421 ataacagttt tgtgttcttt aacagcatta ttgactaatt ccacagaggg atctttattt
      481 atatcgccaa gtgtttttaa aatagcatta tgatttttat gaatggtaat aacaccttta
      541 tcagtcatta aaaatcttaa atccccttca aaaaaatcta attttgggtc aagtatggtt
      601 tcagaaactt cagaaaaatc taaagtatat ccagcaactc caatcaattt acctttatta
      661 ttaaaaatag gcattccaaa attaatacct agaaaatctt ttccatcgta gttaagttta
      721 gttggtggcc caacaaataa actgtcttta tctccatatt tagcgttttt ttctacttgc
      781 tctataatct ttaaattacc aaaattattt ggcgtttgaa tcgtttctat tcctccagat
      841 tttccagtgg tttgatcaaa ataaatcata gcaaaagttt taccatcaga acttgtgtat
      901 cttttatcaa ttccttgagc atcccctagc actgaagtat cttttaaata caaaaaagta
      961 taagctgaat ataaactact atcaaataaa tttttcatta agctttcaat caaatcagca
     1021 tcaacttgat tattgtgttc aaacatatca tttaaggaag ttgcggttcc ttttgtaagt
     1081 gcaacagttt catttagaat accttccata taattggtgt atctttttga agctaaaaat
     1141 attgaatcct tggcctcttt ctccatattt tcagaaatat atatggaaac tgttgaaact
     1201 aatacgataa tgcctaaaat tacccctata gctacagata gaataagctt agtgcttata
     1261 tttaaagaac gaaaattcat attttttcct taacttttaa aaatttataa aaaacttaat
     1321 atagtattct atattttttt aaaatattct taaaaatttt aatatctttt gtatttttac
     1381 catatgttaa ctttttataa atataagtat ttaaaatatt gaaattttat tgaagttaag
     1441 aattattaat gcaatttacc tttgaacaga tttttatcgc aatgctactg actctttttg
     1501 caggtttttc tacagctata ggttctataa tagccttttt ttctagaaaa gatgatttaa
     1561 gggtgctttc tttaggactt ggtttttcag ctggggtaat gatatatatt tctttcatgg
     1621 aaattttacc cactgcactg aaagatttta aaaatcacta tgattcacat tgggctgagc
     1681 ttttgggatt ggcttgtttt tttggtggaa ttttaatatc tttattgatt gataaattaa
     1741 tccccgaaga tgtcaatcct cacgagccta aagaggattt aagcgagtta aaaatttgtc
     1801 ccttacctca aaaaggacaa aatcctccga aatttcatcc tggagaaaaa ttacatcaga
     1861 tcaatactaa agctttaaaa cgcacaggga tttttacagc tttagctatt gctatacata
     1921 atttcccaga aggttttgct acttttattt cgagtcttga taatcttact ttaggaattg
     1981 ctatagctat agctgtggct atacacaata tccctgaagg tttggccgtg agtttgccaa
     2041 tttaccatgc tacaggagat aagaaaaagg cttttattta ttcagctctt tcgggttttg
     2101 cagagccttt gggtgctttt gttggagctt tgattttatt accttttata ggcgatctta
     2161 ctttagctat aagttttgct gtgattgcag gaattatggt ttttatatct cttgatgaac
     2221 ttttgcccgc tgcaaaaact tatgataagg cccatgatag tttatatgga cttatcgcag
     2281 gaatggcaat aatggcttta agtttaaatt tgcttggaca atagaaagcc ttgcggcttt
     2341 cttgcaattt aattcacacc ttttggcgca ttaaaggcag taagttttgg tggttcacct
     2401 ttaaattttt ctatgtttac gagccctgtg tgagagatat tgccattggc aagttttgaa
     2461 gttggcatat ccatggttaa aacatttgca tttccacatt tgcaaagtcc gttttcatta
     2521 ggatcatact aagcaccttc acaaagcctt acaacccctt gcatgatttc atcgcttaca
     2581 acagcacctg ctaaaacttc accgcgtttg ttaaacacgc gtactacatc gccatttttt
     2641 ataccaagtt tttttgcatc tttaaaattg attaaaatag gctctctatc ttttattgca
     2701 taagtatctc ttaagcttgt gtggcaaagt tgagagtgca agcgatctct tgggtgattt
     2761 gtaagtaagt ggaaaggtgc ttctttgatt gcatttccaa gccattcaat aggctcaaac
     2821 caagtaggat gggctttgca atcatcataa ttataatttt taatcgcttc tgagtaaatt
     2881 tcaataagtc ctgaatctgt acccagagca tttaagatag gatcttctat aaattctgaa
     2941 aaacgagtcc attctaaact ttcagctgtt agttcaaaag tgattggttc atttttagcc
     3001 caaaattctt caaaacttgg cataggaata gcaaaagctt cgccaaaact ttgagtttgt
     3061 tttagggcac tgttgtagta ttctttgatg aaatctttag cttttttgcc attttctgtg
     3121 taggcattaa agacactttt tccataaatt ttacaaatat cagagaaaat tacataatca
     3181 tctttgcttt cacccacagg ctcaactgct tgtttcatag gagctatatg catatttgaa
     3241 taatctcctg tcatggcaat atcatctctt tcataagatg aagttacagg cataacaata
     3301 tctgccattt tagctgttgg ggtccagcaa atttcattta ccacaacggt gcgtggtttt
     3361 ctccatgctt ttacgttagt gttagtatct tgatggtgta ctaaaggatt tccgcctacc
     3421 cagtaaatga aatcaatatc aggataggta agcttagagc cgttgtgatc tatggttttt
     3481 ccagggtgaa gtaaagcatc agcgattctt gctacaggga aagaataact cgctgcattt
     3541 tgaagccatt ctgcgccttc gtttgaagtt tcgctttttg ctaaaccttt aaatttacca
     3601 tttttccaaa tccctaaact acctgccgtc ataccgccga taactccgcc tttgcaagtt
     3661 ggaacaccgc cattgctgta atgatagctt agtccaaaac cacctccttt tgtgccgatt
     3721 tgtcctaaca ttgcacaaag agtaactagt atccagtgag gctgttcgcc atgatgtgct
     3781 ctttgcatac cccaaccact cataatcata gtaggattat cataaaaagt ttcagctaat
     3841 tttttgatag ttttttcatc gataccgcaa attttacttg cccatttggt atcttttttc
     3901 actccatctt ctttaccttc taaataatct ttaaatttat caaagcctgt agtgtaagtg
     3961 tctaaaaact cgtaattaac ttttttctta gcaattaaat ggcttgccat acccatcatt
     4021 aaagctacat cggtatttgg gcgtggagct atccatttgg catttaaaaa ttttgctgta
     4081 gtggttttta taggatctat acaaattatt ttgattttac tgtctttaag tttttcaaaa
     4141 tacgccaaac ctctttgttc gtttgaagtc caagctatgc gtaaagtaga aagcggatca
     4201 gcaccccaaa tcacaacata tttagaatca cttaagatat tttcccacga ggtttgttgc
     4261 tcataaactt caatcgatcc tacaacataa ggcataatca cttgagaagc tcctgtagaa
     4321 tagtctcctg tagctcctac aaatccacct gttacattta aaaatctatg aagtaagatg
     4381 cgtgagtttt acatatttcc acttgatttc cagccatagc ttccaccaaa aatcgcactt
     4441 gcatctttac tatctcttgt tttttaagct ctttggcgat aagcttgatc gcttcatcat
     4501 aacttacgcg aacaaactca tcttttccgc gaagctcagg cttaggattg tcaggatttt
     4561 caaggtaaga tttacgtaca taagggtact tcacacgaga tttataaacc atatcggcag
     4621 tatagtgttg taaaggatta tccatttttg taactttttc ctaaggttca ctttttacta
     4681 tcttgccatc ttttatagtg agttttaaaa tctcccagtg tgctgcggta atcacttctc
     4741 cattttttac aagtccaagg ctaacttttg aagcttctaa ggtttttcct gcacttaagc
     4801 ttggaatgag aggtaaagca cttaagctcg ctccaatttt taaaaatttt cttctatcta
     4861 gcatgctttt ctccttattt tgttttaaaa tcttttgcgt ttttttgtaa gtattctaaa
     4921 ctagccatct gtctttttta tcaatgcctg ttctatcagc catagaacgg aaaattgcag
     4981 gccaagtatt agctgtaaat tctttttctt tgtggatagc atgacaaatt ccgcagttat
     5041 ttacaaaaag ctctttagct cgatttaaca tttctttatt gtctttgaca aattcttttt
     5101 gttctgccca aatttcaagg cttaccttat cccattttcc atcttttcca gttattcttt
     5161 gagagaaatt taattttgta tttttagaaa aagctgcaac aataattctt tgagagtcat
     5221 tgaaataaat cacagaagtt gctttaggat ttacataacc atcaattttt agcaaaaccc
     5281 tgttattttc gctttttaac acttcaaaag gatttgtagg taaaagtctt cctatgactt
     5341 tagtatcatc tttattaaga taaagtgata caacttcatc ggcatagacg gtattttctg
     5401 cccataaata tgtcgctagg acaacaaaag aaatgaaaat ctttttcatt gctattcctt
     5461 aatataaatt tgatgtaaat gtattttaat actatgcaat ttaattatta cttaattgta
     5521 taatttttac taagattact tatttttagt gctttaatat tattctttat tgatataata
     5581 aattttgagt taattatatt ttacttattg ttttttagaa aagataaaac ttcaattata
     5641 aaaaaaaagt ttgttttgag ctcagattaa tacttctgag cccattttga tctcgttgag
     5701 ttttaaggta taagcttttt atagctttat tttccctccc atttttactc tcatttagta
     5761 aagtgctt
//
LOCUS       DAEBKH010000099         5616 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.099, whole genome shotgun sequence.
ACCESSION   DAEBKH010000099 DAEBKH010000000
VERSION     DAEBKH010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5616)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5616)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5616
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.099"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            356..2278
                     /locus_tag="KIL20_001284"
     CDS             356..2278
                     /locus_tag="KIL20_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HBD2721305.1"
                     /translation="MIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQN
                     SDKLLLPVENLYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAA
                     KRSLVQAKKITVDLNRQTDFIASAGFIYTSDQDKACYEILQDFQSGKVMDRLLSGDVG
                     FGKTEVAMNAIYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSS
                     AEKKQVLQNLKENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNS
                     HILSMSATPIPRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDALLKEAIARELR
                     RGGQIFYIHNHIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFENKEYDLL
                     LSTSIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAIT
                     KDALKRLVSLESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLED
                     ELNALSKNEVDQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIE
                     GEIEDRFGKLDIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSK
                     DDDDILEAILTHLRKA"
     gene            2280..3041
                     /locus_tag="KIL20_001285"
     CDS             2280..3041
                     /locus_tag="KIL20_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD2721306.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHVKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            3038..3724
                     /locus_tag="KIL20_001286"
     CDS             3038..3724
                     /locus_tag="KIL20_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HBD2721307.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKTKRLKGLVESIINTY
                     ENLENFKTNASREWLLNIKGLGFESVDSILNYLCKREILVVDNYSLRLAFYLGYEFEN
                     YEELREFFQSDIESEQENLYKILGKKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            3721..4533
                     /gene="thiD"
                     /locus_tag="KIL20_001287"
     CDS             3721..4533
                     /gene="thiD"
                     /locus_tag="KIL20_001287"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HBD2721308.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNVVIDPVMFAKNGYALMPQENCDFFKQTIIKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGVKAVLLKGGHSEANANDVLYDGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKDYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            4523..5155
                     /gene="thiE"
                     /locus_tag="KIL20_001288"
     CDS             4523..5155
                     /gene="thiE"
                     /locus_tag="KIL20_001288"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HBD2721309.1"
                     /translation="MKNKLDLSLYLVATKGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            5133..>5616
                     /locus_tag="KIL20_001289"
     CDS             5133..>5616
                     /locus_tag="KIL20_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HBD2721310.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIYPAIFIFTSPLSVEN
                     F"
BASE COUNT         2059 a          642 c         1061 g         1854 t
ORIGIN      
        1 ttggtgtatt gatgattttt ttgattattt agaacttgat tttttagctt gtgaaaagtt
       61 tgatattaat gaatatgaaa aagatataag ttttgtgaat gcaaaaattt tacctcaagc
      121 taaaaaattt aaagaattgc aaagttctta caataaagat ttttttgaat ttcataaaaa
      181 taaaaaaatc acacttttag ctaaaaacga agctttattt aaagctttag agcttgaaga
      241 tactcaaaat atccattttg taaaaagtga tttaaggctt aatcttatta gtcctgaaga
      301 gctaattatt tctttaaatc aaaaagaaaa acaaaaaaca agaaaaaaag ctagtttgat
      361 tatagatgag cttaaaaatg gggattatat agtacacgaa gattatgggg taggtaaatt
      421 tttaggtctt gagatgatag tgataagcgg agcaaaaaaa gagtttgttg ctatagagta
      481 tcaaaattct gataagcttt tattaccagt ggaaaatctt tatttgattg ataaatattt
      541 gggcgtgagt ggatctattc caagcttaga taaactaggt aaaacaagct ttattaaact
      601 taaagaaaaa ttaaagacta aacttttagc catagcttct gaaattgtta ttatggcggc
      661 taaaagatct ttggtgcaag caaaaaaaat tacagtggat ttaaatagac agactgattt
      721 tatagctagt gcgggtttta tttatacaag cgatcaagat aaagcctgtt atgaaatttt
      781 gcaagatttt caaagtggaa aagtcatgga taggctttta agcggtgatg tgggttttgg
      841 aaaaacagaa gtcgctatga atgctattta tccagtagtt aaaagtggat tttgcgcatt
      901 tttatttgcg cctacgactt tgctttctca tcagcattat aaaaccttaa aaaagcgttt
      961 tgatcctttt gatataaagg tttttaaact ggatcgcttt acaagtagtg cagaaaaaaa
     1021 acaagtttta caaaatttaa aagaaaataa agcttgtgta gttgtaggaa ctcatgcact
     1081 tttaagtgta gaatgtgaaa atttagccct tgttattatt gatgaagagc ataaatttgg
     1141 agtgaagcaa aaagaaaagc ttaaagaaat cactcaaaat tcacatattt tatccatgtc
     1201 agcaacccct ataccaagaa gcttaaatca agctttaagt tctataaaat cttatagtgt
     1261 tttgcaaact ccaccagaag atagaatgga tgtaagaact tttgtcaaag aaaatgatga
     1321 cgcactttta aaagaagcta tagcaagaga gttaagacgt ggtgggcaaa ttttttatat
     1381 tcataatcat attgcaagta tagagcaatg taaaaagcat ttattagaac ttttttctac
     1441 tttgcgtatt ttgattttac attctaaaat cgatgccaag atgcaagaag aagaaatgtt
     1501 gaaatttgaa aacaaagaat atgatttgct tttaagtacc tctatcgtag aaagtgggat
     1561 tgatttacca aatgcaaata ctatcatagt agaaaaaagc gatcgttttg gcatggctga
     1621 tttgcatcaa ttgcgtgggc gtgtaggaag aagtgataag caaggttatt gttatttttt
     1681 aattgaagat aaaaatgcta ttacaaaaga tgctttaaag cgtctagttt ccttagaaag
     1741 taattctttt ttaggcgcag gttctatttt ggcttatcat gatcttgaaa ttcgtggcgg
     1801 tggaaattta ttaggcgtag atcaaagtgg acatattgag caaattggat atagtttata
     1861 tcttaaaatg ttagaagatg aacttaatgc tttaagtaaa aatgaagtgg atcaaaaaga
     1921 aaataaactt gatttaaaac tcaatgttaa tgccttttta aacagcgaac ttatcagcga
     1981 agatcgctta agattagaac tttatagaag acttagcaag tgtgagcaag ttcatgaggt
     2041 ttatgagatc gaaggtgaaa ttgaagatcg ctttggaaaa cttgacattt atactaagca
     2101 atttttatct ttgattacta ttaaaatttt agctttaaat aaatttaaaa gcattagtaa
     2161 ctatgagcaa aatattcaat ttactgcttt aaatgatgaa aaagaactca tcaaggcaaa
     2221 aagcaaagat gatgatgata ttttagaggc aattttaacg catttaagaa aggcttaaaa
     2281 tggattggaa taaaacttat gcagcaattt atagagcaag aaaagattat ttaaagccta
     2341 tttttgaaat cgatcctatt gctttaaaag atttagtagg tatggaaagt caaaaaaaag
     2401 cactttatga aaatacttta aatttcattc aagataaggg agcaaatcac gcacttttat
     2461 ggggatctaa gggcactgga aaatcaagtt taattaaagc tatatttaat gaatttaaag
     2521 aacagggctt aagacttgtc gaattaaata aagaagattt atttgcctta gcagatatca
     2581 tcgatgaaat cagattagaa aattttaaat tcatactttt ttgtgatgat ttttcttttg
     2641 aaaagggaga tgatagttat aaatttttaa aacctttact tgagggaagc atagaaaaag
     2701 ccccaaataa tgtaattatt tatgcgagtt caaatcgtag gcatttatta agtgaaagca
     2761 ttactgataa tcttgatacg caaatcacac atacagaact tcatttaagc gatgctgctg
     2821 aagaaagatt aagtttgagt gatagatttg gtttgtggtt aagtttttat cagggaaatt
     2881 tagaagagta tttaaagatg atagattttt attttaaaga ttattcttgt gataaagagc
     2941 ttttgcacgt taaagctaaa gaatttgcta ctctaagagc aagtagaagt ggtcgtaccg
     3001 caaagcaatt ttatttagct tttaaggaga attttaaatg actggagcac aaatttttac
     3061 caagctttta aatttggatt taaattatca tgattttgat tggcttgaaa atcaaggatt
     3121 gagtgaattt gagcttttaa tttctgtcgt tttaactcaa aatacaaatt ggaaaaatgt
     3181 cttaaaagct ttagaaaatt taaaaaaaga aaatattgca agcttagaac aaatcaatac
     3241 tttatccaat ttagaacttg caactttaat taagcctagc ggattttata ataccaaaac
     3301 taagcgttta aaaggtttgg tagaaagtat cataaacact tatgaaaatt tagaaaattt
     3361 taaaacaaat gcaagcagag aatggctttt aaatatcaaa ggtttaggtt ttgaaagcgt
     3421 tgatagtatt ttaaactatc tttgcaaaag agagattttg gttgtagata attatagttt
     3481 gcgtttggct ttttacttag gttatgagtt tgaaaattat gaagaattaa gagaattttt
     3541 tcaaagtgac atagagagtg agcaagaaaa tttgtataaa attttaggaa aaaaatgcga
     3601 actttacgaa ctttatcaaa tttttcatgc tttgattgta gcttttgcaa aacagagttt
     3661 taaaggacaa aaattaagcc ctaagggtga agaatggatc aaaattttaa aggaagattt
     3721 atgaaagcaa aaggaagtga acttatacct gttttaacta tagcagggag tgattgtagt
     3781 ggtggagcag ggatacaagc cgatcttaaa acctttagtg cacacaatct ttttggtatg
     3841 agtgtggttt taagtgtggt agctgaaaat accgcaaggg tgatttctgt acacgatata
     3901 cctactcaaa gcgtggatga acaaatgctt gccgtgtttg aagatatagt gccaaaggca
     3961 actaaaatcg gaatgatagg ttcttgtgaa ttaatgagct gtgtagctaa aaatttaagc
     4021 gagtttaaac ctcaaaatgt agttattgat cctgtaatgt ttgccaaaaa tggctatgct
     4081 ttaatgccgc aagaaaattg tgattttttc aaacaaacta taataaaatt tgcagacatt
     4141 cttactccta atattcctga agcagagttt ttatgtggtt ttaagatcgc taatgaagag
     4201 cagatgataa aagcagctaa gcatttatgc agcttggggg ttaaggcagt tttacttaaa
     4261 ggcggacata gtgaagcaaa tgccaatgat gtgctttatg atggaaaaga aatttatatt
     4321 ttaaaaggcg aacgcataga aactaaaaat actcacggta caggttgtac gctttcttcg
     4381 gctattgcta gtaatttagc taaaggcaag gatttatttc acgctgttag tgaagctaaa
     4441 gattatgtaa gaaatgcgat ttattattca cttaatcttg gaaaaggttg tggtcctaca
     4501 aatcattttt tcaagtttct agatgaaaaa taaattagat cttagccttt atttggttgc
     4561 tactaaggga aataaaagcg aggagtgttt tttaaatact ttagaaaatg ctataaaagg
     4621 cggagtaagt atcatacaac ttcgtgaaaa agagcttaat gcaagagaat tttataaact
     4681 aggcttaaag gtgcaaaaac tttgcaagtc ttataaaata ccttttttga ttaacgatag
     4741 ggtagatata gctttagcct tagatgctga tggggtgcat ttaggacagg aagatttaga
     4801 agcaaaatta gctagaaagc ttttaggaga tgaaaaaatc ataggcttaa gtcttaaaaa
     4861 gttagaacaa cttgagttta tacaaggagt aaattatcta ggttgtggag ctattaaggc
     4921 aacgcctact aaagaaagtt cgcttttaag ccttgagctt ttaagtcaaa tttgtgataa
     4981 aagccctata ggggttgtag ccataggtgg gattgacaaa gaagcacttg ttgagttaaa
     5041 gggtataaat ttaagcggtg tggctgtggt tagggcgatc atggatgcta aagatgcttt
     5101 tttggcagct aaagagctaa agcgtaaaat ctatgaaaat ttatctctta aatgaaactc
     5161 cttttgaagg ggtggaaaat cttattttaa atgagattgt tttttatgat tttagtgtgg
     5221 atttgagttt gtatgatgct ttaatctgca cttcaaaaaa tgctttaaaa gctttacaac
     5281 atgcaaaaat cactttaaat ttcaaactca atttatacgc tgtgggacaa agtacagctc
     5341 aatacgctaa aaatttaggt tttaaaaaga ttaaaattcc atcaaaggct tatggaaaag
     5401 atctttttct tgaatttaaa gaggagttaa aaatgcaaaa atgtttgtat ttaagggcta
     5461 aaaatattgt ttcaacttta aatttggatc ttaaaaatgt aggtgtggat ttagatgaaa
     5521 tgatagttta tgaaaatgtt tttaaaaaag gcgacaaaaa gcttatctat cctgctattt
     5581 ttatattcac ctctccttta agtgtagaaa attttt
//
LOCUS       DAEBKH010000100         5581 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.100, whole genome shotgun sequence.
ACCESSION   DAEBKH010000100 DAEBKH010000000
VERSION     DAEBKH010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5581
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.100"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..179)
                     /locus_tag="KIL20_001290"
     CDS             complement(<1..179)
                     /locus_tag="KIL20_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HBD2721311.1"
                     /translation="MKYEFLCKNPDSKKLIVVFGGFASHPSHFSHLKSDKNVILFYDY
                     ENFDLNFDFKAFDEL"
     gene            complement(176..1318)
                     /locus_tag="KIL20_001291"
     CDS             complement(176..1318)
                     /locus_tag="KIL20_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HBD2721312.1"
                     /translation="MKLEKILQDLEQNHNLRTLTPLKHENKFVYKQDHKLLNLVGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSGNFEIYEKLESFLKTKFKDKEILHF
                     NSGYHLNISCIAALSSVSKTLFLTDKFIHASMIDGLRLGRADFFRFHHKDMNHLESLI
                     QKHYENYENIIVLSEALFSMDGDFSDFKTLCELKRRYDKIKLYIDEAHSVGCFDEEGL
                     GLVKKLALENEVDFLVFTFGKALASMGACIICDEKYKKFFINKARAFIYSTALPPINV
                     AWTQFIFKKMPYFKKEREKLELLSTFFKSKLQEKNHIVLGDAYIICLLLGENKKALEI
                     SQKLQKAGFFAPAIKEPTVPKNTARIRFSLHAGLNTEELERIIELL"
     gene            1386..2669
                     /locus_tag="KIL20_001292"
     CDS             1386..2669
                     /locus_tag="KIL20_001292"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HBD2721313.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEARFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(2656..3261)
                     /locus_tag="KIL20_001293"
     CDS             complement(2656..3261)
                     /locus_tag="KIL20_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HBD2721314.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(3271..3585)
                     /locus_tag="KIL20_001294"
     CDS             complement(3271..3585)
                     /locus_tag="KIL20_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HBD2721315.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLITVIIACTVGLKF
                     LS"
     gene            complement(3588..3926)
                     /locus_tag="KIL20_001295"
     CDS             complement(3588..3926)
                     /locus_tag="KIL20_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HBD2721316.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIVILLLSI
                     IALKWISKEA"
     gene            4060..4596
                     /locus_tag="KIL20_001296"
     CDS             4060..4596
                     /locus_tag="KIL20_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HBD2721317.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            4593..5138
                     /locus_tag="KIL20_001297"
     CDS             4593..5138
                     /locus_tag="KIL20_001297"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HBD2721318.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHAKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            5140..>5581
                     /locus_tag="KIL20_001298"
     CDS             5140..>5581
                     /locus_tag="KIL20_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HBD2721319.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGMNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFN"
BASE COUNT         1978 a          820 c          870 g         1913 t
ORIGIN      
        1 aaaagctcat caaaagcttt gaaatcaaaa tttaaatcaa aattttcata atcataaaat
       61 aaaatcacat ttttatcgct ttttaaatgc gaaaaatgac taggatgtga agcaaaccct
      121 ccaaatacca ctataagttt ttttgaatca ggatttttgc ataaaaattc atatttcata
      181 aaagctctat tatcctttca agttcttctg tattaagtcc tgcgtgcaaa gaaaaacgaa
      241 ttctggctgt attttttggc acggtaggtt ctttgatcgc aggagcaaaa aaaccagctt
      301 tttgaagttt ttgtgaaatt tctaaggctt ttttattttc acctaaaagc aagcaaataa
      361 tataagcatc gcctaaaacg atgtgatttt tttcttgcaa tttactttta aaaaaagtgc
      421 ttaaaagctc taatttttct ctttctttct taaaataagg cattttttta aaaataaatt
      481 gcgtccaagc tacattaata ggtggcaagg ctgtagaata aataaaagct ctagccttgt
      541 tgatgaaaaa tttcttatat ttttcatcac atattataca agcacccatg gaagcaaggg
      601 cttttccaaa ggtaaaaacc aaaaaatcca cttcattttc taaggctagt tttttaacaa
      661 gccccaaacc ctcttcatca aaacaaccca cgctgtgtgc ttcatctata taaagcttaa
      721 ttttatcata acgcctttta agctcacaca gagttttaaa atcgctaaaa tctccatcca
      781 tactaaacaa agcttcgctt aaaacgatga tattttcata attttcataa tgtttttgga
      841 ttaaactctc taaatgattc atatctttat gatgaaaacg aaaaaaatca gccctgccaa
      901 gtcttaagcc atcaatcata cttgcatgaa taaatttatc ggttagaaaa agcgtcttag
      961 aaacgctaga aagtgctgct atacaagaga tatttaaatg atagccacta ttaaaatgta
     1021 aaatttcctt atctttaaat ttagtcttta aaaaactttc taatttttca taaatttcaa
     1081 aatttccact caaacttctt gaactcgaac ttgaaaaaaa caaatcttgt tcttttaggg
     1141 tgtttaaaaa ctcagctttt aactctttgg aagacgccaa ataaagataa tcatttccta
     1201 ctaaatttaa aagtttgtga tcttgcttat aaacaaattt attttcatgt tttaaaggtg
     1261 ttagagttct tagattgtga ttttgctcta gatcttgcaa aattttttca agcttcattt
     1321 ttttcctgta aatttaaaaa tttaaagtat tattttgcca aaatattttt aaaaaagaag
     1381 ttataatgca aaatcaaatc ttaaaaaatc tcgatttaaa acacatttgg cacccttgca
     1441 cacaaatgaa agatcacgaa accctacctt taattcctat aaaaaaagca aaaggtgtat
     1501 ggctttatga ttttgatgat aaagcttata tggattgtgt gagttcttgg tgggtcaatc
     1561 tttttggtca ttgtaatgaa aaaatcgcaa atgccattaa aaaacaagtt gatgagctag
     1621 agcatgtgat cttagcaggc tttacacatg agcccattat caagctttct gcaagacttt
     1681 gcgaaaaagt aggcaggaat tttaacaaat gtttttatgc agataatgga tcaagtgcta
     1741 ttgaagtagc acttaaaatg agttttcatt atcatttaaa taagggagtg aaaaaaagta
     1801 aatttttatc tttaagcaat tcttatcatg gtgaaacctt aggagcctta agtgtgggcg
     1861 atgtagcgct ttataaagat acttacaaag ccttgctttt agagtgttta agcacgcctg
     1921 tgccacaagg caaagactac actaaagagc ttgaaatttt aaaagatatt ttagaaaaaa
     1981 atgcaagtga aatttgtgct tttatacttg aacccttggt acaatgtgca ggaaatatgc
     2041 atatgtatga agcaaggttt attgatgagg ccataaagct ttgccataaa tttggagtgc
     2101 aagtgatttt tgatgaaatt gcagtgggct ttggacgcac aggaactttg tttgccttac
     2161 atcaatgcaa acaaagcccc gattttatct gcctttcaaa agggataacg ggtggattta
     2221 tgccactttc tgtagtgctt acaagagatg aaatttataa tgctttttat gatacttatg
     2281 aaagccaaaa ggctttttta cattctcata gctatacggg aaatacctta gcttgcgcgg
     2341 cagcaaatgc ggttttagat atctttgagg atgaaaatat tttagtaaaa aatcaaattt
     2401 taagcgagtt tatcaaaaaa gaattttcaa gacttgaaaa atttgacttt ttgggtaatt
     2461 ttagaacttg cgggatgatc agtgcttttg atattttaag caccaagtat aaacgcgtag
     2521 gactttttgt atttcaaaaa gccttagaaa aaggtttgct tttaagacct ttagcaaata
     2581 cgatttattt tatgcctcct tacatcatca caaaagaaca aatcgtttat gtactagaga
     2641 gtttagagca gatttttaag gaattttaag ttgtaaaatt tcttgcattt gctctttaaa
     2701 atctttattt aaaatgctat tttcatcaaa aaaatcaaga ttgattatag gaatttttgc
     2761 ataatttttt ataaaatcat cttgtaagat atctttttta cccatcatta caagggctaa
     2821 aagattgata tttctttgct ttaaagcttc aatgctaagc aagatatgat taatgcttcc
     2881 aagatagtat tttgctacca aaatcgtagg gtgtttgaaa atattcacaa aatcaatcat
     2941 agtgtaattt tcatccatag gagaaaaaag cccacccgca agctcaataa gtaggttttt
     3001 gctttttggt aaaatgatat ctaaggcttt ataatcaagc ttttctttga tttttccaag
     3061 atgaggagaa gctggagttt gcaaaaaaat accttcttta aaaatctttg tttttgggct
     3121 aaattttgca ataaactcac tatctgttgg agttcctgct tgaatgagtt taaaataatc
     3181 atagttaaaa ttcgcacaaa aagctgcact aaaatgtgtt tttcctacat cagtatgtat
     3241 tccactcaca taaatttgca caaaaaatcc ttaagaaaga aattttaaac ctactgtaca
     3301 agcaataatc acagtgatta aaaaaagttt taaaaaactt ttactttctt tataaaaaag
     3361 tactcctatc attaccccac cagcagttcc agctcctgtc catatagcat aagcaacact
     3421 catagcgata ttttgcatac ttaaacttaa aaaagtaaaa gaaaatccaa aacacactat
     3481 caaagccaaa aggtaaagct tatttttagt gcttacaagt tctttcatga tcaccacgcc
     3541 aaaaatttca caagcagtag ctaaaaacaa ataaaaccat tccatattta agcttccttg
     3601 cttatccatt taagggctat aatgcttaaa agtaaaatca ctataagcac aagtttaatt
     3661 atagaaacag cctcgttaaa aataaacatt tcatttaaaa ccaccccaat agtgccaatg
     3721 cctacaaaaa cactataagt aatacttact tcaagtcttt cacaagcttt taaaaagcaa
     3781 gtaaaagaaa tacaaacccc aatggctgtt aaaatatagt gccaaatttc tgtagaatac
     3841 ttaagtccac tgacccaaaa acattctata atcccgccta agattattaa aaaccaagct
     3901 atattgatat tgaatttttc attcacatga agccttaaat taacataata tttgtaaaac
     3961 aaattatatc ttaaagaaat taaaagaagc tataaattta cttttccata agccaaaatt
     4021 agatataatc aaagctcatt ttttaagaaa ggataaaaga tgttagaagg tatcgttaga
     4081 gagagtatcg gtagaaaagc tgctaaagct ttaaaaagag atggttatct aattgcaaac
     4141 atctatggaa aaggattaga aaacatcaat gccgctttta aagtaaatga gtttattaag
     4201 gaagttcgta aaaaaactac tttaattttt gatgtaaaag taggttctca aactttaagc
     4261 gttgtagttg tggattatca aaaagatcct gtaactgcag aacttaaaca tgtggattta
     4321 aaagttgcgc aaaaaggtgt gatttctaaa tacatggttc cagttaaaat cacaggaaca
     4381 gctataggtc ttaaaaataa aggtgtttta attcaatcaa aaagaagatt aaaagtaaaa
     4441 tgtgcagctg aaaatttacc aaatttcttc gaacttgatg taagtaaact tgatgtgggt
     4501 gatgctttac ttgttcgtga tattgtagtt cctgcgggag taactatgat tgatgctgat
     4561 agagtagcgg ttgtaggtgt agaaaaagct agatgatttt agtcgtaggg cttggcaata
     4621 taggcgtaga gtatgaaaat acccgtcata atgtcggttt tatgctaatt gacttacttt
     4681 taaaagaaag caattttaca aatcttacaa actctaaatt taaaggagag ctttttaaaa
     4741 taggttcttc tttacttctt cttaaaccta gtacttatat gaataattca ggacttagcg
     4801 taaaagcagt gaatgatttt tataaatgcg aaagaatgat agttatccat gatgatatag
     4861 atataaattt aggagccttg cgctttaaaa aaggcggttc aagtggtgga cataatgggc
     4921 ttaaaagcat agatacttta tgtggaaatg actatgaaag agtgcgtata ggagtgggaa
     4981 agggtgaaaa tgtgatttcc catgttttag gtaaatttaa atccgaagaa gaaataactt
     5041 taagcaaagt tttagagcat gcaaaaaaag ctttgcttga gcttattgaa aatgatgatt
     5101 tgtctgctat atcatccaaa tacagcctaa aggcttaaga tgtggatatt ttttcgtttt
     5161 atttcaggga tttatttaaa aaattttttt attatatttt tttctttact tggtttttat
     5221 tgcggtattg atttgctctt aaattttaaa gatctaccaa aagccgcaaa tcttgatttg
     5281 ctttatgtta tgtttttatc tttttcggca gtgccttatg tattacccat ttctttgatt
     5341 tttgctttgg tagtttcttt gatttctatg atcagagcaa atgaatttgt aagtctttat
     5401 gcgttaggac tgagtagaaa ttatgttatt ttatttcctt ttttatgggc tttatttttt
     5461 tgttgtattt atataggaat gaattttact tcttttgctt atgcaaatga ttataagaga
     5521 aatattttaa aaaatggcac tattatgaat caaagtggag aagtgttttt gaaatttaac
     5581 a
//
LOCUS       DAEBKH010000101         5510 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.101, whole genome shotgun sequence.
ACCESSION   DAEBKH010000101 DAEBKH010000000
VERSION     DAEBKH010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5510
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.101"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..892
                     /locus_tag="KIL20_001299"
     CDS             <1..892
                     /locus_tag="KIL20_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HBD2721320.1"
                     /translation="ILLTLMRNSIIETHTFLVSFVGKSNYFGVFGIYVYLIFITFLAF
                     LSLKIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFISCVISFCIILYFFMVSSKP
                     LTIDEPKEILPNKNGKFIFDIALLRDNKLHRFAYISAEGKVIRFFLINKREDRDSPVA
                     VFDACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGCNPIPLKYEYDGKKITIDV
                     KDVIAGSNYFSQIKEIEVQDPVSKTKIINTQAPFSYSYKGITYYFSNQNNYEEFKKDP
                     TKYVEENEAQFLIQRRNDVG"
     gene            879..2171
                     /locus_tag="KIL20_001300"
     CDS             879..2171
                     /locus_tag="KIL20_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD2721321.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIELTGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALFGFIFGTALSQIISLSIFGYFIDIA
                     FIALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            2161..3279
                     /locus_tag="KIL20_001301"
     CDS             2161..3279
                     /locus_tag="KIL20_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HBD2721322.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDTKLSKELKAYGANVMISPKQDENFISNAEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKTGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAISNEFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            3276..3929
                     /locus_tag="KIL20_001302"
     CDS             3276..3929
                     /locus_tag="KIL20_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD2721323.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            3926..4414
                     /locus_tag="KIL20_001303"
     CDS             3926..4414
                     /locus_tag="KIL20_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HBD2721324.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLIS
                     LL"
     gene            4375..4878
                     /gene="traF"
                     /locus_tag="KIL20_001304"
     CDS             4375..4878
                     /gene="traF"
                     /locus_tag="KIL20_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HBD2721325.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKTQNFALVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(4888..5325)
                     /locus_tag="KIL20_001305"
     CDS             complement(4888..5325)
                     /locus_tag="KIL20_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HBD2721326.1"
                     /translation="MKKTILTILFLLTLTQAKEIQVYESPTCGCCDLWADYMKAKGYE
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIVWLLENKPKDVIGI
                     SAPGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
BASE COUNT         1940 a          864 c          876 g         1830 t
ORIGIN      
        1 tatcttgctt actttaatgc gaaattccat catagaaact catacttttt tggtgagttt
       61 tgtaggaaaa agtaattatt ttggtgtttt tggaatttat gtttatttaa ttttcatcac
      121 ttttttagca ttcttaagcc taaaaattcg caaaaaaaat ataagcaaaa aacaaatttt
      181 agatataaat tatcgcaaaa acgaagctaa aacaagtctt attaatcgct atttttccag
      241 tgtttttatc tcctgtgtta taagtttttg tattatttta tactttttta tggtaagctc
      301 taagccttta accatagatg agcctaaaga aattttaccc aataagaatg gcaaatttat
      361 ctttgatata gctcttttaa gggacaacaa actccaccgc tttgcttata tcagtgctga
      421 aggtaaagtg ataaggtttt ttcttatcaa taaaagagaa gatagggatt ctcctgtagc
      481 tgtttttgat gcttgtatga tttgtggaga tatgggctat atcaaaaaag atggacaact
      541 catttgcatt tcttgcaatg tgcgtatttt cttgcctagt gtaggcaaaa gcgggggttg
      601 caatcctatc ccactcaaat acgaatacga tggtaaaaaa atcaccatag atgttaaaga
      661 tgtaatagca ggatctaatt attttagtca aatcaaagaa attgaagtgc aagatcctgt
      721 atcaaaaaca aaaattataa acacccaagc tcctttttct tatagctata aagggattac
      781 ttattatttt tcaaatcaaa acaactatga agaatttaaa aaagatccta caaaatatgt
      841 agaagaaaac gaagcccaat ttttaatcca aaggagaaat gatgttggct aaaatgattt
      901 ttaactctat atttaaaaac aaaattcaaa aatttttagc ctttcttact tgttttttag
      961 ccacgctttt gctctctact atgctaaata ttaccctaag tataggcgat gaagtaacta
     1021 aacaactcaa aagctatggc tctaatatcc ttgttttacc caaaggctca agtcttagta
     1081 tagaaatagg taatgaactt tatgaaccct taaaaaacaa aaactaccta gaagaaaaaa
     1141 atttatatat gattaaagac atttattggc gtaacaacat caccgcactt gctccttttt
     1201 tagaaggtaa aatcacaatt gaaaactccc agcaaaaagc acttatttat ggcacttatt
     1261 ttcaaaaagc cataaaaatt aaagatgatg atgattttat cacaggtata aaaagtcttt
     1321 atccttattt agcagtgcaa ggagaatggg caaaagatga tagcaatgaa atcatgctag
     1381 gcgaagactt tgctaaaaac aataaactaa aattaggaga tactatcgaa ctcacaggag
     1441 aaaacaatca aagcaaagaa gcaaaaatcg taggcatttt acttcatgcc aatcctaaaa
     1501 tgtcaaataa aatcatcgct cctttaaatt tagctcaaga tttactcaac aaacaagggc
     1561 tttactcaag tgcagaagta agagctttta ccatacctga atcagccctt tctgaaaaag
     1621 tgcgtcgcat gggcgaagaa aaattagatc agttagaata tgacaaatgg tattgctcag
     1681 cttatgtagg ctcaatcgct agtcaaatta gcgatggctt accaggtgct gatgcaaaag
     1741 ctctaaatgc tataagcgat gctcaaagct tggtggttaa aaagatccaa tccttaatgg
     1801 gcattacttg tattatttgt cttattgttg caagtattgc gatttcaagt ctgatgagtt
     1861 ctgaaattca tcgtagaaaa aaagaaatag gacttttaaa agtgcttggt gctaatactt
     1921 ttcaaattta tctcatcttt gctagtgaaa atttaatcgt agctttattt gctgctttat
     1981 ttggctttat ttttggcaca gcactttctc aaatcatcag tcttagtatt tttggatatt
     2041 ttattgatat agcctttata gctttacctt taagctttat ttttgcagga cttattgcct
     2101 tactaggttg cttgcttcct atcaaaaata tcacacaact ttcagctgca ggagtgcttt
     2161 atggtagata agtttttcct taatgagctt tttaaaagca ttagcttttc ttatcaaaga
     2221 ctttttataa tagttttaag tgtttttata ggagcactta cttgctcagc ttttttaaat
     2281 atttattttg atattgacac caaactttct aaagaattaa aagcttatgg agcaaatgta
     2341 atgataagtc ctaagcagga tgaaaatttt atctccaatg ctgagtatga aaaaataaaa
     2401 gaaaatttaa aggctagggc tttaactcct tttttgtatg attttttaaa tttaggcagt
     2461 acaagcggag tggttttagg cactgatttt agggctttaa aaatcaccaa acctttttta
     2521 gaagttaaag aaggaagctt ttccctaaat gattttgatg aaaattcagc ctttttaggg
     2581 gttaatttag ccaagcaact gggcctaaaa acaggcaatg aacttcaaat ttacaatcca
     2641 aacaatggaa aaagcataaa acttaccata aaaggcatac tttcaagcaa tgatgaattt
     2701 gatagcattg ttttagctcc tttaagcgtg gtgcaaaatt taagcgatag agccggtatt
     2761 aactatgcta atgctgtagt ttatggaaat tttgatgaag ttaaagccaa aacacaagca
     2821 atcagcaatg aattcatcga tgcaaaacct atatcttcag tatccttaag tgaaggttta
     2881 gtgcttggaa aaatcaaagc tttaatgttt ttaatcatac ttgtagtatt gatcatagtc
     2941 actactagcg ttaatacgac cttaagctct attatatttt ctcgcaaaaa agaaatcgca
     3001 ctgcgtttag ccttgggtgc gaaaaaaagt gaaattttta aactttttgc tagtgaatgc
     3061 tttatagtaa gtttttttgc tagtttaatc ggagcttttt gtgggatatt tttagccaat
     3121 gtctttggtt atttgatttt taattctagt attgatttta gatttatagc tgtttttata
     3181 gccttaatca tttctttgat ttttgccttt ttggctgcat tttttcctat aaaaagagca
     3241 ttaaaaatca atgtgtgtga aaatttgaaa ggtgaataat gaaaaaagaa cttattaaaa
     3301 taaacaactt aaataaagaa tttggcaaag ttaaagcctt aaacaatatc aacttaagcg
     3361 tctatgaagg agaatggctt gccatcatgg gtccatcagg aagtggaaaa tcaacgcttt
     3421 taaacatact atcactcatg gacactccaa gctctgggga gtatatctta gacaatgaaa
     3481 acctagagca aatggatgag gagcaaaaaa tcaccttacg tcgtgaaaaa atagggcttg
     3541 tctttcaaca atttcatctt atcccctatc ttaacgcctt agaaaatgtt atgctctctc
     3601 agtattatca ctcaagcgta gatgaagaag atgctaaaat ggttcttgaa aaagtaggac
     3661 tttcgcacag actcactcat ttacctagcc aattaagtgg tggagaacaa caaagagttt
     3721 gcatagcaag agctttgatc aacaacccag agcttttact cgcagatgaa cccacaggga
     3781 atttagatga agccaatgaa caaatcgttc ttcaaacctt gcaaaaatta aaaaatgaag
     3841 gcaaaaccat agttttaatc acacacaatc ctgatttagc caaattcgca gatcgaaccc
     3901 ttatcttaca acatggggtg ttaaaatgaa aaaaagcctt ttaatcttaa gcattttgtt
     3961 cttgctcaat gcttgttctt ttgaaaattc aaaagatact ggaaaagttg gagaaaaaag
     4021 cgctgaaatt tcagctaaag ataccttagg aaaagctgta aaacttgctg atgataatac
     4081 aagtttaaaa gttttggtct tttttcaaaa tggctgccct tcttgcttaa aagaactccc
     4141 ttctttagat gaattcatac aaaatcaccc caataaaatc agtgtttatg ctataaattc
     4201 catcgataat gccaatgtgg ttaaggtttt agccgaacaa tttgacttta aaaatgtaaa
     4261 agttttaaaa gacgatctta aaatcaccaa tgatcgttat gctgtgtttg caacccctac
     4321 taccatcatc attaaagatg ggatgataaa agatagaatt ttaggagaaa aaccatggga
     4381 atttttcgaa tccaagctta tttctttgct ttaattatag ctttattttt tgtagcttgt
     4441 gatagtggag aaaattttaa agctttaaat agtgataaaa cctataattt tgcctacaat
     4501 ggttttgaaa aaagcctaaa actaaatgat aaaacacaaa attttgcctt agtatttttc
     4561 acaaaagatt gtggagtttg taaagaacaa attcctattt tgcagaattt ggctaaaaat
     4621 tatgatttta atatctttgt ggttttaggc gatgcaaatg atgcaaatga tgcaaaagct
     4681 tgggctgatg aaaaaggttt atctaattta gcaatgtttt atgaaaaaag agcagctaaa
     4741 tacctttcaa gtgccattgg ggaaatatat ggagtgcctg tgcttagttt tttcaaagaa
     4801 ggaaaaatgg atgaaaaatt cataggctta actccttata gcatacttga aaaagaaatc
     4861 aaaaaagtaa aaagctaaaa atttacttta aagcttttta tctcctataa aatatccata
     4921 aagctcatag cttccatctt ttttcatcaa aattacagga tatttttcac tataaccttg
     4981 ttccattcct gggcttcctt gcggcatgcc aggagctgaa attcctataa catctttagg
     5041 cttgttttca agcaaccata ctatggcact ttcaggaaca tgcccttcaa tagcatagcc
     5101 ttcgatcaca cctgtatggc aactttgata ctcatctttt atacccattt tttctttgat
     5161 tttaagaaaa tcattggttt tatgaacgct aacctcataa cccttagctt tcatataatc
     5221 agcccaaaga tcacaacagc cacaagtagg actttcataa acttgtattt ccttagcctg
     5281 cgtaagagtg agtaaaaaaa gaatagttaa aattgttttt ttcataatcg ctatcctaag
     5341 taaaaaatat ataataatac ttttataaag ttaatatcat cacattttta acactaaaaa
     5401 tgaatttaca aaaatttaat caagaaaaga tttttaatga gtgctgattt tgtctttaca
     5461 gcaaagatat aaaagataaa acgatttaaa aaactagaaa tttttaactt
//
LOCUS       DAEBKH010000102         5443 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.102, whole genome shotgun sequence.
ACCESSION   DAEBKH010000102 DAEBKH010000000
VERSION     DAEBKH010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5443
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.102"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(151..909)
                     /gene="map"
                     /locus_tag="KIL20_001306"
     CDS             complement(151..909)
                     /gene="map"
                     /locus_tag="KIL20_001306"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HBD2721327.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPTDKALISCAKDALYHAIDIIHDGMRFKELSAALGEFIHTRGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILSMI"
     gene            complement(919..1662)
                     /locus_tag="KIL20_001307"
     CDS             complement(919..1662)
                     /locus_tag="KIL20_001307"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HBD2721328.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALEFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENID
                     LKNHKAKLHFYASSDVESLKNTAKIWLNL"
     gene            complement(1664..2125)
                     /locus_tag="KIL20_001308"
     CDS             complement(1664..2125)
                     /locus_tag="KIL20_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HBD2721329.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYTRPIYNTNKETKLKTIAHE
                     WKKTPYVLGGTSKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLV
                     FFKTGRGPNGMHVGIYMSKGKFIHLSTKGGVKEVELNNSYWKARYIGARRY"
     gene            complement(2134..3303)
                     /gene="nhaA"
                     /locus_tag="KIL20_001309"
     CDS             complement(2134..3303)
                     /gene="nhaA"
                     /locus_tag="KIL20_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HBD2721330.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIVAFVVAGIAILAMLVLNILGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIITAFFIPMQTKNGEAFLEEIYESLKFWLAFVILPLFAFANAG
                     VNLSNIDIGAIFSGVSVGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFAARS"
     gene            complement(3300..4448)
                     /gene="nhaA"
                     /locus_tag="KIL20_001310"
     CDS             complement(3300..4448)
                     /gene="nhaA"
                     /locus_tag="KIL20_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HBD2721331.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSVIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFAAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEHADKLAILIASFLSAIVGFIYLKIVK"
     gene            complement(4590..4772)
                     /locus_tag="KIL20_001311"
     CDS             complement(4590..4772)
                     /locus_tag="KIL20_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HBD2721332.1"
                     /translation="MVSDVSMGNANLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQVSSSSGLDIYA"
     gene            5103..5306
                     /locus_tag="KIL20_001312"
     CDS             5103..5306
                     /locus_tag="KIL20_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721333.1"
                     /translation="MLLNTPCRGIVDTNFESKRINITSTLKFQEKKEKVEAKAEKEEA
                     NKDNSDSTNTDTNKKDKLLDISA"
BASE COUNT         2109 a          982 c          654 g         1698 t
ORIGIN      
        1 cgatgtgaca ttttattcta acaacactta aactgctata aaaatatcat ttagtaactt
       61 aaattattaa agaatattac tacaatatta tttaaaaaat tttaaatttt taggatttta
      121 agaaaaaaat attattttta taatttaata tcatatcata gaaagaattt cagcacgccc
      181 attaatcaca gcaacacaat gttcataatg agccgcatta agcccatcaa tacttccagc
      241 atcccatttt ccattataat gctttggtgt tccatctttt tggcatatca taggctctat
      301 gcaaaacacc attccatttt taattttagg gccacttttt gcactcgcac ctttttctaa
      361 atagtttaaa atttcaggct ctccatgagg ctttcgtcct ataccatgcc cgcaatatcc
      421 acgaagcggg acaaaacctc ttgtatggat aaattcgcct aaagcagctg aaagttcctt
      481 aaaacgcatt ccatcatgaa taatatctat agcatggtat aacgcatctt tagcacaaga
      541 gattaaagct ttatcagtgg gtgaaacttc tcctatagca atagttcttg ctgcatcccc
      601 ataataccca tcaatcaaac ttcccacatc aagacctaaa atatcaccct ctttgataat
      661 tttatcatct ggaattccat ggatgcaaac ttgatttaaa gatgtacaaa tggcacctgg
      721 aaaaccataa agtcccttaa atgatggctt ggcgccaagg cttaaaatat aatcttctgc
      781 cattttatca atttgtttta agctcattcc tattttaatt tcattctcta aaaaatttaa
      841 agtttttgct acaatttgat ttgctattct taatttttct atttcatctg gttttttcaa
      901 ttctatcatt ttatttcctt ataaatttag ccaaatttta gcagtatttt ttaaagattc
      961 aacatcgctt gaagcataaa aatgtaattt tgctttatga tttttcaaat ctatattttc
     1021 tctttcttta agaaattcaa ctatagcatc tcctgaatga attaattttg ttttatcacc
     1081 aaaatactta cttaaagaac gtcctagtaa agggaaatga gtgcaagcga gtatcaaagc
     1141 atctggagtt gtgatatttt taaaataata ctccatagca ctttgcaaaa aatctccttc
     1201 aaaaatacct tcttcaacca taggcacaaa aagccctgta gctaaagcat ttatatttgt
     1261 atatccttga gataacaaac gcttttgata ttcttctgat ttaatggttg cttttgtcgc
     1321 aatgactaaa atttctttat ttttatcatg caaagctttt atcgttgctt caacccctgc
     1381 atcaattacg ccatatactg gaaaatgtgc ttttgctctt aaagcatcta aagcataagc
     1441 actagcagta ttgcatgcaa tgataagcat atcaatttga aattgttcaa aaaattccaa
     1501 tgcttcaaga cagaacttta taatagtatc tttatctttc accccataag gaactcttgc
     1561 ggtatctcca taatagataa tttcatcaaa aagtctagct tcataaagag attttaaaac
     1621 actaagccct cctactccgc tatcaaatac acctattttc actttaatac cttcttgctc
     1681 ctatataacg agccttccaa taagagttat ttagctcgac ttcttttact ccacctttag
     1741 tagataaatg tataaatttt cccttgctca tataaatacc aacatgcata ccatttggcc
     1801 ctctacctgt cttaaaaaac accaaatctc ctgtttgcaa ttttgattta gaaacttttc
     1861 ttccagaacc taattgagtt tttgtagtgc gaggtatgcg tatattaagc tgagctaatg
     1921 cgctctgtgt aaatcctgaa caatcagcac cttttttact agttccacct aaaacataag
     1981 gagttttttt ccattcatgt gctatagtct taagttttgt ttctttattt gtattataaa
     2041 tcggacgagt atagtttaaa ttttgataaa aactacatcc gcttataaag aatataatcg
     2101 tgatgatgaa aaaaatatgc ctcatcaatc cccttaagat cgagcagcaa agaatttaag
     2161 ataaataaaa ccccaaatcc cagaacaaaa tgaagctatg agaatagcta aattatctgc
     2221 ataattaaaa atatcgctaa cttcatacgc caagccatcg ataaacaaac tcattgtaaa
     2281 accaattcct gtaagtatac aaaccccata aagttgtttc aaatttgaac cttggggcaa
     2341 ggctgcaaat ttaaagcgga ttgccaaata agaaaacaaa aatacaccca cttgtttacc
     2401 cacaaaaagc cccaagaaaa tacctacact tacacctgaa aaaattgctc ctatatcgat
     2461 attggataaa tttaccccag cgttagcaaa agcaaataaa ggcaagataa cgaaagcgag
     2521 ccaaaatttt agactttcat agatttcttc taaaaatgct tctccatttt tagtttgcat
     2581 cggtataaaa aatgctgtta tgattccagc taaagttgca tgcacaccac tttttaaaac
     2641 actaatccaa agaataactg agcaaataaa ataaaaagac tttcttgtta ttcctaaaat
     2701 atttaaaaca agcattgcca aaatagcaat tcctgcaacg acaaaagcaa ctattgataa
     2761 ttttgtcgta taaaaaatag ctataattaa aatagcaccc acatcatcaa aaatagccaa
     2821 agaaagtaag aaaattttta aacttgatgg aatatgtttg ccacacatca ttaaaatcgc
     2881 taaggcaaac gctgtatctg tggctgtagg tatagcccaa ccttttaaag tataagcatc
     2941 tcctatattt accaaagcaa acaacatcgc aggtataagt atacccccta aagcagccat
     3001 aaaaggtaaa acaatatttt taggattttt aaaatccccg tgcaaaaatt cctttttaag
     3061 ctcaagccct atagcaaaga aaaatataga tataagccca tcatttatcc aaagtaaaaa
     3121 aggcttgtta agctcaaatt cacctacact aaatccgact tttaaattta gaaattctcg
     3181 ataatgttcg ctaaaagatc cattttgcac aagcaaagca agcaaagtac aaactataag
     3241 taaaacacca ccaaaagcct cgtttaaaac taaagttttt aatttatgta ctatattatt
     3301 catttaacaa tcttaagata aataaaacca acaatggcac ttaaaaaact agctattaaa
     3361 atagcaagtt tatccgcatg ttcaaaaata tcactatttt tataagccaa accatcaata
     3421 aacaaactca tcgtaaaacc aatgcctgtt aaaatacata taccataaaa ttttccatat
     3481 ttaatatttt caggtagttt tgcaagctta agtttgatag caataaaaca aaaagtaaaa
     3541 acacctagtt gctttcctaa aaataatcct agaataattc caaggcttac aggcgaaaat
     3601 accgaaccaa gatgcatatc tctgatatcg atcccagcat tagcaaaagc aaataaaggc
     3661 aagataaaat aaaccaccca aggatttaaa tccttaagaa cttcatgcaa ataaggtttt
     3721 ttattttttg tatcaagcgg tataaataaa gaaataatca caccagccaa agtcgcatgt
     3781 actccacttt taagcatagc tatccacaat acaacaccta ctaacacata caaagaaaga
     3841 tgggttatgt gataataatt taacaaaagc agagcaaata tacaaaacaa gcaaataata
     3901 atcgccaaag ctgaaagctg atctgtataa aataaagcaa taataacaat agcgcccaaa
     3961 tcatcaaaaa tagctaaaga aagtaaaaaa agctttaaac ttgtaggaat tttatttcct
     4021 aaaagcatca aaatgcccac tgcaaaagct atatcggttg ctgtaggtat tgcccaacct
     4081 ttcatagcaa aatcatggga ataattaata gcagcaaaaa ttaaagcagg agtaatcata
     4141 ccccctaaag ctccaaatat aggtaaagat acagctctta tatttttaag ctgtccgcgt
     4201 aaaatttcat attttaactc aagccctata catagaaaaa atatagctat caaaccatca
     4261 tttatccata aatccaacga ctttgaaatt tgaaaatgat caaatcctac tgtaaaatta
     4321 gcatgaaaaa aatctgtata aataacactt aaagaagaat ttttacataa taaggctaaa
     4381 aatgtaaaaa atataagcaa aataccaggg aaagtttcac ttaaaaccat cttctttatc
     4441 atttgcatcc ttgctcctaa ataaatatta taaaaattta atacgataaa taaaatggca
     4501 aaattataac gaaaaaatac taaagaaata attatttaaa aaaacaagct caagatacca
     4561 acaagttctt aagcttgttc ttaagatatt taagcgtaaa tatccaaacc actagagcta
     4621 gaaacttgtg gagcggaggc ttgagagaca ccttccatac cttcgatgag ttcattcatc
     4681 aatgcctcgt ttgtgtccat agattttttc aaaactgaag tattaacagc agtcattaaa
     4741 ttagcattac ccatagaaac atctgaaacc atatcatcct ccttttagat tgagtcttaa
     4801 gactttattt aaatcggatg atatttttaa aacttaatat tttttactaa actttttaaa
     4861 atttttcaag gaaaccaata tctgaaatta aaaatcataa attttttaag ataaaatcct
     4921 attttaaaaa tttttacact atgaaacaat aagcaaaata taaatggttg atacttttag
     4981 aagcaaatta aatagataaa attttacttc aataaattta aattttatct tatttatacg
     5041 atttataata taatcaaaaa ttacaactta aaaagctatt gcaattatat aggagtttgc
     5101 taatgttact taatacacct tgtaggggaa tagtagatac aaattttgaa agtaaaagaa
     5161 ttaatataac ttcaacttta aaatttcaag aaaaaaaaga aaaagtagaa gctaaagctg
     5221 agaaagaaga agcaaataaa gacaatagcg attctacaaa cacagatacc aacaaaaaag
     5281 ataaactttt ggatatatct gcttaatcta aaatatgcta taatcatctc cttgaagaat
     5341 acacaataaa tgattttttg atttttatta agcttttaaa acactaaaaa atgaaaaatt
     5401 aaaaatacaa aaacaatatc ccaaagtgca tagcttagaa gaa
//
LOCUS       DAEBKH010000103         5401 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.103, whole genome shotgun sequence.
ACCESSION   DAEBKH010000103 DAEBKH010000000
VERSION     DAEBKH010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5401
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.103"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            45..923
                     /locus_tag="KIL20_001313"
     CDS             45..923
                     /locus_tag="KIL20_001313"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HBD2721334.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALVKKMQTKFKD
                     FRVQYLEFDDNGFEIC"
     gene            948..1205
                     /locus_tag="KIL20_001314"
     CDS             948..1205
                     /locus_tag="KIL20_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HBD2721335.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEKEDKILQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            1192..3804
                     /gene="infB"
                     /locus_tag="KIL20_001315"
     CDS             1192..3804
                     /gene="infB"
                     /locus_tag="KIL20_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HBD2721336.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKVEKENAKEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVKN
                     SNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDIS
                     LDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPPKK
                     IEKKEVEEVSSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIEI
                     LAAEFGIEINIINEADEFDYVKDYEEEIDEKDLVTRAPVITIMGHVDHGKTSLLDYIR
                     KSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVVA
                     ADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGSY
                     EFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATIIV
                     QNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIAV
                     KTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSLE
                     ALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERAK
                     DKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCMV
                     TEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVGD
                     YIESYKEVQEQASL"
     gene            3801..4163
                     /gene="rbfA"
                     /locus_tag="KIL20_001316"
     CDS             3801..4163
                     /gene="rbfA"
                     /locus_tag="KIL20_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HBD2721337.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDGNLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            4153..4575
                     /gene="rimP"
                     /locus_tag="KIL20_001317"
     CDS             4153..4575
                     /gene="rimP"
                     /locus_tag="KIL20_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HBD2721338.1"
                     /translation="MNLEALCKEAELSFYDDELVSENGRKIYRIYVQKEGGVNLDDCA
                     RLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSRIEHFAKSIGELVKITTNEKEKFE
                     AKIIAVDDENITLENLENKEKTTINFNDIKKARTFIQW"
     gene            4634..4912
                     /locus_tag="KIL20_001318"
                     /pseudo
     CDS             4634..4912
                     /locus_tag="KIL20_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806291.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
     gene            4931..5266
                     /locus_tag="KIL20_001319"
                     /pseudo
     CDS             4931..5266
                     /locus_tag="KIL20_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805434.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
BASE COUNT         2121 a          618 c         1093 g         1569 t
ORIGIN      
        1 gataatcttc ccttttattt tttagatgca atttaggatg aaatttgaaa attttagttc
       61 ccgctacgag tgcgaattta gggccaggtt ttgattgttt aggacttagt ttaaagcttt
      121 ttaatgaaac tcaaatccaa aaatcaggtg tttttagcat tagtattgga ggtgagggca
      181 gtgataatat ttttcttaaa aaaaacaaca tatttgtaaa tattttttat gaaatttatg
      241 aaaaactaag tggaaaaaaa gataattttc gttttatttt tcaaaataac attcctcttt
      301 caagaggatt aggaagctct tcagctgtga ttgttggagc tattgccagt gcttattata
      361 tgagtggatt taaggtagaa aaagaacgta ttttagatga agctttaatt tatgaaaacc
      421 atccagataa tatcgctcca gctactcttg gtggttttgt gtgttctttg gttgaaaaaa
      481 ataaagttta tagtatcaaa aaagagattg ataaagattt agctgctgtg gttgtgatcc
      541 caaatttggc aatgagcacg gaacaatcac gccaagcttt ggccaaaaat ttgagtttta
      601 atgatgcggt tttcaacctt tctcatgctt catttttaac cgcttgtttt ttggagaaaa
      661 aatatgaatt tttaaaattt gcaagtcaag ataagctcca tgaaatcaat cgtatgaaaa
      721 acttacccga gctttttgaa gtgcaaaaat ttgctttaga aaataaagct ttaatgagca
      781 cactttcagg ttcaggatcg agcttttttt ctttagcttt caaagatgat gctttagctt
      841 tagtaaagaa aatgcaaaca aaatttaaag attttcgtgt gcaatattta gaatttgatg
      901 ataatggctt tgaaatttgc taaaaaatat aaaaaaaaga tataattttg aaaaaacata
      961 taccaattag aatgtgcata gtgtgtaaaa accgctttga gcaaaatatg ttatttagat
     1021 ttaaagttgt tttaggagat attgtgccta aagcagaaca tggaagaagc gggtatttat
     1081 gtcaaaattg tattgaaaaa gaagataaaa tcttgcaaaa agcattttct aaaatatgta
     1141 aaaatttaaa tactaaaatt actcagcaag gacttaagga gatattttta aatggcaaag
     1201 attagaattc atgaaatcgc aaaagaatta ggttatgata gtaaggaaat tattgaaaag
     1261 gcaaatgaat tagggcttgg aattaaaaca gcatcaaatg ctgtagaacc tgagattgcg
     1321 gcagctattt atgagtatat acaaacaaga gaaattccag aagcttttaa gaaaaatatc
     1381 aaaactccta cggcaaaaaa gcctaaaaaa gaaaatataa aagaacaaga aaagctaaat
     1441 gaatctgaaa aaaaagaacc taaaaaagaa gaaaagctta aacaagaagt taaaaaagaa
     1501 gaattaaaag ttgaaaaaga aaatgcaaaa gaagaaaaac aagaaattat tgatgctcat
     1561 aagccacaaa gccttgctag tgcaacttta gctaaaagac gcggacttgt tattgttaaa
     1621 aagaaaaaag acgaagaaga aattcaagtt aaaaaagaag aagtaaaaaa ttcaaatgat
     1681 atatctatca ataatgaaga gcgcttaagt ttaaaaacca tgttttcaaa tgctgatgag
     1741 agtttaaaga aaaagaaaaa agaaaaaaaa tcttttgtcg cgagtaaaaa agaaagtacc
     1801 gaaaaaatga attttttaga tgaacatgat tttggtgata tttctttaga tgatgaagat
     1861 gaggtagtgt tgcctgattt tagtgtaaaa gaacaagaaa aaccacaaaa tatcaataaa
     1921 aaacaaccta attttataag acaagctgtt ggaaattctg cgggttttgg acttgaaggt
     1981 ggaattcaaa gaagaagtcg taaaaaacca cctaaaaaga ttgaaaaaaa ggaagtagaa
     2041 gaagtaagta gcgttgctat ttctaaagaa attcgtgtgt atgaattcgc tgataagata
     2101 ggaaaaagca ctagtgaagt gatttcaaaa cttttcatgc ttggaatgat gacgacaaaa
     2161 aatgatttct tagatgaaga tgcgattgaa attttggctg ctgaatttgg tatagagatc
     2221 aatatcatta acgaggctga tgagtttgat tatgtaaaag actatgaaga agagattgat
     2281 gaaaaagatt tagtgactag agcacctgtg attactatca tggggcatgt tgatcatggt
     2341 aaaacttctt tgttagatta tattagaaaa tcacgcgttg caagtggtga agcagggggt
     2401 attactcagc atgtgggtgc ttatatggta gaaaaaaatg ggcgtaaaat tacttttatt
     2461 gatactccag gtcacgaagc ttttactgct atgcgtgcaa ggggtgcaag tatcactgat
     2521 attgtaatca tcgttgtagc tgcagatgat ggggtaaaac cacaaaccaa agaagcgata
     2581 aatcatgcta aggcagcagg tgtgcctatt attattgcta ttaacaaaat ggataaagaa
     2641 gcagcaaatc ctgatatggt aaaaactcaa ctcgcagaaa tggaaatcat gccagtagaa
     2701 tggggcggat cttatgaatt tgtaggggtt tcggctaaaa caggaatggg gattgaagat
     2761 ttgcttgaga tcgtgctttt acaagctgat attttagaac ttaaagccaa tccaaaaagt
     2821 tttgctaaag caagcattat agagagttct gtgcaaaaag ggcgtggtgc ggtagctact
     2881 attatcgtgc aaaatggaac acttactgta ggaagtaccg tggttgcagg tgaggcttat
     2941 gggaaagtgc gtgcgatgag tgatgatcaa ggtaaagctt taaaggaaat caaaccaggc
     3001 gaatgtgggg ttatcgtagg acttagtgaa gtagcagatg caggtgaaat tttaatcgca
     3061 gtaaaaaccg ataaagaagc aagagaatac gctaataaac gccacgaata caatcgccaa
     3121 aaagaactta gcaaatctac taaagttagc attgatgagc ttggagctaa gatcaaagaa
     3181 ggcaatctaa aagccttgcc tgttatttta aaagctgatg tgcaaggatc tttagaagcc
     3241 ttaaaagcaa gtttagaaaa acttagaaat gatgaaatca aagtgaatat cattcatagc
     3301 ggagtaggtg gaatcacgca aagtgatata gagcttgcaa gtgcgagtga aaactctatc
     3361 gtactaggtt ttaacatacg cccaacaggg gaagttaaag agcgtgctaa agataaaggc
     3421 gtagaaatta aaacctataa tgtgatttat aatcttttag atgatgtaaa agccttgctt
     3481 ggtggtatga tgagtccgat tatttctgaa gagcaattag gacaagcaga gattagacaa
     3541 gtgatcaatg tgccaaaaat cggacaaatc gcaggttgta tggtaactga aggggtgatt
     3601 aaccgtggag ccaaaattcg ccttatccgt gatggagttg tggtttatga aggcaatgta
     3661 agttcgctta aacgctttaa agatgatgct aaagaagtgg caaaaggcta tgaatgtggc
     3721 gtaggtatag aagggtgcga tgatatgaga gtgggtgatt atatagaaag ctataaagaa
     3781 gtacaggaac aagcaagtct atgaatccaa gtgagattaa aaaactacgc actgaaagta
     3841 tcttaaaaga gctgatccct gaagctttag caaatttaga tgatggaaat ttgaaaaatt
     3901 tgtgtgtagt ggatgtagag tgtaaaaaag gcagatacga tgcttttgtg tatcttgata
     3961 agatgttttt taatgttcat gagcaagaaa aaattttatc ttctttaaaa aaggcaagta
     4021 gagctttgca aaattactgc atgagtgagc agggctggta taggtgcccg aattttcact
     4081 ttaaatttga tgataggctt gagtatcaaa accatatgga tgcacttttt gaaaaaataa
     4141 aaaaggataa aaatgaatct tgaagccctt tgcaaagaag cagaacttag cttttatgat
     4201 gatgagctag taagtgaaaa tggcagaaaa atttatagaa tttatgtgca aaaagaaggt
     4261 ggggtaaatc ttgatgattg tgcaaggctt agtgaaattt tatcgcctat ttttgatgta
     4321 gaaccacctg taaatgggga gtatttttta gaagtatctt caccggggct tgaaagaaaa
     4381 ctgagtagga tagaacactt tgctaaaagt ataggtgaac ttgtgaagat cacaaccaat
     4441 gaaaaagaaa aattcgaagc aaaaatcatt gctgtagatg atgaaaatat cactttagaa
     4501 aatttagaaa ataaagaaaa aactactata aattttaatg atataaaaaa agctagaacc
     4561 ttcatacaat ggtaaaaatt tagattttta ttttatataa ttaaaataaa aacaaaaaat
     4621 caaaaggcat gcaatgctag aaaataaatg tgattggaaa ataagtaagg cagatcaaaa
     4681 tggtaatgtg tattattatt ttccaaaaga tgaagatgaa tttaaagaag cagttgtaaa
     4741 aaatggcggt atgagtgtgt atgtttatca agaaggtaaa tttatagatg aatttcacac
     4801 aaaaagtcaa ggtgataaat ggacttcttc tattcttaat tatttaaaaa ctatgagtaa
     4861 agatggagga atattttata gatattataa aaattgcaaa ttttttgcta taccaaaaaa
     4921 tacattttct aaagatgatt ttaaaattat aaaggacaat ataaataata atataccctt
     4981 aaatcaaatt ctttatggac ctccagggac aggaaaaact tatcatacta tagataaagc
     5041 tttggaaatt tttggcgaaa atttagaaag tagagatgag aaaaaagcaa aatttgatga
     5101 gtatgcaaga aagggacaaa tagtatttac tacttttcat caaagctatg gatatgaaga
     5161 atttgtagaa ggtataaagc ctgtgatgaa taatgaagca aattctcaag aaatacaata
     5221 taaaataaaa gatggaattt ttaaagattt ttgtgataag gctcttgttg taaaacaaaa
     5281 ttttaatttt aatcaaatta aggatgattt tttagatcat tgtagagaaa aaaaatcaat
     5341 aatatataaa aataaagaat ataaatttga agaaccaaat aatttaatta ctggaaattt
     5401 a
//
LOCUS       DAEBKH010000104         5397 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.104, whole genome shotgun sequence.
ACCESSION   DAEBKH010000104 DAEBKH010000000
VERSION     DAEBKH010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5397
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.104"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            190..1167
                     /locus_tag="KIL20_001320"
     CDS             190..1167
                     /locus_tag="KIL20_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HBD2721339.1"
                     /translation="MLKRLALLITLSSLMLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAQVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNTYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYQFRGDKILYVKIDSKGKMKILAEQ"
     gene            1168..2154
                     /locus_tag="KIL20_001321"
     CDS             1168..2154
                     /locus_tag="KIL20_001321"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HBD2721340.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAQEIEEFFENILILSHRPHGNENSRFIYALNDISQVKKY
                     KQDIKIHLKIDTGMHRNGICVENLEHAIDLIRSSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGKGELVLGNGKV
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            2157..2624
                     /locus_tag="KIL20_001322"
     CDS             2157..2624
                     /locus_tag="KIL20_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HBD2721341.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIIKPTVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFSNFVS"
     gene            2728..4194
                     /locus_tag="KIL20_001323"
     CDS             2728..4194
                     /locus_tag="KIL20_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HBD2721342.1"
                     /translation="MNLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHTKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIVLTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVVHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGESKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNTQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(4222..4950)
                     /locus_tag="KIL20_001324"
     CDS             complement(4222..4950)
                     /locus_tag="KIL20_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HBD2721343.1"
                     /translation="MIEVKNLQKKYGELEVLKDINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(4943..>5397)
                     /locus_tag="KIL20_001325"
     CDS             complement(4943..>5397)
                     /locus_tag="KIL20_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HBD2721344.1"
                     /translation="TPVILQLMIFAFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGI
                     NSVDKGQIEAARAMGLDYKTSMKEIILPQATKNILPALANEFISLFKETSVVGFISVI
                     DITMQSQSLQAVLYNPKPIIFTGLVYYVSVKIFSYFAKKLELRMNKND"
BASE COUNT         1822 a          699 c          912 g         1964 t
ORIGIN      
        1 aaaagacatt cctataaaaa aatttcttat cattatagac aaccttttaa aacaagcctt
       61 tatgatttat aaaaattata tcataaataa ggccgcattg ttaatataat taatattttt
      121 taagaaaaaa aatattataa tcacaaacat ttttgactta aaaaattttg aaatacctaa
      181 ggaaaaacat tgttaaaacg acttgcttta ttaattacac tttcttcatt gatgttacat
      241 gcctcagatc ttgttaaaat ttatcttaat caagggttag atgctgttgg tgtagcgatt
      301 gaaaaagaat taactcaaaa ggatttttgg ttaagtgaaa taggagataa aaatatttca
      361 cttggatatt atgatgataa tgttgctatc gtgcttacaa ataaaacaga taaaattctc
      421 cgtgtttatt cttatgagga cggaaaaata agaaaagatt ttgaacaaaa agaaataata
      481 actggattaa tgggcgataa aaaaatagaa ggagatttga aaacgccagt aggtttttat
      541 gagttaggcc gtaagtttaa tccaggtgat ccttattatg gtccctttgc ttttgccaca
      601 acttatccaa atttacttga taaagtacaa ggaaaaacag gtggtggtat ttggatccat
      661 ggctatcctt tagatggttc tagacttgat gaatttaaaa caagagggtg tattgcttta
      721 tttaataata atttagagaa atttgcacaa gttgtacaag ataaaaaagt ttttgttatg
      781 acagaagaaa aagaaaaaat tagagctaaa aaggatcaaa tagctagttt attggctgat
      841 ctttttacat ggaaactagc ttggacaaat agtgacacta atacctattt aagtttttat
      901 gatgagcaag aatttaaacg ttttgataaa atgaaatttg aacagtttgc ttccatgaaa
      961 aaatctattt tttctcgtaa agaagataaa aagattaaat tttcagatat taatatcagc
     1021 ccttatccga atttagaaaa tgaaactatg tatagaattt cattttatga ggattattac
     1081 actaaaaact atcagtttag aggcgataaa attttatacg ttaagataga tagtaaaggt
     1141 aaaatgaaaa ttttagcaga gcaataaatg tctttaataa aaattgatca aaaagcttat
     1201 gaatataatt taagacatat tgctaaaaaa atagggagtt ttcaaagatt aatttgcgtt
     1261 tttaaagata atgcatatgg acatggagct aagcttttag ctccattagc caaaaattta
     1321 ggagtttctt ttgttgctgt taagagtgaa gaagaagctc aagaaatcga agaatttttt
     1381 gagaatatat taatactatc acatcgtcct catggtaatg aaaattctcg atttatttat
     1441 gctttaaatg atatttccca agtaaaaaaa tacaagcaag atataaaaat acatctaaaa
     1501 atagatacag gcatgcatcg caatggaatt tgtgtagaaa atttagaaca tgctatagat
     1561 cttattcgaa gtagtgattt aaaacttact ggaatgttta cacattttgc tagtgcagat
     1621 gaaatggatg gaagtttttt tgttcaaaaa gaaaattttc aaaaagctaa aaagatagta
     1681 aaaaaatatt tttcaaattt attatttcat tcgcataatt ctgcagcatt atttagaggg
     1741 aaaattcccg aagatgaata ttgtagagtt gggcttgttc aatttggata tggggattca
     1801 aatttaaaaa gagttttaag cttgtatgct catagattaa gtcaaaggat tttgcaaaaa
     1861 ggacagagta taggatatgg aggcattttt actgctgcaa aggatatgga agtagcaact
     1921 tatgatttgg gttatgctga tggtcttttc cgttacaatg gaaaagggga gttggtgctt
     1981 ggaaatggaa aagtaatgct tggaaagatg tcaatggata gtttttcttg tgaaaattct
     2041 ggtgaggaaa tttgcgtgtt taaagatgct gatatttggg ctgatttttt tcatactatt
     2101 aactatgaaa ttttagtaaa attaaatcct aacattcaaa gagttctggt ataaatatgt
     2161 ttaatatagt tttagttcac cctagaatac cgcaaaatac aggtagtata ggtagaatgt
     2221 gttttaatgc tggttttaaa cttcatatca ttaaaccaac tgtttttgat atttctcaaa
     2281 aggctgttag aagggcaggg cttgattact gggataaatt agaacccatt atttgggaga
     2341 atcttgaaga atttttgaat gaaaatatga tttataaaaa tcgctttttt ttcgcaacaa
     2401 ccaagagtca aaaagcttat tttgatgcag aatttcagaa aaatgatttc ttattctttg
     2461 gaagtgagag ttatggctta cctatggaat taatgcaatt aaattgggaa aatgctataa
     2521 ctatacctat gaaatcttat ggaagaagtt taaatttagc tacaagcgtt ggtataatct
     2581 cttatgaagc tttaagacaa aattttagca attttgtttc ttaaaagttt caaatttaca
     2641 caacaactta aaacaaataa aatcataaag tcctttttat aaaaattatg ttaaagtaaa
     2701 atttagatta ttttttgagg agtttggatg aatttagata ttatgctaga ttttgccaat
     2761 aaagcgtctg atattatagc taataagatt gtcccaaata cagacattat tatggtggtt
     2821 ttgcttattg tttgtggact ttattatagc tttttaactc gctttgttca gtttcgtatg
     2881 ttgagttctg tatttaaaat tcttacagaa aaaaatgaag gacacactaa agaacatatt
     2941 tcaccttttc aggcattgat gatctcaact gcttctagag ttggtatagg aaatatcgct
     3001 ggaatttctt tggcattggc tacaggtggc gctggtgctt tattttggat gtgggttatg
     3061 gcattttttg gtggtgcctc agcatttgct gaaagtacct tagctcaagt ttataaatca
     3121 aaagatgata caggtgggtt taaaggtggt ccagcttatt atataaaaaa agccttaggc
     3181 tcacattttt ttggagcttt ttttgctttt attcttatta ttacttatgc ttatggattt
     3241 aacggacttc aaagtcaaac aatgacttca tcttttaaag tttattatga tatgtttaat
     3301 ccaaatgctg ctgtagattt tgcatcaagt tcttggccaa tgatcattgg tattgtttta
     3361 actatttttg gcgcatggat gtttttttct caccatacta aaataggtaa aattagttct
     3421 ttaattgttc cttttatggc tttagcttat gttttgcttg ctgtgattgc tgttttaatg
     3481 aattttgata aaattccttc tgtggttcat atgattttac aaagtgcttt tgattttaaa
     3541 gctatttttg gtggttttgc tggttctgct ttagttatag ggattaaaag aggacttttt
     3601 tcaaatgaag cgggtatggg ctcagcacct aatgcagctg cagcagcttt gacaagtcat
     3661 ccagctaaac aaggtgttat acaagccttt tcagttttaa ttgatgttgt tgtttgtaca
     3721 agttctggat ttttagttct tttttctatg gcatatttgg gacttggaga aagtaaaatt
     3781 gatggtggaa tgcctttagt tcaagaagct atgcgtgagt attacggtag ctttggaatc
     3841 cattttatta ctatagctat tgttcttttt gcaataactt ctttaatagg aaattattat
     3901 tatgctcaag ctaatgttaa atatttaaca aattccaaat ttgtaatgaa tttgtttaga
     3961 attacagctg tggctatgat ttttataggc tcgcaaatga atttaaaact tgcttggaat
     4021 ttggctgatt tgactatggc tttcatggca acgacaaata ttatatcttt attgctttta
     4081 ggtggtatag taaataaagt tttaaaagat tttaatacgc aacaaaaatc tggtatagat
     4141 cctaaattta atgctagcaa acttggaatt aaaaacgctg aatgttggga ttaaaattca
     4201 taagccttag tggcttatga attaatgatt taaaaccttg tttaaaaatt ctctcaatct
     4261 ttcattgcta ggattttcaa atacttcttt agggcttgca tcaacagcaa tttttccttt
     4321 atccataaaa aatatacgat tggcaacatt tctagcaaag cccatttcat gagttactac
     4381 aagcatagtt aaaccttctt ttgcaacatc tttcataatg cttagaacct cgcctatcat
     4441 ttcaggatct agagctgaag taggttcatc aaataaaata acatcaggat tcatcatcaa
     4501 gcttctagca atagctatgc gttgtttttg tccgccagag agcttatgag gcattatatt
     4561 ttctttgtct gctaaaccca ccttagcaag aagtaatttt gcttttttta tggcttcttc
     4621 ttgacttaaa attcctgttt taatgggcgt taaacataaa ttttccataa catttttatt
     4681 agcaaaaaga ttaaaatgct gaaataccat gctaactttt tgcctgatct tattaatatc
     4741 aatttcttta tcaagtatgt tttgcttatt gattaaaatt tccccactat cagctagttc
     4801 taagcgattg atacagcgta aaaatgtact ttttccgcct ccacttggac ctatgatagc
     4861 tattacatcg ccttttgaga ttgtagtgtt aatatctttt aaaacttcta attctccata
     4921 ttttttttgt aaatttttaa cttcaatcat ttttattcat cctaagttca agtttttttg
     4981 caaaatagct aaaaattttt acgcttacat aataaacaag tccagtgaaa ataataggtt
     5041 ttggattgta aagtacggct tgcaggcttt gactttgcat ggtaatatca ataacactaa
     5101 taaatcctac aacagaagtt tccttaaata aagaaataaa ttcattagct aatgcaggta
     5161 gaatgttttt agtagcctgt ggaagaataa tttctttcat tgaagttttg taatcaagtc
     5221 ccattgctct tgcagcttct atttgtccct tatctacact attaatgcca cttcttacaa
     5281 tttctgctat ataagccgag ctattaagtc ctagtgcaag aatggctgca taaaggttat
     5341 ctataaaagt aaaaattaca aaagcaaaaa tcatcaattg taaaattact ggtgttc
//
LOCUS       DAEBKH010000105         5383 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.105, whole genome shotgun sequence.
ACCESSION   DAEBKH010000105 DAEBKH010000000
VERSION     DAEBKH010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5383
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.105"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..110)
                     /locus_tag="KIL20_001326"
     CDS             complement(<1..110)
                     /locus_tag="KIL20_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HBD2721345.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERRKKQKIIIKLKAKA"
     gene            complement(95..703)
                     /gene="plsY"
                     /locus_tag="KIL20_001327"
     CDS             complement(95..703)
                     /gene="plsY"
                     /locus_tag="KIL20_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HBD2721346.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLILKFLHYDQALLWSVAVLAIFGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVISS
                     FIFNYDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            903..1928
                     /locus_tag="KIL20_001328"
     CDS             903..1928
                     /locus_tag="KIL20_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HBD2721347.1"
                     /translation="MKVKSLLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGISTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
     gene            2022..3359
                     /locus_tag="KIL20_001329"
     CDS             2022..3359
                     /locus_tag="KIL20_001329"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HBD2721348.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPANLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLTNLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEAKDIKLLEKEMKNVVEFFKKALNG"
     gene            3352..3822
                     /locus_tag="KIL20_001330"
     CDS             3352..3822
                     /locus_tag="KIL20_001330"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HBD2721349.1"
                     /translation="MAKTFKFIFYFWGAFVLVFVLDQWVKSLTLAGLRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIVVLFIYLFWQKTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            3806..4258
                     /gene="hemJ"
                     /locus_tag="KIL20_001331"
     CDS             3806..4258
                     /gene="hemJ"
                     /locus_tag="KIL20_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HBD2721350.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEIVKIQERKLYFYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSAKSGKYFRIYNEFPTIMFIIIALMMVIRPF"
     gene            complement(4255..>5383)
                     /locus_tag="KIL20_001332"
     CDS             complement(4255..>5383)
                     /locus_tag="KIL20_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HBD2721351.1"
                     /translation="YFQNLREEIKIMKDKGFDFSSMYVGGGTTLINEEELLKTLELCK
                     KLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDETLKKVARYNKFGSSKE
                     LQEKISKALGILPIFSIDLIFNLPGQSEKQLLNDLEIAKNLAPQQITTYPLMKSNLTK
                     DNIAKSLGVSIKDNEFTYYQIIREFFKDYTQNNGWSFSLEKNKLNDEYVSSHHEYLGV
                     GSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKEIIKYIFLTEIFSGKI
                     EIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFGQYLFVVLMKDFYTGM
                     DLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
BASE COUNT         1833 a          710 c          890 g         1950 t
ORIGIN      
        1 tttgctttag ctttaagctt gataataatt ttttgttttt ttcttctttc gaaatctaat
       61 ataccaatga tacacttaaa gtgaaatttt atttttatat gactttgcat tcttctttaa
      121 aaatcaatct tttaatatta ggtagatgtt tatatactat aataaaagcg ataatgaaaa
      181 cgggtgcatg tgtatgaatt tctaagtcat aattaaatat aaaagaactt ataacaaaag
      241 caagtaacgc tgctaaagaa gctagcgaag atattttaaa aatttttcca ataactaccc
      301 acacaataaa tgctgtaagc acttccaatg gaagtaaaac tatcatagcg cctgctcctg
      361 ttgctatgcc tttccctcct tcaaataaca agtaaattga aaaacagtgt ccaaaaatag
      421 ccaaaactgc gacgctccaa agcaaagctt gatcataatg aagaaatttc aagattagta
      481 aaggaatagc tgcttttgca aaatctaaaa ttattgtagc aatggcaagt ttttttgcta
      541 gtttgggatt tttttctttt actactctta aaacattggt tgctcctata ctttttgaac
      601 cttctttttt gatatcagtt ttagcaaaaa atttagctag gattagccca aaagggattg
      661 aacctaaaag atatataaaa gcgtaaatta ttaaattttc cataatatcc ttttcaaatc
      721 atcttaaaat tttaagattt ataactaaaa attatatctt atgaaaataa ataaacaaaa
      781 aataattttt aagataaaaa tagtattaat taattgtaaa tattttttaa taatatttat
      841 ttttatttaa gctctaaatg attattattt tattttaatt tatctttaat aggagtttat
      901 aaatgaaagt aaaatcattg ctaatcgcat ccttagttgc tttttcaagc ttaaatgctg
      961 caagtcttat agatgaagct aaaaattcag gtcttgttgc cttaccaaaa gatcaaaaag
     1021 gcgttgatga aattttaaaa caaaatggag taaaggctag tgaatttact cttgaaaaag
     1081 cagagcttgg caaaaagctc tattttgaac cacgtctttc aaaaagtggt atcatttctt
     1141 gtaatacctg tcataatgta ggacttggtg gaacagatgg aatcagtact gcaataggtc
     1201 ataaatggac agcaaatcct catcatttaa attcaccaac agtttataat gcagttttaa
     1261 ataatactca attttgggat ggtcgtgcag gaacattagc cgatcaagct aaaggtccaa
     1321 tccaagctga tcctgaaatg gcaactcctg ctaaacttgc agtagaaaaa atttcatctt
     1381 tgcctgaata tgtgagtgag tttaaaaaaa tctatggtaa aagcggtgta aattttgaca
     1441 atattgctga tgcaattgca aattttgaaa gaactttgat cactccatct cgttttgata
     1501 aatttttaga aggcgatgaa aaagctttaa caaaagaaga acaaaaaggc ttaaagcttt
     1561 ttatagataa aggttgtgta gcttgtcata atggtgtgaa tttaggtggc aatatgcaag
     1621 cgtttgaagt tgctggtaaa tataaatttg caaatttagg tgattttaaa ggtgatgcaa
     1681 atggcatggt aaaaactcca actttaagaa atgttgctga aactgctcca tattttcata
     1741 atggtgcgat ttggaattta aaagatgcta ttaaggaaat gggtagtgtg caacttggca
     1801 ttaaaatttc tgataaagaa gcaaaaagta ttgaaacttt cttaaaatct ttaacaggaa
     1861 caaaaccagc aattgtttat ccacaacttc ctatttctac tgaaaaaact cctaaacctg
     1921 aactataagg ttccaaacaa gctctaattt tagagcttgt ttaaatttct ttatcttagc
     1981 tttgttataa ttgtctttaa attttgctag aaaggtttgc aatgaaactt tttggaactg
     2041 atggagttcg tggaaaagcg ggtgaatttt tagatagttt tttggctatg cgtttagcaa
     2101 tggctgcggg tatttatttt aaagataaaa gtattactaa taatatctta gtaggaaaag
     2161 atacaagaag aagcggctat atgatagaaa atgctattgt ttcagggctt acttctatag
     2221 ggtataatgt tatacaaatt ggtcctatgc caactcctgc gattgcattc ttaactgaag
     2281 atatgcgttg tgatgcaggg attatgattt cagcttctca caatccttat tatgataatg
     2341 gtattaaatt ttttgatgct catggaaata aactcagtga agatatagag aaaaaaatag
     2401 aagaaattta ttttgatgat aagcttatac aagcctctaa ggtagatatg gagaaaattg
     2461 gtcaagcaaa aagaattgat gatgttatag gaaggtatat tgtttctatt aaaaattctt
     2521 ttccaaaaga tcttacttta aagtctttgc gtgtggtttt agatgtggct catggagcag
     2581 cttataaggt agcacctact gtttttaagg aattaggtgc tgaagttata gtaatgagcg
     2641 ataaacccaa tggacttaat atcaatgaaa attgtggagc tttacatcct gcaaatttag
     2701 ctgctgaggt aaagcgtttg cgtgcagatg taggctttgc ttttgatggt gatgcagatc
     2761 gtttggtggt tgtagatgaa aaaggcgaag tggctaatgg agatagttta ttaggagttt
     2821 tagcacttta tcttaaagaa caaggtaaat tacaatcaag tgttgtagcc actataatga
     2881 gtaatggtgc tttaaaagaa tttttaaata aacatggcat agaacttgat acttgtaatg
     2941 tgggcgataa atatgtgctt gaaaaattaa aagccaatgg tggaaatttt ggcggagagc
     3001 aaagtgggca tattattttt agtgattatg caaaaactgg agatggtttg atagctgctt
     3061 tgcaatttag tgctttaatg ctttctaaga aaaaatctgc aagctctatt ttgggtcaag
     3121 tcaaacctta tcctcagctt ttaaccaatc ttaaaattgc agaaaaaaaa gatttagata
     3181 aaattaaagg tttaaaagaa ttaaaaaaag atttagaaaa taaaaatatc aataccttat
     3241 ttcgctattc tggaacagaa aatttgataa gacttttact agaagccaaa gatattaagc
     3301 tcttagaaaa agaaatgaaa aatgttgtgg agttttttaa gaaagcttta aatggctaaa
     3361 acttttaaat ttatttttta tttttggggt gcctttgttt tggtttttgt ccttgatcaa
     3421 tgggtaaaat ccttaacttt agcaggactt agatggcaga gtgaatactt agatttaact
     3481 tatgctctaa atacaggcgt agctttttca atgttgagtt ttttagaaca taatttaaaa
     3541 tatttacatc ttgctttaat tgtcgtgctt tttatttatc ttttttggca aaaaacactt
     3601 ttaaaaactc atagcatagc ttttggaatg atgcttggtg ctggcgtttc aaatttattg
     3661 gatcgtttta tacacggagg tgtagtggat atgttttttt ggcataaatg gtttaatttt
     3721 gctattttta atgttgcaga tgtcatgata aatataagtg tggctttgat tttaatacaa
     3781 gaaatattta aaaaaaggaa aaaagatgac agaatggatt aatgattatt atttttggat
     3841 taaatgggtg cattatttgg catttgtttc ttggatggct ggactttttt atttacctcg
     3901 tctttttgtg tatcatgctg aacataaaga caataaaggt tttgtcgaga ttgtaaaaat
     3961 tcaagaaaga aaactttatt tttatataca aactcctgca atgattgtaa ctttaatcac
     4021 aggaagttta atgttacatg ctcataagga agttttaatg gtaggtgcgg gttttatgca
     4081 tgttaaactt acctgtgtta cacttttgat tatttttcat atacataatt attattgttt
     4141 aaaagcttta gcaaatgata cttctgctaa aagtgggaaa tactttagaa tttataatga
     4201 attcccaact ataatgttta ttattatcgc tttaatgatg gttattcgcc ccttttagtt
     4261 tgtctccgct ttaaattcca tactagcgga gttaagcgga tcaatatttt ctttcatgat
     4321 atcgatataa tctttatttt taagacgctt atcatctcta aatactgcac gcacaagatc
     4381 cattcctgtg taaaaatctt tcattaaaac cacaaaaaga tattgaccaa attcagttgc
     4441 gattaaagca ttttgatctt ttatgatggc accacttgtt ttaagcccta aaagttctat
     4501 gaaaagttct ttttcgaggt tgcaatttag agttttgttg aatttatcaa tttctatttt
     4561 ccctgaaaaa atttcagtta aaaagatata tttgataatt tcttttttat caaaacaagc
     4621 tttggctata ttagcatttt gtttttcttg tataaattta gcataatcat ttagattaaa
     4681 tgcattaatt aaaagctccc catctaaaaa gctaaaagcc ccgctgccca ctcctaggta
     4741 ttcatgatga gaactgacat attcgtcatt gagtttattt ttttccaaag aaaaactcca
     4801 accattgttt tgagtatagt ctttaaaaaa ttcgcgtatg atttgataat aagtaaattc
     4861 attatcttta atgcttactc ctaaactttt agcgatatta tctttggtaa gatttgattt
     4921 cattaaagga taggttgtga tttgttgcgg ggctaaattt ttagcaattt ctaagtcatt
     4981 taaaagttgt ttttcgcttt gtcctggaag attgaaaata agatctatac taaaaatagg
     5041 taaaattcct aaagcttttg aaattttttc ttgaagttct ttagatgaac caaatttatt
     5101 atatcttgcc acttttttta aagtttcatc atcaaaactt tgaatcccac aacttaaacg
     5161 atcaattata cctttaaaca tagaaagctt atttggatca atatgatttg gatcgctttc
     5221 gcatgaaatt tcttttatgt taaataactt tttacaaagt tctaaggttt ttaataattc
     5281 ctcttcatta atcagtgttg taccaccacc cacatacatg gagctaaaat caaaaccttt
     5341 atctttcatg attttaattt cttctctaag attttgaaaa tat
//
LOCUS       DAEBKH010000106         5356 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.106, whole genome shotgun sequence.
ACCESSION   DAEBKH010000106 DAEBKH010000000
VERSION     DAEBKH010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5356)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5356)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5356
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.106"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            123..305
                     /locus_tag="KIL20_001333"
     CDS             123..305
                     /locus_tag="KIL20_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721352.1"
                     /translation="MKKVVLISALLGAFAANVFAANTPSDVNQTHTKAHHSKAKADKK
                     HEAKTHKKTKEQTPAQ"
     gene            complement(441..515)
                     /locus_tag="KIL20_001334"
     tRNA            complement(441..515)
                     /locus_tag="KIL20_001334"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(480..482),aa:Glu,seq:ttc)
     gene            663..1226
                     /locus_tag="KIL20_001335"
     CDS             663..1226
                     /locus_tag="KIL20_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HBD2721353.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNVNLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
     gene            complement(1212..2081)
                     /gene="miaA"
                     /locus_tag="KIL20_001336"
     CDS             complement(1212..2081)
                     /gene="miaA"
                     /locus_tag="KIL20_001336"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HBD2721354.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFDAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIKTRTKEMLDNGLLDEAKILFSKFD
                     HKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALAILRMKFSIEK"
     gene            2152..3036
                     /locus_tag="KIL20_001337"
     CDS             2152..3036
                     /locus_tag="KIL20_001337"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HBD2721355.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLFVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKVGLHSIPAKFGSKATLFISAF
                     CHILAVLFWLLFVWEVWGIALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            3027..3524
                     /locus_tag="KIL20_001338"
     CDS             3027..3524
                     /locus_tag="KIL20_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721356.1"
                     /translation="MELTLFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            3521..4036
                     /locus_tag="KIL20_001339"
     CDS             3521..4036
                     /locus_tag="KIL20_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721357.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            4049..5011
                     /gene="moaA"
                     /locus_tag="KIL20_001340"
     CDS             4049..5011
                     /gene="moaA"
                     /locus_tag="KIL20_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HBD2721358.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMISDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDVLDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            5014..>5356
                     /locus_tag="KIL20_001341"
     CDS             5014..>5356
                     /locus_tag="KIL20_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HBD2721359.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQDFDPIVVITGGEPLIHYENP
                     EFIKFIQMLLKN"
BASE COUNT         1950 a          675 c          791 g         1940 t
ORIGIN      
        1 taatttaaat atatataaaa aaattatatt tttttgaaat atttttacaa aaaatatcta
       61 tttgttgatt tttaataatt acaattaatt tgcaactaaa aattattcat aaggaggaaa
      121 atatgaaaaa agttgtacta atctcagcat tactaggtgc tttcgcagct aatgtttttg
      181 cagctaatac tccaagcgat gtgaatcaaa cacatacaaa agctcatcat tcaaaagcta
      241 aagctgataa aaaacatgaa gctaaaactc acaaaaaaac aaaagagcaa acaccagctc
      301 aataatgccc agccttgata taagtctata atagacttat atcaaaagct attcgtattc
      361 tacaaaataa attattaata tttattaaat tttaatagaa aaaatgaaaa aatcgttatt
      421 ttaaaagaaa aattaaaaag tggtgaccca tacgagactc gaactcgtgt taccgccgtg
      481 aaagggcgat gtcctaaccg ctagacgaat gggccacttt taaggagtaa aaaataaaaa
      541 tgaaattgaa ttatatatat ttatttctta aaatttaatt aaatatatca aaattatgtg
      601 atttttatct ttgtttgatt ataatttcat cttcaatttt ttataaaatt ttaggattta
      661 ttatggattt ttatagtctt atttttttat cctgtgcttt aggaatggat gcttttgctg
      721 tatcactatg caaaggtttt agtgttaaaa aactacattt aaaacattat cttattgttg
      781 gaatttattt tggtggattt caagccttga tgccaactat tggttatttt ataggcataa
      841 cttttgcatc ttttattgcg agtattgatc attggatagc ttttatttta ctttctttaa
      901 taggattaaa aatgatcaaa gagtcattgg aaaatgaaaa ttgcgatagt aatgccaatc
      961 aatttggctt taaaaccatg ctagctttag caattgctac gagtatcgat gcactagcag
     1021 ttggtgtgag ttttgcattt ttaaatgtaa atttattatt agctatattt ttaataggta
     1081 ttatcacctt cattttatgc atcattgctc taaaaatagg aaataaattt ggaatttatc
     1141 ttaaaaataa agctgaactt ttaggcggat tggttttaat tatattagga gtaaaaattc
     1201 taatagaaca tttatttttc gattgaaaat ttcattctta aaatagctaa agctttatca
     1261 aattccaagg ctttactttg aaatttttta ttaaaagttc tttgtctttt ggcaagttgt
     1321 gtagtatgta tcgtgattaa attttcaagc tctttaaagg aaatttctcc atctaaatat
     1381 tctttacact ctttcaaacc tatagaattt aatgctttaa gtttatgatc aaatttagaa
     1441 aaaagaattt ttgcttcatc taaaagtcca ttatcaagca tttcttttgt tctagtttta
     1501 atacgttttt ttaaaatttc tttatcccat gcaagctcat aaatttctat atctttaagc
     1561 accccagttt tttgtgttct ttttaaaaat tcactaggaa tttctcttgt ttgttcataa
     1621 atacccagcc atttttttaa tctataagta tcattttttt ctattttata gtttggatca
     1681 atatttaata aaagagcata aatttcatcg ttatttaaag aactctttga ctctaaggtt
     1741 ttttcactta aaccatctat catagttttt aaataaaatc cagttccacc tactataatt
     1801 agaggtaaat ttctagctaa agcaaattct tttgcttttt gatattctct tatgaataac
     1861 tcaacattaa aatgttcatt cacgctcaat aaatttaccc caaagtattt tatactcgca
     1921 agatcatctt gtgaaggctt ggcacttgct atattaatct ctttataaac acaaagacta
     1981 tcaagactta aaacaacagc atcaaattct cttgctaaag tattggctat gtatgttttt
     2041 ccactcgcgg ttgttcctat taatgctatt tcaaaaaaca ttttaatatt tatcctaaaa
     2101 tttataaaaa ttttagtaaa atcatagcaa aaaatatttt aaagtagaaa aatgaacaca
     2161 ttctggataa aatttaaaga tattttagaa cttgtagtat ttaagcattc tatttttgct
     2221 ttgccttttt tattttcctc tatgattgta gcatcaaaac ttgcaaatga cactgcttgg
     2281 tttggtttta aggcattgat tttaggtatt atttgtgcgg taagtgcaag aaattttgcc
     2341 atggctacaa atcgtttaat ggatgaagat atagataagg ataatcctcg ttgtgcaaat
     2401 cgccctaatg tcagtggaaa aataggtaga aaaagcgtat ggatttttat tattattaat
     2461 gcacttattt ttatatcatg ttcttatttt attaatacct tggcctttta tttgtctttt
     2521 cctgtgcttt ttgtattggc tatttattca gcttttaagc gctttagttc tttagcgcat
     2581 ttagttttgg gattttgttt aggacttgcg cctattgcag gaagtgttat aattatgggt
     2641 gaaattcaca tttatagcgt tattttatgt ttaggtgtaa ctttttggac agctgggttt
     2701 gatctgcttt attctttgca agatatggaa tatgataaaa aagtaggact tcactctatt
     2761 cctgctaaat ttggctcaaa ggctacttta tttatatcag ctttttgtca tattttagcg
     2821 gtattatttt ggcttctttt tgtatgggaa gtttggggta tagcacttgg aaaaatagca
     2881 cttattgggg taattataag cggtattatt ttagccttgg aacataaaat tgttcacaag
     2941 aattttgctc atattgatag agcatttttt actctaaatg gttatttaag tattatcttt
     3001 tttattttta tttggattga tttattatgg aattaacact ttttaaagca ggatttgaag
     3061 ctcatttaga atgttgtgaa atagaaaata accgttttct tggagaatac ctaaaacttg
     3121 gagcaatttc tcaaatttta aaatggaaaa aacttgcttt acgcattgat tttgatgagg
     3181 gtgaaaaaat tatttttgat cttcttttaa gcctaaaaga agatatttta aggcttgaaa
     3241 attctttaga taaaaataaa gaacttatac cgcttaagca aaaaggggta atagaatctt
     3301 taaattttga atatctaaat tttttggata ctattttaga agaagataaa gaatattatt
     3361 taagatttga tttaaataat caaaaaatag ctatttttat caaagctcaa agtcaaacat
     3421 tggcaaaaat tatcaaaatt aagcctgaag acaaaatggc ttttgatgct tttgttgttg
     3481 aaattcaaag aaatatgata agaaataaga aaggccaaga atgagtgatg atgtacttta
     3541 tttagttttt ataattgtgc ttttaattgc aatgctagcc tatatgaata tcaaagaaag
     3601 agaaaataat gcaaaaatag caaaacttca aaatgtgata gaagatatta ccaaagaact
     3661 tcattatttt cgtaaagaat taggagttaa agatgatagc gaagaggatg aagactataa
     3721 aacctctctt ttaaaagaag aaattatgat tgaacttgat aaacaaatca gttcaaaaat
     3781 cactcctgtt ttaagaacac taaaaactat ggaacatatc atagaagatt ttcaaaatga
     3841 acaacaaaat cgtcttttaa atttggaaca aaaagcacaa agcatggcta aacttacacc
     3901 aaattacgat acagaagaac aaaaaataga aaatcttttc aaagaaggaa aaagcataga
     3961 acaaatcgct aaagatttac gcattggcac tggaaatgta gaacttgtct taaaatttaa
     4021 gaaattaata aaatagaatg gaaaataaat gcttatagat caattcggta gaaagataaa
     4081 ttatcttaga atttcagtta cacaaagatg taactttcgc tgcctttatt gtatgccaaa
     4141 aattcctttc gattatcagc caaaagaaaa tttattaagc ttcgaagaac tttttttatt
     4201 tgttaaagca gctatagacg aaggaattga aaaaatccgt ataacaggtg gagaaccttt
     4261 attaagaaaa gatttaagta tttttataaa aatgattagc gattataaaa gcgatattga
     4321 ccttgctata actacaaatg gatttttact aaaagacttt gctaaagacc taaaaaatgc
     4381 tggacttaaa cgacttaata tttcacttga taccctagat cacaaaaaag caaaaactct
     4441 tgcgcaaaaa gatgtattag atagtgtttt atctggaatt gatgaagctt taaatctaga
     4501 tttgaaagta aaacttaata ctgtagctct taaaaattta aacgatgatg aactgatatc
     4561 tcttttggaa tttgcaaaat caaaaaaagc tcaaattcgc tttatagaat ttatggaaaa
     4621 tactcatgct tatggtaaat tacaaggatt aaaaagagat gaaattatac aaattttgag
     4681 tcaaaaatat caaattcaac ttataaaaaa agatgaaaaa gcacctgtga gtatttacaa
     4741 ggcagatgat tatgaatttg gaattataga tcctcatagc catgaatttt gcgattcttg
     4801 caatcgcata cgcttaagtg ctgaaggctt gttaatacct tgcctttatt ttgatgaagc
     4861 attaagcata aaagaagcgg ttcgaaaagg tgatattaaa gccgctgtag aaatattaca
     4921 agaagtatta agaaataaac cagaaaaaaa taaatggagt gttgttgata atgaaacctc
     4981 atctcgtgct ttttatcaaa ctggaggtta attttgcaac ttgttgaaag tttcttaagc
     5041 attcaaggag aaggcaaata taatggaaaa ttagctattt ttatgcgttt tgctggttgc
     5101 aatttcaact gtttaggttt taatgtaaaa atatcaaaaa acgataaaac tctcattgga
     5161 tgtgacacga taagagctgt tttcacaaaa gattttaaag aaagttatga aactttaaat
     5221 gctaatgaac ttttaaaaag agtgataaaa ttaaaacaag actttgatcc tatagttgtt
     5281 atcacaggtg gagagccatt aatccattat gaaaatcctg aatttataaa atttatccaa
     5341 atgttattaa aaaata
//
LOCUS       DAEBKH010000107         5319 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.107, whole genome shotgun sequence.
ACCESSION   DAEBKH010000107 DAEBKH010000000
VERSION     DAEBKH010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5319
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.107"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..494
                     /locus_tag="KIL20_001342"
     CDS             <1..494
                     /locus_tag="KIL20_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HBD2721360.1"
                     /translation="FTRRLKLQSKELTKRAYRTAILLENSEKLARVKSKQELWEQLGN
                     QALKLLNLPIIIYPINKNNILSKPLLFFNDDKQMLKNCFSADEIAIAQWVATNKERAG
                     VCTNTLPNANAMYLPIEDGEKTKGVIGIVLKEKRPLQDFQYEILSALLNEAGVRTRDI
                     FLL"
     gene            complement(489..2462)
                     /gene="uvrB"
                     /locus_tag="KIL20_001343"
     CDS             complement(489..2462)
                     /gene="uvrB"
                     /locus_tag="KIL20_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HBD2721361.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSTTASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKDRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            2616..2846
                     /locus_tag="KIL20_001344"
     CDS             2616..2846
                     /locus_tag="KIL20_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721362.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            2836..3078
                     /locus_tag="KIL20_001345"
     CDS             2836..3078
                     /locus_tag="KIL20_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721363.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            3075..3512
                     /locus_tag="KIL20_001346"
     CDS             3075..3512
                     /locus_tag="KIL20_001346"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HBD2721364.1"
                     /translation="MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDY
                     EMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEKLFYCLNDCDYSLLDTPIYSDFK
                     SWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI"
     gene            3494..>5319
                     /locus_tag="KIL20_001347"
     CDS             3494..>5319
                     /locus_tag="KIL20_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HBD2721365.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKTKKN
                     LKAIVLKECQKPDFKTVEIKEITKYFLTPLQFELANFIVYYYASKLGFVLGFFETSPK
                     YECQKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMKKRLEVYFKDNFFLWHSKISKKKKQEYLERFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIKVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELGITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNVLKCHYCNYTSLIEQNCPSCKGEMLEARKMG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKDFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IEDYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQKNAQKLCEKLAYQFKNIKQVELV
                     GYGICGVEMLHGKYRFYLLLRSENYKALVAIENYILQFKNVSA"
BASE COUNT         1838 a          756 c          875 g         1850 t
ORIGIN      
        1 tttttactag aagattaaaa ttgcaatcta aagaactcac taaaagagct tatagaacgg
       61 ctattttgct tgaaaatagt gaaaagttag caagagtgaa aagcaaacaa gagctttggg
      121 aacaacttgg aaatcaagct ttaaaattat taaatttacc tattattatt tatcctataa
      181 ataaaaacaa tattttatcg aaacctttgt tgttttttaa cgatgataag caaatgttaa
      241 aaaattgttt tagtgctgat gagattgcta ttgctcaatg ggttgcaaca aataaagaaa
      301 gagcaggtgt ttgtacaaat accctgccta atgctaatgc tatgtattta cctatagaag
      361 atggggaaaa aactaaaggg gtcataggta tagttttaaa agaaaaacgt cccttgcaag
      421 actttcagta tgaaatttta agtgctttac ttaatgaggc aggagttaga acaagggata
      481 tatttttatt ataaatccct taatttatta atctcatctc taattgcggc agctttttca
      541 aactcaagtg cttttgctgc ttcaagcatt tgctttctta attctttgac aagttttgct
      601 ctttcgctag caggcatttt ttctagtttt ttacctttgc gataaatttc gcctaaatcc
      661 tcttcatttt tcaaactctc ttcaatatgg cgtttgactg aagttggggt aatattgtat
      721 tttttattat aagccatttg aagtttgcgg cgttcattgg tggtatccat agcttcttgc
      781 atggattttg tgattttttt gcaaaaaagc aaaaccttgc cattgacatt tctagctgct
      841 cttcccatgg tttggattaa acttgtagtg cttcttaaaa agccttcctt atctgcatcc
      901 ataatggcaa tgagtgaaac ttcaggcaaa tcaagtcctt ctctaagtaa gttaatgcca
      961 attagcatat caaaagcacc gcttcttaaa cctcttatga tttcattgcg ttctatagca
     1021 tcgatgtctg agtgcatgta tttgactttt ataccaagct ctaaataata ccttgtaagt
     1081 tcttcagcga gttttttagt tagcacggtt actaaaaccc gttcgtttct ttgtatgact
     1141 tttttagcct catcaaataa aatttcaacc tgattatcac tatcttttaa ttctattaaa
     1201 ggatcaagca gtcctgtagg acgcatgatt tgatgaaaga tgttttcttt gctaagttca
     1261 agttctaaag gtgcaggtgt agctgaaaca aaaagaaatt gacaattttt atggataaat
     1321 tcatcaaaca ttaaaggacg attatccaag gctgaaggca aacgaaaacc ataatccact
     1381 aaggtttgct ttctgcttct atctcctgca aacatacctc taaattgcgg taaagataca
     1441 tggctttcat cgactataac aagaaatttt ctatctttaa tcgcaaaata atcaaaaagc
     1501 gtataaggag tatcaccttc tttaagccct gttaaatgcc ttgcataatt ttcaacgcct
     1561 ttacacattc ctgtgcttgt aagcatctca agatcaaatt caaccctttg tttaaggcgt
     1621 tgatattcta cgagtttatt ttcatgctca aaataagcaa ggcgttcgtt aagttctgct
     1681 tttatgtctt ttatcgcttg ttttaatctt gtttcgccca cgctaaactg gcttgtagga
     1741 tagagtatga agcgttttaa atctttacct tttttatttt ctaaaacatt gtaatgatac
     1801 atagcatcaa gctcatcgcc aaaaaattca agtcttacta cttcatcttc ataataagct
     1861 ggataaatgt ctataatatc tccttgaact ctaaaatctg cacgatcaaa aaaattatca
     1921 tttcttttat aacccatatc tacaagtttt tttaaaagtt ctttttgtga aatttgcata
     1981 cctagttcaa agattaaaac catgcctatg tattcatttg gattaccaag tccataattt
     2041 gctgaaacac tagctatgca aactacatct tcataactta aaagagaagc agtagtactc
     2101 agtcttaaac gctctaagtc ttcattggtc gagctgtctt tttctatgaa aacatcagtg
     2161 cgtgggatat aggcttcagg ttgataataa tcataataag atataaaata ttctacatga
     2221 tttttagaaa aaaagccttt aaattcacta taaagttgtg cacaaaggct tttgttgtga
     2281 ctcatgataa gagtgggtat attaagttct ttaatgacat ttgccatggt aaaggttttt
     2341 ccacttcctg taacgcctag taaggtttga tatttgttgc ctttttttat actttttact
     2401 atgcctttta tggcttcttg ttgatcggga ctgggtttaa attcgctggt aagttctaac
     2461 atttttctac tttattttta tttttgaaaa aattttaaaa gaaaatgctt taattaaaaa
     2521 ttaattgaca ataaaaacct aaatttaaat ttttttctgc tacaatatca aataatattt
     2581 tccataaatt acaaatttct taagaaggca aaaatatgtt tgatgaaaaa ataatcaata
     2641 ctatgacaga taaagtaaat gaattaattg aaaagtataa cgaagtttgc gaagccaatg
     2701 aggctttaag aaatgagctt gtaagcgtta aagcacaaaa tgaagcgaaa agtaatcaaa
     2761 tcatgcgttt agaagaagaa cttaaatctc gcaatataga aagcgaagat atttacaaga
     2821 aaatagaggc tgttcttggc agataatcta aaacaagtca ttgttaatgt caatgcaaaa
     2881 gatttcattg ttaagtgcag tgaagaattt gcaaattttt tagaagatga tatcgctttg
     2941 atttctggcg gtactaaaaa aatagaactt aaacgctttg tagatgcgtt tgttaaaaaa
     3001 agttatgaaa attatatttt agaaagagaa cttaagaaac taataaaagc aatcaatgaa
     3061 gaactcccga caaaatgaat aaagctttta ctctgcttga gcttgttttt gtgattttga
     3121 ttttgggaat tttatcaagc ttatctttat cttttatcaa tactacaaaa gatgaggtta
     3181 aaattttaaa attaaaaatg gactatgaaa tgctaagctc agctcttgct ttaatgcgta
     3241 gtcaaatgag acttaaaaat ttaaattttc cagaaatttt agataatgcg caaaacaatc
     3301 aagccaaaga aaaactcttt tattgtttaa atgattgtga ttattctttg cttgatacac
     3361 ctatttattc tgattttaaa tcttggataa aaataggtaa aaatcactat agatttgcat
     3421 taaacgccaa agagatggtt gaatttattt atgattctaa agaaggcttg ttaaagtgta
     3481 taggaagttc tagatgcaaa gatctgatat aagatattat gaacttgcaa tttgtggttt
     3541 gtatttggat aatttaactt ttcatagttt tgatgaaatc aaacctttaa cacaagtatt
     3601 agtggattta aaaactaaaa aaaaccttaa agctatcgtg cttaaagaat gtcaaaaacc
     3661 tgattttaaa accgtagaaa ttaaagaaat tacaaagtat tttttaactc ctttgcaatt
     3721 tgaattggca aattttattg tttattatta tgcttcaaaa cttggttttg ttttgggctt
     3781 ttttgaaacc agtcctaaat atgaatgtca aaaaatgttt tttaaagata cccctaagct
     3841 aagcaatcaa caacaaaatg ccttaagttt tcttcaaaaa gaaaataatt ccttactttt
     3901 tgctgataca ggtagtggca agactgaaat ttatatttct ttgataaaag agtgtttaga
     3961 acagggtaag caagctttac ttttaatgcc agaaatcgca cttactccac aaatgaaaaa
     4021 gcgtttagaa gtgtatttta aggataattt tttcctgtgg cattctaaaa tttcaaagaa
     4081 aaaaaagcaa gaatatttag agcgtttttg caagggagaa gtacttttag tagcgggtgc
     4141 aagatcggct ttgtttttgc cttttagaaa tttaggactt attgtagtag atgaagaaca
     4201 tgataattct tataaggctt ctaatcagcc ttttatcaat gcaagagatt tagcgctttt
     4261 tttgggtcaa aaaaataata ttaaagtggt tttaggttct gcaaccccat ctttgacgag
     4321 tttttacaaa caaaaaagtt ttagactaaa aggaactttt tttgagagca aaaaacattt
     4381 tttatatgat gaaaatgagc ttggtataac gcctatgctt ttaagcgaat tagaaaaaag
     4441 tttaaaacat caaaaacaag ctatagtgtt tttacctaca agggctaatt ttaggcaaat
     4501 catttgcaag gattgcggag aaacgataaa atgtcctttt tgttctatcg ccatgagtat
     4561 gcataaaaag aaaaatgttt taaaatgtca ttattgtaat tatacttctt taatagagca
     4621 aaattgtcca agttgcaaag gagaaatgtt agaagctaga aaaatgggga ctgctgaact
     4681 tttagagctt ttgcaaaatg ctttgccttt agcaaaaata gcaaaatttg atagcgatga
     4741 aatcacaagc gttaaaaagc ttaatactat tttaaaagac tttaatgaaa ataagatcga
     4801 tatacttatt ggcacctcta tgcttgctaa agggcatgat tatcatagcg tggatttgag
     4861 tgtgatttta gggcttgatg agtatttgtt gcgtcctagt tttagagcga gtgaagaaac
     4921 tttagcttta gctatgcaag ttgctggtag ggcagggcgt aaaggcgaag caagagtgct
     4981 tttacaaaca aaaaatagag ctttttttga aaggtatata gaggattatg atgctttttt
     5041 aaaagatgag ttagaaaata gaaaagatct ttatcctcca tttaaacgcc ttttaagagt
     5101 tcttatagaa gataaagatc aaaaaaatgc acaaaaactt tgtgaaaaac ttgcctatca
     5161 atttaaaaat atcaaacaag tagaattagt aggctatgga atttgtggag ttgaaatgct
     5221 gcatggaaaa tatcgttttt atttattact tagaagtgaa aattataaag ctttagtggc
     5281 aattgaaaat tatattttgc aatttaaaaa tgtaagtgc
//
LOCUS       DAEBKH010000108         5275 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.108, whole genome shotgun sequence.
ACCESSION   DAEBKH010000108 DAEBKH010000000
VERSION     DAEBKH010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5275)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5275)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5275
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.108"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..339)
                     /locus_tag="KIL20_001348"
     CDS             complement(<1..339)
                     /locus_tag="KIL20_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721366.1"
                     /translation="MVKKIIILTLWVNISFAISSLELAKNLVNNSSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLRLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLI"
     gene            complement(333..1271)
                     /locus_tag="KIL20_001349"
     CDS             complement(333..1271)
                     /locus_tag="KIL20_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721367.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSSNAWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLGGNNVVVIDNNK
                     AQETNQTESVLPSQNISLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTPKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPAGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            complement(1264..1947)
                     /gene="rlmB"
                     /locus_tag="KIL20_001350"
     CDS             complement(1264..1947)
                     /gene="rlmB"
                     /locus_tag="KIL20_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HBD2721368.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKTTFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            complement(1961..2785)
                     /gene="rsmI"
                     /locus_tag="KIL20_001351"
     CDS             complement(1961..2785)
                     /gene="rsmI"
                     /locus_tag="KIL20_001351"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HBD2721369.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELPLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            complement(2788..2988)
                     /gene="rpmE"
                     /locus_tag="KIL20_001352"
     CDS             complement(2788..2988)
                     /gene="rpmE"
                     /locus_tag="KIL20_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HBD2721370.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            complement(3067..3723)
                     /locus_tag="KIL20_001353"
     CDS             complement(3067..3723)
                     /locus_tag="KIL20_001353"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HBD2721371.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKL
                     HLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVD
                     FQGEQQSHFDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL
                     "
     gene            complement(3725..4132)
                     /locus_tag="KIL20_001354"
     CDS             complement(3725..4132)
                     /locus_tag="KIL20_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721372.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(4132..4557)
                     /locus_tag="KIL20_001355"
     CDS             complement(4132..4557)
                     /locus_tag="KIL20_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HBD2721373.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSLDDEHEANPTIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLGNKIFIQKIKMIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(4557..5138)
                     /locus_tag="KIL20_001356"
     CDS             complement(4557..5138)
                     /locus_tag="KIL20_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HBD2721374.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMSKISLQ
                     DIEFSNGIKAEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(5135..>5275)
                     /locus_tag="KIL20_001357"
     CDS             complement(5135..>5275)
                     /locus_tag="KIL20_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HBD2721375.1"
                     /translation="IFCMPMGENEQNLKKNAQKIAEFCIKNGYNYSDRIHIRLWNDKE
                     GV"
BASE COUNT         1758 a          808 c          655 g         2054 t
ORIGIN      
        1 aatcaaatct gtagggataa aatatatata tccagcatct gttaaaacat cggataaaat
       61 tttaaaaaac ataacttcat cagcttttgc tttaaaattt agtcttagac tttgaggatt
      121 tgatagtgtt aaggcaatta aagaattggt ttttaatatt tgagatattt ttgcaatatc
      181 acaatttcca ttattatcta tgtaagaatt atttgaaaat aataattcta gttgagaatt
      241 tttgctagaa ttgtttacta aattttttgc taattcaaga cttgagattg caaaagatat
      301 attaacccaa agagtaagaa taataatttt ttttaccatt ctttaccttt atttaatttt
      361 acaaattcag cagctgaaat acttgtaatt tttccatctt taatcaagaa acgttttgaa
      421 attcctgcag gaaatttttg ttctttattt tcttgatcaa acattgttaa agctgcagcc
      481 cctgttaaaa ttaactgatc tttatctaaa gaaatattaa aatctttttc tttaacaaag
      541 cttgtttttt taagactttt taaatctatt aaacctatcc aaatcttggt agaggtttta
      601 aaatgtgctt cttttaaaga atcagttttt ggtgtatttg tgtcttcttg gatttgggta
      661 tttttttctt catcgagtag agttgtgtta ttttcactga tattattttc tatgcttatg
      721 tttttatcat tttcttgtaa tgagatgttt tggcttggta aaacgctctc tgtttgattt
      781 gtttcttgtg ctttattgtt gtctataaca acaacattgt ttccacctaa agattttaaa
      841 ttttcttgtg cttgtcctat gatatctata actgttgcgc tagtattatt ttgttcatct
      901 ttgaaaaaag ttttaagtgt atcaaaataa taaattccac ttcctataat cactaaaaca
      961 ataagaacaa tcaaaaaagg ccaagcgtta gaggattttt gactataagc atctagtttt
     1021 ggggttatca tttttgattt tgtttgtgga gtaggattgt tttcgttaag ataagcttca
     1081 tactcttcgt taaaatcact aaagtcgagt tcgtattctc tgctcaaaat tttaacaaaa
     1141 cctttaacat taaaacgact taaaacagca aaattctttt ctactaaagc ttcaagaaaa
     1201 tcaagttcaa tttgcgtttt tgctgcaact tcttttaaat ttaattcttg tatttttttc
     1261 caattaagca tttaacatcc tatcacaaag tattgcaaaa gcagcgctga cattaagact
     1321 atcaaaatta tttttcatcg caatgcccac acattcatcg cattttttta caattttaga
     1381 gcttaaacca aaaccctcac tacccaaaac taaaactttt ttaccattgc ttatttttac
     1441 actgtgaatt tcttttcccg agccatcact cgcataaaaa taaaaaccta cttgttttag
     1501 ttcatttatt acacttaaag catcgttgct tatcacaata ggtaaatcaa gagccgctcc
     1561 gctgcttgtg cgaattactc cttccatggc taatttttca ccaataaaaa ttaaagcccc
     1621 aacccctaaa gcataagctg tacgcgtgat agcccctata tttcctacat cgctaattcc
     1681 ataaagcata acaataaaat catttttttt gatctcattt aaattcgcaa aagaactttc
     1741 tttaatatct agcaaaaaac cttgatgatt tccacctttc gcataagctt gagcagtttt
     1801 aaaatcaagt tttttgattt taaaacctga ttttgcgatt ttggaaaaag tagttttatc
     1861 acattctttt gctaaataaa gctcattgat acagtcttta tgatattcta aaatataaaa
     1921 aaatatttgc ttcccataaa ctatcatatt aaaattttac ctaatcttga cttaaaagca
     1981 gtttttgata aatttctttt gcattttttc cattgatctt tgataataat tttgcttttg
     2041 cttttaaagg cagctctaaa tccataatat ctttttcaca aagagtattt tgcaaaaaat
     2101 tttgctcttt tgattgcaat actacaaccc attcaccgtt taaattagac ttttttaaaa
     2161 tttcagaaag ctctttagca ttgcctttaa attttttttc aaatttttta ctgatttctt
     2221 taatcaaaaa aatttctctt tggctgtcta gaatcataat ttgttctact aaagataaaa
     2281 tacgtttggg ggattcgtaa ataatacttg gataaggaaa gtttaaaatt ttttctatat
     2341 ctttttgtct ttctttgcct ttatttgcta aaaaaccaat aaagataaat tctttttgac
     2401 aaaatgccga gcttacaaga gcaactaagg ctgcatttgc acctggtaaa atttcatagg
     2461 tgatattatt ttcttgtgca aattctacca aagccttgcc aggatcacta atccctggca
     2521 ttcctgcatc gcttaaataa gctacatttt tttcaaatat ctttaaatca atacttgcta
     2581 aaacttcttt ttcattatgg gagtgtaagg ctataaattt agaaatatgt atatcagtgt
     2641 gaaatttggt atttaataac gaaatcaaag acttacttac tcttgtatct tcgcaaaaca
     2701 caagatcgca agtctttaaa agttctaagg ctctaaaaga aatatcgctt aaatttccta
     2761 tgggagtagg aataaaataa agcataatta ttgcattgcg tattttttct taaatttctc
     2821 tacacgacct gcagcatcta caattttttc actgcctgta aaaaaaggat ggcaatttga
     2881 acaaatatct actcttaatt ctgctttgtt tgactttgtt gtaaaagtat ttccacaagc
     2941 acaacttact ttgcattcta catattctgg gtgaatttct tttttcatta gttttcctta
     3001 aaaattaaaa caataagccg tgattataaa ttatttaaca taaaaaagag attaatttaa
     3061 gaaaagttaa agcaaaattt ttgaagctat agctataata gctgtttgac tttttagaat
     3121 attagagctt ttaagagaga ttttccggtt aaacaataat ctctcatcat tgttaaatcc
     3181 accttcagga cctataaaat ataattcttt ttcatcgaaa tgactttgtt gttctccttg
     3241 aaaatcaacc ataattgcat ttggaaattt ttgaacaaat tcttgagtgc tttggtggat
     3301 aattaaatcc attttagtat ttctaccgca ttgttcacaa gaagaaataa tgattttttc
     3361 aaatctttct aaatcgattt taaaatttct ttgtgaaaaa tttgtaaaaa ccaaatgtaa
     3421 cttttttact ccaagttcat ttaagaaagg tagagttttt tctaaaattt taatatctat
     3481 aatggctaag gctaagttta attcactttg ttttatattt tgtgattttt tgtttaaaaa
     3541 ttttaaagtg caagaatttc ttgttaaatt tgtgattgta tagttgtaaa gaaaattatc
     3601 ttgtaaattt ctaagattta gctccgaatt ttcctttact cttcttactt ttaaatgatt
     3661 aaagttttct ccttgaagtt gtataaactc ttctccagct tgcttgttat acaaaaattg
     3721 cattttatag atatctttct attaaaaaag gcaaaaacaa taaaaaaatt tcaaaaggta
     3781 aaatcaaaca actaatccat ctaaaagtgg catattttct aaatcttctt gcttttttaa
     3841 aacaaacaaa gtgaaaaatt gctaaggcaa aaattaagat ccaagaaaaa atcattaccc
     3901 agatattgac attcatttga aattgtttca ttgctgataa caagcaacct gtaaaaataa
     3961 tcaaagctaa aaataaataa taaattggta aaaataatcg tattctgcga ataaaaatga
     4021 attcggtttt aaaatttcct tgtgttagta taagataaaa aagcattaaa aaaccgctcg
     4081 cataaagact ataaagatgt aaagctaaaa agaattcgta actttgatcc attattttcc
     4141 tttgtttata aaatcagcta aattttgaat ttgttcatca cttaaaaaac tatggttttt
     4201 atcttttatc atttttattt tttgtataaa aattttattg cctaaggttt taatggccgt
     4261 gctgttttta ggttttaatt cccctttttc tccatgacaa gtggcgcatt tttgtttata
     4321 taaagagttg ataatagtag gattggcttc atgctcatca tctaaacttt gtgcttcatc
     4381 atctacaggt aaaggcaggt tggagtcact taattctgtt ttttcatcgt tttgttctat
     4441 ttggactact tcttgatctg tattttgagt cttggaaata tttttttcat cattagaaca
     4501 ggcagataaa actaataaaa aaaaacttaa ggcaattaaa attttagctt tttgcattaa
     4561 atctcctttg gatttataaa aatttcttca ttttttaatt tgttataaaa atctatatca
     4621 ttccattctg ctttaatgcc attggaaaat tctatgtctt gaagtgaaat ttttgacatt
     4681 agctcactat aggcatcttc tctaaaacct tgtgcatagc ctgttcttgt ttcatgaaca
     4741 atgatgcttt gtaaagtcac tccttgttct ccatttacca tttttgtttg ttttaataaa
     4801 gcatctataa gtatgaaaaa tacgcgacaa aaattttcag cacttacatt aacaggcagg
     4861 caaatccaac gacttgaata ttttttcatt tcttctaaat attttgcgtc atcatattta
     4921 aaaagagtga tagcatgatc aaaactatca ataatttggc gtatataggt ttttaaaagt
     4981 ccaaaatcat agaccattcc agcattatct aaatatttgc tttcaagtaa aacttcaact
     5041 ttgtaagaat gtccatgaat gctacttttg caacgcttag aagaacaaaa tctaacaatg
     5101 tgtgcgtttt caaattcaaa taattttctt ataatcatac accctcttta tcgttccaaa
     5161 gacgaatatg aattctatca gaataattat aaccattctt aatacaaaat tcagcaattt
     5221 tttgagcatt ttttttaagg ttttgctcat tttcacccat aggcatacaa aaaat
//
LOCUS       DAEBKH010000109         5244 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.109, whole genome shotgun sequence.
ACCESSION   DAEBKH010000109 DAEBKH010000000
VERSION     DAEBKH010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5244)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5244)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5244
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.109"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            164..1150
                     /locus_tag="KIL20_001358"
     CDS             164..1150
                     /locus_tag="KIL20_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HBD2721376.1"
                     /translation="MNKFSIVLTLLLCGSCALALDPNLEKTKSATGIDLPTAKWNLPK
                     ALNEDGTIDETKMPKNSEYSKMVILGNKILNETSKYVGPQAKDPKKRFAGNNLSCSSC
                     HANGGSVQNQSGFVGIWARFPQYNARGDKVITLADRINGCFERSMNGKRMPSDTPEMK
                     AMLTYMQWLSQGVPVGAKIEGQGLKKIDFISRAADPKKGKAIYMDKCAVCHQENGLGL
                     KNEDSAGAYYLYPPLWGDDSYNTGAGMYRLIKAASYIKENMPQGAPDLSLEDAYDVAA
                     YMNSQARPIKANRDKDFPDRKVKPLDMDVGPYDDSFFTTQHRYGPYTNMIKK"
     gene            complement(1184..1825)
                     /locus_tag="KIL20_001359"
     CDS             complement(1184..1825)
                     /locus_tag="KIL20_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HBD2721377.1"
                     /translation="MRKFFCKFVLTLVFCSSFALANNSFITLNPSLPNSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFAFAQYKDEQNG
                     KDASYSDSLSHKLADVYFVSYFLNKQRNFSNLDEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(1911..3773)
                     /locus_tag="KIL20_001360"
     CDS             complement(1911..3773)
                     /locus_tag="KIL20_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
                     /protein_id="HBD2721378.1"
                     /translation="MRLSKTLCMALLAGSTLLAPNVLMAMGGPSGAKIDWQIQGQIGA
                     IKMNPYGLSPLTAIIMDNGYVLSDIKVTIVPKPNGQTISYNVNSKMAKTYGGIPIFGL
                     YPSYLNTVKVSYTKTANGKSQKVIDEIYKITTPGVSIEPSGSTDQRGTPFENVKVLKM
                     DPKFSDRLYLVNNAPGKQSGKGSQSVWNNPVGGAMEWDENSNVFIIDTKGEIRWYFDN
                     DKLMNWDNIYNRGIMMGFHQNKDGALTWGFGQRYVKYDILGREIFNRKLPAAYIDFSH
                     AMDNMQNGHYLLRVASANTLRPDGKHVRTVRDTIVEVDENGNVVDDWRLYEILDPYRS
                     TIIKALDQGAVCLNIDASKAGKTLSDEELAKMDESDKFGDIAGTGIGRNWAHVNSVDY
                     DPSDDSIIISSRHQSAVVKIGRDKKIKWILGAHKGWNKEFQKYLLQPVDKNGKKIVCD
                     DDYSKCPGYENDNGGFDFTWTQHTGWRIDSKSNKRYIYISVFDNGDARGAEQPAFASQ
                     KYSRAVIYKIDQQNKTVEQIWEYGKNRGNEWFSPVTSLTQYEPDKDSIMVYSATAGMA
                     FDLSKGVSLGEPKPEIDEFNWGAKEPSVQIQFSGSGTGYQAMPFSVDQAFNLKK"
     gene            complement(3873..4670)
                     /gene="dsbI"
                     /locus_tag="KIL20_001361"
     CDS             complement(3873..4670)
                     /gene="dsbI"
                     /locus_tag="KIL20_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HBD2721379.1"
                     /translation="MSCIKMKDNCRKFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMEPCEQCVYIRFDMLVMAIGGMIALINPTNNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLHEWAPSWFLPTGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFIVLFAMFIA
                     YVLDKNKLNAKIFALVIVILVLVLKFIGEPKNPNQNIASLNHLNQVV"
     gene            complement(4901..5244)
                     /locus_tag="KIL20_001362"
                     /pseudo
     CDS             complement(4901..5244)
                     /locus_tag="KIL20_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908624.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide isomerase"
BASE COUNT         1795 a          900 c          762 g         1787 t
ORIGIN      
        1 actttatttt tgctttaaat atttataagt tctattttaa atataaatga atattatttt
       61 aaggtttaaa gcttttttct taaaatgtaa ttaggtttta ttgacttttt ctaaataaag
      121 tcttatactg aatttaaatt acgcaaaata aggaggaaaa ttgatgaata aattttctat
      181 agttttaact ttgttgttat gtggaagttg tgctttagcc ttagatccaa atttggaaaa
      241 aaccaagagt gcaacaggta ttgacctgcc tactgctaaa tggaatttgc ctaaggcttt
      301 aaatgaagat ggcactatag atgaaactaa aatgccaaaa aattcagaat atagcaaaat
      361 ggttatttta ggaaataaaa ttcttaatga aacaagcaaa tatgtgggtc cacaggccaa
      421 agatcctaaa aaaagatttg cgggaaataa tctttcttgt tcaagctgtc atgctaatgg
      481 tggaagtgtg caaaatcaat cgggttttgt aggaatttgg gcaagatttc cacaatataa
      541 tgccagagga gataaagtaa ttaccttagc agataggatc aatggctgtt ttgaacgctc
      601 tatgaatggc aaaagaatgc ctagcgatac acctgaaatg aaagccatgc taacttatat
      661 gcaatggtta tctcaaggag ttccagtagg agctaagata gaagggcagg gacttaagaa
      721 gatagatttt atctcaagag cagctgatcc taaaaaaggt aaggcaattt atatggataa
      781 atgtgccgtt tgtcatcaag aaaatggctt agggcttaaa aatgaggata gcgcaggggc
      841 gtattatctt tatccaccac tttggggtga tgatagttat aatacaggag ctggaatgta
      901 tcgtcttatc aaagctgctt cttatattaa agaaaatatg cctcaaggtg cgcctgactt
      961 aagtcttgaa gatgcttatg atgtagcagc ttacatgaat tcacaagctc gccctattaa
     1021 agcaaataga gataaagact ttccagatag aaaggttaag cctttagata tggatgtagg
     1081 accttatgat gatagctttt ttacaaccca acatcgctat ggaccttata caaatatgat
     1141 caaaaaataa ttttaaggca atttttattg ccttaaaaat ttattatttc atattgctta
     1201 attttttaac tagatcttct aaatcttgca ttgaattgat tgcgcttggg ttaatttgat
     1261 attttccatt aacaacaaaa gcaggggtgc cataggtttt agctatatca ttagctcttt
     1321 gaaactcgct taaaatttct ttagcttttg gggtatttaa aaaatttaat acttcatttt
     1381 tatttacatt catagccttt aagcctatgt cgtaaaattc atctaaattt gaaaaatttc
     1441 tttgcttgtt taaaaaataa gaaacaaaat aaacatcagc aagtttatga gataaactat
     1501 cagaataact cgcatcttta ccattttgct catctttgta ttgagcaaag gcaaaaagct
     1561 cattcatttc tttggaaaat tccccattca ttaaacttac aggatagagt ttaaaatgta
     1621 aatttggaaa agcttctctt agtttttcaa gagttccaaa tttatgatga ttataacaat
     1681 gtatacattt ataagaaaat gcttctatta cactattttc agagttgggt aaacttggat
     1741 taagggtaat aaaactatta tttgctaatg caaaacttga acaaaataca agcgttaaaa
     1801 caaatttgca aaaaaattta cgcatattat atccttggtt aaataaaatt ttcaaagata
     1861 attttattta aaaaaaataa ataagcccaa atttattttt gggcttattg ttatttttta
     1921 agattgaatg cttgatcaac actaaaaggc attgcttggt aacccgtgcc tgaaccgcta
     1981 aattgaattt gaaccgaagg ttccttagcg ccccagttaa attcatcaat ttcaggtttt
     2041 ggttccccaa gacttacacc tttgctaaga tcaaaagcca ttccagctgt tgcgctataa
     2101 accataatag aatctttatc tggttcatat tgagttagag aagttacagg agaaaaccat
     2161 tcatttccac gatttttacc atattcccaa atttgttcca cagttttatt ttgctgatcg
     2221 attttataaa ttacagcacg agaatatttt tgacttgcaa atgcaggttg ttcagctcct
     2281 cttgcatcac cattatcaaa aacacttata taaatataac gcttgtttga tttactatca
     2341 attctccagc ctgtatgttg cgtccaagtg aaatcaaatc caccattgtc attttcataa
     2401 cctgggcatt tgctataatc atcatcacaa acaatttttt tgccattttt atctacaggt
     2461 tgcaataaat atttttgaaa ttctttattc caccctttat gtgctcctaa aatccatttt
     2521 atttttttat cacgaccaat tttaacaaca gcactttgat ggcgactaga aataataata
     2581 ctgtcatcac ttggatcata atcaacgcta tttacatgag cccaattcct acctatacct
     2641 gtacctgcta tatctccaaa tttgtcgctt tcatccattt tggcaagctc ttcatcgctt
     2701 aaagttttac ccgctttgct tgcatctata tttaaacaca ctgcaccttg atctaaagct
     2761 ttgataatgg tacttctata aggatctaaa atctcataca atctccaatc atcaacaaca
     2821 ttaccattct catctacttc tacaatagta tcacgcactg tgcgtacatg cttaccatct
     2881 ggacgcaaag tatttgctga agctactctt aataaataat gcccattttg catattgtcc
     2941 atagcatgag aaaaatctat ataggcagca ggtaatttgc gattgaaaat ttctcttcct
     3001 aagatatcat attttacata tctttgacca aatccccaag ttaaagctcc atctttgttt
     3061 tgatgaaagc ccatcataat tccacgattg taaatattat cccagttcat tagtttatcg
     3121 ttatcaaaat accatctgat ttcaccctta gtatctatga taaagacatt tgaattttca
     3181 tcccattcca tagcaccacc tacaggatta ttccatacag attgtgagcc tttgccagat
     3241 tgttttccag gagcattatt tactaaatat agcctatctg aaaattttgg atccattttt
     3301 aatactttca cattttcaaa aggagttcct ctttgatcag tacttccact tggttctatg
     3361 ctaacccctg gagttgtaat tttataaatc tcatcaatga ctttttgact tttaccattt
     3421 gcagttttag tataacttac ctttaccgta tttaaataag aaggataaag tccaaaaata
     3481 ggaattccac cgtaagtctt agccatttta gaattcacat tataagaaat agtttgacca
     3541 tttggtttag gaacaatggt tacttttata tcgcttaaga cataaccatt gtccataata
     3601 atagcggtca aaggagacaa tccataagga ttcattttaa tcgcgcctat ttgtccttga
     3661 atttgccaat ctattttcgc tccactagga ccacccatgg ccattaaaac attaggtgca
     3721 agtagggtag aacccgccaa aagtgccatg caaagagttt tgctaagtct catgatcaat
     3781 cctttaaaat tatttaagcc atcctaaaat agcttaataa aattttaata atacgcagca
     3841 aaaataattt gttgcgtatt ttaagagtat ctttaaacga cttgatttaa atgatttaaa
     3901 ctagctatat tttgatttgg attttttggt tcgcctataa atttaagcac taaaaccaaa
     3961 ataacaatca ccaatgcaaa aattttagca ttaagtttat ttttatctaa aacataggct
     4021 ataaacattg caaaaagcac aataaaacaa cataaaaatg ctataagaca gcaaattgcc
     4081 atattcataa actttaaact aggaatcaaa taccaaccat tgctataaag cccattttca
     4141 aaatcaggtg gagttcctat aaaaaatttt tgaaaagcat taagatgatt ataagcattt
     4201 tctggaacta caggggtatc catcccacat tctcctgttg gcaaaaacca actaggagcc
     4261 cactcatgca aaggtaaatt aaatggataa ataggaattt cacgacatcc atctacacct
     4321 gcaaaaggat tttcagaatg aaccacttca tgaatatgat ttaaagttag acaatgctcc
     4381 aagccaagcc aaattccata aaaagctaag ctataagaaa aaatttttat aatattattt
     4441 gtagggttga ttaatgcaat cataccgcct atagccataa caagcatatc aaatcttata
     4501 tacacacatt gttcacaagg ttccataaaa agatattctt gaaataaaaa atgtgctata
     4561 caagtaagtc ctatagtaac tataatcaaa attaaccaag gtttgcgcgt atcttgccat
     4621 ttagaaagtg aaaattttct gcaattatct ttcattttta tacaactcat ttttgtttgc
     4681 taagttcttt agtaatttca atcaaagcct ctggagagtt gattgcactt ggaatgattt
     4741 gatattttcc attaacaaca aaagcagggg tgccataatt ttgcgaaata ggattggcaa
     4801 tttcataact ttttaaaagc tctgcagcct ctggagtttt taagaaattt tccaaatcag
     4861 ccttactcac attcattgct tttaaaccga cactataaaa agcttcagga tttttaccat
     4921 tttcccatct ttgttttttc ttaaaatatg cattaaaata agctttagca actttatgag
     4981 ttaagctatt tttatccgta ggatcaattt tatttacacc atccttaaat gccgcaaaag
     5041 caaaaatttc attagcttgc cttccataat ctcccataga acttacagga taaaatttgt
     5101 aagttaaatt aggtaatttt tctttaactt tacccatggt attaaatttg tgatgatcat
     5161 aacaatgagt acagcgataa gaaaaaattt caatcaatga attatcagcg ttagcaatag
     5221 gatttttaag aattatatat tctt
//
LOCUS       DAEBKH010000110         5223 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.110, whole genome shotgun sequence.
ACCESSION   DAEBKH010000110 DAEBKH010000000
VERSION     DAEBKH010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5223)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5223)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5223
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.110"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..334)
                     /locus_tag="KIL20_001363"
     CDS             complement(<1..334)
                     /locus_tag="KIL20_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HBD2721380.1"
                     /translation="MYNPNSAIERVKNHLAYKLGQAMIDFTNNGGGYIALFKKLYKIK
                     KQHKKEQKIYQQTIQVFPQLKYPSLEACSDYEQALRYKFHLSYMLGEVLIKADVNKFK
                     DGYFFLFKN"
     gene            complement(346..1020)
                     /locus_tag="KIL20_001364"
     CDS             complement(346..1020)
                     /locus_tag="KIL20_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HBD2721381.1"
                     /translation="MQAIILCGGLGTRLKSVIKDIPKPMAPINNKPFLEFIFEYLKRQ
                     GIKEIILAVSYKYEVIQEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKFIKNEACVL
                     NGDTFFDIDLNKLKLNGGKIYLALKQMNDFDRYGTVNVDKQGFVISFEEKIFKTQGLI
                     NGGIYLLTKDIFNEFDLEKKFSFEEFLQENYKKLKARACIFDNYFIDIGVPEDYYNFI
                     TNQSHF"
     gene            complement(1008..1613)
                     /gene="gmhA2"
                     /locus_tag="KIL20_001365"
     CDS             complement(1008..1613)
                     /gene="gmhA2"
                     /locus_tag="KIL20_001365"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HBD2721382.1"
                     /translation="MENLNSYIKGHFTDSILVKEQILKDENLITLIKNASLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGANGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ"
     gene            complement(1601..2620)
                     /gene="hddA"
                     /locus_tag="KIL20_001366"
     CDS             complement(1601..2620)
                     /gene="hddA"
                     /locus_tag="KIL20_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HBD2721383.1"
                     /translation="MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNVTISLYIHCT
                     LIEREDGKIIFDSPDTNSYCEYESKEHLENDGKLDIFKSIYNRIIKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYDNKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAQILGKSWQSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALNKEQGWVQDFSFTKEGV
                     KSWRI"
     gene            complement(2617..3648)
                     /locus_tag="KIL20_001367"
     CDS             complement(2617..3648)
                     /locus_tag="KIL20_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HBD2721384.1"
                     /translation="MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIY
                     HLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFNIPIETLQ
                     TNIIGTANILENIRILKAKDGYDPIVHICSSSEVYGRAKAEVKLNEDTAFHGASPYSI
                     SKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFESTVAKQIALIEAGYQEPVI
                     KVGNLSSVRTFQDARDAIRAYYLLSLESEKGKVPCGEAFNIAGEEVFKLPEVIDILLG
                     FSTRKDIKVEQDEERLRPIDADYQMFDNTKIKSFIDWKPEIPARQMFEDLLNHWRDEI
                     KKGRIPLNR"
     gene            complement(3660..4718)
                     /locus_tag="KIL20_001368"
     CDS             complement(3660..4718)
                     /locus_tag="KIL20_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HBD2721385.1"
                     /translation="MQKDSKIYIAGHSGLVGSAILNELKQQGYKNLVFKTHFELDLTN
                     QKAVADFFEREKPEYVILAAAKAGGILANNTYRADFIYQNLMIECNVIHNAYLHKVKK
                     LLFIASTTVYPKNATLPTSEEQMLSGDLEYTNKPYAIAKISGLMLCESYNLQYNTNFI
                     AITPTNLYGNNDKFDLEKSHVLSGILRKMHLAKLLNEKRYEDLLNDLKFDSIEEAKNY
                     LKKFGVDENNVEIWGSGKPTREFLHSQDLANACLFIMNNIDFKDLKGDNTEIINTHLN
                     IGPHKNITIKELAELIKNIVGFKGKLVFNSNRPDGAMQKFTDCSKIHSLGWKHKIELE
                     DGIKMMYKWYLKEQNIRQ"
     gene            complement(4718..>5223)
                     /locus_tag="KIL20_001369"
     CDS             complement(4718..>5223)
                     /locus_tag="KIL20_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HBD2721386.1"
                     /translation="GVYIITPNKFRDLRGEIWTAFTSEAIDNLLPNGLKFIHDKFIHS
                     KHNVIRGIHGDVKTYKLATCVYGEVHQVVVDCRKDSSTYLKHERFIINQDNQQIILVP
                     AGFGNAHYVSSESAVYYYKCAYLGEYMDAHDQFTYAWNDERIGIDWPTNSPILSERDI
                     LAMSKDK"
BASE COUNT         1655 a          987 c          642 g         1939 t
ORIGIN      
        1 tatttttaaa aagaaaaaaa tacccatctt taaacttatt cacatcagct ttgattaaaa
       61 cttcacctag catataggac aaatgaaatt tatatcttaa agcttgttca taatcactac
      121 atgcttctaa acttggatat ttgagttgag gaaaaacttg tatggtttgt tgataaattt
      181 tttgctcttt tttgtgttgt tttttaattt tataaagttt tttaaataat gctatatacc
      241 cccccccatt gtttgtaaag tcaatcatag cttgacctaa tttataagct aaatgatttt
      301 ttactctttc tatagctgag tttgggttat acatagggtt ttcctttaaa aatggctttg
      361 gttggttata aaattataat aatcctcagg cacgccaata tctataaaat aattatcaaa
      421 aatacaagct ctagccttta gttttttata attttcttgc aaaaattctt caaaagaaaa
      481 ttttttctct aaatcaaatt cattaaaaat atctttagtt aaaagataaa ttccaccatt
      541 gattaaaccc tgtgttttaa atattttttc ctcaaaggaa atcacaaatc cctgcttatc
      601 aacatttact gtaccatatc tatcaaaatc attcatttgc tttaaagcaa ggtaaatttt
      661 acctccattt aactttaatt tgtttaaatc tatgtcaaaa aaagtatcgc catttaaaac
      721 acaagcttca ttttttataa attttaaagc ttcttttata gctccacctg ttcctaaagg
      781 ctctttttct atactatatt ttatttttat acctaaaaac tcatctttaa aatattcttg
      841 tatcacctca tacttatatg aaaccgctag gataatctcc tttatgcctt gccttttaag
      901 atactcaaaa ataaattcta aaaaaggttt attatttatc ggtgccatag gctttggaat
      961 gtcttttata acgcttttaa gccttgttcc taagccgcca caaagtatta ttgcttgcaa
     1021 gaaaaacctt taccgaaaag ctcttcttcg acaatagcgc aaataatatg ccctatcaaa
     1081 atatgtgctt cttgaattct tggtgtgcaa gttgaaggta cttttataca ataatcacaa
     1141 agttcattca tagccccacc attagctccg cttaagccta tacttatgat ttctttttgc
     1201 ttacaaagtt ctagagcctt taggatattt ttactatttc cgcttgtaga aattcctata
     1261 aaaacatctc ccttaacacc ttgagcttgc acttgtctag caaacaaatt ttcataacca
     1321 taatcattgc caatagctgt taaaatactt gtatctgtag taagtgcaat acttgcgatc
     1381 cctggtctat caaaataaaa tctacttaca aattcccctg cgatgtgctg tgcatctgct
     1441 gcactaccac cgtttcctgc aagcaaggtt ttattgccat ttttgtaagc ttttatgact
     1501 tctaatgaag catttttaat aagagttatc aaattctcat cttttaaaat ttgctctttt
     1561 actaaaatag aatctgtaaa atgtcctttt atataggaat ttaaattctc catgatttaa
     1621 ccccctcttt tgtaaatgaa aaatcttgca cccagccttg ttctttgttt aaagctttaa
     1681 ttaaattgta ttttttagta ggatctacaa agaaaaacat aaatccacca gctcctgctc
     1741 cactggtttt accactgtaa gctccattat ctatagcaag tttataaatt ctttcaagct
     1801 catcgttgct aacgatttct gaaatgattt tttttgactg ccaagactta cctaaaattt
     1861 gcgccaaagt atcaaaatcc gccttaaata aagcttcttt catctttata gcatcttgct
     1921 ttatggcatg catggcctca agggattttt catctccaag ttttcctttt ttatgctctt
     1981 ctatatcttt tgcttctctt gtgatatttg taaaataaag cacagttcta gcttcaagct
     2041 cactagctat ccagttttta atacgcaaag gattgacaat gactctttta ttatcataaa
     2101 attccataaa attaaagcca ccaaaagttg cggcgtattg atcttgtgct ccgcctacta
     2161 tgcctaaatc ttctctttct atctcataag caagtttagc gatttcatat tcccctaaag
     2221 gtaaattaag ccattctgca aaagctttta taacccctac aaccaaagtc gagcttccac
     2281 ccaagccact accacttggt acatctgagt atgtatgcaa agaaaaactc aaaggttttt
     2341 ttgtaaaatc ttttataatg cgattataaa tacttttaaa aatatctaat tttccatcat
     2401 tttctaaatg ctctttgctt tcgtactcac agtaagaatt tgtatcagga gaatcaaaaa
     2461 tgatttttcc atcttctctt tcgatcaaag tacaatgtat gtataaagat atagtcacat
     2521 ttaaaacata acctgtgtat ttatcacaat ataaatttat atcagttccc ccacctgcta
     2581 gaccgagacg aagaggagtt tgtgtgcgta tggttttcat ctatttaaag gaatccttcc
     2641 tttttttatc tcatctctcc aatgatttaa tagatcctca aacatttgtc tagctggaat
     2701 ttctggcttc cagtcaataa aacttttgat ttttgtgttg tcaaacattt gatagtctgc
     2761 atcaatagga cgtagtcttt cttcatcttg ttctacttta atatcttttc ttgtagaaaa
     2821 acctaaaagt atatcaataa cctcagggag tttaaaaact tcttctcctg ctatattaaa
     2881 agcttcccca caaggaactt ttcctttttc actttcaaga gaaagtagat aataagccct
     2941 tatagcatct ctggcatctt gaaaggttct tacactcgaa agatttccaa ccttgataac
     3001 aggctcttga taacccgctt caatcaaagc aatttgcttt gcaactgtac tttcaaaaaa
     3061 aacatcggaa cgtctcgggc cactatgtgt tcccattctt gtaacaaaag tgcgaatgtt
     3121 ataagcttcg ccataaaatc ttcctaaata atcggtgccg attttgctta tactataagg
     3181 acttgcaccg tgaaaagccg tatcttcatt taacttaact tctgcctttg ccctaccata
     3241 aacttcactt gaagagcaaa tatgcactat aggatcataa ccatcttttg cctttaaaat
     3301 tctaatattt tccaaaatat ttgctgttcc tattatgtta gtctgtaaag tttcaatcgg
     3361 tatattaaaa gaagtttttg gataagactg agctgctaag tgaaaaatca catcaggcct
     3421 ttgactctcg aaaagttttt gaagactaga gtaatcattt aaatctgcat aaaaaatact
     3481 gattctatct tttttattta tcctgtcact taaatgatag atattatcca taggttcttg
     3541 ccaacgcatc atacctataa catcatagtc tgtgttttct agcaagaaat ctgccatttg
     3601 agatccaact tgccctgtaa aacctgtaat taatgctgtt tttttcataa ttttttttcc
     3661 tactgtctta tattttgctc ttttaaatac catttataca tcattttaat gccatcttca
     3721 agttcaattt tatgtttcca gcctaaagaa tgaatttttg agcaatctgt aaatttctgc
     3781 attgccccat ctggacgatt tgaattaaaa actaattttc ccttaaatcc tactatattt
     3841 ttgattaatt ctgctaattc tttgatagtg atattcttat gcggacctat atttaaatga
     3901 gtattaataa tctcagtatt atcacctttt aaatctttaa aatctatatt attcatgata
     3961 aataaacaag catttgctaa atcttgacta tgtaaaaatt ctcttgtagg ctttccacta
     4021 ccccaaattt caacattatt ctcatctaca ccaaattttt ttaaataatt cttagcttct
     4081 tcaatggaat caaattttaa atcatttaat aagtcctcgt atcgcttttc atttaaaagc
     4141 ttggctaaat gcatttttct taaaattcca gacaatacat gagatttttc aagatcaaat
     4201 ttatcattat tgccatataa atttgtagga gtgattgcta taaaatttgt attgtattgc
     4261 aaattataac tttcacaaag catcaagcct gaaattttag cgattgcgta aggtttgtta
     4321 gtatactcaa gatctccact taacatttgc tcttcactag ttggcaatgt tgcattttta
     4381 ggataaaccg tagttgaagc tatgaaaagt agctttttta ctttatgtaa ataagcatta
     4441 tgaataacat tgcactctat cattaaattt tgataaataa aatcagcacg ataagtatta
     4501 ttagctagaa ttccacccgc tttagctgct gctaaaataa catactctgg cttttctctc
     4561 tcaaaaaaat cagccacagc tttttgattt gttaaatcga gctcaaagtg agttttaaaa
     4621 acaagatttt tataaccttg ttgcttaagt tcattaagta tagcactacc aacaagacca
     4681 ctatgacccg ctatataaat tttagaatct ttttgcatca tttatcctta ctcatcgcta
     4741 aaatatcacg ctctgaaagg ataggagaat ttgttggcca atctatacca attctttcat
     4801 cattccatgc ataagtaaat tgatcatgtg catccatata ttctcctaaa taagcacatt
     4861 tatagtaata cactgcactt tcactactaa cataatgagc gtttccaaaa cctgctggaa
     4921 ctaaaatgat ttgctgatta tcttgattta tgatgaatct ttcatgcttc aaataagttg
     4981 atgaatcttt tctgcaatca accacaactt gatgcacttc tccatagaca caagtagcta
     5041 acttataagt ttttacatca ccatggatac cacggataac attatgttta gaatgtatga
     5101 atttatcatg tataaatttt aatccatttg gcaaaagatt atctatagct tcacttgtaa
     5161 aagccgtcca aatttcacct cttaaatctc taaatttgtt aggagttata atatacactc
     5221 ctt
//
LOCUS       DAEBKH010000111         5192 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.111, whole genome shotgun sequence.
ACCESSION   DAEBKH010000111 DAEBKH010000000
VERSION     DAEBKH010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5192)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5192)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5192
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.111"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..727)
                     /locus_tag="KIL20_001370"
     CDS             complement(<1..727)
                     /locus_tag="KIL20_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD2721387.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELAIAKREWFKSKWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNITKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YAYIPDFKTLKSQFVNIKNKNYEC"
     gene            complement(720..1946)
                     /locus_tag="KIL20_001371"
     CDS             complement(720..1946)
                     /locus_tag="KIL20_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721388.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGISTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNY
                     HFAKELALELKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQADKHDMDKKIVK
                     VKLGKYEKVYQILNYD"
     gene            2074..2658
                     /locus_tag="KIL20_001372"
     CDS             2074..2658
                     /locus_tag="KIL20_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HBD2721389.1"
                     /translation="MQTIDQIFQTQIDIKKSIFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIVEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNISIAIDLKNLNRFEYFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFYKNFAPFEIEKL"
     gene            complement(2702..3085)
                     /locus_tag="KIL20_001373"
     CDS             complement(2702..3085)
                     /locus_tag="KIL20_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721390.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQVEDYSSSGKSDFMDILNK
                     ADEKSSGDALNSSNSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLVQQGANEQSKNNTLLNDLLNAI"
     gene            complement(3161..3496)
                     /locus_tag="KIL20_001374"
     CDS             complement(3161..3496)
                     /locus_tag="KIL20_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721391.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            complement(3486..5063)
                     /locus_tag="KIL20_001375"
     CDS             complement(3486..5063)
                     /locus_tag="KIL20_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HBD2721392.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADVLFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEFKGIGKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIAHAISPDTGSMHLGATIELGYFPQDTSNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
BASE COUNT         1891 a          903 c          613 g         1785 t
ORIGIN      
        1 agcactcgta atttttattt tttatattaa caaattgact tttaagtgtt ttaaaatctg
       61 gaatataagc ataaccgcta agcgtatcta taacgataca aagagcatgc ttttttgata
      121 acaaacgtat aatgcaatct gaattattct ttgctaaagt tttttcatat gcataattgg
      181 cattttttaa tggagaatac actctgccca tttcatcaaa taccaatcta gtaaatcccg
      241 aacaagatcc tttgaattca accttttcta ttccgaatct tttcgtaata ttaaatcttt
      301 gtgtagtttt ttcatcatct ttactaataa ctccactttg acctgaattc attaatttgt
      361 tatgattgat tacatcaaca gcaatttctc tatctatatt gatttcagtt ttgcctaaat
      421 tagcatttcc atcgccattt ttatccaaga aaatagtata tgtttgatca taacctgtag
      481 cagctgattt tataaaataa atctgccact tacttttaaa ccactctctt tttgcgatag
      541 ccaactcatc aactcttatg ccttcttgca tcatggctaa actttgggta tattggatat
      601 cattaagaat ttgtattgca ccttctaata gattgtcttt ttttaagtaa agactgccta
      661 aattaaaaac tatacctaaa atgagaatta taaacacaaa ttccaacaaa ctgaaagctt
      721 taatcatagt ttaaaatctg atatactttt tcatattttc caagttttac tttaacaatt
      781 tttttgtcca tatcatgctt atcggcttgt tttaaagctt ttaaataaaa cttattgcta
      841 ttttttattc cataaaatcg caatcttttt tgcaaacttg gggctgttgc aagctctaaa
      901 acatcttgtt tttttaattc tagtgccaat tctttagcaa aatgataatt attggcaaaa
      961 tgacgatttg gattgtttat aaaataatac aataattgat tagcgacgat taaaaagtaa
     1021 caaaatatca aaaaaattat agaacattct ataaagattt tataccttaa tcgaaaaact
     1081 ggcaatctca ccctataact ttgcattaaa gtttttataa gcaaaggagt gcaaataaca
     1141 caaaaaggca aaaaatcatc taaaaaaagt ttttgtctta aagaaagcaa caaacaaaat
     1201 acaaatgtta cgctcattaa aaaccataat aaatttttat atttttgaaa agtcaaacga
     1261 taaatagtat aaaaaaagta cacaaaaacc aaaggagaaa aacatgcagc aaaaattcct
     1321 aaggtatcta aaaaataacc tcttggacga ccacctgtat caaaaccata aaaactgata
     1381 ctcgctccaa acaaaacaag agataaggta aataaaatag catttctttt ataaatccca
     1441 aaaaagaaaa aagttaaaaa taaaatatta aaagatttat caacaaataa tactataatc
     1501 aataatatat aaaaaagcca ttttttttca tattcgtaag cacataatat agcaagggtt
     1561 aaaaaaatca ccaaagatgc ggcattaacc agtaaagcac ttgcaacagt acctggtaat
     1621 aaaacaaata acaataaaga aaaaaaagca tcaattttag ttttagtata ttttaaagct
     1681 agcaaataca aaagcaaaca acttaaaaaa tgaaaaaata aaaaaggaag ccttaaacca
     1741 aaatcatttt gcccaaaaat aaaagttcca aaatgagata tataataaag caaactatgg
     1801 gaaaaaataa gtgatttacc ctgctcacca aaataaatat cagcttcatc agcactaata
     1861 ctcagtgttg aaattccata aagcaaagcc aacaaatcaa gactaagtaa aatgatgata
     1921 agtttataat ttttgatttt ttccataatg aaaattttac aaaattaaac ttaaaatatc
     1981 aatgcaaatc atataaatat caaatatctt aaaaattaac atcaaattga ttttagtttt
     2041 tataagtata attttaaaca aaaaaaggca aaaatgcaaa ctattgatca aatttttcaa
     2101 acacaaatcg atattaaaaa atctattttc ttatcttttc tttgcccttt taaagatttt
     2161 aaatttttaa tagaaacgct aaaaaaagag catccaaaag ctgttcattt tgtctatgct
     2221 tatcgtgttt taaatgattt taatcaaatt gtagaagata aaagcgatga tggagagcct
     2281 aaaggaactt ctggaatgcc aactttaaat gttctaaggg gctatgatct tatcaatgcg
     2341 gctttaatca ctgtaagata ttttggcggt ataaaacttg gtacaggggg acttgtaaga
     2401 gcttatagcg atgcagcaaa tgccgtgatt aataattctt ctttactttc attcgaattg
     2461 aaaaaaaata tatccattgc tattgattta aaaaatttaa atcgttttga atatttttta
     2521 aaaacttatt cttttaattt cacaaaagat tttaaggatt gcaaagctat attacatatc
     2581 aaattaaatg aaaaagagga gcaagaattt gaaatttttt ataaaaattt tgcacctttt
     2641 gaaatagaga aattataaat tcttgcaagt aaatacaaaa gctccaaaat ggagcttttg
     2701 attaaattgc gttcaataaa tcatttaaca aagtattatt cttactttgt tcatttgcac
     2761 cttgttgcac aagatcattg tgaacgctag cactttgagc tctcatagac aactcacctt
     2821 cattttgtct aaaacgataa gcgtaaacat ttgacatttg agcataatta cttaaatttg
     2881 aatttgagtt ttgcgcattg ctttgaaaac tattgctaga atttaaagca tctccgcttg
     2941 acttctcatc cgccttattt aatatatcca taaaatcaga ttttccagat gaagaataat
     3001 cttcaacctg tttatccacc tgtttatact gaccactaat agcatcgtat tcatacgagc
     3061 tgatcgttct ataatttacc tgcatagttt tctcctttca aaatatgcaa aaactataca
     3121 agcaaaaagt gttccttttt tatgcaaaaa ttaatgtttt tcaatcatga tgagtaggca
     3181 aatgctccac atcaagctca ttattagcta taaattcttc cttggctttt ttacagtttt
     3241 catcacgcat tttgcggtat tcattgcgaa tcgtgatttc tttatcgctt aaaggtctat
     3301 cttctaaaaa actaatatga aaataagtat catcgctctt tgaataagtt ttataaaaat
     3361 ctatataatc aaaataatcc ttgccattat caaactctac gacctcttct atataaatcg
     3421 taggtccaaa acccttgtga ttttgcgtat agtgcccaaa acctgcgctg tattgaattc
     3481 taaatttagc catcattttc tcctaaaaat tcttgataag ttccacgaaa atccgtaagc
     3541 ttaccatttt ctaaatgcca aattctatta gcaaaagcag aaactaactc cctatcgtgg
     3601 ctgatacaaa gcactacacc tttgaaatta tacaaagctt cacccaatgc aataatactt
     3661 tcaagatcta aatggttatc aggttcgtct aaaagcaaga aattcggacg ctctagcatt
     3721 aaacgagaaa gcattaaacg atgtttttca cccccactta aacttgctgc cattttttct
     3781 tgatcgctgc cactaaaaag cattctacct aaacacttgc ggatttcatc tagatcttta
     3841 aatttttcac tcataagcca ttcataaagt ttcaaatttt cacaaattaa attacttgta
     3901 tcttgaggaa aatatccaag ctctatagtt gccccaaggt gcatagatcc agtatctgga
     3961 cttatagcat gagcgatgat ttttgccaaa gtacttttac ccacaccatt tgccccaatc
     4021 aaagcgattt tatcattttt ttctattttt aactccaagt ttgaaaatag ttgtttatca
     4081 taagccttgc ctataccttt aaattctaaa acttcattac ctatttcacg attggttcta
     4141 aacactatac taggatctct acgacttgaa attttaatct cttcaagctc tagtttttca
     4201 agtgccttag cacggctcgt agcttgtttt gccttagaag cattcgcact aaaacggcga
     4261 atgaaatttt ctaattcttc tctttctttt aaggttttat cacgtttaag ctcagcttgt
     4321 tttgccaaaa gcgttgaagc catataccaa tcatcgtaat ttcccgcaaa atcacgaatt
     4381 tgtttaaaat ccacatccaa aatccttgtg caaattttat ttaaaaaatg tctatcatga
     4441 gagataacaa ccaaagttcc ttcatgtctt aaaagctcat tttcaagcca agaaatcgcc
     4501 tctaaatcaa ggttatttgt aggctcatct aaaaaaagca catccgcacc caaaaataaa
     4561 acttgagcta gtaagacttt aaatttatcc gcactttgca aggtgctcat caaagcatca
     4621 aaatctttaa tctttaaaga acttaaaatt ttttcacaac gcgtttcaca atcataattt
     4681 ggatcttctt cagccgttat tatctcaagc tcacctaaac gctcattgat ctcatctgta
     4741 aattcctcgc tcatataaag cttttctttt tcttttaaag cctcatataa acgcttattt
     4801 gcacacatca ccgcatcttt gatggtgtag ttttcaaaag caaattgatc ctgtcctaaa
     4861 actgcgattt ttaaaccttc atcaaatact atttcaccac tacttgactc aatttctcct
     4921 gaaagaattt ttaaaaaagt cgattttcct gcaccattag caccaataag tccgtatctt
     4981 tgtcctctaa caagctttaa attaacattt tcaaataaaa gctgatttgc aaaacgcata
     5041 gtaagatttt ttacttcaac catgattttc cttaaatttt ttacttataa aaatttttaa
     5101 gaaattgtag cgaaaaaggc ttgaattttt aattttaaaa ttaaattttt tgatagttaa
     5161 aaataaattc tataatttta ttataatttt gt
//
LOCUS       DAEBKH010000112         5137 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.112, whole genome shotgun sequence.
ACCESSION   DAEBKH010000112 DAEBKH010000000
VERSION     DAEBKH010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5137)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5137)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5137
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.112"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..1142)
                     /gene="nspC"
                     /locus_tag="KIL20_001376"
     CDS             complement(<1..1142)
                     /gene="nspC"
                     /locus_tag="KIL20_001376"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HBD2721393.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQSKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAI
                     EGLHFHALCEESADALEAVLKVFKEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQMIREFSYKDYSL"
     gene            1266..2807
                     /gene="cueO"
                     /locus_tag="KIL20_001377"
     CDS             1266..2807
                     /gene="cueO"
                     /locus_tag="KIL20_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HBD2721394.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     KERIYRFEIPQDSAGTYWYHPHPHYTTSKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGK
                     SESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            2809..3030
                     /locus_tag="KIL20_001378"
     CDS             2809..3030
                     /locus_tag="KIL20_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HBD2721395.1"
                     /translation="MIKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKDGDKIALLPPVCGG"
     gene            3031..3477
                     /locus_tag="KIL20_001379"
     CDS             3031..3477
                     /locus_tag="KIL20_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HBD2721396.1"
                     /translation="MKHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGG
                     IEALSFDIYEPLLKKWFDEWQKRVDFDDISLLFAHSIGDVAVHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            3481..4671
                     /locus_tag="KIL20_001380"
     CDS             3481..4671
                     /locus_tag="KIL20_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HBD2721397.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILITTGGVSMGDFDFLKKAVKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNVEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEILENESLVDI
                     IFMP"
BASE COUNT         1830 a          800 c          830 g         1677 t
ORIGIN      
        1 cttaaagaat aatccttata agaaaattct cttatcattt gaagttcatt tttatggtct
       61 aaaagcatga gatttggaag tcttatacca ttaaaagttg tgtttttcac aatggtgtaa
      121 tgaatttgat ctaaaaaaac aattttatcg ccgattttaa gctttttatc aaaagcgtac
      181 tctcccatta catcacccgc taaacaagta tttccagtaa gtaaataggc aaattcgttt
      241 tcttttaagt ctgaaatttt ttcattttct cttgtggcta aaattctagc atttaaaact
      301 tcacttgtat aaggcatgat gatagtatct ggcatatgtg cttcgcttga agtatctaaa
      361 atggcaattt gtttttcatt ttctatgata tctactacac tagcaaccaa atttcctgtt
      421 tgccaaccta ccgcttcacc tggttcaaga taaacttgta caccatattt atcgctgaaa
      481 tttttacaca aagcaataag tttttcaaca tcatagcctt ttttggtgat gtgatgtcct
      541 cctccaaaat tcacccattt catttgccct atccatttac caaatttctc tttaaagacc
      601 tttaaaacag cttctaaagc gtcagcactt tcttcacaaa gtgcgtgaaa atgaagtcct
      661 tctatagcat ttaaatccac attttcaaaa tctttagcac gaattccaag tcttgagtat
      721 cttccacaag gattgtaaag ttcttttggg gctagagaaa attcaacatt gcaacgaaga
      781 cctaaggaat ttttttgtgt tttgctttga aatttatgaa attgagctaa agaattaaac
      841 actatatgat gagataaact ggctatttca cctatttcat cttctttaaa agcaggtgaa
      901 taagtatgaa tttctttatc catgtattct ttagcaaatt ttgcttccca aagtccgcta
      961 caagtacaac cttttaggta ttctccaaca attttcatcg ctcctgaaaa agcaaaacct
     1021 tttaaagcta aaagcacttt agcaccactt ttttcaccaa cacttgctaa aagctcacag
     1081 ttttttctta atttatcttc ttctaaaata taagctggag tttgaatttt ttcataaaac
     1141 attatttttc cttgattaaa ttgctaaaat cataacaaaa ttaaatcaaa ttttcaaaat
     1201 aaatatttac taaaactaaa aaaataatga ctataataca aaaaatcaag caaaaggaaa
     1261 aactaatgaa tagaagaaat tttttaaaat ttaatgcact tactctagca agtatgggtg
     1321 tagcctatgc aaatcctatg cacgatatgc actctatgca taaaaatcat tctataaatc
     1381 atgacttaga tacttctttt atcaactttg ctccaaaaaa tttaaaactt ttagatccaa
     1441 aacaattccc ccaaggagaa attttaaaag ccttgccttt gctcaaaaat gaaagtaaag
     1501 aaaaaaatat ttttcgtgct accctagaaa tcaaagaaaa tcatatagag cttatcaaag
     1561 gtaaaaaaac cttattttat acttacaatg gtctagtacc tgctccaaaa atagaagttt
     1621 ttgaaggaga taaacttgaa attttagtca aaaacaaact caaggaagct acaactatac
     1681 attggcatgg cgttcctgtg ccacctgatc aagatggaag cccacatgat cctatcttag
     1741 caggaaaaga aagaatatat cgttttgaaa ttcctcaaga tagcgcagga acttactggt
     1801 atcatccaca ccctcattat accacttcta aacaagtttt tatgggctta gcaggggctt
     1861 ttgtgatcaa agcaaaaaaa gatgctttaa gtcatttaaa agaaaaagat ttgatgatta
     1921 gcgatttgcg tcttgatgaa aacgctcaaa ttccgaacaa caacctaaat gattggctaa
     1981 atggtagaga aggagaattt gtactcatta atggacaatt taaacctaaa atcaaactcg
     2041 ccacaaacga acgcatacgc atttataatg ctactgcagc aagatattta aatttacgca
     2101 tacaaggagc taagtttata cttgttggta ctgatggtgg acttatagaa aaagctattt
     2161 ataaagaaga acttttctta agtcctgctt ctcgcgtaga agttttaatc gacgctccaa
     2221 aagatgggaa ttttaagcta gaaagtgctt attatgatag ggataaaatg atggtaaaag
     2281 aagaacctaa taccctattt ttagctaata ttagtctaaa aaaagaaaat gtagaacttc
     2341 caaaaaattt aaaaattttc aaaccttcag aagaacctaa ggaatttaaa gaaataatca
     2401 tgagtgaaga tcatatgcaa atgcatggta tgatgggaaa aagtgaaagc gaattaaaaa
     2461 tcgctcttgc gtctatgttt ttaatcaatg gcaaaagcta tgatttaaaa cgcattgatt
     2521 taagctccaa acttggagta gttgaagact ggatagtgat aaacaaatct cacatggatc
     2581 atcctttcca catacacggc acgcaatttg aactcatctc atcaaaactc aatggcaaag
     2641 ttcaaaaagc cgaatttaga gccttaagag atactataaa tgtgcgtcct aatgaagagt
     2701 taagacttag aatgaaacaa gattttaaag gacttagaat gtatcattgt catattttag
     2761 aacatgaaga tttaggaatg atgggaaatt tagaagtaaa ggaataaaat gataaaagtg
     2821 gaatttttag gccccataaa taaagaaaat ttagagcttg aggtaaaaaa tttaaaagaa
     2881 ttaaaagaaa ttttgcaaaa agatgagagt ttaaaagaat ggctagaact ttgtgccgta
     2941 tctttaaacg atgaaatcat ttttgatgaa aacactaagt taaaagatgg tgataaaata
     3001 gcacttttac cgccagtttg tgggggttaa atgaaacatt ttacactcta tcaaggttct
     3061 ttagatattc ctaaaattta tagccaatgg tatgaatttg ccaaggataa aaactgcggt
     3121 gctttgctga ctttttgtgg tattgtgcgt gaagaaggag gcattgaggc acttagtttt
     3181 gatatttatg aaccgctttt aaaaaaatgg tttgatgagt ggcaaaaaag agtagatttt
     3241 gatgatatta gcttgctttt tgctcactct ataggcgatg tggcggttca tgaaagctct
     3301 tattttgcag gaattttaag caaacaaaga aaattaggac ttaaacttct taatgaattt
     3361 gttgaagatt ttaaagcaag tgcacctatt tggaagtatg atgtgataaa caaagaaaga
     3421 atttatgcca aagaaagatc aaccaaactt tgcggtgcag gacttttaaa aggataaaaa
     3481 atgttaatgt cttatgaaga aagtttaaaa attttacact ctcatatcaa aacttatgaa
     3541 aagattgaaa aaatagctct tacagagtgt ttaggacgca ttttagctca agacataaaa
     3601 gcccctaaaa atcagcctga atttccaact tcggctatgg atggttatgc gatcaaattt
     3661 gaagatcaag ataagccttt aaaaatttta ggcctcacac ctgcaggcac tatgccacaa
     3721 tttagcgtgc aaaatggtac ttgtgtaaaa acctttacag gttcacttat gagtgaagga
     3781 agtgatactt tagtccctgt tgaaaatgta cgcgtagaaa atgatactct ttttatagaa
     3841 aaaaaagttc cccaagcttt tgccgtgcgt gcagtaggag aaaactataa aaaagatgaa
     3901 attttactca aaaaaggcac aaagttaaat tatagcgaaa tagctctttt ggctgaactt
     3961 ggattttttc acattagtgt gtttataaag cctattgtag gggttttaag tagtggaagt
     4021 gagatcaaag atctaggaga agccttggaa aatcctgctc aaatccgctc ttcaaatcat
     4081 atcgccatag ctaatttagc taaaaattta aattgcgata caagggtttt tccactttta
     4141 aaagatgatg aaaaagccac tttttctacc cttgaaagtg ctttgcaaag ttgtgatatt
     4201 ttgattacaa caggcggagt ttctatggga gattttgact ttttaaaaaa agctgtaaaa
     4261 gaatacgaaa tcatcatcga taaagccgac ataaaaccag gtagacatat caaaatagcc
     4321 aaggctaatg aaaaattcat catcgcctta ccaggttttc cttactcggc tatggtaatg
     4381 tttaatcttt acgcaagaga gattttaaac tcttggttac ttcagcctaa agactatatt
     4441 tgcaaagcct ttttacaagg aagctacaag aaaaaaacac cttatttgga atttgtcgct
     4501 tgtaatgtgg aatttaaaaa tggacgcatt ttagccaatc ttgaaggtaa gaaagaaggc
     4561 tctagtgcga ttataaacaa tcttaacaat aaagctgccc ttatggtagt accaaaagaa
     4621 tgtgaaattt tagaaaatga aagtttagta gatattatct ttatgcctta aaattattta
     4681 aataatttta tttcgatttt aatcaaccct aaatttcaat aagtttcaaa tttgcacctc
     4741 cttttagtga agtaattagc cctagcagag tttcaatcca ctagggtttt tagtcccttt
     4801 ttaaatttct ttatggtaaa atgctttagg aaatgcttta aaacgctttg gagttttagt
     4861 ccctttttaa atttctttat ggtaaaatta tgagttatca agtttttgtt tttaataagt
     4921 tttagtccct ttttaaattt ctttatgata aaattttttg aaacatcaac atctttaatc
     4981 atatgtttta gtcccttttt aaatttcttt atggtaaaat gaagatgagg ttgcgggttt
     5041 aataacgacg gttttagtcc ctttttaaat ttctttatgg taaaattatg gcagttttta
     5101 aaagagcttg gcggttgttt tagtcccttt ttaaatt
//
LOCUS       DAEBKH010000113         4933 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.113, whole genome shotgun sequence.
ACCESSION   DAEBKH010000113 DAEBKH010000000
VERSION     DAEBKH010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4933)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4933)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4933
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.113"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..342
                     /locus_tag="KIL20_001381"
     CDS             <1..342
                     /locus_tag="KIL20_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721398.1"
                     /translation="NDLNTSAIINLASILQSDFNLHLKDQNISFTELNSAKALIVANK
                     ENLLKLNDANLNITKEVLGEKYTELLKTINQDKITENTIKSTSVLYGIILLLCIFSLQ
                     KTARKNSIVPS"
     gene            complement(372..1073)
                     /locus_tag="KIL20_001382"
     CDS             complement(372..1073)
                     /locus_tag="KIL20_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HBD2721399.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEINYNSPNIID
                     RLSDPYSNDTQAAYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDDYDIEY
                     LYTKLNDIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSINNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(1070..2272)
                     /locus_tag="KIL20_001383"
     CDS             complement(1070..2272)
                     /locus_tag="KIL20_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HBD2721400.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGVNALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLANAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKEKK"
     gene            2375..3724
                     /locus_tag="KIL20_001384"
     CDS             2375..3724
                     /locus_tag="KIL20_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HBD2721401.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYTKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLAQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQESKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            complement(3748..4791)
                     /locus_tag="KIL20_001385"
     CDS             complement(3748..4791)
                     /locus_tag="KIL20_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HBD2721402.1"
                     /translation="MKKHILLLGLCLSLSLSAKSMSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNVLNNYPRLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
BASE COUNT         1794 a          808 c          809 g         1522 t
ORIGIN      
        1 aatgatttaa atacgagtgc tattataaat ctagcaagta tattgcagag tgattttaat
       61 ctccatttaa aagatcaaaa tatttctttt acagagttaa attcagctaa agcattgata
      121 gtagcaaaca aagaaaatct tttaaaatta aacgatgcga atttaaatat aaccaaggaa
      181 gttttaggag aaaaatatac agaactttta aagactataa atcaagacaa gattacagaa
      241 aacaccataa aatctactag tgttttatat ggcattatcc ttttgctttg tattttctca
      301 ctccaaaaaa ccgcacgaaa aaattccata gtcccaagct aggccttaaa gcttagcttg
      361 aaattttatc atcagtcctt taagtagtat tctatagtag aaaccactct tatggttttg
      421 atgtaagggg tgtttttatc tctattgttg atgctaaatt gtccttgaga agcctttttt
      481 atcttgccta gatggctgtt tgagtcttgt gcgaatttta tcgctgcatt tctagcattg
      541 agcgttgctt cttctatcat ttgtggtttt atatcattta gcttggtgta aaggtattct
      601 atatcataat catcgatttt tgttactata ccaaattttg caagacttga aatattttct
      661 agtatgcttt ttccaagttt tacgttttgc gtatagatga gtaaattcgc agtgcctatg
      721 tatcggtatg cagcttgagt gtcgttgcta taaggatcac ttaaacgatc tatgatattt
      781 ggcgagttgt agttgatctc atcttctttt acgccttgtt cttttaaaaa tttgatgata
      841 ttttctttat cttgttctag ttcttcgtat aaatttgtaa gattgttgtt tgatcttgtg
      901 aattttatag gaagtatcaa agtatccgct tcgacttctt tttgacttaa accctttacg
      961 cttacacttc tttcaagtgt tttaaaatcg cttaaagcct tgttaaatcc aaaagctaga
     1021 atcaaacttg ctaaaactat ggctaaagcc ataaagatat tatttgtttt cattttttct
     1081 cctttatttt gattagaaaa tatatcatat ttgcaaccaa tacgcaagca cacattacaa
     1141 aagcaaggat tatcggcgta tttgcgttaa tagccccaac cacaaaagaa ataagccctg
     1201 caaaaccaaa ttgcaccgtt ccaagcaccg cagaagcagt tccgctatgt tctttaaacc
     1261 ttgccatagc caaagtcgtg gtattgggtg cgatgaaacc aagcatagcg atacttgtaa
     1321 aaatactaag ttcaaaaagc aagaaatttg gatgaaaaaa ggcatttgca agtaaaatca
     1381 cagtcgatat aaacattatc atcaaagctt ttgccaaaat tttttcgctt tcgtatttta
     1441 aaaccaatct cgcattgata tttgcacaga tgacaaaacc taaagcattt accccaaaaa
     1501 gcaaggcaaa tttttgctca cttaagctaa aaaactgcgt aaaaacaaag cttgatcctg
     1561 tgatataagc aaacatcgcc gccaaagcaa aagaagcgca tagtatataa actaaaaagc
     1621 gtttatcgct taaaacaaat ttgtagcttt tcatcgcttc atgatgggaa aattttttgt
     1681 ttttaagatg aggtgcggac tcttttaaac caaaaagtat catcaaaaaa agtaaaattc
     1741 ccaaagcaaa caaagtcgca aaaatactat gccatgaaaa atactctagc aaaattcccc
     1801 caaaagttgg cgaaagcata ggagcaagag aactaaaaac catcatcaaa gcaaaaatcc
     1861 ctgcagcttc tttgatctca aacaagtcat tgacaatagc ccttgcgata accacacctg
     1921 cacaaccccc aagtgcttca aaaaatctca aagcgataaa agcataaata tcatcgataa
     1981 tcacacaaaa caaactcgaa acgatgaaga aaaatatccc caccaaagct ggaattttac
     2041 gcccaaaaat atcacttaaa ggcccatata taagctgtcc taaagcaaaa gcgataaaaa
     2101 aacttgcgat actaagttgg gttaaaaaag aattagtttg aaaactttgc tccacatgag
     2161 aaagtgcagg caaatacata tctgtagaaa gtggtgctat gcttgacatc aaggcaagga
     2221 taacgatgag tttaaattta gcaaagccgt gaattttggt gtgtttttgc atttgtaatc
     2281 ctaattattc taaaagaatg attttaacaa gtcaatctta gaataatctt tgtttttcta
     2341 tgttaaattt agagaaaaat tctaaggaaa ttttatgcaa aatttaaacc aaaatgaaca
     2401 aatcaaatgc ccaagttgtg gaagttttat cgatatcagc actgctttat atgctcaaat
     2461 tttagataaa gctaagcaag aaatgctaaa acaaaaaaaa gaatttgatg atgaggtaaa
     2521 tgctaaaaga gctgaatata ccaaagcttt aaatgattta aaaactcaaa agatagaaca
     2581 agaaaaactc ataaacgagc aagtaagcca aaagcttctt ttagaaaagc aaaaatttga
     2641 acaagaactt ctcgcgcaaa agcaaaattt ccaaaaagaa ttcagcgaga aatttaacaa
     2701 agagcatgaa aatgaaatga aaatcatgca agaagaactc gagaaaaaaa gcaaagaact
     2761 tagcgagttt ttaagcataa aggctgaaaa tgaaaggcta aaaagagagc aaaaagaaaa
     2821 tgaagaaaga ttgaaatttc aagccaaaga agaggctttt aaagaattta aagaacaaga
     2881 aagcaaaaat ttggaatttg aaagagaaaa aatgcgtctt gaatttcaaa aaagtactca
     2941 agagcaagat cttaaataca aagaactaga aacgaatttt aaaagtgtag ctcaaaagct
     3001 agaagacgca caacgcagga tagaacaagg ctcacagcaa ctccaaggcg aagcagccga
     3061 actactcata gaagaataca tacaaagtga gtatttaagc gatgaagtaa aagaagtgcc
     3121 aaaaggcgta aatggagcgg attgtctgca tatagtaaag gataattttg gaaatatttg
     3181 cggaagtatt ttatatgaga gcaaacgcac taaagaattt aataaagaat ggcttgataa
     3241 gcttaagcta gacagcatag ccgcaaaaag tgatatagcg gttttgatca caaagactat
     3301 gccaaaagat aaagaaaaaa cgcattttaa agaaggaatt ttgatctgta cttttaatga
     3361 attcaaaggt gttttagcag tgcttagaga aagcattata aacgcttata aactcaaaaa
     3421 tgccttgcaa aacaaagatg aaaaaaatca cattttatac gaatacttaa attctaagga
     3481 atttaacacg caaatcactt ttatactcaa aacttaccaa aatatgaaag aagagttaga
     3541 agctgaaaaa agggctttgc aaaatatatg gaaaaaaaga gaaagagcta tagaaaatct
     3601 aagttttaat tccactgcca tagtgagttc tttaaatgcg atatttagtg atttacaagg
     3661 tggaaatttg ataggcgaag aagggattaa aagtcttgaa aatttagcca aagatgagga
     3721 ttaattttgg gcttagccca aaattaatca ttctcctggg aagtgatttg gatttttcca
     3781 aggtccgtat tttactttta tgtattcttt agggtctaaa ttttgttgcg gtgaggcaaa
     3841 atactcaggt tttaatgatg gggatttgct ataagctgta tcaagtcctg cacgattttc
     3901 tgtagtggtt ataggcattc ttacaaaacc tgtattgaca taagctgcta tatctagtgc
     3961 atcttcatcg cttaatatag gattatccgc actcgcacca aaaggcatgg ctgattttaa
     4021 aaatcttgct aaaaatggta tcatagccat gtgtccacca tcaggataga taagtaaaga
     4081 tggatataaa tgtccgctac cttgttcgta attatcattt tttaccccaa gtcctctttc
     4141 gccatggcaa gcaacgcaat tttcttcaaa gagttttttt ccacgcacag ggtcagctgg
     4201 gcgatttgga aaattcatct tagcgaaaaa atctccttca agctttacgc cgtctttgat
     4261 gccataagct tcttttagcc atttaaaata agctaaaatt gctttcattt ctttagaatc
     4321 attaggaaat ctatgagagt cagttccacc cattccgcga attctatctt caacagagat
     4381 gattttcatc gtttctatat caagtcttgg ataattgttt aggacattta aaaatggaat
     4441 aacatatttt tttgtccctg gtaaaccatt gccgtcattg tccatgtgac aggaaataca
     4501 gtttacttcg ttgcttgtct tttttagctt gctatagggt cctagagtac tttctgtctt
     4561 gcttaaaagc tctatgccat aacggattaa atccccttgc ttaccttttg gaacatcatt
     4621 gatgcttaaa tttttatttg gccattcttg cacaggtctt ttggaaagtt ccttaaaata
     4681 ctctactcct tccttgtcgc ttaattcttc tcctactttg taatcactca tgcttttagc
     4741 actaagactc aaactaagac ataaaccaag caataaaatg tgttttttca tgattttcct
     4801 cctttttatt tgcagttcaa attgatttta gtgtattttt tcttaaatat taagcataat
     4861 aagaataatt taaataaaat taaattttag agtgttacta aaagtaatat atttttaaag
     4921 tatataatta ata
//
LOCUS       DAEBKH010000114         4926 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.114, whole genome shotgun sequence.
ACCESSION   DAEBKH010000114 DAEBKH010000000
VERSION     DAEBKH010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4926)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4926)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4926
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.114"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(35..544)
                     /locus_tag="KIL20_001386"
     CDS             complement(35..544)
                     /locus_tag="KIL20_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HBD2721403.1"
                     /translation="MHFTIFHIIAFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVSGKVQNLTKFEIRKCYLILS
                     ILNQKQVGGEIFNDKNVRNAKMQNTSVSYTIEIIDTLPGNTYKEFRANVPFPPSFNNP
                     EFYHTLKCI"
     gene            complement(544..1074)
                     /locus_tag="KIL20_001387"
     CDS             complement(544..1074)
                     /locus_tag="KIL20_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HBD2721404.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKTAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQVQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            complement(1087..2175)
                     /locus_tag="KIL20_001388"
     CDS             complement(1087..2175)
                     /locus_tag="KIL20_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HBD2721405.1"
                     /translation="MPADLNDYFNKKNGNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FVYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIAAQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSAANMN"
     gene            complement(2188..3102)
                     /gene="ilvE"
                     /locus_tag="KIL20_001389"
     CDS             complement(2188..3102)
                     /gene="ilvE"
                     /locus_tag="KIL20_001389"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HBD2721406.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKDLENAQIELLKANNFQSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQDTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     SVTKKLQDAYFDVVYGRNEKYASMLTYI"
     gene            3279..3485
                     /locus_tag="KIL20_001390"
     CDS             3279..3485
                     /locus_tag="KIL20_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HBD2721407.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITELLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKANK"
     gene            3482..3937
                     /gene="bcp"
                     /locus_tag="KIL20_001391"
     CDS             3482..3937
                     /gene="bcp"
                     /locus_tag="KIL20_001391"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HBD2721408.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVTSHEKFISKFNLKHILLSDSEKEVVKAY
                     RAWGLKKNYGKEYEGIIRSTFVIDETGKIAQIYSNVRVKDHALKVLESL"
     gene            3937..>4926
                     /locus_tag="KIL20_001392"
     CDS             3937..>4926
                     /locus_tag="KIL20_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HBD2721409.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYSDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSSVNKQILPASIEARIALYKKVVLWEKKG
                     IKFEILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYTRFSLNEESLKQNLKEG
                     FYRSTKDEMVFVEFWRFNTFFKNKWKNFEDFLKRPLSVQAEIKWRNKLFGTYNL"
BASE COUNT         1667 a          674 c          807 g         1778 t
ORIGIN      
        1 gtattttaga atttttgcta gttgatttct tgaatcaaat acattttaag gtgtgataaa
       61 attcaggatt attaaaactt ggaggaaaag gaacattagc tctaaattct ttataggtat
      121 tacctgggag tgtgtctatg atttctatag tataagaaac acttgtattt tgcattttag
      181 cgttacggac atttttatca ttgaaaattt ctcctcctac ttgtttttgg tttaatatgc
      241 taagtatcaa atagcatttt ctgatttcaa atttagtaag attttgaact tttccactta
      301 ctataacgct ctcatgtctt agatctcttg tgtaggttag tttgctaaga tcggcttgag
      361 tggtgaattg attgattgtc agaaaaatag aatatatcaa aagtgcggta aaaatagtag
      421 ctatggtata agaaatcaaa gccatttctt tctgtttgac ttttagaaag attaaaatac
      481 aaatcaaggc aaagcaaata agtaaaatga taaaagctat aatatgaaaa atcgtaaaat
      541 gcattaaaaa cactccgaaa ctaagcgtat ggtatagtta ttttcatagt taaaattttc
      601 aaaagcaatt ctttgaactt gggttgcgtt tttctttaga tctttaattt ctctactttt
      661 ttgtctaaaa gggataaatt tctttttata ttcttctatg atattatcat taggtatttt
      721 atctgcaaaa attttagctg taattttaca ttctttaaaa ttattttttg aattatttgt
      781 aatgttaaaa tcaacaatta aatcatttga gctttgtatc attttttgat ctgtaatagc
      841 ggtttttcga gttcttactt cattgtctat tagtttatac ccatagatat aaactaaaaa
      901 acaaataata atatcaaatg cgataataaa aagtgccgct ataggcctat ggcgtaaaaa
      961 tacacaaaga agtaaaacac aagtgaagag aaaaaaaact aataaaatca gcatataatc
     1021 tactaaatat aaatgagtag tgtaaaaaag cacgatttct cttagttttt ccacttgtgt
     1081 atccttttag ttcatgttgg cagcactttg ctttttagca tctttggtat caacccaaat
     1141 gtttggcact gctccacctg gagttaagaa aattttagca tcttgattga cttttaaggc
     1201 ttcattaaat tctttttgag tttcaatttg ttttaaattt agcaaagggg tgtttaagct
     1261 gtttgcaatt tctttattag aataagcttg tgcatctgct tctatcttaa cagccatagc
     1321 tttacctttg gcactgatta tggttgcatt tgcttcccct tcagctaaag cagctttttt
     1381 taaggcttct tgattagctc tttctacttc atatttagtt ctttcagcct cttgttttgc
     1441 aatttgcacg cgttcgattt gttcttttac ttttgaaggt aaaataattt ctctaagttg
     1501 tacagcgcga agttctacag gttcgtttgg ttgggcttct atggtttttc ttataccttc
     1561 ttctatttga gcggctattg tattacgatt agtaggaagt tcttcggctg tatattttcc
     1621 tacaacactt cgcactacat cacgaacaac tggatcgata attttatttt cccaatttaa
     1681 gctccaagta gctatggttt gaggaacttg caaaggattt aaacggtatt gtactgtaac
     1741 atcaatagat acaggcaatc cacgagaatc aagtacagaa atactatttt tattaataac
     1801 acctgaacct gaagataaat tttcattact tccctctata gaagcatagt tgatttgtct
     1861 tactctagta tcgattatgg ttattttttg tacaaaaggt aagaaaaagt gaagtcctgg
     1921 ttctaatgga tttgggtcat atttacctgt tgttgattta atccccattt ccccagaatt
     1981 tatcaccata aaaggttttg caacgattaa aaataagata ataataatca ccccataaac
     2041 aaatggagag aatttcccaa aacctttaaa attaaattct ggtgctttga aattgaaatt
     2101 ttgacggttg ttgtttccgt tattgttaga atttccattt tttttattga aataatcatt
     2161 caaatcagct ggcatttatt tcctttttta aatataagtt agcatagatg cgtatttttc
     2221 attgcgtcca taaactacat caaaataagc atcttgaagt tttttagtta cagatcctct
     2281 taaaccattt cctattattc ttgcatcaat attgttaata ggtgtgattt cagcggctgt
     2341 tccggtaaaa aatgcttcat cagcagtata aacttcatct cttgaaattc tttggcgaag
     2401 cacggtgata ccaagatcat gagcgatttt aagcactgta tcttgagtaa tgctttttaa
     2461 agaaaaatca tttggaggtg tgattaaaac cccatctttt acaataaaga aacattctcc
     2521 tgttccttct gcgataaaac cttcttcatc aagcattaaa gcttcttcat atcctgcttc
     2581 aatagcttca aattttgcaa tttgagagtt aagataattt gcacttgctt tagcttttcc
     2641 catgcatgat ttaacactat ttcttgcaaa agacgaaatt tttactttta tgcctttttc
     2701 taaaccttct tctccaaggt aagcacccca ttcccaagct gcaattccaa ctcttacagg
     2761 agcttttata tgataaagtc ccataactcc atcgcctaag aaaatcagag ggcggatata
     2821 gacattgctt tgaaaattgt ttgcttttaa gagttcaatt tgtgcatttt caagatcttt
     2881 ttgagaaaaa ggacaattta aaagagtaat ttttgcagac tctaaaagtc ttttggtgtg
     2941 atcttcaagt ctgaaaattg ctaagccttt atctgtttta taggctctag ttccttcaaa
     3001 aacagcattg ccataatgca aagaatgggt taaaaagtgc aaagttgcat ctttaaaatc
     3061 aactaatttt ccatccatcc aaattttatc tgctgagatc atttttttac cttttatagt
     3121 tgtttatttc ttaaaaaata ttattttaag aataaatcgg gattttatca aaaatatact
     3181 aacaataagc ttttattaaa ttaaggtttt ttgttaaaaa aaatattagg tattttttga
     3241 aataattatg aaaaattatc gttaaaaaag gagaaattat gccattagta aatatcaaat
     3301 tagcaaagcc gtctttaagc aaggaacaaa aagcggaact tatagctgat attactgaac
     3361 ttttaagcac gaaatataat aaaagtaaag aaagagttgt tgtggtttta gaagatgtgg
     3421 aaaattatga cataggcttt ggcggagaaa gtgtagaagc tatcaaagca aaggcaaata
     3481 aatgagttta aatataggag ataaggcacc tcaatttgag cttttaaatc aagatggggt
     3541 aaaaatagca ttaaaagatt ttattggcaa aaaggtgatt ttgtattttt atccaaaaga
     3601 taatacccca ggttgtacta cagaagcttg tgattttagt gcaaattatg ataaatttgg
     3661 tggtaaaaat gcagtgatta ttggtattag tcctgatagt gtgacaagtc atgaaaaatt
     3721 tatttctaaa tttaatttaa agcatatttt acttagtgat agcgaaaaag aagttgttaa
     3781 agcttataga gcttgggggc ttaagaaaaa ttacggaaaa gaatatgaag gcatcattcg
     3841 ttctactttt gttatcgatg aaacaggtaa gattgctcaa atttatagta atgttcgtgt
     3901 aaaagatcat gctttaaaag tgcttgaaag tctttaatgc tggtgcatat ttgttgtagt
     3961 gtagatagtc attattttat tgaagaactt agaaagactt attctgatga aaaaatcata
     4021 ggatattttt atgatccaaa tatccatcct ttaagcgaat acgaactaag atttttagat
     4081 gtaaaaagat cttgtgataa acttggcatc aagctttata aaggtgagta tgagtatgaa
     4141 aaatggctta atgctgtgcg tggttatgaa gatgagcctg aaaaaggtgc aaggtgtgaa
     4201 atttgctttg atgtaagaat gggatctagt gttaaatttg ctgctaaaat aggagaaaaa
     4261 aagcttacta ctacgctttt aaccagccct aaaaaagatt tagaacagtt aaaaaatgct
     4321 ttacaaaaag aatgtgagcc ttatggggtg gagtttttag ctcctgattt tcgtaaaaat
     4381 ggtggcactc aaaggcagtt tgctttagca aaaaaagaaa tgctctatca tcaaaactat
     4441 tgtggttgta tttatgggct taaaaaacaa aaacaagata agaatttcat tgatgaatta
     4501 atgtcttctg taaataagca aattttacct gcaagtatag aagcaagaat agctctttat
     4561 aaaaaagtag ttttatggga aaaaaagggt ataaaatttg aaattttaag agagaaattt
     4621 ttaaattatc gtcttttaag cgctttgata aaattagata aaaagcctgt taaatctcat
     4681 attttatttt attcgcattt taaaaacgct tatacaagat tttctttaaa tgaagaaagc
     4741 ttaaaacaga atttaaaaga aggtttttat agaagcacca aagatgaaat ggtttttgta
     4801 gaattttggc gttttaatac attttttaaa aataaatgga aaaattttga agatttttta
     4861 aaaagacctt tgagtgtgca agcagaaatt aaatggcgca ataaattgtt tggaacttat
     4921 aatctt
//
LOCUS       DAEBKH010000115         4860 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.115, whole genome shotgun sequence.
ACCESSION   DAEBKH010000115 DAEBKH010000000
VERSION     DAEBKH010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4860)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4860)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4860
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.115"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(117..566)
                     /locus_tag="KIL20_001393"
     CDS             complement(117..566)
                     /locus_tag="KIL20_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HBD2721410.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            complement(693..1913)
                     /locus_tag="KIL20_001394"
     CDS             complement(693..1913)
                     /locus_tag="KIL20_001394"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HBD2721411.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILNS"
     gene            complement(1907..2731)
                     /gene="galU"
                     /locus_tag="KIL20_001395"
     CDS             complement(1907..2731)
                     /gene="galU"
                     /locus_tag="KIL20_001395"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HBD2721412.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGKPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVIFGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEIQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(2813..4786)
                     /gene="acs"
                     /locus_tag="KIL20_001396"
     CDS             complement(2813..4786)
                     /gene="acs"
                     /locus_tag="KIL20_001396"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HBD2721413.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQALEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPDEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDAIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPGLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSGVVETIVKLAKAEFE"
BASE COUNT         1553 a          961 c          631 g         1715 t
ORIGIN      
        1 aacttacttc aaatttaggg tgattttcat aaaaaaaatt aagtactttc aattttatcc
       61 tttaaaaaag gatattataa cctagtttgt ataattgggg cataaagccc cttaaattac
      121 attttgcaag caccctgtaa agtagcacct atcatccaaa gacttttttc atattttgca
      181 atattttctt gcgcaaaagc agctgttgtg gtatcacttt ctttttctgc tgcttcattg
      241 agttttttaa attctgctaa aagatattca taatcttgtt tgatcagttc tatgacttca
      301 agcggagtaa agcaatcttt tgcaactttt ggactttttg cattttccat taaaactttt
      361 tggcaagtga tagctttttc gccaagttgt aaaactcttt cagcacaact atcaaaaagt
      421 tctgccattt cttcataagc tttttctgtg tactcgtgta tagaaaaaaa ttgcaaacct
      481 tttacattcc agtgataatt atgaaattta acccatagat gatgagcatc tgcttgcatt
      541 tgtaataatt gttttgtaac tgacatgatt gactcctttt tttaattttt aaaattataa
      601 cataaaattc ttaaataata attattatta attaaaaatt tttattataa ttttaactta
      661 aaattattat actctttttt aatgaatttt gattaagaat ttaatatatt ttttaagatc
      721 aactttccaa cttccacacc aggttgatca taggtgttaa tccctagcat aacaccgcaa
      781 gttgaagtaa aaagttcata ataatacatc aaatatcccg catgccaagc atcaagtttt
      841 tcaagttcta tcacatcaac actcaaattt tcagcgatta aagcgtgcat agttgcatta
      901 cattgagcgt ttaaaagttc gtgaagattg actttattac ttaaagaatc taaaaattta
      961 aaatgaatat cagggataat aggtgctttt tgagcgtctt tgatttttaa aaaagttaca
     1021 gttttatttt taggtccatc cataatgagt tgtaaaaaac tatgctgatc tcttgctcca
     1081 atgagtgcaa taggagttaa acctatacgt ttatagcctt gctttttacc taaactttca
     1141 gcaataagct ggatatacca ttcattaaag cctttaaaag catcactata tgaaaaaagt
     1201 acattgatat tggcattttt gtgtgtgcaa taatgatagg ctttttgtaa aatttcatct
     1261 tttttatgag taaaaaaatc ttcaaaacaa gctttagctc cttctaaaag agctttggca
     1321 ttatagccac aaaaacaaag cggaactata cctacggctg aaagtatgct aaaacgacct
     1381 cctacatttg cagggataaa aaagcattta atacctaaat tttcaccttc ttgatgaagt
     1441 tttgaatcct tatcggtaat aaaaacaaag tattttttta attcttgcat atcaagttta
     1501 aaatgttcaa taagaagttt aaaaagcgat acaacttcta tagtactacc tgttttgctg
     1561 atgattaaaa acaaactttc ctcaagcttg attttttcta aagtcttatt aaaagaatgt
     1621 gaacttgtgt tatcgagtat aaaaagttct ctttggttgc ttttttcatt aaaaagcata
     1681 tcacgcaagg cttttacacc acaacttgaa ccacccattc ccactaaaac gatatttttt
     1741 atgtgttctt tgtctttgat aaaagccaaa ctctcatcga ttaaattcaa acttgtatca
     1801 ataagatgat aataccctat atctccactt tttacctcat cattaatacg atttgcataa
     1861 gagcttatag tatgaatttc actttgttta aaaaaaagtg tattgtttaa catttacttt
     1921 tctcgtaaaa ataatttgta gcctctacaa agccttctac acttccacaa tcaaagcgtt
     1981 tcccttgaaa tttataagct aaaaccatac cattggttgc ttgagttaaa agcgcgtcgg
     2041 taagttgaat ttcgccattt tttcccgctt tagtattttc taaaattcca aaaatatcag
     2101 gagttaaaat atatcttcct atgatagcaa gattacttgg agcttcatca ggacttggtt
     2161 tttctatcat agaattaacc atgataagat tttcttctac aaaatttcca aaaattactc
     2221 catagtttga aacttgttct tttggtactt ccatcacagc tatgatggtg cagcgatatt
     2281 tttcataaat ttttaccatt tgagccataa catttaagcc ttcttcgttg acacacaaat
     2341 catcagccaa aattacgcca aaagcttcat caccaaccaa aggtttacct tttaaaaccg
     2401 catcacctaa tcctttcatt tgattttgtc ttgtaaaagt aaaggtgcaa cgattgatca
     2461 aagagcgaat ttcatcaagt aagtattctt tttttgtacc tgaaatttga tgctcaagtt
     2521 cataagaaat atcaaaataa tcctccaaag ctctttttcc acgccctgtg acaaagccca
     2581 tattttccat tcctgcttcc aaagcttcat caaccccata atggatcaaa ggcttagtta
     2641 agataggtaa catctcttta ggtaaagttt ttgttgcagg taaaaatctc gtcccataac
     2701 ctgccgcagg gaaaatacaa gtttgaagca taaaaatttc cttttatttt tttatcatta
     2761 tagcttattt ttatgaattt ttatgcaaca aggcaaagtt ctttttgcct tgttattcaa
     2821 actctgcctt agctaattta acaatagttt ctactactcc agaatcttcg agcgttgaaa
     2881 tatcctgttt gatttcttca cctcttgcta tagttcttaa aattcttctc attattttac
     2941 cacttctagt ttttggcaaa cctggagtat aaagaatttt ttctatttta gctataggtc
     3001 ctatttctac tcttaaaatg tcattaagtt cttttaaagt ttctatagct ccgccaagat
     3061 cacaactgga tgcaggactt aaaaccacaa aagcaaacag tgactcgccc ttaatcgcat
     3121 ccaaaatact cactacagct gattctgcta cacttggatg tttagcaata gcgctttcaa
     3181 tttcagccgt tcctatacga tgtcctgcaa cattaaccac atcatctgtt cttcctgtga
     3241 tagttatata accattttta tcataaaaag caccatcgcc actaaaatat acagcttttc
     3301 catctttttt agcttgagaa aaataacttt ctatatagcg ttcatcatta ccccaaattc
     3361 cacgaatcat cgaaggccaa ggtttggtta tacaaagcaa tccatcttca ccttcatctt
     3421 ttttattgcc ttcttcatca ataacttctg caaaaattcc tggcaaaggc aaggtagcac
     3481 aacctggttt taaaggagta gcgcctggta aaggcgtgat catatgccca cctgtttctg
     3541 tttgccacca agtatcgact ataggacttt tagttccccc tatttcatca taaaaccact
     3601 tccaagcact aggattgata ggctctccaa ccgttccaag cacttcaagc gtacttaaat
     3661 catattttct tggctcatca ggtgcatcag catgaagcat tcttatggca gttggcgaag
     3721 tgtagaattt gcttatttga tactcttcta tcattctcca ccaacgccca gaatttggat
     3781 aagtaggagt tccttcatgc attatagtcg ttgctccaca tgctaaaggc ccataaacta
     3841 cataagtatg tcctgtaatc caacccacat cagcactaca ccaataatta tcataatctt
     3901 taatatcaaa aacccattcc atagtcattt gtgcccaaag tatatatcct gcacttgcat
     3961 gcataactcc ttttggcttg cccgttgatc ctgaagtgta aagcaaaaac aacaaatcct
     4021 cgctatccat gatttcgggt tcacacttat aagactcatt tttcacaagt tcgttataaa
     4081 catagtccct tcctttaata tattctatag gctcattatt gcgtataact ataagtactt
     4141 tttctacact ttcacaccct tcacttaaag ccttatctac tgcaggtttt aacatataag
     4201 gtttgccacg acgaaaagca ccatcagccg ttactacaag tttagctcct gcatctataa
     4261 ttctatctct taaggcttca ggagaaaacc ctccaaatac cacactatga atagccccaa
     4321 tccttgcaca agctaacatt actatagctg tttctggaat cataggcata taaattacaa
     4381 ccctatcgcc tttttttact ccgaattttt taagcaaatt ggccgccttg caagtttcat
     4441 gcaataatct tctataagta taaacttcat aatcccccat ttcaccttca aaaatcaaag
     4501 cagctttatt gcgtcttgtt ttcatatgac gatcaagaca ttgataactt acatttaaag
     4561 ttccaccttc aaaccattta taaaatggag ctttatcctc atttaacact cttgaaaaag
     4621 gcgaaaacca ctcgatcttc tcaagtgctt gtcttttcca aaaaccttca aaatcttcct
     4681 tggcttcatc gcataaatca tagtattcac ataaattttt tatacgagca ttacgagaaa
     4741 attctttact tggcttaaaa agctcttgat tattttgatt aagcataaaa actcctttat
     4801 ggttattttt aaacattata taagagttta tttgtattaa atacaaattt aaaaaataat
//
LOCUS       DAEBKH010000116         4843 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.116, whole genome shotgun sequence.
ACCESSION   DAEBKH010000116 DAEBKH010000000
VERSION     DAEBKH010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4843)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4843)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4843
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.116"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..121)
                     /gene="rpmB"
                     /locus_tag="KIL20_001397"
     CDS             complement(<1..121)
                     /gene="rpmB"
                     /locus_tag="KIL20_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HBD2721414.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTL"
     gene            261..908
                     /gene="rpe"
                     /locus_tag="KIL20_001398"
     CDS             261..908
                     /gene="rpe"
                     /locus_tag="KIL20_001398"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HBD2721415.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFIDLFIPLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLVHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            905..1666
                     /locus_tag="KIL20_001399"
     CDS             905..1666
                     /locus_tag="KIL20_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HBD2721416.1"
                     /translation="MSSQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFTLKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPENITELTGITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELINFTKTARIKQK"
     regulatory      1688..1792
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1849..3141
                     /gene="thiC"
                     /locus_tag="KIL20_001400"
     CDS             1849..3141
                     /gene="thiC"
                     /locus_tag="KIL20_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HBD2721417.1"
                     /translation="MKTQMNYAKEGVFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFDIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQIGAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGVQVMIEGPGHMAINEIEVN
                     MQLEKRLCKGAPFYVLGPLVTDIGAAYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     gene            complement(3133..3651)
                     /locus_tag="KIL20_001401"
     CDS             complement(3133..3651)
                     /locus_tag="KIL20_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721418.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKSKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPKKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(3641..4168)
                     /locus_tag="KIL20_001402"
     CDS             complement(3641..4168)
                     /locus_tag="KIL20_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721419.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDDEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            complement(4165..>4843)
                     /locus_tag="KIL20_001403"
     CDS             complement(4165..>4843)
                     /locus_tag="KIL20_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HBD2721420.1"
                     /translation="LQHILFNNALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYN
                     IQKEKQPDDQILLYGFKQGHLLAIIVAKGNTILYGDFKIFEQELGLELELPSEDNQEI
                     ENNNDDTEVTLDNFNEALNNKFDLLDQENNLETLDNNDNFNLDELNQFSNDMELCRYI
                     ITSIEKFYNDDKYAGVFINGILLYSESDINISAIDFLESETFLEIKTKQINTLDLMIE
                     LMQKELK"
BASE COUNT         1626 a          627 c          866 g         1724 t
ORIGIN      
        1 ctaaagttac acgaactgtt ctgagattag gtaaaaagcg tctttttgtt ttattgttag
       61 catggctgac attattaccc accattggac ccttgcctgt gatttgacat actcttgcca
      121 ttttcttgtc cttatgaaaa tttttaaatg gagattttat caaaattaag cttaaaatat
      181 tccataattt atagtttttt taatatataa gtcgataaaa tattatttat cacatttata
      241 tatactttaa ggttttgatc atgtatgtag ctccaagttt attgtctgca aattttttga
      301 aattagaaga agaagttaaa gctattgaag ctgcaggtgc agatctttta catattgatg
      361 taatggatgg acactttgtt ccaaatttga cttttggacc ttgcgtgatc gaaaaaattt
      421 caactattag taagttgcca ttagatgtgc atttgatggt taaagatgta agtaaattta
      481 tagatctttt tatccctttg aaaccaaaat tcatttcttt tcatatggaa agcgaagttc
      541 atcctataag actttgtgaa tatataagaa gtcaaggaat ccatcctgct attgttttaa
      601 atccgcacac tcctattgat tctattaaac acatgctaga atttgtagat atggtacttt
      661 taatgagtgt taatcctgga tttggtggac aaaaattttt acctttggta catgaaaaaa
      721 tcaaagaatt gcgccaaatg attgataaaa aaaatgctaa agtttttata gaggttgatg
      781 gtggtgttaa tggtttaaat gctagcgatt tagaggaatc cggagctgat attttggtgg
      841 ctggaagtta tattttttct tctaatgatt ataaaactgc aatttcatct ttaaagcttg
      901 aattttgagt tcacagcaaa ttgatcagat tatttctata ttaaataagc aaagcaagcc
      961 ttatgattgg gtgatgcaag agtttgccaa agttgaagaa ttaaaaaatt ttgatttaga
     1021 tttggaaact tttgagcttt tgggtttggg cttaactttg aataaagata atatttttac
     1081 ccttaaaaca cgcacaacaa aaattaaaga tgaaattttt tgtatagtag atatagaaag
     1141 tactggcggc gtaagtaagg gggaaatttt agaaattgga gcagtaaaaa ttcaaaattc
     1201 taaagaaatt ggacgctttc aaagttttgt taaagtaaaa gaaattccag aaaatataac
     1261 cgaacttacg ggtattactt atgagatggt ggaaaatgct ccaagtttag caaaggtttt
     1321 aagtgatttt aggctttttt taaaagacag tatttttgta gcgcataatg tgcgttttga
     1381 ttatagtttt atttctaagg ctttaaatga gtgtggtttt ggcattttgc ttaatcgtcg
     1441 tatttgcact atagaatttg cacaatgttg tatagaaagt ccaaaatata aactagaggt
     1501 tttgaaagaa tttctgggcg tggaaaatac gcatcatagg gctttagatg atgctttggc
     1561 agctgctgaa atttttaaat attgccttgg aaaacttcct tatcatataa aaactacaga
     1621 agaacttata aattttacaa aaactgcacg cataaagcaa aaataaatat ttaaagtgta
     1681 taattaaaac ataaatgacg ggagcttgtg taacaggctg agagtaagct aaaagcttag
     1741 accgaaccgg atctggataa tgccagcgtc gggaagattt ataaatttca atactttaaa
     1801 aatttatact cacccttcat ttatccaaat tttttaaagg ataaatttat gaaaactcaa
     1861 atgaattatg ccaaagaagg tgtttttact aaagaaatgc agattgttgc acaaaaagaa
     1921 aatttaagta aagatttttt gcttgaaaat attgcttgcg gtaaaattat tatccctgca
     1981 aatattaatc ataaaagtct tgatccaaat ggtataggtt ttggactgcg tactaaggtt
     2041 aatgtaaatt taggagtttc aaatgattgc gttgattata gcgaggaaat gaaaaaagta
     2101 gagctcgctc ataaatttga catagaagcg attatggact taagcaatta tggcaaaaca
     2161 agtcgtttta gagacgagct tgttaatgtt tcaaaagcta tgataggaac agttcctgta
     2221 tatgatgcgg taggattttt agaaaaagat ttaaaacaaa ttggtgctaa agacttttta
     2281 gatgttgtat atcatcatgc taaaagtggg gttgatttta tgacaattca tgcaggtatt
     2341 aattctcgcg cagcgcatat ttttaaacaa agtaaaagac ttacaaatat agtttcaaga
     2401 ggaggctctg tgctttatgc ttggatgatg atgaaagatg ctgaaaatcc tttttttgag
     2461 tattatgatg atttgcttga catttgttta aaatacgatg taactttatc tttgggcgat
     2521 gctttgcgtc ctggctctac tcacgatgca agtgatgggg cgcaaatttc agagcttata
     2581 gaattatcgc ttcttaccca aagggcttgg gatgttgggg ttcaagtaat gatagaaggt
     2641 ccagggcata tggctattaa tgaaatagag gtaaatatgc aattagaaaa gcgtttatgc
     2701 aaaggagcgc ctttttatgt cttaggacct ttggtaacag atattggtgc agcgtatgat
     2761 catattagtg gtgctattgg aggagctgtg gctgcagcta gcggtgctga tatgctgtgt
     2821 tatgtaacac ctgctgaaca cttaagactt ccaaatttag aagatgttag agagggtata
     2881 gttgcgacta aaattgcagc tcatgcggga gatatagcta aacttccaaa agaaagagca
     2941 agagatgatg agatgagtaa ggctagacaa gagatagatt gggagaaaat gtttaaactt
     3001 gctattgatg gagaaaaggc taaaaaaatg tttaatgagc gtcgccctga tgatttaaac
     3061 tcatgttcca tgtgtggaaa aatgtgtgca atgaatacta tgaatcaaat tttaaaaggc
     3121 gaagatgtga gtttagcttg aataaacttt gagagtaaga tctatagaga taccttgctc
     3181 tcctgcttta agattaagtg gataatcaag cttgattaaa ttattatagt tttttagagc
     3241 atcaataaaa tcataaagtc ttctaggatt gttcattgtc gctttaatgg ctaagcggtt
     3301 ttttagatat ttttcttgtt ttttgggctt agtttcttga atttttacat tttgaaaata
     3361 tttttgtaaa aaaatatcaa aatttcctat attaaaattt tgctcaaatt gctctaaact
     3421 tttgttgttt tcgcttctta gagttgatat tttatcttca ctaaagtcaa attttgattt
     3481 agcggctttt aagatagcaa gttgtgagtt ttctctaaga tttgcttgtt tgtagttttt
     3541 taatgtcggt aaaagtaaaa ataagatcaa ggctgtgcaa acgcttataa aacttaacgc
     3601 gcaaatgata agctttaata aatcaatttc ttctagactt ttatctttca tctgcaactc
     3661 ctggaatttg tttactaata ctaacaaaac gataccaccc attatctaag cgataatagg
     3721 ttgtatagct ttgatcaaag atgcttttta aaggggtttc taaaagtaga gtaaacattt
     3781 ctcttgtagg agtgactccg ataagtttta aggaatattc gtcttgttca acactttcaa
     3841 gagtaatatt atcagttttt acaataatat caaatagatt tcttaagctt tctttaacaa
     3901 tttgattttg agtgttaaaa tttttcgcta tttggctttg atcaaataaa atttcataaa
     3961 gcatttcatt ttgcttagtt tgattttgaa gcactataac ttgttgtttt tcatcatcga
     4021 tagagctatt gattaatgca atttttattg tatatgtaaa atatactagc aagataaata
     4081 atatactaaa accaaaaagt cctagccaaa ttttatcaaa gagtgtgaaa ataggttttt
     4141 ttcttggctg tatgaagcta taagtcattt aagctccttt tgcatcaatt ctatcataag
     4201 atctaaggtg ttgatttgtt tcgtttttat ctctaaaaaa gtttcacttt ctaaaaaatc
     4261 aatagcactt atgttaatat ctgattcgct atataataaa ataccattga taaatacccc
     4321 agcatattta tcatcattgt aaaatttttc aatgctcgta ataatataac ggcaaagttc
     4381 catatcattg ctaaattgat ttaattcatc aagattaaaa ttatcattat tatccaaagt
     4441 ttcaagatta ttttcttgat caagtagatc aaatttatta tttaaggctt cattgaagtt
     4501 atctaaggta acttcagtat catcgttgtt gttttcaatt tcttgattat cttctgatgg
     4561 aagttcaagc tctaaaccta attcttgctc aaatatttta aaatcaccgt ataaaatagt
     4621 attgccttta gcaacaataa ttgccaaaag atgtccttgt ttaaatccat aaagtaaaat
     4681 ttgatcatca ggctgttttt ctttttgtat attgtagtaa agaagggcaa aaggggaata
     4741 taaaaaatct aaacctctat attcttcaaa aagctcgcta taatattcca catgttcggt
     4801 agccgtataa acaagggcat tattaaataa aatatgctgt aag
//
LOCUS       DAEBKH010000117         4814 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.117, whole genome shotgun sequence.
ACCESSION   DAEBKH010000117 DAEBKH010000000
VERSION     DAEBKH010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4814
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.117"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..288
                     /locus_tag="KIL20_001404"
     CDS             <1..288
                     /locus_tag="KIL20_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721421.1"
                     /translation="GEMKLTIYNKEIIFSDMKKAYKYISLDRLSPYLNNPKELNEHVA
                     REEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEIIEISSIK"
     gene            311..2923
                     /locus_tag="KIL20_001405"
     CDS             311..2923
                     /locus_tag="KIL20_001405"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HBD2721422.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREKFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYTKFVGKEVILPISKKAIKIIADEHVEKEFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFNEKGILNEHCLEFQGLERLEAREKIVAKLESLGFIEKIEEH
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSENDLEDFYPNSLLITGFDILFFWVARMMFQSTNALHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVGIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIMMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            2928..3938
                     /locus_tag="KIL20_001406"
     CDS             2928..3938
                     /locus_tag="KIL20_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HBD2721423.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRVLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGAIDELFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            3935..>4814
                     /locus_tag="KIL20_001407"
     CDS             3935..>4814
                     /locus_tag="KIL20_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD2721424.1"
                     /translation="MNEENISIISAFFSRISQFFNEFSWQDIKEVSLSSITSFSENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGISIVINI
                     NNDENFFWQVIVFILFL"
BASE COUNT         1820 a          649 c          848 g         1497 t
ORIGIN      
        1 ggggaaatga aattaactat ctataacaaa gaaattatct tttcagatat gaaaaaagct
       61 tataaatata ttagtttaga tagattaagc ccatatttaa acaatccaaa agaattaaat
      121 gaacatgtag cacgtgaaga aattttagaa agacttaaac ttcaaattaa aaaagacggc
      181 aaaggaagtg atttttctaa acatatcaaa agtttgaaaa ctggacttaa tacagcacaa
      241 tatttcttcc cgttttgtga aattatagaa attagctcta ttaaataagc taaaacaata
      301 aaggcaaata atgtatgata aaaatttaga aaaagagtat tatcaaattt gcgaagaacg
      361 cggatatttt gaaatcgatg gcaataaaac catacaagaa aaagataaaa atttctgcat
      421 tatgatgcct cctcctaatg tcactggagt tttacacata ggacatgctt taaccttcac
      481 tctacaagac attatgacgc gttataaaag aatggacggt tataaggttc tttatcaacc
      541 aggacttgat cacgcaggta ttgccactca aaatgttgta gaaaaacaac tccttgctca
      601 aggcattaaa aaagaagaac taggtagaga aaaatttata gaaaaagtat gggagtggaa
      661 agagcaaagc ggtggaaaaa ttttagacca aatgagaaca ctaggcatca ctcctgcatg
      721 gagtcgcttg cgttttacta tggatgaagg tttggttaat gccgtaaaaa aagcctttgt
      781 agaactttat gataaaagac ttattgtacg cggaaactat atgatcaatt ggtgtactca
      841 cgatggcgct ttaagtgata tagaagttga atacaaagaa aacaaaggaa aactttatca
      901 tattaaatac tttttaaaag atagcgatga atttttagta gtagccacaa cgcgtcctga
      961 aacttttttt ggcgatactg cagttatggt acatcctgat gatgaacgct atactaaatt
     1021 tgtgggtaaa gaagtgattt tgcctataag caaaaaagcc attaaaatca tagccgatga
     1081 acatgtagaa aaagaatttg gaacaggagt tgtaaaagtt actcccgctc atgacatgaa
     1141 cgattatgaa gtaggactta gacataattt agattttata agtgttttta atgaaaaagg
     1201 aattttaaac gagcattgtt tagagtttca aggtttagaa cgcttagaag caagagaaaa
     1261 aatcgtagcc aaacttgaaa gtcttggctt tatagaaaaa atagaagagc ataacaatca
     1321 aataggatat tgttatcgtt gcaacaatat agttgaacct tatatctcca agcaatggtt
     1381 tgtaaaaaaa gaaatcgccc aagaaagtat agaaaaagtt gcacttggcg aaagtaaatt
     1441 ttacccaaat cactggataa atagctttaa tgcttggatg aaagatttaa gagattggtg
     1501 tatttcaaga caactttggt gggggcatca aattcctgtg tattattgcg aatgctctca
     1561 tgaatgggca agccaacata cgcctaaaac ttgtccaaaa tgtcaaagtc aaaatttcaa
     1621 acaagatgaa gatgtacttg atacttggtt ttcttcagga ctttgggcta tgagtactct
     1681 aggctgggga aatgaaaatt ggggcaaaga taaaatttgg tctgaaaatg atttagaaga
     1741 tttttatccc aattctttac tcattacagg ttttgatatt ttatttttct gggtggctag
     1801 aatgatgttt caaagcacta atgctttaca tcaactgcct tttaaagata tttatttaca
     1861 tgctcttgtg aaagatgagc aaggtagaaa aatgagtaaa agtcttggaa atgtcatcga
     1921 tccaaatgaa agtattaaag aatatagtgc tgatatttta cgctttactt tagcacttct
     1981 tgctatacaa ggacgagata ttaaacttag caatgataaa cttttacaag ttagaaattt
     2041 tacaaataaa atttataatg ctacaaatta tctgctttta aatgaaagta aatttgaaga
     2101 tttggaaaat atcacacttc attcagaatt agcaaaatat atctatgcca aatttcaaac
     2161 ttgtgttaag gatgtaagag aaaatttaga caattatcgc tttaatgatg cagctaatac
     2221 tctatataaa ttcttttggg atgatttttg cgattggggt atagagctta gcaaagccga
     2281 aaaatcaagc gttaaagaac ttggtagtat tttcaaagaa gctttaaaac ttttaaatcc
     2341 tttcatgcct tttatcagcg agtatttata ccacaaacta agcgatacag aacttaaaac
     2401 aagcccttct attatgataa gcaaatatcc aaaatttaaa gaacaagata aaaatataga
     2461 aaaaatcttt tctttgctca tagaaagcat agttggtatc cgccgtgcta aaagtttaat
     2521 cgatcttgga aattctaaaa tagaaaaagc ttatatcaaa tttaacgata aaaaaatcaa
     2581 agatgaaatc aaagcttata tgaattttat catgatgctc gcaaagtgcg agcaaataga
     2641 atttagtgaa gaaaaattac caaaggcaat atgtgatgtt agcgagaatt tagaaatttt
     2701 tattacgctt gaaaatgttg atttaagtgg tattttaaca agacttgaaa atcaaaaaaa
     2761 taagcttgaa aaagaaagtt tcaagcttaa ctccatgctt tcaaatgaaa aattcatcgc
     2821 taacgcacct aaagaggtgg ttgagcaaaa taaagaagct ctagaaaatt taaaaattca
     2881 acttgaaaaa atatcagttg aacttcaaaa tctaagaggt taaaaatttg ataaaaataa
     2941 aaaatttaaa aaaatattat ggcaaggaac tcgtgataaa cgatgtttct ttggagatta
     3001 aaaagggtga aatttacgcc atagtaggtc atagtggagc tggaaaatcc actcttttaa
     3061 gatgtattaa tggacttgag aattatcaag aaggaagttt aaaagtcttt gatcaagaaa
     3121 ttaaagattt aagtcaaaaa aaatcaaaag agctaagagt gcttagaaaa gatataggga
     3181 tgatctttca aaattttgcc ctaatggaac gcaaaaatgt atttgaaaat gttgctatgc
     3241 ctttaagaac acactatact cagtgtaaat ttcatgccaa gctttttaat aaagaataca
     3301 tgagcgaaaa agaaattgcc caaaaagtca attccttact tgaaatcgta gggcttgatc
     3361 ataaaaataa atcctatcca agagaactga gcggggggca aaaacaacgc gttgctattg
     3421 ctagagcctt agctttaaac ccaaaaattt tacttagtga tgaagctact tcggctcttg
     3481 atccaaacac tacaaaaaat attttagagc ttatatctaa aatcaatgct gaatttggga
     3541 ttactgttgt tttagtaact cacgaaatgg atgtagtaaa agacatagct caaaaagctt
     3601 tattacttga acatggacaa atcataggaa gtggagcaat tgatgagctt tttttaaggc
     3661 ctaatgccaa aatgaaagaa tttttaggag aaagcgactt cttgcctgag cacggactta
     3721 atatcaaact ttactttcca aaagaagttg cccaaaatag tgtcatcact catatggcaa
     3781 gaactctaaa tatagacttt aacatagttt ggggtaaaat agaaaaactt aatggaaaag
     3841 ccttgggaaa tttagttata aatataaatg aaaaggataa agacaaggtt cttgattaca
     3901 tagaaaaaag tggagtatta tgggaggtgg catcatgaat gaagaaaaca tctctatcat
     3961 cagtgctttt tttagtagaa tttctcaatt ttttaatgaa ttttcttggc aggatattaa
     4021 agaagtgagt ttaagttcta ttacaagttt cagtgaaaat tatgaaaaca ttttaaaacc
     4081 tgcgcttaat gaaacaattt atatgagttt aatggctgta ctatttggat ttttattggc
     4141 tatcattcct ggaattttac ttgctatttg ggataaaaac ggaattaaag aaaataaaat
     4201 cgcttatagc attttagatt ttattacaaa tatactgcgt gcctttccat ttttaattct
     4261 tatagttgtt cttttaccac tttctaaaat catagtaggc acaagcatag gtacaaatgc
     4321 tgccatagtt cctttagcta tcggaatagc tccttatttg gcaaagatgc ttgaaagcgc
     4381 ttttaaagaa atagacaaag gaatcataga agcagcaaaa agttatggtg ctagcaatat
     4441 tcaaattatc ttcaaggtta tctttagtga ggcccttcct gctataatta gcggaattac
     4501 tctaactttg atctttacca ttggtttttc tgctcttgct ggaactgtcg gtggtggagg
     4561 tttgggagat gtcgctattc gctatggtta tgaaagattt aacaaagaag ttatgattca
     4621 aactgtagtt attttactta tattagttca gttagttcaa attctaggta atttatttta
     4681 tacttgggct aaaaatagta aaactacata tattattgcc actctattga ttttacttgg
     4741 aattagcata gttatcaata taaacaatga tgaaaatttc ttttggcaag taattgtttt
     4801 tatattattt ttgg
//
LOCUS       DAEBKH010000118         4783 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.118, whole genome shotgun sequence.
ACCESSION   DAEBKH010000118 DAEBKH010000000
VERSION     DAEBKH010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4783)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4783)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4783
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.118"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..456)
                     /locus_tag="KIL20_001408"
     CDS             complement(<1..456)
                     /locus_tag="KIL20_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HBD2721425.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVDIDAQILQKPFLPTDFLNLLNNKDTNKHT
                     SIDLPILSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDD"
     gene            complement(513..1280)
                     /gene="fliR"
                     /locus_tag="KIL20_001409"
     CDS             complement(513..1280)
                     /gene="fliR"
                     /locus_tag="KIL20_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HBD2721426.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITSQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            complement(1267..1902)
                     /locus_tag="KIL20_001410"
     CDS             complement(1267..1902)
                     /locus_tag="KIL20_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD2721427.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLALNTKDCIAIQGSSGCGKSTL
                     LHIFSSLLIPKKGEVFFKGSSLYQIDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQNLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDNKLASFCDKTYTINANGIC"
     gene            complement(1915..2988)
                     /locus_tag="KIL20_001411"
     CDS             complement(1915..2988)
                     /locus_tag="KIL20_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HBD2721428.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSIINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(2988..3779)
                     /gene="rpsB"
                     /locus_tag="KIL20_001412"
     CDS             complement(2988..3779)
                     /gene="rpsB"
                     /locus_tag="KIL20_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HBD2721429.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTMLFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAMSEEDFGEEQE"
     gene            complement(3895..>4783)
                     /locus_tag="KIL20_001413"
     CDS             complement(3895..>4783)
                     /locus_tag="KIL20_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HBD2721430.1"
                     /translation="TEDILSKIAQKQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFK
                     EPNNTLYEAQINKIEHTLKKLDLKEGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISE
                     EQCKKAKERVKELGLEDKIEIRLQNYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMK
                     VKQVLKPGGSMLLHSILAMFEGKTNAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLA
                     ESLRMHYAKTLDLWDENFNKVLDKVREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQF
                     LITKEINNNLSLTKDYIYK"
BASE COUNT         1600 a          910 c          570 g         1703 t
ORIGIN      
        1 atcatcatca aaactcaaat cttccattcc ctctgaattt atatctaaag aattttcatc
       61 aggcaaatca tctaaattta aattatctaa atccaagctt atatcagcat aaggattttc
      121 atcattactt aatattggca aatcaataga tgtatgtttg tttgtatctt tattattaag
      181 taaatttaaa aaatctgtag gtaaaaaagg tttttgtaaa atttgtgcat ctatatctac
      241 attttgattt cgcggggcta aaaaaatcaa tctatcacat ttttctttaa gaatttttaa
      301 aggtgctgga gtatcactat ctacgacaat cacatcataa ttacccaaat tttcactata
      361 agcattaagt tcttcaaaat cataagacat ttttttagca ctaaggctta caagtcttga
      421 aactacaggg ttttcattta aaagtaaaat tttcatcact ttaatccttg aaaaataatc
      481 actattttac gataatttca tttatccttt ccttaggaga aaaaaagagt ttgcatatga
      541 gtgaaaagtt ctaaaattaa atttttaaaa tattgcatca taactaataa aatagcgatc
      601 aaaactacaa agcctaaagc tatctttata ggatagccaa taactaaaag attaaattgt
      661 ggcattgttt tcatcaaaag tccaaaaata acatcagcta aaagtgaaat tccaagtata
      721 ggaaagctca tagtaaaacc tatgatgaaa atattaaaca tacccatatt tagataatgc
      781 attaaattct catgcggata aaagccacct aaactgatat aacctaaaga atgacttaaa
      841 aacaaaagca ttaaatgatg accatcaaaa gcaagaaaaa acatcaaagc aagcaaattt
      901 aaaatttgag atgtgatagg catactcgtt ccagaacttg gatctaatat acttgccata
      961 gtaaatccca tagtaaaagc aatctgctca cctgccatca taataatagc aaaaataatt
     1021 tgaagcatta atcctgctat cattccaaaa atcacttcac taataagctg taaaacaaaa
     1081 aaactatcta aatgcaaaga ttctaatcta gccaaaggat ataaatacat agtcaaaaat
     1141 aaaactatag tactttttat caccatagga atagaattat gtgaaaaaaa aggaaaaaaa
     1201 actataagac cactcattct agcaagaagc aacataaaag ttacaacatt tttatcacct
     1261 aaataattaa caaattccat tggcgtttat agtataagtt ttatcacaaa aacttgcaag
     1321 cttgttatcg tgagttacaa aaaataaagc tgcatcattt tctttaacat aggatattaa
     1381 aagctcgata acatttttag cattatcaaa atccaaattt ccagttgctt catcagcaaa
     1441 aataatcttt ggttttttac aaagcacgcg cgcgatactc acacgctgtt gttgtccgcc
     1501 gctaagcttt cctatttttt gatgtaaaag cgtatcaata cctaatcttt ttaaaatttt
     1561 ctcatctaaa ttttgacccg ataaaacact agcaagttcg atattttcta aagctgaaaa
     1621 acctttaaaa agataatgtg tctgaaaaat aataccaaaa tcataacggc gaatttttaa
     1681 tctttcgttt tcatctatct gataaagact agaaccttta aaaaaaactt cacctttttt
     1741 tggaattaat aaggaagaaa atatatgcaa aagagtagat ttgccacaac cgctactccc
     1801 ttgaatagca atgcaatctt tagtatttaa agcaagattt aaaccctcaa aaagcggata
     1861 atcaaaacta tggcttaaat tttccgctct taagagttcc atttttaacc gtttttaaag
     1921 ttgtgcagca acttcagccg caaaatcttc agttttcttt tctaaacctt cgccaacttc
     1981 aaagcaaata aattcgacaa ttttaatttt tccgccaaat tctttttctt tttcagcgat
     2041 cacttgttct acggtttttt tatcatccat tacataaaac tgacccatta aagtaagttt
     2101 gctatcaagt tgagaattat ctgctataaa gctattcatt ttacctggga taatattatc
     2161 ccaaattttt tcaggtttac cttgagcttt aagctcttct ttgatttttt cttcagcttc
     2221 ttttaaaatt gcatcgctta attgtttgcg acttgcaaat tgaggaattt tatgttcagg
     2281 tttatttgga tctttaagtc tgcgtctttc ttcattttct ttttcaagtt cagcaaccaa
     2341 agctttgtat tcattttcaa caaaagtcat atccaaatct tcataactta aataacttgg
     2401 tctcattgct gcaatatgca tacaaatttg tcttaacaaa tctcttgatt ttgaagccac
     2461 ttcagcgcta tcacaagctg cagcgatcac aacaccaaca cggccatttg tatggatata
     2521 accatttaca acaccgttag cacctgcttt taaagttgca aatcttctta caactaagtt
     2581 ttctcctata gttgcaattt gactttttaa atattcttca aattttacgc cattgattat
     2641 gcttgaatga agttcttcca cactttgtaa gctattactt tgaatatggg ctgtggtatc
     2701 ttttgttaaa gcgataaact gatcattttt tgccacaaaa tctgtttcgg aattaatctc
     2761 acttacagtt gcacttgtaa aatcatcact tacttttaca cttactaaac cttctgcagc
     2821 aagtctatct gcttttttag cagccttacc taaacctttt tctcttaaaa gttgtactgc
     2881 tttatcaaaa tctccattag tttcactcaa agcattttta caatccatca tccccgcgcc
     2941 tgtactttcg cggagttctt ttaccattgc agcagtaatt tcagccatta ttcttgctcc
     3001 tcaccgaagt cttcttcgct catcgcttca tctaaaactt cttttttctc ttcatcggtg
     3061 atttcttttt cttcatttgc taaagcttcg ccatcttgtt ctcttaaagc ttttccttca
     3121 ttaatcgctt cagccatttc ttggcagaaa agttgcactg aacggattgc atcatcattt
     3181 cctggaatag gataagttac caagtcagga tcgcagtttg tatctagtgg agctacaaca
     3241 ggaattctta atctatttgc ttcttgaaca gcaatttttt cttttactgt gtcaataaca
     3301 aaaatcatat caggttgagt tttcatataa cgaattccac ctaaataagc taataatttt
     3361 tctttttttc ttgtaagcat taaagcttct tttttagtta aaagtttaat acttccatct
     3421 tcttccattt tttcaattac ttctaatttt ctaattgatt ggcgaatggt accaaaattt
     3481 gtcatcatac cgccaagcca tctatgattt acataaggca taccgcattt ttcagcgtat
     3541 tctttaatcg ctccacctgc ttgttttttt gtcccaacaa aaagcatagt ttttccttca
     3601 gcagcagcgt cacgaacgat attataggta tatctaaaat atcttaaagt tttttgtaaa
     3661 tcaattacat aaataccttt tctctcgcca aaaatgaatt ttttcatctt tggattccag
     3721 cgtcttgttt ggtgtccaaa atgcacaccg cattctaata aatctctcat actaaccatg
     3781 agtttctcct tataaattta gctttattcc tccacatccc ttaatttaca caagctaaaa
     3841 aggattgatg tgtgtgaaat gaagctaaga ttttatcaaa tttaagttta gtttttactt
     3901 atatatgtag tccttggtaa gacttagatt attattgatt tcttttgtga ttaaaaattg
     3961 aaacaaatcc acgcttccaa cacgaaaagc agaggcacaa gaacgaaggt acaaatccca
     4021 cattcttata aattcttcat catatttttc ccttaccttg tctaatactt tgttaaaatt
     4081 ttcatcccat aaatctaaag tttttgcata gtgcattctt aaactttctg ctaaaagaag
     4141 atgaaaatcc cactcgctca tagcacttac aacctctctt aaagaaggta aatatcctcc
     4201 tggaaaaata tatttatcta tccaagcatt tgtttttcct tcaaacatgg ctaaaataga
     4261 atgtaaaagc atagaacctc caggttttaa cacttgtttt actttcatga aataaagtcc
     4321 taaattctct ttacctacat gttcaaacat acccacagaa acaactttat caaaataatt
     4381 ttcaaattct aaatcttgat aattttgaag tcttatttct attttatctt caagaccaag
     4441 ttcttttact ctttccttag cttttttaca ctgctcctct gaaatagtaa ttccaacaac
     4501 cttaactcca tacttttgag ccgccataat agaaagccaa ccccagccac aacctatatc
     4561 taaaagcttt tctccttctt ttaaatcaag ttttttaagg gtatgttcta ttttgttaat
     4621 ttgagcttca taaagagtat tattaggctc tttaaaataa gcgcaagaat agctcatagt
     4681 atcatcaagc caaagcttat aaaaatcatt acctatatca taatgacttt taatattttt
     4741 actttcctgt ttttgggcta ttttactcaa gatatcctct gta
//
LOCUS       DAEBKH010000119         4782 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.119, whole genome shotgun sequence.
ACCESSION   DAEBKH010000119 DAEBKH010000000
VERSION     DAEBKH010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4782)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4782)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4782
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.119"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..494
                     /locus_tag="KIL20_001414"
     CDS             <1..494
                     /locus_tag="KIL20_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HBD2721431.1"
                     /translation="LLLDHFKLEENEKLIIAPRHPERFKEVENLLLNKGLEFEKFSSL
                     KDENKKFAKKILLLDALGELVNFYAISDVVVLGGSFIEGIGGHNPIEVAYFDNVLISG
                     KFIHNQKALFEEVENVYFCENLKDLNDKIHYLNLKVKISKKENLDLIIQTIQKGIDAR
                     KSL"
     gene            475..1227
                     /locus_tag="KIL20_001415"
     CDS             475..1227
                     /locus_tag="KIL20_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HBD2721432.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKARFNVIKTKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKAKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFDYYFKAELDNSFAKVGFEIKNLDF"
     gene            1295..2632
                     /gene="ffh"
                     /locus_tag="KIL20_001416"
     CDS             1295..2632
                     /gene="ffh"
                     /locus_tag="KIL20_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HBD2721433.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDVKQNGIGQKQFLNAIKVNLENILSVNGKNQGFVFASKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKAVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEALDISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLGGMANAVKDIDLDNSKEIIRIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            2697..2924
                     /gene="rpsP"
                     /locus_tag="KIL20_001417"
     CDS             2697..2924
                     /gene="rpsP"
                     /locus_tag="KIL20_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HBD2721434.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            2927..3169
                     /locus_tag="KIL20_001418"
     CDS             2927..3169
                     /locus_tag="KIL20_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HBD2721435.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTVISAYKSKDASSYRVTVKALE"
     gene            3162..3701
                     /gene="rimM"
                     /locus_tag="KIL20_001419"
     CDS             3162..3701
                     /gene="rimM"
                     /locus_tag="KIL20_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HBD2721436.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNASNSTVLFENYEDIEKAKELINLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVIDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNID
                     IEKRQIFCTQDAFLILENS"
     gene            3698..4402
                     /gene="trmD"
                     /locus_tag="KIL20_001420"
     CDS             3698..4402
                     /gene="trmD"
                     /locus_tag="KIL20_001420"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HBD2721437.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLRSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEVFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLEEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            4413..4769
                     /gene="rplS"
                     /locus_tag="KIL20_001421"
     CDS             4413..4769
                     /gene="rplS"
                     /locus_tag="KIL20_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HBD2721438.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKMGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
BASE COUNT         1785 a          525 c          923 g         1549 t
ORIGIN      
        1 agcttttgct tgatcatttt aaactagaag aaaatgaaaa actcattatc gccccacgac
       61 accctgagcg ttttaaagaa gttgaaaatt tgcttttaaa caaaggtttg gaatttgaaa
      121 aatttagttc tttaaaagat gaaaataaga aatttgctaa aaaaattttg cttttagatg
      181 ctttaggaga gcttgtaaat ttttatgcaa tttctgatgt tgttgtgctt ggaggttctt
      241 tcatagaagg cataggagga cacaatccta tagaagtggc atattttgac aatgtattaa
      301 tcagtgggaa atttattcat aatcaaaagg ctttatttga agaagtagaa aatgtatatt
      361 tttgcgaaaa tttaaaagat ttaaatgata aaattcatta tttaaattta aaagttaaaa
      421 tttccaaaaa agaaaattta gatcttatta tacagaccat acaaaaggga attgatgcaa
      481 gaaaaagctt ataaactctt agctttgcaa gaaaaaattt caaatcgtga agctaaagat
      541 ttgattgata agggttgtgt tttttcgcat ggaaaaaaag ttgtggttgc tagagctttg
      601 atgagcgata aggcaagatt taatgtgata aaaaccaaaa atcctcaaat tatttttgaa
      661 gatgataaga ttattgctat taataaacct tatgcttatg tgagtgaaga cttggagaaa
      721 aaatttaatg ccaagctttt aaatcgttta gacaaagaaa caagcggtgt gattttgctt
      781 tgcaaagatg aagattttag aaagctttgt atagaagaat ttaaaaaaca tagagtttat
      841 aaaagttata ttgcggtttt agatggggtt ttggctgaag aggttgaagt gaatgagcct
      901 atttttacca taaaagcaaa aggcggggcg ttaagtaaag tttcaaaaga tggtttaagt
      961 gccttaagca tcattactcc tattatgatg cagtcaaaaa aaaccttagc aaaaatagtc
     1021 attcaaacag gtagaactca tcaaatcaga gtgcatgcta aatttataaa acatggcgtt
     1081 gtaggtgatg aaaaatatgc taaaatttca agcgatagaa tgtatttaca tagttatgaa
     1141 attaaaattt ttgattatta ttttaaggct gagctagata atagttttgc aaaagttggc
     1201 tttgagataa aaaatttaga tttttaaagc catttaagaa aaaattttgt ataatgcaag
     1261 gtttaattta aaaattttat agaaaggtga taaagtgttt gagttagtta gcgaatcttt
     1321 taaatcagcg attaataaat tacgttttgt tgatgatgaa aaagcactta agaacgcttt
     1381 agaaacctta aaaaaagctc ttttaaaagc agatgttcac cataaggtaa ctaaagagct
     1441 tttgactttg atagaagaag atgtaaagca aaacggaata ggtcaaaaac aatttttaaa
     1501 tgccattaaa gtaaatttag aaaatatttt aagtgtcaat ggcaaaaatc aaggttttgt
     1561 ttttgcttct aaacccccaa cagtagttct aatggcaggt ttacaagggg gcggtaagac
     1621 tacaagcact attaaacttg caaattattt aaaattacgc aataaaaaag ttttagttgc
     1681 agcttgtgat ttacagcgtt tagcagcagt ggagcagcta agacaacttt gtgaagctaa
     1741 tgaaattgaa cttttcttca tagaaaatga aaaagatcct attagagttg ctaaagaggc
     1801 tttaaaaaag gctgaaagtt ctatggtgga tgttttgctt gtggatactg ctggacgttt
     1861 ggctatagat gaagctttga tgaatgaatt aaaagcagtt aaggatgttt taaatcctga
     1921 tgagattttc tatgttgctg atgcaatgag tggtcaagat ggggtcaaga ctgcggctag
     1981 ttttaatgaa gctttggata tcagcggggt aattttatca aaatttgatg cagatactaa
     2041 aggtggagta gccttaggta tagcaaaaca aatcggtatt cctttaagat ttattggtgt
     2101 gggtgaaaaa gtagcagatt tagaagtttt tataccagat cgtatagtaa gtcgtattat
     2161 gggtgagggt gatttggcaa ctttagctga aaaaactgct gcgattattg atgaaaaaga
     2221 ggctaaaaaa ctcaatcaaa aaattaaaaa aggtgaattt aattttaatg attttcttaa
     2281 tcaaatggaa agtattaaaa aattaggaag catgaagtct ttaatcggca tgataccagg
     2341 acttggcgga atggcaaatg cggtaaaaga tatagatttg gataattcta aagaaatcat
     2401 acgcattaaa gcaatgattt cttcaatgac tccaaaagaa agagaaaatc ctgatttatt
     2461 aaataatgct agaaagcgtc gtatagcaga gggagcaggt ctttctcagg tagaagtcaa
     2521 tcgtttttta aaacaattta gcaatgcagc aaagcttgca aaaagatttt caggtaaaaa
     2581 aggaatggaa agtttaacac agatgatgag tcaagctaga aggcaatttt aaattttatt
     2641 tataaatact ttttatagta tctataaata aaatttttaa tttttaagga gtataaatga
     2701 cagttattag acttacaaga atgggtagaa ctaaaagacc attttatcgt attgtagtta
     2761 cagacagtag aaaacgtcgt gatggtggtt ggatagaaag tattgggtat tataatccta
     2821 tggtagaacc tgaggtaatt aaagttgatg cagagcgttt agcttattgg aaaagtgttg
     2881 gtgcaaaact tagcgataaa gttgcttcta tcactagcaa ataatcatgg tagagaattt
     2941 tcttagagaa tacgcaaaat taattgcaga ttatcctgaa cagattgata ctcaaaaaat
     3001 tgaattaagt gaaaattttt ttgagattgt tctttttgca cataaggttg atacaggtaa
     3061 gcttataggt aaaaatggaa aaatgatcaa tgctataaaa accgtaatct ctgcttataa
     3121 gagcaaggat gcaagttctt atagagtaac ggtaaaagca cttgagtgaa aaagattttg
     3181 ttcaagttgc aaaacttggt aaaactgtgg gtcttaaggg ttatgtaaaa ttgcataacc
     3241 tgagcgactt ttcttctcaa tttaaaaaag atgctacttt ttttataaaa aacaccaaag
     3301 aaatgttaaa gattaagcat tataatgcaa gcaattctac tgttttattt gaaaattatg
     3361 aagatataga aaaggccaaa gaattaatta atcttattct ttttcagagt atcgagaaaa
     3421 gcagacaaac ttgtaaatta aaaaaagatg agttttttta ttttgatatt ttagagtgtg
     3481 aagtttttga agaagataaa agattaggta aagtgattga tatcttggaa actggagctt
     3541 cttatttatt tgaaattcaa agtgatgaaa aatgggttga aaaaaaatat cctaaaatat
     3601 tttttattcc atatttagat aaatttgtta aaaatataga tatagaaaaa cgacagattt
     3661 tttgcacgca agatgctttt ttaattttag aaaattcatg aaatttagct tcgtttcttt
     3721 gttccctaat cttatggaat tttactttca agattctata cttgcaagag caaaagaaaa
     3781 aaaacttttc aaacttaatt tttataatcc aagagatttt tctaaaaatt cctatcataa
     3841 agtcgatgat tataaaatag gtggcggagc tggacttttg atgcaagctg aacctatgta
     3901 tgaggtgcta agaagtattc aagaaaaaaa agaaaatccc tattttattt ttttaaatcc
     3961 aagtggtaaa acctttaatc aaaaagacgc caaacgctta agtaaaaaag aacatatagt
     4021 ttttgtatgc gggcgctatg aaggtataga tgaaagagtg cttgaaattt ttgcgaatga
     4081 agtttttagc ataggggatt ttattttaac aggaggagaa ttacctgcgc ttgtaatgtg
     4141 tgatgcgatt ttaagaaatg ttaacggggt tttaggaaat atggaaagtt tggaagaaga
     4201 aagctttgaa aataatttac tcgaagcgcc tgctttttca aaacctttta tttttgagaa
     4261 aaaaaataaa aaattttata ctccttcaga gtttttaaag ggtaatcacg ctagaattgc
     4321 aagtttaaaa actactttgg cgtcttgcaa aacgaaattt tttcgtccag atttattttt
     4381 agagcatgaa cgcaaaaaat aagggatttt ttatgaaaaa taaatatata gaacaatttg
     4441 aagcaaaaca aattgaaggt aaaaatgttc cagattttcg tgctggtgat actttaaagc
     4501 ttgcaattcg catcaaagaa ggggataaaa caagaatcca aaattttgag ggtatttgta
     4561 ttgctagaag aggtaatggc gtaagtgaaa cttttatcgt gcgtaaaatg ggcgctaata
     4621 atgttggcgt tgagagaatt ttccctattt atagtgaaag tttagaaagt attactgttt
     4681 tgcgtcgtgg tcgtgtgcgc cgtgcaagat tattctactt aagagataga cgcggtaaag
     4741 cagcgcgtat taaagagctt aaaaaataat ttataattat tt
//
LOCUS       DAEBKH010000120         4760 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.120, whole genome shotgun sequence.
ACCESSION   DAEBKH010000120 DAEBKH010000000
VERSION     DAEBKH010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4760)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4760)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4760
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.120"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..1447
                     /locus_tag="KIL20_001422"
     CDS             <1..1447
                     /locus_tag="KIL20_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HBD2721439.1"
                     /translation="NIRYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLE
                     EQLSLLKEYKDLNFAQSLSAPDNIETLSKLTNPLAIIGAFSHIKKLKGEKEEYIFKFN
                     DFKNLVDKIREKNSELKELVGLKPSVENIEALKASDKKLEEFEQALNFASVSYSVYEK
                     KIDEELSRVSAEIKVQSLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERYYTATKII
                     NFININIIFLILLFAYIENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGGSFR
                     VGDRVKVFQNDTTYIGDIIDISFLRITLYEELTLETYNKNRRSGRIIFIPNNYVFTNL
                     LANYTHHGMKTVLDGIDISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARLQHE
                     YSIKNPKVEPRFFMFFEHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNKHKDIKIA
                     YPSQNLYLGNLNQNHFEQHHENMHFHARNKD"
     gene            1444..2694
                     /gene="mtaB"
                     /locus_tag="KIL20_001423"
     CDS             1444..2694
                     /gene="mtaB"
                     /locus_tag="KIL20_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HBD2721440.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTSLGKLLQKMGQISGIKRIRL
                     GSLEPAQIDESFLEILDETWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEEVWQEALKKFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNILKSIVEKNNYEFRKKNQVPLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIFISQYEAQEKSNFANLKG"
     gene            2698..4314
                     /locus_tag="KIL20_001424"
     CDS             2698..4314
                     /locus_tag="KIL20_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HBD2721441.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLAKVPVEVKKDNTLWVFFILLVFIIAL
                     FISLGYFARKKELAKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNVNLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNDEEKKIQAAYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLEEPNLNEQKKEMDEFLN
                     SMKDKILKLSELLLEKEKIEHDDVKNIMQV"
     gene            complement(4322..4738)
                     /locus_tag="KIL20_001425"
     CDS             complement(4322..4738)
                     /locus_tag="KIL20_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HBD2721442.1"
                     /translation="MKIKFLSIITILSLSLNADIIISADNLPSVSKEFLQHNFKAPIG
                     IVQKDKNSYEVYLSDGTELEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKNEFPNIK
                     AREIERKINHYKIKLDNDVKILIDFNGTILHKEIDD"
BASE COUNT         1759 a          518 c          858 g         1625 t
ORIGIN      
        1 gaatatacgt tatgaaaatt ttataaaata tcaagatata aatgatgaat taatcatttt
       61 aaatcttaat ttaaaaaaga cttccgatat tcaccaacaa gaagaactta aacgcaagat
      121 agcaaattta gaagagcaat tgagcttgct taaagaatat aaagatttaa attttgcaca
      181 aagtcttagt gcccctgata atatagaaac tttatctaag cttactaatc ctttggctat
      241 tataggagct ttttctcata ttaagaaatt aaaaggagaa aaggaagagt atatatttaa
      301 atttaatgat tttaaaaatt tagtagataa aatcagggaa aaaaactcag aacttaagga
      361 attagttggg cttaaaccaa gtgttgagaa tatagaagct ttaaaagctt cggataaaaa
      421 gttggaagaa tttgagcaag ctttaaattt tgctagtgtt tcttattctg tttatgagaa
      481 aaaaattgat gaagagcttt ctcgagtaag tgctgagatt aaagttcaaa gcttaagggc
      541 tgtaaatata cttgttgcta ttgttattgt tatagctata gcttttatgt tgaaatttat
      601 tgctaaaaaa tatattaaag atagtgaaag atattatact gctacgaaga ttattaattt
      661 tattaatata aatattattt ttcttatttt gctctttgct tatatagaaa atattactta
      721 tcttgtaact atacttggtt ttgcttctgc aggcttagct attgctatga aagatatgtt
      781 tatgtctatg cttggatggt gtgtgattat ttttggcgga agttttagag taggggatcg
      841 tgtaaaagtt tttcaaaatg atactaccta tataggagat attatagata tttctttttt
      901 acgcattact ctttatgaag agcttacgct tgaaacttat aataaaaatc gtcgtagtgg
      961 gcgtattata tttattccta ataactatgt ttttacaaat ttgcttgcta attatactca
     1021 tcatggtatg aaaaccgtgc ttgatggcat tgatataagt gttacttttg atagcaatct
     1081 tgataaggca caagaaattg tggaaaatat tgtgacacgt catgccaaag gttatactga
     1141 gcttgctaga aaaaatatag ctcgtttaca acatgaatat agtattaaaa atcctaaagt
     1201 ggagccaagg ttttttatgt tttttgaaca ttggggaatg cgaatttctg catggtatat
     1261 gaccaatgct tatgcggctt tagtattaag aagtacgatt agtaaagaga ttataaaaga
     1321 atttaataag cataaagata taaaaattgc ttatccatcg caaaatttat atttaggaaa
     1381 tttaaatcaa aatcattttg aacaacatca tgaaaatatg cattttcatg caaggaataa
     1441 agattgaaag aaaaagtttt ttttaaaacc tttgggtgtc gcacaaatat ttatgataca
     1501 gagcttttaa aaagttatgt aaaagattat gagattataa atgatgagaa taaagcacaa
     1561 attatcgttg taaattcttg cacggttaca aatggagctg atagcgggat aaagtcttat
     1621 gtaaatacca tgcaaaaaaa aggcattaaa gttatactta caggttgtgg tgctgtaagc
     1681 aaaggtaagg agcttttaga taaaaaacaa gtttttggag tgcttggagc gtcaaataaa
     1741 gataaaatca atgaattttt aggagcaaag acaagttttt atgaacttgg aaatttaaat
     1801 tttattgata aagatatagt ttgtgagtat gaaaatcata ccaaagcttt tgtgaaaatt
     1861 caagaaggtt gtgattttgc ttgttcttat tgtattatcc ctagcgtgcg gggtaaatca
     1921 agaagtgtag atgaaaaagc tcttttaaaa caagttgaaa ttttgggggc taatggctat
     1981 agtgaaattg ttttaacagg gactaatata ggttcatatg ggcttaaaaa tggcacaagt
     2041 ttaggcaagc ttttgcaaaa aatgggacaa atttcaggta taaaacgcat aaggttaggt
     2101 agtttagaac ccgcacaaat tgatgaaagt tttttagaaa ttttagatga gacttggctt
     2161 gaaaggcatt tgcatattgc tttgcaacat acaagtgaaa aaatgcttcg cataatgcga
     2221 agaagatcgc atacggataa tgatttaaag ctttttaata ctatagcaag caaaggatat
     2281 gctttaggga cggattttat agtagctcat ccaggcgaga gtgaagaagt gtggcaagaa
     2341 gctttgaaaa aatttaaaga atttccactc actcatattc atgcttttat ttttagtcct
     2401 agaaacaaca cgcattctgc taccatgaaa gatgtgataa atggaacttt agctaaagaa
     2461 agattaaaca ttttaaaatc catagtagaa aaaaataatt atgaatttag aaaaaaaaat
     2521 caagttccgc ttgaagtttt ggtggaaaat caaaaagatg gtttttttga ggggtatgat
     2581 cagtttttta acaagatcaa aattaaaagt gataaagata tagctaaaga atggatcttt
     2641 atatctcaat atgaagcgca agaaaagtct aactttgcaa atttaaaagg ctagataatg
     2701 aaaaataaaa agataatttt agcatctttt atggttttat gtatgctttt gggaatttta
     2761 tattttaaaa atgaacctaa atatatagat gaaaatcttt atcaaagtct gttaagtcaa
     2821 aatttaatcc aaaaagctgt gattgataaa gacgaaattt ggcttaaggc ggaaggtgaa
     2881 aattacgtaa ttataaaaga tggcatagat ataaaaacac ttttagcaaa agttcctgta
     2941 gaggttaaaa aagataacac gctttgggtg ttttttattt tacttgtttt tattatcgca
     3001 ctttttataa gtcttggcta ttttgctcgt aaaaaagagt tagctaaata tccaatatca
     3061 aataagaatc aaaatcacac tcaagctcaa aattcaaata taaatttaga aagttctcat
     3121 ataaaacctg tgatttcaaa tattactttt aatgatgtag caggtgttga tgaagttaaa
     3181 atggagctaa gcgaacttgt ggatttttta caaaatccta aaaaatataa agaatttggt
     3241 gtaaaaatgc caaaaggtgt tttaatggta ggcccacctg gtgtaggaaa aacattgata
     3301 gcaaaagcag ttgcaggaga agcaggggtg ccattttttt atcaaagcgg ttcaagtttt
     3361 gttgaaattt atgtaggtat gggtgcaaaa agagttagag agcttttttc aaaagctaaa
     3421 atgatggctc ctagtatagt ttttatcgat gaaatagatg ctgtaggtaa ggcaagagga
     3481 gaaatgtcaa atgttgaaag agatagcact ttaaatcaac ttttaactca aatggatggt
     3541 tttgaggata atagtggggt tatagttata gctgcgacaa ataaaatcga acttatggat
     3601 cctgctttat tgcgttctgg gcgttttgat aggagaattt ttttatcttt gcctgatttt
     3661 aaggatagac ttaaaatttt agaaatttat atgaaagata aaaacaataa tgtcaattta
     3721 aataaaatcg ccaaagcaag cgtaggtttt agtggagcag ggcttgaaac tttggtaaat
     3781 gaagcagcaa ttaatgcttt aagaagaaat agtgctttag tcgaggaaag tgatttttat
     3841 gctgtattaa ataaagttct tttaggcaag aaaaagattt taagttttaa tgatgaagag
     3901 aagaaaattc aagccgctta tcaggctgca aaagctttga gtgcgtatta ttttgacata
     3961 ggatttgaaa aaatcactct cattgaagat cgttttaaag aatatgagca taatataaga
     4021 tcaaaatcag agcttatcaa tcgtataaaa gtttatttgg ctggttctag agctatgaga
     4081 ttgatttata atgaaagtta tactaactcg caagatgatt ttttaaagat taaagaattg
     4141 cttgattata tgttgagttt tgatatgtta gaagagccaa atttaaatga acaaaaaaaa
     4201 gaaatggatg aatttttaaa ttctatgaag gataaaattt taaaattatc agagcttttg
     4261 cttgaaaaag aaaagataga acatgatgat gttaaaaata taatgcaggt ttgattatat
     4321 tttaatcatc aatttctttg tgcaagatag ttccattaaa atctataaga atttttacat
     4381 cgttatcaag tttaatcttg taatgattga tttttctttc gatttctcta gcttttatat
     4441 ttggaaattc gtttttaatg atattggcta aattttgagg taaaaaatct agatcaaaag
     4501 gaaaggcttt attttcaatt tccttccaag ctccatctat gtcaaattca agttctgtcc
     4561 catcgctaag atagacttca taggaatttt tgtctttttg tacgatccct atgggtgctt
     4621 tgaaattatg ttgtaaaaat tctttagaaa cacttggcaa attatcagca gaaattatta
     4681 tatcagcatt taaagataaa cttaaaatag taataatact taaaaattta attttcaata
     4741 tttttcctaa ttatttttta
//
LOCUS       DAEBKH010000121         4706 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.121, whole genome shotgun sequence.
ACCESSION   DAEBKH010000121 DAEBKH010000000
VERSION     DAEBKH010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4706)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4706)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4706
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.121"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            129..308
                     /locus_tag="KIL20_001426"
     CDS             129..308
                     /locus_tag="KIL20_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721443.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNHQMMQKNKE
                     REERFKKYKKGEQNE"
     gene            301..870
                     /locus_tag="KIL20_001427"
     CDS             301..870
                     /locus_tag="KIL20_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HBD2721444.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRAKELNPDLEVVIASLNS
                     ELLVKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLIK"
     gene            complement(900..1265)
                     /locus_tag="KIL20_001428"
     CDS             complement(900..1265)
                     /locus_tag="KIL20_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HBD2721445.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKHFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            1388..2380
                     /gene="pheS"
                     /locus_tag="KIL20_001429"
     CDS             1388..2380
                     /gene="pheS"
                     /locus_tag="KIL20_001429"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HBD2721446.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDG
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            2377..4698
                     /locus_tag="KIL20_001430"
     CDS             2377..4698
                     /locus_tag="KIL20_001430"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HBD2721447.1"
                     /translation="MIITRSWLNDWLELEEISSDKIAKTLNSIGIEVDRVSALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMPNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKTNEGIMLLDESIGKLELGRALNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLATALNLNLKEPKPFKEGENVLGIGRILRLAAEKELNG
                     LYNYRAIELKGQFQINLLLSLRLAQIESLGKNSIENLLSYATHSTGVLFNAYDLNSLS
                     GEDEEFTINLTKQAHGETKVSCKDKFLSFSGIFQNDESKCKNDSKIVIIEANYTDPLV
                     IANAKMYHKDQDEKTLYRSFRGSEPKLNLGMDFLLSIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIESIGDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNEEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     AVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYSITISF
                     SFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
BASE COUNT         1692 a          534 c          851 g         1629 t
ORIGIN      
        1 taataataac aaaaaaaaca aaaattctta tatttttctg attcaatttg taaacctttt
       61 cagagaaatt atttaaaaaa agattttata gaaatatctt tgaattttct ctaaagattt
      121 aaaaaaatgt gttagaattt cccaaaaata aggttgtatt tatggaaatt ttagatttca
      181 ttctaatagt tatttttgtg tttttaatga ttgttttggt cataggtttc aatcatcaaa
      241 tgatgcaaaa aaacaaagaa agagaagaaa gatttaaaaa atataaaaaa ggagaacaaa
      301 atgagtaaaa aagtattaat tccattggct caaggttttg aagaagctga atttatagga
      361 attgcggatg ttttaaaacg agcaaaagaa ttaaatccag atttggaagt tgttatagct
      421 tcgttaaaca gtgagttatt ggtaaaaggt gctaatagca ttagtataaa agcagattgt
      481 tctatagagg atgttgatat agaaaattta gatgctattg ctttggcggg tggctttgaa
      541 ggtatgatga atcttaagaa ttcaaatgtt attttaaata tcattaaaca acttcacagc
      601 aaaaataaaa ttgttgccgc aatctgtgct tctcctatag tcttaaatga agcaggtgtt
      661 ttagagggcg agtttgcttg ctatcctagt tgtgaagttg gacttaatgg aaatcgtgtt
      721 aacaaggctg tagttgtaaa taaaaatgtt ataacttcag caggtccagc tacggcaatt
      781 ctttttggtt tagaactagc taaaaagtta tgcggtgatg aaatttatca aaaattatac
      841 gagggaatgt tgctacctct gataaaataa tttaaatggt agtttttcta ccatttaaat
      901 taaaataaag cttgaggatt ttcttttttt gttttttcct taggcagttc aaaacctcca
      961 agcatatgaa aatgcaaatg aaaaacttct tgtccgctat tttttccaca gtttgttact
     1021 aagcgatatc cacttttatc tacgcctaaa agaacagcta attcttgtat aaaacttgtc
     1081 attttggcca taagttcagg atcaaattct tgaaagtctt taaaatgttt tttagggatt
     1141 ataagtatat gtataggtgc tttgggtgca atatcatgaa atgctagaaa atcgtcactt
     1201 tcaagcactt tattgcatgg aagtttacct tcaactatga gttcaaaaat tgttttttct
     1261 tgcattattt atcctttttt attgttggtt tgatacaatt atatctttaa agtttggttt
     1321 ttatgctgaa tttaaaatag tttttaatag aattagaact tgaaatattt tatttaaggt
     1381 aagaaaattg caaaatttta tagaacagat tcaaaaatgt gagaatttaa atgatttgga
     1441 agccattagg atttccgttc tcggaaaaaa aggtatttta acagaaggct ttacaaagct
     1501 taaagagtta gaagatggtg caaaaaaaga atttgctgct aaactaaatg cacaaaaaga
     1561 aatatttaat gaggcttatt tagccaaatt taaagatttg gaaaatcttg ctttagaaga
     1621 aagaatgaaa caagatgctt taaattttaa ctattttgat gaaagtatta caacaggtgc
     1681 cttgcatcct gttatgagta ccatggataa aatcatagag tattttatag ctttgaattt
     1741 tagcatagaa aaagggcctt taatagaaga tgacttccat aattttgaag cgttaaattt
     1801 acctaaatct caccctgcaa gagatatgca agataccttt tattttgatg ataaaaggct
     1861 tttaagaaca caaacttcac cagtgcaaat acggacaatg cttgcacaaa aacctcctat
     1921 taggatgata gcccctggtg ctgtatttag aagggatttt gatattacgc atactcctat
     1981 gtttcatcaa gttgaaggcc ttgttgtgga agaggggcaa aaggttagct ttgcaaattt
     2041 aaaaagtgta ttggaagatt ttttgcgcta tatgtttgga gatgtgaaag ttcgttttcg
     2101 tccaagtttt ttcccattta cagaaccttc tgctgaagtt gatatttctt gtgtattttg
     2161 caaaggaaag ggttgtaggg tttgtaaaca tacaggttgg cttgaagttt taggatgtgg
     2221 aatagttgat cctaatgttt ataattttgt tggctatgaa aatgtaagtg gttatgcttt
     2281 tggattggga gtagagcgtt ttgcaatgct tttacatcaa attccagatt taagatcttt
     2341 atttgaaggt gatttgagat tattggagca gtttagatga taattactag aagttggttg
     2401 aatgattggt tggaactcga agaaataagt tcagataaaa tagctaaaac tttaaactcc
     2461 ataggcatag aagttgatag ggttagtgct ttaaaggctc cagataaagt tgttgtaggc
     2521 tatgttaagg aaaaaattaa acatgaaaat tcagataaat taagcatttg tcaagttgat
     2581 atcggaagtg aaaccttgca aattgtctgc ggtgctgcga atgttgatgc aggacaattt
     2641 gtagctgttg caactaaagg cgctatcatg ccaaatggta tggaaataaa agaagcaaaa
     2701 ttacgaggag tggattcttg tggtatgctt tgttctagtt tagaacttgg ttttgaaaaa
     2761 accaatgaag ggattatgct tttagatgag agtataggga aattagaact tgggagagct
     2821 ttaaatactt atgaaatttt taacgatgag ctaatagaag tagaacttac tcctaatagg
     2881 ggtgattgtt taagtattta tggtattgct cgtgatttag ctacagcttt aaatttaaat
     2941 ttaaaagaac caaaaccatt taaagaaggt gaaaatgttt taggtattgg tagaatcttg
     3001 cgtttagcgg ctgagaagga gcttaatggg ctttataatt atcgcgccat agaactaaaa
     3061 ggtcaatttc aaataaattt attgcttagt ttaagacttg cgcaaattga gagtttggga
     3121 aaaaattcta tagaaaattt attaagttat gcaacacatt caactggtgt tctttttaat
     3181 gcttatgatt taaatagtct ttctggggaa gatgaagaat ttaccattaa tttaactaag
     3241 caagcacatg gagaaacaaa agtatcttgt aaagataagt ttttgagttt tagtggaatt
     3301 tttcaaaatg atgaaagcaa atgtaaaaat gattctaaaa tagttattat tgaggctaat
     3361 tatactgatc cattagtaat tgcaaatgct aaaatgtatc ataaagatca ggatgaaaaa
     3421 acactttata gaagctttag gggaagtgaa cctaaattaa atttaggaat ggattttttg
     3481 cttagtattt ttgagcagat tccaaatctt gttatttata gttcttctca acaaatttta
     3541 accgacaaag aattaccaat cataccaata agcattgaaa gtattggcga tataataggg
     3601 caaaatgttg ataaagatga agtattaaaa atattgaaaa aattaggttt tgaactcata
     3661 ctttcaggtg aagggcttat aaatgttaaa gcacctttac atcgtcctga tattaaaaat
     3721 ttatcagata tttgcgagga agttgtaaga attataggta ttgataatat tgcttctaag
     3781 ggtttagaat ttatagaaaa aaatcgttta aattctgcat ataaaaatta tattgagttt
     3841 ttgaatttaa ggaaaagagc agtagctagt ggttattttg aaagcttaca ttatgttttg
     3901 gataatgaag aagaacttaa aagattgggt tttgactctg ttaaattaaa actaattaat
     3961 ccaattacag cagaacttaa tactttaaga acaacccttt taaatcattt gttaaatgca
     4021 gcaagtttaa atgcaaaaaa ttctaaaaaa attattaaac tttttgaact aggggctgtt
     4081 ttcaatgtta ataatcaaga attaaatcgt atcgcattta tccattctgg cttaaaagaa
     4141 gaagctaaaa tttccaacaa ggccaaacct gaatcggtgc aattttatga ttttctttta
     4201 gacattaaaa atattatagg tgattttaaa ctaaaatcat caaaatataa tattttaagc
     4261 ccttatgaac aagcagatat ttacctatcg gatattaaag taggttttat aggccgtttg
     4321 catttaaaaa tagaaaatga gagagattta ccaaaaacat atatttgcga acttgattta
     4381 gatttaatca ggcaagattt taaaatagct aagccttact ccaaattccc agctatcact
     4441 agagatctta gcgtgttaat acctaaaggt tttgaataca atcagattaa aaattgtatc
     4501 gaagaattga atttagaaat acttgaaaat tttcgtttag ttgatattta tagtgatgaa
     4561 aaccttaaag aattttatag cattactata agtttttctt ttagggatat aaataaaact
     4621 ctagaggata atcaagtcaa tgaatgtatg gataaaattt taaatactct taaaaatttg
     4681 ggtcttgatt taagatgaaa atttac
//
LOCUS       DAEBKH010000122         4616 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.122, whole genome shotgun sequence.
ACCESSION   DAEBKH010000122 DAEBKH010000000
VERSION     DAEBKH010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4616)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4616)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4616
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.122"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..365
                     /locus_tag="KIL20_001431"
     CDS             <1..365
                     /locus_tag="KIL20_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF814 domain-containing protein"
                     /protein_id="HBD2721448.1"
                     /translation="NSKKNQDYKQEDLVANFYYNEFKICVGKNEKGNEFLLKNAKKDD
                     LWLHVRDIPSAHTLIVSNKQKISLDVIEFAARLCVSFSKLKKGSYWVDYTLKNFVKVQ
                     QKAFVNYTNFKSINITKD"
     gene            367..705
                     /locus_tag="KIL20_001432"
     CDS             367..705
                     /locus_tag="KIL20_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721449.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDNEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            714..1439
                     /locus_tag="KIL20_001433"
     CDS             714..1439
                     /locus_tag="KIL20_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HBD2721450.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLICASIIGAILGVFVYNFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVALL"
     gene            1436..2506
                     /locus_tag="KIL20_001434"
     CDS             1436..2506
                     /locus_tag="KIL20_001434"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HBD2721451.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIPISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGGFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     RYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAVDFSKMPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKAIDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            2508..3902
                     /locus_tag="KIL20_001435"
     CDS             2508..3902
                     /locus_tag="KIL20_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HBD2721452.1"
                     /translation="MKFFLTILFFITSIFALELDFSIGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINRELEVKLFNDR
                     ILLSLKNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHGKDESGILV
                     HKKNMQTQYSLDMAGKIYRAEFYELRGANLQQLLEANINSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            3899..>4616
                     /gene="tsaD"
                     /locus_tag="KIL20_001436"
     CDS             3899..>4616
                     /gene="tsaD"
                     /locus_tag="KIL20_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HBD2721453.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKMLKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDASLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNIPLKHSKELTYSFSGLKNAVRL
                     EILKHENLSDDIKAEIAYAFE"
BASE COUNT         1611 a          621 c          858 g         1526 t
ORIGIN      
        1 aaaatagcaa aaaaaatcaa gattataaac aagaagatct tgtggcaaat ttttattaca
       61 atgagtttaa aatttgtgtg ggtaaaaatg aaaaaggcaa tgaattttta cttaaaaatg
      121 ctaaaaaaga tgatttgtgg cttcatgtaa gggatattcc tagcgcacat actttgattg
      181 tatcaaacaa gcaaaaaatc agcctcgatg tgatagaatt tgctgcaagg ctttgtgtaa
      241 gcttttctaa gttaaagaaa ggttcgtatt gggtcgatta taccttaaaa aattttgtta
      301 aggttcagca aaaggcgttt gtaaattata caaattttaa aagtattaat atcacaaagg
      361 attaaaatgc cagttagccc tttaggaaat atcaattata taaatcagaa tatggcttat
      421 ccagctacac aagcaagcaa tgagcttgca aaagaaggtt ttgcagctac gctaaatatg
      481 gctgaattta atgaaaaaga aaaaacttta aacaagcttg aaaaagtcaa tgagactcat
      541 gaaatcaaag aagagatcaa agaaaaagcc gaacaagaag aaaaaaagaa aaaacacaat
      601 caagaagcta aaaccagcga taatgagaaa aatgaagaag atgagtctaa agatccaaat
      661 tttaaagacg cacaaagcat tcatcgccta gatattagta tataaggaaa aatatgttta
      721 atacaactag aattatttca gctcttgtga tgataggggc tattattatt atcgcgttga
      781 ttgatcaatt ttttatcaat tttatcgttt ttgcggtttt attgtattta tcttttagtg
      841 aagcaaaaaa actttttgct ttagaaaata tttctattat ccctttggct atagctttta
      901 ttttgggaag tttatcgcat aaagctttgc tttttgggat tttagctttg ttattagtcg
      961 ttggatattt ggtttataaa aaggcttcct taaaaccagc tcttatttat atttatccta
     1021 gtttgcctat tttagcactt tggcaagtgt atttagatca gggtatgttt gcactttttt
     1081 ggcttatcat tatcgttgca gcttgtgata gtggggcgta ttttatcgga aaacttatgg
     1141 gtaaaactcc tttttctcca acaagtccaa acaaaacctt agaaggtgtt ataggtggct
     1201 tgatttgtgc gagtattatt ggagctattt tgggagtttt tgtttataat ttttggcttt
     1261 ctttgctttg ttcgtttttt gtagcgattt ttgcagtgat tggagatttg cttgagagtt
     1321 attttaaaag agaagcaggt gtaaaagata gtggagatct tatccctggt catgggggcg
     1381 tgctcgatag aatcgatgca gtaatcattg ctgcttttgt gatggttgct cttttatgat
     1441 actttttgga agtacgggca gtataggagt aaatgctctt aaacttgctg ctttaaaaaa
     1501 cattcccatt tctgctttag cttgtgggga taacatcgct cttttaaatg aacaaatcgc
     1561 aaggtttaag cccaaatttg ttgccataaa agattcaaaa aataagcatt tagttaaaca
     1621 cgatagagtt tttataggac aagaaggttt agagcaaatt ttaacagagt gtcaagacaa
     1681 acttttgctc aatgccattg taggttttgc aggacttaaa agcactttaa aggctaaaga
     1741 acttggcaaa aacatagcct tagctaacaa agaaagtctt gttgtggctg ggggtttttt
     1801 aaaaggggct aaatttttac ctgttgatag tgagcatgcg gctttaaaat ttttactcga
     1861 aggtaaaaaa aatatagcaa aactttatat cacagcaagt ggtggagctt tttataggta
     1921 taaaatcaaa gatttaaatc aagttagtgt caaagatgct ttaaaacatc ctaattggaa
     1981 tatgggagca aagatcacta tagatagtgc gactatggca aataagcttt ttgagattat
     2041 agaggcttat catttatatg attttaaaga aattgatgct ttaatagaac caagatcttt
     2101 agtgcatgca atgtgtgaat ttaaaaatgg agctagtacg gcgtattttt caaaagcaga
     2161 tatgaaacta gctatttcag atgctatatt tgaaaaacaa gatacaccta ttttagaggc
     2221 tgttgatttt agcaaaatgc ctgctttaaa atttcatcca atcagcacaa aaaaatatcc
     2281 tatttttaag cttaaaaata catttttaaa agagccaaat ttaggtgtta tcatcaatgc
     2341 tgctaatgaa gttggtgttt ataatttttt agaaaataaa agtggatttt tagacattgc
     2401 taaatgcatt tttaaagcca ttgatcattt tggagtacct aaaatttcaa gcatagaaga
     2461 agtttttgag tatgatttta aaacaagaga gtatttaagg agttaaaatg aaattttttt
     2521 taacaatttt attttttata acaagcattt ttgctttaga gctagacttt agtataggag
     2581 aaaatggaaa aagtctagat gataataata cagttttaat ttttggtgga attcaaggcg
     2641 atgagcctgg tggatttcat gcggcaagtt tgcttttgag tgattataat atcactaagg
     2701 gtaagattat agtggctcca aatttagctt ttgatagcat tatcaagcgt tctcgtggga
     2761 ataatgggga tttaaaccgt aaatttgcaa gcattagccc aaaagatcct gattataaaa
     2821 ccgttcaacg cattaaagag cttattttac ttcctgaagt tagtatggtg atcaatcttc
     2881 acgatggttg gggtttttat aaacccactt atatcgatgc gatgcaaaat cctaagcgtt
     2941 ggggaaattc aagcgtgatt gatacaagcg aaatcaatgc aagtaaatac cctgatcttg
     3001 aaaatatcgc cactcaaacc gtaaatagtg tcaattcttc acttgctgat ccaaagcatg
     3061 cttatcatct taaaaacacc aaaactcaag agcttggcga tacggaaatg cttaaagctt
     3121 taacttattt tgtgatttca aatcacaaag ctgcttttgc aaatgaagcg agtaaaaatc
     3181 tgcctgtaaa tttaagagct tattatcatc ttttggcgat tgaaaattat ctaaaaaccg
     3241 caggaattga atttagtaga gattttgaac tcactccaca aggggttgat aaagccataa
     3301 accgagagct tgaagtgaag ctttttaatg atagaatttt actttcttta aaaaatccaa
     3361 gaaaggttat caactatgtg ccttttccgg taaataaaga gttaaattat aacacaagca
     3421 atgaacttac ggctgttatc gcagaaggaa attcttttta tatccaatat ggcaatcgtt
     3481 ttcaaacaag attatatcct gagtatttag aatttagcga tgcttttaat gaagtaactt
     3541 ttcaagttga tggcaatgaa accaccgttc cttttggaac caaggtaaaa gtaaaagaga
     3601 attttcttat tccaaagata gctaatgtgc gcgtaaatat cataggcttt gatcatggaa
     3661 aagatgaaag tggtatttta gttcataaaa aaaatatgca aacacaatac tctttagaca
     3721 tggcaggtaa aatttataga gcggaatttt atgagttaag aggtgcaaat ttgcaacaac
     3781 ttttagaggc aaatatcaat agcaagttga tcaaaaacgc taaaaatttg gatttaaata
     3841 ctcttaaaat ggcaagatca aaagataaat tcttaggttc tattttagtg gaatttgaat
     3901 gaaaaatctt atcctagcta tagaaagttc ttgtgatgat agttctatag ctatcattga
     3961 taaaaacacc ttagaatgta aatttcataa aaaaatttcc caagaattag atcatagtat
     4021 ctatggggga gtggtacctg aacttgctgc aagacttcat agcgaggctt taccaaagat
     4081 gcttaagcaa tgcaaagagc attttaaaaa tctttgtgcc atagctgtga caaatgaacc
     4141 tggacttagt gtttctttgc tcagtggaat ttctatggca aaaaccttag caagtgcgct
     4201 aaatttaccc ttaatcccta taaatcatct taaaggtcat atttatagtc tttttttgga
     4261 agaaaaaatt tctttagata tgggaatttt gcttgttagt ggtgggcata ccatggtgct
     4321 ttatcttaaa gatgatgcaa gcttagagct tttagcaagt acaaatgatg atagctttgg
     4381 agaaagtttt gataaagtgg ctaaaatgat gaatttaggt tatcctggtg gggtcatcat
     4441 agaaaattta gcaaaaaacg ccaaacttaa aaatatctct tttaatatac ctttaaagca
     4501 ttctaaagaa ctcacttata gtttttcagg gcttaaaaat gcagtgcgtt tggaaatttt
     4561 aaagcatgaa aatttaagcg atgatataaa agcagaaata gcttatgcct ttgaaa
//
LOCUS       DAEBKH010000123         4337 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.123, whole genome shotgun sequence.
ACCESSION   DAEBKH010000123 DAEBKH010000000
VERSION     DAEBKH010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4337
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.123"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..383
                     /locus_tag="KIL20_001437"
     CDS             <1..383
                     /locus_tag="KIL20_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013463606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HBD2721454.1"
                     /translation="KSTLSQENLLNFQNNYGKAKTRIQNQLSYKLGQALIINSKSVLG
                     YLSLPFIILSIVISHKQEQKAYKFKIKKNPNLALPSLETYPDYNEALKEKECFTYKLG
                     EAFIKASKNWYGGGVYQIYTQRCA"
     gene            521..1618
                     /gene="prfB"
                     /locus_tag="KIL20_001438"
     CDS             521..1618
                     /gene="prfB"
                     /locus_tag="KIL20_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HBD2721455.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPDLDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANAGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            complement(1700..2092)
                     /locus_tag="KIL20_001439"
     CDS             complement(1700..2092)
                     /locus_tag="KIL20_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721456.1"
                     /translation="MKKILTSALALGAMTLIVGCGDGDLVELKNNGNDQAMFDLGNQE
                     IMKKYPNYKLYDYTSVRAISDIKDPEGKIKEMKRDLEIDKTPYSNYVFLLNPNDKKDY
                     KVVSVYCDKDFKKRIYCSVNDAFRFYAR"
     gene            complement(2214..3332)
                     /gene="truD"
                     /locus_tag="KIL20_001440"
     CDS             complement(2214..3332)
                     /gene="truD"
                     /locus_tag="KIL20_001440"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HBD2721457.1"
                     /translation="MNLAEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILEIFTHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQG
                     FANYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARAISAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDKEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(3301..4122)
                     /locus_tag="KIL20_001441"
     CDS             complement(3301..4122)
                     /locus_tag="KIL20_001441"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HBD2721458.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLRPNHVFIKPKLRASFFYEVAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIKTIAKKHGVKLNIFGKAVKGKYEFSGREHHF"
BASE COUNT         1562 a          734 c          588 g         1453 t
ORIGIN      
        1 ataaatctac cttatcacaa gaaaatctgt taaatttcca aaataactac ggaaaagcta
       61 aaacaagaat tcaaaaccaa ctttcttata aactaggaca agctttgatt ataaattcta
      121 aaagtgtatt aggctactta tctttacctt ttataatatt aagcattgtt atttcacata
      181 aacaagaaca aaaggcttat aaatttaaaa taaagaaaaa tccaaatttg gctttaccat
      241 ctttagaaac ttatcctgat tataatgaag ctttaaaaga aaaagaatgt tttacttata
      301 aattaggaga agcttttatt aaggctagta agaattggta tggggggggg gtatatcaaa
      361 tttatactca aagatgcgcc taggttgaag agagaaatta agaagaggta aaataagcaa
      421 atttctttaa acattcgcaa aatataagaa attgtgcaat agatttttta atgtaaaatt
      481 tgctaaaata atatcttaaa aatgaagaaa gaaaattttt atggataact acgaatttag
      541 cgaactttta aaaactttaa aaaacaaagt cggcaacata gcctccatca tcaagcctga
      601 aaatatccaa acaaggctta aagaaatcga agagcttgaa aattctcctt ctttttggag
      661 tgatgttaaa caagcaggaa tcataggtaa agaaaaaact aaaatcacca atctacttaa
      721 aaactatgaa aatgctttta atgctctaaa tgacgcaagc gaacttttcg atctggccaa
      781 tagcgaaaac gatacagaaa cgcttgaagc tttatttaat gacgcaccaa aacttgaaga
      841 tactatcaca agtcttgaaa tttccatgct tttaagcggg gaaaatgatg gtaaaaatgc
      901 cattgtttcc attcacccag gtgcaggtgg aacagaaagt aatgactggg caagcatact
      961 ttatagaatg tatttaagat tttgtgaaag agaaggtttt aaagtcgaaa ctctagactt
     1021 tcaagaaggc gaagaagcag gacttaaaga tgtgagcttt ttagttaaag gagaaaatgc
     1081 ttatggttat ttaaaagctg aaaatggtat ccatcgtttg gtaagaactt ctccttttga
     1141 tagtgcagga cgccgtcata caagcttttc aagtgttatg gtaagccctg accttgatga
     1201 tgatatagaa attgaaatcg aagaaaaaga cataagaata gattattaca gagcaagcgg
     1261 tgcaggcgga caacatgtta ataaaacaga atcagctgtg agaatcacac attttccaac
     1321 cggcatagtc gtacaatgcc aaaatgacag aagtcagcac aaaaacaaag ccaccgcttt
     1381 taaaatgcta aaatctcgcc tttatgaact tgaactcatg aaacaacaag atagtgctaa
     1441 tgccggagaa aaaagcgaga taggctgggg gcatcaaatc cgctcttatg tacttttccc
     1501 ttatcagcaa gtcaaagaca atcgcagtgg agaagctttt tctcaagtgg ataatatcct
     1561 tgatggagat atcaaaaaaa tgatagaagg cgttttaatt gccttaaaag cggagtaaca
     1621 ggcttaaaaa taagtaattt ctgcaaaatg tcggtataaa aagaattaga aagatagcgg
     1681 gactttcccg cttgttttat tatcttgcat aaaacctaaa agcatcattc acagaacaat
     1741 aaattctttt cttaaagtct ttatcgcaat aaacactcac aactttatag tcttttttat
     1801 cgtttggatt taataagaaa acatagtttg agtatggagt tttatctatt tctaaatcac
     1861 gcttcatttc tttgatttta ccttctggat ctttaatatc actaattgct ctgactgaag
     1921 tataatcata aagcttataa tttggatatt ttttcataat ctcttgatta cctaaatcaa
     1981 acatagcttg atcgttgcca ttgttcttta actcgactaa atcgccatcg ccacaaccca
     2041 caatcaaagt catagctcct aaagccaaag cacttgttaa aatctttttc attatttttg
     2101 ctcctagttt taaaattaaa ttaatataac tatacctaaa tttaaaattt aaatatcatt
     2161 tttgcaataa attctaaagt aaaaatcacg taaaaattta actcataatt atttcattca
     2221 aacaaatttt tatgcaaaat ttcttctaaa accacagtag cataagagcc tttttgcaag
     2281 aaaaactcta tacaaaaatg ggctttttct ttatcataac gccattttaa ctcttctaaa
     2341 tatccccaca taaagcgtct tgaaccttgc attttagcct taaactccaa agtatcttta
     2401 aaaatttcat tttctaaatt taaggccaaa ccttctcctg tttcataagc cttagcaccg
     2461 attaaaagcc ccatagcgct tatagctctt gccttaaaac gcccaagctc agcacttaaa
     2521 tcctcacata aaaaacactt tccaaaagga taatgcccta aaacctcacc ttttaaaagc
     2581 ttaaaaaatt gttcttgttt tttaagttcc ttagcttctt ctttggagat tttataaatt
     2641 tggatcaatt ctttttcgct aaaatcattt gcaaaatgtg ataactccac tcttttactc
     2701 aaatagcgat taaaaagctc actttgaaaa gctgaaatta aaaactcttt catttttaca
     2761 tttttcatct ttttaccacg caaaatttca agcccttctt tataattatc cccaaatttt
     2821 ccaaaacgct gataaccaaa ataattcgcg aaaccttgtt tatccaaatt tatcaaagct
     2881 tgttctagtt ttaaagcatc gcttggtaaa acttttttta agcgtatgaa aaaagaattt
     2941 ccttttaaat ggcctattct tagcttgttc tcatgggtaa aaatttctaa aattttaagt
     3001 ttaggatgag aaaaatttga taaaaaactc tcaaattttt taggcataga aaggtattga
     3061 aaggttgatc cttgcttgtc tttaagccct gcataaccaa aatctcttat tttaacccca
     3121 cttgcttcac ttaaaatttt taaagcttca tttgtggtta aatctttttt attgatatgc
     3181 aaaataagat gctcaccctt accactaaat tcatacaaag gcctttcacg cactacaaaa
     3241 tcatcgctat ttttactaaa atacgcatta ataggactgt gttttaaact atacaaaggc
     3301 ttaaaaatgg tgttctcttc cgctaaattc atattttcct ttcactgctt ttccaaagat
     3361 atttaatttc acgccgtgtt ttttggctat tgtttttata ttttgacgct ctttttcatc
     3421 aaaagcaaac aaaatttcat attcttctcc gctataaagc gtataatcat caagtttttt
     3481 aaaccaagaa ataccgcatt tatttaaggc taaaagtctt gataaatcct tgcttaaacc
     3541 atctgaaata tccatagcac aagaaattaa aggtgcgact tcataaaaaa aactagctct
     3601 taattttggc tttataaata catggtttgg tcttaaagtg cccccatttt gtaaaatttc
     3661 aagccctttt aaacttcgtc ctaattttcc cgtataagca agtaaatgcc ccttttttaa
     3721 accttttcta aaaacagctt tatcattaat ctttgaaatg atagtaagac taatgtctat
     3781 tttatcattg cttatagtat caccgcctat gatttttata ttaaatttcc tagctgtttt
     3841 taaaaaacct ttttgcaagg ctttgatctc attttcgctt aaattttttg gtaaagcaag
     3901 tcctaaaagt gcgtattttg gtacagcatt cattgaaata gcatctgaga tattaacaag
     3961 catggctttt gtagcaattt gctctaagct aaaccactct cttttaaaat gcacattttc
     4021 aaaaaacaaa tccttactaa aacaccaatc atcaataata gctccatcat cgccattttt
     4081 ttcatttaaa aaagctttga taataaaatc ttctttgttc ataatgcgtg attttataaa
     4141 atttcctttt aaattctagt gaattttaga aaaattttat ataatataaa aatatttaag
     4201 gaaaaaccat gaaaaaatta gaattaagaa tttttagatt tgataaaacc aaagattatg
     4261 aggcttatta taaaccttat atttatgata attatgaaaa ttttgcaagt ttttatgatc
     4321 tgcttttgca agttcaa
//
LOCUS       DAEBKH010000124         4298 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.124, whole genome shotgun sequence.
ACCESSION   DAEBKH010000124 DAEBKH010000000
VERSION     DAEBKH010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4298
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.124"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            96..380
                     /gene="gatC"
                     /locus_tag="KIL20_001442"
     CDS             96..380
                     /gene="gatC"
                     /locus_tag="KIL20_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HBD2721459.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIVQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            448..1011
                     /locus_tag="KIL20_001443"
     CDS             448..1011
                     /locus_tag="KIL20_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HBD2721460.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSTFYKIENQSLAGFAGFLAILIIFWIVCLLAGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHASEKLQDIVSDLNNTQKGE"
     gene            1013..1486
                     /locus_tag="KIL20_001444"
     CDS             1013..1486
                     /locus_tag="KIL20_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HBD2721461.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            1487..2992
                     /gene="lysS"
                     /locus_tag="KIL20_001445"
     CDS             1487..2992
                     /gene="lysS"
                     /locus_tag="KIL20_001445"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HBD2721462.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFNKDSVGEELYAIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNAEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLVVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMIDFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKVDGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            2989..4233
                     /locus_tag="KIL20_001446"
     CDS             2989..4233
                     /locus_tag="KIL20_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HBD2721463.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVIGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSNGTDNHLVLMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDINNEKLQ
                     ENIKQELKKLASNFIIYERAMF"
     gene            4230..>4298
                     /locus_tag="KIL20_001447"
     CDS             4230..>4298
                     /locus_tag="KIL20_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HBD2721464.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDK"
BASE COUNT         1527 a          479 c          842 g         1450 t
ORIGIN      
        1 tattgtatca tataaattgc aaaatatcct aaacaattta aagcttttta tgatataatt
       61 ttcaaaattt taactttttt attaaggttt aagaaatgca aatagatgag aaattattaa
      121 gcaagcttga aaaattaagt gctttacaaa taacaaaaaa cagaaatgaa accattgtac
      181 agttaagtga aattgtgaat tttgttgaaa aattaaacga acttgatcta gattcccaag
      241 agattactgt aagcactata aaaggtggag ctcctttgag gattgatgag ataagaaata
      301 gcaatgttat tgatgaggtt ttagattgtg ctccaaaaaa acaagaacat ttttttgttg
      361 ttcctaaaat catagaatga ttaacttagc atttagtgct tatttgtaga ataaatttaa
      421 aacaaaaaaa atcagagagt gattgaaatg aatttttatt ggtttgatgc ttttatttta
      481 ggatttacct tgcttttagg gcttaagggt attatcaatg gtttgataaa agaaattttt
      541 ggacttttgg gtattattgg tggtgttttt attgcttcaa aatacgcaac tcaagcggct
      601 gaatttatac aaagtacttt ttataagata gaaaatcaaa gcttagctgg atttgctgga
      661 tttttggcca tattaattat tttttggata gtttgtttgt tggcaggtaa ttttctttct
      721 aagttgatca aattaagtgg cctaggtttt ttagatcgta ttggtggctt tatatttggt
      781 ggggcaaaaa tctttttaat ttttgcaatt ttagtttttt gtgtagcaag aatcgatttt
      841 ttaaatgata aattagataa ttttgctaaa aatagctata ctttgaattt gcttaaagaa
      901 actggatctt ttattatgaa tcaaccttta acagaaaata gtctagatca tgctagtgaa
      961 aagttgcaag atattgtaag tgatttaaac aatactcaaa aaggggagtg atatgctgat
     1021 agaaaatgtg gaatatgatg ttttacttga gagatttaaa aaaatattaa gacaaggcgg
     1081 acttaaatat accaagcaaa gagaagtact tttaaaaact ctttatcaca gtgatactca
     1141 ttacacaccc gaaagtttat atatggaaat caaacaagct gaacccgatt taaatgtagg
     1201 aattgcaact gtttatcgta ctttaaattt gcttgaagaa gcagaaatgg taacttccat
     1261 ttcttttggt tcagcaggta aaaaatacga gcttgccaat aaacctcacc atgatcatat
     1321 gatatgtaaa aattgcggaa aaattataga gtttgaaaat cctattatag aaagacagca
     1381 agccttgatt gcaaaagaac atggttttaa acttacaggg catttgatgc agctttatgg
     1441 tgtttgtggt gattgtaaca atcaaaaagc aaaggtaaaa atataaatgt ttgataatat
     1501 tttagagcag caaagaatag aaaaagccaa ggaattaaaa aatttaggga tcaatcctta
     1561 tcctcatttt ttagaaaaag aaatgtcttt aaagactttt aaggataaat tttcttatat
     1621 tttagagcaa gttgaaaaaa gagatgaaag tgtcaatgct gttgttgcag gacgtttgaa
     1681 acttttgcgt atagctggga aatcgatttt tgcaaacatt gaagatgaag atacaaattt
     1741 gcaaatttat tttaataaag atagtgtagg tgaagaactt tatgcgattt tgaaaaagaa
     1801 tttagaagta ggtgatattg ttttggttaa aggttttcct tttgtaacta aaacaggtga
     1861 gtttagtttg catgcaagtg aagtaaaact cgctacaaaa gctattgttc ctttacctga
     1921 aaaatatcat ggattaacag atattgagca aagatatcgt aaacgttatg ttgatatgat
     1981 aatgaatgca gaagttagaa aagatttttt agtgcgttct aaagtggtga gtttgattcg
     2041 tcattttttt gaaaataaag gctttttaga agtagaaact cctatgatgc atccgattgc
     2101 aggtggagca aacgctaagc cttttgtaac ttttcacaat tctttaggcg tagaaagatt
     2161 tttaagaatt gctccagaac tttatcttaa aagacttgta gtgggtggtt ttgaggcagt
     2221 ttttgaaatc aatcgttgtt ttagaaacga aggtatggat ttaacccata atcctgaatt
     2281 tacaactata gaattttatt gggcttatca taattataaa gatttaatgg atttaactga
     2341 agaacttttt gctttacttt tagataaact taatttggga aaaacaatag aatttgatgg
     2401 aaaaatgata gatttttcta aaccttttga aagaattact tacaaagatg cactttgtaa
     2461 atatggtggt ttggataggg atttaattga agataaggaa aaaattctta ctaaattaaa
     2521 agtagatggt tttgaagcga atgaaaagct tgaacttgga catttacaag ctgaactttt
     2581 tgataattat gtggaagaaa aattgatcaa tcctactttt gtgattgatt ttcctatttc
     2641 cataagtcct ttatcaagac gtagcgatga ggattctcag attgctgaga gatttgagtt
     2701 gtttatttgt ggaagagaat tggcaaatgg ttttaatgag cttaatgatc ctcttgatca
     2761 atatgagaga tttttaaaac aaattgaagc taaaaatgca ggcgatgaag aggcttgcga
     2821 aatggatgaa gattttgtaa atgctttggg ttatggaatg cctccaacgg cagggcaggg
     2881 tataggtata gatagacttg ttatgctttt gacaaataaa aaatctattc gagatgtgat
     2941 attgtttcct gcaatgcgtc cattaaaatc agaactaaag gagaaagaat gagtttagaa
     3001 atgtttgata aagaaatttt tgatttaaca aacaaagagt tagagcgtca atgcgaaggt
     3061 cttgaaatga tagcgagtga aaatttcact ttacctgaag taatggaagt tataggaagt
     3121 atcttgacga acaaatacgc agaaggttat ccaggtaaaa gatattatgg tggttgtgaa
     3181 tttgttgatg agattgaaac tctagctatt gaaagatgta aaaaactttt taattgtaaa
     3241 tttgctaatg ttcagcctaa ttcaggttct caagctaatc aaggtgttta tgcggctttg
     3301 attaatccag gtgataaaat tttaggaatg gatttaagtc atggtggaca tttaactcat
     3361 ggtgcaaaag taagttcttc gggtaaaatg tacgaaagtt gtttttacgg cgtagaactt
     3421 gatggaagaa ttgattatga aaaagtaaga gaaatcgcta agaaagaaaa gccaaaatta
     3481 atagtttgtg gagctagtgc ttatgcaaga gtgattgatt ttgctaaatt tagagaaatt
     3541 gctgatgaaa taggtgccta tctttttgct gatatagcac atattgcagg tcttgttgtg
     3601 gcaggcgagc atccaagtcc ttttccgcac gctcatgtag taagctcaac cacacataaa
     3661 actttgcgtg gtccaagagg tggtattatt atgacaaatg atgaagagct tgctaaaaaa
     3721 attaattctg ccatttttcc aggtattcaa ggtggtcctt tgatgcatgt aattgctgca
     3781 aaagcagtag gatttaaatt taatcttagc gatgagtgga aagtttatgc aaaacaagta
     3841 agaaccaatg ctcaagtttt agctaatgtt ttaatggata gaaaatttaa acttgttagc
     3901 aatggaacgg ataatcacct tgttttaatg agttttttag atcgtgaatt tagtggaaaa
     3961 gatgcagatt tagctcttgg aaatgcaggt attactgcaa ataaaaatac cgttccagga
     4021 gagattagaa gtccttttat cacaagtgga ttaagacttg gaactccagc gcttactgcc
     4081 agaggtttta aagaaaaaga aatggaaatt gtgtcaaatt atattgcaga tattttagat
     4141 gatattaata atgaaaaatt acaagagaat attaaacaag aattaaaaaa acttgcaagt
     4201 aattttatta tttatgaaag ggctatgttt tgatttcacc aatggatatg tcgctaatta
     4261 aaataattgg cgatcattat tatataagac gcgataaa
//
LOCUS       DAEBKH010000125         4228 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.125, whole genome shotgun sequence.
ACCESSION   DAEBKH010000125 DAEBKH010000000
VERSION     DAEBKH010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4228)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4228)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4228
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.125"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..553)
                     /locus_tag="KIL20_001448"
     CDS             complement(<1..553)
                     /locus_tag="KIL20_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HBD2721465.1"
                     /translation="MKKVKNLIVGCGLSGAILAERLASKGQEVLIVDKREHIGGNVYD
                     YKDQESNVTVHKYGPHVFHTSIKEVWEYLSRFTKWHYFMYRVKAFIDGKEVNIPFNLD
                     TLHKVFPEYLAKELEQKLISKFAFNSKIPILELKNANDKDLEFLAEYIYKKVFLGYTV
                     KQWGAKPEELDFSVSARVPVYISR"
     gene            complement(555..1529)
                     /gene="galE"
                     /locus_tag="KIL20_001449"
     CDS             complement(555..1529)
                     /gene="galE"
                     /locus_tag="KIL20_001449"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HBD2721466.1"
                     /translation="MKNILVVGGAGYIGSHTLKHLLDNNYNCIVIDNLIYGHKQAIDK
                     RAKFIHADLLDTFSLTSVFKQEKIDALVHFAAFAYVGESVINPAKYYQNNVVGTINLL
                     NTMLENNVKDIVFSSTCATYGEPQYTPIDEKHPQNPINAYGRTKLMIEQVFADYEKAY
                     GLRHISLRYFNAAGASKDGLIGESHEPETHLIPLVLKAIKGEIPAINIFGNDYDTEDG
                     TCIRDYIHVEDLALAHRLALENLHKFSGCINLGTGIGTSVKEIISAAEIVSGKKCPIN
                     YAPRRAGDPARLYADNKKAKEILFWEAKYTDIKDIIKSAWDWENNREY"
     gene            complement(1526..2824)
                     /locus_tag="KIL20_001450"
     CDS             complement(1526..2824)
                     /locus_tag="KIL20_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HBD2721467.1"
                     /translation="MKIGIIGTGYVGLPTGVGLAELGNDVICIDREKSKIDALNSGIL
                     TIYEDNLEELFHKNIKEGRLKFTTSMQEGIKDADLVIIAVGTPPHPVTKEADMKYIHA
                     AATELADYLTRYTVIATKSTVPVGTGDDIESLISRKNPNAEFDVLSLPEFLREGFAVY
                     DFFNPDRIIVGTNSQRAKAVIEKLYEPFKGKSELLFVSRRSSETIKYASNAFLAIKIH
                     YINEMANFCEKAGADILEVAKGMGLDTRIGKRFLNPGPGYGGSCFPKDTLAMAFMGKQ
                     NDIDLTLINAAIKGNEERKNHMCERILNSIKDIKNPKIAVLGLAFKDGTDDCRESPAV
                     DIVFKLLEQKVKICAYDPKAMDLAKQILGDKIDYANSMYEAIKDADAIAILTEWKEFS
                     SLDLKKAYDLLNHKKIIDLRNLIDKNEAIKLGFEYQGVGR"
     gene            complement(2833..3789)
                     /locus_tag="KIL20_001451"
     CDS             complement(2833..3789)
                     /locus_tag="KIL20_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002912510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HBD2721468.1"
                     /translation="MKVILITGGTGFLGSNLCKRLLSEGNKIICVDNNYTGRMENIKE
                     LLENENFTFIEHDICKPLKITQKLDQIYNFACPASPPAYQGKHAIKTTKTSVYGAINM
                     LELAKEHNATILQASTSEVYGDPLVHPQNEEYRGNVNPIGIRACYDEGKRCAESLFFD
                     YHRHEGVDIKIIRIFNTYGENMDSNDGRVVSNFICQALSGKDITIYGDGSQTRSFCYV
                     DDLIDIIIKVMNSSKDFQGPINTGNPDEFTIKELAQKVIEKTGSKSKIIYKDLPLDDP
                     TQRRPDISLAKAKFNWEPKINLDEGLEKTIKYFKEKITEFKG"
     gene            complement(3839..>4228)
                     /locus_tag="KIL20_001452"
     CDS             complement(3839..>4228)
                     /locus_tag="KIL20_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HBD2721469.1"
                     /translation="TFLPTLLDRTLIIFFIDKDPLLLKNKLQELKDYFKKFHLSGAEC
                     LKYQLSYRLGQFVLSNYRSLRGLIKIVLNAKKMILNIQKEQELFQATIKNYPFIVFSS
                     SSEDLESRKIKKHYSYRLGRFLKIILI"
BASE COUNT         1358 a          773 c          497 g         1600 t
ORIGIN      
        1 cacgacttat atatacagga acccttgcgc taactgaaaa atcaagttct tcgggttttg
       61 caccccattg ctttactgta taacctaaaa aaactttttt ataaatatac tcagctaaaa
      121 attctaaatc tttatcattt gcatttttta attctaaaat aggaatttta gaattaaaag
      181 caaatttact tattaatttt tgctcaagtt ctttggctaa atattctgga aaaactttat
      241 gtaaagtatc aagattaaat gggatattta cctctttacc atctataaaa gcttttactc
      301 tatacataaa ataatgccat tttgtaaaac gacttaaata ctcccatact tcttttatgc
      361 tagtatgaaa aacatgaggc ccatatttat gtacagttac attactctct tgatctttat
      421 aatcataaac atttccacca atatgctctc ttttatctac gattaaaacc tcttgtcctt
      481 tactagctaa acgctcagct aaaatagccc cgctaagccc acaacctacg attaaatttt
      541 ttaccttttt catcttaata ctctctatta ttctcccaat cccaagcact tttaattata
      601 tctttaatat cagtatattt tgcttcccaa aataagattt cttttgcttt tttattatct
      661 gcgtataatc ttgcaggatc tccagccctt cttggtgcgt aatttatagg gcactttttg
      721 ccacttacaa tttcagctgc actgatgatt tcttttacac ttgtacctat tcccgtacca
      781 agatttatac aaccactgaa tttatgtaaa ttttctaaag ctaaacgatg agctagtgct
      841 aaatcttcta catgaatata atctcttata caagttccat cttcggtatc ataatcattt
      901 ccaaaaatat ttatagcagg aatttctcct tttatagcct ttaaaactaa aggaattaaa
      961 tgagtttcag gttcgtggct ttctccgata agtccatcct tgcttgcacc tgcagcatta
     1021 aaatatctta aagaaatatg ccttaaacca taagcttttt cataatctgc aaaaacttgc
     1081 tctatcataa gcttagtcct tccataagcg ttaataggat tttgaggatg tttttcatca
     1141 attggagtgt attgtggttc tccgtaagtt gcacaagtgc ttgaaaatac tatatcctta
     1201 acattatttt caagcattgt atttaaaaga tttatagttc ccactacatt attttgataa
     1261 tattttgcag gatttataac gctttctcct acataagcaa aagctgcaaa atgcactaga
     1321 gcatctattt tttcttgctt gaaaacacta gttaaagaaa aagtatctaa taaatctgca
     1381 tgaataaatt tagctctttt atctatagct tgtttgtgtc catagataag attatctatg
     1441 acaatacaat tgtaattatt atctaataaa tgttttaagg tatgtgagcc tatatatcct
     1501 gcaccaccta caactaaaat atttttcatc tacctacacc ttgatattca aaacctagct
     1561 ttatagcttc atttttatca atcaaatttc ttaaatcaat aattttttta tggtttaaca
     1621 aatcgtaagc cttttttaaa tcaaggcttg aaaattcttt ccattctgtt agtatagcta
     1681 tcgcatcagc atcttttata gcttcataca tggagttagc ataatcaatt ttatctccta
     1741 aaatttgctt agctaaatcc atagcctttg gatcataagc acaaatttta actttttgtt
     1801 ccaaaagctt aaaaacaata tctacagcgg gactttctct acaatcatca gtgccatctt
     1861 taaaagcgag tccaagtacg gctatttttg gatttttgat atccttaata ctatttaaaa
     1921 ttctttcgca catatggttt ttacgctctt catttccctt gatagctgca ttgattaaag
     1981 ttaaatcgat atcattttgc ttacccataa aagccatagc taaagtatct tttggaaaac
     2041 acgaacctcc atatccaggc ccaggattta aaaagcgttt tcctatccta gtatcaagac
     2101 ccataccttt agcaacttct aaaatatcag ctccagcttt ttcacaaaaa tttgccattt
     2161 cattaatata atgaatttta atagccaaaa atgcatttga ggcgtattta atagtttctg
     2221 aagaacggcg acttacaaaa agcaactcgc tttttccttt aaaaggctca taaagttttt
     2281 ctatcaccgc ttttgctctt tgtgaatttg ttcctactat aattctatct ggattgaaaa
     2341 aatcatatac tgcaaaacct tctcttaaaa attcaggtaa agaaagaaca tcaaattccg
     2401 catttggatt tttcctacta attaaacttt ctatatcatc acccgtgcca acaggaacag
     2461 tggattttgt agcaattacc gtatatcttg ttaaataatc tgctaattca gttgcagctg
     2521 catgaatata cttcatatct gcttcttttg taactgggtg tggtggagtt cctactgcta
     2581 taattaccaa atctgcatct ttaatacctt cttgcataga agttgtaaat tttaaacgac
     2641 cttcttttat atttttatga aaaagttctt caagattatc ctcataaatt gttaaaattc
     2701 cgctatttaa ggcatcaatt tttgattttt ctctatctat acaaataaca tcattgccaa
     2761 gttctgctag tccaacacct gttggaagtc caacataacc tgttcctatg attcctattt
     2821 tcatgtatta ccctatcctt taaattctgt aattttttct ttaaaatatt ttatagtttt
     2881 ttctaaacct tcatctaaat ttatctttgg ctcccagtta aatttagctt tagctaaaga
     2941 aatatcaggt cttctttgag ttggatcatc taatggcaaa tctttataga taatctttga
     3001 tttagaacct gttttttcta taaccttttg cgctaattct tttatggtaa attcatcagg
     3061 attgccagta tttataggtc cttgaaaatc ttttgaagaa ttcatcactt taataataat
     3121 atcaattaaa tcatccacat aacaaaaaga acgtgtttgc gaaccatctc cataaattgt
     3181 aatatctttt ccacttaaag cttggcatat aaaattactt acaaccctac catcgtttga
     3241 atccatgttt tctccatagg tattaaaaat tcttattatt ttaatatcca caccttcgtg
     3301 tctatgataa tcaaaaaata agctttcagc acatcttttt ccctcatcat aacaagcacg
     3361 aattcctata ggatttacat tgcctctgta ttcttcgttt tgtggatgaa cgagtggatc
     3421 tccataaacc tctgaagttg aagcttgtaa aatcgttgca ttatgctctt ttgcaagttc
     3481 aagcatattt atagcgccat acacacttgt ttttgttgtt tttatggcgt gttttccttg
     3541 ataagcaggt ggagaagctg ggcaagcaaa attataaatt tgatcaagct tttgtgtgat
     3601 ttttaatggc ttgcaaatat catgctctat aaaagtaaaa ttttcatttt ctaaaagttc
     3661 tttgatattt tccattctac ctgtatagtt attatctaca caaataattt tattgccttc
     3721 actaagcaat cttttacata aattagaacc taaaaatccc gttcccccag tgattaaaat
     3781 aaccttcatt ataaatactt tcttaatttc tataaaactt attataattc aaactagctt
     3841 atattaaaat aatttttaaa aatcgcccta aacgataaga ataatgtttt ttgatttttc
     3901 tactttctag atcttcacta gaagaagaaa aaacaataaa agggtaattt tttattgttg
     3961 cttgaaacaa ctcttgttct ttttgaatat ttagtatcat ttttttagca tttaaaacaa
     4021 tttttatcaa acctcttaaa cttctatagt tagataaaac aaattgccct aaacgataag
     4081 acaattgata tttaagacat tctgctccac ttaaatgaaa ttttttaaaa taatctttta
     4141 attcttgcag tttattttta agcaacaatg gatctttatc tataaaaaaa ataatcaaag
     4201 ttctatcaag caaagtaggt aaaaaggt
//
LOCUS       DAEBKH010000126         4176 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.126, whole genome shotgun sequence.
ACCESSION   DAEBKH010000126 DAEBKH010000000
VERSION     DAEBKH010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4176
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.126"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            162..1019
                     /gene="cheP"
                     /locus_tag="KIL20_001453"
     CDS             162..1019
                     /gene="cheP"
                     /locus_tag="KIL20_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HBD2721470.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMTAKLLQLANSPYYGFTREITTINQVITLLGIGNIINIVTADSIRDSFKID
                     VSPYGLDTQNFLKTCNEEATFITNWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REEVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLEEAKTQGINFDLNNLLSKLPSK
                     AKENLNKED"
     gene            1047..1526
                     /gene="cheQ"
                     /locus_tag="KIL20_001454"
     CDS             1047..1526
                     /gene="cheQ"
                     /locus_tag="KIL20_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HBD2721471.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNVEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(1495..2805)
                     /locus_tag="KIL20_001455"
     CDS             complement(1495..2805)
                     /locus_tag="KIL20_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD2721472.1"
                     /translation="MSKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVLLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKIGIIKSCVFFSVFFGIVSLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALDNLSNFWRFSLGIYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
     gene            complement(2808..2963)
                     /locus_tag="KIL20_001456"
     CDS             complement(2808..2963)
                     /locus_tag="KIL20_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HBD2721473.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYPQNHHKNYNYDDDDYEYDDDNND
                     DDFYEMD"
     gene            3056..3529
                     /gene="moaC"
                     /locus_tag="KIL20_001457"
     CDS             3056..3529
                     /gene="moaC"
                     /locus_tag="KIL20_001457"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HBD2721474.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITSRIATASGMIYMSQEAFDVIK
                     NNTAKKGPVLQTAIIAAIMGAKKTSEIIPMCHPLMLSKVETDIMEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDILLESKEGGKSGKFVRS"
     gene            3507..3770
                     /locus_tag="KIL20_001458"
     CDS             3507..3770
                     /locus_tag="KIL20_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HBD2721475.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHVKASEIFQEILGQREY
                     KFEHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            3760..>4176
                     /locus_tag="KIL20_001459"
     CDS             3760..>4176
                     /locus_tag="KIL20_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721476.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLSKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVTKVIKALVKASIVDAQNSLYEYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCD"
BASE COUNT         1567 a          572 c          621 g         1416 t
ORIGIN      
        1 cgttaaaatt attttaattt gttagttaat taaaaataat ataaaatttt agtatttata
       61 atttttatta tatcttaaag taacaaaaaa tgtaataagt aaattaaaat ttagatataa
      121 tcataaatta taataatact aacttcaagg ataaatcaaa tatgattgga gatatgaatg
      181 agcttttatt aaaaagcgtt gaagtattgc cacctttacc cgatactgta agtaagttaa
      241 gaaaatatgt gagcgaggct aattcaaata tagaaaccat gaaagttgct gaaatcattt
      301 caagtgatcc gttgatgacg gctaagcttt tgcaattagc aaattctcct tattatggtt
      361 ttacaaggga aattacaacc ataaatcaag tgattacttt attaggcatt ggcaatatta
      421 tcaatatagt tacggctgat tccattagag atagttttaa aatagatgtt tcaccttatg
      481 gtttggatac acaaaatttt ttaaaaactt gcaacgaaga ggcaactttt atcacaaatt
      541 ggcttaatga tgaagataaa aaactttctc atcttttagt tccttgcgca atgcttttaa
      601 ggcttggtat tgttattttt tcaaattttc ttatacaaaa tcataaggat aaggattttt
      661 tagctttttt aaataaaaat gaaaatcttg ctttagcgga gaatgaattt ttaggcgtag
      721 atcatatttc tttcttggga tttttgttac atcgttggaa ttttgatgat gttttgattg
      781 aaagtatatg ttttgttcgc actcctcatg ctgctcgtga agaagtgaaa aaatccgctt
      841 atgctttagc aataacagat catctttttg ctccgcatga tggctcttct ccatttaacg
      901 caaaagctgc agttgcttta cttgaagagg caaaaactca aggaattaat tttgatttaa
      961 acaatctttt atctaagctt cctagcaaag ctaaggaaaa tttaaacaaa gaagattaaa
     1021 gagccttttt agggctctaa attgtagtga tgaaaagttt aatcttacct cctaatgaat
     1081 ttttagatca ctatatttta aatgccgaat ttcatcgttt tgctggaatt tcaaaaaatg
     1141 cttataaatt ttggaaaaat gtagaaatag gcagatatca aggaacaaga attatatttt
     1201 tgcatagaaa ttgcatttta gaaaaacatc agcaagcttt aaggcaatgt agtggtttaa
     1261 atggttttgt attggcaagt gctttttgtt cttttactgg attagccccc tctcatttag
     1321 tggaaaaaaa taattcttct atttacaaac ttttagagct taaggagatt tgtgggatta
     1381 aatttgttaa tctaaaaaaa ttttatgatt ttttagggct aaattatcat cagcatattt
     1441 atatagaaaa atgccatttt tttagcccag ctccttttga aaagcgtatt aaaatcactg
     1501 agagtatgtg cgttgggtat tattaagata agaaaaaata aatgcacata gcaaagctat
     1561 aatagccaaa aagaaaacat aaattcccaa agaaaaacgc caaaaattac ttaaattatc
     1621 taaggcaaaa ctatgcaaga aaaaagcaag ttgcggagtt aaacctccag ctatagcata
     1681 agcaatatta tatgaaaaag aaagtcctga aaatttaatt tttgcatcaa atacttcact
     1741 cattattaaa gggcaaaaat tcatcactcc gctaaaaaaa cacacaagta aatataagca
     1801 agctactagg ttaaaatcag cattttgtct atatagagta ttaaaataaa gcaagcttac
     1861 aattccaaaa aaaacactaa aaaatacaca agatttgata atgcctattt tatccgctaa
     1921 aattccactt ataatacacc ctaggcaaat aagtaaaatt ccacctattt gaagataggt
     1981 ttgtatagaa gtgttaattt gaagtatttt tgccatatag ctaggcataa gcaaaatcat
     2041 tacaacaatg caacctgtca aaacccaagt aatcatcata gaaagaacaa ttcccatttt
     2101 agctttttta aacacttctt ttaaaggaaa tttttctaaa gccttgtctt ttttcatttg
     2161 ttcaaaaaca ggagtttctc ttaaaaattt tctcaaataa gcagaaataa tcccgaaaat
     2221 tccacctaaa aagaatggaa ttctccaagc ccattcatga agttcttctt gggtataaat
     2281 tttattcata attaaaaaaa ctaaactacc taataaaatt ccacctacaa ccgaagcggt
     2341 taaaattccc aaataagttc ttttttgacc ttgtggtgcg tgttcgtata caaaaaccca
     2401 agctccagga agttccccgc ctatagcaat gccttgacaa atgcgtataa aaactaaaag
     2461 cacaatacaa agaaaaccta tgctttcata atttggaata aaagctagag taaaagttgg
     2521 aataaccatt aacaaaatac taatcataaa cattcttttg cgtccaaatt tatctccaaa
     2581 atgtgccagt atcacacccc ctaagggacg cgctaaatat ccagccgcaa atattccata
     2641 agtattaaac atttgccaaa aactacttaa atcttttgga aaaaagtttg ttgaaatata
     2701 atttgcaaaa aatacaaaaa taataaaatc ataaaattct aaagttccac ctaatgatga
     2761 aagtcctaaa acttttatat ctttttggtt aagggttttg ctcattctta atccatctca
     2821 taaaaatcat catcattgtt atcatcatcg tattcataat catcatcatc gtaattataa
     2881 tttttatggt gattttgtgg atattcttca tcttcgtttt cataatcatc gtaatttaaa
     2941 tcttcttcat cttcataagc cattgttttc tccttaaata aaaatacaaa gcttatttta
     3001 tcttaaattt gtttggtttt gctataattt ttataatttt ttaaaaggtg aatttatgaa
     3061 attaagtcat ttagatgaaa aaaatcatcc taaaatggta gatgtaagcg ataaaaatat
     3121 tacttcaaga atagccacag ctagtggtat gatatatatg agtcaagaag cttttgatgt
     3181 aattaaaaac aataccgcaa aaaaaggtcc tgttcttcaa acagctatta ttgcggctat
     3241 aatgggggct aaaaaaacaa gtgaaattat tcctatgtgc catcctttaa tgctttctaa
     3301 agtcgaaact gatattatgg aatttgttaa agaatgtgca tttaagctta ttgtaacagt
     3361 taagtgtgaa ggtaaaacag gggttgaaat ggaagcttta agtggggtta gtataggact
     3421 tttaactata tatgatatga ttaaggctat agataaatca atgaggatta cggatatatt
     3481 gcttgaaagc aaagaaggag gcaaaagtgg taaatttgtg cgatcttaaa aaagaacccc
     3541 agatcaatta tcctactttt tgggattata aggtgatttt tgaggtgcat gttaaggcaa
     3601 gtgaaatttt tcaagaaatt ttaggccaaa gagaatataa atttgaacat tcgaattcaa
     3661 gtgcgagtgg aaaatatcaa agttatttat taaatgttta tgttgatagc aaaaaagatc
     3721 gtttggatat atttgataaa ttaaaagcta aagcaaaatt tgtactttaa gaaagaagga
     3781 aaaatgaaaa atactttaat tatttttgaa aattctttat caaatctcag taaagatgaa
     3841 gcaagtgatt tacttgaaga cttgagtttt aatcttgcat ataagcaaat ttcgcataat
     3901 cctcatgaaa caaaaaaagt tttaaattct cttttggttg aatttttaac tattttgaaa
     3961 aaacttgatt tttttgatga tgaaaatgtt acaaaggtta tcaaagcttt ggttaaggcg
     4021 agtattgtag atgctcaaaa ttcgctttat gagtatatta gcgaagctga attattaaac
     4081 aaacagattg aaaatcaaaa aaatttgatt aaaaatcaaa tcagtgataa tttttttgaa
     4141 ttcgagaata ttttacaaga atgttctttt tgtgat
//
LOCUS       DAEBKH010000127         4161 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.127, whole genome shotgun sequence.
ACCESSION   DAEBKH010000127 DAEBKH010000000
VERSION     DAEBKH010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4161
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.127"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            79..480
                     /locus_tag="KIL20_001460"
     CDS             79..480
                     /locus_tag="KIL20_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HBD2721477.1"
                     /translation="MTYNEKIISMNNDLLDHQHKELFEISKKLSLMNQRHVGTKELKI
                     VLRELLIMINRHFSDEEAFMREIEYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVKYYEEKFKK"
     gene            658..1839
                     /locus_tag="KIL20_001461"
     CDS             658..1839
                     /locus_tag="KIL20_001461"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HBD2721478.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIVVTSCATESINWVLKGVYFDHILDKERNEVIISSVEH
                     PAVAAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
     gene            1849..2820
                     /locus_tag="KIL20_001462"
     CDS             1849..2820
                     /locus_tag="KIL20_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HBD2721479.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(2844..>4161)
                     /locus_tag="KIL20_001463"
     CDS             complement(2844..>4161)
                     /locus_tag="KIL20_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HBD2721480.1"
                     /translation="TLKERYISNAVDSYSEILKYLRSNADLLESNYIFSLLELQVWID
                     RINEAIGISFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQLFYRNKNDVDDIKVI
                     FIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVYAVLIAWLILRMLDGY
                     GVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGFNISAIIASLGIGGLA
                     VALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETGLRKTTIRTFDNCLVF
                     LPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVKDLREFLHTSDLVAHD
                     EDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSINIELYFYTKEIGGKD
                     FREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAKAIK"
BASE COUNT         1535 a          614 c          709 g         1303 t
ORIGIN      
        1 aattaattaa taaaatttta agtattatag cattataatc cgctctcgaa aaatataaat
       61 ataaaagtac tcaaaaccat gacttataat gaaaaaatta tttcgatgaa taatgatctt
      121 ttagatcatc aacataaaga actttttgaa atttctaaaa aactctcttt aatgaaccaa
      181 cgtcatgttg gaacaaaaga gttaaaaatt gtcttaagag agttgttgat aatgatcaat
      241 agacattttt cagatgaaga agcctttatg agagaaatag aatatcctta tatcaaccat
      301 catacaagaa ttcatagaaa aattatctta gaaattgaag aaattatcat cagtgaagct
      361 aaatttgtaa atataatgac cgaaaaatta aatctcgttg ttcaagattt tatctttaaa
      421 catacagcca aagaagattc aaagatagta aagtattacg aagaaaaatt taagaaatag
      481 tatttcttat ttttgctata taaaattcac aaaatatttc actttaaaaa tttactttag
      541 cattttattt ttgttataat ttttaaccta atttttataa atttttgtta ttatccgttt
      601 tcaaataaag ataaaaaata tcctaattaa aattaaggat aaattaagga ttttaaagtg
      661 aaagtatatt tagataacaa cgcaacgaca atgcttgatc ctaatgctta tgagttgatg
      721 ctaccttttt taaaggatat gtatggaaat ccaaatagcc ttcatcaata tggtagcgca
      781 acacatcctg ccttaagaga agctttggat aaactttatg caggacttgg agcaaatgac
      841 ctagatgaca tagttgtaac ctcctgtgcg acagaaagca ttaactgggt gcttaagggt
      901 gtgtattttg atcatatttt agataaagaa cgcaatgaag tgattatttc tagcgtagaa
      961 caccctgccg ttgctgctgc tgcttatttt ttaaaaagtc ttggagtaaa agtcatagaa
     1021 cttcctgtaa atgaagaagg ggtttctact gtagaagatt tgcgtaaagt gattagcgat
     1081 aaaacagcgc ttgtaagtgt tatgtgggca aataatgaaa caggtatgat ttttgatatt
     1141 aaagcgatgg cagaacttgc gcatgaattt ggtgctcttt ttcatacgga tgctactcaa
     1201 gcagtaggta aaataaaggt taatttaact caagtaggag ttgattttgc ttcattttcg
     1261 gcacataaat ttcatggacc aaagggtgtg ggtggacttt ttataaaaaa aggacttaaa
     1321 cttactccac ttttacacgg tggagaacac atgggtggtc gtagaagcgg aactttaaat
     1381 gtaccttaca tagtggctat gggcgaggct ttgcgtattg caaatactat gcttgatttt
     1441 gaagattctc atatacgccg tttaagagat aaactagaag atcaaatttt agctttacct
     1501 gatacaacag tggttggaaa aagggaacac cgtgtgccta atacaatctt agcaagtatt
     1561 aaaggcgttg aaggcgaagc gatgctttgg gatttaaata aaaatggtat agctgcaagt
     1621 acgggctcag cctgtgcaag cgaagcttta gaaagcaatc ctattatgga agctatcggt
     1681 gcggaacatg atttagcgca cacagcttta agactttctt tgtcacgttt taacactgaa
     1741 gaagaaattg attatgcagc aaaacaaatt aaaaatgcaa cacagagatt aagagcaatt
     1801 tcttgcactt atgcttataa tccaaataat tacaaataag gatgaaaaat gggaaaaaat
     1861 agtttaattg gtggatccat ttgggatgag tattcacaaa aagttcaaga tagaatgaat
     1921 aatcctcaac atatgggaga atttagtgaa gaagatgcta aagcacgcaa tgcaaaattg
     1981 atcgtagctg attttggcgc agaaagttgc ggcgatgcgg taagactttt ttggcttgta
     2041 gatgaaaaaa ctgataaaat tatcgatgca aaatttaaaa gttttggttg tggtacagct
     2101 atagcaagta gtgatactat ggtggatctt tgtataggaa aaactgtaga tgaagcagta
     2161 aaaatcacaa atttagatgt ggaatttgct atgcgtgata atccagaaac tccagctgtt
     2221 ccacctcaaa aaatgcactg ttcggttatg gcttatgatg taatcaaaca agcagcagcg
     2281 cattataaag gtataagtcc tgaagatttt gaagatcaaa ttatagtttg cgagtgcgct
     2341 agggtaagtc ttggaactat taaagaagtg attaaactta atgatttgca tagcgtagaa
     2401 gaaatcacac aatatactaa agcgggtgct ttttgtaaat cctgtatcaa accaggcgga
     2461 catgaaaaaa gagattatta ccttgtagat attttagctg aaactagagc tgaaatagat
     2521 agagaaaaac tcaaaaatac aatgaaaagt gatgtggctt ttgatgaaat gaccgtagtg
     2581 ggacaattaa aagcagttga aagtgtttta gatgctgaaa ttcgccctat gcttcataat
     2641 gatggtggag atttggaagt gattgatata caaaaggctg aaggtgcagc aattgatgtt
     2701 tatattcgtt atcttggtgc ttgtagtggt tgttctagtg gaagtggtgc aacactttat
     2761 gctattgaaa caattttaca agaagaatta agtccaaata tacgcgttat gccagtttaa
     2821 aaaaatagca agataaaatc ttgctatttt atagcttttg cttgcaaatc aaggggtggt
     2881 aaattttcta tataaatact acgacttggg aaagcaaagg ttaaaccatt tttttcaatt
     2941 atacgcataa actcaagcat taaactttgt ctagcttctc taaaatcttt tccgcctatt
     3001 tctttggtat aaaaataaag ctctatatta atactactat ctgcaaattc acttaaagcc
     3061 acataacaag catttttata gccttctaaa tcattaatag atacaagatt ttgacgatat
     3121 tttgttgtat gatcgccata ttttaatgcg ctatcctcat cgtgagctac taaatcactt
     3181 gtatgcaaaa attctcttag atcttttaca cattgttcta gtttttcagg agtagcatca
     3241 taaccaacac ccaaatacat tctaacatgg cgacccatgc gtcttttgct ccaatttttg
     3301 atattagctc ccataatagt tgaatttggt aaaaatacaa gacaattatc aaaagttcta
     3361 atagtagttt ttctaagtcc tgtttcaacc acggttcctt ctatgcctga aacctctacc
     3421 caatctcctt gattaaagct attatcaaaa agtaagagta tagaagcaaa gaaatttgca
     3481 atgatatctt tcgccgctaa agcaacagct aaaccaccaa ttcccaaaga tgcaataata
     3541 gccgaaatat taaaaccaag ttgagcaaga atatataata aagctatgat aataatgaca
     3601 aaatataaaa ttttaataat taaatttaca acttcttttt ttccactttt ttgagcaagt
     3661 ttagaaacca ataccacgcc ataaccatca agcattctta aaataagcca tgcaattaaa
     3721 actgcataaa ctatatgaaa aaaattactt aaatttacac tcaaaggtgc aggataagtt
     3781 gctatagtaa gacaaagaga aatagcatag acaatcaaca agaaacctac gggtttttta
     3841 atattctcaa taaaaatgac tttaatatca tctacatcat ttttatttct ataaaaaagc
     3901 tgaacaagga aaaaatatac tatatttgca aaaaaacgtc ttaaagatat aaaaaatact
     3961 aaaaccaaag cagaaattac tatttttccg atattaacaa aacttatccc aattgcctca
     4021 tttatacgat ctatccaaac ttgaagctcg agtaatgaaa aaatataatt actttcaagc
     4081 aaatctgcat ttgagcgtaa atacttaaga atttcagaat aagaatctac agcattactg
     4141 atatatcttt cttttagggt a
//
LOCUS       DAEBKH010000128         4083 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.128, whole genome shotgun sequence.
ACCESSION   DAEBKH010000128 DAEBKH010000000
VERSION     DAEBKH010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4083)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4083)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4083
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.128"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            168..659
                     /gene="mobB"
                     /locus_tag="KIL20_001464"
     CDS             168..659
                     /gene="mobB"
                     /locus_tag="KIL20_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HBD2721481.1"
                     /translation="MKQLIMAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLAPNFDICLVEGLKT
                     LDLPRISVFCKEIDESYFTFSNAIASYEKISHPYLTWLDLNDIQAICRYILKNAKNLQ
                     GEL"
     gene            661..1503
                     /locus_tag="KIL20_001465"
     CDS             661..1503
                     /locus_tag="KIL20_001465"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HBD2721482.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DGIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLKMNKKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNHSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            1496..1693
                     /locus_tag="KIL20_001466"
     CDS             1496..1693
                     /locus_tag="KIL20_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721483.1"
                     /translation="MSDIRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            1703..3589
                     /gene="metG"
                     /locus_tag="KIL20_001467"
     CDS             1703..3589
                     /gene="metG"
                     /locus_tag="KIL20_001467"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HBD2721484.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKNTTILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQSGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYISSLDFQSKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDAYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNILKEGVLKYYNTELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSCEKVALALNFEISSTNYAKMILDNELLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKHYKASDLIGKQVCIISNLKKAKIFGHESDGMILSAKSGDKLVLITPEQLVQNG
                     SLVG"
     gene            3593..>4083
                     /locus_tag="KIL20_001468"
     CDS             3593..>4083
                     /locus_tag="KIL20_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721485.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFFNNDK
                     KEITQAVKKGAYAIITENDITIEDKDIFYFRVENLEQALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCAYSHSLKDANF
                     TLLS"
BASE COUNT         1534 a          600 c          657 g         1292 t
ORIGIN      
        1 cacaatcgcc tgatctttta aagaacaagc tccaagcaaa aaagcaccta aaattacact
       61 ataaattttc attctttttc catatttttt agtattattg tagcctttta accctatttt
      121 ttggtttaaa aagatataat tttacaaaaa aattaagagt atattttatg aaacaactta
      181 tcatggcttt tagcgggcct tcaaattcag gaaaaactac acttatcaca aaaatagctg
      241 ataatttttt gcaacaaaat ttaaaagttt taatcattaa acatgatcct gccgataaag
      301 ctcaatttga ttttaacggt aaagatagtt ttaaattttt ccaaagcgga gctgaagtca
      361 tggttttaag ccctacaaga acaacttttt tttctcatga aaatagagat attttaaaag
      421 ctttaaaatt agcacccaat tttgacattt gtttggttga aggattaaaa actcttgatt
      481 taccacgcat tagcgtattt tgcaaagaaa ttgatgaaag ttattttact ttttcaaacg
      541 ctattgcaag ctatgaaaaa atttcccacc cttatcttac ttggcttgat ttaaacgata
      601 tacaagctat ttgtcgatac atacttaaaa atgctaaaaa tttacaagga gaattataaa
      661 atgcaagaag tgatttctta tatacaaaaa gcggttttag aaatttctaa cgctttaaaa
      721 tttcccgata caagctacag tcaaaatcaa aattttacag gcgataccca actcaaattt
      781 gatgttttaa gcgatggaat catcacaaaa actctaagtc aatgttcaag cattaaagcc
      841 atcataagtg aagaaaaaga cgaaatttta acgcttaacg agagggcaaa ttttatcgta
      901 gcttatgatc ctttagatgg ttctagctta atggatgtta attttgccat aggttctatt
      961 tttgccatct atgaagaaaa agcaagtgct aaaaatttaa gagctgcact ttatagtatg
     1021 tatggagcgc gcttagaact tgtgatttgc aaagatcagc caaaacttta tcgcttaaat
     1081 gcaaataatg aatttatttt tataaaagat cttaaaatga ataaaaaagg caagattaat
     1141 gctacaggcg gaacgcaaaa attttgggaa gaaaaacatg ccaaatttat caaaagtctt
     1201 tttgatgaag gctatcgctt aagatattct ggagccatgg taagcgatat caatcaaatt
     1261 ttattaaaag ggggtggcat ttttagctat cctgcaacac aagatgcgcc taatggcaaa
     1321 cttcgtgcct tttttgaagt ctttcctcta gcctttatca tagaaaaagc aggcggaaaa
     1381 actacaaatg gaaaaaacca ctccttactt gaacttgaat ttgataaaat ccatgcgaca
     1441 actccttgtt tttttggctc agaatatgaa atttcaaaac ttttaaaggc ttataatgag
     1501 tgatattaga gatgaatttg agcaagatat ggataaaaaa aaagaaattt tactttcatg
     1561 tcaaaactca aaaaacctaa actcttgtta taattgcgat gaaattttta actgccaaac
     1621 tagaaaaaat tatgttgatg cagtctataa cagtatgtct aagggtaaaa ccgaaggcgg
     1681 atttgacttt taaaggaaaa aaatgcgtta tattacaaca ccaatttatt atgtaaatga
     1741 tgtgcctcat ttaggtcatg cttatactac catcatagcc gatactttag caagatttta
     1801 tcgtttgcaa ggacatgaaa caagatttct aacaggaaca gatgagcatg gacaaaaaat
     1861 cgaagaagct gccaaactaa gaaattccac tcctcaagaa tatgctgata aaatcagttt
     1921 tgaatttaaa aaattatggg atgaatttga aatcacctat gatatttacg caagaacaac
     1981 tgatacaagg catattgaat ttgttaaagc tatgttttta aaaatgtggc aaaaaggcga
     2041 tatttataaa gatgaatacg aaggacacta ttgtatttct tgcgaaagct tttttactca
     2101 aagtcagctt atcaatgatt gttcttgtcc agattgtggc aaaaacacta cgattttaaa
     2161 agaagagagt tattttttta aactttcaaa ataccaagat aaaattttac aatggtatga
     2221 agaaaaagat cccatcctac caaaaaacaa aaaaaacgaa cttataaatt ttgtccaaag
     2281 cggccttaaa gatctttcca ttacaagaac aagttttgat tgggggatta aactgcctca
     2341 agaaattaat gatgataaac atattattta tgtatggctt gacgcacttt ttatctatat
     2401 aagctctctt gattttcaaa gcaagggaga aaatgctaaa ttttggcctg cgcatgtgca
     2461 tttagtagga aaagatattt tgcgttttca tgccatttat tggccagctt ttttaatgag
     2521 cgtagattta cctttgccaa aatttatagg tgcacatggc tggtggacta aagaaggtga
     2581 aaaaatgagc aaatctaaag gcaatgttgt aaaacctaaa gaagtggttg atgcctatgg
     2641 aagcgaagct tttagatatt tcttgcttag agaagtgcct tttggtaatg atggggattt
     2701 tagcgaaaat atgctgataa atcgtatcaa tgctgaacta agcaatgaat ttgggaattt
     2761 gcttaatcgc attataggta tgagtacaaa atattctcaa ggaaatattt taaaagaagg
     2821 tgttttaaaa tattacaata ctgaactaaa tcaagcaaaa gaacacttaa atttagcggt
     2881 agaattttta gaaaacttac agtgtaatcg ttatttagaa gaacttttta aagccttaag
     2941 cgtagcaaat ttagccatca gcaaatacga accttggaat ttaatcaaag aaaacaaaca
     3001 cgaacaagct aacgctttag ttgcactttg tgcaaatatt ttagccaaaa caagcctttt
     3061 attaagccct actctaccaa agtcctgtga aaaagtggct ttagctttaa attttgaaat
     3121 ttcatctaca aattacgcaa aaatgatact tgataatgaa cttttagatt ttaaagcaaa
     3181 tccttgcgaa gctttatttc caaaagtaga aaaagctctt ttaaaacaag aaattaaaga
     3241 agaacctaaa aaagaagaaa gtcctaaaat aaaaatcgat gattttgcaa aaattgaaat
     3301 caaagtcgct aaggtgcttg attgtcaaaa tatagaaggg agtgaaaaac ttttgaaatt
     3361 tcaactcgaa cttgacgata aagaaatccg tcaagtactc tcaggcatag caaaacacta
     3421 taaagccagt gatttaatcg gtaaacaagt ttgcattata agcaatctta aaaaagctaa
     3481 aatttttgga catgaaagcg atggtatgat actttctgca aaaagcggag ataaacttgt
     3541 tttaatcacc cctgaacaac ttgtacaaaa cggttcttta gtaggctaaa atatgcaaat
     3601 tagcaattta ggtgaacttt taaacgcaac gctcattcat gaaggtagcg ttttaagtgt
     3661 ggaaggtttt gccataaatt taaacgaact taaagcaggc tttgccttct ttaataacga
     3721 taaaaaagaa attacccaag ctgtaaaaaa aggcgcttat gctataatta cagaaaatga
     3781 cattactatt gaagataaag acatttttta ctttagagta gaaaatctag aacaagctct
     3841 tgtaagattt ttacgctttt tttgtgaaga taaagaatgt gaatttttac tttttaaatc
     3901 ttacgaacta agtctttgca aggcttttta ttttaacatt ttaaaaggaa atatttttgc
     3961 tgattttgaa aaactaatca aagcaaaaaa gggtgaaatt ttttgttact gtgaagaaaa
     4021 ttacttaaat aaactttgcg cctattctca tagtctaaaa gatgctaatt ttaccttatt
     4081 atc
//
LOCUS       DAEBKH010000129         4037 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.129, whole genome shotgun sequence.
ACCESSION   DAEBKH010000129 DAEBKH010000000
VERSION     DAEBKH010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4037
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.129"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..615
                     /locus_tag="KIL20_001469"
     CDS             <1..615
                     /locus_tag="KIL20_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD2721486.1"
                     /translation="FKKIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSNIQKDH
                     IFQSDKNFSELRAFCNASDEYFLKDFKELLFKSILELDLFFEKLNLKAFTNYENATKL
                     SLAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNELNVYEFEALLINKPILTK
                     IAKNFLEQSQNLIQEKNKFLDLKKAELQKRRAQILNVRESIKED"
     gene            615..1319
                     /locus_tag="KIL20_001470"
     CDS             615..1319
                     /locus_tag="KIL20_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HBD2721487.1"
                     /translation="MRIFLALFLFFNSLFALSELEEGLKLYEANKFDKAYEIFKNLCE
                     KDISKACFSLAFMHESAKGVSKDLNQAYKFYDKACKLGLANACSNMALLLQNQGYKNE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGEACYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            1455..2183
                     /locus_tag="KIL20_001471"
     CDS             1455..2183
                     /locus_tag="KIL20_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HBD2721488.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKVRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFMEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMSLADMES"
     gene            2185..3906
                     /locus_tag="KIL20_001472"
     CDS             2185..3906
                     /locus_tag="KIL20_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HBD2721489.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNFIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVGGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
BASE COUNT         1438 a          530 c          771 g         1298 t
ORIGIN      
        1 tttaaaaaaa tcaaaaatga actttataaa tcttttgaag aaattaagat gaaattaaaa
       61 gattttataa acatacttga aagagaaatt ttgcttttta aagcagaatt ttcaaacata
      121 caaaaagatc acattttcca aagtgataaa aattttagcg aattaagggc tttttgcaat
      181 gcaagcgatg agtacttttt gaaagatttt aaggagcttt tatttaaaag tattttagag
      241 cttgatttat tttttgaaaa attaaatctt aaagctttta caaattatga aaatgctacg
      301 aaactaagcc ttgcattttt tagtcgtaaa atcaatgaaa gccgtgttct ttatgagctt
      361 gatagttctg aatttgtact tttttatccc aaaaaaagtg aaatttatga aagagtttta
      421 aatgaattaa atgtttatga gtttgaagct ttgcttatta ataagcctat tttgacaaaa
      481 attgcaaaaa atttcttaga acaaagtcaa aatttaatcc aagaaaaaaa taaattttta
      541 gatcttaaaa aagcagaact tcaaaaaaga agagcgcaga ttttaaatgt tagagaaagt
      601 ataaaggaag attaatgaga atatttttag ctttattttt attttttaat tcattatttg
      661 cattaagtga attagaagag ggtttaaaac tttacgaggc aaataaattt gataaagctt
      721 atgaaatttt taagaatctt tgtgaaaaag atatttctaa agcttgtttt tctttagctt
      781 ttatgcatga aagtgctaag ggtgtgagta aggatttaaa tcaagcttat aaattttatg
      841 ataaagcttg taaattgggt ttagcaaatg cgtgttctaa tatggctttg cttttgcaaa
      901 atcaaggtta taaaaatgaa gctcttttgg cttttaataa agcttgcact ttaggagaat
      961 cgttaagttg taataatata gctttatttt atgaaaaaga aaaagatgga caaatggcct
     1021 caagttttta taaaagatct tgtgacttaa aaaatgcaag agcttgttat cagttaggat
     1081 ctttatatga taaaggagaa cttgttaaag caagtgtaaa atctgctctt gctttttatt
     1141 ctaaatcttg cactttaggt tttggtgagg cttgttattt gctaggacgc tataatcaac
     1201 tagaaaaaca agatctaaca aaggcaaaaa gatattttgg aatggcttgc gatcaaaaac
     1261 atcaagaagc ttgcgcagct tataaagaac ttaattctaa agatatagag ctttattaaa
     1321 agttctattt tcattacttt caaagatata cttaaataaa attaagaata acacaaaatt
     1381 tatcgctttt taaagttaaa tttatattaa taggactaat atagtcttgt ttaaattatt
     1441 atcaaggaga agtaatgcaa gacaatatta ttgatcgcag aagctttttt aaactagggc
     1501 ttctaggtgg ttctgtagta gcagctagca ctataggtgg cggtgctgtt ttaaaggcag
     1561 cagaacttac gcattcgcat caagcttcac aagggaaatc aaataaagtt agaggtagaa
     1621 tgttttttca aactcaaact gaatttgata ccttaagtgc agcctgtgaa agaatttatc
     1681 ctaaagatga gcaaggagaa ggagctatag gtttaggcgt gccttatttt atcgataatc
     1741 agctagctag tgcttatggt tataatgata gagaatatat gcaagggcct ttcatggagg
     1801 gcaaagccga acaaggctat caaactccta tgcaacgcaa agatattttt ttagaaggtg
     1861 tgcatgctct tgaagaaaat gctcaaaagc gttataaaaa atctttttct ttgcttaaag
     1921 gtggagatca ggataaaatt ttaagcgatt ttgaaaaagg aaaaattcaa actacaggtt
     1981 ttaaatcttc ttattttttc acacttttaa gagatatgac agtagctgga gttttagctg
     2041 atccaattta tggcggaaat gataataaaa atggttggag aatgatgcaa tatccaggtg
     2101 cacaaatgag ctatgtggat aaaattgcaa gtgatgaatt ttttaacatt gaacctatga
     2161 gtttagcaga tatggagagt taaaatggct gaagtattaa aaaaagtaga tgtggtaaca
     2221 gttggagcag gatggactgg aggtatagtg gctgcagagc ttactaaagc aggtttgaat
     2281 gtacttagtt tagaacgcgg acatatgcaa agtactgaaa attttaattt tatccatgat
     2341 gagtggagat acgggattaa ttatggtttg atgcaagatt gctcaaaaga cactgtgact
     2401 tttcgtcatg atcctagtgg tttagccttg ccttatcgta aaatgggttc gtttttattg
     2461 ggtaataatg ttggcggtgc aggggtgcat tggaatggtt ggacttttag gtttatgcct
     2521 tatgactttg aaattcaaac cctaagcaaa caaagatatg gtaataaatt aggtaatgat
     2581 tataccttgc aagattgggg cgtgacttat aaggatatgg agccttatta tgatagattt
     2641 gaaaaaacct gcggggtatc aggtgaacca aatcctttag cggaaaaaat gggagctttt
     2701 agatccagtc cttatccaca agaacctctt gaaaatacta aaatgcttaa acgatttgaa
     2761 agtgcagcaa aaagttcaaa tttacacact tatcgtttgc cagcttcaaa ttctaaaggt
     2821 ggctatacaa accctgatgg tcaagattta gctccttgtc aatactgtgc gtattgtgag
     2881 cgttttggtt gtgagtatgg cgcaaaagca agtcctttaa acacagtaat tccaaaggct
     2941 atgagcacag gtaaatacac catacgcact tatagcaatg taacgcaaat tcttaaaaaa
     3001 gacggaaaag taacgggggt aaaatttgtc gatactagaa cgatgaaaga gtatatccag
     3061 cctgctgata tagttgtact tacaagttat atgtttaaca atgctaagct tttaatggta
     3121 agcaacatag gcgagcaata cgatccaaaa acaggtaaag gaactttagg tagaaattat
     3181 tgttaccaaa tgaatatggg cacaacagct ttctttgatg agcaatttaa cacctttatg
     3241 ggttcaggtg ctttaggaac tacgagtgat gattttaacg gagataattt tgatcattct
     3301 aaggaaaaat tccttcatgg agctatgatt tatagcgttc agcttggaac tcgccctata
     3361 caatcagccc cacttccagc aggagctcca acttggggtg ccgaatttaa aaaagcatta
     3421 aactataatt tcacaagagc tattacagta ggagggcaag gtgcttcttt gcctcataag
     3481 aataattatt taagtcttga tccaacttat aaagatgctt ttggtatgcc acttttacgc
     3541 ttaacttata atttcaccga tcaagataga gctttgcata aatttatcac agataaaaca
     3601 gctgaggtag caaaaagaat gcaaggagta aaatcaatca aaaaaggtgc ttatcttaag
     3661 gattatagcg ttgtgcctta tcaatctact cataacacag gtggaacaac catgggcgca
     3721 gatagagaaa ctagtgtggt taatacttat ttacaacact gggatgcgga taatcttttt
     3781 gttgtaggag caggaaattt ccaacacaat agtggatata atccaactga tactgtggga
     3841 gctttggctt atcgctgtgc tgaaggtatt ttaaaatatc ataaaagtgg aaaaagctta
     3901 gcttgataat aacttgagag tttttgaaaa ctctcaagat tataaatttt taattttctt
     3961 ccgatatagt atataatatc aaggaaagca aaaatgatta atggtataaa ttcttattca
     4021 aactacaatt atacaaa
//
LOCUS       DAEBKH010000130         4034 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.130, whole genome shotgun sequence.
ACCESSION   DAEBKH010000130 DAEBKH010000000
VERSION     DAEBKH010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4034
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.130"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(296..1195)
                     /locus_tag="KIL20_001473"
     CDS             complement(296..1195)
                     /locus_tag="KIL20_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721490.1"
                     /translation="MHLNEAKGFMEKGDEAFKKAFANNIGQEIQNRTDLTSEEKAEIA
                     LAASAHAGFSVLGNGAEIQSSASSKRGIGNVETFSEAQKAAYNEIMERASLKTLSTTK
                     GMDSSWSNTLSGGDSTAYSKMVGYTQSYTQTEQGIQSVSTNNIDNTLNVVARDLAAGD
                     NKDFSNLNTAQQNEYFAKADNYVSDMVKNDPAQLAQYNSQYGAQSIVSPNNTTMPHAA
                     GMNFKTIDGSERSVLTQSNLNQDQVNQSSKRTSNTTTMPDSQEVKSGATHSQIAQDNK
                     KGSNAIRETSKNWNPIGKDTPSI"
     gene            complement(1251..3025)
                     /locus_tag="KIL20_001474"
                     /pseudo
     CDS             complement(1251..3025)
                     /locus_tag="KIL20_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871454.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
     gene            complement(3291..3754)
                     /gene="traN"
                     /locus_tag="KIL20_001475"
                     /pseudo
     CDS             complement(3291..3754)
                     /gene="traN"
                     /locus_tag="KIL20_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853989.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraN"
BASE COUNT         1288 a          718 c          594 g         1434 t
ORIGIN      
        1 gtgttgtttt tttcaatttt aagtttttat atgatttttc taaaaaacag aaatacagaa
       61 aaaagggaaa ctaaaataat taataaaatt ttatttctct tatgttttct cttactaatt
      121 tcaatttcga ttttaattgg agtttattta ggagtattaa caactgttaa atctgtcgta
      181 attgctttta ttgcattagt ttttatatta tcgttgtttt ttatagcttt ttctgtaaat
      241 tgtgctattt tagattctat tttatcttta aacaaaaggc tataaagcct tttgtttaaa
      301 tagaaggagt atcttttcca ataggattcc aatttttaga agtttcccta atagcattac
      361 ttcctttttt attatcttga gctatttgcg agtgagttgc tccgctttta acttcttgac
      421 tatctggcat tgttgtagtg ttgcttgttc ttttactact ttgatttact tgatcttgat
      481 ttaaattaga ttgagttaaa acacttcttt ctgatccatc aatggtttta aaattcatac
      541 ctgcagcgtg tggcatagta gtgttatttg gactaacaat gctttgagcg ccatattgac
      601 tattatattg tgcaagttgt gcaggatcat tcttaaccat atcggataca taattatctg
      661 cttttgcaaa gtattcattt tgttgagctg tattaagatt gctaaagtct ttattatctc
      721 cagcagcaag atctcttgca accacattaa gtgtattgtc aatattatta gtactaacag
      781 attgaatacc ttgttctgtt tgggtatagc tttgagtata tccaaccatt tttgaataag
      841 ctgtagaatc gccacctgaa agcgtattac tccaagaaga atccatacct tttgtggtag
      901 atagagtttt aagagaagct ctttccatta tttcattata tgcagctttt tgagcttctg
      961 aaaaagtttc aacatttcct atacctcttt ttgaacttgc acttgattga atttcagcac
     1021 catttccaag aacgctaaaa cctgcatgag cagaagctgc taatgcaatt tccgcctttt
     1081 cttcgctagt taaatcagtt ctattttgaa tctcttgtcc aatattattt gcaaaagcct
     1141 tcttaaatgc ttcatctcct ttctccataa atcctttagc ttcatttaaa tgcacttgct
     1201 ctaccgcttt gactcatatg tgaatattga tcattaaagt ttttattcca agcatcagaa
     1261 tttgcttgag atacgctatt aacagttgtc atagttcctg cgctaagttt ggcgcctgac
     1321 atcataccat caacatttgt tcctgtcata tttgcattag agatttcaga attctttgta
     1381 ttatcaccca taactgattg agtattaaat ttagtaacca caccatctat atttcttgca
     1441 tattgaagcg atgctacccc tgcattcatc gaccaaactt catctcctct aggagtagca
     1501 atgctagttt gtgtagataa ggcttgctga tttgcaaagc ttccagcagc ttttgaagca
     1561 cctgttagag cttgagataa tccagaagca aaagttacaa atccttgctc acttgcttta
     1621 gctatagcat aagctaaaac aggagtactc attacaaggt aattcatgaa atttgatcta
     1681 tttgctactt ctttaaagat aagcatgtta tctcctaagc ttaaagctgc ttttccacct
     1741 gttattactt gtgcaacatt cataagatta aaatcattta taaaattaat aatacaaagt
     1801 ataggagtcc aaagcactat ccaaatacat agagtaaaaa acatcttaat atgtgcgtaa
     1861 gagccaaaca caatagaaag caaagcaaca agccaagaca aacctatgat gatagctgtt
     1921 aaataagctt tagctaaagg caaataagtt tgcgccaagt gtccttgtgc ttgtgcatac
     1981 ttgcgtaaaa ttgctgatcc gcataagcag tatttgcagc cacagaagca ggatttaatc
     2041 ctactgattt agcggtatta atgattgcat tttgagaagc aagcattatc atggattgtt
     2101 gcaaataaga tctagcactt acagcttgtt cgttatagat ttgtgcagcg cctaagaact
     2161 tttgctcata atttgtcata tcatctacca taccaagcaa agcagcatgg atcttcatag
     2221 cttcatctgt atctttttga atcatttcaa cgatttgagg acctgcatca gaacaaggca
     2281 caacactttg ttcttcaata ttattgttat ttgtgaacaa aggagtaagc tgagagccat
     2341 tgcctatgtt tgtgaaaaga tcttgcatta aattatcaga gttttgaaaa agatttctac
     2401 cttgttgatt aagcaagata cctactgaaa cgcagtttct aaagtaaaaa tcaatatttt
     2461 tttgcaaagt tgcatcaata gccgaaagct ttacacttgg taaagtactc attacttgaa
     2521 gtgaaaaacc taaacctgca ttagagaaat ttgtagattg tggagttgaa aaatgttttt
     2581 ccatagcttc taagataacc ttctcaaatt gtgtcattaa tgcaaagctt tttcctatac
     2641 ctataggaat ttgagaaatg acataatctt tgctagtgac ttcatcatga atcatgaagc
     2701 ggtgattatt gtcatttggt gcttttaaaa acatgaccca cactacagca aaaagtacaa
     2761 acatttttcc aaattcaaac acagggtttg tttgtccatc cattgctttt ttaatactaa
     2821 aaagtaataa tgaaatagct aaggctgcat taacgatata acttgtttca gtggttattc
     2881 ctttaaccgc ttgcatgatt tcattcatta catcgccgta accccaagta taaattagat
     2941 ttccattagc tatttcagtt gcaccaaata aaaatgaagg tgcaaaaaac aaagtgctaa
     3001 ggaataacaa gtaaaatctt ttcatggact atattaaaga agttaaagag tttgtttggt
     3061 ataattgcat taagggtttt gccacaaggc tgcaaccctg tggcataatc acaccctaga
     3121 aagggggtga actatatgac acgactcata cttataatta tactaatttg tataattact
     3181 gtcaaggctt attagccttg ccccttttct taaggggcga aactcccttg tggcttacca
     3241 aacaaacttt taactaagct tctctccttt ctaataattt attttctttt ttaatttgta
     3301 ggttttttcg ttacattctc gatattgttt tgaatctttt cttgtatttt cacagaatca
     3361 gcttgtattt ttcctgtgtc aaaacttcct acaatatcag caatgaattc acttaaatca
     3421 atttcgctaa aatctaattt ttgaaattct tcaggagtga agcctttgca ttgcggacct
     3481 tccgcactac tccacccttt tccaagctga gggcgtcctt gttcattgaa aattcttcct
     3541 aatttagaat tgaagcaaca aaaacttttc ttttttcaac gcaaatttta gtaaaaccta
     3601 aactaacctt tttagaacaa taagttccta cttcatgaca ttttcctgca tcgtttaatt
     3661 tagcaagctt tttcttatct tctttacaag gtacaaatcc taaaaataca ttatccttat
     3721 cacaacatcc accaccaagt aaaccgccaa acatatccca atttttacaa cgattatctt
     3781 gtccattgaa tatttataga tactgaacta tttgaaacct tattattaaa aaatacaaaa
     3841 tcagcgcaaa tgtgaaaaaa ccgctataca accttaaaga aattgaaaaa aataatttca
     3901 aattcaaatg atgcacagtg aaaataagaa aagcaataag ataaactttc aaaataaatc
     3961 tgtcttattg cgtgaatatt aaaaataaaa ataactaaag cagatgatct ccgcctaaat
     4021 aagtttaaaa atat
//
LOCUS       DAEBKH010000131         4030 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.131, whole genome shotgun sequence.
ACCESSION   DAEBKH010000131 DAEBKH010000000
VERSION     DAEBKH010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4030
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.131"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..115)
                     /locus_tag="KIL20_001476"
     CDS             complement(<1..115)
                     /locus_tag="KIL20_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD2721491.1"
                     /translation="MLYKRKNIKFKNFVDLHKNLSLSKLFDFYSVFEGFEKL"
     gene            151..1425
                     /locus_tag="KIL20_001477"
     CDS             151..1425
                     /locus_tag="KIL20_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HBD2721492.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTY
                     ANTHSDSSLNSFKTQQTYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISKMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEA
                     LEEGGTPGILQLIRASLAFKIKDSIGIKNIEKKEEILKDYFFEKLKTIPNLILYAKNL
                     KTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKP
                     GWLRISLHYTHEKEDIDYFFNALNKTIVKLSH"
     gene            complement(1422..2246)
                     /gene="purU"
                     /locus_tag="KIL20_001478"
     CDS             complement(1422..2246)
                     /gene="purU"
                     /locus_tag="KIL20_001478"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HBD2721493.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVLPVNHEFTWQDMQQAGRNIEKDVLSKALDLAFEDRIFIHNNKTIIF"
     gene            complement(2243..3361)
                     /locus_tag="KIL20_001479"
     CDS             complement(2243..3361)
                     /locus_tag="KIL20_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HBD2721494.1"
                     /translation="MQISKISLKNNSDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKLKDFEKIMQKLGAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGAGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELGLEKQVFGFESVFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     KKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLVK"
     gene            complement(3330..3821)
                     /locus_tag="KIL20_001480"
     CDS             complement(3330..3821)
                     /locus_tag="KIL20_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HBD2721495.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQSEILNP
                     SVITEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(3818..>4030)
                     /locus_tag="KIL20_001481"
     CDS             complement(3818..>4030)
                     /locus_tag="KIL20_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721496.1"
                     /translation="EAQGLKDEALEIYKNILKEDPDNQNAIDAVRRLSGFRSKHKDLN
                     TQMLDFFINMKSDEEINEFKRWLIKI"
BASE COUNT         1393 a          689 c          484 g         1464 t
ORIGIN      
        1 ttaatttttc aaaaccttca aacacactat aaaaatcaaa aagcttgctt aaagacaaat
       61 tcttatgcaa atctacaaag ttcttaaatt ttatattttt ccttttataa agcattttta
      121 tagtataatt ttagcaaatt tttataagga ttgtatttgc aaatttcaga tttaaaaaaa
      181 gaattgatct taaaaaaagg tattttgcat tttgacttca cagcaagtgc tttagctcta
      241 aaatgcgtag aaaaagaaat ttcaaaaatt ctcccaacct atgcaaatac acattctgat
      301 agctctttaa attcttttaa aactcaacaa acttacgaac aagcaagaaa agatataaaa
      361 aaaagtttat cattagatga aaattttgcc cttatagctt gcggaacagg atcaagcagt
      421 gctattaaaa aatttcaaga attgatcggc atttacattc cccctcttgt aaaagaaaga
      481 tattttacgc aaatcgataa aaatacctta cctttagtta tcgtagggcc ttatgagcat
      541 cattctaatg aactttcatt tcgagaaggc ttatgtgaat gtattagaat tcccttagat
      601 aaaaatggag aaattgattt tgattttcta gaaaaaactt tacaaaaaaa taaaaaaaga
      661 aaaataatcg ctagcttttc tttagcttca aatgttactg ggatattaag tgattacaaa
      721 cgcatttcta aaatggttcg taaatttaaa gggatagttg cttttgatgc atctagtttc
      781 attccctata aaaacatatc ttgtcaatac tatgatgcgt tgtttataag ttctcataaa
      841 ttaatcggtg gtattggcgg ttctggactt ttagccatca aaaaagatct ttgtggaaac
      901 aagcctagct ttgcagcagg tggaactgtg ggctatgttt ctcgcacttc acaatgctac
      961 ctttgtaatg aagaagcttt agaagaagga ggaacacctg gaattttaca actcattcgc
     1021 gctagcttag cttttaaaat caaagattct atagggatta aaaatataga aaaaaaagaa
     1081 gaaattttaa aagattattt ttttgaaaaa ctaaaaacta tacctaattt aattttatat
     1141 gcaaagaatt taaaaacccg attgcctatt tttgctttca atatcaaagg aatttctcct
     1201 tttgatatcg cttacgaact tagtaaaaaa taccacatag aaacacgcgc tggatgtgct
     1261 tgcgctgggc cttatggtca tgatttgcta ggcttaaaag acaatcaaaa acttaaaaca
     1321 aaaccaggtt ggttaagaat aagcttgcat tatacacatg aaaaagagga tattgattat
     1381 ttttttaatg ctttaaataa aactatagta aaattatcgc attaaaatat tatagtttta
     1441 ttattatgta taaaaattct atcttcaaaa gccaaatcaa gtgcttttga aagaacatct
     1501 ttttctatat ttctacctgc ttgttgcata tcttgccaag taaattcatg gtttacaggt
     1561 aaaacagctt gagtgataat aggaccttca tcaagattat tatttacaaa atgtgccgta
     1621 gctccaatta ttttaacccc tctttcaaag gcttgtttat aaggatttgc tcctataaat
     1681 gcaggtaaga aagaatggtg aatatttata atcttacctt caaaatgcct aacaaaatca
     1741 ggagataaaa ttcgcatata ttttgccaaa accaaataat caaatttata ttgttcaaga
     1801 cattttaaaa tctgattttc ttgctctttt cgatctaaat tttcagcgct gataaaatga
     1861 taaggaattt caaatttctc aactaaatcc tttaaagagt tgtgatttga aatcacagct
     1921 ttgatatttg cttcaagttc gttactataa tgctttatta gcaaatctcc caaacaatga
     1981 ctttctttag tagcaaaaac aacaatatct ttttttctct tctcgcaaag ctctatcaag
     2041 gcttcttgtc caagcatagc ctcaagcgtt cctataaaag cttctttatc aaactcacct
     2101 tctaaaagag cacgaaaaaa aaacattcct tcgcctacaa attcatcgtt ttttactata
     2161 ttgatatgat atttaaaaat aacatcagaa attctataaa ttaaaccttt ttgatctttg
     2221 gtgcaaattt ttaatacaga aatcatttaa ctaaaccttt tatatattct tttaattcat
     2281 tctctcttgc ttcttgaagc tttagaccaa gaattttacc acaaaatcca gcatttatga
     2341 aatcttttgc taaaatttta ctttcaaact tattctcata aagccctaat cttttagctt
     2401 gctcaatacg ctttttactc caaagtccaa gccattcctt caatggcatt tcaaaagcaa
     2461 tttttgctag ttcaaaatca cttatatcat caagataaaa agcttgattt gcgtatttta
     2521 ggtattcttt tttaagttta gttcttttaa aaaatatatc tttttctaaa ttaaaaaaat
     2581 tcaaatacaa atacaagaat aaagcatcgc tttttacaaa ttctctactt tgtctgagta
     2641 aattttgaaa ttccaaactc ttaaaaacac tctcaaagcc gaaaacctgt ttctctaagc
     2701 caagttcttg taaatatcta tagccgacat caagtctagg acttttaaag aatttataaa
     2761 gctccgcatt gatcctatct ttactaagat cagttatatc catactttgc atcaatttca
     2821 agctttcact agttatctta aagttaaacc ttgaggcaaa tactactgct cttaataccc
     2881 ttaaactatc ctcttgaaag ctttgtttgt caatatgcct taaaaagcct gctcctagat
     2941 cttttaatcc tccgtaaaaa tctaaaaact catcgttaaa aagattaatc atcatagaat
     3001 ttatggtaaa atcgcgtctt ttggcgccaa gtttttcatc attgcaaatt tgaacttcaa
     3061 aacctttatg tccatagctt attttgtttt cggttctagc aagagctaaa tcataatttt
     3121 taaacttata cacaaaaaaa ctttttccaa agccttgtgc gcccaatttt tgcataatct
     3181 tttcaaaatc tttaagtttt atatcataaa gctctatatc atagtcacaa atttttaaac
     3241 ctaaaaacaa atccctaaca ctacctccaa ccaaatacgc tcgtttggta taaggcttta
     3301 aaaactcagc aataaactgt aaatcggaat tattttttaa gcttatcttc gatatttgca
     3361 agtaaaaact ctaaaaaatt tatggtcaag tttaacctat tttcaagatc atcttttttt
     3421 atactattta aaccttcaaa aagaactaaa attctctctc taagatgttt taaaaaaata
     3481 tcctcattaa gcgtttgaac ctctgttata acactaggat ttaaaatttc actttgtaaa
     3541 aaaggctctt cttttttaaa ctctttattt tcctgagtag aaatttcaat attattttgt
     3601 attttttgct cttcttcaaa ttttgccata gaaattttat cttctaagtc ttgcggagta
     3661 tcgagctctt cgcatacaaa ctccataggc ggtaattcat cttttatttc agtttttcta
     3721 tttaattctt gttcttttaa aatttcattt tgtcttcttt gctcttccat gatagagcta
     3781 acttcgctaa tggttttttt agctaaatct tccaaattca tatttttatc aaccaccttt
     3841 taaattcatt aatttcttca tcgcttttca tattaataaa aaaatccaac atttgagtgt
     3901 ttaaatcttt atgcttggat ctaaaaccac taagacgacg aaccgcatcg atagcgtttt
     3961 ggttatctgg atcttctttt aagatatttt tataaatttc taaagcttcg tcttttaacc
     4021 cttgagcctc
//
LOCUS       DAEBKH010000132         3993 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.132, whole genome shotgun sequence.
ACCESSION   DAEBKH010000132 DAEBKH010000000
VERSION     DAEBKH010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3993
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.132"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..97
                     /locus_tag="KIL20_001482"
     CDS             <1..97
                     /locus_tag="KIL20_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721497.1"
                     /translation="IFPDTDLSKKLGISRKSLWEKRKKYEISKKK"
     gene            75..1235
                     /locus_tag="KIL20_001483"
     CDS             75..1235
                     /locus_tag="KIL20_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HBD2721498.1"
                     /translation="MKSARKNKNITIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLILDEKVVGHIDFKSRFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIKKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDANGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFMRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            1240..1740
                     /locus_tag="KIL20_001484"
     CDS             1240..1740
                     /locus_tag="KIL20_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HBD2721499.1"
                     /translation="MQKLFLTFFYSGSIKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
     gene            1819..2082
                     /gene="rpsT"
                     /locus_tag="KIL20_001485"
     CDS             1819..2082
                     /gene="rpsT"
                     /locus_tag="KIL20_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HBD2721500.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            2101..3168
                     /gene="prfA"
                     /locus_tag="KIL20_001486"
     CDS             2101..3168
                     /gene="prfA"
                     /locus_tag="KIL20_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HBD2721501.1"
                     /translation="MLASKLDPFLKRFEELNSLLSSSDILNDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGTGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(3182..3937)
                     /locus_tag="KIL20_001487"
     CDS             complement(3182..3937)
                     /locus_tag="KIL20_001487"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HBD2721502.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDTIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNANAEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAAS
                     VILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMFDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVAHVGASGNPHKFPHKH"
BASE COUNT         1453 a          608 c          616 g         1316 t
ORIGIN      
        1 tatatttcct gatactgatc tttcaaaaaa attaggcatt tcacgtaaat ctttatggga
       61 aaaaaggaag aaatatgaaa tcagcaagaa aaaataaaaa cattaccata gatcaaaatg
      121 aatttggcat cttgtcactt attaaagaag gtttgctagg tacttgcact catttaatga
      181 atgaaaaaga agtcaatgaa atcattaaat caggaaaatt taaaggagaa agttttccct
      241 atcccttaag ctttgcacca aaaaatgctg aagaagcact aaatgatata aaatctggcg
      301 atagaatcga tctcatacta gacgaaaaag tagtaggaca tatagatttt aaaagccgat
      361 ttaaaaataa taaaaatttt tctgatattt tcagtcctaa cacttgctct ttggaagata
      421 tgggaacaac ttgtataagt ggaaaaatag aaatttacaa ttctcaaatt aaaaaaataa
      481 aagaaaattt tcaacaaatc aaaaacaatc ttaatgcaca aaaaattacc gctatagttt
      541 caagttttga tcctttgcat cgtgcccatg aaagaatgtt tcgttggact attgataaag
      601 cagatttagt tgtaattttt cttgtagaat cttttgatgc aaatgggttt gaattcgaac
      661 ttaaagaagc ttatttgaaa aaatttattc aaaactatct tccaccggat agaattttca
      721 tttttccatt aaaaaatatt aatatttttc acgctcattt aaatcctggc ttagaaagca
      781 ttatcgcaaa aagtctaggt tgtaccaaac tagtagtagg acaaaatcat acaggacttg
      841 gaatgtttta tgatgataat caaccaaaaa ccatacttga tgatttttcc aaggattatg
      901 gcatagaagt gattgttttg cctgaatttg tattttgcga tcaatgtcgc atgattgtta
      961 gcacaagatc ttgccctcat ggttgtcatc accatttgca ctataattct cagtctttaa
     1021 aagatttact aagagcgggt atcattcctc cagcaatttt catgcgcaag gaagtatcta
     1081 gcgttatttt aacttctctt tttccaaata gattaaaaaa tatgcaaaaa atttataatg
     1141 agctttttcc aactgatgga attttagaat acaaaaatga tgaagaattt tatcaaaaac
     1201 ttttagaaat tcatcaaatg tcttatatgg tgtaacaaaa tgcaaaaatt atttttaact
     1261 tttttttatt caggttctat aaaaaaggca agtgggactt ttggtactat cgctgcttta
     1321 atacctgctt tttttatact taaatatctt gggattaata ctttgttttt actaagtatt
     1381 ttaatttttg ttgcaagtat tcgtgttata gatgattatg aaaaaaaaac aggaattcac
     1441 gatgacaaac acatagttat cgatgaagtt gctggggttt ttcttgcttg tgctattgca
     1501 gcaagtgttg aaaattcaat agttaatttt attttggctt ttgttttatt tagactcttt
     1561 gacattacaa aaccttctat tattggcaaa atagataaaa aagtcaaagg cggactaggt
     1621 gtaatgcttg atgatatgct agcaggattg tttgctggac ttttaagtgc ggtaatttat
     1681 ggatttttac ttaaatttaa tttagttttt tgggatataa atttaaaaga tttattttga
     1741 aattttgctt aaattaatta aattttaaat tttattctta tataatttag tctttaattt
     1801 caaaaaagga aaatataaat ggcaaaccat aaatctgctg aaaaaagagc aagacaaact
     1861 attaaaaaaa cagaaagaaa tagattctat agaacaagac ttaaaaatat aactaaagcc
     1921 gtaagagaag ctgcagcaaa tggagataaa aatgctgcta atgaagcttt aaaagtagct
     1981 aataaaagca ttcatgctat ggtaagtcgc ggtttcatta aaaaacaaac tgcttctcgc
     2041 cgtgtaagcc gcttagccct tttagtaaat aaaatcgcat aattttctat atagttttta
     2101 atgttagcta gcaaactaga tcctttttta aaacgctttg aagagttaaa ttctcttctt
     2161 agcagttctg atatactcaa cgatatcagt aaaatgacta cactctctaa agaacaaaaa
     2221 aatttagaac ctatcgtttt aaaagctaaa gagtatttaa aaactttaga caatatagaa
     2281 gaaaataaag ctttgctaaa cgatccagaa cttggggaac ttgcaaaaga agaactaaaa
     2341 actttagaag aattaaaacc aaaacttgaa gaagagatta aaattttact tcttcctaaa
     2401 gatcccaatg atgaaagaaa tatttttctt gaaattcgtg caggtacagg tggcgatgag
     2461 gcatctttat ttgtaggaga tcttgtaaaa gcttatgcaa gatatgctga aaatcgcggc
     2521 tataaacttg agattgtaag ctctagcgaa ggaagtgtag gtggatttaa agaaatcatc
     2581 atgcttgtta aaggaacagg ggcttattca agacttaaat atgaaggtgg aacgcaccgt
     2641 gttcaaagag ttcctcaaac agaatcccaa ggacgcgtgc atacttctgc tatcaccgtg
     2701 gcagtaatgc cagaagttga tgatatagaa atcgaaatca atccaaacga tcttaaagtt
     2761 gatgtgatgc gttcttctgg acatggtgga caaagtgtaa atactactga ttcagctgtt
     2821 cgtatcactc atatccctac aggtatagtt gtagtcaatc aagatggaaa aagccaacac
     2881 aaaaataaag aaagtgcgat gaaagtccta aaagcaaggc tttatgaaat gcaagagagt
     2941 gaaagactag caaaagaaag cgaagcaaga aaatcacaag taggaagcgg agatagaagc
     3001 gaacgcattc gcacttacaa ttttccacaa aatcgtatca gcgatcatag aataaatctt
     3061 actttatatc gcttagatgc cattatgcaa gatgggcttt ttgatgaaat catagaacct
     3121 ttaatcactc atcatcaagc ccaagcttta caagaacaaa atttataaga ttttatacaa
     3181 attaatgctt atgtgggaat ttatgtggat ttccactagc acctacatgt gcaacatttc
     3241 cattttctat atcataagct tgaccaaaac cttttacaaa gcgtcctttt ttaaattcaa
     3301 gctttactag atgaaaatca aacatcttgc gtatagtttt aatgcctcct tctcctccgg
     3361 tttgtttttc aaactcatca taaatttgat caaatctttc acctctctct aaaaagcttg
     3421 catttactct atagcgcaat cttttgcgaa gtataacaga agcagcttta ctctcatcct
     3481 ctaaaaacat tatttctata ttgtttggat ttactttgat gttgttaaaa tgttcactta
     3541 cttcacttat ataaatataa tttccccatt gtgtgcttac aaaaggtgca tacgagcaaa
     3601 caacttctgc atttgcattt aaagttgcca aagctacaga attaaaactt agcataaatt
     3661 catttaattc tttttctacg ccactaaaat tttgctcgct ctttgcactc atgcaaaggg
     3721 atattatagt atctttaatc gtgttttcat cggctttttt aggaaattcc actcgtaaat
     3781 tttctttatc attgtaaaca agatccaagc cattaaaatc aacacttttt agaaaaacat
     3841 cttgcacttg ctcaatacca ccaaattttt tacaaagatc aactaaattt gatttatgat
     3901 gatcattcat atgagaaata atgctttcaa aattcatttt tatcctttct tgattttaaa
     3961 ataaaatatt aaaaaaaatg gtatcaatta tca
//
LOCUS       DAEBKH010000133         3739 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.134, whole genome shotgun sequence.
ACCESSION   DAEBKH010000133 DAEBKH010000000
VERSION     DAEBKH010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3739)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3739)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3739
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.134"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..163
                     /locus_tag="KIL20_001488"
     CDS             <1..163
                     /locus_tag="KIL20_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HBD2721503.1"
                     /translation="HKRNYKLLKTIQEPVILVDDIVTTGSSLLEAKKVLEENKISVLF
                     ALVLADAKV"
     gene            204..2795
                     /gene="gyrA"
                     /locus_tag="KIL20_001489"
     CDS             204..2795
                     /gene="gyrA"
                     /locus_tag="KIL20_001489"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HBD2721504.1"
                     /translation="MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFASGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDLQ"
     gene            2859..3374
                     /gene="flgP"
                     /locus_tag="KIL20_001490"
     CDS             2859..3374
                     /gene="flgP"
                     /locus_tag="KIL20_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HBD2721505.1"
                     /translation="MKKIYFMLAIAGIFAGCVPSANSATKNSSANSTPPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDENFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            3350..>3739
                     /gene="flgQ"
                     /locus_tag="KIL20_001491"
     CDS             3350..>3739
                     /gene="flgQ"
                     /locus_tag="KIL20_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HBD2721506.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDIKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GAKISVKDIVNTDLLRAQSETYIKILPL"
BASE COUNT         1361 a          460 c          758 g         1160 t
ORIGIN      
        1 acataaaaga aattataaac tcttaaaaac cattcaagaa cctgtaattt tggtagatga
       61 tattgtaacg actggttcta gccttttgga agctaaaaaa gttttagaag aaaataaaat
      121 ttctgtactt tttgctcttg ttttagctga tgcaaaagtt taatatgcta taatcaaaac
      181 tttgaactaa tagaaggatt tttatggaga atatttttag caaagattct gatattgaac
      241 ttgtagatat agaaaattct ataaaaagta gttatttaga ctattctatg agtgttatta
      301 taggtcgtgc tttgcctgac gcaagagatg gtttaaagcc tgttcataga agaattttat
      361 atgctatgca aaatgatgag gcaaaaagta gaacagattt tgtcaaatca gcccgtatag
      421 tgggtgctgt tataggccgt tatcacccac atggagatac agcagtttat gatgctttgg
      481 ttagaatggc tcaagatttt tctatgagat atccaagtat tacaggacaa ggcaactttg
      541 gatctataga tggtgatagc gccgctgcga tgcgttatac tgaagcaaaa atgagtaaac
      601 tttctcatga gcttttaaaa gatatagata aagatacggt cgattttgtt ccaaattatg
      661 atggttcaga aagtgaacct gatgttttac cttctagggt tccaaattta ttattaaatg
      721 gttcaagtgg tatagctgta ggtatggcga caaacatccc acctcatagt ttaaatgagt
      781 tgatagatgg acttttatat ttgcttgata ataaagatgc aagcttggaa gagattatgc
      841 agtttattaa aggtccagat tttccaacag gtggaataat ttatggtaaa aaaggcatta
      901 tagaagctta tcgcacaggg cgtggtcgtg tgaaagtgcg agctaaaact catattgaaa
      961 aaaagacaaa taaagatgtt attgttatag atgagcttcc ttatcaaacc aataaagcta
     1021 ggcttataga gcagattgca gagcttgtta aagaaaagca aattgaagga atatctgaag
     1081 taagagatga gagtaataaa gaaggaatcc gcgttgttat agagcttaaa cgtgaggcta
     1141 tgagtgaaat tgttttaaat aatctattta aatctaccac tatggaaagt acttttggtg
     1201 tgattatgtt ggcaattcac aataaagaac ctaaaatttt ctctttgtta gaacttttaa
     1261 atcttttctt aacccataga aaaacagtta ttattagaag aacgattttt gaacttcaaa
     1321 aggcaagagc aagagctcat attttagaag gtcttaaaat tgcacttgat aatatagatg
     1381 aagtgattgc tttaattaaa aacagttctg ataataatac cgcaagagat tctttggtag
     1441 ctaaatttgg tcttagtgag cttcaagcca atgctatttt agatatgaaa ctaggtcgtt
     1501 taacaggact tgaaagagaa aaaatcgaaa atgaacttgc agaattaatg aaagaaattg
     1561 caagacttga agaaatttta aaaagtgaaa ccttgcttga aaatttaatt cgcgatgaat
     1621 taaaagaaat tagaagtaaa tttgatgtgc cacgtattac tcaaattgaa gatgattatg
     1681 atgatattga tattgaagat ttgattccta atgaaaatat ggttgtaact attacccatc
     1741 gtggttatat taagcgtgtg cctagtaaac aatatgaaaa gcaaaaacga ggcggaaaag
     1801 gaaaattagc cgttacgact tatgatgatg attttataga aagtttcttt acggcaaata
     1861 cacatgatac gcttatgttt gtaacagatc gtggacagct ttattggctt aaagtttata
     1921 aaattcctga aggctcaaga acggctaaag gaaaagcagt ggtaaatctt attaatttac
     1981 aagctgaaga aaaaatcatg gctattattc caaccacgga ttttgatgag agtaaatctt
     2041 tatgtttctt tactaaaaat ggtattgtaa agcgtacaaa tttgagtgaa tatcaaaata
     2101 tcagaagtgt aggagttaga gcgatcaact tggatgaaaa tgatgagttg gtaactgcta
     2161 ttattgttca aagagatgaa gatgaaattt ttgccagtgg tggtgaagaa aatttagaaa
     2221 atcaagaaat tgaaaattta gatgatgaaa atcttgaaaa tgaagaaagt gtaagcacac
     2281 aaggtaaaat gctctttgca gtaaccaaaa aaggtatgtg tatcaaattc ccacttgcta
     2341 aagtacgtga aatcggtcgt gtaagtcgtg gggtgacggc tattaagttt aaagagaaaa
     2401 atgacgaatt agtaggtgca gttgttatag aaaatgatga gcaagaaatt ttaagcataa
     2461 gtgcaaaagg tataggaaaa cgcaccaatg ctggagaata tagattgcaa agcagaggtg
     2521 gtaagggtgt aatttgtatg aaacttacag aaaaaaccaa agatcttatt agcgtagtta
     2581 tagtagatga aactatggat ttgatggctc ttacaagttc aggcaagatg atacgtgttg
     2641 atatgcaaag cattagaaaa gcagggcgta atacaagtgg cgtcattgta gttaatgtgg
     2701 aaaatgacga ggtggttagc atcgctaagt gtcctaaaga ggaaaatgac gaggatgagt
     2761 taagcgatga aaactttggt ttagatttgc aataagttta aagttggaac gcttattgct
     2821 ttttatttta ctaattacaa tattttgaag gtgtaaaaat gaaaaaaatt tattttatgc
     2881 tagcaatagc aggaattttc gctggttgtg taccaagtgc aaacagtgca actaaaaatt
     2941 caagtgcaaa tagcactcct ccatctcaag atgttatcgt gcaaaaagtc gataaagatg
     3001 atgtgcgtga tattatcaga gaagaaaaga tgttggctcc agatgctagc gaaacggaac
     3061 ttagttttac agcagttggt gaaggaattg ctccaatgaa tacagtatct actgctcaag
     3121 ccctagcttt agcaaaaaga gcagcgatta cagatgctta cagacaactt gcaagtaagc
     3181 tttatggtgt gaaagtaaat ggtaaagata ctgtaaaaga tgcaatgctt agaagttcaa
     3241 ctattactgc gcaagtaaat ggtttgataa aaaatgcaag tattattgat gagaatttta
     3301 atcaagggct ttatagagta aacttagaac ttaaaatcga tgcagacaag tggaaagaat
     3361 tgtttgctta ttaatctttc ttagctttaa gctttttgcc caagatgaat ttattttttg
     3421 ggcagagctt tctagtaaaa atttcattct ctttcatcaa aatcaaaatt tatccttagc
     3481 aatgacgcaa agtgaaaatg ttgaagaaca atgggtatgt gaaatttctt atagtgatca
     3541 agatataaaa gttttacctc gaacttcttt aggattaatt gatgataata tgccaaaaac
     3601 aattaaattt aattttttaa attctcataa agatgagtta agcgattgct ttataggagc
     3661 taaaatcagt gttaaggata ttgttaatac tgacttatta cgtgctcaaa gtgaaactta
     3721 tattaaaatt ttacccttg
//
LOCUS       DAEBKH010000134         3708 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.135, whole genome shotgun sequence.
ACCESSION   DAEBKH010000134 DAEBKH010000000
VERSION     DAEBKH010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3708
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.135"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..1480)
                     /locus_tag="KIL20_001492"
     CDS             complement(<1..1480)
                     /locus_tag="KIL20_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HBD2721507.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDSSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDVPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDR"
     gene            complement(1497..2144)
                     /locus_tag="KIL20_001493"
     CDS             complement(1497..2144)
                     /locus_tag="KIL20_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HBD2721508.1"
                     /translation="MKKGIFLLVFLSVFFNACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETTLIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
     gene            2305..2694
                     /gene="fliW"
                     /locus_tag="KIL20_001494"
     CDS             2305..2694
                     /gene="fliW"
                     /locus_tag="KIL20_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HBD2721509.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
     gene            2694..3425
                     /locus_tag="KIL20_001495"
     CDS             2694..3425
                     /locus_tag="KIL20_001495"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HBD2721510.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            3422..>3708
                     /locus_tag="KIL20_001496"
     CDS             3422..>3708
                     /locus_tag="KIL20_001496"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721511.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSV"
BASE COUNT         1265 a          614 c          469 g         1360 t
ORIGIN      
        1 ttctatctct taaaggtgca ggaatattgc taatatcatt tgccgttgct ataaaaatga
       61 ctttacttaa atcaatatta aaatttaaat aataatccct aaatttagaa ttttgctctg
      121 gatctaaaat ttctaaaagc accgcacttg gatcgcctct aaaactgcga tttaatttat
      181 caatttcatc caatacaatt acaggattaa tttgttttgc ctctatgagt ccttgagtaa
      241 tacgtccagg catagcgcct atgtaagttc tacgatgacc acgcagctca ttaacatctt
      301 caagtccacc taaggctata cgaataagct ctctttttaa agcttttgaa acagaatttg
      361 ccagtgaagt tttacccacg ccaggaggcc cataaagaca aagtataact ttagcaccat
      421 ctttttctgc tatttttctt ttttctaaaa gctccctaac tgcaaaatat tcttctatgc
      481 gttcttttgg tttatttaat gcataatgat catggttgag ctgttttgaa acttccttaa
      541 tatcaagttt tttcttagaa attttttcaa aaggaacatc taatgctgtt tctatgtaag
      601 tttgaatcat cgatgcttcg gaattatctt gatgaatgcg ttcgaatttt tcaatttgtt
      661 ttttgatttc tttataagcg tcttcgtgca taaatttctt ctttaactcc agacgctttt
      721 gatactctct aacctcatct tctttttgcg tatcagaacc aagctctttt tgaatttgtc
      781 ttaattgttc ttttaaaaaa tattctttat ttaccttatc aatacgagaa tgtactttat
      841 ttttaatttc tttttgaatt ttattagctt ctatttcttg agcaattaaa tctattaatt
      901 ttactaattt ttgctcaaga tctgttaaaa caaaaaactc ataagcaact tgttttttaa
      961 tacgcacagt atttaaaatc aaatcgcaaa tcctagatgc atcaaaacct tcttcaattg
     1021 ttcttaaaag atctggagaa aaataatgac taatatttgc caaatttttt actttctctt
     1081 ttaaaacttc aagaagtgct tcttttttag ttccttctaa aaagtcttct tttataagtt
     1141 ctatcttggc ttctaaaggt ttattagaaa tttgctctat aattttaccc ttggcatatc
     1201 cttgaaaaag tattttcact cttccatcag gcaaaggaac ttttcgcatg atagtcccaa
     1261 tcactccgca attataaatt tcatcaaaat ttcttccatt ttccaacttt gaaggtgcaa
     1321 caaaaagcat gctatcattt ttaatcgcaa gatctaaagc tttcatattg gatgaatcgt
     1381 taataaaaat aggagttatc ataaaaggat ataaaaataa ttcatcttca accaatactg
     1441 gtaaatttgc tggataattt tgtatctctt caatctgcat ttattttcct tgtttattaa
     1501 aatctttcaa atatacttct ataccaagga agctcaggtt tgataatact ttgctgataa
     1561 aattcacttt cttgaagtct ttgtttataa atttgtgcac tttcatcatg ccctatgcgc
     1621 tggtatagat tttctatagt actattaaga taaaaaaccg ctaaattaaa ttttgtaagc
     1681 attgtttgaa ccaaaggttc atattctgta taaggataat ctttcaaaaa agtatctatt
     1741 tccttttggc tttcaagcat taaagcctga ttacgatttg gcactgcaaa tgcatcaaat
     1801 tttgctttaa ttttaagata acgaatataa tcagcattgc gcgaatttcc aaatttttta
     1861 ttatattcat ctaaataaaa ttcagctaac ttatattcct cttcatccat atgagcttgt
     1921 gctaaaataa ttaaagtagt ttccaataaa ggatcggcaa cgtgctcact tgccatacca
     1981 ttataatgat catcagcttt ttccaaatcc ttgtcctgta aatctttaat aatttgttta
     2041 taccactcac tagcactaag attgtataaa ccttcatcat ttttcgtact acacgcatta
     2101 aaaaaaacac ttaaaaaaac caataaaaaa ataccttttt tcatacttca ccttgattta
     2161 tattctcaaa aatatatatt ttaacgattt tataattatg ttcttctaaa attataataa
     2221 aattaattaa ataatttaaa attttggaat gattattgct tattttatgt taaaatatta
     2281 aacattataa cttgaggaga aaacatgacc ctagctgtta aatgccctat cttaggtttt
     2341 gaagaaacca aaaatatgga attttcaact atcgatgaag tatttgtaag acttaaaagt
     2401 cttgatggta aagacttttc ttttgtttta attaatcctt atttgattag acctgattat
     2461 gaatttgata taccaactta ttatcaagag cttctttctt taacacctga atctaatatg
     2521 aaaattttta atatagtagc catagcaaaa agcattgaag aatcgacagt gaattttcta
     2581 gctccagtag tcattaatct tgataataat actatggtac aagtgatact agatacagtt
     2641 aattatcccg acttttttca agctgatcaa attgctaatt atattaaaaa ataatgctct
     2701 atatacttgc aaatggatct atggcaacag ccttagccta tgggttaaaa gatgattatg
     2761 aaatttgtat agtaggaaga agtatagaaa aacttcaagc cctcgccaaa gaaggcttta
     2821 aaaccttact ttacaaagat tttaacatag aaggtaaaga tgttatttta gcatttaaac
     2881 cttatgcttt agaaaatatt gctcaaatgc taaaaggaca agcacgtatc ttaatctctg
     2941 ttttagccaa tgttgatttt gaaaaactac aaaccatcaa agctcaaaat tatgttagaa
     3001 taatacccaa tacagcagct aaatacaagg cttcaaccac accatatata cttaaaaact
     3061 ctcattttga aaatgaaatt ttagacattt taaaaacttt tggctcggct tataaattag
     3121 ataatgaaat acaaatgaat gcagctatgg cgattagcgg ctgcgctcct gcttttttag
     3181 cacttatagc agaaagcatt gctaatgctg gagtttatga aggtttgtca aaagaactta
     3241 gtctcaatct tacgcgctct ttatttaaaa gctctagtgc tttactagaa catgagcatc
     3301 cagctattat caaagaaaat atttgctccc ctggaggagt tacaataaaa ggcataaaaa
     3361 tactcgaaca aaaaggaatt cgcggaagtt tttttgaagc cataaatgct agcagcgcta
     3421 aatgaaaaag gctttcatac ttatagaaag cattagtgct ataacgatca tatctttaat
     3481 tttcattggc attttttatt actatattca actttacaaa aactatgaaa atttaaatat
     3541 ttttgaaaga ctctataaac ttcaagaaga attatatgaa aagcctattt ttaaaaccat
     3601 catacttcaa acttcagcct taaaacctat agttttacaa gaacagtttg ttaatgatgg
     3661 tatatttcaa tttcaaaaat tatactttca agatcaaaat tatagcgt
//
LOCUS       DAEBKH010000135         3688 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.136, whole genome shotgun sequence.
ACCESSION   DAEBKH010000135 DAEBKH010000000
VERSION     DAEBKH010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3688)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3688)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3688
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.136"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..360)
                     /locus_tag="KIL20_001497"
     CDS             complement(<1..360)
                     /locus_tag="KIL20_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721512.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRTVFSLFFLIPIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRISMGDFYLYIFSFFLAIFGLISLFLNFLNLEKID
                     FVFIFIILPLLMIFLKKE"
     gene            complement(341..2284)
                     /gene="ligA"
                     /locus_tag="KIL20_001498"
     CDS             complement(341..2284)
                     /gene="ligA"
                     /locus_tag="KIL20_001498"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HBD2721513.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESEFRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGLGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCVNLDEVLKAYDELLALREKKPMMMDGMVV
                     RIDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKDRREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWHKQSFEAYANLEGFGEQMALSLCEFTRVNRTRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRSRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LIKAKELEIKCIDESAFNELVKE"
     gene            complement(2285..3427)
                     /gene="folP"
                     /locus_tag="KIL20_001499"
     CDS             complement(2285..3427)
                     /gene="folP"
                     /locus_tag="KIL20_001499"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HBD2721514.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRVGAELITHKEVITAKITHSNVLLMASKEQIQKLIVKEKLQDFGLK
                     NLALFLQKDFLKPKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPEYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYEAKYCLMHMQNNPNNMQDNPFYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASVIRVHDLYEHKQLFALAQAMDNIGV"
     gene            complement(3429..>3688)
                     /locus_tag="KIL20_001500"
     CDS             complement(3429..>3688)
                     /locus_tag="KIL20_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HBD2721515.1"
                     /translation="EVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECV
                     KYKDFNAEELEFFYESYELAKLNSKSGVLLATLLLNYYTKK"
BASE COUNT         1240 a          729 c          411 g         1308 t
ORIGIN      
        1 ttcttttttt aaaaatatca tcaataaagg caaaattata aatataaaaa caaaatcaat
       61 tttttcaaga tttaaaaaat ttaaaaataa agaaataagt ccaaaaatcg ccaagaaaaa
      121 actaaaaata taaagataaa aatcccccat actaatacga taaaacaaac ttcccttaat
      181 caaagtagct tcttttataa tattttttct aagctttaaa aataaaaaga attcccaaaa
      241 aagtgttaaa aaaataggaa ttaaaaaaaa taaagaaaaa acagtccttt gccaagttag
      301 taaaaagcca aaaaggctta aaagcgttaa aatataagaa ctattcttta acaagctcat
      361 taaaagcact ttcatctata cattttattt caagctcttt agccttaatc agcttagaac
      421 ctgcctcttc tccaaaaagc acatagtcag tctttttaga aactgagcca cttaccttac
      481 ccccaagctt ttctatcaaa gccttaaact catctcttga gcgtgaaaga gtacctgtaa
      541 ttacaaaagt tttaccaaaa atcacaccat cgcttttgat ttcaagtttt tctattttca
      601 aatttaaaag cttgtaaaac tcatcaattc ttgtacgatt aacacgcgta aattcgcaaa
      661 gacttaaagc catttgctct ccaaaacctt ctaaattggc ataagcttca aagctttgct
      721 tgtgccactc tttaccaaaa cttaaactta attttttagc cgcaacctcg ccaatatgct
      781 ctatccctaa agctgtgata aaacgaaaaa gctcacattc tcttgcttgt tctatagcat
      841 ttaaaagatt gttaattttc ttttccttaa agccttccaa accttcaaaa tcactaaatt
      901 ttaaatgaaa aatgctctca agcgtagtga tttttttgtg tttgtataaa agctctacta
      961 tattttctcc aagcccgtcg atattaagac attttttaga aacaaaatga atgatagaat
     1021 ttacaagtct atcctcacaa tctatatttt gacattttat taaagttcct tcatctaaaa
     1081 gctcactttg gcaagtagga caaagcttag ggcgtgaaat ttccatctct aaaccttctc
     1141 tacgatcttt aaaaacctta gtgattttag ggataacatc gccacttctt atcacgctta
     1201 caaaatcatt gattttaaca tcaagtcttg caatctcatc aaaattatgg agtgtggctg
     1261 attttactac aaccccatct aaatttacag gttctaaaac cgccacagga gtgatcactc
     1321 cacttcttcc cacttgtaaa tttacgccta ttaaacgcgt ggttttttca agtgcaggaa
     1381 atttaaaagc tgccataaat tttggaaatt ttaccgtata gcctaattct tcacaaagtg
     1441 caagatcatc aattcttacc accataccat ccatcatcat aggctttttt tctcttaaag
     1501 ctaaaagctc atcataagct tttaaaacct cgtctaaatt aacacaaagt cttacaaaat
     1561 catcttttaa aaaaccgagc tctctgataa attgcatcac ctcactgtgt ttagtaaaat
     1621 ttaaggtatt ttcccctagt ccccaaggat aaaatttcaa attcctttct ttggtgatgc
     1681 ttgtatcaag ctgccttaaa ctcccacttg cagcattgcg tggattggca aataaacttt
     1741 gatttaaaag ggctcttttt tcgttgattt tctcaaaatc atcttttaaa atcaccactt
     1801 ctccacgaat ttctatcctt tctttatagg ctatattttt aggtatattt tctatctcaa
     1861 aaacattaag cgttatatcc tcacccactt cgccatcgcc cctagtggca ccgcttacta
     1921 atttaccatt ttcataaagc aaatttaaac tcgctccatc aaatttaggc tctataaaaa
     1981 agtttttttc acattttgcg cgttttgccc aagccctaaa ctcactctca tcaaacacat
     2041 cttccatcga ccacatacgc tttaaatgag ctattttttt aaactcgctt tgtatagtag
     2101 gagctatttt ttgcgttgga gagtcttttg aaatttcatc tttattttgt tcttcaaaag
     2161 ctcttaattc tctgattaaa gcatcgtatt cttcatcgct agccaagggt tcatcttttt
     2221 cataatatgc cctcatccac aaatttgcta aagcaacttt ttctaaatac tcttcttttt
     2281 tcatctaaac tcctatatta tccattgcct gtgctaaagc aaaaagttgt ttgtgctcat
     2341 ataaatcatg cactcttata acactagcac cattttcaaa agcctttaaa tgcaaataca
     2401 aagttcctgc taaacgatct ttaatctcgc tttgaaaata cgcattaatc acacttttgc
     2461 gactcgcacc tataagcaaa ggcttattaa attgtaaaaa atgttctaag tgtttgatta
     2521 aaatcatatt atggcccgca ctctttccaa aaccaatacc tacatctaaa atactttctt
     2581 ttactccaaa actttctaaa agctcaagtt tttctttaaa aaacaaagtc atctcatcaa
     2641 gcaaatcttc ataaaaagga ttatcttgca tgttatttgg attgttttgc atgtgcatta
     2701 agcaatattt tgcctcatac ttacttgcaa gtttggctag attaagattt cttaaacttg
     2761 taatatcatt aatgagttta aaacccttat ttaaagcata ttctagacaa tattcatcaa
     2821 aactatctaa actaaaaatt gcttgttcgt aataattttt ctcataaatt aagtcaagta
     2881 cttttttcag tcttttaaat tcctcttcct taccacaata ctcactccca ggtcttgaac
     2941 taaccgcacc tatatcgata tattcaggct ttaaagcaag aaagtcatta agtctttttt
     3001 caaagtcttc ttcactcaca cgactttttg cattaaaact gtcttcatta acattaatca
     3061 ctgccataag ctcggctttt ttcggtttta aaaaatcttt ttgcaaaaaa agagccaaat
     3121 ttttaagtcc aaaatcttga agtttttctt tgacaataag cttttgaatt tgctctttac
     3181 ttgccattaa aagcacattt gaatgagtga tttttgcagt aattacttct ttatgagtaa
     3241 taagttcagc tcctactctt aaagcatctt gttttaaaat atttgccgca ggagtagaaa
     3301 tatctttgat aaaaataaaa tgaatttttg ttttttcact cataatcttt tgtcccattt
     3361 tatgagggtt tatgaaagaa caaagcaaat taaaatcggt gtttggattg attttaaaaa
     3421 atttcatttt atttctttgt atagtaattt agcaaaagag tagctaaaag caccccgctt
     3481 ttagaattta attttgcaag ctcataactt tcataaaaaa actctaattc ttcagcatta
     3541 aaatctttat atttcacaca ttctttagca agcaatgcga tttgatccat aagttcattt
     3601 ttatccaaat tttcattttt ttgcaaaaaa tcaaaaagca ttcttaaatc cattctttta
     3661 agatctaaat caagtttttt aacttcct
//
LOCUS       DAEBKH010000136         3677 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.137, whole genome shotgun sequence.
ACCESSION   DAEBKH010000136 DAEBKH010000000
VERSION     DAEBKH010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3677
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.137"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            11..784
                     /locus_tag="KIL20_001501"
     CDS             11..784
                     /locus_tag="KIL20_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HBD2721516.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
     gene            complement(869..1753)
                     /locus_tag="KIL20_001502"
     CDS             complement(869..1753)
                     /locus_tag="KIL20_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HBD2721517.1"
                     /translation="MIRIDINHPINTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNVKENIA
                     YATSSKAKVSELLALMGLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELAKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSSISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDIKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(1750..2424)
                     /gene="modB"
                     /locus_tag="KIL20_001503"
     CDS             complement(1750..2424)
                     /gene="modB"
                     /locus_tag="KIL20_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HBD2721518.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKGKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYNLAHQYAFILFIFSFLVLFSLYFVN
                     KKMSFQ"
     gene            complement(2417..2818)
                     /locus_tag="KIL20_001504"
     CDS             complement(2417..2818)
                     /locus_tag="KIL20_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HBD2721519.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSILMLELKYLENLKI
                     GASVELLFKEHELCFSTSKTLLSVENSFLAKITKIKKGELLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(2815..3564)
                     /gene="modA"
                     /locus_tag="KIL20_001505"
     CDS             complement(2815..3564)
                     /gene="modA"
                     /locus_tag="KIL20_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HBD2721520.1"
                     /translation="MKKFIVFFGILFFVSCLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGIENLKEKAGKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAIIIDTKYFSPLEQSYVITKY
                     AKDKKLAFEFSEFIGSSKAKEIFKKYGFSTP"
BASE COUNT         1369 a          561 c          490 g         1257 t
ORIGIN      
        1 aagatatttt atgaaaaaaa taactttatt tttacttttc ttaaatttag tgtttgggca
       61 agataagata ttaaataatt ggtttaaaga gtataataca agcggcactt ttgtttttta
      121 tgatggaaaa acttgggcga gtaacgactt ttcaagggct atggagactt tctctcccgc
      181 ttccactttt aaaattttta atgctctaat tgcacttgat agtggtgtga taaaaactaa
      241 aaaagaaatt ttttatcact atagaggtga aaaagtattt ttatcttctt gggcgcaaga
      301 tatgaattta agttcagcta taaaatattc taatgttctt gcttttaaag aagtggcaag
      361 aagaattggt atcaaaacta tgcaagaata tttaaacaag cttcattatg gtaatgctaa
      421 aatttccaag atcgatactt tttggcttga caactcacta aaaataagcg ctaaagaaca
      481 agcaattttg ctttttagac tttcacaaaa tagcttacct ttttctcaag aagcaatgaa
      541 tagtgttaag gaaatgattt atttaaaaaa tatggaaaat ttagagcttt ttggaaaaac
      601 aggttttaat gatgagcaaa aaattgcttg gattgtaggt tttgtgtatt taaaagatga
      661 aaataaatat aaggctttcg cgctaaattt agatattgat aaatttgaag atttatataa
      721 aagagaaaaa attttagaaa aatatttaga tgaacttgta aaaaaagtta aaaatgatgg
      781 ctagtgagta tttcgtaaaa tgcaaaaata cttaattgta tgatttgcgt acacttaaag
      841 tactcattaa aaaattaaat ttttgctctt atttatcaag ttttcctacg atgatagggt
      901 taaaggcttt tatggatagc aaaagcgtat cgccgatttt tatatcttga taagctttta
      961 gaaattcctc ttcactaaga gtgattttaa taatatcttg atttaaaagc aaggttaaaa
     1021 ccactaaaat atcacttttt ttaatttcta gcaaagttgc actcaaacgc aattttgcac
     1081 taatacttga atgagtaaaa aattcatttt taggaaaatc cttaatgatt tttccatttt
     1141 taagctctaa aattctatga cttaacttat aaatttcagc caaatcatga ctgactaata
     1201 aagtacttat cttaaaatac tctaaaattt tagccaattc atcttgtaaa ttggcgcgca
     1261 ttttaaaatc caaagcgctt aaaggctcat ctaaaagcaa aatttttggt tcccttgcta
     1321 aagctcttgc tagggctacc ctttgtgctt gtcctccgct taaatgttta ggataaattt
     1381 tagccaaatt ttcaagtccc attaaggcta aaagctcgct aacctttgcc ttagaactag
     1441 tggcataggc aatattttct tttacattca tatttggaaa aagcgcataa tcttgaaaaa
     1501 caaaaccaat ttttcttttt tgtaaagcta agctaaaatt ttttgaagaa tcaaaccaaa
     1561 gttcattatc tacttctata cgccccaatt taggctttat aagtcctgct atgattttta
     1621 aaagagtggt ttttcctgct ccactttcgc caaaaagtgc agtaattttt cctgattcta
     1681 tatctttttt aaaatttaaa tccagtcttc ctttagcagt atttatagga tgattgatat
     1741 caattcttat cattgaaaac tcattttttt attgacaaaa taaagactaa aaagcactaa
     1801 aaaagaaaaa ataaacaata taaaagcata ttgatgggct aagttatagt ttaagatttc
     1861 aagttcatcg taaatagcta tactagctac taaagtttca ccttgtttat gtcctcctat
     1921 catcatcacg actccaaatt cacccacagt atgagcaaaa ctcatcgcac aagcactaaa
     1981 aattcctgct ttagaattag gtaaaatcac tctaaaaaga gtataaattt tacctttacc
     2041 taaactataa gaagcatcga gcaaatttgg attgatcgat gaaaaggcac tttgcaaagg
     2101 atttaccata aaaggcaaag aaaaaatcaa agaagcaaaa acaagacctt caaaactaaa
     2161 aaccaaagaa agattaaaat attcttttaa aacttgccct aaaaaactat tagccgaaaa
     2221 agttacaagc aaataaaatc ccaaaacgct aggaggtaaa atcaaaggca aagaaataaa
     2281 gctttgaagg attgttttaa aaggaaaacg cacaaaactt aacaaataag ctaaaaatac
     2341 accaataaaa aaaagaataa aagtcgtgat aaaagcaagt ttaaaagtaa gataaagagt
     2401 ttgtaaaaaa gctggatcaa gcactatgac tccttaatac aatatcattt gcttttacaa
     2461 aacaaagcca ttcttgattt tcacaaattt caagttctaa agctttttct ttggtgataa
     2521 tactagaaag ttcgttacct ttaaaatcaa aaaatacctg atacaaaagt tcgccttttt
     2581 taatttttgt aattttagct aaaaaagaat tttcaacact taaaagagtt ttacttgtac
     2641 taaagcaaag ctcatgctct ttaaaaagaa gttctacact cgcaccaatt tttaaatttt
     2701 ctaagtattt taattcaagc attaaaatac taaaaatcac ttctttggaa agtattttaa
     2761 caataactat atcctcttga tttaaaagct cgcaaatttg tccttttata aggttcatgg
     2821 tgtgctaaat ccgtattttt taaaaatttc ttttgctttt gaagagccaa taaattcgct
     2881 aaattcaaag gctaattttt tatccttagc gtattttgtg ataacataac tttgctctaa
     2941 agggctaaaa tactttgtat caattataat agccttaccc ttaggatgat tgatagaaga
     3001 aactaaagaa taagccacta tagctatatc tgaatttttg ctatctacat gtaaaacagg
     3061 cactgagata ttttcgccta aaacgatttt atccttaaga agctcattta aacccaaatt
     3121 ttcaagcact tctttagctg ctactccata aggagctact ttaggattgg ctatgcttag
     3181 atgcgtgatt ttacctgcct tttcttttaa attttcaatg cctccttgga gtaaattttc
     3241 atccaaacta tacaaagcca aaactcctaa aacataaact tttggcttta ttaaagcatt
     3301 tttatcatca taaatagcct tagcatattt agtatccgct gaaaaaaaga gatcaaattc
     3361 tcttccttgt tttaaaagct cataatattt tccagaagca ccaaaaacca attctatttt
     3421 atcttctgga tgtgttttca aaaactcatc tttaacttca ctcatcgcct ttgaagctga
     3481 agaagctaca aaaatgctta aattttgtgc atttaaacac gaaacaaaaa acaaaatccc
     3541 aaaaaatact ataaactttt tcatttagtt ttccttgtgt aaaaatttaa tttttggatt
     3601 ataacacaaa aaattcattt tatatcattt ttgcataaaa taaatacagg atgataagtg
     3661 agtttgtttt gaaattt
//
LOCUS       DAEBKH010000137         3613 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.138, whole genome shotgun sequence.
ACCESSION   DAEBKH010000137 DAEBKH010000000
VERSION     DAEBKH010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3613
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.138"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            120..548
                     /locus_tag="KIL20_001506"
                     /pseudo
     CDS             120..548
                     /locus_tag="KIL20_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899959.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            550..1701
                     /locus_tag="KIL20_001507"
     CDS             550..1701
                     /locus_tag="KIL20_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HBD2721521.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELCTAKLVVQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GIAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNHRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(1705..2445)
                     /locus_tag="KIL20_001508"
     CDS             complement(1705..2445)
                     /locus_tag="KIL20_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaaA family protein"
                     /protein_id="HBD2721522.1"
                     /translation="MKILFSPSESKNENCVKNPINENSFIFKELFPYRMEALKHYEEF
                     IKNASLQNLQELFGIKNENEIDKFKHDLKQAPTQEAILLYTGVSYEYLNFKALDKKSQ
                     AYILENTLIFSNLFGVVRANDTLPFYKFKQGAKIGNFAIEKFYKEHFSKALDEYLENE
                     EILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISHFAKAYRGILLSISAKNQVKNNKEL
                     LANLPSNLKLKEIQIKGLKEEIVLEILD"
     gene            complement(2536..>3613)
                     /locus_tag="KIL20_001509"
     CDS             complement(2536..>3613)
                     /locus_tag="KIL20_001509"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721523.1"
                     /translation="FSACGNSIDEKTVKKYENQLNQTVKQEIASLSQDSGIKIEFSDF
                     KCNADGDFIACLSSNFKTLAKDNKDEYQELFQAKNIKIRSNEIYKGEANASISIKEYY
                     NDLFKNQKSIQSNLVFENFKLGEKVVSDINASLFQQDPKISSFINKLSSDSYTLSFDN
                     SINKQENNYLDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKGIKFNTQTLAMDEQA
                     INELLNMANYEQASDFSNTIQKYIILNNFKIDSTLKTEGVFSSYIATAKENLQTLKAQ
                     SQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYSTQGIDSIEKLSINNQ
                     DATEALKIILPFIMFSMLMGGASF"
BASE COUNT         1140 a          445 c          604 g         1424 t
ORIGIN      
        1 tatttttaaa ttctcttttt acttttttac caacttttta tgcacaatat gcaggtttta
       61 gtaaagaatt agctgatttt gctaaaaaag aaattccagc cttggctaat tttgctatta
      121 tttttggtcc ttatcttgga ttatttttta aaagaaaaaa tatttctttt aaaataatac
      181 tattgtctgg aggagcgtgt atttttatat gcggattttg tatgttgttt ttacaaaatt
      241 tagtattgat acagattttt gctgtgttat caggcatttt ttattctatg tggtttccat
      301 ttttctttaa tctaccttca gaattaaaaa attccaaccc aaatcaaact gcttatatta
      361 tgagtgcttt ttggagtatt acctttgtta tactatcatt taacctatgg gtagtatctt
      421 ggagtgttga taaaacccat agttttactt tgggttttgt ttatattttt gctttgattt
      481 ttatttcagc gatcttagca caatttgttt tacctagaag agaaaatttt atacaaggag
      541 aaaaatagaa tgaatttaat tccagaaata ctagacttac aaggcgaatt tgaaaaaatt
      601 cgtcatcaaa ttcatgaaaa tcctgagctt ggttttgatg aattatgtac tgcaaaatta
      661 gtggtgcaaa aattaaaaga atttggttat gaggtttatg aagaaatagg aaaaacaggt
      721 gttgtggggg ttttaaaaaa gggaaatagc gataaaaaaa taggacttcg tgcagatatg
      781 gatgctttgc ctttacaaga atgcacaaat ttgccttata aaagcaaaaa agaaaatgta
      841 atgcatgctt gcggtcatga tggacatact acttctttat tgcttgctgc aaagtattta
      901 gcaagtcaga attttaatgg cactctaaat ctttattttc aacctgctga agagggtttg
      961 ggtggtgcta aggcaatgat agaagatgga ttgtttgaaa aatttgatag tgattatgtt
     1021 tttggatggc acaatatgcc ttttggtagc gataagaaat tttatcttaa aaaaggtgcg
     1081 atgatggctt cttcggatag ttatagcatt gaagttattg gaaggggtgg tcatggaagt
     1141 gctccagaaa aggcaaaaga tcctatttat gctgcttctt tgcttgttgt ggctttacaa
     1201 agcatagtat ctcgcaatgt tgatccccaa aattcagcag ttgtaagcat aggagctttt
     1261 aatgcaggac atgcttttaa tatcattcca gatattgcaa cgattaaaat gagtgttaga
     1321 gcattagata atgaaactag aaagctaact gaagaaaaaa tttataaaat ttgtaaaggt
     1381 attgcacagg ctaatgatat agagattaaa atcaataaaa atgttgttgc accagtgact
     1441 atgaataacg atgaagctgt ggattttgct agtgaggttg caaaagaatt atttggcgaa
     1501 aaaaattgtg aatttaatca tcgtccttta atggcaagtg aggattttgg atttttttgc
     1561 gaaatgaaaa aatgtgccta tgctttttta gaaaatgaaa acgacattta tttacataat
     1621 tctagttatg tttttaatga taagctttta gctagggctg caagttatta tgcgaagcta
     1681 gctttaaaat acttaaaata aaaactaatc tagaatttca agcacaattt cttcctttaa
     1741 acctttgatt tgaatttctt tgagttttag gtttgaagga aggtttgcta aaagctcttt
     1801 attgtttttt acttggtttt ttgcacttat ggagagtaaa attcctctat aagctttagc
     1861 aaaatgactg atgactttac cattttttac aaatttataa gtataaaatt tcttttttgg
     1921 agtataaaat ttatcataaa atcctgctct aaggtcaagt atttcctcat tttctaagta
     1981 ttcatctaag gctttactaa aatgttcttt ataaaatttc tctatggcaa aatttcctat
     2041 tttagcccct tgcttgaatt tataaaaggg tagggtatca ttagctctta caacgccaaa
     2101 aagattagaa aatataagag tattttctaa aatataagct tggctttttt tatctaaggc
     2161 tttaaaatta agatattcat aacttacccc agtataaagc aatatagctt cttgggtggg
     2221 agcttgtttt aagtcgtgtt taaatttatc aatttcattt tcgtttttaa tgccaaaaag
     2281 ttcttgtaaa ttctgtaaac ttgcattttt gataaattct tcataatgct ttaaagcttc
     2341 cattctataa ggaaataatt ctttaaatat aaatgagttt tcattgatag gattttttac
     2401 gcaattttca tttttgcttt cactagggga gaataaaatt ttcattttag ccttttttgt
     2461 taatgttatg aaacattaag agcaaagaat ttaatcttgc ttttaatgtt tttgaagttt
     2521 ttatcatttt aaaatttaaa atgacgctcc gcccattaac atggaaaaca tgataaatgg
     2581 gagtataatt tttaacgctt ctgtggcgtc ttgattgttg atgcttagtt tttctatgct
     2641 gtcgattcct tgtgtgctat agtcactaac agggatgttt ttaaatttta aatcaaggtt
     2701 gagtttataa tcatcatttt gagtgatatt gtttaaaata gctaaagctt tatcaaagat
     2761 taatgcttgt tcttcatttt gactttgagc ttttaaggtt tgtagatttt ccttagcagt
     2821 tgctatatag ctactaaata cgccttcagt tttaagagtt gaatcaattt taaaattatt
     2881 taagatgatg tatttttgga ttgtattgct aaaatctgaa gcttgttcgt agtttgccat
     2941 attaagaagt tcattgatag cttgttcatc catagctaaa gtttgagtgt taaattttat
     3001 acccttagaa tcaaggtaat taagtaaatc ttcttttaga tttatattta gatttgtatt
     3061 gaaatttaat tttgcgttat aaaattttat atcaagatta tctagataat tgttttcttg
     3121 tttgttgata gagttatcaa atgataaagt ataagaatcc gagcttaatt tattgataaa
     3181 agagctgatt tttggatctt gttgaaataa gcttgcattg atgtcgctaa caactttttc
     3241 tccaagttta aaattttcaa aaaccaaatt tgattgtatg cttttttggt ttttaaaaag
     3301 atcgttgtaa tattctttaa tgctaattga tgcatttgct tcgcctttgt aaatttcatt
     3361 tgagcgaatt ttgatatttt ttgcttgaaa tagctcttga tactcatctt tattatcttt
     3421 tgcaagagtt ttgaaatttg aacttaaaca cgctataaaa tcaccatctg cattgcattt
     3481 aaaatctgag aattcaatct ttattccaga gtcctgagaa aggcttgcaa tttcttgttt
     3541 aactgtttga tttagttgat tttcatattt tttaactgtt ttttcatcta tggaatttcc
     3601 gcaagctgaa aac
//
LOCUS       DAEBKH010000138         3486 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.139, whole genome shotgun sequence.
ACCESSION   DAEBKH010000138 DAEBKH010000000
VERSION     DAEBKH010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3486
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.139"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            17..550
                     /locus_tag="KIL20_001510"
     CDS             17..550
                     /locus_tag="KIL20_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HBD2721524.1"
                     /translation="MKHNLTIWLTGLAGSGKSYIAQALYRKLKEKYDNVIYLDGDELR
                     ELLGCFSYDKKGRMDVSFKRSDFARFLSNQGMIVIVSAISMWNEIYEYNRKYLKNYFE
                     IYIKCEFEELKRRDKKNLYTQALKGEISNVVGVDIPYDEPNADLVIDNTQMAALDDKV
                     CLILTALSQNLDNSKCE"
     gene            551..1597
                     /locus_tag="KIL20_001511"
     CDS             551..1597
                     /locus_tag="KIL20_001511"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: protein motif:HMM:NF003166.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HBD2721525.1"
                     /translation="MLQVTHENFLDLKYFASGVFYPLEGFMNYEEYKKVIYEMQLLNG
                     EIWTLPITLEVDDFKDIYVGQKQDLYYQDKFIGNIQIEDKFCVQDRDLYEIFQTKDEK
                     HPGFIKEKKRSSLRVGGKIELKEEFYKDSLYKNILKDVFDTDIKTIVGFQTRNPIHRA
                     HEHLQRIALEICDALFINPLTGWKKQGDFTEAAVMSAYKTMFDEFYPKDRVYIQGLQT
                     AMRYAGPKEAIFHALLRRNMGCTHFIIGRDHAGVGDYYGIYEAQKLAKDLSMRYDLGI
                     DFLLLKEPYYCSKCQKIVSEKNCAHYKEHRIAISGTQIRKDLSEGKIPSELMMRSEIS
                     ASILALGRENIFID"
     gene            1608..2567
                     /locus_tag="KIL20_001512"
     CDS             1608..2567
                     /locus_tag="KIL20_001512"
                     /inference="COORDINATES: protein motif:HMM:NF012449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721526.1"
                     /translation="MKKLILTTGPSLGGKINLNQIHQDKFIYRINGAHGDIESIKNTI
                     INLRKQKADIDILIDLPGNKIRTSGISEAIQVEKDKDFSLKIDQFNYKEFYKLVKPGM
                     EVYANDSVFLFIVKEVNDKEIIFTSKSTGLLLNNKGMHVRNLHDNIPFLFEKDKELIK
                     LCNEFDIAYVGASFVRKASDIQELKQVLHSNTKIISKIETLEAVNNLYSILQEVEYIL
                     IDRGDLSTEIGIEKIPRFQNYIVEMAHHNAIKVFLATQILKNMEEKPIPTIAEIDDLY
                     NIAKSGVFGVQLSEETAVGHYVEECVKILNLIQDEINNEKIIL"
     gene            2577..>3486
                     /locus_tag="KIL20_001513"
     CDS             2577..>3486
                     /locus_tag="KIL20_001513"
                     /inference="COORDINATES: protein motif:HMM:NF013188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HBD2721527.1"
                     /translation="MKFESLSPENISIIFLSLGVLLFSSFVFGKLFTLFKAPKVIGEI
                     FGGFVLGASGLYIFAPDLLTDIFNGFNEQGKILNIFYQLGLIFLMFIAGFNTQISFEK
                     QNIKIISTLFLGGTFLSAGVGYFFIDYFKESFIGIKGNDLSFDLVFLIAIAVTSIPVI
                     SKIFFDIGVIKTRFASIVLTTSTIQDLFLWILLNITINAATNQDLTLMSNLKTAFLTL
                     FLFIAVKVISHFFEKISFRMSTIDFFTLSFVVLFLSIAFLNMIHINPMYTSFLVGFLI
                     KNILNNHQELREKVNGISDMAFSFFIP"
BASE COUNT         1252 a          358 c          597 g         1279 t
ORIGIN      
        1 tttgagcaga tgtgtaatga aacataattt aactatttgg cttacaggtt tagcaggaag
       61 tggtaaaagt tatatagcac aagcattgta tagaaaatta aaagagaaat atgacaatgt
      121 tatctatctt gatggagatg agttaagaga gcttttggga tgtttttcct atgataaaaa
      181 aggtcgcatg gatgtatcct ttaaacgatc cgattttgct cgttttttaa gtaatcaagg
      241 aatgatagtt atcgtaagtg cgatttctat gtggaatgaa atttatgagt ataaccgcaa
      301 atatttaaaa aattattttg aaatttatat aaaatgtgaa tttgaagagt tgaaaagacg
      361 tgataaaaag aatttatata ctcaagcttt aaagggtgaa atttcaaatg tcgtgggtgt
      421 agatattccg tatgatgaac caaatgctga tttagtgatt gacaataccc aaatggcagc
      481 acttgatgat aaggtttgcc ttattttaac agcactttct caaaatttag ataattcaaa
      541 gtgtgaataa atgctacaag ttactcatga aaattttcta gatttaaaat attttgctag
      601 tggtgtgttt tatcctttgg aaggttttat gaattatgaa gaatataaaa aagtaattta
      661 tgaaatgcaa cttttaaatg gtgaaatatg gaccttgcct attactttag aagtggatga
      721 tttcaaagat atttatgtgg gacaaaagca agatctatat tatcaagaca aatttatagg
      781 aaatattcaa attgaagaca aattttgcgt tcaagatcgg gatctttatg aaatttttca
      841 aactaaagat gaaaaacatc ctggttttat aaaagaaaaa aaacgctctt ctttgcgtgt
      901 tggtggaaaa atagaactta aagaagaatt ttataaagat tctttatata aaaatatttt
      961 aaaagatgtt tttgatactg atattaagac tatagtgggt tttcaaacaa gaaatcctat
     1021 ccacagagct catgaacatt tgcaaagaat tgcgcttgaa atttgcgatg ctttgtttat
     1081 taatcctcta acaggctgga aaaagcaagg agattttact gaagcagcag tgatgagtgc
     1141 ttataaaact atgtttgatg agttttatcc taaagataga gtttatattc aaggtttaca
     1201 aactgctatg cgttatgcag gtcctaaaga agctattttt catgctttac ttagaagaaa
     1261 tatgggttgt acccatttta tcattggtag agatcatgcg ggagtgggag attattacgg
     1321 aatttacgag gcgcaaaagt tggctaaaga tctatcaatg cgttatgatt taggtataga
     1381 ttttttactt ttaaaagaac cttattattg ttctaaatgt caaaaaattg tgagtgaaaa
     1441 aaattgtgca cattataaag aacatagaat tgcaattagt ggtacgcaaa ttagaaagga
     1501 tttaagcgag ggtaaaattc ctagcgaact tatgatgcgt tcagaaattt ctgctagtat
     1561 acttgcttta ggtagagaaa atatttttat tgattaaagg attgataatg aagaagctta
     1621 ttttaacaac aggtcctagt ttaggtggaa agataaatct taatcaaatt catcaagata
     1681 aatttattta tagaatcaat ggagctcatg gagatataga gagtattaaa aatactatta
     1741 ttaatttaag aaaacaaaaa gctgatattg atattttgat tgatttgcca ggaaataaaa
     1801 ttagaacttc agggattagc gaagctattc aagtagaaaa agataaggat ttttctttaa
     1861 aaattgatca atttaactat aaagaatttt ataagcttgt taaaccaggt atggaggttt
     1921 atgcaaatga tagtgtgttt ttatttattg taaaagaagt taacgataaa gaaattatat
     1981 ttacatctaa aagcacagga ttgcttttaa ataataaggg tatgcatgta agaaatttgc
     2041 atgataatat tcctttttta tttgaaaaag acaaggaact tataaagctt tgcaatgagt
     2101 ttgatatagc ttatgtagga gcttcttttg taagaaaagc aagtgatata caagaattaa
     2161 aacaagtgct tcattcaaat actaagatta tttctaaaat tgaaacttta gaagcagtga
     2221 ataatttata cagtattttg caagaagtag aatatatttt aattgataga ggagatttat
     2281 ccacagaaat tggtatagaa aaaattccac gttttcaaaa ttatattgta gaaatggcac
     2341 atcataatgc aattaaagta tttttagcta cacaaatttt aaaaaatatg gaagaaaaac
     2401 ccattcctac tattgcagaa attgatgatt tatataatat cgcaaaaagt ggagtttttg
     2461 gtgtgcaact ttctgaagaa acagctgtag gacactatgt agaagaatgt gttaagattt
     2521 taaatttaat acaagatgaa atcaataatg aaaaaatcat tctttaagaa agcaatatga
     2581 aatttgaatc tttaagtcct gagaatatta gtattatatt tttatcttta ggagttttat
     2641 tattttcttc ttttgttttt ggaaaattat ttactttatt taaagcccca aaagtaattg
     2701 gtgaaatttt tggtggtttt gttttggggg caagtggttt gtatattttt gctcctgatt
     2761 tacttacaga tatctttaat ggatttaacg agcaagggaa gatattaaat attttttatc
     2821 aattaggttt gatattttta atgtttattg cagggtttaa tacgcaaatt agttttgaaa
     2881 aacaaaatat taagattatt tctactttat ttttaggtgg tactttttta tctgctggtg
     2941 tgggatattt ttttattgat tattttaaag aaagttttat tggaataaag gggaatgatt
     3001 tatcttttga tttggttttt ttaatagcca ttgctgtaac ttctatacct gtgatatcaa
     3061 aaatattttt tgatatagga gtgattaaaa caagatttgc aagcatagtt ttaaccactt
     3121 caacaataca agatttgttt ttatggattt tactaaatat tactattaat gccgcaacaa
     3181 atcaagattt aactttaatg agcaatctta aaaccgcttt tcttacttta tttttattta
     3241 tagctgtgaa ggtaatttct catttctttg aaaaaatttc ttttcgcatg agtacaattg
     3301 atttttttac tttaagcttt gttgtgttat ttttatctat agctttttta aatatgattc
     3361 atatcaaccc tatgtatact tcatttcttg taggtttttt aataaaaaat attttaaata
     3421 atcatcaaga attaagagaa aaagttaacg gtatttcaga tatggctttt tcatttttta
     3481 ttccta
//
LOCUS       DAEBKH010000139         3425 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.140, whole genome shotgun sequence.
ACCESSION   DAEBKH010000139 DAEBKH010000000
VERSION     DAEBKH010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3425
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.140"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..500
                     /locus_tag="KIL20_001514"
     CDS             <1..500
                     /locus_tag="KIL20_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HBD2721528.1"
                     /translation="LGYSIPAAALGISIIVLFVFLDKIFHMSLLGNSLLVLVFAYVIR
                     FLASAIYSLEGGYNKIHLNIDEASLNLRTSYFILFFKIHTPLMKHFLFLAFIIVFIDT
                     IKELPLSRILAPFGFETLSVKAFWFASDERIYDAALPSLFIVFLSLMVVVWMDKITRK
                     DDVRN"
     gene            484..1392
                     /locus_tag="KIL20_001515"
     CDS             484..1392
                     /locus_tag="KIL20_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD2721529.1"
                     /translation="MMLEIKNLSKNFGKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAIARGCKLLLLDEPFSNLDQNLKQDLRRE
                     LKKIIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEKKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFYRLKLRY
                     KNIEFFMLLSSNYNLEEKINFDIINF"
     gene            1428..2633
                     /locus_tag="KIL20_001516"
     CDS             1428..2633
                     /locus_tag="KIL20_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HBD2721530.1"
                     /translation="MKNLLIIGAGGVSRVATAKCAMNSDTFSKITLASRTKSKCDEIA
                     AFIKERLGVQIETAQIDADDSNAVVELIKKTGAQILLNVALPYQDLSLMDACIKAGID
                     YVDTANYEHPDLAKFEYKEQWARNDEFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVM
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(2661..3323)
                     /gene="sodB"
                     /locus_tag="KIL20_001517"
     CDS             complement(2661..3323)
                     /gene="sodB"
                     /locus_tag="KIL20_001517"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HBD2721531.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
BASE COUNT         1180 a          451 c          615 g         1179 t
ORIGIN      
        1 ctttgggtta ttctatacct gctgctgctt tagggattag cattatagtg ctttttgtat
       61 ttttggataa aatttttcat atgagtttat taggaaattc tttacttgtt cttgtttttg
      121 cttatgtaat tcgtttttta gcgagtgcaa tttattcttt agaaggaggt tataataaaa
      181 ttcatctaaa tattgatgag gcaagtttaa atttaagaac gagttatttt attttatttt
      241 ttaaaattca cacaccttta atgaaacatt ttttattttt ggcttttatt attgttttta
      301 ttgatacgat taaagaactt cctttaagta gaattttagc gccttttggc tttgaaactt
      361 taagtgttaa agctttctgg tttgcaagtg atgaaagaat ttatgatgca gctttgcctt
      421 ccttgtttat cgtttttctt tctttaatgg ttgttgtttg gatggataaa atcacaagga
      481 aagatgatgt tagaaattaa aaatttatct aaaaattttg gaaaaataca agctttagaa
      541 aatatcaatc ttcatgtcaa agaaggagaa tttttaagca ttttaggagg tagtggaagc
      601 ggaaaaagca cgcttttaag gattattgct aagcttgaac aagctagttc ttatgatttg
      661 ttttcttgca aaggtgaagt ggctttgatg tttcaaaatt atgctttatt tcctcattta
      721 aatgttgaga aaaacatact ttttgcactt tacgataaaa aagataaaaa tcaaatttta
      781 aatcatttgc ttaaaacttt tgaaattgaa gatttaagat ataaaaaaat cgatgaaatt
      841 tcaggagggc aagcgcaaag agtggctttt gctagagcta tagcaagagg atgtaagctt
      901 ttgcttttag atgaaccttt ttctaatttg gatcaaaatt taaaacagga tttaagaaga
      961 gaattgaaaa aaataataga aaatcaaggc attacggcta ttatggtaac tcatgatatt
     1021 gaagatgctt attgtatgtc tgatcaaatc gcttttttag aaaaaggaaa aattttagct
     1081 catgcaaatc ctaaagagct ttattttaag cctgatttta aaagtgcgca aattttacct
     1141 gatttaaata tcatagaaaa aaaacttgat ttagaagatg aattttttgc ttggatagct
     1201 tcaaaaaatt atatttttgg ttatgcagaa cttaaaatag gaaatcgctt tgaggctaaa
     1261 attttacaaa aagaattttt aggggctttt tatagactta agttaagata taaaaatata
     1321 gaatttttta tgttattaag ctcaaattat aacttagaag aaaaaataaa ttttgatatt
     1381 atcaattttt agctaaaatt cctaaaaatc ttttaaggac aaatttcatg aaaaatcttt
     1441 taatcatagg cgcaggtggg gtaagtcgtg tggctactgc aaaatgcgca atgaattctg
     1501 atacttttag caaaatcact ttagctagta gaacaaaaag caaatgtgat gaaatcgctg
     1561 cttttatcaa agagcgttta ggggttcaaa ttgaaacggc gcaaattgat gctgatgata
     1621 gcaatgcggt tgtagaactt atcaagaaaa caggagcgca aattttactc aatgttgctt
     1681 tgccttatca agatttgagt ttaatggatg cttgtataaa agcagggatt gattatgtag
     1741 atacggcaaa ttacgagcat cctgatttag ctaaatttga atacaaagag caatgggcga
     1801 gaaatgacga gtttaaacaa gcaggaattt taggactttt aggaagtgga tttgatcctg
     1861 gtgtaactaa tgttttttgt gcttatgcac agcaaaattt atttgatgaa atttcttata
     1921 tagatatttt agattgcaat gcaggtgatc atggctatgc ttttgcgacc aatttcaacc
     1981 ctgaaatcaa tctacgtgag gtttctgcta aagggcgtta ttgggaaaat ggcaagtgga
     2041 tagaaacgca gccgatggaa ataaaaatgg agtgggatta tccagaagta ggcgtaaaag
     2101 atagctattt gctttatcat gaagaacttg aaagcttggt aaaaaatatc aaaggtttaa
     2161 aaagaatacg cttttttatg acctttggac aaagttattt aactcatatg aaatgccttg
     2221 aaaatgttgg aatgctaggg attaaacctg tgatgcacca aggaaaagaa atcattccta
     2281 tagaattttt aaaaaccttg cttcctgatc ctgcgagttt ggggccacgc actaaaggtt
     2341 ataccaatat aggttgtgtg attcgtggta aaaaagatgg aaaagacaag caagtttata
     2401 tttataatgt ttgcaatcat gaagaatgtt acaaagaaac tggcgcacaa gctgtgagct
     2461 atactacagg tgttcctgct atgataggta cgaaattaat cgctaaagga atttggcaag
     2521 gaaaaggcgt gtttaatatg gaagaatttg acgctaagcc ttttatggaa gagctgaatt
     2581 ctcaaggact tccttggaag attatcgaaa tgactccgag tttaggagag taaaaaaggc
     2641 atcgttttga tgcctttaaa ttattttaca gggtgaagtt catttgcata aaagctaact
     2701 gatcccatgc cttcttttaa agcccattcg taagcttttg caacaaattc ccaattaata
     2761 tgagcataga atttctctaa ataagcaggg cgtgcattac gatgatctac ataataagca
     2821 tgttcccaaa catctacaac aagcaaagga actttatctt cagtaattgg tgtagctgcg
     2881 tttgaagtac ctacaaattc tagtttttga tttttagtat tataaactaa ccaaaaccat
     2941 cctgaaccaa aaactcctgt agcacctttg atgaattcag ctttgaaatt ttctaaagat
     3001 ccaaattctt tttctagtgc cgcttgtaaa ttagcatcta tactttgaca tgaaccgcca
     3061 cagccacagc ctgtacttgg cttaatgcaa tcaaaataaa aatcatgatt ataaacttga
     3121 gctgcgttat taaatacgcc cccatttgaa gttttgataa tacttacaag atctttacct
     3181 gcaaattcag tatctttaat aagattattt agatttgtaa cataagtatt gtgatgtttt
     3241 ccatgatgat agctaaaagt ttcagcactc aaaaaatcac caaaagcatt ggtatcataa
     3301 ggtaattttc ttaattcaaa cataatttct cctttatttt tagtttgata ttgaaaatat
     3361 taccataata atattaaaaa gagtaaaaat atcttaaaag cttagtgggt aaaatttcta
     3421 tttat
//
LOCUS       DAEBKH010000140         3310 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.141, whole genome shotgun sequence.
ACCESSION   DAEBKH010000140 DAEBKH010000000
VERSION     DAEBKH010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3310
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.141"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            8..832
                     /locus_tag="KIL20_001518"
     CDS             8..832
                     /locus_tag="KIL20_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013463379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HBD2721532.1"
                     /translation="MRSYLSCEENRAFLKGKLLFNEHIKRNLIHKERFFTSNDEFVLD
                     IAPNRLIKSTLNFLKSKTSLNKFRLIKAMQMLDEVEFSKNYEKDFSYKISRHFDYYEN
                     LLLWCKIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNPTQDIKVQNNGK
                     YLISKNDEKCFMLKPDLYIENKMILDTKWKIPNDSEDEKKQGIEQSDLYQMFAYACKF
                     KIYDIKLVYPLCEKTQDLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVLFAPLPF"
     gene            complement(821..1624)
                     /locus_tag="KIL20_001519"
     CDS             complement(821..1624)
                     /locus_tag="KIL20_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HBD2721533.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKHYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLIFLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKRLGFI
                     MILASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLVHLIGKFLKR"
     gene            complement(1617..2471)
                     /locus_tag="KIL20_001520"
     CDS             complement(1617..2471)
                     /locus_tag="KIL20_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HBD2721534.1"
                     /translation="MLFFEISNLNYTYDNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQRKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEENCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            complement(2484..>3310)
                     /locus_tag="KIL20_001521"
     CDS             complement(2484..>3310)
                     /locus_tag="KIL20_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HBD2721535.1"
                     /translation="KNLEQEQNTSSNLVSVSIAPQAFFVKKIAADTLDVNVILPPNSN
                     EHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQNFPKLQVVNMQKNIALIQTHD
                     THEHSHEHEEHEHFDPHTWLDPILVQTMALNIYDALIQKYPQNKNLYKQNLDKFLAEL
                     DSLNLQIASKLEKLKNRDFVVYHPSWTYFAKRYNLTQIPVEILGKEPKSKDLQKLITL
                     MKDKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDHLSYDWENELLKTADAFSHNL"
BASE COUNT         1203 a          482 c          486 g         1139 t
ORIGIN      
        1 aggcttgatg agatcttatc taagttgcga agaaaatagg gcttttttaa agggaaaatt
       61 actatttaac gagcatatca agcgaaattt gatacacaaa gaaagatttt ttacaagcaa
      121 tgatgagttt gttttagata tagcacccaa tcgcttgata aaatcaacgc taaatttttt
      181 aaaatccaaa acaagtttga ataaatttag acttataaaa gccatgcaaa tgcttgatga
      241 ggtagaattt tctaaaaatt atgaaaaaga ttttagttat aaaatttcaa gacattttga
      301 ttattatgaa aacttgcttt tgtggtgtaa aattttctta aaaaatgaaa gttttatgcc
      361 ttatcatggt aaaaatgaag cttttgcttt gctttttcct atggagaaaa tttttgaaga
      421 ttatgtagct tatatgctaa aaaaagtaaa tccaactcaa gatattaaag tccaaaacaa
      481 tggaaagtat ttaatctcaa aaaatgatga aaaatgtttt atgttaaagc ctgatttata
      541 tatagaaaat aaaatgatcc tagataccaa atggaaaatt ccaaatgata gtgaagatga
      601 gaaaaaacag ggtatagaac aaagcgattt gtatcaaatg tttgcttatg cttgcaaatt
      661 taaaatttat gatattaaac ttgtgtatcc tttatgtgaa aaaactcaag atttacaaag
      721 aaaaatcgca gaaaaatttt ttgtttttaa ggcaagcgaa catttgtatt ttaaagaaca
      781 agggcaaaaa gatataaaag tgcaagtgtt attcgcacct ttaccttttt aaaaatttgc
      841 ctatcaaatg cactaaaaaa ccaaaacaag ctacagctat gatgcaagca ccgcttgaga
      901 gattaagata atagctaagt ataagtccta aaacacaaaa aatcatactt aaaaaacttg
      961 ccaaaatcat gataaagcca agtcttttag taaaattttc agcaataaag cttgggatac
     1021 taagtaaagc cataaccaaa ataagcccta caaggcgtat agaaataact atacaaaaag
     1081 ccataagggc gattaaaaga taatgaaaaa aacttgtatt gataccacga acttttgcaa
     1141 attccgcatc aaagcttaat gcttcaaatt gtctataaaa taaaaagatc aaaagtacca
     1201 ccacgctatc aaccaaagcc ataagccata aatcttgtgt tcctacagcc aaaatgctcc
     1261 caaaaagata agccattaaa tctgtgttat aactagggct taaatcgatt aaaataatcc
     1321 caacagccat tccaaaagcc cagattacag cgataatact atcacttctg tgttcatagt
     1381 gtttagctaa aaaagctact aaaaaagcca aaaataaagt aaatattccc gtgcttaata
     1441 aaataggcaa agagaaataa aaagctatgc ctataccacc aaaagcccca tgtgttatac
     1501 ctccagccat agaaaaaaga cgatttatca tcaccaaagt acctatgatc ccacaagcta
     1561 tactgactaa aatcgctcct agtaaagcgt tttgaaaaaa ggtgaaattt aaaatttcaa
     1621 gcattatttt cctttgaaaa ttttaaacaa aaattttctt ttttaaattc tgtttttttc
     1681 aaatttcttc ttgtaaattc ttgttcgcat agttttttac tatcgcaatt ttcttcatcg
     1741 caaaaacaag tatttaaact catttctaca tcacaaaaat gagagtggtt ttcgtataag
     1801 tgttttaaaa atgaactttt ttctttttct ttagtattgg tatgcaagaa aagttctttg
     1861 tttaaatgtg caattttatc gctataagct aatacaaggt tgatatcgtg acaaatgagt
     1921 aaaattccca tacctttttg gtgcaaggag cttagaagtt caaaaatttg tatagcagac
     1981 ttgttatcaa cgcttgcggt aggttcatct aaaataagca tcttacattc actagctaag
     2041 gctcttgcga taaaaacacg ttgtctttgt cctccgctta gagaatcaat ggttttgttc
     2101 caaaattttt ccattcctac gctttttaaa gcttgcatag ctttttcttt atcttttttc
     2161 ccataaaaac caaaaatttt tttacttaca agtcccataa gaacgatttc aagtactctt
     2221 ggacaaaaat taggattggc tagagtgtgt tgaggaacat agcctatttc ttttctttga
     2281 agagctttga aatggatttc atttttggat tttaaaagcc ctaagataag ttttacaagt
     2341 gttgattttc ctgcaccatt tggacctatg atagagagaa agtctttatt gtcatagcta
     2401 agattgatgt tttttaagat gatttcatta tcataagtgt agtttagatt agaaatttca
     2461 aaaaaaagca tgaaaaagcc tgattataaa ttatgagaaa aggcatcagc agtttttaaa
     2521 agctcatttt cccaatcata agataaatga tctattttgt aaatttttgc atcacattct
     2581 ttagcaagtg tttttgctgc attttcaggg aaaccatttt gaacaaaaat gacttttaaa
     2641 tttttatctt tcattagagt gataagtttt tgcaaatctt tgctttttgg ttccttgcct
     2701 aaaatttcta caggaatttg cgtaagatta tagcgttttg caaaatatgt ccaagaagga
     2761 tgataaacta caaaatctct attttttaat ttttctaatt ttgaggcaat ttgtaaattt
     2821 aaactatcta attctgctaa aaatttatct aaattttgtt tatataaatt tttattttgt
     2881 ggatattttt gaattaaggc gtcataaata tttaaagcca tagtttggac taaaatagga
     2941 tctagccaag tatgaggatc aaaatgctca tgttcctcat gttcatgaga gtgttcgtgt
     3001 gtatcatgag tttgaatcaa agctatgttt ttttgcatat ttacaacttg aagttttgga
     3061 aaattttgtt taaatttatc cgtaaaaact ttttcaaatt ctaagcctat ggtgaaataa
     3121 atatcacttt tttcaagttt tttcatagtg cttggtttaa attcaaaatt atgctcattg
     3181 ctatttggag gtaagataac attgacatct agagtatctg cagctatttt tttaacaaaa
     3241 aatgcttgag gtgctatgct gacactaact aaattgctac tagtattttg ttcttgctct
     3301 aaatttttag
//
LOCUS       DAEBKH010000141         3303 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.142, whole genome shotgun sequence.
ACCESSION   DAEBKH010000141 DAEBKH010000000
VERSION     DAEBKH010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3303
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.142"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..267
                     /gene="trxA"
                     /locus_tag="KIL20_001522"
     CDS             <1..267
                     /gene="trxA"
                     /locus_tag="KIL20_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HBD2721536.1"
                     /translation="EGVALVDFWAPWCGPCRMLAPVIDELANDFDGKAKICKVNTDEQ
                     GDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNSLL"
     gene            401..1339
                     /gene="trxB"
                     /locus_tag="KIL20_001523"
     CDS             401..1339
                     /gene="trxB"
                     /locus_tag="KIL20_001523"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HBD2721537.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWNEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKRAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIKLITSASVDEVYGDKMGVTGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDGKFLCNMEEAGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(1377..3158)
                     /locus_tag="KIL20_001524"
     CDS             complement(1377..3158)
                     /locus_tag="KIL20_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HBD2721538.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAAMLKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDESKIIDMNAVKNAHLVFGDNDDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDVLYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGVAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSSDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNIDEANRFGWIVEINPFDVK
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKHKYKKGADTSKI
                     LDEGTLYVGQFNGKVGDFKGQGKWIALEYGKNGLDEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYEGMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVMMIRKLDGGVIGS"
BASE COUNT         1069 a          544 c          521 g         1169 t
ORIGIN      
        1 gaaggtgtag ctttagttga tttttgggct ccatggtgcg gaccttgtag aatgcttgct
       61 ccagttattg atgaacttgc aaatgacttc gatggtaaag ctaaaatttg caaagtaaat
      121 acagatgaac aaggtgattt agcagctgaa tttggtgttc gctctattcc tacacttatt
      181 ttctttaaaa atggtgaagt tgtagatcaa ctcgttggtg cacaatctaa acaagcaatt
      241 agtgataaac taaactcttt actataaact aaaggctagt ataactagcc ttcttcttaa
      301 aaatttcaaa tttatactaa ataataattt ttattaacta ctattaagaa taatttttat
      361 atcattatta ataataaaat tcaatataaa ggaaatgtaa atgttagatg tagcaatcat
      421 aggtggaggt cctgctggac ttagtgccgg actttatgca actagaggtg gtcttaagaa
      481 tgtagtaatg tttgaaaaag gtatgcctgg tggacaaatt acctcaagtt ctgaaataga
      541 aaattatcca ggtgtagccc aagttatgga tggaatttct tttatggctc cttggaatga
      601 acaatgtatg cgttttggtt taaaacatga aatggttgga gtagagcaaa ttttaaaaaa
      661 tagtgatgga agttttacca tcaaattaga aggtggcaaa acagaacttg ctaaagctgt
      721 gatagtttgt acaggttcag ctccaaaaag agcaggtttt aaaggcgaag atgaattttt
      781 tggaaaaggt gtaagcactt gtgcaacttg tgatggattt ttttataaaa ataaagaagt
      841 tgcagtttta ggtggtggag atacggcttt agaagaagct ttgtatctag caaatatttg
      901 ttctaaagtt tatcttatcc accgcagaga tgaatttaga gcagctccat ctacagtaga
      961 aaaagttaag aaaaatgaaa aaataaaact cattactagt gcaagcgtag atgaagtata
     1021 tggtgataaa atgggtgtta ctggtgtaaa agtaaaatta aaagatggta gtattagaga
     1081 tttaaatgtt ccaggaattt ttacttttgt tggtcttaat gtaagaaatg aaattttaaa
     1141 acaagacgat ggtaagtttt tatgcaatat ggaagaagct gggcaagtaa gtgttgatct
     1201 taaaatgcaa actagcgttg ctggactttt tgccgcagga gatcttagaa aagatgcacc
     1261 taagcaagtt atttgtgctg caggtgatgg agctgtagct gcattaagtg ctatggctta
     1321 tatagaaagc ttacattaag attttataaa gttgctaaaa gcaactttat ttttatttag
     1381 cttcctatca ctccaccatc aagttttctt atcatcatta cactcgatct tggcgttttt
     1441 ccataaggaa aagtactacc ttttaaacct tctcctggat gttgtatacc tacaaacatt
     1501 gtggtataat cctcactaaa agcaatccct gttaattcac aagcaatagg tcctgttaaa
     1561 aaacgtctga tttcccctgt ttttggattt gctgctaaca tgcagttatt tcccatgcct
     1621 tcgtattcat ctttattaga ataagatcca tctgtttgta tccaaagtct tccatctcta
     1681 tcaaatttaa gtccatcagg agaattgaat ttattttcac ttgtaatatt atttgagcct
     1741 ttatataagc cttgttggtt atcaggattt ccagcaagag caaaaatttc ccaagtaaaa
     1801 tcatcgtctt tatgagaatt ttttggcatc cattttaaaa tttgtccata aacattttta
     1861 gttcttggat ttgctgcatt aggttcttgg cgatttttat tatttgttag tgttgcaaat
     1921 acttctttag aaccactttg tttatgactt gctatccatt cacatctatc cataggagtt
     1981 gcacctacaa tgcttgcagc aagacgcgta ttaatgagta cttgagcttg agacttaaaa
     2041 ccattttttt catctaggcc gtttttgcca tattctaagg ctatccattt tccctgtcct
     2101 ttaaaatctc ccaccttgcc gttaaactgt cctacataca aagtgccttc atctaaaatt
     2161 ttacttgtat cagcaccttt tttgtattta tgtttgctaa caaatttata aataaattca
     2221 ttcatctcat catcacccat ataaactata acagaaccat ctttttctac gataatttct
     2281 gcattttcat gtttaaaacg acctaaagaa gttcttttaa caggtgtgct ttttacatca
     2341 aaaggattga tttccactat ccaaccaaaa cgattggctt catcgatatt tttagctaaa
     2401 tcaaatcttt catcaaattt ttcccatcca taaagactag ttttgttaaa tccatagcgc
     2461 ttaagagagt cattaaattc tagattttca tctgaacttc caaaaaaatc gtcaaaattt
     2521 tcttcacagg tgatataagt tccccaaggt gtttgtccat ttgcacaatt tgcaaaagtt
     2581 ccatgaacaa atttttcatt ttttaaaact tcttttttag ctactccact tacttgcatt
     2641 ttagtgtttg catcgattct gcgattatat ttagagtcta aaaccacagt ccaatcatca
     2701 cccttttttt cgatttctaa gatacttaca cctacactag cttgctcgta taaaacatct
     2761 tctttgctta aatttttacc atgatgatta aacatgattt caggatttat atattcatta
     2821 ttaacggcta aaattcctct gttttttgaa agtggaaaaa aactcatacc atcatcgtta
     2881 tctccaaaaa ccaaatgagc atttttaact gcattcatat cgatgatttt actttcatca
     2941 taaggttttg ctttactaaa aagtggatca ccccaagaaa ttaaaacctt tgcttcataa
     3001 ccttgtggta ctataacttt atcttgcgtg cttgcactaa cagctttaaa acctagcaaa
     3061 tccttatcct taagcatagc agcacttaaa tttgaacttg caaaaaaagc caccatagaa
     3121 cctaaagctg aaccttttaa aaacaatctt ctttccattt gtttttactc catattaaaa
     3181 tttaaaacaa tggaagtata aaaatatttg gaaacttttt agaaactttg atgaaaattt
     3241 aaattgaagg aaaaatttat acctagtttt tcactaggta taaatgatta attaaaatct
     3301 ttt
//
LOCUS       DAEBKH010000142         3147 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.143, whole genome shotgun sequence.
ACCESSION   DAEBKH010000142 DAEBKH010000000
VERSION     DAEBKH010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3147
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.143"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            8..2071
                     /locus_tag="KIL20_001525"
     CDS             8..2071
                     /locus_tag="KIL20_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HBD2721539.1"
                     /translation="MISIFLSSSAFARVDDYINEANLIKDMLKQSIETYKKGDNLGAK
                     KLSEDAYFQHFENMEGPIGRNIGRKAITMERKFVNLRRMYKDEAPLTQINALIDSLYY
                     DLDEVAPILQNGYRLKAEASDTNYDKAKAEKSSLEANAKREADAEALIAQMMGVDKKD
                     LAQSSLTTQASTPANNDTSKLTDDNASADLQAAAAMDARLQFILDNISTKFSQAANAF
                     KEKNYQASKDFLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLIRQINDAKID
                     EKGLRDGLDNIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSNDIKLALDEI
                     LKNYDGFSASIVDDLQGIYLDIFEASGMENKIGAVDSGLKLKIESLFSKGVALIKASA
                     DKKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALIIVVAIVSYLV
                     QSGNKNRLNIAYSALFTGVILSFVTAFGVSWLFKENAGQSRELIEGITMLIAVLLLFY
                     VGFWLLSNAQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAETVLFYQALLF
                     DAKTSTDFSAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYIIFYMVFVFTG
                     KGIAELIEGKVIIPSLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIGILITKQISK
                     KGVKS"
     gene            2068..2607
                     /locus_tag="KIL20_001526"
     CDS             2068..2607
                     /locus_tag="KIL20_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HBD2721540.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            2689..>3147
                     /locus_tag="KIL20_001527"
     CDS             2689..>3147
                     /locus_tag="KIL20_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HBD2721541.1"
                     /translation="MSIYFVHFLISVLPLSILMAFITPDKKYIFKSFLVVFLGFLFGY
                     FAFFIAAQFLKTENLIFNFDFVFIGLLLVSFIFYFWKKIEILNFILLGILSFCTALHY
                     YFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIFFFLKWQKNFNQKTS"
BASE COUNT         1071 a          460 c          545 g         1071 t
ORIGIN      
        1 atttttaatt ataagtattt ttttatcaag ctcagctttt gctagagtag atgattatat
       61 taatgaagca aatcttatca aagacatgct aaaacaaagc atagaaactt acaaaaaggg
      121 tgataatcta ggtgctaaaa agcttagcga agatgcgtat tttcaacatt ttgaaaatat
      181 ggaaggccct ataggaagaa acataggaag aaaagccatc accatggagc gtaaatttgt
      241 aaatttgcgt cgtatgtata aagatgaagc tcctttgaca caaattaatg ctttaattga
      301 tagtctttat tatgatcttg atgaagtagc ccctatttta caaaatggat atcgtttaaa
      361 agcagaagca agcgatacaa actatgataa ggctaaagct gaaaaatcaa gcctagaagc
      421 caatgccaaa cgcgaagctg atgcagaagc tttaatcgca caaatgatgg gcgtggataa
      481 aaaagattta gcacaaagtt ctttaaccac ccaagcttct acacctgcaa acaacgacac
      541 aagcaaactt acagatgata atgcaagcgc tgatttacaa gctgccgctg caatggacgc
      601 aagattgcaa tttatactag ataacatctc taccaaattt tcacaggcag ctaatgcttt
      661 taaagaaaaa aactaccaag ctagtaaaga ttttttaaat gatgccttat ttagtgatta
      721 tcgcaatacc aaagtagaaa ttttagtaaa taaatttacc aaagcaggaa acgatcaaaa
      781 aattcaacaa gccatacgca cccttatacg ccaaatcaac gatgcaaaaa tagatgaaaa
      841 aggcttaaga gatggcttag ataacataga agaacaaatt tttgatgttt tcttacaaat
      901 tccaaattca gaactttcaa gtttgcaaat ttcaggcttt aatgatgaaa caaaaggcaa
      961 agattatgcc aaagtttcta atgatatcaa acttgcttta gatgaaattt taaaaaatta
     1021 tgatggcttt agtgcttcta tagtagatga tttacaagga atttatctag atatttttga
     1081 agcaagcggt atggaaaata aaatcggtgc tgtagatagt ggcttaaaac ttaaaataga
     1141 aagtttattt tccaaaggtg tggcactgat taaagcaagt gcagataaaa aagagcttga
     1201 agctactttt aatgacttag aacaactcat agcaagcagt gtggataaaa ttcaagattc
     1261 tactccttat tcgctgttta tatgggcttt aggtattatt ttgcgtgaag gcttggaagc
     1321 tttgattatc gttgtagcca ttgtttctta tcttgtgcaa agtggtaata aaaatcgtct
     1381 aaatatcgcc tatagtgctc tttttacagg agtgatttta agttttgtta ccgcttttgg
     1441 agtttcttgg ctatttaaag aaaatgcagg acaaagtaga gagcttatag agggtattac
     1501 catgcttata gccgtattac tactctttta tgtgggcttt tggttacttt caaacgcaca
     1561 aaataaaaaa tggacaagct ttatcaaaca aggtgctata gatgctatat caaacaatag
     1621 tgcaaaaacc ctttggatta ccgtattttt agctgtttat agagaaggtg cagaaactgt
     1681 gcttttttat caagccttgc tttttgatgc taaaacaagc actgatttta gtgctgtttt
     1741 tggtgggctt ggacttggaa ttttaatact tattgtttta tattttcttt taaaagcagg
     1801 agccattcgc atacctgtaa aacaattttt ctatatcact tcttacatta ttttttacat
     1861 ggtttttgtt tttacaggca aaggcatagc tgaactcata gaaggaaaag tcattattcc
     1921 tagtcttata cctatgaatt ttgaaccgat tttatggctt ggaatttatc cttactatga
     1981 aaccttaatc cctcaattta tagttttgat catgctaatt attggcattt taataacaaa
     2041 acaaatttca aaaaaaggag taaaatcatg ataaaaaaag ttttatcagt agttgctgca
     2101 gctgcggtta ttagtacaaa tttatttgca ggcgaagtgc caatcggcga tccaaaagaa
     2161 cttaatggca tggaaatagc cgctgtttat ttacaaccta ttgaaatgga accaagaggt
     2221 attgatctag ctgcgtcttt agcagatatt cacctagaag ctgacattca cgcacttaaa
     2281 aacaatccaa atggttttcc agaaggtttt tggatgcctt atttaaccat agcctatgaa
     2341 cttaaaaata ccgacacagg tgcgattaaa cgcggaactt tgatgcctat ggtggctgat
     2401 gatggtcctc actatggcgc aaatatcgct atggaaaaag ataaaaaagg tggctttggc
     2461 gtaggaaatt atgaacttac tttttatatc tcaaatccag aaaaacaagg ttttggacgc
     2521 catgttgatg aagaaacagg cgtgggtaag tggtttgaac cttttaaagt agattataaa
     2581 ttcaaataca caggcacgcc aaaatgattt tacactcgga ttttccgagt gtttaaatat
     2641 ttttattttt attgaaaaat taaaataaca atgtttaaag agtaaattat gagtatatat
     2701 tttgtgcatt ttcttatcag tgttttaccg ctaagtattt taatggcctt tatcactcct
     2761 gataaaaaat atatttttaa aagtttttta gtagtttttt tgggcttttt atttggatat
     2821 tttgcttttt ttatcgcagc acaattttta aaaaccgaaa atttaatctt taattttgat
     2881 tttgttttta taggtttatt gctagtaagc tttatatttt atttttggaa aaaaattgaa
     2941 attttaaatt ttattttatt gggaatttta agtttttgca ccgctttgca ttattatttt
     3001 ttaagtcaag atttccctat ttttactagt tctttaatcg atagcgaagg tataagttct
     3061 ttaggtttta ttgctttagc cttgcttgtt tgtattttga ttttcttctt tttaaaatgg
     3121 caaaaaaatt ttaatcaaaa aacaagc
//
LOCUS       DAEBKH010000143         3126 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.144, whole genome shotgun sequence.
ACCESSION   DAEBKH010000143 DAEBKH010000000
VERSION     DAEBKH010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3126
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.144"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..2003
                     /gene="ccsA"
                     /locus_tag="KIL20_001528"
     CDS             <1..2003
                     /gene="ccsA"
                     /locus_tag="KIL20_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HBD2721542.1"
                     /translation="ASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQSSYDQDEKG
                     TVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLKHASVIIFIL
                     LLSFGSEKTFAQDLNLTLPVVNTNHAKALATLIVQKSADGRMVPFDTLSREILEKIHQ
                     SDSYKGQNSNAVMLSMLVDVDKWQMEPFILMPQNQAVRDAIANILEIPSTKYISYKDF
                     FDENNRYKLQKYVENANRKNPNARGVFDKEIIKLDERANVVNLVFSGELFKFIPVQNN
                     PNNVWLAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWTRADEGLKFIKEYQE
                     KIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMVVPNLKISFIF
                     KVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGIFFSRKSPIA
                     LSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGFLGLCALLGI
                     FTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGAIWANESWGR
                     YWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIMTYFGVNYFL
                     TGLHSYAAGEAAQIPNYVYWGFALMVVLALFARRKRNFVGKL"
     gene            2019..2468
                     /locus_tag="KIL20_001529"
     CDS             2019..2468
                     /locus_tag="KIL20_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721543.1"
                     /translation="MVIFCAALALLLFLGMIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEATKKKLEFVSA
                     LAANINASAQTVSYLNKELKKISGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(2471..2547)
                     /locus_tag="KIL20_001530"
     tRNA            complement(2471..2547)
                     /locus_tag="KIL20_001530"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2511..2513),aa:Arg,seq:gcg)
     gene            complement(2600..>3126)
                     /locus_tag="KIL20_001531"
     CDS             complement(2600..>3126)
                     /locus_tag="KIL20_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HBD2721544.1"
                     /translation="QSLLEHKEGIILKGGFVKNFYKKSFVLRQKINKNLKQINLLSEA
                     FNLLLSEQTQYKKHLKILNLSISILSKNTKEHLVRVDTLYTLTSAIKNEKMNKSIYLL
                     SILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLYIFSLICCILIVGFIFYHSKKTKE
                     FDLDEGKKAKKQTK"
BASE COUNT         1054 a          383 c          534 g         1155 t
ORIGIN      
        1 cagcttctta tgcaagtgaa attaccgtaa aaaataataa tgaaaatttt gattatagaa
       61 tttttatgaa taatgtttta gattatgatg gctatagatt ttatcaaagt tcttatgatc
      121 aagatgaaaa agggactgtt ttatctgtaa ataaagatcc aggtaaaata ccaacttata
      181 taggttattt tttgctttgt cttggaatgt ttatgaattt tttaaatcca cattctagat
      241 ttagaacttt ggcaagatta attaataaag acactttaaa acatgcaagt gtgattattt
      301 ttattttatt gctatctttt ggttctgaaa agacttttgc tcaagattta aatttgacct
      361 tacctgtggt aaatactaat catgctaaag ctcttgctac tttaatagtt caaaaatcag
      421 cagatggaag aatggtgcct tttgatacgc tatcaagaga aattttagaa aaaattcatc
      481 aaagtgatag ctataagggt caaaattcta acgctgttat gctttccatg ctcgttgatg
      541 tagataaatg gcaaatggaa ccttttattt taatgccaca aaatcaagca gttcgtgatg
      601 ctattgcaaa tattttagaa attcctagca ctaaatatat ttcttataaa gatttctttg
      661 atgagaataa ccgatataaa cttcaaaaat atgttgaaaa tgcaaatcgt aaaaacccaa
      721 atgcaagagg agtttttgat aaggaaatta taaaactaga tgaaagagct aatgttgtaa
      781 atttagtttt tagtggtgaa ttatttaaat ttattcctgt tcaaaataat ccaaataatg
      841 tttggcttgc acctttttct gctgtaacta ctcttaaggg ggatgaaggg catattgttt
      901 tggctttaat acagaattat tttagtgccg tggaaaatgc ttttaaagat ggtaattgga
      961 ctagagctga tgaaggcttg aaatttatca aagaatatca agaaaaaata ggatataaag
     1021 tcatgcctag taaaaccaag gttgaaatgg aaattttttc taataaggct gaaattttcg
     1081 ttaaactcgc tcctgtatat ttaattgcgg gttttttact tttgattctt gttttttcta
     1141 aaatggtcgt accgaattta aaaatctctt ttatatttaa agtggtatat gttttaaatg
     1201 ttttagcttt tgtaattcat acagtaggtc ttggacttcg tgcttattta tcaggtcatg
     1261 ctccatggag taatggctat gaaagtatgg tgtatatagc ttgggcattg tctttgtcgg
     1321 gtatattttt ctctagaaaa agtcctatag ccttgtcatt aacttctatt ttatccggtg
     1381 ttgtattaat ggttgcacat ttaagcgaaa tgaatccgca aattacaaat cttgttcctg
     1441 tgctcaattc ttattggctt agtattcatg tatctgttat tactgctagt tatggatttt
     1501 taggactttg tgccttactt ggtatcttta cactgttctt aatgtgtttt cttaagaaag
     1561 atggaaaata taatcttaat attttgagaa atattacaga ggctacaaga attaatgaaa
     1621 tggcaatgat ttttggactt tgtttgctta ctgtaggaaa ttttttaggt gcaatttggg
     1681 caaatgaaag ttgggggaga tattggagtt gggattctaa ggaaacttgg gctttagtta
     1741 gcattttggt ttatgcagca attttgcatc ttagaatgat tccaaaatat tgtaatcaat
     1801 ttgtgtttgc tttatggagt atgtttgctt attgggttat tattatgact tattttggag
     1861 taaattactt tttaacagga cttcattctt acgctgcagg cgaagcggct caaattccta
     1921 attatgttta ttggggattt gcattgatgg tggttttagc tctttttgca agaaggaagc
     1981 gaaattttgt aggcaaactg taaatgagcc atattttttt ggttattttt tgtgctgctt
     2041 tagcgctttt attgttttta ggcatgattg cttatcttat tacaagtgat ggcaaaaaaa
     2101 caattaaaaa gcaaaaaact agccaaaagc agcatgtagc tgaaaagact aaaaaatttg
     2161 atacagactt agataaaatg ataattgctg cttccgatgt taaactaaca gatattgaat
     2221 taaaagaact tgctaaactt tatgtgcaga cacataaact tggttcaaaa acttctaaag
     2281 aattagatga agcaacaaaa aagaaactag aatttgtttc tgctttggct gcaaatatta
     2341 atgcaagtgc acaaacagta agttacttaa ataaagaact taagaaaatt tctggatctt
     2401 acaaaaaaga aattgatgct tatgagcata tgggattggc taaaagaaaa attaaagaag
     2461 ataaataata tggtgcgctc aagaggattc gaacctctgg ccttttgaac cgcaatcaaa
     2521 tgctctatcc agctgagcta tgagcgcaaa aataagttaa aattatatat aaatattctt
     2581 aaaataagca aaattttgct tattttgttt gttttttagc ttttttacct tcatctaaat
     2641 caaattcttt agtctttttt gaatgataaa atataaaacc tacaatcaaa atacagcaaa
     2701 tcaaagaaaa aatataaagt gtgccataag ggctatcttt gaaaaaaaga ttattagtat
     2761 tcattccaaa aaatcctacg atcaaattta aaggcaagaa aatagaagaa agtatactta
     2821 aaagataaat acttttattc attttttcat ttttaattgc acttgttaat gtataaagag
     2881 tatcaactct tactagatgt tctttggtgt ttttacttaa gatgctgatg gataaattta
     2941 gaatttttaa atgttttttg tattgtgttt gttcgctaag caaaagatta aaagcttcgc
     3001 ttagaagatt aatttgcttt agatttttgt tgattttttg tcttaacaca aaggattttt
     3061 tgtaaaaatt tttaacaaaa ccacctttta agataatacc ttctttgtgt tctaaaaggc
     3121 tttgaa
//
LOCUS       DAEBKH010000144         3105 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.145, whole genome shotgun sequence.
ACCESSION   DAEBKH010000144 DAEBKH010000000
VERSION     DAEBKH010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3105)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3105)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3105
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.145"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..1465
                     /locus_tag="KIL20_001532"
     CDS             <1..1465
                     /locus_tag="KIL20_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HBD2721545.1"
                     /translation="FSRIYFLELMSHYYERFHKDILGLNKKLAENFKNSIVSHGNDPL
                     DALQGIEQFVYNLPQMITHPSYKELLSKRKDISDTAIIVSTGPSLTKQLPLLKKYANK
                     ATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDIIFVCAGVVHPK
                     AIEYLKGRNLVITQKVLAFPYYINLKDFSYAAVGLSVAHTLSYLATYLNHKNIIFIGQ
                     DLAYAENGNSHPDDYQNSATYESQMYEHILTTAYGGNGKVETHSIWLLFKNWFENEMI
                     PNTRKMDITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEF
                     LLKAYYKVYQSIKHCRDFNDNFIKVYNKIKNSFMSLQNSQKNEIFIQEIIQDIDKTKT
                     QIDELYNTQKDLMQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMEL
                     VYGHIKAQENALIKNILPLEEKIKERKLDKWMERVRR"
     gene            1462..>3105
                     /locus_tag="KIL20_001533"
     CDS             1462..>3105
                     /locus_tag="KIL20_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HBD2721546.1"
                     /translation="MREELFLKNTQALFEVDEFLACTLRSLKCLTFALIQDENGINFK
                     KDDIFLYENPNKELLENLTLFKTEYNKYPVLFFYGFGNGMFYKTLCKNKQHKHIIIFE
                     DNLEILTLAFHLFDFSEELKKEQLILFYTPNINTAQLTTLFTYEIIQKSVKIFNLFIH
                     NDFYQQFYSTQIQNINTQLIEMIRFIVLNKGNDPHDSLVGIKHTLDNLPKMLNHGIFQ
                     EFLKERRAKVENAIIVSTGPSLIKQLPLLKKYTNKATIFCADSAYVILGKYGIKPDYV
                     CMLERDDIVSKCFDNDFGEFNKNILFILASVVHKEVLDFLEKDQRTYMLVHRPLNFAA
                     SLKLDEYGYLGVGHSVSNMIYELAGALRFENIIFIGQDLAYGEDGSSHPKEHIHGSQG
                     EEIRGEKYTLAYGGKGKVRTQLTWNLFRQAFEKDIFWAKEKLNITTYNCTEGGARIEG
                     TIEKPFLWACENLLDKNLNKPFDFPKFLDKKLAKEKLEKIKKYLQKSILESKEFIKKT
                     QTQLQKLRYTLEKNDKNFQTLGKIKNDLLNLFKEFKKLKL"
BASE COUNT         1209 a          404 c          447 g         1045 t
ORIGIN      
        1 attttctaga atttattttt tagaactgat gagtcattat tatgaaagat ttcataaaga
       61 tattttagga ttgaataaaa aattagcaga aaattttaaa aattctattg tttctcatgg
      121 caatgatccc cttgatgctc ttcaaggtat agaacaattt gtttataatc ttcctcaaat
      181 gattacccat cctagttata aagaattact ttctaaaaga aaggatataa gtgatacagc
      241 tatcattgtt tctacaggac catctcttac taaacaactt cctttgttaa aaaaatatgc
      301 caataaagct acaatttttt gtgcggattc ttcttatcct attttagcta aacatggtat
      361 aaaacctgat tatgtttgta tgttggaaag aacagaaatt actgctgagt tttttaatca
      421 tgattttggg gaatttgata aggatattat atttgtttgc gcaggggttg ttcatccaaa
      481 ggcgattgag tatttaaagg gtagaaattt agtcataact caaaaagttc ttgcttttcc
      541 atattatata aatcttaaag atttttctta tgctgctgta ggacttagtg ttgcacatac
      601 attatcttat ctagcaactt atctaaatca taaaaacatc atttttatag gacaggattt
      661 agcttatgct gaaaatggca attctcatcc tgatgattat caaaactcag ccacctatga
      721 aagtcaaatg tatgaacata ttttaactac agcttatgga ggaaatggaa aagttgaaac
      781 tcatagtata tggcttttat ttaaaaattg gtttgaaaat gaaatgattc caaatactag
      841 aaaaatggat atcaccacct acaactgcac cgaaggtgga gcaaggatag aaggaaccat
      901 agaaaaacct tttttatggg cttgtgagaa tttacttgat aaagatttaa ataaaccttt
      961 tgaaaaatta gaacctttaa gtttaaataa acaaaatgaa tttttactta aggcttatta
     1021 taaagtttat caaagtatta aacattgtag agattttaac gataatttta ttaaagttta
     1081 taataaaata aaaaactctt ttatgagttt acaaaattct caaaaaaatg aaatttttat
     1141 tcaagaaatt attcaagata tagataaaac caaaactcaa atagatgaac tttacaatac
     1201 tcaaaaagat ttgatgcaaa ttttaggtcc cttactaact caatttgaac ttaatcttgc
     1261 tagaatttat gtcttaaatc ctaaaaccaa agaagatgct tttaataaaa gtattctttg
     1321 gataaaagaa catttagaat ttatggaatt agtttatgga catattaaag cacaagaaaa
     1381 tgctttgatt aaaaatatac ttcctttaga agaaaaaatt aaagaaagaa aattagataa
     1441 atggatggaa agggtgagaa ggtgagagag gaactttttt taaaaaatac tcaagctttg
     1501 tttgaggtcg atgagttttt agcttgtaca ctgagatcac ttaaatgctt aacttttgca
     1561 cttatccaag atgaaaatgg aataaatttt aaaaaagatg atatttttct ttatgaaaat
     1621 cccaataaag agcttttaga aaaccttact ctgtttaaaa ccgaatataa caaatatcct
     1681 gttttgtttt tttatggctt tggaaatgga atgttttata aaactttatg taaaaacaaa
     1741 caacataaac acattatcat ttttgaagac aatcttgaaa ttttaacttt agcttttcat
     1801 ttatttgatt ttagcgaaga attaaaaaaa gaacaactaa tactttttta tactccaaat
     1861 attaatacag cacaactcac cacacttttt acttatgaaa tcattcaaaa aagtgtaaaa
     1921 atttttaatc tttttatcca taatgatttt tatcaacaat tttatagcac tcaaatacaa
     1981 aatataaata ctcaactgat agaaatgata cgatttatcg ttttaaacaa aggtaatgat
     2041 ccacatgatt ctttagttgg aatcaaacat actctagata atctccctaa aatgttaaat
     2101 catggaattt ttcaagaatt tctcaaagaa agaagagcta aggttgaaaa tgctatcatt
     2161 gtttctacag gaccaagtct tataaaacaa cttcctttat taaaaaagta tactaataaa
     2221 gctacgattt tttgtgcaga tagtgcttat gttatccttg gaaaatacgg tataaagcct
     2281 gattatgttt gcatgctaga gcgtgatgat atagtttcta aatgttttga taatgatttt
     2341 ggtgaattta ataaaaacat tctttttata cttgcttctg tagttcataa agaagtatta
     2401 gattttttag aaaaagatca aagaacttat atgcttgtac atcgcccttt aaattttgca
     2461 gctagtttaa aacttgatga atacggatat cttggagtag gacacagtgt ttcaaatatg
     2521 atctatgaac tagccggagc cttaagattt gaaaatatca tttttatagg acaggattta
     2581 gcttatggcg aggatggaag ttcacatcct aaagagcata tacatggaag tcaaggtgaa
     2641 gaaatcagag gagaaaaata tacactagct tatggaggaa aaggcaaagt aagaactcaa
     2701 ctcacttgga atttatttcg tcaagctttt gaaaaagata tattttgggc aaaagaaaaa
     2761 ctcaatatca ccacctacaa ctgcaccgaa ggtggagcaa ggatagaagg aaccatagaa
     2821 aaaccttttt tatgggcttg tgagaattta cttgataaaa atttaaataa accttttgat
     2881 tttccaaaat ttctagataa aaaactagcc aaagaaaaat tagaaaaaat aaaaaaatat
     2941 ctccaaaaaa gcattttaga atctaaagaa tttataaaaa aaactcaaac tcagcttcaa
     3001 aagcttagat acactttaga aaaaaatgac aagaattttc aaactcttgg aaaaatcaaa
     3061 aatgatcttt taaatctttt taaagaattt aaaaaactca agctt
//
LOCUS       DAEBKH010000145         3100 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.146, whole genome shotgun sequence.
ACCESSION   DAEBKH010000145 DAEBKH010000000
VERSION     DAEBKH010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3100
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.146"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(168..872)
                     /locus_tag="KIL20_001534"
     CDS             complement(168..872)
                     /locus_tag="KIL20_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721547.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANATKMEFEA
                     RAEAMKLKAEEAKEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNFVART
                     YQQNSQNNDIKFNIAS"
     gene            979..1341
                     /locus_tag="KIL20_001535"
     CDS             979..1341
                     /locus_tag="KIL20_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HBD2721548.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIFTKEIYKEFSDCPLELQKELFE
                     KILLCEKAMIEFYKPEKINIASFANYVPRVHFHVMARFKEDAFFPECMWGKQQREAIK
                     LDLPKFEEFVKFLNSKIF"
     gene            1415..1987
                     /locus_tag="KIL20_001536"
     CDS             1415..1987
                     /locus_tag="KIL20_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HBD2721549.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDATIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDTEIGGVVKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
     gene            complement(1992..2948)
                     /locus_tag="KIL20_001537"
     CDS             complement(1992..2948)
                     /locus_tag="KIL20_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721550.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSRIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCLGKHHALILSKKNIASITTLIFIGVLSIILPRNT
                     TFNSAGLEFHFITLNFFKPVSELGFLFFLVGLILIFIKIFKTKEYYLIIAFFAAYFQF
                     LFQEGAGIRYFEFASLVFCFYLLNHAYKLAFFDILTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYAKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(3009..>3100)
                     /locus_tag="KIL20_001538"
     CDS             complement(3009..>3100)
                     /locus_tag="KIL20_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HBD2721551.1"
                     /translation="DELLENSKKTHEELLHIEQTIQDEIAKFK"
BASE COUNT         1112 a          385 c          475 g         1128 t
ORIGIN      
        1 gaagatacaa aaaaagtaga agccaaaaaa gaagagcaaa gtaattctac aaatacagat
       61 aaagcagata ataaaaaaga taaattttta gacatgtccg tttagcttta aaaaagcttt
      121 atttataagg aagattggcg taaatttttt atttaaatct aagaatttta agatgcgata
      181 ttgaatttaa tgtcgttatt ttgcgagttt tgttgataag ttctagcgac aaaattttta
      241 aagtctttat caaaatttga atttttatcg ttgttttttg aatctttatc tgttttttct
      301 aagctatttt ctgaattttt gtcatctttt tctttatttt cttcttcttt ttctttggct
      361 tcttcggctt taagtttcat tgcttcagct cttgcttcaa attccatttt tgtagcattt
      421 gctgcaactt tatagtcttg tgggctagga tcagcaggag ccatagctgc tgctgcgatt
      481 tgtcttgcat tggctatagt ttcttctggt gtgtttcctt tttgcatgct gataggaact
      541 tcgcccgctg tagcatacat ttgattatca gggcctcttg tgtaagtaaa acttgcagca
      601 cctgctaagc cgccgcccgc tgcttgatgt gcagcttcat gagcttttac atttctatcg
      661 atactttgga gttcgcgaac ttgagctact tctttttggc ttagctctac gccattaacc
      721 atttgggttt gttcgccatt tttttcttta tcatctttat tttcgctaag atttttttca
      781 tctttttgag tggaatcaga ttgatttgtt ttatcaaaag aaggtttgct agagtagtaa
      841 tcataagagt tataacttga actaatttgc atttatcctc ctttttgttt tttaaatttt
      901 aggaatttta acgcattttg acttaaaaat ttgataaatt ttgtaaaata atcataaata
      961 caatttcaaa ggaatgtaat gatttatgaa aatgatttga tttatataga gaaagaggag
     1021 gctcaagtgc cttggcttaa aatttttact aaagaaattt ataaagaatt tagcgattgt
     1081 cctttagagt tgcaaaaaga actttttgaa aaaattttac tttgtgaaaa ggctatgata
     1141 gaattttaca aacctgaaaa aatcaatatc gcctcttttg caaattatgt gccaagggtg
     1201 cattttcatg ttatggcaag atttaaagaa gatgcgtttt ttccagagtg tatgtgggga
     1261 aaacagcaaa gagaagcaat aaagcttgat ttgcctaaat ttgaagaatt tgtaaaattt
     1321 ttaaatagta aaatttttta atttttatta atgatttgtt atgttttatc taataaaatt
     1381 tttatattga aaattactat aaaaaaggaa aaaaatgaaa aaagttttat taagttcatt
     1441 ggttgcggtg tctttgttaa gtacaggttt gtttgctaaa gaatatactt tagataaagc
     1501 acatacagat gtaggtttta aaatcaaaca tttacaaatt agcaatgtaa aaggaaattt
     1561 caaagattat tctgcggtga ttgattttga ccctgcgagt gctgaattta aaaagcttga
     1621 tgcaactata aaaatcgcat ctgtaaatac agaaaatcaa acaagagata atcacttaca
     1681 gcaagatgat tttttcaaag caaaaaaata tcctgatatg acttttacaa tgaaaaaata
     1741 tgaaaaaatc gataatgaaa aaggtaaaat gacaggaact ttaactatag ctggagtttc
     1801 taaagatatc gttttagata ctgaaatcgg cggtgtagtt aaaggcaaag atggaaaaga
     1861 aaaaataggc ttttctttaa atggaaaaat caaacgctct gattttaaat ttgcgacaag
     1921 tacttcaact attactttaa gtgatgatat taatttaaat atcgaagttg aagcaaacga
     1981 aaaataattt tttagtctaa gagtcttgct cttagacttt gtaaattttt atccaaattt
     2041 tcttcacttt cttgccaaat caatttaaaa tccggtttaa aattttcatt ttctaaatta
     2101 aattccgtgt ttttcaaggt ggattctaaa aaagcaagat gatttaaagc ttgatttttg
     2161 tcattaaaaa ttaaaataaa atcattttct acgataaaaa tttttgctct aaagcgtttt
     2221 aaaatttttg caatttgttt taaaatgagt ttggcatagc tttctttagt gtcttttagt
     2281 tcattaaaat ggagcaaggc aatgatatag ttgttttttc cctttgtaaa gcgtgtaagg
     2341 cttttttcat taggtagctt tgttaagatg tcaaaaaaag ccaatttata agcgtgattt
     2401 aaaagataaa aacaaaaaac taaacttgca aattcaaaat accttattcc tgctccttct
     2461 tgaaataaaa actgaaaata tgcagcaaaa aatgcgataa taagataata ttctttagtt
     2521 ttaaagattt tgataaaaat gagtattaag ccgactaaaa aaaataaaaa tcctaattca
     2581 ctcacaggtt taaaaaaatt taatgtaata aaatggaatt ctaaaccagc actattaaaa
     2641 gtagtatttc taggtaaaat gatgcttaaa acgcctataa aaataagggt tgtaattgaa
     2701 gcgatatttt ttttacttaa aattaaagca tgatgttttc caaggcaaaa tagagtaaaa
     2761 atcataggta aaaacaaagc cacaaataaa ttagcttgaa aaaaacttgt ataaaaataa
     2821 ggcaacttag ctcctaatag cactaaagtc aaaaagaaaa ttcttgaatt tttaaagtaa
     2881 aaggatagca caagtgctga aatttcaaaa ataaaactca atgatattaa aaaatctaat
     2941 aaaaacattt caaatccttg attttaataa aagtgataat tgtatagaaa aaagcttaaa
     3001 agtggacttt atttaaattt agcaatctca tcttgtatag tttgttctat atgaagtaat
     3061 tcttcatgag tttttttact attttctaaa agttcatcaa
//
LOCUS       DAEBKH010000146         3090 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.147, whole genome shotgun sequence.
ACCESSION   DAEBKH010000146 DAEBKH010000000
VERSION     DAEBKH010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3090
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.147"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            78..645
                     /locus_tag="KIL20_001539"
                     /pseudo
     CDS             78..645
                     /locus_tag="KIL20_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
     gene            621..773
                     /locus_tag="KIL20_001540"
     CDS             621..773
                     /locus_tag="KIL20_001540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HBD2721552.1"
                     /translation="MQEYTFALKIGEDYLISPMEINPDKTLFSYCDIESAQELSLLKK
                     QILLKP"
     gene            935..1747
                     /locus_tag="KIL20_001541"
     CDS             935..1747
                     /locus_tag="KIL20_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HBD2721553.1"
                     /translation="MGIAKSLVAIFFYEVENFNDFKPRYLKTFIQKYSDFKYYYLNIR
                     AQKLEMTNEINKIILNQLKQNTSEIDKNTSIFKEIFEELENIRRSLTTISESFTNFTN
                     YLEYNLYQSEEKMNLEKEVQSSLKNIDQLNSILDLISGIAEQTSLLSLNAGIDAARAG
                     KLGRGFAVIADEVRKLSENTQMGLGEMEGAIKLVIQTIQSIAKSSNSSTQEMNFIRDK
                     SNEFSKIISNLINSGKEISDKLKQRSNVGEDFEKNVNQLKCYEDVLAKLNQY"
     gene            complement(1802..2155)
                     /gene="rplT"
                     /locus_tag="KIL20_001542"
     CDS             complement(1802..2155)
                     /gene="rplT"
                     /locus_tag="KIL20_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HBD2721554.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     SAAFAKIAEAAKKAL"
     gene            complement(2249..2440)
                     /gene="rpmI"
                     /locus_tag="KIL20_001543"
     CDS             complement(2249..2440)
                     /gene="rpmI"
                     /locus_tag="KIL20_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HBD2721555.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            2595..>3090
                     /locus_tag="KIL20_001544"
     CDS             2595..>3090
                     /locus_tag="KIL20_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721556.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQEGNENSLEQ
                     LSYIFNNTTYASEFGFRINEEGFFDKDLNKIANIPESYDINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLGQIS
                     RIYNN"
BASE COUNT         1178 a          448 c          421 g         1043 t
ORIGIN      
        1 ctgatttatt gtgcaatctt gattctaact caaacattga aaacagtcct tataaacaaa
       61 atatccaagg aataagcttg atgcttttta gcgaagatat gatagaaaat ctctgcacaa
      121 ataaaatcaa gctttttagc aatataaaag attatacaga aagaaaaaaa ctgatagaaa
      181 aagaagtttt atctataaat ataccttttg aagcacactg cacaaatact ttgcattatt
      241 taatttatga tggtttaagt caaagcgaaa gttctctttt agaactttta tacaaacaca
      301 acccctatcc ttgtgcttta gtaggaggtg gatctagtgg aaatatggac tttagcggaa
      361 catttatatt ttataacgga gaaatattaa aaaatcaagc tttaagcata catgtccaat
      421 ttaaatctaa atatcgtttt gatttaatga aatctcaaaa ttttaatcct caaagcaaca
      481 ttacctttac catacttgat gcaagcttat atgataggac ggtacgtgaa tttattgata
      541 aaaaaacctt tcaatccatc aacgcggttg aagctttatg caattatttt aactgtactt
      601 ttgaagaact taaaaataaa atgcaagaat atacttttgc tttaaaaatt ggagaagact
      661 atcttatttc ccctatggaa atcaacccag ataaaacatt atttagttat tgtgatatag
      721 aaagcgctca agaattaagc ttgcttaaaa aacaaatttt attgaagcca taaaaaaaga
      781 ttacgaaaaa ttttctctta ataaaccaaa accactagga gcaattttta atgattgtat
      841 cttaagaaga cttcaaaaca aagaacattt aaatcaaatc cattttaatg attttcctat
      901 agttggtttt tctagttttg gggaaattta tggagtggga attgcaaaaa gtttagtggc
      961 aatatttttt tatgaagttg aaaattttaa tgatttcaaa cctagatatt taaaaacttt
     1021 catacaaaaa tacagcgatt ttaaatacta ttatcttaat ataagagctc aaaaactaga
     1081 aatgacaaat gagattaata aaataatttt aaatcaactc aaacaaaata catcagaaat
     1141 tgataaaaat acaagtatat ttaaagaaat ttttgaagaa cttgaaaata taagaagaag
     1201 tcttacaacc attagtgaaa gttttaccaa tttcactaac tacctagaat acaaccttta
     1261 ccaaagtgaa gaaaaaatga atttagaaaa agaagtgcaa tcttctttga aaaatataga
     1321 tcaattaaat agtattttag atcttatttc agggattgct gaacaaacta gccttttatc
     1381 tttaaatgca ggtatagatg ctgctagagc tggaaaactt ggtcgtggat ttgcagttat
     1441 agctgatgaa gttagaaaac tttcagaaaa tacccaaatg ggtctaggtg aaatggaagg
     1501 agctattaaa ttagttattc agaccataca atccattgca aaaagttcca attctagtac
     1561 tcaagaaatg aattttataa gggataaatc caatgaattt tccaaaatca tttcaaatct
     1621 tataaattca ggtaaagaaa tttcagataa attaaaacaa agaagcaatg tcggcgaaga
     1681 ttttgaaaaa aatgtaaatc aactcaaatg ttatgaagat gttctagcta aattaaatca
     1741 atactaaaaa attaagaatt tcaagaaatc aaaaatcttg aaattcttac actaaaaaaa
     1801 attaaagtgc tttttttgcg gcctctgcaa tttttgcaaa agcagcagaa tcattcatag
     1861 ctaaatctgc tagaattttt ctatcaagtt caatacctgc ttttttaaga ccattgataa
     1921 atcttgaata acttaaatca ttaagcctac aagcagcatt gatacgcaca atccaaagac
     1981 gacggaagtc tctttttttg cggcgtctat cacgataagc atagactaga cttctttcta
     2041 attgttcttt tgcttttcta aaatgtttgc ggcgtccact ataaaaacca cgcgctaatt
     2101 ttaaaacttt tttatgtctg cggcgtctaa caacacctgt ttttactctt gccattttta
     2161 tttcctttca taaagtggcg tccaaatttg gagcttgccc ttgaaatttt atctcagagg
     2221 ggagtttgaa tgacttttag tcaaaaactt aaattcctag cattttttca acagctttta
     2281 catttgtgct atgcacatat ttagctgtgc gaagatcacg cattcttttt gcaggttttt
     2341 tagtcaaaat atgacttcta aaagctgagc ctcttttgat tttattttta cctactttga
     2401 agcgtttaac tgcgctttta acgcttttca tctttggcat acgctttcct tatttagata
     2461 aatttttatt tttcaaatta aaagaaaagc taaatactat caaatttttt ctaatttttg
     2521 actgaattta atttttaaaa aacttggcac accttttgct tataaaaaat agcaatattt
     2581 tggaaagatt taaaatgact ataaattcgg caaatccata tcaaaattta accttatcta
     2641 atcctttgca gaatagctct gctctaaatt tgattaaaga tagcaaagct ttggatcaag
     2701 aaggaaatga aaatagctta gaacaattaa gttatatttt taataatacc acttatgcta
     2761 gtgaatttgg atttagaatc aatgaagaag gtttttttga taaagattta aataaaattg
     2821 caaatatacc agaatcttat gatatcaaca ttaaaagtgt tagaagcata gcaaaagaac
     2881 tcgcaaaaca agatgaaaat ttaaactaca ataaaattga tctaccttat cttttaaata
     2941 gctatcatag ttcattaaaa tctataaatt cagaattttt acaagatgat aatgcttatt
     3001 taagtcgcga tcttatttca aaactatcat caggtttttc aacagataat ggagaatttt
     3061 taggccaaat ttcaagaatt tacaacaatc
//
LOCUS       DAEBKH010000147         3077 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.148, whole genome shotgun sequence.
ACCESSION   DAEBKH010000147 DAEBKH010000000
VERSION     DAEBKH010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3077
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.148"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..>3077
                     /locus_tag="KIL20_001545"
     CDS             <1..>3077
                     /locus_tag="KIL20_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
                     /protein_id="HBD2721557.1"
                     /translation="FSLKFIIITDFYKFYIFKISEFEELFYKNPSFKKLFEEFCNPNS
                     LFKGNTEEFYKEVAKLIENSKENLKGFLIDLTFLKDKQKSNFKNLASIYKTFHRDFLL
                     SEFNPNDANSLNNAFYKELLYILGLCESKQNSKLIIAKSEESKEEQGTFYTTINSKLK
                     EENFETILKLLILWLNRILFLKLIESNLVRFNDDKNLKFLNFKKIPDFDKLSELFFEV
                     LAKEKSTRKKSEFAYLPYLNSSLFEKQSIENTLEISSLSNDLKLFYYKNTVLKDDKCK
                     AKKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVLGNVFEKLNGYKEGSFY
                     TPSFITSYMCKESITKVVLDKFNAQFDLDAKDISELRKSLRKEDKKAQKELLNSIKIC
                     DPAVGSGHFLVSALNVMLSIYDELNLFDEEFYLEVQNDEILITGRKGEFIEYKRPSTP
                     KDKAHLIQQELFHTKKDIIENNLFGVDINPNSCEITKLRLWIELLKHSFYQSFDDENY
                     HDLKTLPNIDINIKCGNSLVSYFETGKSLNHYPNIKERMGKYKRIVKDYKEGFYTDKS
                     HINQEIKNLKISFKNFCFADKFKKEMKSFNDKCEKYSKKYGNFLAVDDENLKFFVSAN
                     LTLFDFDEKEATKEFVNLKKEYDNIFNLESNHPFEWRFEFPEILDDDGNFKGFDLIIG
                     NPPYIRQEELKELKPHLAKNYKVYKGTSDIYTYFYELGFNVLKDNGVLSYITSNKYTR
                     AGYGEALREFLLKNVKVLEYTDLNGIKVFDSATVDTSILCFEKSKSKDNKFKYLALSN
                     EILKTCAYDIGLYKDFAEFSQNSLSKESFTFSDENTSALKAKIERIGTPLKEWQGLNI
                     YRGILTGYNEAFIITTEKRNEILANCKDEAEKERTAKLIRKMLRGRDIKRYSYEWAGL
                     WVIGTFPSLKLDIEQYPALKQYLSQFLPRIEQSGEKGCRKKTSNKWFETQDNIAYYEE
                     FEKEKIVWNRISSDLCFSYDNQKNFILDSMFSITFYSNINLKYLIANLNSSIS"
BASE COUNT         1191 a          447 c          496 g          943 t
ORIGIN      
        1 gttttagctt aaaatttatt atcatcacag atttttataa attttacatt tttaaaatta
       61 gtgagtttga agagcttttt tataaaaatc caagttttaa aaaacttttt gaagaatttt
      121 gtaatccaaa ttcacttttc aaaggtaata ctgaagaatt ctataaagaa gtagccaaac
      181 tcatagaaaa ttccaaagaa aacttaaaag gctttttgat tgacttgacg tttttaaaag
      241 acaaacaaaa atcaaatttt aaaaacctag caagtattta taaaactttt catagagact
      301 ttttgctaag tgagtttaac cccaacgatg caaattcact caacaatgct ttttacaaag
      361 agcttttata tatcttaggg ctttgcgaga gcaaacaaaa ctcaaaactc atcatcgcaa
      421 aaagtgaaga aagcaaagaa gagcaaggca ctttctacac cactataaat tctaagctta
      481 aagaagaaaa ttttgaaacc atcttaaaac ttttgatctt atggcttaat cgcattttgt
      541 ttttaaagct tatagagtca aatttggtgc gttttaatga tgataaaaat ttgaaatttt
      601 taaattttaa aaaaatcccc gattttgaca agcttagcga acttttcttt gaagttttag
      661 ccaaagaaaa aagcacgcga aagaaaagcg aatttgctta tctgccttat ttaaattctt
      721 ctttgtttga aaaacaaagc atagaaaaca cacttgaaat ttcaagctta agcaatgact
      781 taaagctttt ttactataaa aacaccgtgc taaaagatga taaatgcaag gctaaaaaag
      841 gacaagtggg gcttttggag tatttgtttg aatttttaga tagttttgat tttggtagcg
      901 atgatgagca aagcgaaatt ttaagccaaa aagaactcat aagttcaagt gttttaggaa
      961 atgtgtttga aaaactcaat ggctacaaag aaggaagttt ttacacgcca agctttatca
     1021 cttcttatat gtgcaaagaa agcatcacaa aagttgtact tgataaattc aacgctcaat
     1081 ttgatcttga tgctaaagat ataagtgaac taagaaagtc tttaagaaaa gaagacaaaa
     1141 aagcacaaaa agagctttta aactctataa aaatttgcga tcctgcggtg ggaagtgggc
     1201 attttttggt ttctgcttta aatgttatgc tgagtatcta tgatgagcta aatctttttg
     1261 atgaagaatt ttatctagaa gtgcaaaacg atgaaattct catcacgggt agaaaaggcg
     1321 agtttataga gtataaacgc ccaagcacgc ctaaagataa agcccatctt atccagcaag
     1381 aactttttca taccaaaaaa gacatcatag aaaacaacct ttttggagtc gatatcaacc
     1441 ctaactcatg cgagatcacc aagctaaggc tttggataga gcttttaaaa cacagttttt
     1501 atcaaagctt tgatgatgaa aattatcacg atcttaaaac attgccaaac atcgatataa
     1561 acataaaatg cggaaattct ttggtatctt actttgaaac aggcaaaagc ctaaaccact
     1621 atcctaacat caaagaacgt atgggcaaat acaaacgcat agtaaaagac tataaagaag
     1681 gcttttacac ggataaaagc cacatcaacc aagagataaa aaatctcaaa atttctttta
     1741 aaaatttctg ttttgcagat aaatttaaaa aagaaatgaa aagctttaac gataaatgtg
     1801 aaaaatactc taaaaaatac ggaaatttct tagccgtaga tgatgaaaat ttgaaattct
     1861 ttgttagtgc gaatttgact ctttttgact ttgatgaaaa agaagccaca aaagaatttg
     1921 taaatctaaa aaaagaatac gacaatatct tcaatctaga aagcaatcat ccttttgaat
     1981 ggcgttttga attccctgaa attttagacg atgatggaaa tttcaaaggc tttgatctca
     2041 tcatcggcaa tccgccttat ataagacaag aagagcttaa agaactcaag ccccatttag
     2101 ctaaaaatta taaggtttat aaaggcacga gcgatattta tacttatttt tatgaactag
     2161 gatttaatgt tttaaaagat aatggggtat tgagctatat cacttctaac aaatacacgc
     2221 gtgcaggata tggggaagct ttgcgtgaat ttttgcttaa aaatgttaag gttttagaat
     2281 acactgattt aaacggcata aaagtttttg atagtgctac agtggatact tccatacttt
     2341 gttttgaaaa atcaaaaagc aaagataata aattcaaata ccttgctcta agcaatgaaa
     2401 ttttaaaaac ttgtgcttat gacattggct tatataagga ctttgcagaa ttttcgcaaa
     2461 attctttaag caaagaaagc ttcactttta gcgatgagaa tactagtgct ttaaaggcca
     2521 agatagaacg aataggaact ccgcttaaag aatggcaagg acttaatata tatcgtggaa
     2581 ttttaacagg ctataacgaa gcctttatca tcactactga aaaaagaaat gaaattttag
     2641 caaattgcaa agatgaagcc gaaaaagaac gcaccgccaa actcatacgc aaaatgctac
     2701 gcggacgcga tataaaaaga tatagttacg agtgggcggg actttgggtg ataggaactt
     2761 ttccaagttt aaaactcgat atagaacaat atcccgcatt aaaacaatat ttatctcaat
     2821 ttttaccacg catagaacaa agcggagaaa aaggttgtag aaagaaaact agcaataaat
     2881 ggtttgaaac tcaagacaat atcgcttatt atgaagaatt tgaaaaggaa aagatagttt
     2941 ggaatagaat ttcaagtgat ttatgctttt cttatgataa tcaaaagaat tttattttgg
     3001 attctatgtt ttctataact ttttattcta atataaattt aaaatattta atagcaaatt
     3061 taaattctag tatttca
//
LOCUS       DAEBKH010000148         2897 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.149, whole genome shotgun sequence.
ACCESSION   DAEBKH010000148 DAEBKH010000000
VERSION     DAEBKH010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2897
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.149"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..330
                     /locus_tag="KIL20_001546"
     CDS             <1..330
                     /locus_tag="KIL20_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721558.1"
                     /translation="YDLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIID
                     ANDLDNWFPKIFFLDKNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRG
                     LKITLKK"
     gene            342..1544
                     /locus_tag="KIL20_001547"
     CDS             342..1544
                     /locus_tag="KIL20_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HBD2721559.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            1548..2795
                     /locus_tag="KIL20_001548"
     CDS             1548..2795
                     /locus_tag="KIL20_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HBD2721560.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVEEILNADVDVFVELMGGVDEAFKIVNEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFEQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYELLSKDEIYT
                     KYYLRVKVEDKIGVLSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
BASE COUNT         1073 a          365 c          541 g          918 t
ORIGIN      
        1 tatgatttaa atttttccaa tgctgtatta aaaaccaata caaatgttaa tttaaatact
       61 ccaaaatcat tagaaaagcc ccttaaagac tatgtgcttg atttaaaaaa tgctacaaat
      121 ttgattattg atgcaaatga tttagacaat tggtttccta aaatcttctt tttagataaa
      181 aatctaaatc taattaaagc agtaaaaagc gaaaataaaa ataatcattt ttcagaactt
      241 attccaaatg gtgctatata tgctattgta agcgatatgt atagtttaga taatatacgt
      301 aggggtttaa aaatcacact taaaaaataa aggattaaga aatgtttgat gaaatccgtt
      361 ttaataccat agaaagactt ccaaattatg ttttcgcaga ggtaaatgcg ataaaaatgg
      421 cagcaagacg tgctggagag gatatcatcg acttttcaat gggaaatccc gatggtaaaa
      481 ctccacaaca cattatagat aaactttgtg aaagtgctaa caaagataaa acctcgggat
      541 attctacttc catggggatt tataaacttc gcttagcaat ttgtaattgg tataaaagaa
      601 aatataatgt taatctagat cctgaaaatg aagttgtagc taccatgggt tcaaaagagg
      661 gttttgtaaa tcttgcaaga gcgattataa atcctggaga tgttgctatt gtaccaactc
      721 ctgcttatcc tatacatact caagctttta ttatagcagg aggtaatgta gcaaaaatgc
      781 ctttagctta taatgaaaaa tttgagcttg atgaaaatca attttttgaa aatttgcata
      841 aaactttaaa tgaaagcatc ccgcgtccaa aatatgtcgt tgttaatttc ccgcataatc
      901 caacaacagt aacttgtgag aaaagttttt atgaaagatt gatagcaacg gcaaaaaaag
      961 aaagatttta tattatttca gatattgctt atgcagattt aacttatgat gactataaaa
     1021 ctccttctat tttggaaatt gaaggcgcaa aagatgtagc ggtagaaact tacactcttt
     1081 caaaatctta caatatggca ggctggcgtg taggttttgt agtaggaaat aaacgcttag
     1141 tcagtgcgct taaaaaaata aaatcttggt ttgattatgg tatgtacaca cctattcaag
     1201 tagcagctac catagcttta gatggagatc aaacttgtgt ggatgaaatc cgtgcaactt
     1261 atgataaaag aatgcacatt ttacttgaag cttttgaaaa tgcaggctgg aaacttcaaa
     1321 aaccaagagc aagtatgttt gtttgggcaa aactccctga aagcaaaaga catttaaaaa
     1381 gtttagaatt ttcaaagcaa cttttacaac gtgctagtgt tgcagtaagt cctggggtag
     1441 gttttggcga agcaggtgat gagtatgtaa gaattgcttt aattgaaaat gaaaatcgca
     1501 tacgccaagc tgcacgcaat atcaaaaaat atttaaaaga ataagttatg aaagtagcga
     1561 ttcttggtta tggcactgtt ggaagtgcgg tggttaaatt tcttttagaa aatgataaac
     1621 tcattcgtgc aagatgtgga caaagtatca ctcctgtgat cgctcttgct agaagtccta
     1681 aaaaaaatgc tttaattcca attactcaca gtgttgaaga aattttaaat gctgatgtag
     1741 atgtttttgt agaattaatg ggtggggtgg atgaagcttt taaaatagtg aatgaaattt
     1801 taaaaaagaa aaaagctgtt gttactgcaa ataaagctat gcttgcttat catcgttatg
     1861 agcttgaaaa tttggctaaa aatttagctt ttggttatga agcaagtgta gctggaggaa
     1921 ttcctattat caaggtttta aaagaaggtt taagtgcaaa taatattttg gctataaaag
     1981 ggattttaaa tggtacgagt aattatattt taagttctat gagtcaaaaa aatatgagtt
     2041 ttgaacaagc cttacaaata gctcaaaatt taggttatgc agaggctgat ccaacttttg
     2101 acatagaagg gcaagatgca gcacataaac tacttgtttt atcaagtatc gcttataatc
     2161 ttaaagctaa acctgaagat attttgatcg agggtattag tgaaattgca cctgaagata
     2221 tgtattttgc taatgagttt gaatttacca taaaactttt aggtatagct aaggtgcgtg
     2281 aaaataaagt agaattaaga gtgcatccta ctatgataga taaagaaaaa atgcttgcaa
     2341 aagttgatgg agtgatgaat gctataagca ttaatggaga tttgttgggt gaaagtttgt
     2401 attatggagc aggagcagga ggagaggcca ctgcaagtgc tgtgatttca gatcttatgg
     2461 atatagcaag agatcaggta aaagcaccaa tgcttggttt tgtgaatact ttagaatacg
     2521 agcttttaag caaagatgaa atttatacaa aatattattt aagggtgaaa gttgaagata
     2581 aaataggggt tttatctaaa atcacacaat tgatgagtga aaataatatt tctatcgata
     2641 gttttttaca aaaacctaaa aaaaatgatg aaaattacag tactttgttt tttactacac
     2701 atttaactta tgaaaaaagc atacaaaatt tgcttgaaat tttacgcaaa caagatttta
     2761 taaaaaccaa accttttatg atgcgtatag aataatgggt ttaaaagctt atttagatgg
     2821 aattttaggt gaagataagg cttgtaaatt tttaaaaaaa caaggctttg aaattttaaa
     2881 aagaaatttc cattcta
//
LOCUS       DAEBKH010000149         2861 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.150, whole genome shotgun sequence.
ACCESSION   DAEBKH010000149 DAEBKH010000000
VERSION     DAEBKH010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2861
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.150"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(102..416)
                     /locus_tag="KIL20_001549"
     CDS             complement(102..416)
                     /locus_tag="KIL20_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HBD2721561.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
     gene            587..2011
                     /locus_tag="KIL20_001550"
     CDS             587..2011
                     /locus_tag="KIL20_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HBD2721562.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEITPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSLVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALEHFEKISPDYAKGIKKALEK"
     gene            2068..2538
                     /locus_tag="KIL20_001551"
     CDS             2068..2538
                     /locus_tag="KIL20_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HBD2721563.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNANLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKTSLKILKFIKKF"
     gene            complement(2539..>2861)
                     /locus_tag="KIL20_001552"
     CDS             complement(2539..>2861)
                     /locus_tag="KIL20_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HBD2721564.1"
                     /translation="MRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDIL
                     VQSVDSSYLNSNYQLSITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKISEPSVYRYLK
                     KFKK"
BASE COUNT         1066 a          426 c          423 g          946 t
ORIGIN      
        1 attatattga gttaaaaaag tcaacataag ctcttgattg tttaaatagc gataaatttg
       61 cggtataaat tctcgcttat catcaaatcc aaataacatc tttaaccttt atagcaagaa
      121 aattctttat taagattaaa aattttacaa tattcacaat acacacaact tacacttctt
      181 tttgcacata ctaatggaat tttgcgcttt ttagcttcat ttttgatttt tttcatagta
      241 ttatgattta aaaagcttgt taacattact atacattctg tatcacaagg aatcggcttg
      301 cgattaactc tattttcatt acgtgcatcc cagtgttcta tttttttagc acctaaatca
      361 tgtaaaacag ctctaatagg agtgatttca tctgcaccaa taaccaaaac tgacataaat
      421 tctcctttgt gatttttaaa atatattttg ataattatta ttataatata aaaaaactaa
      481 atttattttg aaatttatta tcaataaaat gcaattattc agttaatttt aatttttaat
      541 agatataatt taccaattaa taaaatttat tatttaggag aaaacaatga aaaaattaac
      601 taacgatttt ggaaacatta tagccgataa ccaaaattca ttaagtgcag gcgcaaaagg
      661 acctttgctt atgcaagatt atcttttgct tgaaaaactt gctcatcaaa atagagaaag
      721 aattccagaa agaaccgttc atgccaaggg aagtggggct tatggagaaa taaaaatcac
      781 cgctgattta tctgcttata ctaaggcaaa aatatttcaa aaaggagaaa taactcctct
      841 tttcctacgc ttttctactg ttgcaggtga agcaggtgca gcagatgctg aacgcgatgt
      901 gagaggtttt gctattaaat tttacaccaa agaaggaaac tgggacttgg taggaaataa
      961 cactccgaca ttcttcatcc gtgatgctta taaattccct gatttcatcc atactcaaaa
     1021 aagagatcca agaacacatt taagaagcaa taatgctgct tgggattttt ggagtttatg
     1081 tcctgaaagt ttacatcaag taaccattct tatgagcgat agaggaattc ctgcaagtta
     1141 tcgtcatatg catggatttg gaagccatac ttatagtttt attaatgata aaaatgaaag
     1201 attttgggtg aaattccatt ttaaaaccca acaagggatt aaaaatctta ccaaccaaga
     1261 agctgccgag cttatagcaa aagatagaga aagtcatcaa agagatctct ataatgctat
     1321 agaaaataaa gattttccaa aatggaaagt tcaagttcaa attcttgctg aaaaagatat
     1381 agaaaaactt ggatttaatc cttttgattt aacaaaaatt tggcctcata gtcttgtgcc
     1441 tttgatggat ataggcgaaa tgattctaaa caaaaatcct caaaattatt ttaatgaagt
     1501 tgaacaagct gcctttagtc caagcaatat cgttcctgga attggcttta gccctgataa
     1561 aatgttgcaa gctagaattt tttcatatcc tgatgcacaa agatatagaa taggaactaa
     1621 ttatcatctt ttgcccgtaa atcgtgcaaa aagcgaagtg aatacttaca atgtcgctgg
     1681 tgctatgaat tttgatagtt ataaaaatga tgcagcttat tatgaaccaa acagctatga
     1741 taatagccca aaagaagaca aaagctatct tgaacctgat ttagtcttag aaggcgtagc
     1801 acaaagatat gctccactag ataatgactt ttatactcaa ccaagagctt tatttaatct
     1861 tatgaatgat gatcaaaaaa ctcaactttt tcataatatc gccgcttcta tggagggagt
     1921 tgatgaaaaa attatcacta gagctttaga acattttgaa aaaatttcac ctgattatgc
     1981 aaaaggaatt aaaaaagctt tagaaaaata atttttactt gccacttttg gtggcaaact
     2041 aaagattata ataattaagg aaaaacaatg acaactctta gtttagaaga agaaaaaaga
     2101 tttgaagagc tttgcaaaat ggcttttaat tttgcaagaa ataatgaatg tgaaaatctt
     2161 aaaatcatga tagaagcagg tttaaatgca aatttaaaaa ctcataaagg cgatagcttg
     2221 cttatgcttg cagcttataa taattcttat gaaagcgcta aaatgctttt agaaaaaggt
     2281 gcaaaagtag atgaaaaaaa cgatcgtgga caaaccccat tagcgggagt ttgttttaaa
     2341 ggatacttac ctatgtgtga acttttagtt aaatatggag caaatattga tgaaaacaat
     2401 ggtttaggaa tgacacctta tacttttgct attatgtttg gacgcaaaga tgtggcagaa
     2461 tttttactca aaaaatctaa aaataatttt ttaaagaaaa cgagcctaaa aatactaaaa
     2521 tttatcaaaa aattttagtt attttttaaa tttcttcaga tacctataaa cactaggttc
     2581 tgaaattttt aaaaattttg ctacgatagg aaccgctcct tttatattaa aaataccttt
     2641 ttcatatagc ttttcagcaa tttcttcttt ttgagtaatg cttaattgat aattagaatt
     2701 taaataacta gaatctacac tttgaactaa aatatcctct atcgagtgac ttaatgtttc
     2761 tatgcttgaa tcattttgag aaaaactaat atttcctaaa atatcaccca tatctccaat
     2821 tttttctaaa tcaatcatct tgcatattaa atctctcata a
//
LOCUS       DAEBKH010000150         2828 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.151, whole genome shotgun sequence.
ACCESSION   DAEBKH010000150 DAEBKH010000000
VERSION     DAEBKH010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2828)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2828)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2828
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.151"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..674
                     /locus_tag="KIL20_001553"
     CDS             <1..674
                     /locus_tag="KIL20_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HBD2721565.1"
                     /translation="TLKTCVLLAKIYFDEKNIEALKSIYKELYQLTKNKSFALALVEL
                     LNSQGKTEEALKISLQYDLDDDIKLALYQNLKRFDDAKKMSLALYHKTKNKEYLLRAA
                     VFEFEAANEAKKITPKVIDSVKEKFEQAIDKDSNALYLNYYGYLLIDYDLDVKKGIEL
                     VKLALEKDPQNLYYLDSLAWGYYKLGDCRQAWEILKQTLDDKEFANSDESKAHIKAIK
                     ACVKP"
     gene            671..1447
                     /gene="trpC"
                     /locus_tag="KIL20_001554"
     CDS             671..1447
                     /gene="trpC"
                     /locus_tag="KIL20_001554"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HBD2721566.1"
                     /translation="MILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKAL
                     KRVEKEVKIIAEVKKASPSKGVIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLE
                     YLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFAGADIIGINHRNLEDFTMDMSLCEKLIPQIPNSKIIIAE
                     SGLENKEFLEHLQNLGVDAFLIGEYFMREKDEGKALKALL"
     gene            1457..1942
                     /locus_tag="KIL20_001555"
     CDS             1457..1942
                     /locus_tag="KIL20_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HBD2721567.1"
                     /translation="MQYLYAPWRSEYFEKEKSICPFCDCANKIKSDEDLGVIFRAKHC
                     FGVMNRYPYSVGHFMVIPYVHEEHIENLSDEIWQEMSHFVRLGVKILKEQIHANGVNI
                     GMNLSKDAGAGIAPHCHYHLVPRWAGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNA
                     Q"
     gene            1932..>2828
                     /gene="mnmH"
                     /locus_tag="KIL20_001556"
     CDS             1932..>2828
                     /gene="mnmH"
                     /locus_tag="KIL20_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HBD2721568.1"
                     /translation="MLSEVEFAEFQKENFSLLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKARGASYICQNTAKHILKITQNFRIGEKVGIYCSRGGLRSKS
                     IAVILSELGFRVVRLKGGFKAYRTFVTHYFENEINFDFFTLCGNTGCGKTELLEQLPQ
                     AINLEKIANHLGSSFGDILGKQPTQKAFEAELFHNMQNLENFAFIESESRKIGDIILP
                     LKFYEKMQKAFKIYCFCSLENRVKRIQKIYQEKMTPLKFQQCVQKISPYISLNLRQDL
                     LQSYERKEWQRLITMLLEYYDKT"
BASE COUNT         1012 a          365 c          547 g          904 t
ORIGIN      
        1 gcactctcaa aacttgcgtc ttgcttgcta aaatttattt tgatgaaaaa aatatcgaag
       61 ctttaaaaag tatatataaa gagctttatc aacttaccaa aaataaaagt tttgcattgg
      121 ctttggttga gcttttaaat tctcaaggca aaacagaaga agctttaaaa atttctttgc
      181 agtatgattt agatgatgat attaaactcg ctttgtatca gaatttaaaa cgctttgatg
      241 atgctaaaaa aatgagttta gctctttatc ataaaacaaa aaataaagaa tatcttctac
      301 gagcggcagt ttttgaattt gaagctgcaa atgaagctaa aaaaatcact ccgaaagtaa
      361 ttgattctgt aaaagaaaaa ttcgaacaag ctatcgataa agatagcaat gctttgtatt
      421 taaactacta tggatatttg cttatagatt atgatttaga tgttaaaaaa ggtatagagc
      481 ttgtgaaact tgccttagaa aaagatccgc agaatttgta ttatttagat tctttagctt
      541 gggggtatta taaactaggc gattgtaggc aagcatggga aattttaaaa caaacattag
      601 atgataaaga atttgcaaat tctgatgaga gtaaagctca tataaaagcg ataaaggcgt
      661 gtgtaaaacc atgatattgg ataaaatttt tgaaaaaaca aaagaagatt taaaagaacg
      721 caaactaaaa cttccttatg atatgttagg gcgttcttta gcttcaaatc ctttctttcc
      781 aaaagatgtg attaaagctt taaaaagagt agaaaaagaa gttaaaatca tagcagaagt
      841 aaaaaaagca agccctagca agggagtcat tagagaagac tttgatcctt tgagtattgc
      901 tttaaattat gagaagaaca aagctgcggc gatttctgtt ttgactgagc cacatttttt
      961 taaaggttct ttagaatact taagtcttat acgccgttat acacaaattc ctttacttag
     1021 aaaagatttt atctttgatg agtatcaaat tttagaagct ttggtttatg gggcagactt
     1081 tgtattgtta atcgctaaaa tgctaagcat gaaagagctt aaaaaactgc ttgagtttgc
     1141 aagacattta ggtcttgagg ctttggttga aattcatgat aaagaggatt tgagtaaggc
     1201 tatttttgct ggagcggata ttatcggtat caatcatcgt aatttagagg attttactat
     1261 ggatatgagt ttgtgcgaaa aacttatccc acaaatccca aattcaaaaa tcatcatcgc
     1321 agaaagtggt ttagaaaata aagaattttt agagcatttg caaaatttag gcgttgatgc
     1381 ttttttaatc ggcgaatatt ttatgcgcga aaaagatgaa ggaaaggctt taaaagcttt
     1441 gctttaagga gggaaaatgc agtatttgta tgcaccatgg cggagtgagt attttgaaaa
     1501 agaaaaaagc atttgtccat tttgtgattg tgctaataag atcaaaagcg atgaagattt
     1561 aggcgtaatt tttagagcaa agcattgttt tggagtgatg aaccgctatc cttattctgt
     1621 ggggcatttt atggtgattc cttatgtaca tgaagagcat atagaaaatt taagcgatga
     1681 aatttggcaa gaaatgagcc attttgtgcg tttgggagtg aaaattttaa aagagcaaat
     1741 tcatgcaaat ggggtcaata tcggtatgaa tttaagcaaa gatgcaggag ctggcatagc
     1801 acctcattgt cattatcatc tagtgccacg ctgggcagga gatacaaatt ttatcacaac
     1861 cataggagaa actagggttt gtggtactaa tatcgagcaa gtttatcaaa aacttgtttt
     1921 ggcttttaaa aatgctcagt gaagttgaat ttgcagagtt tcaaaaagaa aatttctctc
     1981 ttttaatcga tgcaagaagc cctagagaat ttttgcattc tcatttgata ggagctttaa
     2041 atttttatgc actcaatgat gaagaatatc aagaaatagg aacgatttat aagaaaaatc
     2101 aagctttagc caaggctagg ggtgcgagtt atatttgtca aaataccgct aagcatatat
     2161 taaaaatcac ccaaaatttt cgcataggag aaaaggtggg gatttattgt tctcgtgggg
     2221 gtttgcgttc aaagtctatc gcagtgattt taagtgagct tggctttaga gtggtgcgtt
     2281 taaaaggtgg ctttaaagct tatagaactt ttgtaacgca ttattttgaa aatgaaataa
     2341 attttgattt ttttactctt tgcggcaata caggctgtgg aaaaacagag cttttagaac
     2401 aactcccaca agctataaat ttggaaaaaa tagcaaatca tttaggctcg tcttttggtg
     2461 atattttagg aaaacaacct acgcaaaaag cttttgaagc agaacttttt cacaatatgc
     2521 aaaatttaga aaattttgct ttcatagaaa gtgaaagtcg caaaataggg gatatcatct
     2581 tacctttgaa attttatgaa aaaatgcaaa aggcttttaa aatttattgt ttttgttctt
     2641 tggaaaatcg cgttaaaaga atacaaaaaa tttatcaaga gaaaatgact cctttaaaat
     2701 ttcaacaatg tgtgcaaaaa atcagccctt atatcagctt aaatttacgc caagatttgc
     2761 ttcaaagtta tgagagaaaa gaatggcaaa ggcttattac tatgcttttg gagtattatg
     2821 ataaaact
//
LOCUS       DAEBKH010000151         2704 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.152, whole genome shotgun sequence.
ACCESSION   DAEBKH010000151 DAEBKH010000000
VERSION     DAEBKH010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2704
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.152"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            85..858
                     /locus_tag="KIL20_001557"
     CDS             85..858
                     /locus_tag="KIL20_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HBD2721569.1"
                     /translation="MKQGDFTEVAKHYHNRPAYSPFLLEKLVACINDKNKNLKDLNIV
                     EVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQKFTQNLSNISWHKGSGEETCMSN
                     NQADWVIMASSFHWTDPKKSLPEFNRILTGGGYFTAIWNPRHIVEGSVFDEIEKEIKH
                     IVPELARVSSGTQNVKKWEEILVSTGDFTDCFFMECDYKEFWDKERYLGAWHSVNDIQ
                     AQAGEKRWKEILEMIEAKISHMQSIEIPYKIRAWTARKA"
     gene            911..1672
                     /locus_tag="KIL20_001558"
     CDS             911..1672
                     /locus_tag="KIL20_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HBD2721570.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKKDIKVA
                     DIGAGTGNLSIMLLERGCKVVSVEPNDAMREIGIERTKGEKVDWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALEEAHRLLKSEGYFSCMWNHRDLNDPVQKIAEDTIVEFVP
                     NYTRGTRREDQRPIIESRKDLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLEAD
                     EGNELFNKISDKISQRLPKEFSIKYTTRCWSAKKI"
     gene            1687..>2704
                     /locus_tag="KIL20_001559"
     CDS             1687..>2704
                     /locus_tag="KIL20_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721571.1"
                     /translation="MAELKFKTKAQNLKNLQTKLKKAKVLSLVLTSLEELISNEDKVL
                     QDIQTLKANRLIIRSSSLSEDSMKNSNAGAFLSLANIKADSKDELLKALYEVANSMPS
                     KSDEILVQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNSSITDGSSKSAKTYYH
                     YRDYLEFKDIRLQKIIELIKELEVLYNCCFLDVEFAFAIQDDEEELFCLQVRPLVMHE
                     KNNLFHSLPKEALYRFYKRFESLKESRSRVLGDKAIFGVMPDWNPAEIIGLRPKRLAF
                     SLYKEIITDNIWAYQRDNYGYRDLRSHPLIHSFLGIPYVDVRLSFNSFIPKKLDENIA
                     QKLVN"
BASE COUNT         1004 a          326 c          518 g          856 t
ORIGIN      
        1 aattttattt ttccgccgac aaaagatttg taaattaata aaaaaaagat ataattgcat
       61 tttaatttag agaaaggaat caatatgaaa caaggggatt ttacagaggt tgcaaagcat
      121 tatcataata gacctgctta tagtccgttt ttacttgaaa aacttgtagc ttgtatcaat
      181 gataaaaata aaaatttaaa agatttaaat attgttgaag taggagctgg cactggaaaa
      241 cttactaaga tgttgggaga aatgtttgga tgccaaatta gcgctgtgga accaaacgat
      301 aatatgcgtg aagaagggca aaaatttaca caaaatttat caaatatttc ttggcacaaa
      361 ggaagtggtg aagaaacctg catgagcaat aatcaagctg attgggtcat catggctagt
      421 tcttttcatt ggacagatcc taaaaaatct ctcccagaat ttaatcgtat attgacaggg
      481 ggggggtatt tcactgcgat ttggaatcct cgccacattg tagagggttc ggtttttgat
      541 gaaatcgaaa aggagattaa acatattgtt ccagagcttg ctcgtgtaag cagtggcact
      601 caaaatgtta aaaaatggga agaaattctt gtttcaacag gagatttcac agactgcttt
      661 tttatggagt gtgactataa agagttttgg gataaagaac gttatcttgg agcttggcat
      721 tctgtaaatg atatacaagc acaagcaggt gaaaaaaggt ggaaggaaat tttagagatg
      781 atagaagcta aaatttctca tatgcaaagt atagagattc cttataaaat aagagcatgg
      841 acagctagaa aagcataaaa tacctccttt ttttcatcaa gcttgtcaaa gatgaaaaaa
      901 aggaaataaa atgcaaaaac tagtagaaca agtgtgggat tataccaagc atgctaaatt
      961 ttatagctat agaccaaatt atgctccaaa aactatagat atgcttatta gtttagttgg
     1021 aaaaaaagat attaaagtcg ctgatatcgg tgcaggaact ggaaatttaa gcattatgct
     1081 tttagaaaga ggatgtaagg tagtatctgt agaaccaaat gatgcgatgc gtgagatcgg
     1141 gatagaaaga actaaaggtg agaaggttga ttgggttagg gcaacaggtt taaactcaac
     1201 acttcaaaat agtgaatttg attgggtgac ttttggtagt agttttaatg taatggatag
     1261 aaatgaagcc ttagaggaag cgcatcgctt attaaaatca gagggatatt tttcttgtat
     1321 gtggaatcac agggatttaa acgatcctgt acaaaaaata gctgaagata ctattgtaga
     1381 atttgtacca aattatacaa ggggaacaag aagagaagat caaagaccaa ttatagagag
     1441 tcgaaaggat ctttttgata atattgttta tattgaagag gatttttatt ttcatcaaag
     1501 cattgaaaat tatattaatg catggaaaag cgttaaaaat ccttactggg atttggaggc
     1561 tgatgaagga aatgaacttt ttaataaaat tagtgataaa atttctcaaa gacttcctaa
     1621 ggaatttagc ataaaatata ccactcgttg ttggagtgct aaaaaaatat aaaactaagg
     1681 aaaaatatgg cggagttaaa atttaaaacc aaagcacaaa atttaaaaaa tttacaaaca
     1741 aaattaaaaa aagcaaaagt tctatctttg gttttaactt cgcttgaaga attaatatca
     1801 aatgaagata aagttttaca ggacattcaa actttaaagg ctaatagact cattataaga
     1861 agttcttctt taagtgaaga tagtatgaaa aactccaatg caggtgcttt tctttctttg
     1921 gcaaatatta aagctgattc taaagatgaa ttattaaaag ctttatatga agttgccaat
     1981 tctatgccat caaaaagcga tgaaatttta gttcaaccta tgcttgaaaa tattactctt
     2041 tgtggcgttg gttttagtgt tgataaggat aatttttccc cttatttttg tcttcaatat
     2101 gatgaaaatg gttcaaatag ctctattaca gatggaagta gtaagagtgc aaaaacttac
     2161 tatcattaca gagattattt agaatttaaa gatattagac ttcaaaaaat tatagaactt
     2221 ataaaagaat tagaagtttt atataactgt tgttttttag atgttgaatt tgcatttgct
     2281 attcaagatg atgaggaaga acttttttgc ttgcaagtgc gtcctttggt tatgcatgaa
     2341 aaaaataatt tatttcactc tttaccaaaa gaagctttat atagatttta taaacgtttt
     2401 gagtctttaa aagaatcaag atctagagtt ttgggagata aagccatttt tggggtaatg
     2461 cctgattgga atccagctga aatcataggg ttaagaccta agcgtttagc ttttagttta
     2521 tataaagaaa tcattacgga taatatctgg gcgtatcaaa gagataatta tggttataga
     2581 gatttaagat cccatccttt aatccattct tttttaggca ttccttatgt ggatgtaaga
     2641 ttatctttta attcttttat accaaaaaaa ttagatgaaa atatcgcgca aaaacttgtc
     2701 aatt
//
LOCUS       DAEBKH010000152         2704 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.153, whole genome shotgun sequence.
ACCESSION   DAEBKH010000152 DAEBKH010000000
VERSION     DAEBKH010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2704
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.153"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..549)
                     /locus_tag="KIL20_001560"
     CDS             complement(<1..549)
                     /locus_tag="KIL20_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HBD2721572.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLIGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQIDALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILNANKNPSFENEEQIYIK
                     LTDKNFTLNHIFSKENRYLIATL"
     gene            complement(549..2357)
                     /gene="typA"
                     /locus_tag="KIL20_001561"
     CDS             complement(549..2357)
                     /gene="typA"
                     /locus_tag="KIL20_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HBD2721573.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            2492..>2704
                     /locus_tag="KIL20_001562"
     CDS             2492..>2704
                     /locus_tag="KIL20_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721574.1"
                     /translation="MSKPLNEEIFIEFKSDLAERKNEVLLQVLELLETFRSDKNEKMA
                     RISSELTEILENEENLEKILNAKNLEE"
BASE COUNT          855 a          500 c          398 g          951 t
ORIGIN      
        1 taaagtagcg ataagataac gattttcttt agaaaagata tgatttaaag tgaaattttt
       61 atctgtaagt ttgatataaa tttgttcttc gttttcaaag ctaggatttt tgtttgcatt
      121 taaaatttcg agtaaaattc cacaaaaaaa gcgtttgttt tcgtccaaaa actgaatatc
      181 ataaatttta aaatccttaa attcaaagca gttttgactt ttaaattctt tcaaatcctt
      241 tgtaagtcct agttttaaaa agtctttttg acttaaactt tgctttttaa atttcgcccc
      301 aaaacgacgc aaaaataaat ttaaagcatc aatttgcaat tctttttgtg cgagttttag
      361 ttttttagct gtaaaacgaa agaaaaaaac acctacaaaa acagctaaaa ttactgcgat
      421 taaggcatct cttataaaaa caaaggctaa aaagcctata agtaaggctt cgataatgct
      481 taggaatttt aagattccta agcgtttaag tatataaagt ctattatttt ctaagctttt
      541 taaatccatt aagattttgc tttttccatt ctttttcttt gagttgggtc aagatagcgt
      601 ttgcgaacac gcacatttac aggtgtaact tctacaagtt catcttcttc tatccactct
      661 aaagctcttt caagacttaa ttttctaggt ggcacaagct tgattgcatc atcgcttccg
      721 cttgctctta cattggtaag attctttcct ttgataggat taacatctaa atcatttgga
      781 cgagagtgct cacctataat cataccagta taaactttag tttgaggctc tatgaaaagc
      841 actccacgct cttgaaggtt aaacaaagaa taccccaaag ccacgccatt ttccatagaa
      901 attaaagctc cattgttacg cttttcaacc gcgccgctaa aaggacggaa ttctaaaaag
      961 ctatgattca tcacgccttc gcctttagta tcggttaaaa attggcttct aaaacctata
     1021 agtccgcgtg ctggaatttc aaactcaagt cttgtttgtc catctcctgt tggtgccatg
     1081 gttttcattt cagcttttct tttgccaagt ttttctatta ctgcaccgct aaattcttca
     1141 ggcacatcga taactaaatg ttcaaaaggt tctgttttaa ctccatcttc aacttttacg
     1201 ataacttcag gtcttcccat gcaaaactca aaaccttcac gacgcatatt ttcagctaaa
     1261 atagtgattt gaagttcgcc cctaccgctt actttaaatt taccttcgcc tgtgctttcg
     1321 tatttcatag caatattagt tttcatttca gcttctaaac gttcagcgat tttatttgaa
     1381 gttacatgtt ttccttcagt tcctgctaat ggtccatcat ttacagaaaa tactatgctt
     1441 aaagtcggct cttcaatgtg taaaggatca agtggcatag gattgtttgg atctacaacg
     1501 ctatcgccaa catctaaagc ttcaaaacct gctatagcta caatatctcc acttcctgct
     1561 tcttcaatat ccattttttc taagcccata aaaccaatga gttttgaaat tctaccattt
     1621 actttggtgc catcagcttt tgcaagcatt acgctttgat ttttcttaac aaccccattg
     1681 aaaattctag caatgcctat tttacctacg aaattatcat accctaaagt gaaaacttga
     1741 agttgtaaag gattgtcatt tgtaccactt ggcgctggaa cgcgttcaag tatggtttta
     1801 aaaagtggtt ccatattatc actttcatcg tttagatcaa gcttagcata accatttttt
     1861 gctgcagcat aaactatagc aaagtcaagt tgctcatcgt ttgcatctag ggctacaaaa
     1921 agatcaaaaa tttcattgat cactctttca ggatcagcag ctggtttgtc gattttgttg
     1981 attacaacta taggtttaag ccctaaagat aaagcttttt taaccacgaa tttagtttgc
     2041 ggcataacgc cttcttgagc atccactaaa agcaaaactc catcaatcat ttttaaaacg
     2101 cgttctactt ctccgccaaa atcagcatgc cctggagtat ctatgatgtt gatttttgta
     2161 cctttgtaat tgatcgctgt gttttttgaa agtatggtaa taccgcgttc tttttctata
     2221 tcgttgctat ccataacgcg ttctgaaatt tgttctcttt cgctaaaggt gcctgattgt
     2281 tttaacaatt catctaccat agtggtttta ccatggtcaa cgtgagctat aactgctata
     2341 tttctaatgt tttccaaatt ttcttctcca aagctaaatt tttaaaagct tagattatac
     2401 aaaaatttaa cttaaactac aaagcatcaa aacttggaac acttcttgct ttaaagactt
     2461 gtgaaattaa aattttaaaa aggaagttaa aatgtcaaaa ccattaaatg aagagatttt
     2521 tattgaattt aaaagcgatt tagctgagag aaaaaatgaa gttttacttc aagttttaga
     2581 acttttagaa acttttagat cagataaaaa tgaaaaaatg gcaagaattt caagtgagct
     2641 tacagaaatt ttagaaaatg aagaaaattt agaaaaaatt ttaaatgcta aaaatttaga
     2701 agag
//
LOCUS       DAEBKH010000153         2685 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.154, whole genome shotgun sequence.
ACCESSION   DAEBKH010000153 DAEBKH010000000
VERSION     DAEBKH010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2685
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.154"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..769)
                     /locus_tag="KIL20_001563"
     CDS             complement(<1..769)
                     /locus_tag="KIL20_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HBD2721575.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKYSIFKHPDVEECYIEELLKKLSYKKPYQVIFKNIDKLGKTFYLETLLIPILD
                     KNNELIEIVAFSHDVSNSFKLNEELALNHAKLRELSINLENTVKNHQQEFIQLGKKFE
                     KKMQIALEKNEKDIKIVYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDE
                     KGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFI"
     gene            complement(766..1425)
                     /locus_tag="KIL20_001564"
     CDS             complement(766..1425)
                     /locus_tag="KIL20_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HBD2721576.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYHLFRIFAYIALGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFIKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     KGILVMMIFGISTLPAMLFFSKISQFFSDFLKNLFNYLSYGVIVCYGMNLAYIGFKAF
                     Q"
     gene            complement(1422..2540)
                     /gene="carA"
                     /locus_tag="KIL20_001565"
     CDS             complement(1422..2540)
                     /gene="carA"
                     /locus_tag="KIL20_001565"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HBD2721577.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEVKKLAEAKIPMLGICLGHQLLSN
                     AFGYATYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            complement(2540..>2685)
                     /locus_tag="KIL20_001566"
     CDS             complement(2540..>2685)
                     /locus_tag="KIL20_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HBD2721578.1"
                     /translation="LKIYEKLEDEVYEKISNYKTKPIPGSEEYDLIFEKLYQEELRKK
                     GMF"
BASE COUNT          964 a          454 c          281 g          986 t
ORIGIN      
        1 ttataaatac acactgttct acccccttat taaacaaagt tctaaacaca tcaattgttt
       61 ctgacatatt tttaatcata tcttttgatt gtgaataaat ctcagcaaat cctttttcat
      121 ctttaagatt ttgtttcatt tgaaacatag caataccaag ctcatttaac ggttgcctcc
      181 attgatgagc tatatcacta atcatttgct ctaatgaaga tttcaaaatc tcttcataga
      241 ctattttaat atctttttca tttttttcca aggcaatttg catttttttc tcaaattttt
      301 tacctaactg tataaattcc tgttggtgat ttttaactgt attttcaaga ttaatactta
      361 attctcttaa tttagcgtga tttagagcaa gctcttcatt aagcttaaaa gaattactaa
      421 catcatgaga gaatgctact atttctatta attcattatt tttatccaat atggggatta
      481 ataaagtttc aagatagaaa gttttgccta atttatcaat atttttaaaa ataacttgat
      541 aaggtttttt atatgaaagt ttttttaaaa gttcttcaat ataacattcc tcaacatctg
      601 gatgtttaaa tattgaatat ttttttccta taagctcttt tttactatat ccacttattt
      661 gacaaagctt atcactgaca aaaattaaat ttccttgaac atcagctctt gaaaaaattg
      721 tatttttttc aagagcttta aaaaactgat ctttaaaaaa atctttcatt gaaaagcctt
      781 aaaacctata taggcaagat tcataccgta acaaacaata acgccatacg ataaataatt
      841 aaacaaattt ttcaaaaaat cactaaaaaa ctgtgaaatt ttagaaaaaa ataacatcgc
      901 aggtaaagtt gatatcccaa aaatcatcat taccaaaata cctttaaaaa tattttgctt
      961 actcattgca ttggctataa aaaaatacac caatccacaa ggaacaaaac catttgaaaa
     1021 tcctaaaaat atggctgatt ttaatccttt aaaattttta gattttttaa taattttctt
     1081 tataaaacta tcaaaaaaaa cattattttc aataaaagat aacatattgc ctctaaaaat
     1141 aagagcaaaa cccaaaatca tcataaatat accaagaata aaaaatgaca aactttgaac
     1201 cttagcattg attgctaaga tattcccaaa agttccaaaa attatcccta aagcaatata
     1261 agcaaaaatt ctaaacaaat gataaataaa agttaataaa aataaattat tgctttttga
     1321 attcaaattt ataaaaagta aattaaaacc accacacata gaatagcagt gtccaaaact
     1381 agataaaaaa gcaacgctga taatagctaa aaaatctata ctcacatcaa attcataaat
     1441 tctttaaaaa tatacttgct ttcatgaggg cctgaagaac tttctgggtg atgttgcact
     1501 gaaataatag gatagtcttt atatcttact ccttcaacat tatcgccaaa taaatttcta
     1561 tgagtgatat gagccacttg agctaattct tctggaacat tataattatg attttgtgcg
     1621 gtaatttcta ccgtttttgt atcaagattg atcacaggat gatttgctcc atgttgtcca
     1681 aatttcattt tataagttgc atatccaaaa gcattactta aaagctggtg acctaagcaa
     1741 attccaagca tgggaatttt agcttctgca agttttttaa cctctgcaat ctcttgtttt
     1801 aaaatccttg gctcacctgg accattagaa agaaatacgc cttggatttc acctttttta
     1861 tacagagtaa tcaactcatc tgctttaaca ttatatggat aaacttctac ttcaaaacct
     1921 acttctacaa gttcatttag gatatttgtt ttaacaccat aatctataac agcaactttt
     1981 ttctcacttc ttttagcatc attaaatttt tgaaaactag cgttccaaac accttgttta
     2041 tgagaataat ttttcttagt gctaacttct tttacaaaat ttacttcatc aatttttgct
     2101 gatttttcta aggcgatttt taaatcttct ttatttgaaa tttcagttga aattacagct
     2161 cttaaattgc cattatttct tatcattttt actagatatc tcgtatcaag ttcataaatt
     2221 cctatttttc catgtttttc aagataatct tgcagacttt ctttagcgcg aaaatttgaa
     2281 aaactagaac ttaattcacg cattaaaaca ccacttgcaa aaatttcctt actttcatta
     2341 tcattttcat tggttcccac tataccaatt tctggcatgg aaaatacgat aaattgccct
     2401 gcataagaag gatctgaaat aatttcttga taccctgtta aagaagtgtt aaacacaagc
     2461 tctccaaaaa aagtaccgct ctttccaaaa gccttagcac ttaaaaaaat atcattttct
     2521 aaataaatat aagccttcat taaaacatac ctttttttct aagctcttct tgatagagtt
     2581 tttcaaagat aagatcgtat tcttcgctac ctggaatagg ttttgtttta taattgctaa
     2641 ttttctcata aacctcatct tcaagttttt cataaatttt aagat
//
LOCUS       DAEBKH010000154         2665 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.155, whole genome shotgun sequence.
ACCESSION   DAEBKH010000154 DAEBKH010000000
VERSION     DAEBKH010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2665
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.155"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..301)
                     /locus_tag="KIL20_001567"
     CDS             complement(<1..301)
                     /locus_tag="KIL20_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HBD2721579.1"
                     /translation="MFSSFFASKKWALWAYLGLFLLLFFLYIQTSLNVAINSWYSDFY
                     NVLQKPKIELLDSNSTQKIEENLENNTTLIQEANQRAEQNFQKANFINKGALYYYQ"
     gene            494..610
                     /locus_tag="KIL20_001568"
     CDS             494..610
                     /locus_tag="KIL20_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721580.1"
                     /translation="MSMKKIILFLLCVGFAFACSEHSHTDFKDLNKTEYNSQ"
     gene            621..1625
                     /locus_tag="KIL20_001569"
     CDS             621..1625
                     /locus_tag="KIL20_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HBD2721581.1"
                     /translation="MKKIFFMFLTAFSFLGASELNIYSARHYDADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNANIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLDNLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR
                     "
     gene            1625..>2665
                     /locus_tag="KIL20_001570"
     CDS             1625..>2665
                     /locus_tag="KIL20_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HBD2721582.1"
                     /translation="MYKTLKYYKLGAILLALFLVLPIFGIFAELFYILFQNFNTSDLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISVGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRIDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALVTALITTF"
BASE COUNT          919 a          332 c          400 g         1014 t
ORIGIN      
        1 tttgataata atacaatgca cctttattga taaaattagc tttttggaaa ttttgttcag
       61 ctctttgatt agcctcttgg attaaagtgg tattattttc aagattttct tctatttttt
      121 gcgtagaatt agaatccaaa agttctattt ttggcttttg taaaacattg taaaaatcac
      181 tataccatga attgattgca acatttaagc ttgtttgtat atataagaaa aataacagta
      241 aaaaaagccc caaataagcc cataaagccc attttttact tgcaaaaaat gaagaaaaca
      301 tgctaccacc ttttaaaaga aaaattttaa tcaactttat ttaatcaaga gtttattaaa
      361 aatcataaat ttatcaacac atgtgtcaaa aataaacctc tttattcttt aaagaaatat
      421 aaaaatataa agattacgtc atatttactt tttaatatta atatttctta tcaaaatatc
      481 taaaaaggaa ttaatgtcta tgaaaaaaat aattttattt ttactatgcg ttggctttgc
      541 ttttgcttgc tctgaacatt ctcatactga ttttaaagat cttaataaaa ccgagtataa
      601 ttctcaataa aggataaaat atgaaaaaaa tcttctttat gtttttaaca gctttttcat
      661 ttttaggtgc tagtgagctt aatatttact cagcaagaca ttatgatgct gattttgaaa
      721 tcatcaaaaa attcgaagaa aaaacaggca ttaaggttaa tcatactcaa gccaaagctt
      781 cagaacttat taaaaggctt tctcttgaag gaagtaattc tcctgctgat attttcatca
      841 cagctgatat ttcaaatctt acagaagcta aaaatttagg acttttatcc cctgtttcat
      901 caaaatattt agaagaattt atacctgctc atttaaggga taaggataag gaatggtttg
      961 cgatcacaaa aagagcaaga attattgctt ataataaaaa cgcaaatatt gacattagca
     1021 aaatgaaaaa ttatgaagat ttagcaaaag ctgaatttaa aggagaaatt gttatgagaa
     1081 gtgctacagc tccttatagc aaaactcttt tagcatctat tatagctaat gacggaaata
     1141 aagaggctaa agcatgggct aaaggtgtgc ttgacaatct tgcgacaaat ccaaagggtg
     1201 gagatagaga tcaagccaga caagtatttg caggcgaagc taaatttgca gttatgaata
     1261 cttattatat agggctttta aagaattcta aaaatccaaa agatgtagaa gtggggaatt
     1321 ctttgggtat tatttttcct aatcaagaca atagaggaac gcatattaac attagcggta
     1381 ttgctatgac aaaatcaagt aaaaatcaag atgcggctaa aaaatttatg gaatttatgt
     1441 taagtcctga aattcaaaaa attcttactg atagtaatta tgaatttcct ataagaaatg
     1501 atgtagaatt aagccaaacg gtaaaagatt ttggaacttt caaagaagat caaattcctg
     1561 tgagtaagat agcagaaaat attaaagaag ctgttaaaat ttacgatgaa gtcggtttta
     1621 gataatgtat aaaaccctaa aatactataa actcggggca attttacttg ccctttttct
     1681 tgttttgcct atttttggta tttttgctga acttttttat attttatttc aaaattttaa
     1741 tacaagtgat ttaacccaat tttcatctat taaagaaaat ttgagtcatt tttttgatta
     1801 tttattttta aaattcatca aagatacttt tataattagc gtgggagtat tgtgtttaag
     1861 cttgattttg ggtgtgagtt ctgcttattt gatcgcaaat tatgattttt atttctgtaa
     1921 aattttagaa aaattactca ttttaccctt ggccatacct gcttatattt tagcctttgt
     1981 ttatgtggga attatggatt ttcaaggatt ttttcatgaa aattttggct ttaggataga
     2041 ttttttcaat cattatggtg ttatttttgt tttggctatt tctttatatc cttatattta
     2101 tttatttgct aaaacagctt ttaaaagtga agctaaagag gcttatgaag tagctaaaat
     2161 catgaaatat tccgaattta gaatttttac acgcgtggca cttttgagtg caagacctgc
     2221 cattttttct ggagctttat tggttttaat ggaaactttg agtgattatg gtgcaagtgc
     2281 ttatttggga gtagatactt tttcggctgg aatttttaaa ctctggtatg atttgaatga
     2341 ttcttattct tctagtgttt tatcgggtat tttaatgctt tttgtatttt tgattatgta
     2401 tgtggattat tattataaaa ataaacatca ttatagtttt aatcaaaatt tagctctttt
     2461 tatcaaaaaa agaaaattaa atcctattaa acaaattcta tcctgtattt attgttttat
     2521 gattgctttt gtaggtttta ttttaccttt tatttggcta gtttattggg ggttaaaaga
     2581 tcataagctt tttgaatcac aattttatat tatcagtttt caaactataa tcttagcttt
     2641 agtcactgct ttaattacca ctttt
//
LOCUS       DAEBKH010000155         2627 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.156, whole genome shotgun sequence.
ACCESSION   DAEBKH010000155 DAEBKH010000000
VERSION     DAEBKH010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2627)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2627)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2627
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.156"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..1277)
                     /locus_tag="KIL20_001571"
     CDS             complement(<1..1277)
                     /locus_tag="KIL20_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HBD2721583.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISTWLQNNDVGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDL"
     gene            1307..2428
                     /gene="tgt"
                     /locus_tag="KIL20_001572"
     CDS             1307..2428
                     /gene="tgt"
                     /locus_tag="KIL20_001572"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HBD2721584.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAITYHKSMQNKGIGIGQNIFGIIQGGTDYKERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEAIDPACSCYTCCNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            2430..>2627
                     /locus_tag="KIL20_001573"
     CDS             2430..>2627
                     /locus_tag="KIL20_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HBD2721585.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQDEEFKLSSIEEFSNF"
BASE COUNT          934 a          401 c          384 g          908 t
ORIGIN      
        1 aacaaatctt cgcgatattg caaatttaaa agagggtttt catcattttt attaataatt
       61 tgtatatttt tatcataaag cttagataaa cttctaaaat actcctccat atctgtagta
      121 ttttgagaat ttggattata ataatataaa ataactccaa aatcaagctg tttacttaaa
      181 tcagtaatga catttgcatt gttttcaagt tcactctcat cagcacttaa aataatcgct
      241 tctttaagtt catcaaaaga agcttcaccc actttcataa taggaatttt taaatcaaaa
      301 aaagcttgtt tttctttctc aaaatttttt atatcggtta caactaatcc tacatcatta
      361 ttttgcaacc atgtggaaat ttgtttaaaa tccgtgttga aataatcaaa aaacacacct
      421 tctttatcct cagaaagttt ttttaatttt tcatacatta cccctaattt aggattgata
      481 acatgtataa aaaatctttt tgcattgctt ttttgagtta attttaaagt agtatcaagc
      541 actctttctt gcatattttg attcatattt ttcatatcaa ttaaagcaaa aacattactt
      601 ccaaaaggca taggaaattg ccctgctttg cctcttatat tatgaaaaat actttgtaaa
      661 acaacaggat ctccaacgat caaaatgcta tcatttggct ctaaaacaaa agatggtttt
      721 acaaaataaa tcttagaatt tctataaata aggactatgc gccacctttt ttgttgtatt
      781 gaacttatgt gcctataagc aaaaatagac cctgctggaa tttttacttc cataatctct
      841 ccaaccccaa gtcctatata ctgagctgtt aaagcaatat ctggtaaaaa atccataaat
      901 ctacggctta aagtcattct agcatcagct aaatttgcat gagtatcatt aacacttaac
      961 ccccaaaaat ccattatttc tatttctaaa tttggattta aagaacgcaa agcctcataa
     1021 ctttttttag tttcaaattc atcttgcata taaataaaag cctgtttaaa atctttactc
     1081 ataatatttt caagacgcgc tgtgcttgta ggatcaaaat aatgcaagtc aatatactca
     1141 ctagaaatat ttaagttatt tttttcacta ttttgacaca ctactgtaaa aaagtaacct
     1201 aagccttttt caaaacaaag cctttctaag aaatgctttg ctaaaatacc gtctattata
     1261 attaaaatat tattcatttt aaactccaaa aaggaaatta taacaaatgg aatttaaatt
     1321 aaagcataaa gatggaatgg caagggtttg tgaaatcact accgcacaca gcactttttt
     1381 aacccctgtt tttatgcctg ttggcacagt aggagcggtt aaaagtcttg atgctaatga
     1441 tatgaaaaat gagcttgatg caaaaattat tttagcaaat acctatcaca tgtacttgcg
     1501 tccaacttcc aaagtggtaa aagattttgg aggtttgcat ggttttacga aatttgatag
     1561 aagtttttta accgatagtg gtggttttca ggctttttct ttaagtaaaa attctaaaca
     1621 ttttaatgaa ggtatagaat ttaaaagtca catcgatggg agtcgtcatc tttttactcc
     1681 aaaaagtgtt ttagatactc aatatgattt taattctgat attatgatga ttttagatga
     1741 tttagtagcc ctacccgcaa ccaaagaaag ggttaaaatt tctgttgatc gcactatact
     1801 ttgggcaaaa gaggctatta cttatcataa aagtatgcaa aataaaggta taggtatagg
     1861 gcaaaatatt tttggtatta tccaaggtgg tacagattac aaagaaagaa agcgttgtgc
     1921 tttaagttta aatgaaatgc catttgatgg tttagctata ggtgggctta gcgtgggcga
     1981 agaaaacgcc ttgatgtacg aaacagtcca aaacttaaac ccttatctag atgaaaatcg
     2041 tccaagatat ttaatgggcg taggaactcc tgaagattta gtagaaaatg ttgagcgagg
     2101 ggtagatatg tttgactgcg tgatgccaac tagaaatgca agaaatggaa catttttcac
     2161 aagttttgga aaatttaata tcaaaaaagc agaatttatc aacgatcatg aagccataga
     2221 tcctgcttgc tcatgttata cttgttgtaa tttttcaagg ggttatttaa accatctttt
     2281 caaagctaaa gaacttactt tttttcgttt ggcaagtttg cacaatctac attattatct
     2341 tgaacttgca agaaagatgc gtgaagcaat tttgaataat tcttttacgc aatttaaaag
     2401 aaatttttat cacttaagag gcaaataaaa tgctagaact acacgaaaat ctaaaaaaaa
     2461 tcctacaagc aaagaattta gaaactttct atagtgaaat ttatggacaa aaaatttttg
     2521 tttatgtggg attaaatttg gaaacttggc tttttaacga tgaaaaaatt tataaacttc
     2581 aagatgaaga atttaagctt tctagtatag aagaattttc aaatttt
//
LOCUS       DAEBKH010000156         2558 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.157, whole genome shotgun sequence.
ACCESSION   DAEBKH010000156 DAEBKH010000000
VERSION     DAEBKH010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2558)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2558)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.157"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..107
                     /locus_tag="KIL20_001574"
     CDS             <1..107
                     /locus_tag="KIL20_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HBD2721586.1"
                     /translation="ATNFCNENAHEDFIKNHQKAKEKLEEYLKKYHYI"
     gene            130..1200
                     /gene="rlmN"
                     /locus_tag="KIL20_001575"
     CDS             130..1200
                     /gene="rlmN"
                     /locus_tag="KIL20_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HBD2721587.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     SLPKYLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRVESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDGLRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            1297..2325
                     /locus_tag="KIL20_001576"
     CDS             1297..2325
                     /locus_tag="KIL20_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S cluster-binding domain-containing
                     protein"
                     /protein_id="HBD2721588.1"
                     /translation="MLNTTKLLENKLFQERYIKPNIDWYFSYLNGKRGMSRIYKTPYA
                     ILMKKFFLQKYFEKRIKKRIIDIPYLELVLTTKCTMRCQSCNNLMQYFSQNNQYTCTF
                     EGIKKSLEILLSKVDSIARIRIIGGEPLLFKDLPKLIDYLNCQKKILTFSLVTNGTID
                     FKDELINKLKHSKKVRKITISNYKNSPNLKIPLKQEDIIKKLIKNKIPYSLDSNKENS
                     TWFDPEKIYKRGRNKEEIIKNYYYCKMPCVSLMTSEGENLKGKELASNGAIFVCPVSS
                     SLSRLKGLNEFEGDFLNLDDNIEKFFEFYIKDFYKACDYCRDFSKPYKRIPIAIQTNK
                     TLKLEKED"
     gene            complement(2438..2514)
                     /locus_tag="KIL20_001577"
     tRNA            complement(2438..2514)
                     /locus_tag="KIL20_001577"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2478..2480),aa:Met,seq:cat)
BASE COUNT         1021 a          334 c          400 g          803 t
ORIGIN      
        1 gtgcaacaaa tttttgcaat gaaaacgctc acgaagattt tataaaaaat catcaaaagg
       61 caaaagaaaa attagaagaa tacttaaaaa aatatcatta tatttaaaaa ttcaaaaagg
      121 aaaataattt tgaaagagct tgttaatatt ttagattttt tacctgaaga attaggagaa
      181 aaaatcaaac cgatgtttcg cgtgaaacaa atttatcaat ggatttatca aaaatatgcc
      241 aataattttt ccgatatgtc aagtttacca aaatatctac gtttagaact tgcgcaaaat
      301 tttcattttt cccctgtaaa atgtgttaaa aatgagcaaa gtaaagatgg aagtataaaa
      361 tatctttttg aactcgttga tggtttaagg gtagaaagtg tgcttttgcc tatgaaagaa
      421 gaaaaaatag acgcagaagg caaaagaatt tctcatgcaa gatacactat ctgtgtttct
      481 tctcaagtgg gttgtaaaag tggatgtagt ttttgtctta ctgccaaggg tggtttgaaa
      541 agaaatttaa gtgcagggga gatagtcgga caaattttat ggatcaaaaa acaaaataat
      601 atcccttatg aacgccgtgt aaatatagta tatatgggta tgggcgagcc tttggataat
      661 cttaaaaatg tttctaaagc ggtaaaaatt ttagcacaaa atgatggact tgccataagt
      721 cctcgccgtc aaaccatcag cactagcggt ttggcaaaac aaatcaaaga attaggtcaa
      781 atgaatttag gtgttttact tgctatatca ttgcatgcgg ttaatgatgg gcttcgaacc
      841 gaacttatgc ctatcaataa agcttataat atcgctgcga ttatggatgc ggtgcgtgaa
      901 tttcctatag atcaaagaaa aagagtgatg tttgaatatc ttttgatcga tggtatcaat
      961 gataagcttg aacacgctaa agaattagtc aagcttttaa atggtattaa agccaaagtg
     1021 aatttaatac tctttaatcc acatgaagga agtttatata aacgccctag tttagaaaat
     1081 gcgattaaat ttcaagattt actcagtagt aaaggtgtaa cttgcactat aagagaaagt
     1141 aaagggcttg atatctcagc tgcttgtgga cagcttaaag aaagggcaaa agaacaatga
     1201 caatgctaga tatttttgaa atcgttttta taacagctgt tgtaattata ggtttttttg
     1261 gtataattta ttttctaaat aaagaaaggt gaaataatgt taaatacaac aaaattactc
     1321 gaaaataaat tatttcaaga aagatatatt aaaccaaata tagattggta tttttcttac
     1381 ctaaacggaa aacgaggaat gtcaagaatt tataaaacac cctatgcaat tttaatgaaa
     1441 aaattttttt tacaaaaata cttcgaaaag cgtattaaaa aaagaataat agatatacct
     1501 tatcttgagc tcgttttaac tacaaaatgc accatgcgtt gtcaatcttg caacaattta
     1561 atgcaatact tctctcaaaa taatcaatat acttgcacat ttgaagggat aaaaaaatca
     1621 cttgaaattt tactttccaa agtggatagt attgcaagaa ttagaattat aggtggagaa
     1681 ccattattat ttaaagattt acctaaactt attgactact taaattgtca aaaaaaaatt
     1741 ttgacattta gtttagtaac aaatggtact attgatttta aagatgaatt aattaataaa
     1801 ctcaaacatt ctaaaaaagt taggaaaatc actatttcaa attataaaaa ttcaccaaat
     1861 ttaaaaatcc cattaaaaca agaagatata atcaaaaaac ttataaaaaa taaaatccca
     1921 tactctctag actccaataa agaaaattct acatggtttg atccagaaaa aatttacaaa
     1981 agagggcgca acaaagaaga gattataaaa aattactatt attgcaaaat gccctgtgta
     2041 agtttaatga caagcgaagg agaaaatcta aaaggtaaag aattggcttc aaatggagct
     2101 attttcgtat gtccagtttc aagttcttta agtcgtctta aaggtttaaa tgaatttgaa
     2161 ggcgattttc taaatttaga tgataatata gaaaaatttt ttgaatttta tattaaagat
     2221 ttctataaag cttgtgatta ttgtagagat tttagcaaac cttataaaag aattcctatt
     2281 gccattcaaa ccaataagac tttaaaactt gaaaaagaag attaaaaata tatttcaatc
     2341 tttaatatta gtatatttgc ttttgttcat aataaactag caactaaaaa caaatatttt
     2401 taaattttta aaaaacaaaa gaagcaataa aaatggatgg tgtcaagggg gagacttgaa
     2461 ctcccgacct ccggcttatg agaccagcgc tctaaccagc tgagctaccc tgactaaaaa
     2521 taaaaatata attatactac tttttactaa aaattttc
//
LOCUS       DAEBKH010000157         2504 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.158, whole genome shotgun sequence.
ACCESSION   DAEBKH010000157 DAEBKH010000000
VERSION     DAEBKH010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2504
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.158"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..306
                     /locus_tag="KIL20_001578"
     CDS             <1..306
                     /locus_tag="KIL20_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HBD2721589.1"
                     /translation="IECSKMLCEILKLQTTLGVHEKNQIRSQKGKEKGYFVDYQKIWL
                     ENGGELIKINKHKYYKLHHSQKNLEEIPSQKRSMYKKRFAMLEEIKTNLDKTLSIQD"
     gene            393..770
                     /locus_tag="KIL20_001579"
     CDS             393..770
                     /locus_tag="KIL20_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HBD2721590.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLTKNSAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            779..1330
                     /locus_tag="KIL20_001580"
     CDS             779..1330
                     /locus_tag="KIL20_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HBD2721591.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
                     QHEEKLKEIDIDAYDSDDTNLPF"
     gene            1341..1601
                     /gene="rpsR"
                     /locus_tag="KIL20_001581"
     CDS             1341..1601
                     /gene="rpsR"
                     /locus_tag="KIL20_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HBD2721592.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(1661..>2504)
                     /locus_tag="KIL20_001582"
     CDS             complement(1661..>2504)
                     /locus_tag="KIL20_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HBD2721593.1"
                     /translation="KKYLIPDELKKHGLKSNELFIDDETIELIISDYTRESGVRNLRR
                     KVAELCRKSAKKLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTS
                     VGGDVLKVEAVKIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIID
                     PKVNVYDSYNIHIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKG
                     KVLPIGGLKEKLIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLE
                     YTLV"
BASE COUNT          944 a          413 c          357 g          790 t
ORIGIN      
        1 atagaatgct ctaagatgct ttgtgaaatt ttaaaacttc aaactacttt aggtgtacat
       61 gaaaaaaatc aaatccgttc tcaaaaagga aaagaaaaag gctattttgt agattatcaa
      121 aaaatttggc tagaaaatgg tggagaatta ataaaaatca ataaacacaa atactataaa
      181 ctccaccact ctcaaaaaaa cctagaagaa atcccttcgc aaaaacgctc catgtataaa
      241 aaacgttttg ctatgcttga agaaatcaaa acaaatttag ataaaacctt aagtattcaa
      301 gactaattaa gtatattttg atataatcta gtcttgcttt atgcaaaatc cttgctcata
      361 aaaatgggct ttaatatcca taaggagaaa agatgaaaca ttatgaggtt ttatttatct
      421 taaaaccaac acttactgaa gaggaagtga atgcgaagtt ggaattcgtt aaagaagtcc
      481 taaccaaaaa tagtgcagaa attgaaactg ttgttccaat gggtactaga aaattagcgt
      541 ataaaatcaa aaaatacgaa agaggaactt attttgtgat ttatttcaaa gctcctacaa
      601 acttgatcgc tgagcttgaa agggtgttaa gaatcactga agaagtaata agatttttaa
      661 tcgtaaaata tgaaaataaa aaagaaattg cagcttggga aaaactgagc cacgggatta
      721 agcaatctaa aaaagaaatt aaacctttag atgctcctga aattcaataa ggaaaaagat
      781 gtttaacaaa gttgttttgg ttggaaatct tacacgtgat atagaaatgc gttatgcaca
      841 aagcggtagt gctattggag cttccgctat agcagtaaca agaagattta ccgcaaatgg
      901 agaaaaaaga gaagaaactt gctttattga tataagcttt tatggtcgca ccgcagaagt
      961 tgcaaaccaa taccttacaa aaggttcaaa agtactcata gaaggacgtt tgagatttga
     1021 acaatggagt gatcaaaatg gacaaaatcg ctctaaacat agcattcaag ttgaaaatat
     1081 ggaaatgctt ggcaattcca atgctccaca acaaggcgga aattttggca ataatagctt
     1141 ttcaaacaac aattatagtg gaaactatga aaatcaaagc tatgatcctt atatgagtga
     1201 aaatcaaaat tttaataaag caaaagcaaa ccctgctcca caaagaaacc aaaacccaca
     1261 acacgaagaa aaattaaaag aaattgatat cgatgcttat gatagcgatg atactaattt
     1321 accattttaa aggataaact atggcagaaa aaagaaaata ctctcgcaaa tattgcaaat
     1381 acactgaagc aaaagttgaa tttattgatt ataaagatac agcaatgtta aaacatgctt
     1441 tatctgaaag atttaaaatc atgccacgcc gtttaacagg cacaagcaaa aaataccaag
     1501 aaatggtaga agttgcaatc aaacgcgcaa gacatgtagc ccttatccct tatatagtgg
     1561 atagaaaaga agtaatcaat aatccttttg aaggactata atcttttaaa gcaaacttgt
     1621 aaaaagtttg ctttcttata catttattct caaaataaag ttaaaccaaa gtatattcta
     1681 aaacatcact gaaagtatca acagcaatga tttccatatt gtctctaacc tcactaggaa
     1741 tatcttttaa atctctttcg taattttttc ttggaattaa agctgttttt atatctgctt
     1801 tataagctgc aattaatttt tcttttaatc cgcctattgg taaaactttt ccttttaaat
     1861 ctatttcacc cgtcattgca acatctgctt taaccttttt atcactaaaa atagaagcaa
     1921 tagctgtgct tatcgtaata cctgcacttg ggccatcttt tggagtagct ccatctggca
     1981 catgtatatg aatattataa ctatcataaa cattaacttt aggatcaata attatttttt
     2041 taggtatttt tatttttcct tcatcgatta aaacttttat catgctaaaa gcaattctag
     2101 ctgattcttt cattacatca cccaaacttc ctgtgagcgt taattctcct ttacctttaa
     2161 tttttacagc ctctactttt aaaacatctc cacctacgct tgtccaagcc aaaccattga
     2221 cctgacctac ttgattttct ccattatttt tttctatttc aaaaactttt ttatctaaaa
     2281 attcattcaa attttttgta ttaataatga cttttttaat attttctaaa agtagttttt
     2341 tagcactctt acgacacaac tctgccactt tgcgacgcaa atttctaact cctgattcac
     2401 gagtataatc gctaatgatt agctctatag tttcatcatc aataaataat tcattggatt
     2461 ttaagccatg ttttttaagc tcatctggaa ttaaatattt tttc
//
LOCUS       DAEBKH010000158         2484 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.159, whole genome shotgun sequence.
ACCESSION   DAEBKH010000158 DAEBKH010000000
VERSION     DAEBKH010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2484)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2484)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2484
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.159"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            64..534
                     /locus_tag="KIL20_001583"
     CDS             64..534
                     /locus_tag="KIL20_001583"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HBD2721594.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGATININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYFEEKGYI"
     gene            536..1738
                     /locus_tag="KIL20_001584"
     CDS             536..1738
                     /locus_tag="KIL20_001584"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HBD2721595.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSAQQGNQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGYPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNVEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            1739..2275
                     /locus_tag="KIL20_001585"
     CDS             1739..2275
                     /locus_tag="KIL20_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HBD2721596.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKAARPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSAFDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSRVQLG"
     gene            2281..>2484
                     /locus_tag="KIL20_001586"
     CDS             2281..>2484
                     /locus_tag="KIL20_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HBD2721597.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFMPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRI"
BASE COUNT          881 a          276 c          508 g          819 t
ORIGIN      
        1 ttttaataaa aatttgattt gatttaggtt aaaattatat ccttgaaatt aaggaaaaat
       61 attgtggaaa acgagaaaaa ttatagacca aatgttgcag ctattgtttt atcaagttct
      121 tatccttttg agtgtaagat ttttatagct aaaagaagtg atatggataa tatttggcaa
      181 tttccacaag gaggtattga taaaggtgaa agtgtcaaaa acgctttatt tagagaacta
      241 aaagaagaaa taggtactga tgaggttgaa atcattgctg agtatccaga atggttgagt
      301 tatgattttc cgagtaaaat tgttaaaaaa atgtatcctt atgatgggca gattcaaaaa
      361 tattttttag tgcgtttaaa gcacggtgct acaatcaata tcaataccaa acatcctgaa
      421 tttgatgatt atcaatttgt gagtgttaaa caaatttttg aaatgattaa tcatttcaaa
      481 aaaaatattt atgttaaagt gatcaaatat tttgaagaga aaggttatat ctaaaatgct
      541 tatagttcaa aaatatggtg gaacaagcgt tggaacactt gagcgtattg aagcagtagc
      601 caatagggtt atccaaagtg cgcaacaggg taatcaactt gttgttgtag tatctgcaat
      661 gagtggggtg acaaatactc ttattgagca agctgaatat tttagtaaaa ctcctaatgg
      721 taaagatatg gatatgcttt taagcagtgg agagcgtgta acaagtgctt tactttctat
      781 tgctttaaat gaaaagggtt atcctgctat atcattttct gggagaaaag cgggaattat
      841 tacagatagt gtttttacaa aggcaagaat tcatcatatt gatacaaaag cgataaaatc
      901 agaacttcaa aatggtaaaa tagtcgttat agcaggtttt caaggtgtag atgaggaagg
      961 taatgtaact accttagggc gtggtggaag cgacttaagt gctgtggcgg tagcaggtgc
     1021 cttaaatgcg gatttgtgtg aaatttatac cgatgttgat ggggtttata caacagatcc
     1081 aagaattgaa ccaaaggcaa agaaattgga taaaatttct tatgaagaaa tgcttgaact
     1141 tgcaagtttg ggtgcaaaag ttttgcaaaa tcgctctgta gagcttgcaa aaaaattaaa
     1201 tgttaactta gtaactagaa gtagttttaa caataacgaa ggaacaatga taacaaagga
     1261 agatggaatg gaacaagctt tagtaagtgg tattgctttg gataaaaatc aagcaagagt
     1321 aactttaaga aatgtagaag ataagcctgg aatcgcagct gaaatttttt ctgttttagc
     1381 aaatgaaaat attaatgtag atatgattat acaaaatgtt ggagttgatg gcgctacaaa
     1441 tttgggtttt acggttcctc agaatgaact tgaattagct aaaaatgcta tgcaaaaaat
     1501 tttaagctca aaaacaacta tagaaagtga tagtgctgta gtaaaagttt ctatagtcgg
     1561 cgtaggcatg aaatcacatt caggagtggc aagtaaagct tttaaagctt tagctgatga
     1621 ggggattaat atcggtatga tttctactag tgaaataaaa atttcaatga tagttcatga
     1681 aaaatacgga gaacttgcag ttagagcact acatgagtgc tacggacttg ataaataaat
     1741 gagtgatttt ttaagtttta ctcttgaaaa tattcgcaat ggcggagctt ttatggcatg
     1801 gttggagtcg cgtcgtttag aatgggctcc tttgatggct gcaagactta aatatctttt
     1861 agagggacgc acttttgtct taatgtgcga tgaacaaaga tcttggtatg aagagtattt
     1921 tttaaaaaat ataaattcaa aagccgctcg tcccatgctt ccttttgtgt cgttaaattc
     1981 tttatgcaag aagaaagtac aaagttcaga agatatagct ttacttaatg acttgcttga
     2041 catttctttt cctaatggtt atgtgtattt ttatatagga agtgcttttg ataataaatc
     2101 tttaatcgct aaatcaagag atgatagttt attgtggctt tttgatgagc agttacaaga
     2161 tagtttttat ttaaattcta aagataaaga cttggatatc aagcttatta gtttatatca
     2221 actttttgat gtaagtttgg atgcaatatt attttccagg gtgcaattag gataaatatt
     2281 ttgtttatta gtaagattat tatcagtgaa gattttttag gtattaaaga agaaatgatt
     2341 aataattttg gtattaaaaa attaagattt tttatgccac aaaatgaatt tttacttgat
     2401 gatgcaagag cagttgaaaa agaaagctat atcgcagaaa ccgaagaaaa aattattgtt
     2461 ttaatggcgg attcttatag gata
//
LOCUS       DAEBKH010000159         2440 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.160, whole genome shotgun sequence.
ACCESSION   DAEBKH010000159 DAEBKH010000000
VERSION     DAEBKH010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2440)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2440)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2440
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.160"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..732)
                     /locus_tag="KIL20_001587"
     CDS             complement(<1..732)
                     /locus_tag="KIL20_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP:phosphoglutamine cytidylyltransferase"
                     /protein_id="HBD2721598.1"
                     /translation="MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSA
                     GINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFILKCIEEKQ
                     DLIISYADIVYFQDCVQKLINAKEELAIVVDKSWRKLWNKRFANPLEDAETLKMTNGY
                     IIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSF
                     LQALIEKYNNAKAVEIDGNWCEIDFM"
     gene            complement(734..1336)
                     /locus_tag="KIL20_001588"
     CDS             complement(734..1336)
                     /locus_tag="KIL20_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HBD2721599.1"
                     /translation="MFIGITQRLIYNESYHEERECLALDWGKLFNKDLFKNFTPLPLS
                     YEIDFSHYKHLIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLKEKIPLLGICR
                     GAQMIAHYFNSHISPCENHIGKHEVFFSKEKFISNSFHNFAIEKLGEDLVELCLAKDN
                     TIEAFKHKYENIFGIMWHIERENGLNNIQILKEWFSLIKE"
     gene            complement(1327..>2440)
                     /locus_tag="KIL20_001589"
     CDS             complement(1327..>2440)
                     /locus_tag="KIL20_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721600.1"
                     /translation="DIQKAYKLKERYDGIINSNFSLIDKIYWLIEECKRYGTLPFAGV
                     ARAAFVAMQLLNSLVEIDFITKEEKDDFLNSLNTVSKNLSKQTNHLNFHNKDQFLKDF
                     GHLRAGTYNILSPRYDEDFELYFDVDQKDSKVYLQDKAFVFSEEKTKALNALLREHGL
                     EINACEFFDFLKQAIEGRELVKFEFTRLLSKAIVYIEELGKYYGIEKEDLAHLDIKSI
                     LNLYSSLYSINPKEQFVEEINRNKKEYELTQAIKLPSLLCNADEIFSFYNHSIIPNFI
                     TQKSITAFTAKENDKDLEGKIVLIYAADPGYDYLFTKNIAGLITCYGGANSHMAIRAS
                     ELGMPAVIGVGEENFEKYLKAKKINIECESEQIFCL"
BASE COUNT          843 a          417 c          262 g          918 t
ORIGIN      
        1 cataaaatca atttcacacc aattgccatc aatttccact gcttttgcgt tgttgtattt
       61 ttcaatcaaa gcctgcaaaa aacttgtcat atacatattt tcaaaatttt tattatcata
      121 taaaatatct cggtcaagca tttcataaaa agcaataact tcagaaagaa attgataaga
      181 aaatttaaaa agtcctatat attgagcttc tatctcatca taggcattag ctttttttcc
      241 aagttctata atataaccat ttgtcatctt taatgtttca gcatcttcta aaggatttgc
      301 aaagcgtttg ttccaaagct tacgccaaga cttatcaact actatagcaa gttcttcttt
      361 ggcatttata agcttttgca cgcaatcttg aaaataaaca atatccgcat aagaaataat
      421 caaatcttgt ttttcttcga tgcattttaa tataaaatct ttagcgcaaa aaaaagtatg
      481 aaccatattg gttttatcat attttgaatt aataaaaaaa tgctcaatat catatttatt
      541 aagataattt tttagcacat cgtttaaata tccacccaca acagctattt catttatacc
      601 tgctgatttt aaagcttcga tttcataatc tattattttt ttattcttat actcaaccat
      661 acactttggt tgatcttttg ttaaaggcat cagccttgat ccaaaacctg ctgctaagat
      721 aattgcattc atattattcc ttgattaaac taaaccactc ttttaaaatt tgaatattat
      781 taagcccatt ttctctttca atatgccaca ttataccaaa aatattttca tacttatgtt
      841 taaaagcttc tatggtatta tcttttgcta agcaaagttc tacaagatct tcgcctaatt
      901 tttcaatagc aaaattatga aaagaattac ttataaattt ttcttttgag aaaaatactt
      961 catgtttgcc tatatgattt tcacaaggac ttatatggct gttaaaataa tgagctatca
     1021 tctgagctcc tctgcaaatt cctaaaagtg gtattttttc ttttaaacaa atttctataa
     1081 cttgcttttc atataaatct ctctttttag ataagacatt aggactataa aaacttaaat
     1141 cattaccacc gcttaatatc acagctttta ttagatgttt ataatgagaa aaatctattt
     1201 catagctaag aggaagagga gtaaaatttt taaataaatc tttattaaat aattttcccc
     1261 aatccaaagc caaacattct ctttcttcat gataactttc gttgtaaata agcctttgag
     1321 taatacctat aaacaaaata tttgctcact ttcacattct atatttattt ttttagcttt
     1381 taaatatttt tcaaaatttt cttctccaac tcctataaca gcaggcattc caagttctga
     1441 ggcacgaatg gccatatgtg aattagcacc cccataacat gtaataagtc ctgctatatt
     1501 ttttgtaaat aaataatcat atccaggatc tgctgcataa attaaaacaa tctttccttc
     1561 taaatcttta tcattttcct tcgccgtaaa tgcagtaatg ctcttttgtg taataaaatt
     1621 tggaataata ctatgattat aaaaagaaaa aatttcatcg gcattgcaaa gcaaagaagg
     1681 aagttttata gcttgtgtaa gttcatattc ttttttattg cgattaattt cttctacaaa
     1741 ctgctctttt ggatttatag aataaagact agaataaaga tttaaaatgc tttttatatc
     1801 aagatgagcc aaatcttctt tttcaatacc ataatatttg cctaattctt ctatataaac
     1861 tatagcctta gaaagcaatc tagtgaattc aaatttaacg agctctctac cctcgatagc
     1921 ctgctttaaa aaatcaaaaa attcacaagc attaatctct agtccatgtt ctctaagtaa
     1981 agcatttaaa gcttttgtct tttcttctga aaaaacaaaa gctttatctt gcaaataaac
     2041 tttactatct ttttgatcca catcaaaata aagttcaaaa tcttcatcat atcttggaga
     2101 taaaatatta taagttcctg ctcttaagtg tccaaaatct ttcaaaaatt gatctttgtt
     2161 gtgaaaatta agatggtttg tttgtttact taaattttta ctcactgtat tgagtgaatt
     2221 taaaaaatca tctttttcct ctttggttat aaaatcaatc tcaactaaag aatttaaaag
     2281 ttgcattgct acaaatgcag ccctagccac ccccgcaaaa ggcagagttc cataacgttt
     2341 acattcttca ataagccaat aaattttatc aattaaagaa aaattagaat taataatgcc
     2401 atcatatctt tcttttagct tataagcttt ttgtatgtct
//
LOCUS       DAEBKH010000160         2434 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.161, whole genome shotgun sequence.
ACCESSION   DAEBKH010000160 DAEBKH010000000
VERSION     DAEBKH010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.161"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            67..978
                     /locus_tag="KIL20_001590"
     CDS             67..978
                     /locus_tag="KIL20_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HBD2721601.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFDFSLIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGIFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLFFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLD
                     SNLAVSAVAFGVLFAFISMPILIWALL"
     gene            complement(986..>2434)
                     /locus_tag="KIL20_001591"
     CDS             complement(986..>2434)
                     /locus_tag="KIL20_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HBD2721602.1"
                     /translation="IGILLPASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNA
                     QISQIYTSKIFLEKLANKGINLNFDTNIHLIYFEDIVEDFKMQKTKIFSMMLAVSIIP
                     SFILKSIFTPLKNNLAIAAILFSSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDV
                     ILSSLPPFHAFGLTVTTILPLLEGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFL
                     GIYARNKKLDALMFESLRIVVSGAEKLKNEVRTAFEMKFKKSIFEGYGATETTPVASV
                     NLPNRFDADYWLIHRANKEGSVGMPLPGTAVHIVDPNNYENLKTNEDGLILIGGHQVM
                     VGYLNDKEKTDEVIKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGA
                     IEEEIAKFIDTEVVKFCATSLEDEKKGEQIALLIECNNEIFERVCEAIKNSNIPTLFK
                     PRYYFQIEKIPLLGSGKVDLKKVKELAKNLAL"
BASE COUNT          727 a          394 c          350 g          963 t
ORIGIN      
        1 ttttttaagt ataaagaata taattctatc cgttttcaaa aaccatccct taaaaaggat
       61 tattcaatgt ttgtttttat accattattt acaattttta ttttacttgc aggcggatat
      121 tttgccaaaa gaattggcgt tttaaagcaa aaacaagcta ggactttttt agattttgct
      181 attatttttg ctttaccttg tttgattttc gataaagcat atcatttaaa ttttgatttt
      241 tcattgatta tttttatttt tattggattg tttagctgta tactagcagc tttttttgct
      301 attcttattg gaaaagtttt tcatttttct aaagtaactt tagtcagtat gtttttgctt
      361 tcttgttttg gaaatactat atttgtgggt atgcctattg ttgctggtat atttaatgac
      421 ccacaattta gcgctgaagt tatattttac gatgctttag ccacaacttt acctatatca
      481 ctttttggac cttttatact ttctttggga aatggagaaa aagtcagttt acttgctaat
      541 gttaaaaaaa ttcttagttt tccacctttt ttagctttgc tttttggttt tttgtgcaaa
      601 ttaattactt tacctgaatt tattttctct cctattcgtt tatttggtgc ctctgcaacc
      661 cctgttgcac tttttgctat aggtttagga cttggcttta tggcgattaa aacctcttac
      721 aaacctacaa tagttgtcat ctttgctaaa atgattttag ctcctttatt ttttgtattt
      781 tgtttaaaaa tatttaattt agaattaaaa gattctacta tcgttgctat tatagaaagt
      841 gcagctccta ctatgacttt agcaggagct atggtaatga aagctaaact agatagtaat
      901 ttagccgtaa gcgctgtagc ctttggagtt ctttttgctt ttatttctat gccaatttta
      961 atttgggctt tgttgtaagc tcaaattata gggctaaatt tttagctaat tctttaactt
     1021 ttttaagatc aacttttcct gaacctagga ggggaatttt ttctatttga aaataatatc
     1081 taggtttaaa aagtgtaggt atattagaat tttttatagc ttcacatact ctttcaaaaa
     1141 tttcattatt acattctatg agtaaagcaa tttgttcccc ttttttctca tcttctaaag
     1201 atgtggcaca aaatttaacc acttcagtgt ctataaattt ggcaatttct tcttctattg
     1261 cacctaaaga aatcatctct ccgccaattt ttgcaaagcg agaataacga tcgacaatat
     1321 ataaaaaacc atcttcatct aaatgccctt tatctcccgt gttgtaccat cttataccat
     1381 caatttcttt aatcacttca tcggtttttt ctttgtcatt aagatagcct accataactt
     1441 gatgaccgcc tataagtatg agtccatctt catttgtttt taaattttca taattatttg
     1501 gatcaacaat atgcactgca gttccaggta gaggcattcc tacgcttcct tctttattgg
     1561 cacgatgtat aagccaataa tccgcatcaa aacgatttgg taaatttaca ctcgccacag
     1621 gcgtggtttc cgtagccccg taaccttcaa aaatgctttt tttaaacttc atttcaaaag
     1681 cagttcttac ttcatttttt agtttttcag cgcccgatac aactattctt aaactttcaa
     1741 acattaaagc atcaagcttt ttatttcttg cataaattcc taaaaaggtt gaagttccac
     1801 acataatagt gacattattt ttagcaacag ctttggcaac ccctaaggca tcggttggat
     1861 ctgaaaaagt gatgctttta ataccttcaa gcaaaggcaa aatcgtagtt acggtaagtc
     1921 caaaagcatg aaaaggtggc aaagatgaga gaatgacatc attatttctt gtgcaaagca
     1981 catcagaaat ttgtgctata ttgcttaaaa tattacggtt attgagcata acaccttttg
     2041 gagaaccctc acttccgcta ctaaataaaa tagctgcgat ggcaagattg ttttttaaag
     2101 gagtgaagat gcttttgagt ataaaactag gtataatact aactgctaac atcatgctaa
     2161 aaattttagt tttttgcatt ttaaaatctt ctacaatatc ttcaaaataa attaaatgta
     2221 tatttgtatc gaaatttagg tttatacctt tatttgctaa tttttctaaa aaaattttag
     2281 aagtataaat ttgtgaaatt tgcgcatttt ttatagctgc ttttagagct ttttctccag
     2341 cagtaaaatt aagatttact gcaatttttt ctgcgattaa aacagataga ttggttaaag
     2401 aacttgcaaa agaagcaggt aataaaattc ctat
//
LOCUS       DAEBKH010000161         2327 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.162, whole genome shotgun sequence.
ACCESSION   DAEBKH010000161 DAEBKH010000000
VERSION     DAEBKH010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.162"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            16..1338
                     /locus_tag="KIL20_001592"
     CDS             16..1338
                     /locus_tag="KIL20_001592"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HBD2721603.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVAKLKENFSQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKDIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYNKEIIS
                     SRGELVEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAISENTALILKTHKSNF
                     ALMGFHSEVNIKDLHELAKEKGLLSYYDLGSGWCENLNEKLIKNEPKIKKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEKKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILIINQMENL"
     gene            1335..>2327
                     /locus_tag="KIL20_001593"
     CDS             1335..>2327
                     /locus_tag="KIL20_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HBD2721604.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSICLFVVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENNEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVI"
BASE COUNT          938 a          276 c          376 g          737 t
ORIGIN      
        1 ttcttaaggc ttaagatgaa caaatttaga acttttccac aaattaacac tcttattgaa
       61 gatgagagtt taaaatccta tcctttttat atcaaagcat ttttttgtaa aaaagttgtc
      121 gcaaaactaa aagaaaattt ttcccaagat gaaatttcta aagataaact acttttagaa
      181 atcaaaaaag aaatcaaaac tttttaccgc aaagatttac aaagtgtgat taatgcaagc
      241 ggagtggtta tacatacaaa ccttggtaga agtgtaatcc atgaagaact ttatgaagcg
      301 tgtaaagata tcatttgtaa ttattctaat gtagagtttg atttagaaaa tggaaaaaga
      361 ggctctcgct atgctttggt gctagaaaaa cttaaaatgc tttttgaatg cgaagatgct
      421 ttagtggtca ataacaacgc tgcggcagtt tttttagtac ttaattctct ttgttacaat
      481 aaagaaatca taagctcaag aggagaactt gtagaaattg gtggcagttt tcgcgtgcct
      541 gaagtaataa aagctgcagg tgtaaagctt tgcgaagttg gaactagcaa caaaacacac
      601 ttaaaagact atgaacaagc tatcagtgaa aataccgctc taattttaaa aacccacaag
      661 tctaatttcg ctcttatggg ttttcacagt gaagtaaata taaaagatct acatgaacta
      721 gcaaaagaaa aagggctttt gagttattat gatctaggtt ctggctggtg tgaaaattta
      781 aatgaaaaac tgattaaaaa tgaacctaaa atcaaaaaac tcgtacaaga atgtgatatt
      841 ttaagtttta gtggagataa actttttggt agtgtgcaag caggcattat acttggaaaa
      901 aaagaactca tagaaaaact taaacaaaat caacttttaa gaatgctaag agtggataaa
      961 ttaactctat cttttttaaa cgaaagctta aaagcttatt tgcaaaaaga ttatgaaaaa
     1021 attattacct taaaactttt aaatgatgac ttatccttta tagaaaaaaa agctttaaga
     1081 gtgcaaaaag aattaaaatt tcaaacccag cttaaaaaaa gcaaaagttt agtaggagga
     1141 ggttctatgc ctgataaaag tttagatact tatatactga cttttcaagg agatgcttta
     1201 aaactacaaa ctcgatttag aaaagaaaat atcataggac gcattgaaaa tgatgaattt
     1261 gttcttgatt ttagaactat acgagaaaat gaacttcaaa aacttattct tataatcaat
     1321 caaatggaaa acttatgaaa tctgttatta taggaaccgc aggacatatt gatcatggaa
     1381 aaacttcact cattaaagct ttaaatggtt ttgaaggcga tagcttaaaa gaagaacaag
     1441 aaagacaaat caccattaat ttaagttttt caaatcttaa attaaaagat aaaaacattt
     1501 cttttatcga tgttccaggg cataaagatt tggttaaaac tatggtaagt ggagcttttg
     1561 gctttagtat ttgtttattt gtcgtagata ttaacgaggg tttaaaagaa caaagtttag
     1621 aacatttaga aattttaaaa attcttgata ttaaaaatat cattttagtg cttagcaaat
     1681 gtgatctttg tgaaaatata gagcaaaaaa gtgtagaaat tttagaagag ttaaaaaatt
     1741 tagattatcc cattttaaaa gtatttcaca ccagtataaa aaataatcaa ggcatagaag
     1801 aattaaaaaa ttatctttat accatagaaa acaaagaaaa caatgaagaa ctgatttttc
     1861 attattatat cgatagagtt ttttctctaa aaggcatagg aactgtcgtc acaggtagcc
     1921 tgaatgaagg aagtatcact ttaaatgaaa aaatcatctg tttagacact caaaaagaac
     1981 tcattgttaa aaatatacaa aatcacgata ctaatttaga gcaaatcaaa gcttgtaacc
     2041 gtgtggcttt aagtttaaat tgtgattata aagagttgaa aaaaggttat ttgctaagta
     2101 aaaaaggtta ttttaaagcc tttaaagaat gcgatgcttt agttaaagca aaaaatttac
     2161 aaaatagcaa aatgattttt tgcgtgggtt caagacaaat agaatgcaaa ataaatatat
     2221 taaaaaaact agaaaatgat gaattttttg tgcattttag ttttgataaa aatgtatttt
     2281 taagttttga tgaggctttt attttattac aaaacaatcg tgttata
//
LOCUS       DAEBKH010000162         2326 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.163, whole genome shotgun sequence.
ACCESSION   DAEBKH010000162 DAEBKH010000000
VERSION     DAEBKH010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.163"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..1287
                     /locus_tag="KIL20_001594"
     CDS             <1..1287
                     /locus_tag="KIL20_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HBD2721605.1"
                     /translation="IFEKNPPQILMPDVVYTDLKKPILVHVKDDESSIKNVQIILHKD
                     DNTSAMVIADEKISNLKDITLQVALPKFGYKENVKSFVLEVIAKDSSFWNFFSGNEAR
                     KQIAVLVDNTAPKINIISNSYQIEQGGAGAVVFKADDANLDKVYIETNKGRIFKATPY
                     VKEGYYAALIAWDARDEEFRAFVIATDKVGNISKERIRYYFVNRKYRVSNINLTDKFL
                     DGKIENLANQYAPKDNNLNRYEKFKFVNETLRNSNEELIHEITSKVPEEKIDNFDLNL
                     FLPLKNGMKVADFADHRYYSYNGQFVSDSYHMGLDLASVAQAPIISNNAGKVVFAAEN
                     GIYGLNLIVYHGFGVYSLYGHCSSKNVDLDEMINKQSIIGKTGTSGLALGDHLHFGVL
                     VQGVETRPEQWQDKKWIENNIYNVLNDGKKIILGKN"
     gene            1287..2171
                     /locus_tag="KIL20_001595"
     CDS             1287..2171
                     /locus_tag="KIL20_001595"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HBD2721606.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDDRGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYISYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            2210..>2326
                     /locus_tag="KIL20_001596"
     CDS             2210..>2326
                     /locus_tag="KIL20_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HBD2721607.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTS"
BASE COUNT          858 a          272 c          439 g          757 t
ORIGIN      
        1 atttttgaaa aaaatcctcc tcaaatttta atgccagatg ttgtatatac tgatcttaaa
       61 aaacctattt tagtgcatgt taaagatgat gaaagttcta tcaaaaatgt acaaattata
      121 ttgcataaag acgacaatac tagtgcaatg gttatagcag atgaaaagat ttctaattta
      181 aaagatatta ccttacaagt tgctttgcca aaatttggtt acaaagaaaa tgtaaaatct
      241 tttgttttgg aggtgatagc taaagattct agtttttgga atttttttag tggcaatgaa
      301 gcaagaaaac aaattgcggt attagtagat aatacggctc caaaaatcaa tatcataagc
      361 aattcttacc aaatcgagca aggcggtgcc ggggctgttg tttttaaggc cgatgatgct
      421 aatttagata aggtgtatat agaaacaaat aaaggtagaa tctttaaagc cacaccttat
      481 gtaaaagaag ggtattatgc ggctttgatt gcttgggatg caagagatga ggaatttcgc
      541 gcatttgtta tcgctacgga taaagtggga aatatttcaa aagaacgtat aaggtattat
      601 tttgttaatc gtaaatatcg tgtttcaaat atcaatctaa cggataaatt tttagatgga
      661 aagattgaga atttagcaaa tcaatacgct ccaaaagata ataatctcaa tcgttatgaa
      721 aaatttaagt ttgtcaatga aactttaaga aatagcaatg aagaacttat ccatgaaatc
      781 acttcaaaag tacctgagga aaaaattgat aattttgatt tgaatttatt tttacctctt
      841 aaaaatggta tgaaagtagc ggattttgct gatcataggt attattctta taatgggcaa
      901 tttgtgagtg attcttatca tatggggctt gatctagcaa gcgtagcaca agctcctatc
      961 ataagcaata acgcaggcaa ggttgttttt gctgctgaaa atggaattta tggtttaaat
     1021 ttaattgttt atcatggttt tggagtatat agtctttatg ggcactgttc ttctaaaaat
     1081 gttgatttag atgaaatgat taataaacaa agcattatag gcaaaacagg aacaagtggt
     1141 ttagccttag gtgatcattt gcattttgga gttttagttc aaggagttga aacgcgtcct
     1201 gaacaatggc aagataaaaa atggatagaa aataatattt acaatgtttt aaatgatggt
     1261 aaaaagataa ttttaggaaa aaattaatga aacaattaac tttagcaaaa actgtcaaag
     1321 gcgtaggtat aggacttcat aagggtgaac ccatagaaat tactttagag cctttagaag
     1381 caaatagtgg tatagtattt tttagaagcg atcttaatgc aagctataag gcaagtcctg
     1441 aaaatgtgat caatactcaa atggcaactg ttttaggaga cgatcgtgga tttatttcta
     1501 caatagagca tttaatgagt gcgattaatg cttatggaat cgataatgta cgcatagttt
     1561 taaatgcaaa tgaagctcct gttatggatg gatcaagtat tagtttttgt atgatgcttg
     1621 atgaagcagg ggtaaaagaa cttgatgcac ctaaaaaaat tatggtaatt aaaaagccta
     1681 tagaagtaag agatggtaat aaatttgtgc gtttaactcc tactaaagaa ccccgtatta
     1741 attacacaat taaatttgac aatgctgtta taggtgaaca aagttacaat tttgaattca
     1801 gcaaaaaaaa ttatatagaa aacatagcaa gggctagaac ttttggtttt ttaaaagatg
     1861 ttcaagctct taggagtatg aatttagcac taggtggaag tttagaaaat actatagtgg
     1921 tagatgaaaa tcgtatttta aatcctgagg gtttgcgttt caaagatgag tttgtaagac
     1981 ataaaatttt agatgcaatt ggagatttaa ccttacttgg atatcgtgtt tttggggatt
     2041 atatttcata tgctgggagt catcatttaa atcatttact tactaaagaa gttttaaaag
     2101 ataaagatgc ttatgaaatt gtaagccttg aaaaaacaac ccaaaaagct tatgaaaagg
     2161 tatttgcata aaaacctctc ttttgcttaa tgctttatct aagcctttaa tgatcggaat
     2221 ttatcaagat gataaactta taaaaactta taaaagtgaa gaaaaagcaa gcgaattttt
     2281 accaaaaatt ttagatgaat tgcttaaaga atatgatttt acaagt
//
LOCUS       DAEBKH010000163         2287 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.164, whole genome shotgun sequence.
ACCESSION   DAEBKH010000163 DAEBKH010000000
VERSION     DAEBKH010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.164"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..307
                     /locus_tag="KIL20_001597"
     CDS             <1..307
                     /locus_tag="KIL20_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HBD2721608.1"
                     /translation="DLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFVQSID
                     ALSQNNLTQKHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCKKNQ"
     gene            228..1781
                     /gene="rny"
                     /locus_tag="KIL20_001598"
     CDS             228..1781
                     /gene="rny"
                     /locus_tag="KIL20_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HBD2721609.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKIQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQKHIQDLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            1790..>2287
                     /locus_tag="KIL20_001599"
     CDS             1790..>2287
                     /locus_tag="KIL20_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HBD2721610.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKLALAMMKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFAAYTFGYVIEAIFDKLSLY
                     PYAAPL"
BASE COUNT          872 a          328 c          412 g          675 t
ORIGIN      
        1 tgatttagct attgtgcctg taattggcgt cgataaaaat ttaaaaagaa taggacatgg
       61 gcaaggtttt tatgatagat tttttgaaaa tttaaattac aaacctcata taatatttgt
      121 ccaaagtata gatgctttaa gtcaaaataa tctaacacaa aagcatgata tttcaggaaa
      181 attatacata aacccttata aaaaatatta caagaaagaa agaaaaaatg atagaatcac
      241 ttatcgcact tatagccgct atagtcggac tcggtatagg atatttagtt gcaaaaaaaa
      301 tcaatgatgc caaatatgaa attttcgtag aacaagctaa agccaaagcc aaagctatag
      361 aatacgaagc ggagcttatt ttaaaagatg caaaaaattc aattcttaat gcagaattag
      421 aagttaaaaa aaaatacgaa gaaaaaactc acaaaattca aaaagatttt aatcaaaaat
      481 ttgatgatct ttctaaaaaa gaacaaaaac ttcagcaaga agaagaaaaa ctaaaagaag
      541 ataaagaata cctttgcaag tcacaaaaac acattcaaga cttacaatct gatgttgata
      601 aattaaaaaa taaatatcaa gaaaaacttg acgatgtttt aaaaatttta gaacattcta
      661 caggacttac gcaaaatgaa gccaaagaaa tcattcttaa aaaagtagaa gaaaattctc
      721 gcgagcaaat tgcacatata gtaagaaaat atgaagaaga agcaaaaaat gaagccaaaa
      781 gaaaagctaa cttcatcatt gctcaagcta cttctcgttt tgcaggtgaa tttgcagctg
      841 aaagacttat caatgttatt aacattaaaa acgatgaact taaaggacgt atcattggta
      901 aagaagggcg caatgttaaa accttagaaa tggttttagg tgttgatatt atcatcgatg
      961 atacaccagg tgctattata gtaagttgtt ttaatcttta tcgccgtgct attgctacaa
     1021 aagttataga acttttagtt gaagatggca gaattcaacc cgcgcgcata gaagaaattc
     1081 acgaaaaagt gtgtaaagaa tttgatagtg ctattctaga agaaggcgaa accatagtta
     1141 tggatctagg tttaaataaa atacaccctg aaattgtaaa actcatagga aaactcaaat
     1201 accgagcaag ctatggacaa aacgctttag cacattcttt ggaagtggct caccttgcag
     1261 gaatcattgc tgctgagtgt ggtggggatg agaatttagc acgtcgtgcg ggaattttac
     1321 atgatatagg aaaagcatta acccacgatt ttgaaggatc tcatgtggat ttaggtgcag
     1381 aactttgcaa acgctataaa gagcatcctg tagtaatcaa tgctatttac gcacatcatg
     1441 gacacgaaga agctacaagc atagaatcag cagctgtttg tgcagcagat actttaagtg
     1501 ctgcacgacc tggagctaga agagaagtat tagaagcttt cttaaaaaga gtcagtgagc
     1561 tagaagatat cgctaaaagt aaagaaggaa ttaaaaatgc ctatgcaatc aatgccggaa
     1621 gagaaattcg cgtcatagcc aatgctcagc ttgttaatga tgatgaaagt gtacttttgg
     1681 ctaaggaaat agcagctgaa attcaagaaa aaatgcaata tcctggtgaa attaaagtca
     1741 atgttatacg tgaacttaga gctgtagaat acgctaaata aggtttatta tgcaagatat
     1801 gattgatact ttaataaaat atggttatat tgttttattc ttttactctt tagggggcgg
     1861 aatggttgga attttagccg caggagtttt aagttctcaa ggaaaaatgg atcttagttt
     1921 ttgcattgct cttgctttta ttgctaatac cataggttca actttgcttt ttatacttgg
     1981 aaaatattac aaaaaagata ttatgcctta ttttaaaaaa caccgacgca agctagccct
     2041 tgctatgatg aaaacaaaac aacacggaat tattttactt gtaactcaaa aatttattta
     2101 tggtttaaaa actttcattc ccatagctgc aggtatggca aaatataatt ttattaaatt
     2161 ttttattatc aatactctag ctagtttggc atgggctatt gttctaggtt ttgctgctta
     2221 tacttttggg tatgttattg aagcaatttt tgataaactg agtttatatc cttatgccgc
     2281 tccttta
//
LOCUS       DAEBKH010000164         2279 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.165, whole genome shotgun sequence.
ACCESSION   DAEBKH010000164 DAEBKH010000000
VERSION     DAEBKH010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2279)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2279)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2279
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.165"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            255..551
                     /locus_tag="KIL20_001600"
     CDS             255..551
                     /locus_tag="KIL20_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HBD2721611.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            678..1577
                     /gene="cysM"
                     /locus_tag="KIL20_001601"
     CDS             678..1577
                     /gene="cysM"
                     /locus_tag="KIL20_001601"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HBD2721612.1"
                     /translation="MKVHEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPVNLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEIIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(1584..2144)
                     /locus_tag="KIL20_001602"
     CDS             complement(1584..2144)
                     /locus_tag="KIL20_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HBD2721613.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLAGKALKQINNPKAHLLFISLDPNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSITHSNMLYLIDEK
                     GHFYKEISDLNPQEILRELRIFLNSQ"
     gene            complement(2141..>2279)
                     /locus_tag="KIL20_001603"
     CDS             complement(2141..>2279)
                     /locus_tag="KIL20_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721614.1"
                     /translation="HRLNSTDYESKIVLAACVLDTMRFRVEFMDNNKPIGFYFDFELK
                     K"
BASE COUNT          845 a          273 c          371 g          790 t
ORIGIN      
        1 tttttaagta gattttgtga aattgaagat aatatttttc ttcctattat gcctaagtgt
       61 aaagaatttg ttaaatttta ttatgattta tacgagaaaa ttggtaatga aattgataat
      121 agcggagaat ttgaaagata taagaaaaaa taataaaatt ttttgaaaaa aacttaaaaa
      181 aaactgtttt ttacttgata ttgtttttta aatatgctaa aattaggcgt ttcaattaaa
      241 acaaaggagc ttttatgact aaagcagatt tcatttcatt agttgctcaa acagctgggc
      301 taacaaaaaa agacgctact actgctactg atgcagttat ttctactatt actgatgttt
      361 tggctaaagg tgatagcatt agttttattg gttttggtac tttttcaact caagaaagag
      421 ctgctagaga agctagagta ccaagcacag gaaaaacaat caaagttcct gccacaagag
      481 ttgcaaaatt taaggtaggt aaaaacctta aagaagctgt tgcaaaagca agcggcaaaa
      541 agaaaaaata aaacttcggc tagataaatt ctagccttct ttcttaatta attcagatat
      601 tttgtatctt ttatttactt tattttttta aacttttata aaactatcat tattaaacaa
      661 aaaaggatat taaaattatg aaagtacatg aaaaagtaag tgagcttata ggaaatactc
      721 ctattataca tttgaaaaaa tttggtatca atgtttttgc taaatgtgaa tttttaaatc
      781 ctagtcattc tataaaagat agagcagctt ttgaaatgat taaagatgct ttagatagta
      841 aaaaaattaa tcaagatact acaatagttg aagcaactag tggaaatact ggaatttctt
      901 tggctatgat ttgtgcagat ttgggactta aatttattgc tgtaatgcct gaatctatga
      961 gtttagaaag aagaaaaatg ataacactct ttggcgctag gttagaatta actcctgtaa
     1021 atttaggaat gaaaggagcg gttgataaag caaatgaaat attattaaat actccaaatt
     1081 cttttatggt ttctcaattt gaaaatattt caaataaaaa tgcgcatcgt aagaatacgg
     1141 ctttagaaat tttaagagat ttggataatg aacttgatat ttttgtagct ggttttggaa
     1201 ctggcggtac tattagtgga gttggggaaa tactaaaaga aaaattagaa aaagtgcata
     1261 ttgttggagt cgagcctcta aattctccat tgcttagcaa aggtgaagcg ggaagccata
     1321 aaatacaagg aataggggcg aattttatac ctgctatttt aaataaagaa attatagatg
     1381 aagtgatcac ggtaagtaat gaagatgcta taaatacagc caaagaactt gccaaaagtg
     1441 gtttaatggt aggtatatca agtggagcaa atgtatttgc cgcaagtatg ctagcaaaga
     1501 aatttccaga taaaagaatt ttaactatgc taaacgatac ggctgaaaga tacctctcaa
     1561 ctgatctttt tgcttaagta taattattga gaatttagaa aaattctaag ttctcttaaa
     1621 atttcttgtg gatttaaatc gctaatttct ttataaaaat gacctttttc atcaataaga
     1681 taaagcatat tgctatgtgt tatagaataa cccataaaag aatcatttag atctattttt
     1741 tgatattgaa cattatattg ttttgttatt ttttgaagag ttttttcatc ttttgcaatt
     1801 aaagcatctg cttttggata aaagtatcgt aaccattcgt ttgtattgct taagttatta
     1861 tctctatttg gatctaaaga aataaaaaga aggtgagcct taggattatt gatttgcttt
     1921 aaggctttgc ctgctaaact aagagttgct ggacaaacat cagggcaata agtgtatcca
     1981 aaatagataa taagcttatc tcctttaaaa tcttttaggg tggtttcctc ttttaagtct
     2041 gattttaaga taaaatcata agaattttga tgatttttaa taaaaaatat tacacctaaa
     2101 ataatggcaa ctataactat aaacaaaata atattttttt tcattttttt agctcaaaat
     2161 caaaataaaa ccctatgggt ttattattat ccataaattc taccctaaaa cgcatagtat
     2221 ctaaaacgca agcagcaaga actattttac tttcatagtc tgttgaattt aatcgatgt
//
LOCUS       DAEBKH010000165         2263 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.166, whole genome shotgun sequence.
ACCESSION   DAEBKH010000165 DAEBKH010000000
VERSION     DAEBKH010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.166"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            82..855
                     /locus_tag="KIL20_001604"
     CDS             82..855
                     /locus_tag="KIL20_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HBD2721615.1"
                     /translation="MKIKSLFIVSILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGVKIAIPNDPTNESRALDIIAKKGLVKFKDKALKTPLDIID
                     NPKKIKFVELKPAQLPRALDDVDFAVINSNYALSANLNPAKDSVFIEDKESPYVNILV
                     VRVGHENDPKIKALTQALQSDKIKQFIIEKYNGSVLPAF"
     gene            904..1674
                     /locus_tag="KIL20_001605"
     CDS             904..1674
                     /locus_tag="KIL20_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HBD2721616.1"
                     /translation="MNLFKIIILACILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     RSEDKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            1684..>2263
                     /locus_tag="KIL20_001606"
     CDS             1684..>2263
                     /locus_tag="KIL20_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     protein"
                     /protein_id="HBD2721617.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTNLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAVITTNYA"
BASE COUNT          891 a          360 c          328 g          684 t
ORIGIN      
        1 agtttttata tgcttcttcc tgatagtcag agtgaattta ttaagattaa agcaagcaca
       61 aaatgactaa aaaggaaaaa aatgaaaatc aaatctttat ttatagtaag tattttaaca
      121 ttaagtctta atgcaaatgc attagaaacc atcacagttg cagcaactcc cgtccctcat
      181 gctgaaatcc tagagcaagt aaaacctgat ttagaaaaac aaggctataa acttgaaatc
      241 aaagaattta cagattatgt tttacctaat ctagctgttg ataacggaga agccgatgca
      301 aattttttcc aacatactcc ttatttggaa gaatttaata aaaacaaagg caccaaactt
      361 atcaaagtag ccgccataca catagaacct atggctgttt actccaagaa atataaaagt
      421 ctagatgata ttaaagaagg ggttaaaatc gccattccaa atgatccaac caatgaaagt
      481 agagctttag atattattgc aaaaaaaggt ttggtaaaat ttaaagataa ggctttaaaa
      541 acacctcttg atattataga caatcctaaa aaaattaaat ttgtagaatt aaagcccgca
      601 caacttccaa gagctttaga tgatgttgat tttgctgtaa ttaattccaa ctacgctctc
      661 tctgcaaatc taaatcctgc aaaagatagc gtatttatcg aagataaaga aagcccgtat
      721 gtaaacattc ttgttgtaag agtgggacat gaaaacgatc caaaaatcaa agccttaacc
      781 caagctctac aaagtgataa aatcaaacaa tttatcatag aaaaatacaa cggatctgtt
      841 ttacctgctt tttaattttg tcccttacct ggggactttt ttcttaaata caaaggagtt
      901 tttatgaatt tatttaaaat tattatactc gcttgcattc taaatttatc tagtctattt
      961 gcacaaaaca ttactatagg agccactcca aatccttttg gtagcttact agaactaatg
     1021 aaagatgatt ttaaaaacaa agggtatgag cttaaaatag tagaattttc agactatatt
     1081 ttgcccaatc gtgcattaga ggaaaaagaa cttgatgcaa atttatatca acacaaacct
     1141 tttttagaag aatacaacct aaagaaaggt tcaaatttaa ttgcaacaac gcctgtactt
     1201 atagctccag taggagttta tagtaaaaaa atcaaaaatt tagaaaatct taaagaaggt
     1261 gctagagttg ctatacctaa tgatgccacc aatgaaagta gagctttaga gcttttagag
     1321 aaagcaaaat taatagagct taacaaaaat actctaaaaa ccccattgga cataaacaaa
     1381 aatccaaaaa aacttaaatt tatagagctt aaagctgcac aacttccaag agctttagat
     1441 gatgttgata ttgctataat taattctaat ttcgcacttg gagccggtct gaatccaagt
     1501 aaagatacta tttttaggga agataaaaat agcccttatg taaattatgt tgtggtacgc
     1561 tcagaagata aaaatagcga aaagaccaaa gtaattgatg aaattttaag aagcgataaa
     1621 tttaaagcca tcattaatga acattataaa gatatattaa tcccagcttt ttaggagtat
     1681 aacatgaata ttaaaaaaat atttttaagt gttttattta caattagcct tagttttgga
     1741 gcagataaaa ccataatcat aggtgcaaca ccaacgcctt atgctgaaat tttaaatttc
     1801 tccaaaccct tatttcaaga aaaaggttgg aagttaatag ttaaggaatt taatgactat
     1861 aatataccta atatcgcttt aaatgaaaaa gatttagatg caaatttata tcagcataaa
     1921 ccttttttag atgattttaa tacccacaaa ggaacaaatt taagttcttt aggtgctatt
     1981 gttttagttc ctatggctat atattctaac tccataaaag atataaaaga tattcctaat
     2041 ggtgctaaaa tcgctatacc taatgatgct accaatgaaa gcagagctct tgatttacta
     2101 gctaaagcaa atttaataga gtttaaaagt caaagcaccc ttaaaacccc tattgacata
     2161 agtaaaaatc caaaaaaact taaatttata gagcttaaag ccgcacaact tccaagagcc
     2221 ctaaatgata ctgatttggc tgttattacc acaaactatg ctc
//
LOCUS       DAEBKH010000166         2263 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.167, whole genome shotgun sequence.
ACCESSION   DAEBKH010000166 DAEBKH010000000
VERSION     DAEBKH010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.167"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            38..2263
                     /locus_tag="KIL20_001607"
                     /pseudo
     CDS             38..2263
                     /locus_tag="KIL20_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344364.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          859 a          347 c          318 g          739 t
ORIGIN      
        1 ccagctatta agctttttaa cttcacgggg gcggggtata gagaaatttt gttttaaact
       61 ttctattgtt accttcttaa gtatcaacgc ttttgcagcc actcaagcaa atactacaga
      121 caatcgaaat ttcaatattc cagagcatta ttttaatgat aacgaacttt atgataaaag
      181 caattctact tataaaaaac tccaaggtat aaattattat gctaagagtt ctaaacaaga
      241 tattaacaat attactttaa tttataacaa tcctaaacca aatattacaa atataaacga
      301 tttaaatttt aaacattatt tacttactcc tgatatgaga gaagatgaag ttctttcttt
      361 taaagcaagg catggtgtta atacagccga tcatagtata aaaacagtta aagtgcttcc
      421 ttttttaatc acagcaaaaa ccgatcatgc tgatgcaagt tataataaac ttatattaga
      481 acaaggagaa cttagttcgg ttttttatct taaacctaaa gatactcata taaaaaaccc
      541 tagtaattct aaaagcaatc aacgcatgaa tttcttaatg agttctacct ttactcatta
      601 tggtaatgca agctataacc aaaccatact tcaaaaagat gctcatatta gtatgggagt
      661 tgagaacact tatgatttag ccttaaatgg tgctccttat ttaatcggag ctatagccac
      721 ttatggagat tctacaaata atagtttaaa tatagaagca ggtagcagtg tagagttttt
      781 tacttcctta cctaaaaaag ataaaaatgg taataatacc tttgatgaaa gaatcactca
      841 ccttgtaggt ggtttagctt atcaaggtaa tgtaaaaaac aataaaatct ttatcaaaga
      901 tgctaatatg attatccatg gtccaagcaa agcttatgct agttcagctg ctgctcatat
      961 tagcgcaggt tatatagata gtggaacaga taaaaacttt caagccagta aaaacctttt
     1021 agacatagat ggttttaatc ttgatatgta tatgaaccat gataaacaac ccctagctta
     1081 taattctgtt ttatttgctg atttttgggg tggaaaaacc gaacaaggac aagccttaga
     1141 taatactatc aatttaaaag atattaaaaa cctaaaaaaa gataaaaaca atgagaacat
     1201 ttttgctcaa gctttgttta acttctatgc aggagcttct aataatggag aagcaaatta
     1261 taatacctta aacatagaat taaaacatcc tttagaaatc gctaataact tcttaggtta
     1321 taaccaacat tctttttatg gtggctttgc aactaaagga gctaatcata ataccattaa
     1381 cattaaaaac gatcttacca caaccgatct ttctcaaagc tataaagatg ctttaaatat
     1441 tgtagctgct agaaccttag aaggcagtgc ggattataat aaagtttata tcaataattc
     1501 tatgtcaacc ttacctgtat acatttatac agctaagaaa aacattctta ataatcaaga
     1561 cttttatcct agtggtgcta ataacaatga agtagtgatt aaagactttg cttcttttag
     1621 aaatctaact gtattaacag aagctaaaga agcctcttat aatactataa attacaacaa
     1681 tgttcaaagc attaccgatg caagtaatat agataaaggt tctaaaatca tcataagagc
     1741 tttagataaa gccaatcata ataccataga tataaaaaac tattcttcta atgcagctga
     1801 taatgcttat ttgattatgg cttacaatga agcagcttat aataaaatca ttatcaatga
     1861 tactttattt ggtgtagctt cagataaaag agaaggaatt ttaagtatta tagctggact
     1921 ttcaaacaat gcccatgata ataccttaat cataaacaat cttaatcttg atgagtataa
     1981 aaataacaat tctattttta tagctccttc agccattaca ggtttaagtg aagctaaatc
     2041 ttataataat accttatata taggcgggaa tttaaatata tttaaaaaca ctttcataga
     2101 tatattagca ggggctttag tgcattatga agatagcaat agtgcttcta atgctgtagc
     2161 tccttcagat atcagtttaa gtaaaaacaa tagactgatt taaatactaa agttgaagct
     2221 agaattatta ataactttga gcattattat cttattgtat cca
//
LOCUS       DAEBKH010000167         2214 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.168, whole genome shotgun sequence.
ACCESSION   DAEBKH010000167 DAEBKH010000000
VERSION     DAEBKH010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2214)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.168"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..298
                     /locus_tag="KIL20_001608"
     CDS             <1..298
                     /locus_tag="KIL20_001608"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="type III; catalyzes the formation of
                     (R)-4'-phosphopantothenate from (R)-pantothenate in
                     coenzyme A biosynthesis; type III pantothenate kinases are
                     not subject to feedback inhibition from coenzyme A and
                     have a high Km for ATP; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pantothenate kinase"
                     /protein_id="HBD2721618.1"
                     /translation="GIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKG
                     IYLLIKDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            417..1763
                     /locus_tag="KIL20_001609"
     CDS             417..1763
                     /locus_tag="KIL20_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HBD2721619.1"
                     /translation="MSQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKIAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVAFNQEIVHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFIDKSLFVKDAKKIVPSLKTSDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLICNYLGMEFNEDKFSSELL"
     gene            1812..>2214
                     /locus_tag="KIL20_001610"
     CDS             1812..>2214
                     /locus_tag="KIL20_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HBD2721620.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRRVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIR"
BASE COUNT          857 a          303 c          360 g          694 t
ORIGIN      
        1 aggtattgca aattataaaa aaatttatag ccatatttca ccacgattaa aaagtgaatt
       61 taacactcaa gttagtcttg atgcattccc acaaaaaacc atggatgctt taagttatgg
      121 tgtttttaaa ggaatttacc tactgataaa agatgccgct caaaataaaa agctttattt
      181 cactggtgga gatgggcaat ttttagcaaa ttatttcgat cacgcaattt atgataaact
      241 tttaatcttt cgaggaatga aaaagattat aaaagaaaat cctaatttac tttattaaaa
      301 atgttacaaa aattctcatt gatatcaaac cttaatgaaa tttaactttt tgtaaaacaa
      361 attcaattaa acttctattt agaaaaaagt ttattaaaat aaaaaaagga aaaacaatga
      421 gccaacaaga atttgatgtg cttgtcatcg gagctggaat ttcaggagca gcattatttt
      481 acgagcttgc aagatataca aatattaaaa atattgcttt gatagaaaaa tataatacag
      541 ctgcaacatt aaattctaag ggaacgagta attctcaaac cattcattgt ggagatattg
      601 aaaccaatta tactttagaa aaagcgcgaa aagtaaaaag aacagctgat atgatagtta
      661 aatatggact catgcaaaat gcgcaaaata atttcatgtt ttctcatcaa aaaatagctc
      721 tagctgttgg agatatagaa tgtgattata tgaaaaaacg ctatgaagaa tttaaagaac
      781 tttatcctta tataaaattt ttcgataaag caaaaatcaa acaaattgaa cccaaggttg
      841 ttttaggaga agattgcaat caagatagac ctgaaaatat ctgcgccatg ggtgttgaaa
      901 gcggcgaggt ttttacaact gtagattttg ggaaaatgag tataaatcta atagaacaag
      961 cccaaaaaca aaataaaaat acttttgttg cctttaatca agaaattgtt cacatagaaa
     1021 aaaaggatga tatttttata ttaaaaacct caaatcatca agaataccat gccaaaagtg
     1081 tagttgttaa tgctggggcg cactctttat atttggcgca taaaatgaat ttaggtatgg
     1141 ataagtcttg ttggcctgtt gcaggaagtt tttatttaac caaacaaaaa cttttaaatg
     1201 gcaaagttta tatggtgcaa aatcctaaac ttccatttgc agctcttcat ggagatcctg
     1261 atttgcttgc tgatatgaac actcgctttg gacctactgc acttgttatt ccaaaactag
     1321 aacgttatca tggactaaaa tcagttccag aatttttcga agcactaaaa cttgataaaa
     1381 ctgttttaaa agtaactttt aatatgttta aagatgcaac aattagaaat tacatctttt
     1441 ataattatct ttttgaacta ccttttattg ataaaagctt atttgttaaa gatgctaaaa
     1501 aaatagttcc aagtcttaaa acaagtgata tttattatgc aaagggtttt ggaggcgtaa
     1561 gaccacaagt tattgataag actaaagggg aattaatgct aggtgaagca agcatcacag
     1621 agacccctgg cattattttc aatatgactc caagtcctgg ggcaacaagt tgtctaggaa
     1681 atgctgaaag agatgcaaag cttatatgta attacctagg aatggaattt aacgaagata
     1741 aattttcttc agaattattg taatcatttt gtttctattt ttagctacaa taatttcaaa
     1801 aggagtttac catgcttaaa aaaacaaaaa ttgtagccac agtaggtcca gcaagtgaaa
     1861 aggaagaaat tctacgccaa atgattatca atggtgtaaa tgttttccgt ttaaactttt
     1921 ctcatggaac acatgagtat cataaaaaaa acttagatac cataagaaga gtagctaaag
     1981 aattgcatac tcgtattgga attttacaag acattagtgg tcctaaaatt cgtacaggtg
     2041 aacttaaaga accatttgaa ttaaaaaagg gtgatagact tgatttttat cgtgaaacaa
     2101 ttttagggga gaagattgct caaaatcatt ataaaatcag catcaatcaa aaatccattt
     2161 tagatatgtt aaaaattgat gaatatattt atctatatga tggatcaatt cgtg
//
LOCUS       DAEBKH010000168         2113 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.169, whole genome shotgun sequence.
ACCESSION   DAEBKH010000168 DAEBKH010000000
VERSION     DAEBKH010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2113)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2113
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.169"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..183
                     /locus_tag="KIL20_001611"
     CDS             <1..183
                     /locus_tag="KIL20_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721621.1"
                     /translation="EIHGLLNLIKENNFEKFYIVCPRNKNFTHFIEIKHFLCDLNKTM
                     LKLVPYKISNQIIRRK"
     gene            183..674
                     /gene="fldA"
                     /locus_tag="KIL20_001612"
     CDS             183..674
                     /gene="fldA"
                     /locus_tag="KIL20_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HBD2721622.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVFNISDIDAAKMNSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWVEQIKP
                     YFA"
     gene            complement(719..1249)
                     /locus_tag="KIL20_001613"
     CDS             complement(719..1249)
                     /locus_tag="KIL20_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721623.1"
                     /translation="MSKITLILSFFIALFMSACTNATFIQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLRTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLENKIINQIVSFFYF"
     gene            complement(1255..1965)
                     /locus_tag="KIL20_001614"
     CDS             complement(1255..1965)
                     /locus_tag="KIL20_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HBD2721624.1"
                     /translation="MKKLSLILACSASLFAASSSEISDFYSKSIKAQFPNATVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDDELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDTELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            complement(2014..>2113)
                     /locus_tag="KIL20_001615"
     CDS             complement(2014..>2113)
                     /locus_tag="KIL20_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SelB C-terminal domain-containing protein"
                     /protein_id="HBD2721625.1"
                     /translation="NLSRKYAIAYLEYLDKFPQVNKEAEKRFLTNI"
BASE COUNT          692 a          266 c          341 g          814 t
ORIGIN      
        1 gaaattcatg gattattgaa tttaataaaa gaaaacaatt ttgaaaaatt ttatattgtt
       61 tgtccgcgta acaaaaattt cacacatttt attgaaataa aacatttttt gtgtgattta
      121 aacaaaacta tgttaaaatt agttccgtat aaaatatcaa atcaaattat aaggagaaaa
      181 taatgtcagt agcagtaatc tatggtagtg ctatgggaaa tacagaagga gcggctaata
      241 caattgcttc aaaacttgga attagcgatg tttttaatat ctcagatatt gatgcggcta
      301 aaatgaattc ttacgataaa ttaatttgtg gaacttcaac ttggggaagt ggtgatttac
      361 aagatgattg ggatggtttt gatttttcag ggcttagtct tggtggaaaa actgtagctg
      421 tatttggtat gggtgatagt gaaagttatt ctgacacttt ttgtggcggc atgggtaaat
      481 tagctcaaaa tttaaaagat gcaggtgcaa atttggtagg agaagtttca actgatggtt
      541 atacatttga agcaagcgat gcggttgtag atggtaaatt tgttggactt gctcttgaca
      601 atgataatca agaagatcaa actgaatcaa gaattgatgc ttgggtagaa caaatcaaac
      661 cttattttgc ttaataattc ttaaaatcaa gagtttttat actcttgatt gtcttttctt
      721 aaaaataaaa aaaactcact atttgattta taattttatt ttctaaagat aattgacagc
      781 gttctttatt tccaagataa gctgttcttg caagaagact tgttttttga gaattgtgat
      841 ttttagagtt gatttgtaaa ttaacttgca tagtatagta gttttctacc atccattctc
      901 catcactttc caaaggatca aaatcataaa aaaatcttgc tgaagttgtg attttttgag
      961 cataagaatg ctttttcata tctacaagat tgattaaaat ttcataatct gcattctctt
     1021 ttacttcttt taagcctaaa tttttaagtt ttaaagccaa atctctatcc aaagtagttc
     1081 gaagttggct aggattttga aaggaaattt taaaactttg ttgtttttgt gatctgataa
     1141 aaatgccttc attgcttgtt tgaataaagc tttgtatgaa agttgcattg gtgcaagcac
     1201 tcataaagag tgctataaaa aagcttaaaa ttaaagtaat tttagacatt aggtttattt
     1261 aataatagtt ggagtagcgc taagacctaa tgagcgatat ttttcatata aggaaaaaac
     1321 ttcttttaat tctgtatcgc ttacttttgg ataatttttg atatttgcat catagtattt
     1381 gtttaaaatt gcgatttttt ctttgtcatt ttttgctttt tttgcttctt tgtagattag
     1441 agcggatttt tcaaaagcag attttccatg tactggagtt aaaatataat taacttgata
     1501 gtttttaagt tcatcatcaa tttgagctaa atgttctcta caataaggac attcaggatc
     1561 tgaaaaaaca taaatcgcag gtttattttt atctcccaaa gctattacca tggtttcttt
     1621 ttgtgctaca gctttagcat tttttgtaaa attttctctt gcttcttgaa attttttcat
     1681 ttcatattct tgagcataag aaattcccgt tttcaagtcg ataagatcag gggtaataag
     1741 actatctttt gtaaaaagaa tgttttcttg tttttgccca tttaattcaa cgcttacaat
     1801 aacactttca aaacccgtat taccaacctt ttgacgattt gatacactaa cggtagcatt
     1861 tggaaattgt gctttaatgc tttttgaata aaaatcacta atttctgaac tacttgcagc
     1921 aaacaaagat gctgaacagg caagaattaa acttaatttt ttcatagttt ataaatcctt
     1981 taaataaatt atgtttaatt ctataatgat tttctaaatg tttgttaaaa atcttttttc
     2041 agcttctttg tttacttgag gaaatttgtc taagtattct aaataagcaa tagcatattt
     2101 tcttgaaaga ttg
//
LOCUS       DAEBKH010000169         2108 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.170, whole genome shotgun sequence.
ACCESSION   DAEBKH010000169 DAEBKH010000000
VERSION     DAEBKH010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.170"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            90..>2108
                     /locus_tag="KIL20_001616"
     CDS             90..>2108
                     /locus_tag="KIL20_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD2721626.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVIKISAIFNVIFTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIMAILAGMALF
                     SLSFESLYSSAYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWLCIIGFSFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGLIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFAKFEIN
                     VVYLFYFITLVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKESNLVCLFPEGTLSRHGQLNEFKAGFELACEYLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLILNFFIKRKSKEL"
BASE COUNT          688 a          256 c          334 g          830 t
ORIGIN      
        1 ggaattattt taaaagataa tatagataat tttcctaaaa actgataaat tcttttgcaa
       61 aataagtgct aattgacgag gtttaaataa tgcaaaaaaa atcttttttg aaaatttacg
      121 gattaattcc ttttttactt atagcattca tcaatgcttt tgtggatttg ggacataaaa
      181 ttattattca aaatactatt tataaggcct atgaaggaag tgagcagtta tttttaaatg
      241 ctatagttaa tgctttgatt ttacttcctt ttattcttat gctttctcct tcgggttttt
      301 tagcggataa atatccaaaa aatattgtaa taaaaatttc agcaattttc aatgttatat
      361 tcactttaat aatttgcatt tgttactata gcggtgcttt ttggatggct tttattttta
      421 cttttataat gggagcacaa gcagcgattt attcaccaag caaatacggt tttattaaag
      481 aactcgtagg aaaagacttt cttgctatgg gtaatggtgt aattaatgca gtaagcatta
      541 tggcaatctt agcaggaatg gctttgtttt ctttaagttt tgaaagtctt tatagttctg
      601 catataatca aacagatgaa attttaaaag aagtagcgcc tttaggaatt gtgctaattt
      661 tattttcttg tatcgaagta ttttttgcgt ggcgtttacc taagctcaaa caaacaaata
      721 aagatttagt ttttaacaaa aaagactata ttcgtggaaa acttctaata aataatctta
      781 agcttgtttt taaaaataaa actatttggc tttgtataat cggattttca tttttttggg
      841 ctatatctca actttatctt gtcagctttc ctgtctttgc taaaaatgaa ctttttatag
      901 aaaatacttt ttatgtgcaa atttcactcg ctttttctgg tataggagtg attttaggct
      961 ctttagtagc tggtaaattt tcaaaaaatt atatagaact tggacttatt ccacttggtg
     1021 cattgggtat gtttttaatg gcttttttaa tgccttattt tataagttta ttaagttata
     1081 gttttttatt tttctttttt ggattttgcg gagctctttt tatcattcct ttaaatactt
     1141 taatccaatt tcatgccaaa gaaaatgaat tggggcaaat tcttgcagga aacaattttt
     1201 ttcaaaatat tgccatgtta ggatttttac tcttagcaac tttatttgca aaatttgaaa
     1261 tcaatgtggt ttatttgttt tattttatta ctttagtaac ctttatagga agtttttata
     1321 tacttttaaa acttcccttt tctttagtgc gtatactttt aagcatagct tttttgcaac
     1381 gataccgctt acttgtagaa ggttttgaaa atataccaga aaaaggcgga gctttacttt
     1441 taggtaatca tatttctttt attgattggg ctgttgtgca aatggcaatt ccaagaaaaa
     1501 tttattttgt tatggaaaga agtatttatt ctaaatggta tattaaaatt tttcttgata
     1561 aatttggtat tattcctgta tcaagtacag gaagtaagac gagtttagaa ctgatagcaa
     1621 agcatatcaa agaaagtaat ttagtttgct tatttcctga aggtacgctt tcaagacatg
     1681 gacaattaaa tgaatttaaa gcaggatttg aattagcttg tgaatattta agcgaagatg
     1741 atggaaaaat tattcctttt tatataagag gactttgggg tagtgctttt tcaagaagcg
     1801 atgaagaatt ttcagcaaga aaccgcactt taaataaaag aaaaattgct atagcttttg
     1861 gtaaagctat gcctttgcat tctaaaaaag atgaagttaa agctaaagtt tttgaacttt
     1921 cttttatggc ttggaaatca caatgcgaag ctatgcatac tatagcaaga gcttggatag
     1981 atacagctaa aaaaaatcta aatcaaatag ctattatcga tacactagct ggagatattt
     2041 cttatagaaa aatgttaact cttagtttaa ttctgaattt ttttattaaa agaaaatcca
     2101 aagaatta
//
LOCUS       DAEBKH010000170         2059 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.171, whole genome shotgun sequence.
ACCESSION   DAEBKH010000170 DAEBKH010000000
VERSION     DAEBKH010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.171"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..612
                     /locus_tag="KIL20_001617"
     CDS             <1..612
                     /locus_tag="KIL20_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721627.1"
                     /translation="FLNYDNLLACSIFFSVRHAISATWVNDRDQFLYPNDLYENDDEF
                     KSDCLAFMLFHGQNRISAKEGINHFIPFSEKELGITKEAFESDFMYKFIKGKIKDENS
                     LFGDELVKIEFSLEAQELLKAGKELFKYYHTHSEDKGYLVNASFYDIKEFFQGRDEKG
                     KMNNPAKAKDEYYKALLSDLNANLKILAKKIEPKIYEYGFLKE"
     gene            615..1931
                     /locus_tag="KIL20_001618"
     CDS             615..1931
                     /locus_tag="KIL20_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HBD2721628.1"
                     /translation="MAKKQFSLTKLSVPIFWDLLSKYLTIIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGIGLSNIFARIVAIVALFAILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQAISIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
BASE COUNT          653 a          240 c          395 g          771 t
ORIGIN      
        1 tttttaaatt atgacaattt attagcttgt tctatattct tctcagtgcg tcatgctata
       61 agtgctactt gggtaaatga tagggatcag tttttatatc ctaatgattt atatgaaaat
      121 gatgatgagt ttaaaagtga ttgtttagct tttatgcttt ttcatggaca aaatcgcata
      181 agtgcaaaag aagggataaa tcatttcata ccttttagtg aaaaagaact aggtatcaca
      241 aaagaagctt ttgagagtga ttttatgtat aaatttataa agggcaagat aaaagatgaa
      301 aattcgcttt ttggtgatga gttagtaaag atagaattca gtcttgaagc tcaagagctc
      361 ttaaaagcag gaaaagaact ttttaagtat tatcacacac atagcgagga taaaggctat
      421 cttgtcaatg cttcgtttta tgatatcaaa gaattttttc aaggtaggga tgaaaaaggt
      481 aagatgaata accctgctaa agcaaaagat gaatattata aagctttact gagtgattta
      541 aatgcaaatt taaaaatttt agccaaaaaa atagagccaa aaatttatga atacggcttt
      601 ttaaaagaat aatcatggca aaaaaacaat tttccctaac aaaactcagt gttcctattt
      661 tttgggattt gctttcaaaa taccttacta tcatcatcaa taccgctatg gtgtcgcatt
      721 attctaattt tcttgttggt gctatgggcg ctggaaatca aattttagat ctttttatca
      781 ctattttttc atttttaagt gtgggttgta gtgtggtgat cgcacaagca attggtgcaa
      841 aagatcatgt tttagcaaga aaagtgattc atcaaagttt gttcttaaat gcacttttag
      901 gctttgtatg cggtgtgctt attttatggc atggggagta tttgctttat cttttaaaaa
      961 ttccacaaga attgctcaaa gatagcgaaa tttacttaca tatgcttgca atttgtttgt
     1021 tttttgatgc cataggtatt gttttagctg ctattgtaag ggtttataat atggcttatt
     1081 gggtcatgtt tataggtttt ttgatggata tagtggtgat ttgtggaaat tattatgttt
     1141 tgcattatac aaagtcagaa ctttttggaa tagggcttag taatattttt gctcgcattg
     1201 ttgctatagt tgctttgttt gcgatacttt tttataaact taaaattcat cttaaaatca
     1261 aagaaatgat aaaacttgaa aaagaagttt taaaaaaggt tttaaatata ggaggatttt
     1321 cagcagggga aaatcttttg tggatagtcc aatacactat agcttttgct tttgtagcaa
     1381 gcttaggtga ggcgagtttg agtgtgcaaa cgatttattt tcaaatttca atgcttatca
     1441 tgcttatagg acaagctata agcatagcta atgaaatcat agtaggtaaa ttagtcggtg
     1501 ctagatatga aaatatcgct tataaacatg cttggcgtgc tttatatttt agtgtaatag
     1561 cgagtgcttt agtggcgttt ttaaactatc tttgtcaaga ttttactatg caaattttag
     1621 ggcttaaaga agagctaaaa aatttaatga tacctttatt tgctctttca atctttcttg
     1681 aaatttcacg aacttttaat atagttatgg ttaattcctt gcgcgcaagt ggcgatgcta
     1741 agtttccatt ttttagcgga cttgttttta tgatgggggt atctttgcct gtgggttatg
     1801 tgctttgttt tcattttaat cttggaattt taggggtttg gataggattt tgtgcagatg
     1861 agtttttgcg tggaatggta aattcataca gatggaaaag taaaaaatgg caaggcaaag
     1921 ctctagttta aaatcattta tttataaaga tgagtgctat ttttattcta aaaaatgcat
     1981 aaaaacttta agattaaggc taaatgaaaa gggtgaattt gttcttagta ttccttattt
     2041 ttgcaccttt aaaagtgtt
//
LOCUS       DAEBKH010000171         1984 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.172, whole genome shotgun sequence.
ACCESSION   DAEBKH010000171 DAEBKH010000000
VERSION     DAEBKH010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1984)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1984)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1984
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.172"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..598)
                     /locus_tag="KIL20_001619"
     CDS             complement(<1..598)
                     /locus_tag="KIL20_001619"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721629.1"
                     /translation="MKDMRMQARGLILYKDFDSAIIGTSMLENTSAKEANKKLGGNWI
                     NLSLGGSTFALRAVILDYLFKHKDIKNIIYSLDIRALNELETPKDKNFISLYNDKTID
                     LFKLYLSSRFINCAIFFSKKEKCIGKDNLDTLTNWFLENKNHFGGIEYWSKEWWHDKN
                     FQNEILQAQNFQPNFDIDISHFKNYTKKYLLSFIKKYQK"
     gene            complement(746..1939)
                     /locus_tag="KIL20_001620"
     CDS             complement(746..1939)
                     /locus_tag="KIL20_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005022252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HBD2721630.1"
                     /translation="MENFNLFSKLAHLDFNIPLPHILLPLGISFFTFQQIAFLVDCYK
                     KSNIEDLLENKKVDFIDYCLFISFFPQLIAGPIVHHKEMMPQFHSLLNKEKALIDWKL
                     IAKGLFIFSIGLFKKVYIADSFASWANAGFTVVQNGNFLNIFEAWATSLSYTFQLYFD
                     FSGYCDMAIGLALFFGIALPVNFNSPYKALNIADFWRKWHITLGRFLKDYLYIPLGGN
                     RFGKFINLRNLFIVAFLSGVWHGAGWGFVIWGILHAIAMISHRIYSFWAKGKTFLNSK
                     IYKIISWFITFNFINIAWIFFRSENLQGAINLLKSMFGVIWVELPLKFKAGLLFKKIG
                     GNDTMVGFILVSFILCICFKNSINMLQDFKSSFKNSLIVMFLFYIALITLIATPYTEF
                     IYFNF"
BASE COUNT          772 a          281 c          256 g          675 t
ORIGIN      
        1 ttttttgata ttttttaata aaacttaaga gatatttttt tgtataattt ttaaaatgtg
       61 aaatatctat atcaaaattt ggttgaaaat tttgagcttg taaaatttca ttttgaaaat
      121 ttttatcatg ccaccattct ttactccagt attcaatacc tccaaagtgg tttttatttt
      181 ctaaaaacca atttgttaaa gtatctaaat tatcttttcc tatacatttt tctttttttg
      241 aaaaaaatat agcacaatta ataaaacgac ttgagagata taatttaaat aaatcaatag
      301 ttttatcatt gtagagtgaa ataaagtttt tgtctttggg ggtttcaagt tcatttaaag
      361 ctctgatgtc taaagaataa ataatgtttt taatatcttt atgtttaaat aaataatcta
      421 aaattaccgc tcttaatgca aatgtgcttc cacctaaaga tagatttatc caattacctc
      481 ctagtttttt gtttgcttct ttagcagagg tattttcaag catagaagtg cctattatgg
      541 cagaatcaaa atctttgtac agaatgagtc ctctagcttg cattctcata tctttcatgt
      601 aagtttcttt tctaaaatat ggtggatgaa agaaccaaaa aggatcgcga atataaagca
      661 atgtaaaaag aattattacg agaggcaaag gacataataa agaaaaaaga atgaattttt
      721 tattagaagc aaacaatatt tttccttaaa aattaaaata gataaattcg gtatatggtg
      781 tagcaataag agtaattaaa gctatataaa ataaaaacat tacaataagg gaatttttaa
      841 agctcgactt aaaatcttga agcatattaa tgctattttt aaaacaaata catagtataa
      901 aggagactaa aataaaacct accattgtat catttccgcc tattttttta aataaaagcc
      961 ctgctttgaa ttttaacggc aattccaccc aaattacccc aaacattgat tttaagaggt
     1021 ttatagcccc ttgtaaattt tcgcttctaa agaaaatcca agctatattg ataaaattga
     1081 aagtgataaa ccaagatata attttataaa ttttcgaatt taaaaaagtt ttgcctttag
     1141 cccaaaaact ataaattcta tggcttatca tagctatagc gtgtaaaatt ccccatataa
     1201 caaaacccca tccggctcca tgccatactc cgcttaaaaa agctacgata aaaagatttc
     1261 gtagattgat aaattttcca aagcgatttc ctccaagagg gatgtataaa taatctttta
     1321 aaaatcttcc taaagtaata tgccattttc gccaaaaatc agctatattt aaagctttat
     1381 atggagaatt aaaatttaca ggtaaagcta taccgaaaaa aagagctaat cctatagcca
     1441 tatcacaata tccactgaaa tcaaaataga gttgaaaagt atacgaaagg cttgttgccc
     1501 aagcctcaaa aatatttaaa aaatttccat tttgcacaac tgtaaatcct gcatttgccc
     1561 aagaagcaaa actatcagct atgtaaactt ttttaaaaag tcctatagaa aatataaaca
     1621 agccctttgc tattaatttc caatcgatta aagctttttc tttattaagt aaagaatgaa
     1681 attgcggcat catttcttta tgatggacta taggacctgc gataagttgc ggaaaaaaac
     1741 tgataaataa gcaataatct ataaaatcaa cttttttatt ttctaataaa tcctcaatat
     1801 tacttttttt ataacagtcc actaaaaatg caatttgttg aaaagtgaaa aatgaaattc
     1861 ctaaaggtag taaaatatgt ggtaaaggaa tattaaagtc taaatgagca agtttggaaa
     1921 aaagattaaa attttccaaa aaaaaatctg tatatttaaa gattgctagt aagcaaaggt
     1981 tgaa
//
LOCUS       DAEBKH010000172         1952 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.173, whole genome shotgun sequence.
ACCESSION   DAEBKH010000172 DAEBKH010000000
VERSION     DAEBKH010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.173"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(8..1249)
                     /locus_tag="KIL20_001621"
     CDS             complement(8..1249)
                     /locus_tag="KIL20_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HBD2721631.1"
                     /translation="MIVSKTYEIDSCDDVELGIKRESKLEFKLWYDDEKTPEALVFVV
                     QGMGDDISSIQYVGDYMVRQFNTAVVGVNYHCIGNRPQTGSTFYLDDIDKLILKVSCE
                     AADIKLPYDVDKIQDYKQMSEIFHFVNNQIIEGKQKGNFTPNYFLNLHVSLQPAKNEY
                     QNFGIMQAQDLLNVTLYLKKHAPFDTMGGGIPVIMIGSSHGGYLAHLAAKIAPWLVDG
                     VLDNSAYAKFLWRVVGFGKEIDFMQYSEFSTFDFFHHINTHCSTKTFWTSNSSSPCFF
                     SPARRKIRNLLEEDHLLEQSKCLKTCFVSYHSLYDEYVSLKEKTMLYKELEKLGFDAT
                     LHSITKESQVDGKFIKNLNHGMGIPVKLLIKKELPLMLEKIKQNLKKDYKEKCISYPC
                     EDLLYQFSEKDDKISLKIDKI"
     gene            complement(1249..1764)
                     /locus_tag="KIL20_001622"
     CDS             complement(1249..1764)
                     /locus_tag="KIL20_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HBD2721632.1"
                     /translation="MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNL
                     KTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGNFNGTKEVKFRVGDDKECLKLVF
                     INKADFILMGISSNEASKNAIINAANQSHEDLENIDFISSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            complement(1765..>1952)
                     /locus_tag="KIL20_001623"
     CDS             complement(1765..>1952)
                     /locus_tag="KIL20_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HBD2721633.1"
                     /translation="RSRLQNLCQKYNTNLKLAPLKFCSDNALMIARAAVDAYEKKEFV
                     SIKEDILSPKNKNFSRI"
BASE COUNT          655 a          350 c          234 g          713 t
ORIGIN      
        1 ggtttcctta aattttatct atttttagtg atattttgtc atctttttcg ctaaattgat
       61 acaacaagtc ctcacaagga taagagatac atttttcttt ataatctttt tttagatttt
      121 gttttatttt ttctagcatt aaaggaagtt ctttcttaat caaaagtttt accggaattc
      181 ccatgccgtg atttaagttt ttaataaatt ttccatcaac ttgagattct ttagtaatag
      241 aatgcaaagt tgcatcaaaa ccaagtttct caagctcttt ataaagcata gttttttctt
      301 ttaaagaaac atactcatca tataatgaat gataacttac aaaacaagtt ttcaaacatt
      361 ttgattgttc taaaagatga tcttcctcta aaagatttcg aatttttctt cttgcgggag
      421 aaaaaaaaca aggcgatgaa gaattacttg tccaaaaagt ttttgtcgaa caatgtgtat
      481 taatatgatg aaaaaaatca aaagtagaaa attcactata ctgcataaaa tctatctcct
      541 ttccaaaacc tacaactctc cataaaaact tagcgtatgc agaattatcc aacactccat
      601 ctactaacca aggtgcaatc ttagctgcca aatgtgctaa atatccccca tgagaactac
      661 ctatcataat aactggtata ccccccccca tagtatcaaa aggagcatgt tttttaaggt
      721 aaagtgtgac atttaaaaga tcttgagctt gcatgattcc aaaattttga tattcgtttt
      781 ttgcaggttg caaactcaca tgtaaattta aaaaataatt tggtgtaaaa ttaccttttt
      841 gcttgccttc aattatttga ttatttacaa aatgaaaaat ctcactcatt tgtttataat
      901 cttgaatttt atcaacatca taaggaagct tgatatccgc agcttcacaa cttactttta
      961 aaataagctt gtctatatca tctaaataaa aagttgatcc agtttgagga cgattaccaa
     1021 tacaatgata atttactcca actacagcag tattaaattg ccttaccata taatcaccaa
     1081 catattggat cgatgatata tcatcgccca taccttgcac cacaaacacc aaggcttcag
     1141 gtgttttttc atcatcatac caaagcttaa attcaagctt tgactctctt tttataccaa
     1201 gttctacatc atcacaagag tcaatctcat aagttttact cactatcatt acattccccc
     1261 tattaaaaga taagttttac tcgctaggtt tttaaaattt tcattcttac ttaagatcac
     1321 gcaagctttg ttactagaag agcttataaa gtctatattt tctaaatctt catggctttg
     1381 attggctgcg ttgatgatag catttttact tgcttcattg cttgaaattc ccatgagtat
     1441 aaaatcagct ttatttataa aaacaagttt taagcattct ttatcatcac ctacgcgaaa
     1501 ttttacttct tttgtaccat taaaattgcc aagatcgaca ttttcaaccc cgcttacatt
     1561 actcatcgtt tttatagagc ttaaatgatc attttttaaa gtataaatgc ttatatcatt
     1621 gatcaaagtt ttaaggttat ttaaagactt actaacttca gcttcatcct tgcttgaact
     1681 catttttggt aaagcaatag cggctaaaat tcctaaaata acaatcacaa aaacaagttc
     1741 taatatggta aaagcttttt tcatctatat ccttgaaaaa tttttatttt tagggcttaa
     1801 aatatcttct tttatactta caaattcctt tttttcataa gcatcaaccg cagctcttgc
     1861 tatcatcaaa gcattatcag agcagaattt taaaggagct agttttaaat ttgtattata
     1921 tttttgacat aaattttgca aacgcgaacg ca
//
LOCUS       DAEBKH010000173         1892 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.174, whole genome shotgun sequence.
ACCESSION   DAEBKH010000173 DAEBKH010000000
VERSION     DAEBKH010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1892
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.174"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..160
                     /locus_tag="KIL20_001624"
     CDS             <1..160
                     /locus_tag="KIL20_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HBD2721634.1"
                     /translation="ERKLADDEIYSIASKLGIQCKEFVKLEENKKNLVFGSFMLVENF
                     LKEWCGKK"
     gene            147..1049
                     /locus_tag="KIL20_001625"
     CDS             147..1049
                     /locus_tag="KIL20_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HBD2721635.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYTIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEAENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            986..1381
                     /locus_tag="KIL20_001626"
     CDS             986..1381
                     /locus_tag="KIL20_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HBD2721636.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            1381..>1892
                     /locus_tag="KIL20_001627"
     CDS             1381..>1892
                     /locus_tag="KIL20_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HBD2721637.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQ"
BASE COUNT          688 a          219 c          358 g          627 t
ORIGIN      
        1 agaacgaaag ctggctgatg atgaaattta tagtattgca tcaaagctag gcatacaatg
       61 caaagaattt gtaaaattag aagagaataa aaaaaatcta gtttttggtt cttttatgct
      121 ggtagaaaat tttttaaagg agtggtgtgg taaaaaataa attcactatt accattacag
      181 atattaacgg ttcaagacat ttttatttaa atcaaataat caaaaaaata gttttttata
      241 ctattgcttt tattgtttta tttttagttt ttagtggttt ttatatcaaa tatctcgata
      301 gcaaacttag cgatatcagt gaaaagcgtg aggagctttt gaaaaaaagc aaagaattgg
      361 aattatctaa ttcgcaaatg caaaaaagca tagaagaaaa aactcagcag tatgcagcta
      421 tagaagataa aatagcttct tttgaagagg ctttgggctt agaagcagaa aataatctta
      481 caattagtgc aagacttgat aatcttcagc ttaccaatga gcagcaactt ggaattttgg
      541 gacaaattcc taatggatgg cctattgaaa ataaaggcat tacaggaaat tttggctgga
      601 gagagcatcc gcttttaaaa agaagggaat ttcatcctgg tattgattta agagcagaaa
      661 ttggtacccc tatttatgca ccagcaagtg gagtagtgga attttcaggt tatagtgata
      721 atggctatgg ctataatgta attttattgc ataattttgg ttttaaaaca gtatttgctc
      781 atatgatgcg caaagaagtg gtcaaagcag gtcaatttgt taataaaggg cagttgatag
      841 gttatagtgg caatacaggt ctttctacgg ggccgcattt gcactatgag gtaaggttta
      901 ttaataaaac tttagaacct ttgtattttt taaatttgca aagaaaaaat atgaatgatt
      961 tttttaatca agaaaggaga gttccatggc aatctttaat aaaggcggta tcagcccaac
     1021 atccagctct agctcagaaa caacagtaat ttcttcaggt gcgagaattg agggtaaatt
     1081 ttattttgct tctatgctcc atgttgatgg agagttaagt ggtattattc attctgaaag
     1141 cattgtggtt atcggaaaaa atggaaattt aaaaggtgaa ttacaagcag ataaaattgt
     1201 agtaaatggg tgttttgaag ggcaacttga ggctaatagt ttagaaattt tagcgggcgg
     1261 agttgttaat ggtgatattt caacgcaaaa aatttctata gaaaatggcg gtcgctttaa
     1321 tggaactagt aaaattaaag aagatactat caaacttatt gaaaataaca acgaagaata
     1381 atgcaagctt cattttatga atacttacaa aatccaaaaa tttgtgaact ttttctttgt
     1441 aaagatgaaa aacaagcaga tttactcgct caagtttcac gatttaaggg tttaaaaacc
     1501 tttgttttac ctgattttag agcgcagttt ggagatgatt taagggcttt ttctaaagaa
     1561 ctttttgatc tttgtaagat tttaaatgct tatcataaag aagaagaaaa aaaaatcctt
     1621 atttctcctt taaatactgt tttaaaaaaa cttccttcaa aaaaacattt acaaaattat
     1681 catatcgata aaaaacaaaa ttttgatttg aaatgttttg aagatgaaat ttcaagattg
     1741 ggatacgaat ttgtagatat agttcaggat aaaggtgaaa tttcaattcg tgcggatatt
     1801 attgatattt tttgtatcaa tgaagaaaat cctattagaa ttttactttt tggcgaagag
     1861 attgaaagta taagatattt tgatttgcaa ag
//
LOCUS       DAEBKH010000174         1873 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.175, whole genome shotgun sequence.
ACCESSION   DAEBKH010000174 DAEBKH010000000
VERSION     DAEBKH010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1873)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1873)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1873
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.175"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..555)
                     /locus_tag="KIL20_001628"
     CDS             complement(<1..555)
                     /locus_tag="KIL20_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HBD2721638.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNVKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKSLGFKDYHIL
                     KGEIFAYKNFFIMPSYDLDFIEKNP"
     gene            complement(552..1031)
                     /locus_tag="KIL20_001629"
     CDS             complement(552..1031)
                     /locus_tag="KIL20_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HBD2721639.1"
                     /translation="MSEFKIIDLRQEDLDILQEMIIEFAKYEDMLDFLQCTKEKLEHS
                     LLKNKFARAFLLKENEKTIGYMIYFYTFSSFWGSGGIYLEDIYIREDFRKKGYGKAVF
                     KFLGEICKKENLKRLDWVCLNDNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            1162..1296
                     /gene="rpmH"
                     /locus_tag="KIL20_001630"
     CDS             1162..1296
                     /gene="rpmH"
                     /locus_tag="KIL20_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HBD2721640.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            1293..1619
                     /gene="rnpA"
                     /locus_tag="KIL20_001631"
     CDS             1293..1619
                     /gene="rnpA"
                     /locus_tag="KIL20_001631"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HBD2721641.1"
                     /translation="MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            1616..>1873
                     /gene="yidD"
                     /locus_tag="KIL20_001632"
     CDS             1616..>1873
                     /gene="yidD"
                     /locus_tag="KIL20_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HBD2721642.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRILRCNPFFKGGFDYPRVSKNFYPMNLCFKPIFLAK"
BASE COUNT          688 a          261 c          242 g          682 t
ORIGIN      
        1 tggatttttt tctataaaat ctaaatcata acttggcatt atgaaaaaat ttttataagc
       61 aaaaatttca ccttttaaaa tgtgataatc tttaaatccc aagcttttaa atgtgtattc
      121 tcctagacaa agcaaaaaag caggttgaat cagttttagt tcgttccaga aaaatggtaa
      181 gcaagattgt agcgaaaaat catcaaattt tccattacaa aaacatttaa atagataaga
      241 aaaataaaaa tcttcatcgc aaagccctaa aatttgataa atatagtgtt ttaatttttc
      301 accttttttt gaattaagta aaattccact ttcattttca ctcttttgcc caaaaacatc
      361 aagaattagc aatttgacat tttttatctt aggctccata agactaaatt ttcttgtttt
      421 ggaaaattgg cataaggtgc aagatgaaac aagttgtttt aattcttgaa aattttgtac
      481 ttgttcaaaa tggtttgtat gtgtatcaac aaagttaaac cccatagctt ttaaataata
      541 aagacttctt atcataaatc acacaatttt tctaaatttt ctccacttag acgataattt
      601 ctccattgtt taagatgttt agcgtttaaa ctttcataaa aattaatacc taaaatatta
      661 tcatttaagc aaacccagtc aagtcttttt aaattttctt ttttgcaaat ttctcctaaa
      721 aatttaaaaa cagcttttcc ataacctttt ttacgaaaat cttctcgtat ataaatatct
      781 tcaaggtaaa ttccaccgct gccccaaaaa gacgaaaaag tataaaaata aatcatatag
      841 cctatagttt tttcattttc ttttaacaaa aaagcacgag caaatttatt ttttagtaaa
      901 gaatgttcca gtttttcttt cgtgcattga agaaaatcta acatatcttc gtattttgca
      961 aattctatga tcatctcttg taaaatatct aaatcttctt gtcttaaatc aataatttta
     1021 aattctgaca tttttaacct tttaaaaata atttcaaaat ttatcaaaag aatttaaaaa
     1081 ttactcttaa tcaaaagcaa tttataagta agattaagat aaaatacaag tttattttat
     1141 aattttttaa ggaaaaatca aatgaaaaga acttatcagc cacatggcac tccaagaaaa
     1201 cgcactcatg gtttccgtgt tcgtatgaaa actaaaaatg gtcgcaaggt gatcaatgca
     1261 agacgcgcta aaggtagaaa aagacttgct gtgtgaaaaa ttttgataaa tttagcacaa
     1321 acgaggaatt ttcatctgta tataaagtag gtaaaaaatg gcattgcgaa ggtgtgatca
     1381 ttttttatct gaatagttat gaaaaaaaaa tagcagttgt tgctagtaaa aaagttggaa
     1441 aagcagtggt tagaaatcgt tcaaaacgaa ttttaagggc tttgtttgct aagtttgaaa
     1501 gatatcttca agatggcaaa tatatttttg tagctaaaaa tgaaatcact gaactttctt
     1561 tttctaggtt agaaaaaaat ctaaaatggg gattgaaaaa actagaatgt ttcaaatgat
     1621 atgcctaaaa atactccgtt tttatcagaa attcttaagc cctttaaaac ccgctgcttg
     1681 taggtattat cctagttgtt ctgagtatgc gctttggcag tttcaaaaaa agaatttttt
     1741 tctagctttt ttttctactt tttttagaat tttaagatgt aacccttttt ttaaaggggg
     1801 ttttgattat cctagagttt ctaaaaattt ttatcctatg aatttatgtt ttaagcctat
     1861 atttttagca aaa
//
LOCUS       DAEBKH010000175         1807 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.176, whole genome shotgun sequence.
ACCESSION   DAEBKH010000175 DAEBKH010000000
VERSION     DAEBKH010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.176"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..469
                     /locus_tag="KIL20_001633"
     CDS             <1..469
                     /locus_tag="KIL20_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HBD2721643.1"
                     /translation="DLDYKQDLILSEQKLYKVKEYFLTLKKDEKKVILDFLSQNNDDK
                     CDLYEMLYYLINEVYSFEHDGIFYQIIIDKEKMLMAQKHDKSFYPLGSFIYKPYLYEL
                     KSIRPFSFLMKILGLEYLGAMISHTKFYRLARKLFFNPKGFFEDLRAKKNANI"
     gene            456..1505
                     /locus_tag="KIL20_001634"
     CDS             456..1505
                     /locus_tag="KIL20_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002912505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HBD2721644.1"
                     /translation="MQTYKCLVKPKISVIIPSYNSAKYIKECLDSVIFQSLKEIEILC
                     IDAYSIDGTIDILKSYKKQDSRIKIIFSKKKSLGYQINLGLKEAKGEYCTIVESDDYV
                     KIDMCEKLYRLACNQDCQVVKSDFIGFEDKEKERIFKNLSICYDQALYNKKTNSYLNP
                     SIIINSWNMNQSSLYKMDFIKKYNIRANETKGASYQDIGLWFQILSLASSIYFCQEGF
                     YFYRQDNENASVKSKDKIYCVCDEFEFLDKFFDKNLELKSRLQDVFYCFKFKIYSWNL
                     KRIDDKYKLEFLYKFSQDFSLIYDKLDKTVFKVSEISEISCIVQDPSKYYKKYNSVFY
                     SIKKKIFRIKRKYFR"
     gene            1509..>1807
                     /locus_tag="KIL20_001635"
     CDS             1509..>1807
                     /locus_tag="KIL20_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HBD2721645.1"
                     /translation="MNKTVGVVIPIYNVEKYLKECLDSVVNQTYKNLQVVLVNDGSTD
                     ENSFNIAKEYTLKDERFILFDKKNGGHSSAKNVGIEYFSGEYILKNKTQILEKNS"
BASE COUNT          719 a          143 c          283 g          662 t
ORIGIN      
        1 agatttagat tataaacaag atttaatttt aagcgagcaa aaactttata aagtgaaaga
       61 atatttctta actttaaaga aggatgaaaa aaaagttatt ttggattttt taagccaaaa
      121 taatgatgat aagtgtgatt tgtatgaaat gctttattat ttgattaacg aagtttatag
      181 ttttgagcat gatgggattt tttatcaaat cattattgat aaagaaaaaa tgctgatggc
      241 acaaaaacat gataaaagct tttatccttt aggatctttt atttataaac cttatttgta
      301 tgagcttaag agtataagac ctttttcatt tttgatgaaa attttaggtt tagagtatct
      361 tggtgctatg atttcacata ctaaatttta tcgtttggca agaaaattgt tttttaatcc
      421 taaggggttt tttgaggatt tgagagctaa aaagaatgca aacatataaa tgtttagtta
      481 aacctaaaat ttctgttatt atcccttctt ataattcggc taaatatata aaagaatgtt
      541 tagacagtgt gatttttcaa agtttaaaag agattgaaat tttatgtata gatgcatatt
      601 caattgatgg aactatagat atattaaaat catataaaaa gcaagatagt agaattaaaa
      661 ttattttttc aaaaaaaaag agtttgggtt atcaaattaa tctaggatta aaagaagcca
      721 aaggagaata ttgcacaata gttgaaagtg atgattatgt aaaaatagat atgtgtgaaa
      781 aactttatag attagcttgc aatcaagatt gccaagtagt taaatctgat tttattggtt
      841 ttgaagataa ggagaaagaa agaattttta aaaacctctc tatatgttat gatcaagctt
      901 tatataataa aaaaactaat tcgtatttaa atccaagtat tattataaat tcttggaata
      961 tgaatcaatc tagtctttat aaaatggatt ttattaaaaa atacaatata agagcaaatg
     1021 aaacaaaggg tgcttcttat caagatatag gattatggtt tcaaatttta agtttggctt
     1081 caagtattta tttttgtcaa gaggggtttt atttttatag acaagataat gaaaatgctt
     1141 cggttaagag taaagataaa atatattgcg tctgcgatga gtttgagttt ttagataagt
     1201 tttttgataa gaatttagag cttaaaagta gattgcaaga tgttttttat tgttttaaat
     1261 ttaaaatata ttcatggaat ttaaagcgta ttgatgataa gtataagtta gaatttttat
     1321 ataaattttc acaagatttt tcacttattt atgataagtt agataaaaca gtgtttaaag
     1381 ttagtgaaat atctgaaatt tcttgcattg ttcaagatcc tagtaaatac tataaaaaat
     1441 ataatagtgt tttttatagt ataaaaaaaa agatttttag aataaaaaga aaatatttta
     1501 ggtaaaagat gaataaaaca gtaggcgtag ttatcccaat ctataatgta gaaaaatact
     1561 taaaagaatg tttagatagt gttgttaatc aaacttataa aaatttacaa gttgtacttg
     1621 taaatgatgg tagcactgat gaaaactcat ttaatatagc taaagaatac actttaaaag
     1681 atgaaagatt tatacttttt gataaaaaaa atggtggtca tagttctgct aaaaatgtcg
     1741 gcatagagta ttttagtgga gaatatatac ttaaaaataa aactcaaatt ttagaaaaaa
     1801 attcttt
//
LOCUS       DAEBKH010000176         1800 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.177, whole genome shotgun sequence.
ACCESSION   DAEBKH010000176 DAEBKH010000000
VERSION     DAEBKH010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.177"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..424
                     /gene="pgsA"
                     /locus_tag="KIL20_001636"
     CDS             <1..424
                     /gene="pgsA"
                     /locus_tag="KIL20_001636"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HBD2721646.1"
                     /translation="ALTFSLAALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAF
                     LGLLLTGKANEWVIYIILVREFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFL
                     IMEWIGGEILLYIALILTLYSGFEYIYTYIKAQKKGEK"
     gene            421..1527
                     /gene="rseP"
                     /locus_tag="KIL20_001637"
     CDS             421..1527
                     /gene="rseP"
                     /locus_tag="KIL20_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HBD2721647.1"
                     /translation="MRSLLFLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGNIAPNSAAQEIGLQ
                     KNDTILEINGIRIQTFDEISKHLSLDPLKILINREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKV
                     PQRTFEYLSYTGMAILLSLMLFATYNDISRIIGE"
     gene            1520..>1800
                     /locus_tag="KIL20_001638"
     CDS             1520..>1800
                     /locus_tag="KIL20_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HBD2721648.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNKEKNKHLKDFFSQRPYACYNATRRFCDKSFKANERVKTLIYDVDKGLA"
BASE COUNT          629 a          251 c          286 g          634 t
ORIGIN      
        1 tgctttaact ttttcattag cagctttaag tgattttttt gatggataca tcgcaagaac
       61 ttggaaacaa actacaaaac tgggtggaat cttagatcca ttagccgata aaatgcttgt
      121 tttagcagct tttttagggc ttttacttac aggaaaagct aatgaatggg taatttatat
      181 tatattagta agggaatttt ttatcacagg ttttagagtt gtaatgatta gcgaaaattt
      241 aaatgtcaat gcttcttttg caggcaaact taaaaccgct tttcaaatga ctgcgatagg
      301 atttttaatc atggagtgga taggcggtga aattctactt tacatagctt tgattttaac
      361 tctttattct ggatttgaat acatctatac ttatataaaa gctcaaaaaa aaggagaaaa
      421 atgagatctt tattattttt aattgttatt ttgattttgg gaattaaatt ttattctatt
      481 gaatttttag caactgtttt agtcatctca tttttaattt tctttcacga attaggacat
      541 tttttggctg caagatcttt gggtgtaaaa gttgaagttt ttagtatagg atttggaaaa
      601 agtcttatag agcgtgaatt taaaggcaca aactatcgct taagcacttt accacttgga
      661 ggatatgtta aacttaaagg acaagatgat atgcgtcctg gttttgaaaa tctagacaaa
      721 gatagctata gcattttaag tcctttaaaa aagatttata ttctttttgc tggaccattt
      781 tttaatctaa ttttagcttt ttttctttat attatcatag gaaatttagg tctaaacaaa
      841 cttgctccgc aaataggaaa catagcgcca aactctgctg cacaagaaat aggacttcaa
      901 aaaaatgata ctatcttaga aattaacggt ataagaattc aaacctttga tgaaatttca
      961 aagcatttaa gtttagatcc tttgaaaata ttaatcaata gagaaggaaa aaatttagaa
     1021 tttattttaa ctccaaaaat aggacaagga tacaatgact ttggacaaat cgttgaaaaa
     1081 cctcaacttg gagtcagtcc aaatgggaca agcactcttg taaaacacca aggtttagaa
     1141 agttttaaat atgccgcaca agaaagtttt caagcttcta cactcatcat caagggtatt
     1201 gtaaaactca taagtggtga agttgaagca aaaaatttag gcggtattat caccatgact
     1261 gaaattacct caaaggctgc acaaaatagc tttactttgc ttttatttat cactgcttta
     1321 atttctataa atttaggcat tttaaatctt ttacctattc ctatgcttga tggaggacat
     1381 atacttttta atctttatga aatgattttt agacgcaaag ttccacagcg tacttttgaa
     1441 tatttaagct atacaggcat ggcaatactt ttaagtttaa tgctctttgc aacttataat
     1501 gatatatcaa ggattatagg tgaataaaaa attttcctac cctattccaa attttactga
     1561 tagaagaaaa agtataatct tttggcgcta tttgcgtttt caagcaagaa aaattttata
     1621 ttttcctcaa gtaagacttc tagaaaaaac acttaataaa gaaaaaaata aacatttaaa
     1681 agactttttc tctcaaagac cctatgcttg ttacaatgct acaagaagat tttgcgataa
     1741 aagttttaaa gcaaatgaac gtgttaaaac acttatttat gatgttgata agggactcgc
//
LOCUS       DAEBKH010000177         1786 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.178, whole genome shotgun sequence.
ACCESSION   DAEBKH010000177 DAEBKH010000000
VERSION     DAEBKH010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1786)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1786)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1786
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.178"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..259)
                     /locus_tag="KIL20_001639"
     CDS             complement(<1..259)
                     /locus_tag="KIL20_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721649.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHHENLEQKNENQHYAKLEY
                     EQNVSILPQFAYDINFDAKRYKKYFFNPWHDSFKNYKGQNIF"
     gene            308..1651
                     /gene="pif1"
                     /locus_tag="KIL20_001640"
     CDS             308..1651
                     /gene="pif1"
                     /locus_tag="KIL20_001640"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HBD2721650.1"
                     /translation="MLDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSALDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSASVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNYLSLIRQGFLDEKILSFFESLRIDYKELENLE
                     DDYTLLCGINKKVNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELDSWVGSLNILE
                     ELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLEPYTF
                     FMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     VALSRATNPNTLKIYSTKKINFGFYFANILKIDSNVIEFYKKHNFLDLEIQEQII"
BASE COUNT          681 a          183 c          271 g          651 t
ORIGIN      
        1 aaaaaatatt ttgtcctttg taatttttaa acgaatcatg ccaagggtta aagaaatatt
       61 ttttatatcg ttttgcatca aaattaatat cgtaagcaaa ttgtggcaaa atgcttacat
      121 tttgttcgta ttcaagtttt gcataatgtt gattttcatt tttttgttct aaattttcat
      181 gatgaagtga agttaaattt tttgttgaac aagctgttaa aaatagcact ataaaagtaa
      241 aatataaaca agatttcata atcaaccttt tagaaaaaat agttataatt aaagccaagg
      301 aaatataatg cttgataaac tagaaaaaat tttagcttat gataatgttt ttttaagtgg
      361 tggtgctgga gttggtaaaa gctttttgac aaatgagctt atcaaatctt atagaaaaca
      421 aaaaaaatta gccatagctc ttggttctag tgctctatcg gcgtttaata taggcggtgt
      481 taccttacac agcttttttt gtttaggata ttgtgatgat atgatgaaat taagcgcatt
      541 ggatcgcaat caaaaacaaa aagaaaaatt aacaaaactt aaagagcttt taaaaacgat
      601 tgagcttatt attatcgatg aaatttccat ggttagcgca agtgtttttg aaatgatagg
      661 ctttagactt aaaaattctc aatttaatgg aaaaatttta gttgtaggag atttttttca
      721 actgcctccc gtaattaaag aaaaaaaaga aactttattt aatcattctt attatgcttt
      781 ttcttcattt ttttggcaag atttaaattt taagaatatt aaactttctc aacctaaaag
      841 aacacaaaat atggaatttt ataactattt atctttgatt agacaaggtt ttttagatga
      901 aaaaatttta agcttttttg aatctttgcg aattgattat aaagaattag aaaatttaga
      961 agatgattat actttacttt gtggtatcaa taaaaaagta aacaatatca atcaagaaaa
     1021 attaagcaaa cttgagaccc cacttgtatg ctttaaggct caggttaaaa aagaagataa
     1081 gagaataaaa gatgaagaac ttgattcttg ggttggaagc ttaaatatat tggaagaatt
     1141 aaatattaaa ataggtgctc gtattatttt ttgtgtaaat aattgggata agaattatta
     1201 taatggtgag caaggcatta tagaagatat tctttatgaa gaggagaaaa tttatattag
     1261 tattattaaa aataatggga tgaaaatttt acttgaacct tatacttttt tcatggaaga
     1321 acttgaacaa tcaggtaaag attttgttgt taatattctt gcaagtgtta cacagtttcc
     1381 tattaaatta gcttatgcta tcactataca caaatcacaa ggtatgagta ttgaaaaatt
     1441 agtgtgtgat attgatcata tttttgaaaa tggacagctt tatgtcgctc tttctcgcgc
     1501 tacaaaccca aatactttaa aaatttattc tacaaaaaag ataaattttg gattttattt
     1561 tgctaatatt ttaaaaatag attctaatgt gatcgaattt tataaaaaac ataatttttt
     1621 agatcttgaa atacaagaac aaatcattta aaggcattaa atgaaaaaaa tatttttaag
     1681 tgtttttttg gctttgagtt taaatgctca aaatcttgaa atagataaaa taagaacaga
     1741 tttgtattct aaaagtgggg caaatgttct taaaaaagtt gaaatt
//
LOCUS       DAEBKH010000178         1710 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.179, whole genome shotgun sequence.
ACCESSION   DAEBKH010000178 DAEBKH010000000
VERSION     DAEBKH010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1710
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.179"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..498)
                     /locus_tag="KIL20_001641"
     CDS             complement(<1..498)
                     /locus_tag="KIL20_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HBD2721651.1"
                     /translation="MIFFYYFLTWTAFLFCAVFILLLSFLKSKYKTSLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKTLVLKFDSRITTITQTGFEYAKEFCKKVNYLAFENFL
                     PFWFKPCKVLVIFEAEYWLMLVFMAHIYKTKIILLNARISDKSYHSYQRFSFFYKKIF
                     SYIDEV"
     gene            complement(495..1211)
                     /locus_tag="KIL20_001642"
     CDS             complement(495..1211)
                     /locus_tag="KIL20_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HBD2721652.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINRTLKDAELKIGKINT
                     DLEKIDEEIKDIENQKVQNNAHISEFSAKIKELSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVGEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            complement(1221..>1710)
                     /locus_tag="KIL20_001643"
     CDS             complement(1221..>1710)
                     /locus_tag="KIL20_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HBD2721653.1"
                     /translation="RAFIKEMICKNISLISMHTNYDLSHLNTYFTEEILGFKISFKDE
                     FLIYVENSMSFEALCDWVKKKLNLQILRVSDCGKKDIKRIAICTGSGGDLISKVDADC
                     FLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCLAKDLKNLPLQAIITVSKNPFQ
                     YF"
BASE COUNT          595 a          282 c          174 g          659 t
ORIGIN      
        1 aacttcatca atataagaaa aaattttttt ataaaaaaaa gaaaatcttt gataagaatg
       61 ataagattta tcagatattc tcgcattaag caaaataatc ttagttttat aaatgtgtgc
      121 catgaaaaca agcataagcc aatattctgc ttcaaaaatt accaaaacct tacaaggctt
      181 aaaccaaaaa ggcaaaaaat tttcaaaagc aagataattt acctttttac aaaattcttt
      241 tgcatattca aaacctgttt gagtaatagt agttattctt gaatcaaatt tcaaaaccaa
      301 agttttaata cttcttacct ccccgtaaga acaagcatga aaatgtacat cagctttttc
      361 ttgatgtaaa tttttataaa gaaaaaatcg ggattttaaa ctagttttgt atttggattt
      421 taaaaaagaa agcaaaagaa taaagacggc acaaaataaa aatgccgtcc aagttaaaaa
      481 ataataaaaa aagatcaatt ttgttcttct tgctctttat aaagaattct tccacaatga
      541 ggacaagtta caatctcttc accttttaca acagacagat aagtcttatc gtaaattttc
      601 ataaaacatc catagcatgc ttgtttttta acaggaacta cagcagtatt tttcgcccat
      661 ttgcgaattt tttcataaaa acttaaaact ttttgattca tctcgcccac aagtttggtt
      721 tttttatcat aaacactcat tctatctttt tcaagaactt ccatttcaga tttaatgctt
      781 actctaatct cattaatatt ttgctcttgt ttgatttttt cttcttcaag ttctttttta
      841 taagtttctt tattctctaa aattttatcc agtcttacaa tttcatcatt tgcagcgtct
      901 aattgctctt ttgcaatatc ttcttcaatt tttaaagcat tagcttcttt ttctgttttt
      961 actgcaccac tttttttaga aagctcttta atttttgccg aaaactcaga aatatgagca
     1021 ttattttgta ctttttgatt ttctatatct ttgatttctt catcgatttt ttctaaatct
     1081 gtgttgattt ttcctatttt taactcagca tcttttaaag tcctattaat actgtctatt
     1141 tttggttcat aactatcaat ttcttgatct atttttgata aaagcactaa ttgttcgaga
     1201 tatttattca tttattttcc ttaaaaatat tgaaatggat tttttgaaac tgttattata
     1261 gcttgtagcg gcaaattttt caagtctttt gctaaacatt gagaaaaata tctctcactt
     1321 tcaaaatgac ccaaatcaat aagactaatt tgattactaa gtgcctctaa agcttgatga
     1381 tatttaaaat ctccgcttaa aaaacaatcc gcatctactt tagaaattaa atccccgcca
     1441 cttccagtac atatagcaat acgcttaatg tcttttttac cacaatcact tacacgtaaa
     1501 atttgtaaat ttaacttttt tttcacccag tcacacaaag cttcaaaaga catagaattt
     1561 tccacataaa ttaaaaattc gtctttaaaa gaaattttaa aacctaaaat ttcttccgta
     1621 aaataagtgt ttaaatgact taaatcgtaa tttgtatgca tactgattaa agaaatattt
     1681 ttacaaatca tttctttaat aaaagctcta
//
LOCUS       DAEBKH010000179         1646 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.180, whole genome shotgun sequence.
ACCESSION   DAEBKH010000179 DAEBKH010000000
VERSION     DAEBKH010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.180"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            123..1316
                     /locus_tag="KIL20_001644"
     CDS             123..1316
                     /locus_tag="KIL20_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721654.1"
                     /translation="MENLTKEQKKLFYKFIKNIKDENSLKQLEQFLDLIENNAIQNSL
                     KDIAEFNSVYKGNGNNEEMSIKDMIEDIKIGQKDIDEIYWKIFDIQSDNKNESSALIE
                     IEKAKEYADRIKSDYEKFYDQNAQGNVTKGIISKLKQACNDIETNKDKIKKFEEFYNE
                     IFVGIKADENGKGGKLSLKDRLNEQKTEINNLISSKKQELENCLNDYKDKFENLYKEK
                     NDKIDELLPGATSKGLAEAYKDEKEDMQENIKKWNGIFIGSIVLFITLFVIYFIISLN
                     KDFTFASFFRAFPFLFFSGFFTYYSTKQIAEYKRMASEYAYKQRLNQTYKGYETQIKE
                     TNNEELKNQLLKIMLDSAENNPSKILDKKGEIPSLSVIEKMLDILPFDTLKRIQDKIK
                     AKIEK"
     gene            1416..>1646
                     /locus_tag="KIL20_001645"
     CDS             1416..>1646
                     /locus_tag="KIL20_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721655.1"
                     /translation="MREYKIRRQLFNILSKNNPNNIKEYDISIPEYKKIKKIIEKIKG
                     KEDFRQSDGLFSDDEKWYLVCKATLDLSSLCDN"
BASE COUNT          767 a          158 c          243 g          478 t
ORIGIN      
        1 gccaaagagc aaaacaaaaa cgcaagcacc caagaactag aaaataaaat caattctttg
       61 acttataaac tttacaatct caccgaagat gagataaaaa tcattgaaaa taaggagcaa
      121 aaatggaaaa tttaactaaa gagcaaaaaa agttatttta taaatttatt aaaaacatta
      181 aagatgaaaa ttctttaaaa caattagagc aatttcttga tctaatcgaa aataatgcta
      241 tacaaaattc attgaaagat attgcggaat ttaattctgt ttataaagga aatggcaata
      301 atgaagaaat gtctataaaa gatatgattg aagatataaa aatcggacaa aaagatatag
      361 atgaaattta ttggaaaatt tttgatattc aatctgataa taaaaatgaa agtagtgctt
      421 taatagagat agaaaaagct aaagaatatg cagatagaat aaagagcgac tatgagaaat
      481 tttatgatca aaatgctcaa ggcaatgtta ccaaagggat tatctcgaag ttaaaacaag
      541 cttgtaatga tatagaaaca aataaagata aaataaaaaa atttgaagaa ttttataatg
      601 aaatttttgt tggcattaaa gcagatgaaa atggaaaagg cggaaaatta tctcttaaag
      661 atcgtttaaa tgaacaaaag actgaaataa acaatttaat ttctagtaaa aaacaagaat
      721 tagaaaattg tttaaatgat tataaagata aatttgaaaa tttgtataaa gaaaaaaatg
      781 ataaaataga tgaattattg ccaggtgcaa cttctaaagg attagccgaa gcttataaag
      841 acgaaaaaga agatatgcaa gaaaatatta aaaagtggaa tggtattttt attggctcca
      901 tagttctttt tataactctt tttgtaattt attttattat atcattaaat aaagatttta
      961 catttgcaag tttttttaga gcttttccgt ttttattttt tagtggattt tttacttatt
     1021 attctacaaa acaaattgca gagtataaaa gaatggcaag cgaatatgct tacaaacaaa
     1081 gattaaatca aacttataaa ggatacgaaa ctcaaattaa agaaacgaat aatgaggaat
     1141 taaaaaatca acttttaaaa attatgttag attctgccga aaataatcca agcaaaatac
     1201 ttgataaaaa aggtgaaatt cctagtttaa gtgtgattga aaaaatgctt gatattcttc
     1261 catttgatac attaaagagg attcaagata aaattaaagc aaaaatagaa aaataattat
     1321 aaaaaactat ttaaaaaccg cacgaaaaaa ttccatagtg ccaagttgaa aaagatagga
     1381 aggataaaat gataaaagaa acacatcgga aaaatatgag agagtataaa attagaagac
     1441 agttatttaa tattctatca aaaaacaatc caaataacat aaaagaatat gatatatcta
     1501 ttccagagta taaaaaaata aaaaaaataa tagaaaaaat aaaaggaaaa gaagacttta
     1561 ggcaaagcga tgggttattt tctgatgatg aaaaatggta tttggtttgc aaggcaacac
     1621 tagacttatc ttcattatgt gataat
//
LOCUS       DAEBKH010000180         1608 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.182, whole genome shotgun sequence.
ACCESSION   DAEBKH010000180 DAEBKH010000000
VERSION     DAEBKH010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1608
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.182"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..211
                     /locus_tag="KIL20_001646"
     CDS             <1..211
                     /locus_tag="KIL20_001646"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721656.1"
                     /translation="KQRLIKETTDVFLNKIIEDEKLRNDFINKILKNSEFMEEFERMV
                     DLHINDKISILTDIDQEKSQIGGLE"
     gene            208..759
                     /locus_tag="KIL20_001647"
     CDS             208..759
                     /locus_tag="KIL20_001647"
                     /inference="COORDINATES: protein motif:HMM:NF017885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HBD2721657.1"
                     /translation="MTYKEIKDKTPYEILDLLEMKEPPFNPFEIAQKLGINVVKDLDL
                     DKIDTEGQISVDEKGEPIIWINPLKNENRQRFTLAHELGHLANDILPSIENPIIDSYE
                     TLYRSNTYGGIETRANQFAARLLMPLRQIEDFIAECRKTTPDLKAAEAILLIASKFEV
                     SKQAVFHRLKNVGLIKQDYTYPF"
     gene            complement(756..1040)
                     /locus_tag="KIL20_001648"
     CDS             complement(756..1040)
                     /locus_tag="KIL20_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721658.1"
                     /translation="MDRVSADIRQGVNKRFINAICNHNNELVLEYLKNGMSVTKECMG
                     KEPMFYAVTHNNFGAILLLLKYGAILDKEYLEESNKNFSKEALEFLASLL"
     gene            complement(1100..>1608)
                     /locus_tag="KIL20_001649"
     CDS             complement(1100..>1608)
                     /locus_tag="KIL20_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HBD2721659.1"
                     /translation="KFRNSIPYPQILNFLNQRNISINYFFYGSSPKDQLECENKYKIL
                     KLYKTNASLGGGGINDLIDSSDLIIDEKVLNFFGSKECEFITCYGESMEPIIKDGSIC
                     VIDRNKTFKNKSICVINTRNGLFIKQVLKQDDGVILHSLNPLYEDIFYKNGDFLLIGV
                     VIGELSRL"
BASE COUNT          597 a          236 c          217 g          558 t
ORIGIN      
        1 taaacaaaga ttaataaaag aaacaactga tgtattttta aataaaatta tagaagatga
       61 gaaattacgc aatgatttta taaataaaat tctaaaaaat agtgaattta tggaagaatt
      121 tgaaagaatg gtcgatttac atataaatga taaaatatct atattgacag atattgatca
      181 agaaaaatca caaataggag gtttggaatg acttataaag aaataaaaga taaaacccct
      241 tatgaaattt tagatttatt ggaaatgaaa gaaccaccat ttaatccgtt tgaaattgct
      301 caaaaattag gtataaatgt agttaaagat cttgaccttg ataaaattga cactgaaggt
      361 caaattagcg tagatgaaaa aggtgaacct attatttgga taaatccgct taaaaatgaa
      421 aatagacagc gttttacatt ggcacatgaa ttagggcatt tagctaatga tattttacct
      481 agcatagaaa atcctattat tgatagttat gaaacccttt atagaagcaa tacatatggt
      541 ggaatagaaa ctagagccaa tcaatttgcg gcaagactac ttatgcctct tcgacaaata
      601 gaagatttta tagcagaatg cagaaaaaca acacctgact taaaggcagc agaagcaata
      661 ttacttattg cttcaaaatt cgaagtttca aagcaagctg tttttcacag acttaaaaat
      721 gtaggtctga taaaacaaga ttatacatat cctttttaga gcaaagaggc taaaaattct
      781 aaagcttctt tgctaaaatt tttattgctt tcttctaggt actctttatc taaaatagca
      841 ccgtatttta ataaaagtaa aatcgctcca aaattattat gagttactgc ataaaacata
      901 ggctctttac ccatgcattc tttagtaaca ctcataccat ttttaagata ttctaaaaca
      961 agttcattgt tatgattgca aattgcgttt ataaatcttt tgttaacacc ttgtcttatg
     1021 tctgctgata ctctatccat ctttatatcc ttttgtattg atgagacaag attagcttgg
     1081 cttagcttat tgtgtgctgt catagtcttg aaagttctcc aattaccaca ccaattagca
     1141 aaaaatctcc atttttataa aatatatctt catataaagg atttaaagag tgtaaaatca
     1201 ctccatcatc ttgttttaaa acttgtttta taaaaagtcc atttctagta ttaatcacac
     1261 aaatgctttt attcttaaaa gttttatttc tatctattac acaaattgaa ccatctttta
     1321 ttattggttc catactctct ccgtaacaag taataaactc acattcttta cttccaaaaa
     1381 agtttaaaac cttttcgtcg atgattaaat cagagctatc aatcaaatca tttataccac
     1441 ctccgcctaa acttgcattt gttttataaa gctttaaaat tttatacttg ttttcacatt
     1501 ctaattgatc ttttggggaa cttccataga agaaataatt aatgcttata tttctttgat
     1561 ttaaaaagtt taggatttgt ggatatggaa tggagtttct aaatttca
//
LOCUS       DAEBKH010000181         1605 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.183, whole genome shotgun sequence.
ACCESSION   DAEBKH010000181 DAEBKH010000000
VERSION     DAEBKH010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.183"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..287)
                     /locus_tag="KIL20_001650"
     CDS             complement(<1..287)
                     /locus_tag="KIL20_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721660.1"
                     /translation="MDYNVFLLNIQDKINQEDFFNLKLKFEQLQNKKEALSNLVFLRL
                     QDPIKPLIMSMICGFLSLGWLAIDRFMIKDYALGILRIILSLFPCVLFLILG"
     gene            complement(337..690)
                     /locus_tag="KIL20_001651"
     CDS             complement(337..690)
                     /locus_tag="KIL20_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002920535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721661.1"
                     /translation="MKCFNAKFMFVGILAVFLSACSSGIPKCSDQDVQNVLTEIILEH
                     NFGRFSEVDRKKLKFTYSGFMSDLTDKESKTQYCKAQVKANGSIDSRPYKWDAWIEYF
                     ARYTDDGMVYVEITR"
     gene            complement(942..1364)
                     /locus_tag="KIL20_001652"
     CDS             complement(942..1364)
                     /locus_tag="KIL20_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721662.1"
                     /translation="MDFNSVLFSIGDKLPKDATSTVMLKKKFDRLNEDKQKEVVAQLP
                     MIKLKSPALVFWVGTFLFGAFGVGRFMIGDWVLGLIRLGITIVAMICGVLMITYSALG
                     IIYGLLWLVNWIWWIVDMFLVGKKLRKQNFEKIANIIQ"
     gene            1531..>1605
                     /locus_tag="KIL20_001653"
     CDS             1531..>1605
                     /locus_tag="KIL20_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HBD2721663.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRK"
BASE COUNT          603 a          291 c          157 g          554 t
ORIGIN      
        1 cctagtatca aaaataacac acaaggaaat aaagataata ttatacgcaa tattcctaat
       61 gcatagtctt ttatcataaa tctatcgatt gccaaccaac ctaaacttaa aaaaccacat
      121 atcatactca taattagagg ttttatagga tcttgaagtc ttaaaaatac caaatttgat
      181 aaagcttctt ttttattttg taattgttca aacttaagct ttaaattgaa aaaatcttct
      241 tgatttattt tatcttgtat atttaaaaga aaaacattat agtccatatc cagtctcctc
      301 aaaattaact ttttaaggca tttttgcctt aaaaagttat ctggtaattt ctacatatac
      361 cataccatca tcagtatatc tagcaaaata ctcgatccaa gcatcccatt tgtaagggcg
      421 agaatcaata cttccatttg cttttacttg agctttacaa tactgtgttt tactttcctt
      481 atcggttaaa tcgctcataa aaccgctata agtaaatttc aactttttac gatcaacctc
      541 agaaaatcta ccaaaattgt gttctaaaat aatctcagtt aaaacatttt gtacatcttg
      601 atcactacat tttggaatac cgctactaca agcactcaaa aatactgcca aaattccaac
      661 aaacataaat ttcgcattaa aacatttcat taatttcctc cttttttgtt cacctaaata
      721 atattttagt ttctcttcat ctgtaccaag ttcaccattt tacttgtaat ctctaaaaaa
      781 acctgtgcaa tatttagagc aacagacaaa atatttaaaa gcaattttct ttattgctta
      841 agaattctaa acctcacttg ccacaaaaac aaaatttact aaaaacttga taaaaatatt
      901 ttgcaaactt atttttgatt gtttttcata aaaactcgaa attattgtat aatatttgca
      961 atcttttcaa aattttgttt tcttaatttt ttacccacta aaaacatatc tacaatccac
     1021 caaatccaat taacaagcca caacaaacca tatattatcc ctaaagcact atatgtaatc
     1081 attaaaacac cgcaaatcat agctacaatt gtaattccca agcgtataag ccctaaaacc
     1141 caatctccta tcataaaacg acccactcca aaagcaccaa ataaaaaagt ccctacccaa
     1201 aatactagag cgggactttt tagctttatc attggaagct gtgctactac ttctttttgt
     1261 ttatcctcat ttaagcgatc aaatttcttt tttagcatca cggtagatgt tgcatctttt
     1321 ggcaatttat cgccaatgct gaaaagaacc gaattgaaat ccataactac tccttgaaaa
     1381 ttaaaaaata tctcgaatta ttccatacta taacttaatt aatattgaaa tattaaatat
     1441 attttatata aaagattgaa tatttcaagt gtttttaata aagaaatttt aatgtaaaat
     1501 tttttaaagg ctaaattttt aaggtaaaaa atgacaaaaa agagcaagcg tgatatggca
     1561 tatgaactag acattgatgt tagcacttta tataattgga gaaaa
//
LOCUS       DAEBKH010000182         1597 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.184, whole genome shotgun sequence.
ACCESSION   DAEBKH010000182 DAEBKH010000000
VERSION     DAEBKH010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.184"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            23..397
                     /locus_tag="KIL20_001654"
     CDS             23..397
                     /locus_tag="KIL20_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HBD2721664.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERARSEIFFNKKVDIFDAS
                     KGHFLLAKANCNFLKPAKLGDMIEIKTKILEVKNASVEILQEIYKDEILLFKMELTLA
                     FIKNEKPARMDMQLKKLFEELF"
     gene            complement(389..1579)
                     /locus_tag="KIL20_001655"
     CDS             complement(389..1579)
                     /locus_tag="KIL20_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721665.1"
                     /translation="MKKIFLIFFLSCFLLNAKEQKLVDVKPVENFYPKLSVQECNTNC
                     LFDLLESRLYLSFLSEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEK
                     TIKSYSNTIINSSIAYLLRQRAEIKVKVFLTGTEDSDKIRAALDAAQAQGYQYAIAGF
                     TLKGANELKNYSGNMKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAI
                     FSDGSALSSNLNSRILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNTPLIKT
                     ALASSQLRIYNIHPYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNE
                     IFNQSIDYNWIAYATSIGVDYFYTEFLNKKSESLFDEKIKNSQVDYKVRLMQGKQASF
                     EELK"
BASE COUNT          545 a          194 c          258 g          600 t
ORIGIN      
        1 aaatattttt taaggtaaag cgatgaaaat gcgtgtgtat tatgaagata ctgatgcggg
       61 tggagtggtg tatcatagta attatttaaa attttgcgag agagcaagaa gtgaaatttt
      121 tttcaataaa aaagtagata tttttgatgc gtctaaggga cattttttgc ttgcaaaagc
      181 aaattgtaat ttcttaaaac ctgcaaaact tggagatatg atagagatta aaacaaaaat
      241 tttagaagtc aaaaatgctt ctgtggaaat tttacaagaa atttataaag atgaaatttt
      301 gctttttaaa atggaattaa ctttagcttt tattaaaaac gaaaaaccag ctagaatgga
      361 tatgcagtta aaaaagctct ttgaagaatt attttaattc ttcaaagctt gcttgtttgc
      421 cttgcataag acgcactttg taatcaactt gagaattttt gattttctca tcaaataaac
      481 tttcgctttt tttatttaag aattcggtat aaaagtaatc aactcctata ctagtagcat
      541 aagcaatcca gttataatct atactttgat taaaaatttc attaagatag actaagttat
      601 catcgtggtt attgatggaa ttagcaatga tgaaattttc tctatctcct tgttgtgtta
      661 aacttaaaaa tgttggatta tagttgattt gagtggataa aagcacataa ggatgaatgt
      721 tataaattct tagttgagaa cttgctagag ctgttttgat caatggagtg ttaaaaaata
      781 ttgaggcatt attaactcca ccttgtgatc ttaaaagcct gctaaaatca agcttctcgc
      841 cttctatggt atatattcta gcattattat tttgagcaag aattcttgaa tttagattgc
      901 ttgataaagc agagccatcg ctaaatattg cgatattagc atttgatttg cttaaaagtg
      961 tggcaatttg agcatcatag tcaatacttc caaaaataat attttgattt gaaatttgta
     1021 tgttgttttt atggatagtt ggtatgaaaa ttttcatatt tcctgagtaa tttttcaact
     1081 cgttagcacc ttttagagta aatccagcta tggcatactg atatccttga gcttgtgctg
     1141 catcaagtgc ggctcggatt ttatcactat cttctgtgcc ggttaaaaaa acttttactt
     1201 tgatttcagc tctttgtctt aaaagataag ctatgcttga atttattata gtatttgagt
     1261 aactttttat agttttttct gggataatta tcgcaagttt aacagaagta attttttgaa
     1321 catttttttc aaaatcagta atggaattta ataattttgc ataaacatta gatagaaatt
     1381 gatcgttttg atctgcaaat tcacttaaaa aactgagata caatcttgat tctaaaagat
     1441 caaaaagaca gtttgtgttg cattcttgaa cgcttaattt aggataaaaa ttttcaacag
     1501 gttttacatc gactaatttt tgctcttttg cattaagcaa aaagcaagat aagaaaaata
     1561 ttagaaatat ttttttcata aaaatccttt aattttt
//
LOCUS       DAEBKH010000183         1593 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.185, whole genome shotgun sequence.
ACCESSION   DAEBKH010000183 DAEBKH010000000
VERSION     DAEBKH010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.185"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..259)
                     /locus_tag="KIL20_001656"
     CDS             complement(<1..259)
                     /locus_tag="KIL20_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD2721666.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYD"
     gene            complement(252..>1593)
                     /gene="mshL"
                     /locus_tag="KIL20_001657"
     CDS             complement(252..>1593)
                     /gene="mshL"
                     /locus_tag="KIL20_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HBD2721667.1"
                     /translation="FDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSV
                     NIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASV
                     DAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIEKEIIVLLKNSHEDYEAKTPIINPN
                     AGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFNIG
                     LNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNN
                     QQAIISVGDTINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLR
                     INPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEK
                     NSINFLSKIPILGSLFKGEVLNSKVTEIVFIITPSIVDSVNAPSLKDLGFKHYE"
BASE COUNT          540 a          259 c          182 g          612 t
ORIGIN      
        1 aatcatacat tcctacttca tcaagaatga ttaaactctg accttgtgaa atcaaaaact
       61 caattttttc ttttaagaaa ctctgatctt taaaattttc attaataaaa tcaacattat
      121 atttttttgc caatctttgc aacaatacac ttttaccact accacttttt ccccataaaa
      181 aaataaaagc tttttggctt tctaaaattt gattgatttg atgaaaaatt tcttctctaa
      241 atggaataat tttactcata atgcttaaat cctagatctt taagacttgg agcgtttaca
      301 ctatctacta tacttggagt gataataaaa acaatttcgg ttactttaga atttaaaact
      361 tctcctttaa acaaagaacc taggattgga atttttgata gaaaattgat agaatttttc
      421 tcattagatt tatcgtgaga aatcaatccg cctaaaatta aagtttgatt attctctact
      481 tgcacaacac tagaaagctt tttttgtatg gtatcaggag caatagttct tggttctttt
      541 tgtcgtttat tatcttctgg atacttaaaa tcacttaagc ttggattaat cctaagcatt
      601 atttttccat catcagaaat ttcaggcaag atattgagta aaatgcctac aaaaatagaa
      661 taattattat aactttcact aacagtagtc ccattttcag tgcctttaga actttcttta
      721 acttgataat ttatagtatc gcctacagaa ataatggctt gttggttatt taaagccata
      781 agctttggat tagaaagcac gctagttttt ccattttgag aaaggaagtt aataatagaa
      841 tcaaaattta aattcgccct taaacccaaa ttcttaacaa aaccttgccc attttgaaac
      901 tgaataaaag aattttcatt atttacttgc gaatttaaac ctatattaaa attttgccaa
      961 ttaatcccac tagaatgact ttcatttaaa ctcacagcaa gtatgctaac atcgataata
     1021 acttgttttt taagacgatt ttctagtttt tgcaaataat ttttcacact ttttaactga
     1081 gaatttgttc cagttactat aataagacct gcattgggat ttataatggg agttttagcc
     1141 tcataatctt catgagaatt ttttaataat acaataatct ctttttctat attttgccaa
     1201 aaatcaaatt tttccatact tttaatcata ttgtcttctg cgtcatcaaa actaccgcta
     1261 tattcacttt gccttggttt agcgtctaca gacgctttag ttatgctttg tccttctctg
     1321 atagaagtga tataacttat cttaaaaatc ttcgtattaa tgcctgaaat tcttaaaatt
     1381 ttaccatcaa aatcatagct aagatcatgc tctttgataa aaaaattaaa aatttcgtct
     1441 aaactcattt gatgaatatt gacagagttt tgcaatgttt ctaatttttc tttggcaatt
     1501 ttatctttaa caataatact aaaagaacaa tattttgcaa gctcatcaag actttcttgt
     1561 atgcttaatt tttcattaat actgatatca aaa
//
LOCUS       DAEBKH010000184         1563 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.186, whole genome shotgun sequence.
ACCESSION   DAEBKH010000184 DAEBKH010000000
VERSION     DAEBKH010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.186"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..526
                     /locus_tag="KIL20_001658"
     CDS             <1..526
                     /locus_tag="KIL20_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD2721668.1"
                     /translation="AKKIKDKRQKIKKELRSYVVQDKIIFSSHFTRFFFYFLKPNEKL
                     ILQNRYKEVLECIKEKFELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLYYQD
                     ENLCFVGEVKFKNKKICKNILNLLKSKAKSLNLAPNYYIIISKNGFSKEFDKICEQNL
                     LLLDLNDFKILLEE"
     gene            530..1549
                     /gene="flgS"
                     /locus_tag="KIL20_001659"
     CDS             530..1549
                     /gene="flgS"
                     /locus_tag="KIL20_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HBD2721669.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSAIDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASCDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
BASE COUNT          592 a          173 c          266 g          532 t
ORIGIN      
        1 agctaaaaaa ataaaagata aaagacaaaa aatcaaaaaa gaactaagat cttatgttgt
       61 ccaagataag attatattta gcagccattt tactcgtttc tttttttatt ttttaaagcc
      121 caatgaaaag cttattttgc aaaatcgtta taaagaagtt ttagaatgta ttaaggaaaa
      181 atttgaactt tatcaaagtt tttgttttga acagctttct agagaattgc ttgagaaaaa
      241 attcaatatc aatggagtgc aaagttactg ggataagaat ttagaacttg atctttatta
      301 tcaagatgaa aatttgtgtt ttgtcggaga ggttaaattt aaaaataaaa aaatttgtaa
      361 aaatatttta aatcttttaa aatcaaaagc aaagtcttta aatttggctc caaattatta
      421 cattataatc tcaaaaaatg gttttagcaa ggaatttgat aaaatatgtg aacagaattt
      481 gcttttactt gatttgaatg attttaagat tttattagag gaatgataaa tgaatgaaag
      541 tattttaaaa agtttagact caaatgaaaa agaaacccta caaaaaggct tagaaagtct
      601 tatagaacaa acttatgtaa tagaaaatga atacaaaact ttaaatgaaa actataattc
      661 cttacgcgca atggttgatg agattataga ggtgttgcct agtgcacttt ggattttaga
      721 taaagaaaaa aatattattt tacaaaatca agaagccttg aaaaatccaa aattacttag
      781 tatcattagt ctggataaaa ttcgtgatga gcttgaattt gaaggtaggt tttatgcggt
      841 aaaaatcata gcacataatg aaaaaactat agtttcagct atagatatta gcgatgaaaa
      901 acgcaatgaa aggcttgcaa gtatgggtag tgtagcggct catttggcac atgagataag
      961 aaatcctatt ggatctatat ctttacttgc ttcaactctt tttgctcgta gtgagcttaa
     1021 aaataagcat atagttcttg aaatccaaaa ggctattgct agagtagagc gtatcgtaaa
     1081 ttcaacttta ctttttacta agggtgtgca catcaatgct ttaaatttta atcttttaga
     1141 gttaaaagaa gagtgtgaaa gtgccattaa ctcttataat ttcacttctc aaatagactt
     1201 tgaaatatct tttttggata agcagatttg tgctgataaa gctcttcttg gtttggtttt
     1261 gcaaaatttg atttataatg ctattgatgc gatagaagaa agcgaatgtg aaaagcctat
     1321 gattaaaatt ttagcaagtt gtgataatga aaaaatatgc atcagagtgt atgataatgg
     1381 ttgtgaaata aaagatgaga aattggtttt tgaagctttt aaaacaacaa aacttaaagg
     1441 caatgggctt ggcttgtctc tttctaaaga aatcataaac gctcataagg gagagttaag
     1501 ttttcaaagc gatcctaaga atttttattt taccttgcct ttggtgtgat aaatattttc
     1561 ttt
//
LOCUS       DAEBKH010000185         1457 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.187, whole genome shotgun sequence.
ACCESSION   DAEBKH010000185 DAEBKH010000000
VERSION     DAEBKH010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1457
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.187"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            723..951
                     /locus_tag="KIL20_001660"
                     /pseudo
     CDS             723..951
                     /locus_tag="KIL20_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881942.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
     gene            955..1314
                     /locus_tag="KIL20_001661"
     CDS             955..1314
                     /locus_tag="KIL20_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HBD2721670.1"
                     /translation="MKDLDYYLNLPYEIIIKKLDEKDGGGYFARYKDFPYIMGDGENE
                     IEALKDLKEAFKGALEVMLEKGDYIKEPIDNEAKIRINITLPKSLVEAIDTISDNRSK
                     FLADLANSAIKSYKIST"
BASE COUNT          624 a          177 c          215 g          441 t
ORIGIN      
        1 acaaataatc aataagatga taaaacattt attcaaaaat actataatta aagcatatta
       61 ggcatggcta ctctttcggt tacaagaaag agacatgatg agtaagatca ttgaattttt
      121 agttcttgtc ttagaattaa ttaatgagat aatcaagctc atttgatata atcattgaaa
      181 aattttataa aaaccacgct tagtctaagc ttaatacatt tatactaaaa aacatttaac
      241 cgaaagagac gtggctttcg gttatgagaa attcatagca aaaatacttt tacaaaaaaa
      301 tagaaaagat tggtaaaaaa ttagaaaagc aaaaaacaag attcgctata ataaaaaatc
      361 cgccttgagt tttcactctt ggcggaaatt tatcaatcaa ggctaactat gaaacgacat
      421 agtaagcgtt ttgtgagatt atatctaaac tttaggtttt ttaagtttaa aatggaagta
      481 tttttaacaa aaccgcagga cagaaaagcc ccttgccttt gttagtacat gaaactacaa
      541 attctcattc atttttccaa gtcaaataaa aaagaaatcc gtttcaaaac gcagctcaat
      601 aatctcagtc ttaatacttt caattaaaca tacaaagaca acaagattaa aagaattgcg
      661 atcggtttat aagtgatact taataaaaag tgtgtataat acatactcat aaggatatta
      721 tagtgagtaa aaaagataaa attattaaag atttaaaaaa taatcctaac aatgtgcgct
      781 ttgaaacgct taagatttta ttagaaagcg aaggttatga atgttttaat aaaggcggat
      841 cacattatca attcaagaaa agaagaatgt gatcttatta ctattccatt taaacgccct
      901 ataaaggcta tatatgtcaa aatggtttta aaagctataa caggagaatg aatgatgaaa
      961 gacttagatt actatcttaa tctaccttat gaaattatta taaaaaaact tgatgaaaaa
     1021 gatggcggag gatattttgc aagatataaa gatttccctt atattatggg agatggtgaa
     1081 aatgaaatag aagccttaaa agatctcaaa gaagcattta aaggagcatt agaagttatg
     1141 cttgaaaaag gtgattatat taaagaacct attgataatg aagcaaaaat tagaattaat
     1201 attaccttgc ctaaaagctt agtagaggca atagatacaa taagcgataa tagaagtaaa
     1261 ttcttagctg atcttgcaaa tagcgctata aagtcttata aaataagcac ttaaaaattg
     1321 acatagttaa ataaaaaaaa gaaatccgtt tcaaaccact aaaaaatagg cattttatag
     1381 caaaaatact ttcaaaattt attaaaatat ggtataattt tattaaaaat atgaataagt
     1441 tattagtcaa ggagtaa
//
LOCUS       DAEBKH010000186         1432 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.188, whole genome shotgun sequence.
ACCESSION   DAEBKH010000186 DAEBKH010000000
VERSION     DAEBKH010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1432
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.188"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..243)
                     /locus_tag="KIL20_001662"
     CDS             complement(<1..243)
                     /locus_tag="KIL20_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721671.1"
                     /translation="MKKCILFFFSLYSLSFANIYEKLNDFAYEKKPNKDFKIQEVKLV
                     QFSQENKDCLELLIEAGQVRILNSYNSCQKLSKDESF"
     gene            complement(240..482)
                     /locus_tag="KIL20_001663"
     CDS             complement(240..482)
                     /locus_tag="KIL20_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721672.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKREKLENAIEA
                     YIDNIDNVLENSNKEGVDEILEVVEFLKNKYKDFFQ"
     gene            complement(466..>1432)
                     /locus_tag="KIL20_001664"
     CDS             complement(466..>1432)
                     /locus_tag="KIL20_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HBD2721673.1"
                     /translation="RFYNSNYGKEINENFNSIIGDIEKDENFGKAIILITDLNLNLNQ
                     CEEFEKICKEKNIKIFLLDHHQSGEECAQKYSWYLLDSKRCATKIVYDFFSKICTPVL
                     ELSKFVDVVNAVDIWLSEDENFELGKVFLGLIANAKEINRVMFKESQIDYMFFLLDKA
                     WKFIGKENANILLDNATHFIKKDYFARKNDDTLSNLISYFVVEKLSELKENFSIEYEG
                     HKGILTSNIGNTSVIGNDFLVKNPDYDFFIDVSSRKTLSFRANGKIDVSLMAKNLVGG
                     GGHKNASGGLFATFKDGANYNYIKAQIIDLIKSKELKKENNESKQ"
BASE COUNT          502 a          230 c          135 g          565 t
ORIGIN      
        1 aaaactttca tctttagata atttttgaca agaattatag ctatttaaaa ttctaacttg
       61 accagcttct attaaaagtt caaggcaatc tttattttct tgtgaaaatt gcactaattt
      121 aacttcttga atcttaaaat ctttatttgg ttttttttca taagcaaaat catttaattt
      181 ttcataaata ttggcaaaac ttaaagaata taaactaaaa aaaaataaaa tacacttttt
      241 cattgaaaaa aatctttgta tttatttttt agaaattcca caacttctaa aatttcatca
      301 accccttctt tgttggaatt ttcgagcaca ttatctatat tatcaatata agcttctatt
      361 gcattttcta atttttctct tttaactcca gcgtataaaa gcatagcttc taaaactatg
      421 ctaagctcat attgtaaatc ttctagttca ttttttaagg ttttattatt gttttgattc
      481 attgttttcc tttttaagtt ctttgctttt aattaaatca ataatttgag ccttaatata
      541 attataattt gccccatctt taaatgtcgc aaaaagtcca ccactagcat ttttatgtcc
      601 accgccacct actaaatttt tagccattaa acttacatct atttttccat ttgcacgaaa
      661 acttaaggtt tttctagaac taacatcaat aaaaaagtca taatcaggat tttttactaa
      721 aaaatcattt ccaataacag aagtattgcc tatatttgaa gttaagatgc ctttatggcc
      781 ttcatattct atactgaaat tttcttttag ctcacttagt ttttcaacta caaaataaga
      841 aattaaatta gaaagagtat catcattttt tctggcaaaa taatcctttt ttataaaatg
      901 agtagcatta tcgagtaaaa tatttgcatt ttcttttcct ataaatttcc aagccttatc
      961 aagcaagaaa aacatataat cgatttgaga ttctttaaac atcacacgat ttatttcttt
     1021 tgcattggca atcaagccta aaaaaacctt tccaagttca aaattttcat cctcgcttag
     1081 ccaaatatca acagcattaa ccacatcaac aaattttgaa agctctaaaa caggggtgca
     1141 gattttagag aaaaaatcat aaacgatttt agttgcacat cttttagaat caagtaaata
     1201 ccaagaatat ttttgagcac attcttcgcc actttgatga tgatcaagaa gaaaaatttt
     1261 aatatttttc tctttgcaaa ttttttcaaa ttcttcacat tgatttaaat ttaaatttaa
     1321 atctgttatt agaataatag cttttccgaa attttcatct ttttctatat cgcctataat
     1381 agagttaaaa ttttcattaa tttctttacc ataattagaa ttataaaatc tc
//
LOCUS       DAEBKH010000187         1386 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.189, whole genome shotgun sequence.
ACCESSION   DAEBKH010000187 DAEBKH010000000
VERSION     DAEBKH010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1386
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.189"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(92..259)
                     /locus_tag="KIL20_001665"
                     /pseudo
     CDS             complement(92..259)
                     /locus_tag="KIL20_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297138.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
     gene            243..686
                     /locus_tag="KIL20_001666"
     CDS             243..686
                     /locus_tag="KIL20_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HBD2721674.1"
                     /translation="MIFFNNLQRDANFYSIPKLNVSASTSGDNELIGLEGYETGEMLE
                     LSKAFFKTTPKNMKAIKVDGYSMVPMLLPDSWVVFEETHKYQGDGLYILNFDNQLMVK
                     LLQLDPISKVLDIISVNKDYKSYSLDLKDSQVELIIQGKVLRFII"
     gene            860..1165
                     /locus_tag="KIL20_001667"
     CDS             860..1165
                     /locus_tag="KIL20_001667"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721675.1"
                     /translation="MQKIDENFKKEKEQNKDLELNKFQITSREIFTIKTPENKDVEVE
                     LTCTAGLIQTSQINYEEIVRKEFLYKCFPVTWNDFLKLNKYEKNWHIQLKIVMILDC"
BASE COUNT          543 a          164 c          208 g          471 t
ORIGIN      
        1 aaatccttaa attattttta attttaaagg tactttacca tatttttaca aaattaaata
       61 ttaaagagag tatttttact ctcttagctt gctaaaaatt cataatcaaa agctctttac
      121 tttcttttct ttttaaaaca ttattattta aagaatacct tacttttaat tccttaatat
      181 taaaatcttt ataaagctct cttataagct cacaatcatt ataagaaagc ataaatttac
      241 ccttgatatt ttttaacaac ttgcagcgag atgctaattt ttattcaata ccaaaactta
      301 atgtttcggc ttctaccagt ggtgacaatg agttaattgg gctcgaagga tatgaaacag
      361 gtgaaatgct tgagcttagt aaagcctttt ttaaaacaac gcctaaaaat atgaaagcta
      421 ttaaagttga tggttattct atggttccaa tgcttttacc tgatagctgg gttgtttttg
      481 aagaaacgca taagtatcaa ggagatggat tgtatatttt aaattttgat aaccaattaa
      541 tggttaaact tttgcaatta gatccaataa gtaaagtttt agatattatt agtgtaaata
      601 aggattataa aagctatagt ttggacttaa aagactcgca agttgagctg attatacaag
      661 gcaaagtttt gcgttttatt atataattta aaggaattaa agtgaatatt gtgttgctaa
      721 tattaataag tatctttatt ttcttttatg taattattta tatagaaaaa taaaaggaac
      781 accaaataag ccgctaaaag aaatttggaa tgaatataag caggaaatgc aaaaaatcaa
      841 cgaagagcat aggtaaaaaa tgcagaaaat tgatgaaaat tttaaaaaag aaaaagagca
      901 aaataaggac ttggaactta ataaatttca aataacctca cgcgaaattt ttaccataaa
      961 aactccagag aataaagatg ttgaggttga attaacttgt acagctggat taattcaaac
     1021 tagccaaatt aattatgaag agattgttag aaaagaattt ttatacaaat gttttccagt
     1081 aacttggaat gattttttaa agcttaacaa gtatgaaaaa aattggcata tacagttaaa
     1141 gattgtgatg atattggatt gttaaaagag gtttatgagc aaatattcaa atatttaaaa
     1201 tgacaaagtg aacttcctga atattttaaa aaagatatac gatctaggaa gagatatttg
     1261 cacgaatttt cggaccccgt tcaaataaaa agcaaattaa gtttaaaagc ttatcgctac
     1321 tatatcgact tctttttaat gaaataccag aaggaagcta ttttcctatg caaacaatgc
     1381 ataggg
//
LOCUS       DAEBKH010000188         1365 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.191, whole genome shotgun sequence.
ACCESSION   DAEBKH010000188 DAEBKH010000000
VERSION     DAEBKH010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1365
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.191"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            89..1153
                     /locus_tag="KIL20_001668"
     CDS             89..1153
                     /locus_tag="KIL20_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HBD2721676.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFRNNTVRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
     gene            1143..>1365
                     /locus_tag="KIL20_001669"
     CDS             1143..>1365
                     /locus_tag="KIL20_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aminodeoxychorismate synthase
                     component I/aminotransferase"
                     /protein_id="HBD2721677.1"
                     /translation="MTLENYAIFGKYFYHDLKHTLKAFNHKESKKCFKFIEKYKNDFY
                     ILMLADYELYRYFQDKNFTSKKAYLSVFAF"
BASE COUNT          534 a          177 c          204 g          450 t
ORIGIN      
        1 tcctaaaaaa gctttttttt actaagttaa tactaaaata ccttttctag ttaaaaagct
       61 aaaaatttta gatttaggaa aagtttttat gaaataccct ttagattgtg aagaaaattt
      121 tgaaaaatca ttcttatttt ggctagcaaa atatgtaaaa tttaaactca actcactatc
      181 taacaaagag ttaaaaaatc cacaagcttt agcagaagtt aattttgctc ttacaaaagg
      241 tgtaaaaaac attgatgaac ttgacgctct agcaaaaaaa gcaagaaatg ctggtttaag
      301 tggagttaat acttatttta atcctttaaa aaaagtattc gaatatttaa atttttacaa
      361 gctttattct ttaaaacaga ttgatgaaga actcattgta gaagttttag caagtataac
      421 aggtgcttta tcagatgcaa gtaaaaaaaa ttaccgtatt gctgtgatta atttttttga
      481 ttttttagac aagcaaaatg aagaagatga aaaagcgcat attttcgata tcaatcttaa
      541 aaactgggca ggtatagcgg gttctaaagg ggtaaaatta cctgaattta tgagcgaaga
      601 agagcttaaa aaatttcttg atgctattga aaatgcagat tttagaaaca atactgtacg
      661 caataaactt attattaaaa tcatcatttt tacaggcata cgggtaagcg aagctatcaa
      721 tatcaaaatg ggtgatatta gcgaagaaaa tgatctttat atcataagaa taagagctaa
      781 aggcaataaa tatcgtgttg taatgataaa aaaagaactt atttacgatt tgcttaaaaa
      841 tgtaagtatt aattatatga gcaaagacgc cctacttttt gtcaataaaa aaggcactcc
      901 actgactcaa tcttatgtca gtcgcatagt agaacagctt ttatttcgtg caggaattcg
      961 caaacaaaaa aatggtgctc acatgttgcg tcatactttt gccaccctac tttataaaaa
     1021 acaaaaagat ttagttttag ttcaagaagc tttagggcat gcaagtttaa atacctcaag
     1081 aatttacact cattttgata acgataaatt aaaacttgcc gcacaggttg caaaggaatt
     1141 aagtgactct tgaaaactat gctatttttg gtaaatattt ttaccatgat ttaaaacaca
     1201 ctttaaaagc ctttaatcac aaagaaagta aaaagtgctt taaatttata gaaaaatata
     1261 aaaatgattt ttatatttta atgcttgctg attatgagct atatagatat tttcaagata
     1321 aaaatttcac aagcaaaaaa gcttatttgt ctgtatttgc tttta
//
LOCUS       DAEBKH010000189         1349 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.192, whole genome shotgun sequence.
ACCESSION   DAEBKH010000189 DAEBKH010000000
VERSION     DAEBKH010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1349)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1349)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1349
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.192"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(183..1133)
                     /gene="waaF"
                     /locus_tag="KIL20_001670"
     CDS             complement(183..1133)
                     /gene="waaF"
                     /locus_tag="KIL20_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HBD2721678.1"
                     /translation="MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTAL
                     FREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLV
                     HLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP"
     gene            1192..>1349
                     /locus_tag="KIL20_001671"
     CDS             1192..>1349
                     /locus_tag="KIL20_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HBD2721679.1"
                     /translation="MPQLSIIIPLFNSCDFILRALQSCINQTLKDIEILIIDDKSKDN
                     SLNMVLEFA"
BASE COUNT          452 a          172 c          223 g          502 t
ORIGIN      
        1 taaaaaaata aactagctaa tattaaaaat atttttgcac ttgtataata ttgcaaagct
       61 tttaatatgt aaaagcctac caaagttaaa ggcaagaagg caaaaataaa agtaaaagag
      121 ctaaaaagca taaacaacct tataaaattt tacaatagtt ttttattcta actaaaattt
      181 ttttatggag tgcttaattt tttaatttct tctatcacct tttcaggctt tagatctttc
      241 atgcatttat ggtgctttaa aggacaggtt ttttgcatac aaggcataca agctagatct
      301 aaatgcacta attttgcgtt ttgattttgc caaggtgaag tttgagtaaa tttcgtaggg
      361 ccaaaaatag ccacggtttt tatcttataa accgtactta tgtgcatagg accactgtca
      421 tttgtgatga aaagatcgca aaaagcgata ttttgacaaa gggttttgat ggtggtttta
      481 ttgcaaagat tttttacttt tatgttttgt tcttttaaaa tttgataaat ttcattacaa
      541 agttcttgtt cggcttttcc tgcgccaaag attaaaattt catgactttg gctgaaattt
      601 aaagccactt tagcaaaata actcgcatcc catctttttg cacttccaaa gcttgcgcca
      661 gggttgagtc ctagaatttt tttaccattt tttaagataa gagggttttg aaattttagc
      721 ttaaagggaa gctttaagtc tttaaaatga gcttttatac taagtgagtt ttctataaaa
      781 taaaggtatt ttaaaacttg atgttcttct ttgtgcttgt ttttgtcaaa aaaatatctt
      841 tgttttgttt tgagaatatg caagataatc ttagaagaaa acgcagatct aaaagcaaag
      901 ctaagatcga ttttaccaag ttctttgcgt aaagataggg cttgtttgta gcgggtttgt
      961 ttattttcta tgatgatttt agaattagga aattccctaa aaagtgctgt ggaaaccaaa
     1021 gagccataaa ggataaattg ggtattttta aaatgttctt ttatagcgta taaagcaggt
     1081 gaagccatca ctgcatcgcc tagccaagtg ggaaggtgta taaaaatttt cataaatttc
     1141 ctaaactttg atagaattgt ttttattatt ttaacaaaat ttaggaaaaa tatgccacaa
     1201 ctttcgatca taatcccgct ttttaattct tgtgatttta ttttaagggc tttacaaagt
     1261 tgtataaatc agactttaaa agatattgaa attttgatta tcgatgataa aagtaaagat
     1321 aatagtttaa atatggtttt agaatttgc
//
LOCUS       DAEBKH010000190         1344 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.193, whole genome shotgun sequence.
ACCESSION   DAEBKH010000190 DAEBKH010000000
VERSION     DAEBKH010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1344
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.193"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..251
                     /locus_tag="KIL20_001672"
     CDS             <1..251
                     /locus_tag="KIL20_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD2721680.1"
                     /translation="DTFKEFKMSEILNSLNINGAFFEFLNDKLKHYEKNQKSKLESLE
                     KVLQSLKNQDANILNSFEENLEKIEKLKQLEMGLLNAD"
     gene            241..>1344
                     /locus_tag="KIL20_001673"
     CDS             241..>1344
                     /locus_tag="KIL20_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HBD2721681.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGCDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLSTEELDNVLNYAKSVFLKYFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     ALKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQNYEKHLLLAYENFLKEIEILN
                     HQILEQLKSISERISSEIFASVKEKDAYFYKESK"
BASE COUNT          529 a          131 c          217 g          467 t
ORIGIN      
        1 ttgatacttt taaagaattt aaaatgagcg aaattttaaa ctctttaaat atcaatggag
       61 cattttttga gtttttaaat gataaattaa aacattatga aaaaaatcaa aaatcaaaat
      121 tagaaagtct tgaaaaagtt ttacagagtc tgaaaaatca agatgctaat attttaaatt
      181 cttttgaaga aaatttagaa aaaattgaaa aattaaaaca acttgaaatg gggcttttaa
      241 atgcagatta atcttttaaa tgattttata aaagcctatg aaaataccta tagtgtgagt
      301 tttgatgata gttttaaagg gcgtattcaa gagctttgta aggaacttaa cgagcctttt
      361 atgcacgcaa gttatgcttt agaaaatgaa ttaaaagagc ttgtgttttc tttggataag
      421 aatgttaata tcgctattat agggcagttt tcaagtggta aatcaagttt gctaaatttg
      481 atattagggt gtgattgttt gcctacgggt gttgttcctg ttacttttaa acctactttt
      541 ttacgctatg caaaagaata ttttttaaga gtagaatttg aagatggaag tgatattatc
      601 acaaatatag aaaaattagc cttttatacg gatcaaagaa atgaagtaaa acaagcaaaa
      661 agtttgcata tttttgcacc tattccttta cttgaaaaaa ttactcttgt agatactcca
      721 ggtttaaatg caaatgaaaa tgatacttta acaactcttg atgagcttaa aaatattcat
      781 ggggcgattt ggttaagttt gattgataat gcaggtaaaa aaagtgaaga agatgccata
      841 aaagcaaatt tggaactttt aggagaaaat agcatttgtg tattaaatca aaaagataaa
      901 ttaagcacag aagaactaga taatgtttta aattatgcaa aaagtgtgtt tttaaaatat
      961 tttaatgagc ttattgctat ttcttgcaaa gaagctaaag atgagcaaag ctatgaaaaa
     1021 tctaattttc aatctttgct tgatttttta actcagctag atacaacagc tttaaaagaa
     1081 aaatttgtta aaagaaaaat tttaaattta tgcgaaattt tagaagatga aaatcaactt
     1141 tttgtaggta tttttgatcg tttattaaat caatttcaaa attatgaaaa gcatttactt
     1201 ttagcgtatg aaaatttttt aaaagagatt gaaattttaa atcatcagat tttagaacag
     1261 cttaaaagca ttagcgaaag aatttctagt gaaatttttg caagtgttaa ggaaaaagat
     1321 gcttattttt acaaagaaag caaa
//
LOCUS       DAEBKH010000191         1330 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.194, whole genome shotgun sequence.
ACCESSION   DAEBKH010000191 DAEBKH010000000
VERSION     DAEBKH010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1330
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.194"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..1150
                     /locus_tag="KIL20_001674"
     CDS             <1..1150
                     /locus_tag="KIL20_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HBD2721682.1"
                     /translation="FFKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPK
                     FRHSMLEINPENASEDSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWM
                     WLIKNNEEDLKTLSQSSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQ
                     KINKQIRDANASQLDVLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNK
                     TRQALILAIARQESRFIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKP
                     EIAYYFGNYHLNYLESRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMEL
                     VPYQESRIYGKKVLANYIVYRHLLNDSIKISDIFENLIQNKANDLNKS"
     gene            complement(1047..>1330)
                     /locus_tag="KIL20_001675"
     CDS             complement(1047..>1330)
                     /locus_tag="KIL20_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721683.1"
                     /translation="ALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLKYIIQNNYTDY
                     FKVSLPNVKEETKLVTKICLDHLPCFELNFQKYPKSLYYRSEDVDTQYN"
BASE COUNT          504 a          195 c          180 g          451 t
ORIGIN      
        1 tttttttaaa ctttataatt attctaaaaa atacgactta gatttaaata caagtttagt
       61 caataaacta ccaaaccaca ttggttttaa agattttgca caaaatatta ttattaaaaa
      121 agaaaatcca aaatttagac attctatgct agaaataaat cctgaaaatg caagtgaaga
      181 ttctgctttc tatttgggag tcaatgcctt aacttatgat aaaacagagc ttgcttatga
      241 cttttttaaa aaggcggcac aaagttttaa atcgcaaagc aataaagaca atgctatatt
      301 ttggatgtgg ttgattaaaa acaatgaaga agatttaaaa actttatcac aaagttcttc
      361 tttaaatatt tatagtcttt acgcaaaaga acttactaac acaccttttc caaagataga
      421 aagccttaat ccaagcaaga aaaaaaataa ttttaatatg caagatcctt ttgcttggca
      481 aaaaataaac aaacaaattc gcgatgctaa cgcaagtcaa ctagatgtct tggcaaaaga
      541 atttgacaca caagaaacct tgcctattta tgcttacata ttagaacgca aaaataattt
      601 taaaaaacat tattttataa tgccttatta tgacaatata aaagactata acaaaacaag
      661 acaagcttta attttggcta ttgccagaca agaaagtcgt tttattccaa ctgctatttc
      721 agtttcttat gctttaggca tgatgcaatt tatgccattt ttagccaatc acatagggga
      781 aaaagaatta aaaattccaa atttcgatca agattttatg tttaaacctg aaatagcata
      841 ttactttgga aactatcatc taaattacct tgaatcgcgt ttaaaatctc cactttttgt
      901 cgcttatgct tataatggcg gtataggatt tactaaccgt atgcttgcaa gaaatgatat
      961 gtttaagaca ggcaaatttg aacctttctt gtctatggag ctagttcctt atcaagaaag
     1021 ccgaatttac ggaaaaaaag ttctagctaa ttatattgtg tatcgacatc ttctgaacga
     1081 tagtataaag atttcggata tttttgaaaa tttaattcaa aacaaggcaa atgatctaaa
     1141 caaatcttag ttacaagctt agtctcttcc ttgacattag gaagagatac tttaaaataa
     1201 tcagtatagt tgttttgtat tatatatttt aagtactcat catccaattt ttcaatattg
     1261 gcttttttat tattgataaa aacttctaaa ttttgaattt ttaatgtatt tggagtaaaa
     1321 gacaaggcca
//
LOCUS       DAEBKH010000192         1329 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.195, whole genome shotgun sequence.
ACCESSION   DAEBKH010000192 DAEBKH010000000
VERSION     DAEBKH010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1329
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.195"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            99..1280
                     /locus_tag="KIL20_001676"
     CDS             99..1280
                     /locus_tag="KIL20_001676"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721684.1"
                     /translation="MDFIKFLNHFQPISKSSQQASVYKSFKLNLKPKILNEKDENSSS
                     FQDQKTDVAQTMLQRLEDEKVFNQKVSDKVKKAERGMTTIYFRDPITNNLVRSALSST
                     AINKMGIEFDKEDMTKRLDGSYILNGKAENFVAGWYADIAYTRAYVASDRNNDGYLED
                     YELEDTKSGFVAQETNLGLFVQSYTQLNGSVDTLFGFEKDFREMRPDDTKDTDYAGRT
                     IGLELDKMIRKDGDFDGELSFSETGMQAVKTKAPNSGWTESVGILTLTKFDQTNTMEI
                     KDILDKLGKGVKYDDLSEDEKSLLKMQLSDKIFDEVEDKETGNKKLVFNLDKFKIFYE
                     GFVDLFKQRSVKMLGLKPEDATKLNYDNLGEIVNEMKQTYFDTNSTSYGKIADLIKIW
                     A"
BASE COUNT          530 a          132 c          233 g          434 t
ORIGIN      
        1 gtaatagagg ataaaaattt aaaattttct aagttaaaat tacgtaaaat atattagcaa
       61 tatttttgaa aagatgtcga aaatttgaag gcatcaaaat ggattttata aaatttctta
      121 atcattttca acccatatct aaatcttctc agcaagctag tgtatataaa tcttttaagt
      181 taaatttaaa accaaagatt cttaatgaaa aagacgaaaa ttcctcttca tttcaagatc
      241 aaaaaacaga tgtagctcaa actatgcttc aaagattaga agatgaaaaa gttttcaatc
      301 aaaaggtaag tgataaagtg aaaaaagctg aaagaggtat gactactata tattttagag
      361 atcctattac aaataacctt gttcgtagtg ctttaagttc aacagctatc aataaaatgg
      421 gaattgaatt tgataaagaa gatatgacta aaagacttga tggatcatat atattaaatg
      481 gaaaagctga aaattttgtg gctggatggt atgctgatat agcatatact agagcttatg
      541 tggctagcga tagaaataat gatggatatt tagaagatta tgagcttgaa gatacgaaaa
      601 gtggttttgt agcacaggaa acaaatttag gactttttgt gcaatcttat acacaattaa
      661 atggtagtgt agatactcta tttggttttg aaaaagattt tagagaaatg cgtccagatg
      721 ataccaaaga tacagattat gctggtagaa ctataggctt agagcttgat aaaatgataa
      781 gaaaagatgg agattttgat ggagagctta gttttagcga aactggcatg caagcagtaa
      841 aaaccaaagc tccaaattct ggatggactg aaagtgtagg tatattaact ttaactaaat
      901 ttgatcaaac taatacaatg gaaattaaag atatcttgga taaattaggt aaaggtgtaa
      961 aatatgatga tttaagtgaa gatgaaaaat ctctacttaa aatgcaatta tctgataaaa
     1021 tttttgatga agttgaagat aaagaaactg gtaataaaaa acttgttttt aatctggata
     1081 aatttaaaat tttctatgaa ggttttgtgg atttattcaa acaaagaagt gtaaaaatgc
     1141 taggtttaaa acctgaagat gcaactaaac ttaattatga caatcttggt gaaattgtca
     1201 acgaaatgaa gcaaacttat tttgatacaa attctacaag ttatggaaaa atagctgatt
     1261 taattaaaat ttgggcttag tttttataat tatcttgtaa agtgtattgt tatttttatt
     1321 ttgatatat
//
LOCUS       DAEBKH010000193         1267 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.196, whole genome shotgun sequence.
ACCESSION   DAEBKH010000193 DAEBKH010000000
VERSION     DAEBKH010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.196"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..>1267
                     /locus_tag="KIL20_001677"
     CDS             <1..>1267
                     /locus_tag="KIL20_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HBD2721685.1"
                     /translation="FESEIELFILALSTIDLSEELCSGKIYLVDIEEERVDIQLLILF
                     DMKDMFEYLSLYEMFVNNVYYKKFYEDIWHKADELCKKNIEVIVRNLNSSLHIAFECY
                     SHLLQNIPSMLESIPFQRILSERKNKFENAIVVSAGPSLAKQLPLLKAYQDKAVIFCA
                     DGALSMLEKEDIVPDYVLNIDFEDLPLRFFQNKENKTSLNMLSCATHPSLVCCLDNKS
                     VVLREDPLYQRFNLNDFGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDEEGNSH
                     SKGFALGERIDHTLNLPVLQVPAYAGKGEVLTHIAWNDYRIKLEYLFACNDQKAKFYN
                     ATEGGARINFTEELSFKECCEKLLTKEKPKFELPKSLTKNRSDKLLVKFKEKIQKDQE
                     NAKRFLDDALALKQILENILSKDFLLPLE"
BASE COUNT          458 a          165 c          213 g          431 t
ORIGIN      
        1 tatttgaaag cgaaatagaa ctttttattc tagctttaag cacgatagat ttgagtgagg
       61 agctttgtag tggaaaaatt tatcttgtgg atatcgaaga agaaagagtg gatattcaac
      121 tacttatact ttttgatatg aaagatatgt ttgagtatct aagtttatat gaaatgtttg
      181 taaataatgt ttattataaa aagttttatg aagatatttg gcataaagca gatgaacttt
      241 gcaagaaaaa tatagaagta atagtaagaa atttaaattc tagcctacat atcgcttttg
      301 agtgttattc tcatcttttg caaaacatcc cttccatgct tgaaagcatt ccttttcaaa
      361 gaatcttaag tgaaagaaaa aacaaattcg aaaatgctat agtagtttct gcaggaccta
      421 gtttagctaa acaacttcct ttacttaaag cttatcaaga taaagcagtg atattttgtg
      481 ctgatggagc tttaagtatg cttgagaaag aagacatagt gcctgattat gttttaaata
      541 ttgactttga agacttgcct ttaagatttt ttcaaaataa agaaaataaa acttctttaa
      601 atatgctttc atgcgccacg catcctagtt tggtttgttg tttggataat aaaagcgtag
      661 ttttaagaga ggatccctta tatcaacgct tcaatcttaa tgactttggt tatatagata
      721 caggcaccca tgtgagtcat ttttcttata ccctagcttt ggctttagga tttaaaaata
      781 ttattatgat agggcaagat ttagcttttg atgaagaagg aaattcacac tcaaaaggtt
      841 ttgctttggg tgaaaggata gatcatactc ttaatttacc agttttacaa gtccctgcct
      901 atgcaggtaa aggagaagtg ttaactcata ttgcttggaa tgattatcgt ataaaattag
      961 aatatctttt tgcttgcaat gatcaaaagg ctaaatttta caatgctact gaaggtggag
     1021 caaggattaa tttcactgaa gaactttcct ttaaagaatg ttgtgaaaaa ctccttacaa
     1081 aagaaaaacc taaatttgaa cttccaaaaa gtttaactaa aaatagaagt gataaactcc
     1141 tagttaaatt caaagaaaaa atacaaaaag accaagaaaa tgctaaaaga tttttagacg
     1201 atgccttagc tttaaaacaa attttagaaa atatactcag taaagatttt cttttacctt
     1261 tagaatt
//
LOCUS       DAEBKH010000194         1109 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.197, whole genome shotgun sequence.
ACCESSION   DAEBKH010000194 DAEBKH010000000
VERSION     DAEBKH010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1109
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.197"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            36..1091
                     /locus_tag="KIL20_001678"
     CDS             36..1091
                     /locus_tag="KIL20_001678"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HBD2721686.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAREIFIAAVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESSFLK
                     TLSSRELAAGMAEFIKMAAMFDDSMLDFIEKIDEKSFLNATCENEIFTQIIARSIELK
                     SRVVEQDEKESGLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGF
                     LDKMQSQKIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLAGPLGKGLI
                     KGDISKEDIIATLREFQ"
BASE COUNT          410 a          112 c          207 g          380 t
ORIGIN      
        1 aaatgtgata gaataaacgc aaaaagagta gttcaatgca agtagaagtt aagttaaaag
       61 aaaatgctta taaggtttat attgatgaac ttgaagaatt agaatttgat agtaaggttt
      121 ttatactttc aaatcctaag atttcaggtc ttcatttgaa aacattactt tctaaaatta
      181 aggcaagaga aatttttatt gccgctgtaa aagatggtga agaatataaa aatttaagca
      241 ccatggaaga aattttaaac caaatgttta attctaaatt ggatagaaaa agcgtgctta
      301 taagttttgg tggtggcgtg attagtgata tgggcggatt tgctgctagt atttatcaaa
      361 gaggcattga ttttataaat attcctacta cacttttagc ttgtgttgat gcagcagtag
      421 gtggaaaaac aggtgttaat aataattttg gtaaaaatct tattggcact ttttatcaac
      481 ctaaagctgt atattgtgag agttcttttt taaagacttt gagctctaga gaacttgctg
      541 caggcatggc tgaatttatt aaaatggcag caatgtttga tgatagtatg cttgatttta
      601 tagaaaaaat tgatgaaaaa agtttcttaa atgctacttg tgagaatgaa atttttactc
      661 aaattatagc aagaagcata gaacttaaat caagggttgt tgaacaagat gaaaaagaat
      721 cagggcttag aatgctttta aattatggtc atacttttgc tcatgttata gaaaatttta
      781 cagattataa gctttattta cacggagaag cggtggctat aggtatggtt atggcaaatc
      841 aattggcttt aaatttagga tttttggata aaatgcaaag tcaaaaaata aaagatattt
      901 tacttaaatt cggtttgcca atatcatata aaatcaacaa tgtagatgaa ttttatgaag
      961 cttttttcat ggataaaaaa agctctaata aaaaaatcaa ttttgttctt gctggccctt
     1021 tgggtaaggg tttgataaaa ggtgatattt ctaaagaaga tataattgca actttaagag
     1081 aattccaatg aaaaaaatta ttattttaa
//
LOCUS       DAEBKH010000195         1100 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.198, whole genome shotgun sequence.
ACCESSION   DAEBKH010000195 DAEBKH010000000
VERSION     DAEBKH010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1100
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.198"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..721
                     /locus_tag="KIL20_001679"
     CDS             <1..721
                     /locus_tag="KIL20_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HBD2721687.1"
                     /translation="FTSFVLLDEVDFNFSELKSILEDKFNIKIADENFTKEGVIFSYE
                     NMLITLNLIKNPIPNHEAEYYANFNFMWKDALEQTKKHKAHLLIAVLSQDQSKLEQAK
                     MFTKIAALCLDNKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYVSVYPSENG
                     VNAYTYGLRNFDKLELEVCDLNIEEKELFFCIYDIVLHILTYDINLKDKDILKFEDGK
                     EIKFIKSQGISVENESLKIIF"
     gene            786..>1100
                     /locus_tag="KIL20_001680"
     CDS             786..>1100
                     /locus_tag="KIL20_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HBD2721688.1"
                     /translation="MKAKLTLLALLGATVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGDWKEVDGKYKALPHTILPSVMKKVSATQPNA
                     QIL"
BASE COUNT          409 a          121 c          183 g          387 t
ORIGIN      
        1 ttttacctct tttgttcttc ttgatgaagt tgattttaat ttttcggagt taaaaagcat
       61 tttagaagat aaatttaata taaaaatagc tgatgaaaat tttaccaaag agggagtgat
      121 tttttcatat gaaaatatgt tgattactct aaatttgatt aaaaatccta tacctaatca
      181 cgaagcagaa tactatgcaa attttaattt tatgtggaaa gatgccttag agcaaactaa
      241 aaaacataaa gctcatcttc ttatagcggt gctaagtcaa gatcaaagca aattagaaca
      301 agctaaaatg tttacgaaaa ttgcagcttt atgtttggat aataaacatg ctttaggttt
      361 ttatacaggt gcagttgttt tagagcccag tttttatata gaaaatgcaa aaatgttaga
      421 tgataatcgc ttgccggtat ataattggat atatgttagt gtttatccta gtgaaaatgg
      481 agttaatgct tatacttatg ggcttagaaa ttttgataaa ttagaacttg aagtttgtga
      541 tttaaacata gaagaaaaag aacttttctt ttgtatttat gatattgttt tgcatatttt
      601 aacttatgat attaatctaa aagataaaga tattttaaaa tttgaagatg gaaaagaaat
      661 aaaatttata aaaagtcaag gtataagtgt tgagaatgaa agcttgaaaa ttatttttta
      721 agtttcacat tcacttcaca gttttgagtt aaactttcgc caaccaagac aaaaaaggag
      781 aaactatgaa agcaaaatta actttacttg ctttgttggg tgctacggtg cttttagcta
      841 aagatatggt tgttcctgct agcgaacttc caaataatgc caaagaattt atttctaaaa
      901 attttaaaac cgctcaaatt ggtttggtga aaaaagatat agattcttat gatgtaattt
      961 taaatgatgg aactgaaatt gattttatga tcaatggaga ttggaaagaa gttgatggaa
     1021 aatataaggc tttaccacat actattttac ctagtgttat gaaaaaagta agtgcaactc
     1081 aaccaaatgc tcaaattctt
//
LOCUS       DAEBKH010000196         1090 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.199, whole genome shotgun sequence.
ACCESSION   DAEBKH010000196 DAEBKH010000000
VERSION     DAEBKH010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1090
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.199"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..333
                     /locus_tag="KIL20_001681"
     CDS             <1..333
                     /locus_tag="KIL20_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WxcM-like domain-containing protein"
                     /protein_id="HBD2721689.1"
                     /translation="NKEIPFEIKRVYYIFDTDPNFPRGAHAHKNLEQVLIMMSGSCDI
                     ILNDGKNCEKICLNRPDMGLYIGKNMWREMKNFSYGAKLLVLASDFYDEKEYIRNYDE
                     FLRNINDT"
     gene            323..766
                     /locus_tag="KIL20_001682"
     CDS             323..766
                     /locus_tag="KIL20_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HBD2721690.1"
                     /translation="MIHKMSDVQSSNIGKNTNIWQFCVVLPNAKIGDNCNICSHCFIE
                     NDVVIGDDVTIKCGVQIWDGITIEDNVFIGPNVTFCNDKYPKSKQYPKEFLKTIIKKG
                     ASIGANATILPGVIIGENAVIGGGAIVTKDIAANTTYYCKIISKQ"
     gene            788..>1090
                     /locus_tag="KIL20_001683"
     CDS             788..>1090
                     /locus_tag="KIL20_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HBD2721691.1"
                     /translation="MSDFCIIGKNINMYLVDDEDAGFIFELRSDVVKNKFLNKIDNDI
                     KKQREWIRLYKKREKNKKEFYFTIRNKNNEKLGLVRLYDFIDDSFCWGSFIIKHGVA"
BASE COUNT          442 a           90 c          207 g          351 t
ORIGIN      
        1 aataaagaaa ttccatttga gataaaaagg gtgtattata tatttgatac agatccaaat
       61 tttccaagag gagcacatgc acataaaaat ttagagcaag tgcttataat gatgagtggt
      121 tcttgtgata taatactaaa tgatggaaaa aattgtgaaa aaatttgttt aaatcgtcct
      181 gatatgggtc tttatatagg taaaaatatg tggagagaaa tgaaaaattt ttcttatgga
      241 gcaaaattgc tagttttggc aagtgatttt tatgatgaaa aagagtatat aagaaattat
      301 gatgaatttt taaggaatat taatgataca taaaatgtca gatgtacaaa gtagtaatat
      361 aggtaaaaat acaaatatat ggcaattttg cgtagtttta cctaatgcta aaataggaga
      421 taattgcaat atatgttctc attgctttat agaaaatgat gttgtgattg gagatgatgt
      481 tacgattaag tgcggggttc aaatatggga tggtataaca atagaagata atgtttttat
      541 agggccaaat gtaacatttt gcaatgataa atatccaaaa tcaaaacaat atccaaaaga
      601 atttttaaaa actataatta aaaaaggcgc gagtattggt gctaatgcga caattttacc
      661 aggtgtaatt ataggagaaa atgcagtgat aggggggggg gctatcgtta caaaagatat
      721 tgcagccaat acaacttatt attgcaaaat tatttcaaaa caataatttt ttacaaggat
      781 tatgcaaatg agtgattttt gcataattgg aaaaaatatt aatatgtatt tagttgatga
      841 cgaagatgct ggatttattt ttgaactcag aagtgatgtt gtaaaaaata aatttttaaa
      901 caaaatagat aatgatataa aaaagcaaag agaatggatt agattatata agaagagaga
      961 aaaaaataaa aaagaatttt attttacaat cagaaataaa aataatgaaa agttaggcct
     1021 agttagattg tatgacttta ttgacgattc tttttgctgg ggaagtttta taataaaaca
     1081 tggggttgcc
//
LOCUS       DAEBKH010000197         1086 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.200, whole genome shotgun sequence.
ACCESSION   DAEBKH010000197 DAEBKH010000000
VERSION     DAEBKH010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1086)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1086)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.200"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..>1086)
                     /gene="ciaB"
                     /locus_tag="KIL20_001684"
     CDS             complement(<1..>1086)
                     /gene="ciaB"
                     /locus_tag="KIL20_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HBD2721692.1"
                     /translation="STQFPNLDDAMEFLRKNHLYQKTPEGEICERSYGVLVRIGNLWK
                     FVPYARFFENEILKLEFAFENMIDQLKIFASNEEEKAYIEYFEKLKLAFCEKDEDRVI
                     KTWQEAEFAWMKVKSPLQVGHPLEYYEDNYTHAVALEWDIRIEDENDFDVLKFGNEIK
                     ESFEHVYKNIGLEDCELEKEVLSNIEKTQLYICTPMIFYGAELKGLFSAQVVPNDEFV
                     SSKAGKKIFAFINFVYENAKTKPFMKISSEVFDKEFLDFGRNILFYQEKIWKRVYEVS
                     TIGHEFGHIFFIANDTEKTMNQSGFFKNIEEYKATTGGLINFFYHEQDDLIMPVFHEL
                     IKRAIGLISWQRVDEVKPYYTEGLIHL"
BASE COUNT          377 a          198 c          103 g          408 t
ORIGIN      
        1 taagatgaat aagtccttct gtataataag gcttaacttc atcaaccctt tgccaagaaa
       61 taagtccaat agctcttttt ataagttcat gaaaaacagg cattatcaag tcatcttgct
      121 catgataaaa gaaatttata agtccacctg tagtagcttt atattcttct atatttttaa
      181 aaaaaccact ctgattcatt gttttttcgg tatcattagc aataaaaaat atatgaccaa
      241 attcatggcc tatagttgat acttcataaa cccttttcca aattttttcc tgataaaata
      301 aaatatttct tccaaaatcc aaaaattctt tatcaaaaac ctcgctagaa attttcataa
      361 aaggctttgt tttagcattt tcatatacaa aatttataaa ggcaaatatt tttttgcccg
      421 ccttagaact tacaaactca tcatttggaa cgacttgagc tgagaataaa cctttaagtt
      481 cagcaccata aaatatcatc ggagtgcaaa tataaagttg agttttttct atattagata
      541 aaacttcttt ttctaattca caatcttcaa gtcctatatt tttataaaca tgttcaaaac
      601 tttccttaat ttcattacca aatttcaaaa catcaaaatc attttcatct tctattctta
      661 tatcccattc taatgccacc gcatgagtat aattatcttc ataatattct aaaggatgtc
      721 ccacttgtaa aggtgatttt actttcatcc aagcaaattc agcttcttgc caagttttta
      781 taactctatc ttcatctttt tcacaaaacg ctaattttaa tttttcaaaa tattctatat
      841 aagctttttc ctcttcgttg ctagcaaata ttttaagctg atcaatcata ttttcaaaag
      901 caaattctaa ttttaaaatt tcattttcaa aaaatctcgc ataaggaaca aatttccata
      961 aatttcctat tctaactaaa acaccatagc ttcgctcaca aatttctcct tctggagttt
     1021 tttgatataa atgattttta cgtaaaaatt ccattgcatc atctaaattt ggaaattgag
     1081 tagata
//
LOCUS       DAEBKH010000198         1042 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.201, whole genome shotgun sequence.
ACCESSION   DAEBKH010000198 DAEBKH010000000
VERSION     DAEBKH010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1042)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.201"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..802
                     /locus_tag="KIL20_001685"
     CDS             <1..802
                     /locus_tag="KIL20_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HBD2721693.1"
                     /translation="VINFAAESHVDNSIKNPDIFIKTNIYGTWNLLNSAYKTWFLEPF
                     LKKDEFKQSFFYQISTDEVYGSLGENGKFTEDNAYAPNSPYSASKASADMLVRSYHHT
                     YGLNAVISNCSNNYGPFQHDEKLIPTIIRNALNNAQIPIYGDGKNIRDWLYVKDHCVA
                     IESIYKYAFEKIKENNSFFDVFNIGTNEEWQNIDIANKICSYLDNVLPKNTSYKEQIT
                     FVKDRAGHDRRYAIDPTKLQRVIGWKAQENFNSGLDKTIQWYIKKYKG"
     gene            805..>1042
                     /locus_tag="KIL20_001686"
     CDS             805..>1042
                     /locus_tag="KIL20_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002891875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FdtA/QdtA family cupin domain-containing
                     protein"
                     /protein_id="HBD2721694.1"
                     /translation="MNYTILKFKTINSKNSILNVHQKDVNCPFEIKRIFYIYDFLNDS
                     IRGDHANLNSEFIFIALNGSCEILIDDGQTKQKII"
BASE COUNT          433 a          116 c          154 g          339 t
ORIGIN      
        1 ggttataaat tttgcagcag aatcacatgt agataattct ataaaaaatc cagatatttt
       61 tataaaaaca aatatatacg gaacttggaa tttattaaac tcagcttata aaacttggtt
      121 tctcgaacct tttcttaaaa aagacgaatt taaacaaagt ttcttttatc aaataagtac
      181 agatgaagtt tatggatctt tgggagaaaa tggaaaattt acagaagata acgcttatgc
      241 tccaaattcc ccttattcag cttcaaaagc aagtgctgat atgcttgtta gaagttatca
      301 tcatacttat ggattaaatg ctgttatttc taattgttct aacaattacg gaccttttca
      361 gcatgatgaa aaacttatac ctaccataat aagaaatgca ttaaataacg ctcaaattcc
      421 aatatatgga gatggtaaga atataagaga ttggctatat gtaaaagatc attgcgtggc
      481 tatagaaagt atttataaat atgcttttga aaagataaaa gaaaataata gcttttttga
      541 tgtatttaat ataggaacaa atgaagaatg gcaaaatata gacatagcta ataaaatttg
      601 ttcttattta gataatgtat tgccaaaaaa tacttcttat aaagagcaaa ttacttttgt
      661 aaaggataga gcaggtcatg atagaagata tgccatagat ccgacaaaat tacagagggt
      721 tataggttgg aaagcacaag aaaattttaa tagcggttta gataaaacta tacaatggta
      781 tattaaaaaa tacaagggtt aaatttgaac tatacaatat taaaattcaa aaccataaat
      841 agtaaaaatt caatattaaa tgtccatcaa aaagatgtaa attgtccatt tgaaattaaa
      901 agaatttttt atatatatga ttttttaaat gattcaataa gaggtgatca tgctaattta
      961 aattcagaat ttatttttat agctttaaat ggaagttgcg aaattttaat agacgatgga
     1021 caaacaaaac aaaaaataat at
//
LOCUS       DAEBKH010000199          981 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.202, whole genome shotgun sequence.
ACCESSION   DAEBKH010000199 DAEBKH010000000
VERSION     DAEBKH010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..981
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.202"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(1..858)
                     /locus_tag="KIL20_001687"
                     /pseudo
     CDS             complement(1..858)
                     /locus_tag="KIL20_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
BASE COUNT          339 a          175 c          112 g          355 t
ORIGIN      
        1 ttttataaac tggagcttct atttgttcta ttggctctcc aacacaagca gtataagccc
       61 cagaaacttt tgtacacaca gcaaatcttt cactaccatc ttttggtcta gtatattcaa
      121 aaggttcaaa attttcttta atttttgcaa gatttgcaat tgcactaata tcataacctt
      181 gttgcaaaag agttttgtct gtagaagcaa atactttatt ttcttcatca aatacaaaag
      241 ttctacctgg taaattctca aattctgctt gcaaatctgt tacaagaaca tccacagcca
      301 aaacccctat aaatttacca tctttaaaaa gaggggtaga atatgtaaaa caaggtaaat
      361 ttgtagttgc atctatataa gatggggtaa cataaagttt atttgttttt actgcttcta
      421 tataatactc tcttgttcta gcatcataat tatcagcttt tccataagtt ccaaaatcta
      481 cttttttagc atcagaatct ggatcactta caacaagttc tccgtttggt tgagcgatat
      541 aaactgctaa aaatcttcca gcatctctaa aattctttaa atcttttcca acataacgca
      601 ttaaagcatc ttgactatct aactgttcta caggatgctt taaaatactt ttagccaaac
      661 tttcaagagc taaagaattt cttgccttaa aagactccat agaattttta gctgttttaa
      721 catagtttgt ttcagctttt acaacttcat gaaaaattgc ttgctttaca aacataaatg
      781 tataacacct aaaattacca aacacactac tgcgattaaa tttgcaatca gtgcaacctt
      841 caattttacg cttttcataa tttaagcgct cctttctaat attattttat agggatatct
      901 acataaagtt ttagaattat aaattaaaaa atttaaattt ttacttaaat ctaaaagtga
      961 taaaaaaatt tcatttaata a
//
LOCUS       DAEBKH010000200          974 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.203, whole genome shotgun sequence.
ACCESSION   DAEBKH010000200 DAEBKH010000000
VERSION     DAEBKH010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 974)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 974)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..974
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.203"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..157)
                     /locus_tag="KIL20_001688"
     CDS             complement(<1..157)
                     /locus_tag="KIL20_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HBD2721695.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVEKFSKI
                     FKNVYVSA"
     gene            219..>974
                     /locus_tag="KIL20_001689"
     CDS             219..>974
                     /locus_tag="KIL20_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HBD2721696.1"
                     /translation="MKYTELLQLQTFFSQFKKIDFIKRINDNILELSFDRKRFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDKKNLIIEALRHIDKSYRVVKPNVILEPLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFK"
BASE COUNT          367 a          120 c          139 g          348 t
ORIGIN      
        1 tcgcactcac atagacattt ttaaaaattt tagaaaattt ctctacttga aattgagtta
       61 aattttgatt tttaagaatc aatttgcttt tatcttgtcc catacgacta gatttgccac
      121 cacataaaat cacgcaattt agctcattaa gctgcacaaa tttccttttt taatgtaatt
      181 ctaccacaaa ttcgccaaaa tattttataa tttcttttat gaaatacaca gaacttttac
      241 aattgcaaac ttttttttct cagtttaaaa aaatcgattt tatcaagcgt atcaatgaca
      301 atattttgga attaagcttt gatagaaaaa gatttatttt tgatcttact cgtgcaatga
      361 gtgcgattta tacagctaaa tttaatgcaa aaaattataa tgcacctttt gattttatgc
      421 ttaaaaagta ttttagcaat gcttttataa aggaagttaa agtccttgaa ggcaatcgta
      481 ttttatgttt tagcgtaaaa gctaataagg cttataaaag ctatgagagc aagatttatt
      541 ttgaatttac gggtaaaaat accaatgtta ttcttacaga taaaaaaaat ttgatcatag
      601 aggctttaag gcatattgat aaaagttatc gtgttgtaaa acctaatgtg attttagagc
      661 ctttaaagcc ttataaaatg gatgaaaatt ttgaggaaat caaagacttt gcagattatt
      721 tttctcgcaa atttacaagc atttatgaga gtaaaatcaa acaaataaaa aatttaaaac
      781 ttgcacaagt agataaaaaa atacaaaatt tacaagaact tttttctagt ctagatgaag
      841 aaaattcttt actcttaaaa gctttagaat acagaaaaag ggctgatgta ttgtttgcaa
      901 atttgagtgt tttaaaagat tatgaaaggg aatttaagct tgatgatttt gaaggcaaag
      961 agcttgaatt taag
//
LOCUS       DAEBKH010000201          973 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.204, whole genome shotgun sequence.
ACCESSION   DAEBKH010000201 DAEBKH010000000
VERSION     DAEBKH010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 973)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 973)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.204"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..>973
                     /locus_tag="KIL20_001690"
     CDS             <1..>973
                     /locus_tag="KIL20_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HBD2721697.1"
                     /translation="KDKPLIQNIALCELKNFSSAKNKISALIKKIEIKSHLDFLKNNI
                     SIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLTQKDADFLVHCLLNSRLSK
                     FLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDENLVEKIDFLCVSAKMASDFYKS
                     LAPKESLQKSGMQEFENYLFNELYAGEKSKIALRAYKKELHLELKNILSEYEMQNRLI
                     KENKQGVSEENQKLLLELQKQNTLLKEAQDEISNSVAKLKNIDSGIDNLVLLLVKKLK
                     ERLIDEFKYLKNNAQKLNLSRILNIVDITTKDGINDILREIKFENIK"
BASE COUNT          394 a          101 c          162 g          316 t
ORIGIN      
        1 tcaaagataa acctttaata caaaatatcg cactttgcga gcttaaaaat ttcagttcag
       61 ctaaaaataa aatttcagct ttaattaaaa aaatagaaat taaaagtcat ttagattttt
      121 taaaaaataa tatttccata gttgatactc cagggcttga tgatgttgta gttcaaagag
      181 aaattgttac aaatgagtat cttagagaaa gtgatttttt aattcattta atgaatgctt
      241 ctcaaagctt gactcaaaaa gatgcagact ttttggtgca ttgtctttta aattcaaggc
      301 tgagtaagtt tttaattgtt ttaactaaag cggatttgtt aagcaaaaag gatttagaag
      361 aagtcattgt ttataccaaa gaaagcttaa aatcaagact tgtggattta gatgaaaatt
      421 tggtggaaaa gattgatttt ttatgtgtga gtgctaaaat ggcaagtgat ttttataaga
      481 gtttagcgcc taaggaaagt ttgcaaaaaa gtggtatgca agaatttgaa aactatcttt
      541 ttaacgagct ttacgcagga gaaaaaagta agattgcctt aagagcttac aaaaaagaat
      601 tgcatttaga gcttaaaaat attctaagcg aatatgaaat gcaaaatcgt cttattaagg
      661 agaataaaca aggtgtaagt gaagaaaatc aaaagctttt acttgaactt caaaagcaaa
      721 acaccttatt aaaagaagca caagatgaaa tttcaaattc cgttgcaaaa cttaaaaata
      781 tagatagtgg catagataat cttgttttac ttttggttaa aaaattaaaa gaacgcttga
      841 tagatgagtt taaatatttg aaaaataatg cacaaaagct taatctttct cgtattttaa
      901 atatagttga tattaccacg aaagatggga ttaatgatat tttaagagaa attaaatttg
      961 aaaatattaa aaa
//
LOCUS       DAEBKH010000202          965 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.205, whole genome shotgun sequence.
ACCESSION   DAEBKH010000202 DAEBKH010000000
VERSION     DAEBKH010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 965)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.205"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..>965
                     /gene="mnmC"
                     /locus_tag="KIL20_001691"
     CDS             <1..>965
                     /gene="mnmC"
                     /locus_tag="KIL20_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HBD2721698.1"
                     /translation="IWYLDGFSPNKNSQMFDENLIFEVARLSKKNTQICTFSSASFLQ
                     KNLKKYGFRVEKTKGFRKREMIKAYLENELEFKDKEAYFSRTFSSLKNKKVAIIGAGI
                     SSAVLAYELSLRGFEIDVFEKHLELGKGASGNESGILSSLILKPKVNLGEFSELSFIE
                     ASRFYRQILDLEFKGVVEFAHNDLMQERFDTQRENVLFKISKNQAFLEEGGVIFPKNL
                     VKNLFEKSKACIYFNHEFQAYKFENECFTLKFKNDIVKSDYAVLIYAMGADTKDFVFY
                     DEMKLSKVRGQVTHLKPFLNTPFPLSSKAYICPVKDDLQVIGASY"
BASE COUNT          356 a           90 c          176 g          343 t
ORIGIN      
        1 atttggtatt tagatggatt ttctccaaat aaaaattcgc aaatgtttga tgaaaattta
       61 atttttgaag tggcaagact ttctaaaaaa aatacacaaa tttgtacctt ttcttcggca
      121 agttttttac aaaaaaattt aaaaaaatat ggctttagag tagaaaaaac caaaggtttt
      181 agaaaaagag aaatgattaa agcttatttg gaaaatgagc ttgagtttaa agacaaagaa
      241 gcgtattttt caagaacatt ttcatcttta aaaaataaaa aagtagctat tattggtgca
      301 ggtatatcaa gcgctgtttt agcttatgag cttagtttaa gaggttttga gatagatgtt
      361 tttgaaaaac atttagaatt aggcaagggt gcaagtggaa atgaaagtgg aattttaagc
      421 tctttaatct taaaacctaa ggtaaattta ggggagtttt cagagctttc ttttatagaa
      481 gcaagccgtt tttatagaca aattttagat ttagaattta agggtgtggt ggagtttgca
      541 cataatgatt tgatgcaaga aagatttgac acacaaagag aaaatgtttt gtttaaaatt
      601 tcaaaaaatc aagctttttt agaagagggt ggagtgattt ttccaaaaaa tttggttaaa
      661 aatctttttg aaaaaagtaa agcttgtata tattttaatc atgaatttca agcttataaa
      721 tttgaaaatg agtgttttac tttaaaattt aaaaatgata ttgttaaaag tgattatgcg
      781 gttttgattt atgctatggg tgcagataca aaagattttg ttttttatga tgagatgaaa
      841 ttaagcaaag taagaggtca agttacacat ctaaaacctt ttttaaatac tccatttcct
      901 ttatcttcta aggcttatat ttgccctgta aaagatgatt tgcaagtgat tggagcaagt
      961 tatga
//
LOCUS       DAEBKH010000203          962 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.206, whole genome shotgun sequence.
ACCESSION   DAEBKH010000203 DAEBKH010000000
VERSION     DAEBKH010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 962)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 962)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..962
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.206"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..893)
                     /locus_tag="KIL20_001692"
     CDS             complement(<1..893)
                     /locus_tag="KIL20_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HBD2721699.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSNTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSIDETNEFLPDHMKISQKEVVSEAMNRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSTQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDTKNT
                     LKNIKNDEFAKNLTEELNIKD"
BASE COUNT          303 a          140 c          124 g          395 t
ORIGIN      
        1 ttatctttta tatttaactc ttctgttaaa ttttttgcaa actcatcatt tttgatattt
       61 tttaaagtat ttttagtatc tgtggtatct tcttctattt ttgatttaac tttatcgttt
      121 ttttcgtgtt tgctttcttt ggatgaaagt atggaatcta aattttttaa agtttgagaa
      181 agcaaagaac cgctatcttt agaatttgtt ttttgcgtag aatgagtgct tgtagtatga
      241 gttgtatttt ctaaattgtg atttaaattt ttactcacat tggaaatttt attattgatg
      301 atttctttaa aaacattatc cacagcaccc ttaaaaaaat cagccttatc taaatttgga
      361 aaagttgctt taagatcaag aagacgatct actttaatat tttttacatt taagcccaga
      421 tctttagcta tgtccaaaag ctcactaaga tttgatgcac cttttaaagc attaaaatta
      481 gcctctgttt taataagact tgaaagttga gtagaaagat ttgctagttt aacatctgct
      541 gtatctgttt ttagcttatc caacaaagaa agaatttgca taaaagaagc agattcgaaa
      601 atgcttatct tatcactctc atcaaaagct cctttttgaa gtctgttcat cgcttcacta
      661 acaacttctt tttgactgat cttcatatga tcaggtaaaa attcattggt ttcatcaata
      721 gaattaagca aagaatttaa aaaactttcc gtatcatctt gagttgaatt tttactatcg
      781 ctactttcat gttctttatt tttactcgtt ttactaaagg aactactagt attagaagtt
      841 ttactcggcg taagatttaa aacatcattt tgcggagcta aatttgacat cacttttcct
      901 tcaaaaaaaa ttattttaaa aatttatcta ccattacatt aggaaatttt tctttcaaat
      961 aa
//
LOCUS       DAEBKH010000204          945 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.207, whole genome shotgun sequence.
ACCESSION   DAEBKH010000204 DAEBKH010000000
VERSION     DAEBKH010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 945)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.207"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..502
                     /locus_tag="KIL20_001693"
     CDS             <1..502
                     /locus_tag="KIL20_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002912515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HBD2721700.1"
                     /translation="NIINHSLIEVQLNTDFKDIKKDIEYERLFYTGAIDEFFDYKFGR
                     LPYRSLNIVFETFDKEYMQSGPQINYPENYDFTRSVEYKYYLDEKSNKTILSYEFPCE
                     YEEGKNERYYPIPNDENQKLYERYLNEAAKLNNVYFLGRLGDYKYYDMDKTVERVLKI
                     VRSELQ"
     gene            499..>945
                     /locus_tag="KIL20_001694"
     CDS             499..>945
                     /locus_tag="KIL20_001694"
                     /inference="COORDINATES: protein motif:HMM:NF025751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4422 domain-containing protein"
                     /protein_id="HBD2721701.1"
                     /translation="MKENEKKIKPSIKILVGYHKPATLIKDDIFTPIHLGKKLSVQSA
                     KDGKISYEDFEWMCENMIGDDTGDNISHLNRYLNELTGIYWAWKNYDKLGNPDYIGYE
                     HYRRHFIFKENIVLPPIGGLENYFHYFDNVSQSYLEIIDLNNFNNIE"
BASE COUNT          379 a           89 c          164 g          313 t
ORIGIN      
        1 aaatataatc aatcattctt tgatagaagt acaattaaat actgatttta aagacataaa
       61 aaaagatata gaatatgaaa gattgtttta tacaggagcg attgatgaat tttttgatta
      121 taaatttgga agattgcctt atagaagttt aaatatagta tttgaaactt ttgataaaga
      181 gtatatgcaa tcaggtcctc agataaacta tcctgaaaat tatgatttta caagaagtgt
      241 tgagtataaa tattatcttg atgaaaaatc taacaaaacc atactttctt atgaatttcc
      301 ttgtgaatac gaagaaggta agaacgaaag atactatcct atacctaacg atgaaaatca
      361 aaaactgtat gagagatatt taaatgaagc tgctaagctt aacaatgtgt attttttagg
      421 taggcttggc gattataaat attatgatat ggataaaact gtggagagag tattgaagat
      481 tgtaaggagt gagttgcaat gaaagaaaat gaaaagaaga taaaaccaag tattaaaata
      541 cttgtaggtt atcacaaacc agcaacttta attaaagatg atatatttac acctattcat
      601 ttgggaaaaa aattatcagt tcaaagtgct aaagatggaa aaatatcata tgaagatttt
      661 gaatggatgt gtgaaaatat gataggagat gacactgggg ataacatatc tcatttaaat
      721 cgctatttaa atgaactaac gggaatttat tgggcttgga aaaattatga taaattaggt
      781 aatcctgatt atataggata tgagcattat agaagacatt ttatttttaa ggagaatatc
      841 gttttacctc ctataggtgg tttggaaaat tatttccact attttgataa tgtcagtcaa
      901 agttatttgg aaattattga tttaaataat tttaacaata tagaa
//
LOCUS       DAEBKH010000205          938 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.208, whole genome shotgun sequence.
ACCESSION   DAEBKH010000205 DAEBKH010000000
VERSION     DAEBKH010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.208"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..543)
                     /locus_tag="KIL20_001695"
     CDS             complement(<1..543)
                     /locus_tag="KIL20_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721702.1"
                     /translation="MSRISLENYLQVHNRYSCLSNDIYLNKKYAELYGETFDFSYSKN
                     GFVFKVVAIKEKIENSQFYDLQSPYGYGGIYCNSQNEDFIKEALKALKTEAFKQNIIA
                     FFIRFHFFDENLKIYSKLLPFFTKSRETIIVNTEKGIDNIRMNYSPRIRSYVKKAREK
                     LQIKFATKKDYKDFFTLYSKT"
     gene            complement(607..>938)
                     /locus_tag="KIL20_001696"
     CDS             complement(607..>938)
                     /locus_tag="KIL20_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HBD2721703.1"
                     /translation="IDNCSLCCNNFTKTKKIFNKAIMKLKINGKFFSSTISKGIEGYD
                     NTNDDFQLPKSGIYTHIGMIRYSNKKDLKKLYKNKYFKWIKLQTQSLEADNKLIDKLF
                     IIEGERI"
BASE COUNT          310 a          133 c          103 g          392 t
ORIGIN      
        1 agttttacta tataatgtaa aaaaatcttt ataatctttt tttgtagcaa attttatttg
       61 caatttttct ctagcttttt tgacataaga tcttattcta gggctataat tcatacgaat
      121 attatcaata cctttttctg tgtttacaat gatggtttct ctacttttag taaaaaaagg
      181 taaaagtttt gaatatattt ttagattttc atcaaaaaaa tgaaatcgga taaaaaaagc
      241 aatgatgttt tgtttaaaag cttctgtttt taaagctttt aaagcttctt tgatgaagtc
      301 ttcattttga gaattgcaat atattccacc atatccataa ggactttgca aatcataaaa
      361 ttgagaattc tctatttttt cctttatggc tacaacctta aatacaaatc catttttact
      421 atacgagaaa tcaaatgttt ctccataaag ttcagcatat tttttattaa gataaatatc
      481 atttgataag caagaataac gattgtgaac ttgcaaataa ttttctaaag aaattctact
      541 catcttccac tccttatagg agttattgat atactccccc cccccagcca taaaatattt
      601 cattaattaa atcctttctc cttctatgat aaataatttg tcaattaatt tgttgtcagc
      661 ttcaaggctt tgtgtttgta gttttatcca tttaaaatat ttatttttgt ataacttttt
      721 aagatctttt ttgtttgaat atctaatcat tcctatatga gtataaatac cactctttgg
      781 aagttgaaaa tcatcattcg tattgtcata tccttcaata cctttagata ttgtgctaga
      841 aaagaatttt ccatttattt ttaatttcat gatggcttta ttgaaaattt tctttgtttt
      901 tgtaaaatta ttacaacaga gtgaacaatt atcaataa
//
LOCUS       DAEBKH010000206          934 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.209, whole genome shotgun sequence.
ACCESSION   DAEBKH010000206 DAEBKH010000000
VERSION     DAEBKH010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..934
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.209"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..>934
                     /locus_tag="KIL20_001697"
     CDS             <1..>934
                     /locus_tag="KIL20_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HBD2721704.1"
                     /translation="THFEDNVYFNNSEFYNYADFHECEFDDIACFYGVKFYKTPNFSA
                     CYFKEPKAVNLINVDIDKLDFKSVEKYIEDNYKDESYKNETKGIQDKKEFFKIKNKHK
                     LRYAKNLKDSFRVIKDVLITQNNTLEAQEWHKLELYAKEKENHINLSVKDREKNADIF
                     KNILIWFNCVLLNVYRNTSDHHNDFLKILNFTVGMIVLYGVFIFFCQACIEPYSKFFN
                     ELKSSVIFIIIGILVFLCCIMFYFNRKKSIFAKSIFFIIAMVFIVLYLVTYFYKTNEY
                     KTILYLVMCYILSIYICYFFFNIKNIIFNIVFKFM"
BASE COUNT          356 a           80 c          132 g          366 t
ORIGIN      
        1 actcattttg aagataatgt ttattttaat aattctgaat tttataatta tgctgatttt
       61 cacgagtgtg aatttgatga tatagcttgt ttttatggag tgaagtttta taaaactccg
      121 aattttagcg cttgttattt taaagaacca aaagctgtaa atttaatcaa tgtcgatata
      181 gataagctag attttaaatc agtggagaaa tatatagaag ataattataa agatgaaagt
      241 tacaaaaacg aaaccaaagg aatacaagat aaaaaagagt tttttaaaat taaaaataaa
      301 cataaattaa gatatgccaa aaatttaaaa gattctttca gggttataaa agatgtttta
      361 atcactcaaa ataataccct agaagctcaa gaatggcaca agctagagct ttatgcgaaa
      421 gagaaagaaa atcatataaa tttaagcgtc aaagacagag aaaaaaatgc tgatatattt
      481 aagaatatat taatatggtt taattgtgtt ttgttaaatg tgtatagaaa tactagcgat
      541 catcataatg attttttaaa aattttaaat tttactgtgg ggatgattgt tttatatggg
      601 gtgtttattt tcttttgtca agcttgtata gaaccttata gtaaattttt taacgaattg
      661 aaatcgagcg ttatctttat tatcatcggt atattagttt ttctttgctg catcatgttt
      721 tattttaata gaaaaaaaag catttttgca aaatcaatat tttttattat tgctatggtg
      781 tttatagtct tatatctcgt aacttatttt tataaaacta atgaatataa gacaatttta
      841 tatttagtaa tgtgttatat attaagcata tatatatgtt atttcttttt taacattaaa
      901 aatattattt ttaatatagt atttaaattt atgt
//
LOCUS       DAEBKH010000207          886 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.210, whole genome shotgun sequence.
ACCESSION   DAEBKH010000207 DAEBKH010000000
VERSION     DAEBKH010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.210"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..494
                     /locus_tag="KIL20_001698"
     CDS             <1..494
                     /locus_tag="KIL20_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HBD2721705.1"
                     /translation="EILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINF
                     ALKNCKLNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGL
                     DKSVIDLIKKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFL
                     SKV"
     gene            complement(481..>886)
                     /locus_tag="KIL20_001699"
     CDS             complement(481..>886)
                     /locus_tag="KIL20_001699"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HBD2721706.1"
                     /translation="YPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSLFSAT
                     GVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFILKKK
                     NPLGAFIHPFVFVLCIAIVILAKLMNYFFIPC"
BASE COUNT          369 a          129 c          116 g          272 t
ORIGIN      
        1 gtgaaatttt aaatactcaa aaaagaatgg atttacttga gctttactgt ggatatggaa
       61 attttacttt agctttagca ccattctttt ttaaagtttt agccactgaa atttcaaaaa
      121 gtaatattaa ttttgcttta aaaaattgca aacttaataa tacaacaaat atccactttg
      181 caagactttc aagcgaagaa ttaagtcttg ctatcaaaaa agaaagagaa ttttttcgtt
      241 taaaagatat tcgattggat gattttaatt tctctcatgt tttagttgat ccaccccgtg
      301 caggacttga taaaagcgta attgacttaa taaaaaaata tgaaaatatt atttatattt
      361 cttgtaatcc tatcacttta aaagaaaatt taaaagaatt aagcctaaca catagagtgg
      421 aagagtttgc tctttttgat caatttgtca atactccaca tcttgaatgc ggagtatttc
      481 ttagcaaggt ataaaaaaat aattcattaa tttagccagt attactatcg cgatacaaag
      541 cacaaataca aaagggtgga taaaagcacc gagtggattt ttcttcttta atataaaatg
      601 acaaaataaa gaaaaaacaa ctaaagataa aattccaaaa gccaaaataa tttttacagc
      661 aaaaagtaaa tttaaaggtt taaaatgaaa acctgccaaa gcacctccgc ttaaaaaaag
      721 caaaagaacc acaaaaggca ttattttaac cccagtagca ctaaaaagac ttttgtcaaa
      781 attaggattt ttctttttaa ctacgcccaa aacaaataca tcaacaaaca aataacctat
      841 aaacaaaata gcacaaagaa gatggattgt taaagtatat ggataa
//
LOCUS       DAEBKH010000208          857 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.211, whole genome shotgun sequence.
ACCESSION   DAEBKH010000208 DAEBKH010000000
VERSION     DAEBKH010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 857)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 857)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.211"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(29..442)
                     /locus_tag="KIL20_001700"
     CDS             complement(29..442)
                     /locus_tag="KIL20_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HBD2721707.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKRIHGFLNA"
     gene            504..>857
                     /locus_tag="KIL20_001701"
     CDS             504..>857
                     /locus_tag="KIL20_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721708.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLVDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSL"
BASE COUNT          328 a          118 c          132 g          279 t
ORIGIN      
        1 gataaagttt tatcatacaa aataagcttt aagcatttaa aaagccatga attcttttaa
       61 gttcttcact aataggcttt ttctttccat ctcttgtaac acttacataa gttactaaag
      121 ccgaagttac attaatgcaa gaagtacaac cttgagaatc cactctttga gctgtgactt
      181 ctacttcaac gctgattgaa gtgttgccca catttacaac tttagagtaa caagaaatta
      241 tatcgcctat aaaaacaggt tctttaaaaa ctactttatc catagagatg gttacaacgc
      301 gttcaggaga aagttctctt gctgcgatag ctcctgctaa atcgatttgt gaaagtatcc
      361 atccgccaaa aatatttccc gctggatttg tgtcacttgg catagctaca atttttaatt
      421 ttggttctcc catatctctc atttttactc cttattttaa aaaatgaatt ataattaaaa
      481 aagttaaaaa ggagaataaa agtatgaata attttaaaga aatagctaaa ttggttagaa
      541 aatacaaaga aagaaataat gcgttatatg agtttttaga caaagaagat gtgggcgagt
      601 attttagatc tttgatttct ttaagcgaat taaaacaaga taaaacaact atgctagcca
      661 tacttaggcg tttggttgat ttaaaggaag aaaatttagt tcaagagtgg aaaaaaaaca
      721 attttaagga agataagatt atagagctaa aacataagtt ctatgaagag gttagaaagt
      781 tttatgaaaa agaacatcaa aatttaatta atgaaataaa agagaaaaaa cttttaaata
      841 atttttatca gtcttta
//
LOCUS       DAEBKH010000209          845 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.212, whole genome shotgun sequence.
ACCESSION   DAEBKH010000209 DAEBKH010000000
VERSION     DAEBKH010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.212"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            1..594
                     /locus_tag="KIL20_001702"
                     /pseudo
     CDS             1..594
                     /locus_tag="KIL20_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            524..>845
                     /locus_tag="KIL20_001703"
     CDS             524..>845
                     /locus_tag="KIL20_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721709.1"
                     /translation="MGVENIYTLPLNGVPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDKRITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGAL"
BASE COUNT          301 a          123 c          135 g          286 t
ORIGIN      
        1 gatggaaaaa ttttttatat ttctgaacat tcttttaagg ataatcaagt ttatgatttt
       61 caagcagaaa tttttaaaaa aaattaatgg aaaaaatttc tatgcttcta agtcaaaata
      121 tcctatatta aatttaacta tgatttataa taaccctaaa tctggaaata aaaatttatg
      181 caagcttgaa attttaactc cggatacttc aaaagaagag atcataacag cttttagcac
      241 tttaggaacc gtatcttcag atactcaagc cgttcctagt tcttttatgc cttttattgt
      301 aacagcttat gctcaaaata caaatgcaac aaataataaa cttatattag aaaatggaga
      361 attatcttct gtgtattttt gcaaaccaag cataggggat tgtggagtac ctaataattc
      421 tcaaaaaggc gatcgtttta agtatttaat tactgcggcg tttactgaca ggggggggga
      481 tttaacaatc aaaccatttt aaaagaaaac tcctatatca ataatgggtg tagaaaatat
      541 ctacaccttg cccttaaatg gagttcctta tatttcagga tctgtagctt ttgatggtga
      601 agctaaagac aataaattaa tcttagagtc aaatacaaaa attgaccttc ataattccca
      661 gtatttttca gatgaagaag gtaaggatat ttatgataaa agaattactc gtttaatggg
      721 agcttttggt ataaattcta atttacaaaa caataaagtt cttatcgatt cagccaatat
      781 cgtccttcat gggccagatg gtgagtatac agctcgttcg acctttgaaa ttttgggtgc
      841 tttag
//
LOCUS       DAEBKH010000210          832 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.213, whole genome shotgun sequence.
ACCESSION   DAEBKH010000210 DAEBKH010000000
VERSION     DAEBKH010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 832)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 832)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.213"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..>832
                     /locus_tag="KIL20_001704"
     CDS             <1..>832
                     /locus_tag="KIL20_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HBD2721710.1"
                     /translation="FINFLDQDNYKENFIKVKEAISKGRVYQINLTQNFKFHSKMDSF
                     ELFKLLLSRQDTEFKAFIKDETREILSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIK
                     DEENKTFLQNDTKNLSENVMICDLLRNDLSKIITKKSLKTKLFEIQSHPTLHQMTSSV
                     QGKLKKNISLYQIFKALFPCGSITGAPKLESIKFIEELEQRDRGIYCGTIGLIHKNKN
                     KFSVAIRTLEKQDEIYTYSTGSGLVWDSKFKDEFEELKLKSAILNPCDFHLFETIYFK
                     "
BASE COUNT          343 a          122 c          108 g          259 t
ORIGIN      
        1 aatttataaa ttttttagat caagataatt acaaagaaaa tttcatcaag gttaaagagg
       61 caatctccaa aggaagagtt tatcaaatca acctcactca aaattttaaa tttcatagca
      121 aaatggattc ttttgaactt tttaaacttt tactttctag acaagatact gaatttaaag
      181 cttttataaa agatgaaaca agagaaattt tgtccttctc acctgaactt ttcttcaaga
      241 ccaaaaaaag aaaaatattt acaaaaccta tgaaaggcac aattaagcgt gataaagatc
      301 ctataaaaga tgaagaaaat aaaaccttct tgcaaaatga tacaaaaaat ctaagtgaaa
      361 atgttatgat ttgcgatctt ttacgcaacg atctttcaaa aatcatcaca aaaaaaagct
      421 taaaaaccaa actttttgaa attcaaagtc accctacttt acatcaaatg acttcaagcg
      481 tacaaggaaa acttaaaaaa aatatttctt tatatcaaat ttttaaagct ctctttcctt
      541 gtggttctat tacaggtgct ccaaagcttg aaagcattaa atttattgaa gaattagaac
      601 aaagagatcg tggtatttac tgcggaacta taggtttaat acacaaaaat aaaaataaat
      661 ttagcgtagc catacgcacc ttagaaaaac aagatgaaat ttatacttat agcacgggta
      721 gtggcttggt ttgggactca aaattcaaag atgaatttga agaattaaaa cttaaaagtg
      781 cgattttaaa tccttgtgat tttcatcttt ttgaaaccat atattttaaa aa
//
LOCUS       DAEBKH010000211          817 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.214, whole genome shotgun sequence.
ACCESSION   DAEBKH010000211 DAEBKH010000000
VERSION     DAEBKH010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.214"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..606
                     /locus_tag="KIL20_001705"
     CDS             <1..606
                     /locus_tag="KIL20_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HBD2721711.1"
                     /translation="THKLFKDFYNILNQKSSYKEYQNFTLFKLDEKIFHKKHSLFYNF
                     PLPFKNPHKEGILKLILYKDGRYEFQQSALKQNSNDILLLSDDKINSKSDNLYHKSSL
                     RTFYNQHSYKWQQNLCYDIAFFNEKDELCEGSRTNLILEKNTQFYTPQIQSGMLNGVY
                     RNFLINLGLIKEKALFKQDLFEAENIYCINSVRGLKKVKLQ"
     gene            603..>817
                     /locus_tag="KIL20_001706"
     CDS             603..>817
                     /locus_tag="KIL20_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HBD2721712.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELGFECKVIKNDAFKKAKELEK
                     FDFTHLIISPGPHSPKESKLSLKAIKY"
BASE COUNT          328 a          123 c           93 g          273 t
ORIGIN      
        1 actcacaagc tctttaaaga tttttataat attttaaatc aaaaaagttc ttataaagaa
       61 tatcaaaatt ttacactttt taaactcgat gaaaaaattt tccacaaaaa acactcttta
      121 ttttataatt ttcccctacc ctttaaaaat ccacacaaag aaggaatttt aaagcttatt
      181 ttatacaaag acggaagata cgaatttcaa caaagtgcct taaaacaaaa ttcaaacgat
      241 attctgcttt taagtgatga taaaattaac tcaaaaagtg acaatctcta tcacaaaagc
      301 tcgttgcgta ctttttataa tcaacactca tacaaatggc aacaaaactt gtgttatgac
      361 atagcttttt ttaacgaaaa agatgaactt tgcgaaggct caagaaccaa tctcatctta
      421 gaaaaaaaca ctcaatttta tactccacaa attcaaagcg gtatgttaaa tggcgtatat
      481 agaaatttct taatcaatct tggtttgata aaagaaaaag cattatttaa acaagattta
      541 tttgaagcag aaaatattta ttgtattaat tccgtgcgtg gtttaaaaaa ggtaaaattg
      601 caatgaagaa aattttattt atagataatt atgattcttt tagttatacc atcatctatt
      661 atcttaaaga acttggtttt gaatgtaaag tgataaaaaa tgatgccttt aaaaaagcta
      721 aagaattaga aaaatttgat ttcactcatc ttatcatctc tcctggccct cattctccta
      781 aggaatctaa attaagctta aaagcaatca aatattt
//
LOCUS       DAEBKH010000212          800 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.216, whole genome shotgun sequence.
ACCESSION   DAEBKH010000212 DAEBKH010000000
VERSION     DAEBKH010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 800)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.216"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..645)
                     /locus_tag="KIL20_001707"
     CDS             complement(<1..645)
                     /locus_tag="KIL20_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HBD2721713.1"
                     /translation="MMFFLNLKQINDRFNTEFITKFKEILESGWYILGKQCEKFENNF
                     AKYCGVKHCIGVANGLDALRLIIKAYDFKENDEIIAPANTYIASILAITDNKCKPILI
                     EPDINTYNINPDLIEEKITKKTKAIMVVHLYGQVCDMEKIQLLANKYNLKIIEDCAQA
                     HGAIYKDKRVGNLGDAAGFSFYPGKNLGALGDAGCICTNDDNFASKIRALANYGS"
BASE COUNT          257 a          125 c           93 g          325 t
ORIGIN      
        1 agagccatag tttgctaaag ctctaatttt ggatgcaaaa ttatcatcat tggtgcaaat
       61 acacccagca tcccctaaag cacctaaatt tttaccaggg taaaaagaaa aaccggcagc
      121 atctcccaaa tttccaactc gtttatcttt ataaatagcg ccatgtgctt gagcacaatc
      181 ttctataatt tttaaattgt atttattagc taacaactga attttttcca tatcacaaac
      241 ttgaccataa agatgaacaa ccatgatagc tttagttttt tttgtgatct tttcttctat
      301 taaatcagga tttatgttgt aagtattgat atcaggctct attagtatag gtttgcattt
      361 attatcagtt atagctaaaa ttgatgctat gtatgtattt gcaggagcta tgatttcgtc
      421 attttcttta aagtcataag cttttatgat caatcttaaa gcatcaagcc catttgcaac
      481 gcctatgcaa tgtttaaccc cacaatattt tgcaaaatta ttttcaaatt tttcacattg
      541 ctttccaagt atataccaac cactttctag aatttcttta aattttgtta taaattcagt
      601 gttaaaccta tcatttattt gttttaaatt caaaaaaaac attatttccc tttatttttt
      661 tatagtaaaa agtatatttg tttatgaatt ttatatattt acctttttcg tctttgcatt
      721 tataaaataa aaaatcaaat atactattga ttctggataa gtgattttta ttttctaata
      781 ttttgtttaa gattatgttt
//
LOCUS       DAEBKH010000213          756 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.218, whole genome shotgun sequence.
ACCESSION   DAEBKH010000213 DAEBKH010000000
VERSION     DAEBKH010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.218"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..>756
                     /locus_tag="KIL20_001708"
     CDS             <1..>756
                     /locus_tag="KIL20_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HBD2721714.1"
                     /translation="IPLSWFKNATNNANIQEFGKLNQKALIIQNTIIKNLPTQRAILK
                     NPFFENEGIPFDYASDGILNAGTPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSN
                     DRAKIYENLNFITPLKEKFPIYSEDGKFFFESRIGAIYPYYKEDKNYFYGKIGSKKYK
                     ISKKDVSKFPLQFNDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPR
                     NSAAQKNSFNHFDISTLSNSQKKDFLNRFGKAYL"
BASE COUNT          279 a          115 c          102 g          260 t
ORIGIN      
        1 attccacttt catggtttaa aaacgctaca aataacgcaa atatccaaga atttggcaaa
       61 cttaatcaaa aagctttaat tatccaaaat acaatcatta aaaatcttcc aacccaaaga
      121 gctatcttaa aaaatccttt ttttgaaaat gaaggaattc cttttgacta tgcaagcgat
      181 ggcattttaa atgctggaac ccctgtctta atttcacatt ttagtaaaga taagcgttat
      241 gcttttgttt taggtgaagc tggatttgga tttgttgaaa gtaaaaattt ggaatttttc
      301 tcaaacgata gagcgaaaat ctatgaaaat ctcaacttta tcacaccgct aaaagaaaaa
      361 tttcctatct atagcgagga tggtaaattt ttctttgaaa gtagaattgg cgctatttat
      421 ccttactaca aagaagataa aaactatttt tatggaaaaa taggctctaa aaaatataaa
      481 atttctaaaa aagatgtatc taaatttcct ttacaattca atgataaaaa tttaaaaaat
      541 caactttcac aagttttaaa tttgccttat ggctggggcg gttataattt tgaaagagat
      601 tgttctttac taactcgtga tatcttttca gcttttggac tttatctacc aagaaattca
      661 gctgcacaaa aaaattcttt taatcatttt gatataagca ctcttagcaa ttctcaaaaa
      721 aaagattttt taaaccgctt tgggaaagct tatctt
//
LOCUS       DAEBKH010000214          736 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.221, whole genome shotgun sequence.
ACCESSION   DAEBKH010000214 DAEBKH010000000
VERSION     DAEBKH010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.221"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(<1..>736)
                     /locus_tag="KIL20_001709"
     CDS             complement(<1..>736)
                     /locus_tag="KIL20_001709"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721715.1"
                     /translation="PKKLNDQAEKINYHNISGELAWKMNLPLPENYKLIWLWAACSGT
                     MAIYTFFNYSDISTINANGWEDEKKVYIDNYTYILSKKTHVAIAPRVFENNDKIYYLF
                     TSNVPLLYICRDPISIIRHAINHIGDQNSKIKPMMKQITLNSNFKELFPEILYWYSNS
                     SKPELNSLIKVLDNYELYFKSYQRIKILKKDVLCFELNEISGLNARKTFDFIADKFFN
                     VKCDYSFFSKRINRHQGDLVVLPVVYS"
BASE COUNT          260 a          101 c           84 g          291 t
ORIGIN      
        1 agaatataca actggaagca caaccaaatc accttgatgg cgattaattc ttttagaaaa
       61 aaaagaataa tcgcatttta cattaaaaaa tttatcagct ataaaatcaa atgtttttcg
      121 agcatttaaa ccagagattt cattaagttc aaaacacaat acatcttttt ttaaaatttt
      181 aattctttga tatgatttaa agtaaagttc ataattatct aaaactttta tcaaactatt
      241 caattcaggt ttgcttgaat tggaatacca gtaaagtatt tctggaaaaa gttctttaaa
      301 atttgaattt aaagttatct gtttcatcat tggttttatt ttgctatttt ggtcgcctat
      361 atgatttatt gcatgcctga taattgatat tggatctcta catatatata ataaaggaac
      421 attgctagta aataaataat aaattttatc attattttca aacactcttg gagctattgc
      481 tacatgtgtt tttttgctta atatatacgt ataattatcg atataaactt ttttttcatc
      541 ttcccaacca tttgcattaa tagttgaaat atctgaataa ttaaaaaatg tataaatagc
      601 cattgttcca ctacatgcag cccataacca tattaattta taattttcag gcaatggtaa
      661 attcattttc caagctaatt cccctgaaat attatgataa tttatttttt ctgcttgatc
      721 attaagtttt ttaggg
//
LOCUS       DAEBKH010000215          724 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.222, whole genome shotgun sequence.
ACCESSION   DAEBKH010000215 DAEBKH010000000
VERSION     DAEBKH010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.222"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..>724
                     /locus_tag="KIL20_001710"
     CDS             <1..>724
                     /locus_tag="KIL20_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3971 domain-containing protein"
                     /protein_id="HBD2721716.1"
                     /translation="PQSLNLWVAYRAKGEFYHLDYLQGFIDFTKDNYYLDNISASGYV
                     NNVKVRLDDKMNAIEIPKLDLNLNKQKLDFVFNKAFYNGADLSSSKVYLYDLFDEKKV
                     GIYLRIKSDNLKFDEKLAKALEDYHFSLPFYQKSGKIKSDLELKIDFHDKGEISYSGI
                     LALENASISLADFNITKAFVKLNQNDLNIENASVKNGFLEADFNAKFDLQKQQGNFNT
                     QISRLYFDNGELLDLKNQNVEVK"
BASE COUNT          264 a           73 c          123 g          264 t
ORIGIN      
        1 ccgcagagtt taaatctttg ggtagcatat agggctaagg gagaatttta tcatttagat
       61 tatttgcagg gctttataga ttttactaaa gataattatt atttagacaa tattagtgca
      121 tcaggttatg ttaataatgt caaagttcgc ttggatgata aaatgaatgc tattgaaatt
      181 ccaaaactcg atttaaattt aaacaaacaa aagctcgatt ttgtctttaa taaagctttc
      241 tataatggtg ctgatttaag ttctagtaag gtttatctat atgatttgtt tgatgaaaaa
      301 aaagttggga tttatttgcg cattaagtct gataatctaa aatttgacga aaaacttgct
      361 aaagctttag aggattatca tttttcacta cctttttatc aaaaaagcgg aaaaattaaa
      421 agtgatttgg agcttaaaat tgattttcat gataagggtg aaatttctta tagtggtatt
      481 ttagctttag agaatgctag tatttctttg gctgatttta atattacaaa agcatttgta
      541 aaattaaatc aaaatgattt aaatatagaa aatgccagtg ttaaaaatgg ctttttagaa
      601 gctgatttta atgctaaatt tgacttacaa aaacagcaag gaaatttcaa tactcagatt
      661 tcaaggcttt attttgacaa tggggagctt ttagatttaa aaaatcaaaa tgtagaagta
      721 aaat
//
LOCUS       DAEBKH010000216          719 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.223, whole genome shotgun sequence.
ACCESSION   DAEBKH010000216 DAEBKH010000000
VERSION     DAEBKH010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.223"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            114..719
                     /locus_tag="KIL20_001711"
                     /pseudo
     CDS             114..719
                     /locus_tag="KIL20_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343599.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
BASE COUNT          279 a           55 c          134 g          251 t
ORIGIN      
        1 tatctgatat tgaaatagaa ggatatataa ggttgaaaat tgatagcggt gataatatta
       61 taaataatta taagattatt ttagattatt tttattataa atatatcaat ttttcttttg
      121 tatttgttat agatgaaatc aatcgtggta atgtaagtaa gatttttggt gagcttataa
      181 ccttgataga gcctagtaaa aggataggtg aaaaagaaga gttaaaagta aaattgcctt
      241 atagtggtga agaatttggg gtgcctaaaa atgtttatat cataggcact atgaatacag
      301 ccgatagaag cataacttct cttgatacag ctttgcgaag aagatttgaa tttattgaga
      361 tgatgcctga tgtgagcaaa ttatctatgg attgcgaagg tattaattta caagaattat
      421 taaaagctat aaacactcgt atagaatatt tactagatag agaaaaaacc ataggacacg
      481 cattttttat aagtgttgaa aatttagaaa gtttaaaaaa ggtttttaaa aatagaatca
      541 tcccactttt gcaagagtat ttttacaatg actatgcttt gattgatgcg gttttaaata
      601 aaaatggtat gttggaaatt agtgttgaaa ataaagatta tttaaaaaat atgacagaat
      661 ttatagaaag tgataaggtt gtttataaat ttagtgatag taataattgg agtaaagat
//
LOCUS       DAEBKH010000217          713 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.224, whole genome shotgun sequence.
ACCESSION   DAEBKH010000217 DAEBKH010000000
VERSION     DAEBKH010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.224"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..>713
                     /locus_tag="KIL20_001712"
     CDS             <1..>713
                     /locus_tag="KIL20_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HBD2721717.1"
                     /translation="NERFYLDGKIANDEELEQAHIRLEEIFKQDLQKLSYFEYATFLA
                     MILFQKCDFIVLEAGVGGEYDATSVFERRMNIFTRIGFDHIQILGNSLEDIARTKLKV
                     MAPVALISDEQEQNVLNLAKKIAFLKKANLQVSSLNPFLKEKFEIYCKKFVLPCFLKH
                     NLKLALKACEILTSQEKTLEALKKLQGLNLQGRCQEISPNFFVDVGHNPMAAKAMLDK
                     FQGEKINLIYNAYLDKDIF"
BASE COUNT          258 a           77 c          124 g          254 t
ORIGIN      
        1 aatgaaagat tttatcttga tggtaagatt gcgaatgatg aagaattaga acaagctcat
       61 ataagacttg aagaaatttt taaacaagac ttgcaaaaat taagttattt cgaatatgct
      121 acttttttag ctatgatttt atttcaaaaa tgcgatttca ttgttttaga agcaggagtg
      181 ggtggagaat atgatgctac ttctgttttt gaaagaagaa tgaatatttt tacaagaatt
      241 ggatttgacc atattcaaat tttgggcaat tctttagaag atattgcaag aaccaagctt
      301 aaagttatgg cgcctgtagc acttataagt gatgagcaag agcaaaatgt tttaaattta
      361 gcaaaaaaaa ttgctttttt aaaaaaagct aatttgcaag tttcttcctt aaatcctttt
      421 ttgaaagaaa aatttgagat ttattgtaaa aagtttgttt taccttgttt tttaaagcat
      481 aatttaaagc ttgcattaaa ggcttgtgaa attttaactt cgcaagaaaa aaccttagaa
      541 gctttaaaaa agttacaagg gttaaattta caaggaagat gccaagaaat ttctccaaat
      601 ttttttgttg atgtgggtca taatcccatg gctgctaagg ctatgcttga taaatttcaa
      661 ggagagaaaa taaatcttat ttataatgct tatttggata aggatatttt tca
//
LOCUS       DAEBKH010000218          713 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.225, whole genome shotgun sequence.
ACCESSION   DAEBKH010000218 DAEBKH010000000
VERSION     DAEBKH010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.225"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..541
                     /locus_tag="KIL20_001713"
     CDS             <1..541
                     /locus_tag="KIL20_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721718.1"
                     /translation="LSFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAWSVLKELDK
                     MDENFNKYKVNYSLALFSIVNYRFIMEKYGMGSLNEIFVRFKKILKDSCSEFDELWMI
                     DEKSYLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKIHVAYLDKQSKPSIN
                     ILDELIKQIAAVNEQHNES"
     gene            507..>713
                     /locus_tag="KIL20_001714"
     CDS             507..>713
                     /locus_tag="KIL20_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HBD2721719.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENL"
BASE COUNT          288 a           68 c          118 g          239 t
ORIGIN      
        1 acttagtttt gaggatttaa aactaaaatt taaacaactt ggagaaaaaa ttacatcttt
       61 aaataatcaa attgaattca cgcaaagctt ggaggagaga gaggcttgga gtgttcttaa
      121 agagcttgat aaaatggatg aaaattttaa taagtataaa gttaattatt ctttagcttt
      181 attttctata gtaaattacc gtttcattat ggaaaaatac ggcatgggaa gtttgaatga
      241 aatttttgtt cgatttaaaa aaattttaaa agattcttgt agcgaatttg atgaactgtg
      301 gatgatagat gaaaagagtt atttgattgt ttcgccagga aaaagcaaag atgaaattac
      361 acagcttgta aatacaaatc ttaaaactat agaaaatttt agatttattt ataagcaaga
      421 tattataact cctaaaattc acgtggctta tcttgataag caaagtaagc caagtattaa
      481 tattttagat gagttaataa agcaaattgc agcggttaat gaacaacata atgaaagttg
      541 agaatttttt agctcaaaaa agtataaatt acgataaaat tgatcgtttt ttgatgttta
      601 gaatgtatga aaaatataag aaatatttta aaaatattcc tataattcaa cttataggca
      661 caaatggtaa aggtagcacg ggtagatatt taacccaact tttagaaaat tta
//
LOCUS       DAEBKH010000219          696 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.226, whole genome shotgun sequence.
ACCESSION   DAEBKH010000219 DAEBKH010000000
VERSION     DAEBKH010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.226"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            39..696
                     /locus_tag="KIL20_001715"
                     /pseudo
     CDS             39..696
                     /locus_tag="KIL20_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870498.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          297 a           75 c           95 g          229 t
ORIGIN      
        1 tatattatcc gtattattta aaaaaatatt tagcgaagat tgcatgcttg tttataccaa
       61 ataaaaatat aagggcaata attagagaaa aattactcaa tcaatttatg caaataaaac
      121 ttgataattt aaattcgtat attccaaaag atatagtaga taatatagaa aaatatgata
      181 atgaacattt ttataaaata aatcacatta taaaatctaa acacaaagga ttttttgatt
      241 ttgacgaaaa atctaaaaat ccaacatcac ctttaaatcc atgggcttat ataagagtaa
      301 aaaatgaagc attaactttg aaagcttcgt taaaaagtat acttccggct atacaaagag
      361 ggattatagg atataatgat tgcaatgatg gaagcgaaga gataatctta gaattttgca
      421 aacagtatcc ttcttttata ccagtaaaat atccttatga agtacaaatt gaaaatccac
      481 aaagtgaaga aaataaactt tatagttatt ataattatgt tgcaagcttt attccacaag
      541 gagaatggct tataaaaata gatgttgatc atatgtatga tgctaaaaga ttatacaaaa
      601 gtttttatat acctaaaaaa aagactatga tatactttgt tattctcgaa tagattttta
      661 ttataaagat gatgatagag ctgaggtatt tatagt
//
LOCUS       DAEBKH010000220          660 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.227, whole genome shotgun sequence.
ACCESSION   DAEBKH010000220 DAEBKH010000000
VERSION     DAEBKH010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.227"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..609
                     /locus_tag="KIL20_001716"
     CDS             <1..609
                     /locus_tag="KIL20_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HBD2721720.1"
                     /translation="SIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDDENFKAY
                     YLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTILTYAPK
                     AIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRARALYIQ
                     ALTYERMQNVQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ"
BASE COUNT          254 a           85 c           88 g          233 t
ORIGIN      
        1 tctatatttt atggtcttca aaaagcatct attctttttg acaataaaca atatcctcag
       61 gtgattaaaa tttctaaaga catagctaat tctagaattt taaaaagtga tgatgagaat
      121 tttaaggctt attatttgca atttttatct ttattgcgct taaatgacta caatcaagcc
      181 attaaaattt tgcaaatttt agaaagtttt ccaatgaatt ttagtatggt agaagcctac
      241 gatgctttac tttcttacgc taatgatcat aatatgcaaa caactatttt aacttacgca
      301 cctaaggcca ttgactatca aaattttaaa ggtataaatc tttttagtcc taatttagaa
      361 tttatatatc ttgatgcttt gactaaaatc aataaaaatg aagaaagttt agctgtttta
      421 acagatttac ttaaattaaa actttcagat gaagatagag caagagcttt atatatccaa
      481 gccttaactt atgaaagaat gcaaaatgta caagctgaaa aagaaagttt aaaacaatgt
      541 cttgaaatca aaagtgcttc aaattggcag aatttatgta agagtaaaaa tcaaatttta
      601 aatcaataag taaatttaga gataactagc tttttggcta gttatctaag gttaaaacct
//
LOCUS       DAEBKH010000221          657 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.228, whole genome shotgun sequence.
ACCESSION   DAEBKH010000221 DAEBKH010000000
VERSION     DAEBKH010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.228"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            43..267
                     /locus_tag="KIL20_001717"
     CDS             43..267
                     /locus_tag="KIL20_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HBD2721721.1"
                     /translation="MMKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFSKDELSQLKSQNELLKAIKEKLC"
     gene            261..>657
                     /locus_tag="KIL20_001718"
     CDS             261..>657
                     /locus_tag="KIL20_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HBD2721722.1"
                     /translation="MLKNTKKLFKLIEEKNALHKKCLDGLQLSDEEYNDLEKLIIYYK
                     DTLNINLEEQAKSYIVVLNDTLEETKYFIEFGKYRYSTLAEVKNMVYFNENYMKQYMV
                     GLAISSFIWNAHIEVRRYFAKYIDKKQDRK"
BASE COUNT          296 a           69 c           94 g          198 t
ORIGIN      
        1 agccttgacc aatgataaat tagccatata taagaaagat cgataatgaa acaattttat
       61 gaaattttag aaaatatact tgaaaccaaa gtagatgaaa atacaaattt aagcatggaa
      121 aactgcaaga actggacttc tttagctcat attgatatca tcatgagttt agaagaagaa
      181 tttgaaatca aatttagcaa agatgaatta agtcagctaa aatctcaaaa tgaactttta
      241 aaagctatta aggagaaatt atgttaaaaa atactaaaaa actatttaaa ctcatagaag
      301 aaaaaaatgc tttgcataaa aaatgtttag atggattgca actttcagat gaagaatata
      361 atgatttaga aaaacttatc atctattata aagatacatt aaacatcaat ctagaagaac
      421 aagctaaaag ttatatagtt gtactcaatg acactctaga agaaactaaa tattttatag
      481 aatttggaaa atatagatat agcactttag cagaagtaaa aaatatggta tatttcaatg
      541 aaaattatat gaagcaatac atggtgggac ttgctatatc ttcttttatt tggaatgctc
      601 atattgaagt tagaagatat tttgctaaat atatagataa aaaacaagat cgaaaaa
//
LOCUS       DAEBKH010000222          645 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.231, whole genome shotgun sequence.
ACCESSION   DAEBKH010000222 DAEBKH010000000
VERSION     DAEBKH010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.231"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            complement(21..>645)
                     /locus_tag="KIL20_001719"
     CDS             complement(21..>645)
                     /locus_tag="KIL20_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HBD2721723.1"
                     /translation="ENLGTFASRNLGVLHSSSDFIMFLDSDDFLTLDACEIALKEMKK
                     GFDLLCFDAFVHRVKTKQFYRFKQDEFFNQKEFLEFLSKQRHFCWSVWAKCFRKDMIL
                     KIFEKVKIDERLSYGEDVLFCYIYFMFCEKIAVFKTCIYHYEFNPNGRYENKNKEILN
                     QNYKDKKKSNEIIKRLSKEFLLDEFHQKLFEVLEREEKSLCMRANKI"
BASE COUNT          238 a          117 c           52 g          238 t
ORIGIN      
        1 aatcataaag tattataaag ctaaatctta tttgctctca tacataaact cttttcctct
       61 ctctccaaaa cttcaaataa tttctgatga aattcatcaa gtaaaaactc tttggagagt
      121 ctttttatga tttcattact tttcttttta tctttataat tttgatttaa aatttcttta
      181 tttttattct catatcttcc atttggatta aattcataat gataaatgca agttttaaaa
      241 acagctattt tctcacaaaa cataaaataa atataacaaa aaagcacatc ttcgccgtaa
      301 ctcaaacgct catcgatttt aactttttca aaaattttta agatcatatc ttttctaaaa
      361 cacttcgccc aaaccgacca gcaaaaatgc ctttgtttgc ttaagaattc taaaaattct
      421 ttttgattaa aaaactcatc ttgtttaaaa cgataaaatt gcttggtttt taccctatgt
      481 acaaaagcat caaagcaaag taaatcaaaa ccttttttca tctctttaag tgctatttca
      541 caagcatcaa gtgttaaaaa atcatcacta tctaaaaaca ttataaaatc agaactagaa
      601 tgcaaaactc ccaaatttct acttgcaaaa gtgcctaaat tttct
//
LOCUS       DAEBKH010000223          637 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.232, whole genome shotgun sequence.
ACCESSION   DAEBKH010000223 DAEBKH010000000
VERSION     DAEBKH010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 637)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.232"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..>637
                     /locus_tag="KIL20_001720"
     CDS             <1..>637
                     /locus_tag="KIL20_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD2721724.1"
                     /translation="DGEYFTADDNGNLKIFDNSYNEIYNFQFDASVVGVASNGDDLAL
                     VLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANPIFLDNIIVYPTLDGKILILSRNN
                     LQVIKDVVISAENFFNNVIHLSVIGDKLIAATAKKIIVVSPARTLYLDADIKDVALSD
                     DGIFILEKDGTIIKTDYNLRKIAEKKFEFAIFVKSNIYNNYLYIFEKTGYLI"
BASE COUNT          231 a           93 c           95 g          218 t
ORIGIN      
        1 agatggagaa tattttaccg cagatgacaa tgggaattta aaaatttttg acaattctta
       61 taatgaaatt tataattttc aatttgacgc tagtgttgta ggagtagctt ctaatggaga
      121 tgatttagcc cttgtacttg caaataatac tatagttctt gcaaatcgtt ctttgggtat
      181 taaattcagt caaaccctaa cctcagctcc agctcaagac agtcgtaccg ctaatcctat
      241 atttttagac aatatcatcg tatatccaac gctagatggc aaaattttaa ttctttcaag
      301 aaacaatctt caagtcatta aagatgtggt tatttcagca gaaaattttt tcaacaatgt
      361 aatccatcta agtgtaattg gagataaact tatagcagca acagctaaaa aaatcattgt
      421 tgtaagccct gctagaactc tttatcttga cgctgacata aaagatgttg cacttagtga
      481 tgatggtatt tttatactag aaaaagatgg cactattatt aaaactgatt ataacttaag
      541 aaaaattgca gaaaaaaaat ttgaatttgc tatttttgta aaaagcaata tatacaataa
      601 ttatttatat atttttgaaa aaacaggcta tcttatc
//
LOCUS       DAEBKH010000224          625 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.233, whole genome shotgun sequence.
ACCESSION   DAEBKH010000224 DAEBKH010000000
VERSION     DAEBKH010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.233"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..>625
                     /locus_tag="KIL20_001721"
     CDS             <1..>625
                     /locus_tag="KIL20_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HBD2721725.1"
                     /translation="TPCFNHEKYVSYFLQSVLEQSFSDFELIIVDDCSSDNSTKEIQK
                     FKDPKIKLIKHEFNKGINATLNTAFENSNGEYIVFCASDDILEKNALEIIYKTFKDND
                     IIAVYPNLICIDENNEILGNLYPLKQRNKVELLYYLFMRYNCLTSVGLSLKRDVFEKL
                     YPLPNSMCNYQDMKMHIDILNIGEIKILETQLIRYRRTRDKTNISAHN"
BASE COUNT          271 a           64 c           86 g          204 t
ORIGIN      
        1 accccatgtt ttaatcatga aaaatatgtg agttattttt tacaaagtgt tttagagcaa
       61 agttttagtg attttgagct cattatagta gatgattgtt caagtgataa tagcacaaaa
      121 gaaattcaaa aatttaaaga tccaaaaata aaacttataa aacatgaatt taacaaaggt
      181 ataaatgcga cattaaatac agcttttgaa aactcaaatg gagaatacat agtattttgc
      241 gcaagtgatg atatattaga aaaaaatgct ttagaaatta tctataaaac atttaaagat
      301 aatgatatta tagctgtata tccaaatttg atttgtatag atgaaaataa tgaaatttta
      361 gggaacttat atccattaaa acaaagaaat aaggtagaat tattatatta tttatttatg
      421 cgatacaact gcttaacatc agttggatta tctttaaaaa gagatgtttt tgaaaaatta
      481 tatcctttac caaattcaat gtgcaactat caagatatga agatgcatat tgatatatta
      541 aatattggcg aaattaaaat acttgaaaca caacttataa gatacagaag aactagagac
      601 aaaacaaata taagtgctca taata
//
LOCUS       DAEBKH010000225          529 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.237, whole genome shotgun sequence.
ACCESSION   DAEBKH010000225 DAEBKH010000000
VERSION     DAEBKH010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.237"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            <1..>529
                     /locus_tag="KIL20_001722"
     CDS             <1..>529
                     /locus_tag="KIL20_001722"
                     /inference="COORDINATES: protein motif:HMM:NF019310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD2721726.1"
                     /translation="DLALNTQQATLITSMIVVAKIFGASFTAFLVYKFGLKKGYFLGC
                     ILMSSGIFLSFVDSYSGILVIRFLTGLGSACALVCLVPIAQQWFEKKALHFVISFNIT
                     SNLVGITLGLILAESISNYFGNWRDSLSFYAWINLILLILWLFVGKDENKKEEKKNNA
                     KDLIYALKSRVTWGM"
BASE COUNT          158 a           54 c          101 g          216 t
ORIGIN      
        1 atgatcttgc cctaaatact cagcaagcta ctttaatcac tagcatgata gtagttgcga
       61 aaatttttgg tgcttcattt actgcttttt tggtttataa attcggatta aaaaagggat
      121 attttttagg ctgtatttta atgagttcgg gtatcttttt aagttttgta gatagttata
      181 gtggtatttt ggttataaga tttttaacag ggcttggttc agcttgtgct ttagtttgct
      241 tagtgcctat tgcacagcaa tggtttgaaa aaaaagcttt gcattttgta attagtttta
      301 atataacttc aaatttagta ggcattactc taggacttat tttagctgaa agtatctcaa
      361 attattttgg aaattggaga gattctttat cattttatgc ttggattaat ttgattttat
      421 tgattttgtg gctttttgta ggtaaagatg agaataaaaa agaagaaaaa aagaataatg
      481 caaaagatct tatttatgct ctaaaatctc gtgttacttg gggtatgat
//
LOCUS       DAEBKH010000226          495 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.denovo.239, whole genome shotgun sequence.
ACCESSION   DAEBKH010000226 DAEBKH010000000
VERSION     DAEBKH010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.denovo.239"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            10..405
                     /gene="perR"
                     /locus_tag="KIL20_001723"
     CDS             10..405
                     /gene="perR"
                     /locus_tag="KIL20_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HBD2721727.1"
                     /translation="MLKKHELKATPQRLCVLKILKRHEHPNIDELYTEIKKEYPSISL
                     ATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCAKCGGIEDLSFKDAKLYE
                     YQEHLEKKIGNLVNHLSVCAYVDSCKKCH"
BASE COUNT          191 a           60 c           76 g          168 t
ORIGIN      
        1 ttactacaaa tgcttaaaaa acatgagtta aaagctactc cgcaaagact atgtgtttta
       61 aaaattttaa aaagacatga gcatcctaat attgatgaat tatatacaga aattaaaaaa
      121 gaataccctt caatctcttt agcgacggtt tataaaaatc ttaatacttt acaagaacaa
      181 ggtttagttg ttgaaatcaa tgttttaaat caaaaaactt gttacgatat ttatgaagaa
      241 gaacatattc atgttgtttg cgccaaatgt ggtggtatag aggatttaag ttttaaagat
      301 gctaagcttt atgaatatca agagcattta gaaaaaaaga taggcaatct cgtcaatcat
      361 ctgtctgttt gtgcttatgt tgatagttgc aaaaagtgtc attaagcaaa ataaggttaa
      421 aataacccat atattttaag ggttatttta atggtttatg aaattcaaaa aaacttttta
      481 ctatctgatt gcact
//
LOCUS       DAEBKH010000227         3755 bp    DNA     linear   BCT 13-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate Cj_Farm3_2014-02_C1
            SAMEA4964262-rid12087373.guided.133, whole genome shotgun sequence.
ACCESSION   DAEBKH010000227 DAEBKH010000000
VERSION     DAEBKH010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4964262
            Sequence Read Archive: ERR2834481
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001024640.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001024640.1
            Genome Coverage       :: 61x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/12/2021 23:47:20
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,729
            CDSs (total)                      :: 1,685
            Genes (coding)                    :: 1,656
            CDSs (with protein)               :: 1,656
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 22 of 29
            Pseudo Genes (incomplete)         :: 8 of 29
            Pseudo Genes (internal stop)      :: 2 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3755
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4964262-rid12087373.guided.133"
                     /isolate="Cj_Farm3_2014-02_C1"
                     /isolation_source="cattle feces, cows"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2014-02"
     gene            42..815
                     /locus_tag="KIL20_001724"
     CDS             42..815
                     /locus_tag="KIL20_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HBD2721728.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
     gene            complement(900..1784)
                     /locus_tag="KIL20_001725"
     CDS             complement(900..1784)
                     /locus_tag="KIL20_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HBD2721729.1"
                     /translation="MIRIDINHPINTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNVKENIA
                     YATSSKAKVSELLALMGLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELAKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSSISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDIKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(1781..2455)
                     /gene="modB"
                     /locus_tag="KIL20_001726"
     CDS             complement(1781..2455)
                     /gene="modB"
                     /locus_tag="KIL20_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HBD2721730.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKGKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYNLAHQYAFILFIFSFLVLFSLYFVN
                     KKMSFQ"
     gene            complement(2448..2849)
                     /locus_tag="KIL20_001727"
     CDS             complement(2448..2849)
                     /locus_tag="KIL20_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HBD2721731.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSILMLELKYLENLKI
                     GASVELLFKEHELCFSTSKTLLSVENSFLAKITKIKKGELLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(2846..3595)
                     /gene="modA"
                     /locus_tag="KIL20_001728"
     CDS             complement(2846..3595)
                     /gene="modA"
                     /locus_tag="KIL20_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HBD2721732.1"
                     /translation="MKKFIVFFGILFFVSCLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGIENLKEKAGKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAIIIDTKYFSPLEQSYVITKY
                     AKDKKLAFEFSEFIGSSKAKEIFKKYGFSTP"
     gene            complement(3646..>3755)
                     /locus_tag="KIL20_001729"
     CDS             complement(3646..>3755)
                     /locus_tag="KIL20_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="malonyl-[acyl-carrier protein]
                     O-methyltransferase BioC"
                     /protein_id="HBD2721733.1"
                     /translation="GFYPLNKGFLKEFEEKFQNKLTYHPVFILCKNDIK"
BASE COUNT         1403 a          568 c          495 g         1289 t
ORIGIN      
        1 aaagtatttt gtttaaaatt atttaaatag aaagatattt tatgaaaaaa ataactttat
       61 ttttactttt cttaaattta gtgtttgggc aagataagat attaaataat tggtttaaag
      121 agtataatac aagcggcact tttgtttttt atgatggaaa aacttgggcg agtaacgact
      181 tttcaagggc tatggagact ttctctcccg cttccacttt taaaattttt aatgctctaa
      241 ttgcacttga tagtggtgtg ataaaaacta aaaaagaaat tttttatcac tatagaggtg
      301 aaaaagtatt tttatcttct tgggcgcaag atatgaattt aagttcagct ataaaatatt
      361 ctaatgttct tgcttttaaa gaagtggcaa gaagaattgg tatcaaaact atgcaagaat
      421 atttaaacaa gcttcattat ggtaatgcta aaatttccaa gatcgatact ttttggcttg
      481 acaactcact aaaaataagc gctaaagaac aagcaatttt gctttttaga ctttcacaaa
      541 atagcttacc tttttctcaa gaagcaatga atagtgttaa ggaaatgatt tatttaaaaa
      601 atatggaaaa tttagagctt tttggaaaaa caggttttaa tgatgagcaa aaaattgctt
      661 ggattgtagg ttttgtgtat ttaaaagatg aaaataaata taaggctttc gcgctaaatt
      721 tagatattga taaatttgaa gatttatata aaagagaaaa aattttagaa aaatatttag
      781 atgaacttgt aaaaaaagtt aaaaatgatg gctagtgagt atttcgtaaa atgcaaaaat
      841 acttaattgt atgatttgcg tacacttaaa gtactcatta aaaaattaaa tttttgctct
      901 tatttatcaa gttttcctac gatgataggg ttaaaggctt ttatggatag caaaagcgta
      961 tcgccgattt ttatatcttg ataagctttt agaaattcct cttcactaag agtgatttta
     1021 ataatatctt gatttaaaag caaggttaaa accactaaaa tatcactttt tttaatttct
     1081 agcaaagttg cactcaaacg caattttgca ctaatacttg aatgagtaaa aaattcattt
     1141 ttaggaaaat ccttaatgat ttttccattt ttaagctcta aaattctatg acttaactta
     1201 taaatttcag ccaaatcatg actgactaat aaagtactta tcttaaaata ctctaaaatt
     1261 ttagccaatt catcttgtaa attggcgcgc attttaaaat ccaaagcgct taaaggctca
     1321 tctaaaagca aaatttttgg ttcccttgct aaagctcttg ctagggctac cctttgtgct
     1381 tgtcctccgc ttaaatgttt aggataaatt ttagccaaat tttcaagtcc cattaaggct
     1441 aaaagctcgc taacctttgc cttagaacta gtggcatagg caatattttc ttttacattc
     1501 atatttggaa aaagcgcata atcttgaaaa acaaaaccaa tttttctttt ttgtaaagct
     1561 aagctaaaat tttttgaaga atcaaaccaa agttcattat ctacttctat acgccccaat
     1621 ttaggcttta taagtcctgc tatgattttt aaaagagtgg tttttcctgc tccactttcg
     1681 ccaaaaagtg cagtaatttt tcctgattct atatcttttt taaaatttaa atccagtctt
     1741 cctttagcag tatttatagg atgattgata tcaattctta tcattgaaaa ctcatttttt
     1801 tattgacaaa ataaagacta aaaagcacta aaaaagaaaa aataaacaat ataaaagcat
     1861 attgatgggc taagttatag tttaagattt caagttcatc gtaaatagct atactagcta
     1921 ctaaagtttc accttgttta tgtcctccta tcatcatcac gactccaaat tcacccacag
     1981 tatgagcaaa actcatcgca caagcactaa aaattcctgc tttagaatta ggtaaaatca
     2041 ctctaaaaag agtataaatt ttacctttac ctaaactata agaagcatcg agcaaatttg
     2101 gattgatcga tgaaaaggca ctttgcaaag gatttaccat aaaaggcaaa gaaaaaatca
     2161 aagaagcaaa aacaagacct tcaaaactaa aaaccaaaga aagattaaaa tattctttta
     2221 aaacttgccc taaaaaacta ttagccgaaa aagttacaag caaataaaat cccaaaacgc
     2281 taggaggtaa aatcaaaggc aaagaaataa agctttgaag gattgtttta aaaggaaaac
     2341 gcacaaaact taacaaataa gctaaaaata caccaataaa aaaaagaata aaagtcgtga
     2401 taaaagcaag tttaaaagta agataaagag tttgtaaaaa agctggatca agcactatga
     2461 ctccttaata caatatcatt tgcttttaca aaacaaagcc attcttgatt ttcacaaatt
     2521 tcaagttcta aagctttttc tttggtgata atactagaaa gttcgttacc tttaaaatca
     2581 aaaaatacct gatacaaaag ttcgcctttt ttaatttttg taattttagc taaaaaagaa
     2641 ttttcaacac ttaaaagagt tttacttgta ctaaagcaaa gctcatgctc tttaaaaaga
     2701 agttctacac tcgcaccaat ttttaaattt tctaagtatt ttaattcaag cattaaaata
     2761 ctaaaaatca cttctttgga aagtatttta acaataacta tatcctcttg atttaaaagc
     2821 tcgcaaattt gtccttttat aaggttcatg gtgtgctaaa tccgtatttt ttaaaaattt
     2881 cttttgcttt tgaagagcca ataaattcgc taaattcaaa ggctaatttt ttatccttag
     2941 cgtattttgt gataacataa ctttgctcta aagggctaaa atactttgta tcaattataa
     3001 tagccttacc cttaggatga ttgatagaag aaactaaaga ataagccact atagctatat
     3061 ctgaattttt gctatctaca tgtaaaacag gcactgagat attttcgcct aaaacgattt
     3121 tatccttaag aagctcattt aaacccaaat tttcaagcac ttctttagct gctactccat
     3181 aaggagctac tttaggattg gctatgctta gatgcgtgat tttacctgcc ttttctttta
     3241 aattttcaat gcctccttgg agtaaatttt catccaaact atacaaagcc aaaactccta
     3301 aaacataaac ttttggcttt attaaagcat ttttatcatc ataaatagcc ttagcatatt
     3361 tagtatccgc tgaaaaaaag agatcaaatt ctcttccttg ttttaaaagc tcataatatt
     3421 ttccagaagc accaaaaacc aattctattt tatcttctgg atgtgttttc aaaaactcat
     3481 ctttaacttc actcatcgcc tttgaagctg aagaagctac aaaaatgctt aaattttgtg
     3541 catttaaaca cgaaacaaaa aacaaaatcc caaaaaatac tataaacttt ttcatttagt
     3601 tttccttgtg taaaaattta atttttggat tataacacaa aaaattcatt ttatatcatt
     3661 tttgcataaa ataaatacag gatgataagt gagtttgttt tgaaattttt cttcaaattc
     3721 ttttaaaaaa cctttattta aaggataaaa accta
//
