LOCUS       DAEDTT010000001        47532 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.001, whole genome shotgun sequence.
ACCESSION   DAEDTT010000001 DAEDTT010000000
VERSION     DAEDTT010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 47532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 47532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..47532
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.001"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..201
                     /locus_tag="KLC54_000001"
     CDS             <1..201
                     /locus_tag="KLC54_000001"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176430.1"
                     /translation="LLNTPCRGIVDTNFESKRINITSTLKFQEKKEKVEAKAEKEEAN
                     KDNSDSTNTDTNKKDKLLDISA"
     gene            551..2641
                     /locus_tag="KLC54_000002"
     CDS             551..2641
                     /locus_tag="KLC54_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HBD9176431.1"
                     /translation="MKIFKIIFLIISIFLSSSAFARVDDYINEANLIKDMLKQSIETY
                     KKGDNLGAKKLSEDAYFQHFENMEGPIGRNIGRKAITMERKFVNLRRMYKDEAPLTQI
                     NALIDSLYYDLDEVAPILQNGYRLKAEASDTNYDKAKAEKSSLEANAKREADAEALIA
                     QMMGVDKKDLAQSSLTTQASTPANNDTSKLTDDNASADLQAAAAMDARLQFILDNIST
                     KFSQAANAFKEKNYQASKDFLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLI
                     RQINDAKIDEKGLRDGLDNIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSN
                     DIKLALDEILKNYDGFSASIVDDLQGIYLDIFEASGMENKIGAVDSGLKLKIESLFSK
                     GVALIKASADKKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALII
                     VVAIVSYLVQSGNKNRLNIAYSALFTGVILSFVTAFGVSWLFKENAGQSRELIEGITM
                     LIAVLLLFYVGFWLLSNAQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAET
                     VLFYQALLFDAKTSTDFSAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYII
                     FYMVFVFTGKGIAELIEGKVIIPSLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIG
                     ILITKQISKKGVKS"
     gene            2638..3177
                     /locus_tag="KLC54_000003"
     CDS             2638..3177
                     /locus_tag="KLC54_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HBD9176432.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            3259..4662
                     /locus_tag="KLC54_000004"
     CDS             3259..4662
                     /locus_tag="KLC54_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HBD9176433.1"
                     /translation="MSIYFVHFLISVLPLSILMAFITPDKKYIFKSFLVVFLGFLFGY
                     FAFFIAAQFLKTENLIFNFDFVFIGLLLVSFIFYFWKKIEILNFILLGILSFCTALHY
                     YFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIFFFLKWQKNFNQKTSFMLFLLL
                     ILIESDKALANILLTLMRNSIIETHTFLVSFVGKSNYFGVFGIYVYLIFITFLAFLSL
                     KIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFISCVISFCIILYFFMVSSKPLTI
                     DEPKEILPNKNGKFIFDIALLRDNKLHRFAYISAEGKVIRFFLINKREDRDSPVAVFD
                     ACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGCNPIPLKYEYDGKKITIDVKDV
                     IAGSNYFSQIKEIEVQDPVSKTKIINTQAPFSYSYKGITYYFSNQNNYEEFKKDPTKY
                     VEENEAQFLIQRRNDVG"
     gene            4649..5941
                     /locus_tag="KLC54_000005"
     CDS             4649..5941
                     /locus_tag="KLC54_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD9176434.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIELTGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALFGFIFGTALSQIISLSIFGYFIDIA
                     FIALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            5931..7049
                     /locus_tag="KLC54_000006"
     CDS             5931..7049
                     /locus_tag="KLC54_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HBD9176435.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDTKLSKELKAYGANVMISPKQDENFISNAEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKTGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAISNEFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            7046..7699
                     /locus_tag="KLC54_000007"
     CDS             7046..7699
                     /locus_tag="KLC54_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9176436.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            7696..8184
                     /locus_tag="KLC54_000008"
     CDS             7696..8184
                     /locus_tag="KLC54_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HBD9176437.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLIS
                     LL"
     gene            8145..8648
                     /gene="traF"
                     /locus_tag="KLC54_000009"
     CDS             8145..8648
                     /gene="traF"
                     /locus_tag="KLC54_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HBD9176438.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFALVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(8658..9095)
                     /locus_tag="KLC54_000010"
     CDS             complement(8658..9095)
                     /locus_tag="KLC54_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HBD9176439.1"
                     /translation="MKKTILTILFLLTLTQAKEIQVYESPTCGCCDLWADYMKAKGYE
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIVWLLENKPKDVIGI
                     SAPGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
     gene            complement(9375..9818)
                     /locus_tag="KLC54_000011"
     CDS             complement(9375..9818)
                     /locus_tag="KLC54_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176440.1"
                     /translation="MKKLGLALAALVALNVSAFAGVITIHDSNLVKVSGGDDTYAKIA
                     LDNAKEGMKNQFNTDNLEIYAIESIKKDDPEHYNVIQRGSFKVMKQEIAKGKTVYYNE
                     FLVVDRKTNWAAEWDIECDHLDRPIKLSNNVNCRSGISTRRYNFK"
     gene            complement(9993..10077)
                     /locus_tag="KLC54_000012"
     tRNA            complement(9993..10077)
                     /locus_tag="KLC54_000012"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10041..10043),aa:Leu,seq:tag)
     gene            complement(10083..10159)
                     /locus_tag="KLC54_000013"
     tRNA            complement(10083..10159)
                     /locus_tag="KLC54_000013"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10123..10125),aa:Arg,seq:tct)
     gene            complement(10174..10250)
                     /locus_tag="KLC54_000014"
     tRNA            complement(10174..10250)
                     /locus_tag="KLC54_000014"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10214..10216),aa:Arg,seq:tcg)
     gene            complement(10255..10331)
                     /locus_tag="KLC54_000015"
     tRNA            complement(10255..10331)
                     /locus_tag="KLC54_000015"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10295..10297),aa:His,seq:gtg)
     gene            complement(10356..10433)
                     /locus_tag="KLC54_000016"
     tRNA            complement(10356..10433)
                     /locus_tag="KLC54_000016"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10396..10398),aa:Pro,seq:tgg)
     gene            complement(10476..11324)
                     /locus_tag="KLC54_000017"
     CDS             complement(10476..11324)
                     /locus_tag="KLC54_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HBD9176441.1"
                     /translation="MRFIFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIIPQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNAMKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            complement(11324..11986)
                     /gene="cgpA"
                     /locus_tag="KLC54_000018"
     CDS             complement(11324..11986)
                     /gene="cgpA"
                     /locus_tag="KLC54_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HBD9176442.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSNLISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            complement(11976..12179)
                     /locus_tag="KLC54_000019"
     CDS             complement(11976..12179)
                     /locus_tag="KLC54_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176443.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(12245..13489)
                     /gene="eno"
                     /locus_tag="KLC54_000020"
     CDS             complement(12245..13489)
                     /gene="eno"
                     /locus_tag="KLC54_000020"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HBD9176444.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEDLIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIELESDEYLGEKL"
     gene            complement(13489..14520)
                     /gene="recA"
                     /locus_tag="KLC54_000021"
     CDS             complement(13489..14520)
                     /gene="recA"
                     /locus_tag="KLC54_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HBD9176445.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            14626..15486
                     /locus_tag="KLC54_000022"
     CDS             14626..15486
                     /locus_tag="KLC54_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HBD9176446.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILEFDQSLCVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTYAVKIADANRKILAPMLME
                     RKLIRVNEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDYLI
                     PSEYEEARNS"
     gene            15498..15767
                     /gene="fliQ"
                     /locus_tag="KLC54_000023"
     CDS             15498..15767
                     /gene="fliQ"
                     /locus_tag="KLC54_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HBD9176447.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            15764..16540
                     /locus_tag="KLC54_000024"
     CDS             15764..16540
                     /locus_tag="KLC54_000024"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HBD9176448.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQICDFDGFLIGGANNLLISPK
                     PKNIGILGDGFDFIQILDQNKDFIHLRIGCKTKSSKMYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATFQGEILRENINFDYRFCPLNMPFFWAEFKLNFG
                     FDILKDEALKNARSNQPSGASFGSIFKNPKNDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGINLENEVIII"
     gene            complement(16564..17334)
                     /locus_tag="KLC54_000025"
     CDS             complement(16564..17334)
                     /locus_tag="KLC54_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176449.1"
                     /translation="MKMRYCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDL
                     NQNVANPNLNQQKALFDSSTLIEKKSQITKDEDIDFAIVLTSRKNFGYFLDGFRVSDK
                     EFSTLFAKNLIQSLKLNWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAK
                     MYAKFTDYVVVVNLQDFYVNITNYFITTSKEGVANVNFKIISTSNGKILAAKNAELNL
                     TLKDQDAKQNYQDIVNQMPKMLASVIDNEIKKLKLTIN"
     gene            complement(17374..18138)
                     /locus_tag="KLC54_000026"
     CDS             complement(17374..18138)
                     /locus_tag="KLC54_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HBD9176450.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPLTSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRPVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYNPLNYKSSPFICVSSRNFLQDFL"
     gene            complement(18219..19487)
                     /locus_tag="KLC54_000027"
     CDS             complement(18219..19487)
                     /locus_tag="KLC54_000027"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HBD9176451.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(19602..20777)
                     /locus_tag="KLC54_000028"
     CDS             complement(19602..20777)
                     /locus_tag="KLC54_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HBD9176452.1"
                     /translation="MHQSVIDPQGLIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAVIAYFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEVAKKSFFYIFL
                     LYALSSLIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAIIVMSMIKFLSNSKK"
     gene            complement(20758..21594)
                     /locus_tag="KLC54_000029"
     CDS             complement(20758..21594)
                     /locus_tag="KLC54_000029"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HBD9176453.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLETSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLSADEALKIVRDTKEALPQ
                     SVVMVAGGREVVLQERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(21596..23698)
                     /gene="topA"
                     /locus_tag="KLC54_000030"
     CDS             complement(21596..23698)
                     /gene="topA"
                     /locus_tag="KLC54_000030"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HBD9176454.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKNAIENALKNPRKLDMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEAYAISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAIENARKFIQTNFGKDYLPSKANVY
                     TTKAKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMNPAISQTQ
                     NVFVKNDRALFKISGRKILFDGYYKVYGDMDKDKILPNLKIGENLKIQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVKIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
     gene            23893..25164
                     /locus_tag="KLC54_000031"
     CDS             23893..25164
                     /locus_tag="KLC54_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD9176455.1"
                     /translation="MNGKTYKFHPNDTKMDKKIIQITEKSGFKAAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGATLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     IDKFGKLKFILPAMVVWTISGVSGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAVGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIEAKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFSLLFLVDSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARARAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLIWSIVIFIVCIVFLFLKQKPRIN"
     gene            25247..26359
                     /locus_tag="KLC54_000032"
     CDS             25247..26359
                     /locus_tag="KLC54_000032"
                     /inference="COORDINATES: protein motif:HMM:NF012235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9176456.1"
                     /translation="MLKINNLNKKFGNNEILKNINLEIKEGEFLTLVGESGSGKSTLL
                     RIIAGLEEPSQGEILNLNNQDISKQNPRDRNFAMVFQSYALYPHLSVRENLAMPIKAR
                     AKFIHKLPLASFYIKSYKEFKTHLEEKIEQVATKLKITHLLDKKPKQLSGGQCQRVAL
                     GRAIIREPNIFLMDEPLSNLDAKLRIHTRAELSAMHRELNKTFIYVTHDQSEAMTMSD
                     RIAFLVDGELLQVASPDEMYNNPNHLKVAQFIGTPTINTLCVELKSYGFALINKNLSK
                     HKSLAIRAENCFIDPHSQIKAKIYNIENMGNEYLIYTKLLKNDNNFILSLNTQEGKKL
                     QLDSVVGINFDYSKAFIFDEEGKRMDIKLYNLSFAA"
     gene            26356..27213
                     /locus_tag="KLC54_000033"
     CDS             26356..27213
                     /locus_tag="KLC54_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HBD9176457.1"
                     /translation="MKNSLATFCFISPAVLLMLLFLILPIIWVIILSFSDYQLGNGDF
                     HFVGLINYKALLKDPVFFTSVKNTLIYALIVLPLSVLGGLALALLIESKNSAKSFYRA
                     VFFLPVMATLIAMSMVWEYILHPDIGIFNKILALFGVNTINWLSNKDTVLYTLAGIGV
                     WQQLGYNMILFTAGLMSIPTSVYEAAKLDGLNKTQILFKITLPLLLPILFFVLIISSI
                     KAFQVFDTVQVLTNGGPNHSSEVLLFTIYQEAFMFFRTNYASAISVIFLLFILILTLL
                     KIKFLDKKD"
     gene            27217..28030
                     /locus_tag="KLC54_000034"
                     /pseudo
     CDS             27217..28030
                     /locus_tag="KLC54_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866824.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
     gene            28094..28369
                     /locus_tag="KLC54_000035"
     CDS             28094..28369
                     /locus_tag="KLC54_000035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176458.1"
                     /translation="MKKIFFTLALFGALNLAQAKTELVVSYAYPWFKDLHEKLKEDFE
                     KQNPDIEIRFLAPAQNYEEQSARLLREKMINKLPDVSFNSYSYYLHW"
     gene            28363..29292
                     /locus_tag="KLC54_000036"
     CDS             28363..29292
                     /locus_tag="KLC54_000036"
                     /inference="COORDINATES: protein motif:HMM:NF024808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HBD9176459.1"
                     /translation="MVNKNIPKDLTQNLINKKELGFNDNAFKATTLENKIYAIPFASS
                     LPVVYYNMDLVKQAEWNKELPKTWDELFDLAQKINSLNGKSGVYFGETDTWLILALSL
                     ERGGKLINEKGKVDFNNKAWQETFKLLSDFHTLAKMPAIKRSEAISSFYAGNLGILIQ
                     TSAALTQTEKSINFPLKLSKFPGVQSGGELPVGGSVVMLTNDKNKEAALKYIHFVTGE
                     ANAYVPQYTGYMTSNLLANAKLKDFYNKNPNYTIAPSQIELMGNWPSFPGDNALKATN
                     TLWNYAEKLLMGTSTNYEEIAKQAQEEINALLP"
     gene            29304..29912
                     /locus_tag="KLC54_000037"
     CDS             29304..29912
                     /locus_tag="KLC54_000037"
                     /inference="COORDINATES: protein motif:HMM:NF024811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HBD9176460.1"
                     /translation="MIFFDFDGVLVDSLKLWEQACQFSAKKLGFKGIFPQKPYAKLNP
                     VAHKEIGRILGFNPLEFEKIADEYFLEHIHTLVFFDKTKELLKDLSLDFKLSILSASN
                     ENLVRILLEKEQILKYFTNLHCTSSIPKAQTLKKFKQNHSIMIGDCISDIEAALEADV
                     YSIGVLWGWQDKIMLEKANILVNNHAQLKNAIRSFYEIHPFN"
     gene            29890..30684
                     /locus_tag="KLC54_000038"
     CDS             29890..30684
                     /locus_tag="KLC54_000038"
                     /inference="COORDINATES: protein motif:HMM:NF024258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
                     /protein_id="HBD9176461.1"
                     /translation="MKFIHLTDIHYGDKKEAIYSREPSAMMRLAIEDINKNHSDADFV
                     FITGDLTHKGSLESYTLLKQDLTKLNMPYYLILGNHDDRANALEIFNNLKQDENGFIQ
                     YEIQCNDNNVFLVLDTIKLKSHGGEYCQKRQIWLKNALERNQNKNIFICLHHAPFKTG
                     LRAMDFIGLDEKHSLELYKLFNSYKNIKHLFFGHYHSTLCGRWKDISFSSLKGINHQV
                     KFDLNSNEILLEFRNPEYAVVLLNNEVLNIHYNDFTFDKNLIFHEK"
     gene            complement(30727..31992)
                     /gene="secY"
                     /locus_tag="KLC54_000039"
     CDS             complement(30727..31992)
                     /gene="secY"
                     /locus_tag="KLC54_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HBD9176462.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYVELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(31992..32384)
                     /locus_tag="KLC54_000040"
     CDS             complement(31992..32384)
                     /locus_tag="KLC54_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HBD9176463.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFDSIKSVHKISKSV
                     NKIKLIGASAKDLVSKIKDENISVTGSK"
     gene            complement(32389..32832)
                     /gene="rpsE"
                     /locus_tag="KLC54_000041"
     CDS             complement(32389..32832)
                     /gene="rpsE"
                     /locus_tag="KLC54_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HBD9176464.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            complement(32844..33200)
                     /locus_tag="KLC54_000042"
     CDS             complement(32844..33200)
                     /locus_tag="KLC54_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HBD9176465.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            complement(33210..33746)
                     /gene="rplF"
                     /locus_tag="KLC54_000043"
     CDS             complement(33210..33746)
                     /gene="rplF"
                     /locus_tag="KLC54_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HBD9176466.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            complement(33825..34220)
                     /gene="rpsH"
                     /locus_tag="KLC54_000044"
     CDS             complement(33825..34220)
                     /gene="rpsH"
                     /locus_tag="KLC54_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HBD9176467.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            complement(34230..34415)
                     /locus_tag="KLC54_000045"
     CDS             complement(34230..34415)
                     /locus_tag="KLC54_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HBD9176468.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            complement(34417..34962)
                     /gene="rplE"
                     /locus_tag="KLC54_000046"
     CDS             complement(34417..34962)
                     /gene="rplE"
                     /locus_tag="KLC54_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HBD9176469.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            complement(34966..35199)
                     /locus_tag="KLC54_000047"
     CDS             complement(34966..35199)
                     /locus_tag="KLC54_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HBD9176470.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            complement(35199..35567)
                     /gene="rplN"
                     /locus_tag="KLC54_000048"
     CDS             complement(35199..35567)
                     /gene="rplN"
                     /locus_tag="KLC54_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HBD9176471.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            complement(35567..35818)
                     /gene="rpsQ"
                     /locus_tag="KLC54_000049"
     CDS             complement(35567..35818)
                     /gene="rpsQ"
                     /locus_tag="KLC54_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HBD9176472.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            complement(35828..36013)
                     /gene="rpmC"
                     /locus_tag="KLC54_000050"
     CDS             complement(35828..36013)
                     /gene="rpmC"
                     /locus_tag="KLC54_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HBD9176473.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            complement(36000..36425)
                     /gene="rplP"
                     /locus_tag="KLC54_000051"
     CDS             complement(36000..36425)
                     /gene="rplP"
                     /locus_tag="KLC54_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HBD9176474.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            complement(36428..37129)
                     /gene="rpsC"
                     /locus_tag="KLC54_000052"
     CDS             complement(36428..37129)
                     /gene="rpsC"
                     /locus_tag="KLC54_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HBD9176475.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            complement(37129..37572)
                     /gene="rplV"
                     /locus_tag="KLC54_000053"
     CDS             complement(37129..37572)
                     /gene="rplV"
                     /locus_tag="KLC54_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HBD9176476.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVIVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKAEEKKTVAKKAPAAKKTTTTKAPAKKTTSTKKATAKKES"
     gene            complement(37583..37864)
                     /gene="rpsS"
                     /locus_tag="KLC54_000054"
     CDS             complement(37583..37864)
                     /gene="rpsS"
                     /locus_tag="KLC54_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HBD9176477.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            complement(37866..38696)
                     /gene="rplB"
                     /locus_tag="KLC54_000055"
     CDS             complement(37866..38696)
                     /gene="rplB"
                     /locus_tag="KLC54_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HBD9176478.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVAAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            complement(38698..38979)
                     /locus_tag="KLC54_000056"
     CDS             complement(38698..38979)
                     /locus_tag="KLC54_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HBD9176479.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKVKRFRGRLGQRNDYKKFYVKLPEGVSLENTEA"
     gene            complement(38982..39596)
                     /gene="rplD"
                     /locus_tag="KLC54_000057"
     CDS             complement(38982..39596)
                     /gene="rplD"
                     /locus_tag="KLC54_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HBD9176480.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVSEVNAYLVSVFNAVIIEKSALESITKEG"
     gene            complement(39593..40168)
                     /locus_tag="KLC54_000058"
     CDS             complement(39593..40168)
                     /locus_tag="KLC54_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HBD9176481.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            complement(40178..40489)
                     /gene="rpsJ"
                     /locus_tag="KLC54_000059"
     CDS             complement(40178..40489)
                     /gene="rpsJ"
                     /locus_tag="KLC54_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HBD9176482.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            complement(40687..41448)
                     /locus_tag="KLC54_000060"
     CDS             complement(40687..41448)
                     /locus_tag="KLC54_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HBD9176483.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNEIRY"
     gene            complement(41484..43478)
                     /locus_tag="KLC54_000061"
     CDS             complement(41484..43478)
                     /locus_tag="KLC54_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HBD9176484.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKEISENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRVSHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFSRTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKTTKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(43447..44247)
                     /gene="rsmA"
                     /locus_tag="KLC54_000062"
     CDS             complement(43447..44247)
                     /gene="rsmA"
                     /locus_tag="KLC54_000062"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HBD9176485.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KMLFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDSYLKIYDKLKDEYGRKQRDK"
     gene            44327..44863
                     /locus_tag="KLC54_000063"
     CDS             44327..44863
                     /locus_tag="KLC54_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HBD9176486.1"
                     /translation="MIVCAGGNENFSFAKAIGIGLVESAFHLGQLCFKEKPSKLIFIG
                     TCGLYDKGKILEIYKSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKEKLEEYLKKYHYI"
     gene            44886..45956
                     /gene="rlmN"
                     /locus_tag="KLC54_000064"
     CDS             44886..45956
                     /gene="rlmN"
                     /locus_tag="KLC54_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HBD9176487.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     SLPKYLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRVESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDGLRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSSKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            46053..47081
                     /locus_tag="KLC54_000065"
     CDS             46053..47081
                     /locus_tag="KLC54_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S cluster-binding domain-containing
                     protein"
                     /protein_id="HBD9176488.1"
                     /translation="MLNTTKLLENKLFQERYIKPNIDWYFSYLNGKRGMSRIYKTPYA
                     ILMKKFFLQKYFEKRIKKRIIDIPYLELVLTTKCTMRCQSCNNLMQYFSQNNQYTCTF
                     EGIKKSLEILLSKVDSIARIRIIGGEPLLFKDLPKLIDYLNCQKKILTFSLVTNGTID
                     FKDELINKLKHSKKVRKITISNYKNSPNLKIPLKQEDIIKKLIKNKIPYSLDSNKENS
                     TWFDPEKIYKRGRNKEEIIKNYYYCKMPCVSLMTSEGENLKGKELASNGAIFVCPVSS
                     SLSRLKGLNEFEGDFLNLDDNIEKFFEFYIKDFYKACDYCRDFSKPYKRIPIAIQTNK
                     TLKLEKED"
     gene            complement(47194..47270)
                     /locus_tag="KLC54_000066"
     tRNA            complement(47194..47270)
                     /locus_tag="KLC54_000066"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(47234..47236),aa:Met,seq:cat)
     gene            47406..47493
                     /locus_tag="KLC54_000067"
     tRNA            47406..47493
                     /locus_tag="KLC54_000067"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:47440..47442,aa:Ser,seq:gga)
BASE COUNT        15525 a         8151 c         7008 g        16848 t
ORIGIN      
        1 ttacttaata caccttgtag gggaatagta gatacaaatt ttgaaagtaa aagaattaat
       61 ataacttcaa ctttaaaatt tcaagaaaaa aaagaaaaag tagaagctaa agctgagaaa
      121 gaagaagcaa ataaagacaa tagcgattct acaaacacag ataccaacaa aaaagataaa
      181 cttttggata tatctgctta atctaaaata tgctataatc atctccttga agaatacaca
      241 ataaatgatt ttttgatttt tattaagctt ttaaaacact aaaaaatgaa aaattaaaaa
      301 tacaaaaaca atatcccaaa gtgcatagct tagaagaaaa ccttgcgata cttaaaaaca
      361 acccatatta aatcacaaaa ataaaatata tttaaaaatt tattaaaata tatcttaaat
      421 ataattaata aaaaatatta tcgatacaaa agcttatttt ttagttctat ttaagatttt
      481 taatattata ctagccatta tttattttga taataaatat tatttttatc aaaaaccaag
      541 gataatgata atgaaaattt ttaaaattat atttttaatt ataagtattt ttttatcaag
      601 ctcagctttt gctagagtag atgattatat taatgaagca aatcttatca aagacatgct
      661 aaaacaaagc atagaaactt acaaaaaggg tgataatcta ggtgctaaaa agcttagcga
      721 agatgcgtat tttcaacatt ttgaaaatat ggaaggccct ataggaagaa acataggaag
      781 aaaagccatc accatggagc gtaaatttgt aaatttgcgt cgtatgtata aagatgaagc
      841 tcctttgaca caaattaatg ctttaattga tagtctttat tatgatcttg atgaagtagc
      901 ccctatttta caaaatggat atcgtttaaa agcagaagca agcgatacaa actatgataa
      961 ggctaaagct gaaaaatcaa gcctagaagc caatgccaaa cgcgaagctg atgcagaagc
     1021 tttaatcgca caaatgatgg gcgtggataa aaaagattta gcacaaagtt ctttaaccac
     1081 ccaagcttct acacctgcaa acaacgacac aagcaaactt acagatgata atgcaagcgc
     1141 tgatttacaa gctgccgctg caatggacgc aagattgcaa tttatactag ataacatctc
     1201 taccaaattt tcacaggcag ctaatgcttt taaagaaaaa aactaccaag ctagtaaaga
     1261 ttttttaaat gatgccttat ttagtgatta tcgcaatacc aaagtagaaa ttttagtaaa
     1321 taaatttacc aaagcaggaa acgatcaaaa aattcaacaa gccatacgca cccttatacg
     1381 ccaaatcaac gatgcaaaaa tagatgaaaa aggcttaaga gatggcttag ataacataga
     1441 agaacaaatt tttgatgttt tcttacaaat tccaaattca gaactttcaa gtttgcaaat
     1501 ttcaggcttt aatgatgaaa caaaaggcaa agattatgcc aaagtttcta atgatatcaa
     1561 acttgcttta gatgaaattt taaaaaatta tgatggcttt agtgcttcta tagtagatga
     1621 tttacaagga atttatctag atatttttga agcaagcggt atggaaaata aaatcggtgc
     1681 tgtagatagt ggcttaaaac ttaaaataga aagtttattt tccaaaggtg tggcactgat
     1741 taaagcaagt gcagataaaa aagagcttga agctactttt aatgacttag aacaactcat
     1801 agcaagcagt gtggataaaa ttcaagattc tactccttat tcgctgttta tatgggcttt
     1861 aggtattatt ttgcgtgaag gcttggaagc tttgattatc gttgtagcca ttgtttctta
     1921 tcttgtgcaa agtggtaata aaaatcgtct aaatatcgcc tatagtgctc tttttacagg
     1981 agtgatttta agttttgtta ccgcttttgg agtttcttgg ctatttaaag aaaatgcagg
     2041 acaaagtaga gagcttatag agggtattac catgcttata gccgtattac tactctttta
     2101 tgtgggcttt tggttacttt caaacgcaca aaataaaaaa tggacaagct ttatcaaaca
     2161 aggtgctata gatgctatat caaacaatag tgcaaaaacc ctttggatta ccgtattttt
     2221 agctgtttat agagaaggtg cagaaactgt gcttttttat caagccttgc tttttgatgc
     2281 taaaacaagc actgatttta gtgctgtttt tggtgggctt gggcttggaa ttttaatact
     2341 tattgtttta tattttcttt taaaagcagg agccattcgc atacctgtaa aacaattttt
     2401 ctatatcact tcttacatta ttttttacat ggtttttgtt tttacaggca aaggcatagc
     2461 tgaactcata gaaggaaaag tcattattcc tagtcttata cctatgaatt ttgaaccgat
     2521 tttatggctt ggaatttatc cttactatga aaccttaatc cctcaattta tagttttgat
     2581 catgctaatt attggcattt taataacaaa acaaatttca aaaaaaggag taaaatcatg
     2641 ataaaaaaag ttttatcagt agttgctgca gctgcggtta ttagtacaaa tttatttgca
     2701 ggcgaagtgc caatcggcga tccaaaagaa cttaatggca tggaaatagc cgctgtttat
     2761 ttacaaccta ttgaaatgga accaagaggt attgatctag ctgcgtcttt agcagatatt
     2821 cacctagaag ctgacattca cgcacttaaa aacaatccaa atggttttcc agaaggtttt
     2881 tggatgcctt atttaaccat agcctatgaa cttaaaaata ccgacacagg tgcgattaaa
     2941 cgcggaactt tgatgcctat ggtggctgat gatggtcctc actatggcgc aaatatcgct
     3001 atggaaaaag ataaaaaagg tggctttggc gtaggaaatt atgaacttac tttttatatc
     3061 tcaaatccag aaaaacaagg ttttggacgc catgttgatg aagaaacagg cgtgggtaag
     3121 tggtttgaac cttttaaagt agattataaa ttcaaataca caggcacgcc aaaatgattt
     3181 tacactcgga ttttccgagt gtttaaatat ttttattttt attgaaaaat taaaataaca
     3241 atgtttaaag agtaaattat gagtatatat tttgtgcatt ttcttatcag tgttttaccg
     3301 ctaagtattt taatggcctt tatcactcct gataaaaaat atatttttaa aagtttttta
     3361 gtagtttttt tgggcttttt atttggatat tttgcttttt ttatcgcagc acaattttta
     3421 aaaaccgaaa atttaatctt taattttgat tttgttttta taggtttatt gctagtaagc
     3481 tttatatttt atttttggaa aaaaattgaa attttaaatt ttattttatt gggaatttta
     3541 agtttttgca ccgctttgca ttattatttt ttaagtcaag atttccctat ttttactagt
     3601 tctttaatcg atagcgaagg tataagttct ttaggtttta ttgctttagc cttgcttgtt
     3661 tgtattttga ttttcttctt tttaaaatgg caaaaaaatt ttaatcaaaa aacaagcttt
     3721 atgctgtttt tactgcttat ccttatagaa agcgataaag ctctagccaa tatcttgctt
     3781 actttaatgc gaaattccat catagaaact catacttttt tggtgagttt tgtaggaaaa
     3841 agtaattatt ttggtgtttt tggaatttat gtttatttaa ttttcatcac ttttttagca
     3901 ttcttaagcc taaaaattcg caaaaaaaat ataagcaaaa aacaaatttt agatataaat
     3961 tatcgcaaaa acgaagctaa aacaagtctt attaatcgct atttttccag tgtttttatc
     4021 tcctgtgtta taagtttttg tattatttta tactttttta tggtaagctc taagccttta
     4081 accatagatg agcctaaaga aattttaccc aataagaatg gcaaatttat ctttgatata
     4141 gctcttttaa gggacaacaa actccaccgc tttgcttata tcagtgctga aggtaaagtg
     4201 ataaggtttt ttcttatcaa taaaagagaa gatagggatt ctcctgtagc tgtttttgat
     4261 gcttgtatga tttgtggaga tatgggctat atcaaaaaag atggacaact catttgcatt
     4321 tcttgcaatg tgcgtatttt cttgcctagt gtaggcaaaa gcgggggttg caatcctatc
     4381 ccactcaaat acgaatacga tggtaaaaaa atcaccatag atgttaaaga tgtaatagca
     4441 ggatctaatt attttagtca aatcaaagaa attgaagtgc aagatcctgt atcaaaaaca
     4501 aaaattataa acacccaagc tcctttttct tatagctata aagggattac ttattatttt
     4561 tcaaatcaaa acaactatga agaatttaaa aaagatccta caaaatatgt agaagaaaac
     4621 gaagcccaat ttttaatcca aaggagaaat gatgttggct aaaatgattt ttaactctat
     4681 atttaaaaac aaaattcaaa aatttttagc ctttcttact tgttttttag ccacgctttt
     4741 gctctctact atgctaaata ttaccctaag tataggcgat gaagtaacta aacaactcaa
     4801 aagctatggc tctaatatcc ttgttttacc caaaggctca agtcttagta tagaaatagg
     4861 taatgaactt tatgaaccct taaaaaacaa aaactaccta gaagaaaaaa atttatatat
     4921 gattaaagac atttattggc gtaacaacat caccgcactt gctccttttt tagaaggtaa
     4981 aatcacaatt gaaaactccc agcaaaaagc acttatttat ggcacttatt ttcaaaaagc
     5041 cataaaaatt aaagatgatg atgattttat cacaggtata aaaagtcttt atccttattt
     5101 agcagtgcaa ggagaatggg caaaagatga tagcaatgaa atcatgctag gcgaagactt
     5161 tgctaaaaac aataaactaa aattaggaga tactatcgaa ctcacaggag aaaacaatca
     5221 aagcaaagaa gcaaaaatcg taggcatttt acttcatgcc aatcctaaaa tgtcaaataa
     5281 aatcatcgct cctttaaatt tagctcaaga tttactcaac aaacaagggc tttactcaag
     5341 tgcagaagta agagctttta ccatacctga atcagccctt tctgaaaaag tgcgtcgcat
     5401 gggcgaagaa aaattagatc agttagaata tgacaaatgg tattgctcag cttatgtagg
     5461 ctcaatcgct agtcaaatta gcgatggctt accaggtgct gatgcaaaag ctctaaatgc
     5521 tataagcgat gctcaaagct tggtggttaa aaagatccaa tccttaatgg gcattacttg
     5581 tattatttgt cttattgttg caagtattgc gatttcaagt ctgatgagtt ctgaaattca
     5641 tcgtagaaaa aaagaaatag gacttttaaa agtgcttggt gctaatactt ttcaaattta
     5701 tctcatcttt gctagtgaaa atttaatcgt agctttattt gctgctttat ttggctttat
     5761 ttttggcaca gcactttctc aaatcatcag tcttagtatt tttggatatt ttattgatat
     5821 agcctttata gctttacctt taagctttat ttttgcagga cttattgcct tactaggttg
     5881 cttgcttcct atcaaaaata tcacacaact ttcagctgca ggagtgcttt atggtagata
     5941 agtttttcct taatgagctt tttaaaagca ttagcttttc ttatcaaaga ctttttataa
     6001 tagttttaag tgtttttata ggagcactta cttgctcagc ttttttaaat atttattttg
     6061 atattgacac caaactttct aaagaattaa aagcttatgg agcaaatgta atgataagtc
     6121 ctaagcagga tgaaaatttt atctccaatg ctgagtatga aaaaataaaa gaaaatttaa
     6181 aggctagggc tttaactcct tttttgtatg attttttaaa tttaggcagt acaagcggag
     6241 tggttttagg cactgatttt agggctttaa aaatcaccaa acctttttta gaagttaaag
     6301 aaggaagctt ttccctaaat gattttgatg aaaattcagc ctttttaggg gttaatttag
     6361 ccaagcaact gggcctaaaa acaggcaatg aacttcaaat ttacaatcca aacaatggaa
     6421 aaagcataaa acttaccata aaaggcatac tttcaagcaa tgatgaattt gatagcattg
     6481 ttttagctcc tttaagcgtg gtgcaaaatt taagcgatag agccggtatt aactatgcta
     6541 atgctgtagt ttatggaaat tttgatgaag ttaaagccaa aacacaagca atcagcaatg
     6601 aattcatcga tgcaaaacct atatcttcag tatccttaag tgaaggttta gtgcttggaa
     6661 aaatcaaagc tttaatgttt ttaatcatac ttgtagtatt gatcatagtc actactagcg
     6721 ttaatacgac cttaagctct attatatttt ctcgcaaaaa agaaatcgca ctgcgtttag
     6781 ccttgggtgc gaaaaaaagt gaaattttta aactttttgc tagtgaatgc tttatagtaa
     6841 gtttttttgc tagtttaatc ggagcttttt gtgggatatt tttagccaat gtctttggtt
     6901 atttgatttt taattctagt attgatttta gatttatagc tgtttttata gccttaatca
     6961 tttctttgat ttttgccttt ttggctgcat tttttcctat aaaaagagca ttaaaaatca
     7021 atgtgtgtga aaatttgaaa ggtgaataat gaaaaaagaa cttattaaaa taaacaactt
     7081 aaataaagaa tttggcaaag ttaaagcctt aaacaatatc aacttaagcg tctatgaagg
     7141 agaatggctt gccatcatgg gtccatcagg aagtggaaaa tcaacgcttt taaacatact
     7201 atcactcatg gacactccaa gctctgggga gtatatctta gacaatgaaa acctagagca
     7261 aatggatgag gagcaaaaaa tcaccttacg tcgtgaaaaa atagggcttg tctttcaaca
     7321 atttcatctt atcccctatc ttaacgcctt agaaaatgtt atgctctctc agtattatca
     7381 ctcaagcgta gatgaagaag atgctaaaat ggttcttgaa aaagtaggac tttcgcacag
     7441 actcactcat ttacctagcc aattaagtgg tggagaacaa caaagagttt gcatagcaag
     7501 agctttgatc aacaacccag agcttttact cgcagatgaa cccacaggga atttagatga
     7561 agccaatgaa caaatcgttc ttcaaacctt gcaaaaatta aaaaatgaag gcaaaaccat
     7621 agttttaatc acacacaatc ctgatttagc caaattcgca gatcgaaccc ttatcttaca
     7681 acatggggtg ttaaaatgaa aaaaagcctt ttaatcttaa gcattttgtt cttgctcaat
     7741 gcttgttctt ttgaaaattc aaaagatact ggaaaagttg gagaaaaaag cgctgaaatt
     7801 tcagctaaag ataccttagg aaaagctgta aaacttgctg atgataatac aagtttaaaa
     7861 gttttggtct tttttcaaaa tggctgccct tcttgcttaa aagaactccc ttctttagat
     7921 gaattcatac aaaatcaccc caataaaatc agtgtttatg ctataaattc catcgataat
     7981 gccaatgtgg ttaaggtttt agccgaacaa tttgacttta aaaatgtaaa agttttaaaa
     8041 gacgatctta aaatcaccaa tgatcgttat gctgtgtttg caacccctac taccatcatc
     8101 attaaagatg ggatgataaa agatagaatt ttaggagaaa aaccatggga atttttcgaa
     8161 tccaagctta tttctttgct ttaattatag ctttattttt tgtagcttgt gatagtggag
     8221 aaaattttaa agctttaaat agtgataaaa cctataattt tgcctacaat ggttttgaaa
     8281 aaagcctaaa actaaatgat aaagcacaaa attttgcctt agtatttttc acaaaagatt
     8341 gtggagtttg taaagaacaa attcctattt tgcagaattt ggctaaaaat tatgatttta
     8401 atatctttgt ggttttaggc gatgcaaatg atgcaaatga tgcaaaagct tgggctgatg
     8461 aaaaaggttt atctaattta gcaatgtttt atgaaaaaag agcagctaaa tacctttcaa
     8521 gtgccattgg ggaaatatat ggagtgcctg tgcttagttt tttcaaagaa ggaaaaatgg
     8581 atgaaaaatt cataggctta actccttata gcatacttga aaaagaaatc aaaaaagtaa
     8641 aaagctaaaa atttacttta aagcttttta tctcctataa aatatccata aagctcatag
     8701 cttccatctt ttttcatcaa aattacagga tatttttcac tataaccttg ttccattcct
     8761 gggcttcctt gcggcatgcc aggagctgaa attcctataa catctttagg cttgttttca
     8821 agcaaccata ctatggcact ttcaggaaca tgcccttcaa tagcatagcc ttcgatcaca
     8881 cctgtatggc aactttgata ctcatctttt atacccattt tttctttgat tttaagaaaa
     8941 tcattggttt tatgaacgct aacctcataa cccttagctt tcatataatc agcccaaaga
     9001 tcacaacagc cacaagtagg actttcataa acttgtattt ccttagcctg cgtaagagtg
     9061 agtaaaaaaa gaatagttaa aattgttttt ttcataatcg ctatcctaag taaaaaatat
     9121 ataataatac ttttataaag ttaatatcat cacattttta acactaaaaa tgaatttaca
     9181 aaaatttaat caagaaaaga tttttaatga gtgctgattt tgtctttaca gcaaagatat
     9241 aaaagataaa acgatttaaa aaactagaaa tttttaactt aaaaagctta aaatttagat
     9301 atattttata ctatgttttt tatagtcaaa acctttatgg tgtgaaagct ctattatttt
     9361 agagctttca agtattattt gaaattatag cgcctcgtag agataccaga acgacaatta
     9421 acattattgc ttaattttat aggtctatca agatgatcac attcaatatc ccattcagca
     9481 gcccaatttg tttttctatc tacaactaag aattcattat aataaacagt ctttcctttt
     9541 gctatttctt gtttcattac tttaaaactg cccctttgaa taacattata gtgttctgga
     9601 tcatctttct tgatactttc tatagcgtaa atctctaagt tatcagtgtt aaattgattt
     9661 ttcattcctt ctttagcgtt atctaaagct atttttgcat aggtatcatc tcctcctgat
     9721 actttaacta aattagaatc atgtatagtg ataacccctg caaatgctga cacatttaaa
     9781 gcaactaaag ctgccaaagc taaacctaat tttttcattt tatctccttg aattgaattt
     9841 tgtatatttt aattattttt caaatctttt gcaagataat ttttaaattt atctaaatta
     9901 aatttgcatt ttatctaaca atcataagaa attttaaaat gaaataaaaa tttatgagaa
     9961 atcaactctt gtttgaaaat gataaaagta agtggtgcgg atgaaaggac ttgaaccttc
    10021 acgcattgct gcaccagatc ctaagtctgg cgtgtctgcc aatttcacca catccgctaa
    10081 agtggtacgc ccaagaggat tcgaacctct gacctacggc ttagaaggcc gttgctctat
    10141 ccagctgagc tatgaacgca tataaaatct tggtggtgcg cccgatagga atcgaaccca
    10201 taacctacag atccgaagtc tgtcgctcta tccagttgag ctacgagcgc ttagtggggt
    10261 gagtgatggg aattgaaccc acgaccctca ggaccacaat ctgatgctct aaccgactga
    10321 gctacactca ccattttgta taaatttata aaaaatggtc ggggtgaaag gatttgaacc
    10381 ttcggcccct tggtcccaaa ccaagtgcgc taaccagact gcgctacacc ccgaataaat
    10441 aaaaggaaat attttatcac aaaataattt taaagtcaag gattttcatc tcttattctt
    10501 aaaaaaaccg gaaagcgagg taaggaattt ttggtcaatc cattaaattt ataagtcaca
    10561 atactaccaa tttttggagg attttttcta tcttcatctt ttaaaccact gcctatttta
    10621 atgatttgtc cattaggcat tttacaaagt aaggcaccta cttgattttc aaatttaccc
    10681 ttacccttgc gaaatcctac caactcacat tctgcatcat catagggttt taatttcata
    10741 gcatttttac ttctgccttt ttcataagga cttaaatttt tgcgtataac aataccttca
    10801 ccttgatttt ttataatgct ttcgtaaaat tgatttaaat tattttgatt ttcaactgga
    10861 atttgaggaa taatttttat ataggcacta ggatattttt gtaaatactc ttctaaaaca
    10921 gccaaacgat ttttaagagt gcaagtagaa atttgaaatt cttcgcaagc atttggcaca
    10981 tcaaaaatat tataagttac ttccttccat aaggtcaaat tgctatcgcc actacgaatt
    11041 aaagctgaaa tttcatcaaa tttatttctt gctatccaaa gctcaccatc aatagcaaaa
    11101 ggagggaaat tttttgtaaa aaagtcagga gtttttattt tgtaattttg gcgagttttt
    11161 agatatttcc catcccaaat tccacgcacc ccatcaagtt tttcgctcat caaataagca
    11221 ttaaaatctt tagaattaaa atcttgctta tcgaatttgc taagaagtaa aatttcatta
    11281 gcaaaaacta aacaagcaca acatattaaa aaaataaatc tcatcaaagc agattaatca
    11341 tatatccagt tgcatctttt tgaatattat aattataagt tccatcaaga tatattacaa
    11401 gtcgataata tcctttatga gatccaaagt ctatgcgttt aaaaatagaa ttactaaggc
    11461 gtatgttttt tgtagggcta atcaaattag atctaaaatc tataacgatt ttacttggat
    11521 ttcctactga aaaatctgtg atcatttcat cactagtgtt aagttttatt ttgtttttat
    11581 aaaccgcgta agaaataaaa tcataaatct ttgcaacctg taaaggtatt tcaacattgg
    11641 ctgttgagtt tgattcttgt ttagagctat ttttttcagg tatagtaact gaaacatcaa
    11701 gtacttttga aggatcaggg cttttaaatc ttgatatagt ataagtatcg tgccaatcaa
    11761 tacttttatt aacatctaaa tcgatcttat cttcacttcc gtctaaattg atataattaa
    11821 aagtgatgct ttttaaaatt cttgcactag aattaaattt aacttcctct ttttgaaatt
    11881 caggtggagc aaccaaggtt atattttgat ctgtcttgaa aggattttca tcagcatata
    11941 aaagagaggt aaaaataaaa aatattgcca aaattctagt tttcatttgg gtataatcct
    12001 tttaattcaa aataatcttt ttgtgcttta gcattttgtt ctttgagcaa aataatcttt
    12061 ttattaagct cttctttggt attttctaag cttaataaag tatctaaaga atactgccca
    12121 aaaaacatat tgccaaaata aatcgctcca attacaacaa gaaaagccca aaaaatcatt
    12181 tttataacat gggtataaaa actttttttt cttgtgcttt cgtcgtattc tttaagtaaa
    12241 tcgctcagag cttttctcct aagtattcat cgctttcaag ttcaatttca agcaagcgat
    12301 tgtattttgc ggttctttca cctcttgcta gggctcctgt tttgatttgt cctgtattta
    12361 aagccacagc aaaatccgct ataaaagcat cttcactttc gccgcttcta tgactcatca
    12421 cacatttata gttatttctt tgcgctaaac gcacagttct catagtttgg gtaatagttc
    12481 cgatttgatt tggtttaata agcacagcat ttgccatttt tttgatgata ccttctctta
    12541 aaatatcttc attggttaca aacaaatcat cgcctacaag ctgaatttta ttgcccaatt
    12601 tttcagtaag cttgatccaa ccttcaaagt cattttcagc taagccatct tcgatactgc
    12661 aaattggata ttttgcacaa agttctacat agcgttcgat caaatcctcg cttgaaaaag
    12721 ccttgccttc catgtgatat ttgccatctt tgaaaaattc tgtacttgcc acatcaagag
    12781 cgatttttac acgattttca taacctgctt ttttgataca agtcattaaa aggtcgatag
    12841 gttctgtgtt gttagctaaa tttggagcaa aaccaccttc atcacctaaa gctgtagaat
    12901 gtccagaatt tgcgagttct ttttttaata tcgcataaat ttcacaaact gaacgcaaag
    12961 cctctttaaa gctagtaaaa ccaaaaggca taatcataaa ttcttgaaaa tctacattgt
    13021 tgtttgcatg agcaccgcca tttatgatat tacacattgg cacgggtaaa atgctcgcat
    13081 ttgcaccacc taagtaacga tacaaaggca ttcccaaagc agccgcagcc gcacgagctg
    13141 ttgccatgga tacgcctaaa gtcgcatttg cacctaaatt tgagtaatta tttgttccat
    13201 caagctcacg caaagtatca tcaagttgag tttgattaaa agcatctagt cctaaaattt
    13261 catctgcaat ggtctcattg acatttgcaa cagcttttaa aacgcctttt ccgccaaatc
    13321 tttcatcatt atcacgcaat tctaaagctt cttttgaacc tgtacttgca ccacttggaa
    13381 ctatggccgc acctacactt ccatcgctta gcgtaacttc ggcttttacg gttggatttc
    13441 ctctactatc aagaacttca taggctctaa catcttcaat tactaacatt attcttctcc
    13501 ttcgtcatct tcgctaccgc tgatcatacc ttctattccc atagaatttt gaattgcttt
    13561 tgtgatttca tctgcaattt cagggttttc ttttaagaaa gcttttgagt tttctctacc
    13621 ttgtccaagt tttttatctt tataagaaaa ccacgcacca cttttatcta cgatatcaag
    13681 ttttacacca taatcgatca attcaccttc acgacttaaa ccctctccaa acatcacatc
    13741 aaattcagct tgtctgaatg gaggagcaac tttattttta actactttta ctttaacgcg
    13801 gtttcctata ggttcttcgt tttgttttaa ggttgctact tttctaacat ctaaacgcac
    13861 agaagcataa aattttaatg catttccacc tgttgtggtt tcaggagtac cataacccat
    13921 agcaccgatt ttcatacgaa tttggttgat gaaaattact gtggtattca ttttatgaac
    13981 tatacctgta agttttctta gagcttgaga cataagtctt gcttgaagtc ctacatgttg
    14041 atcgcccata tcgccttcaa tttctgcttt tggggtaagt gctgcaacgc tatctactac
    14101 aataagatct actgcaccac ttcttgctat agtttctaca atttctaagg cttgctctcc
    14161 aaaatcaggt tgagaaacat acaaatcatc tgtatttaca cctaaatttt tagcatattt
    14221 tacatcaaga gcgtgctctg catcaataaa agcacaaact ccacctgctt tttggcattc
    14281 tgcgataatg tgtagagtta gagtggtttt acctgaactt tcaggcccat aaatttctat
    14341 aattcttcct tttggaacac cgcctatacc taaagcaaga tcaagtccaa ctgaacctgt
    14401 gcctatgcta tcgatttgct cgacttcttt atcccctagt cttaagatag tgccttttcc
    14461 aaaggtttta tctaaacttt ttagggcagc gtctagagat tttcttttat tatcatccat
    14521 aactttcctt aaaaattcta aatttttagt tagaattcta acaaaataaa attaaataat
    14581 gatttatttt gctagaatta aagcaaagat ttaaaggaag catagatgaa aaaaattact
    14641 attgcacatt ctcctgatgc tgatgatatt tttatgtata tggctattaa atttgggtgg
    14701 atagggaatg attttgctta tgaaaataca gctttagata tacaaacttt aaatgaattt
    14761 gccttgaaaa atgaatttga tgctacggct atttcttttg ggctttatcc tttaatcgct
    14821 tctgagtatg cgcttttacg cacagcagtg agttttggtg aaggttatgg gccaaaactc
    14881 atcaagaaaa aagacacgca tttaaaaaga aattttaaag tcgctttgag tggagcaaat
    14941 accaccaatg ctttgatttt tcgtatgaaa taccctgaag caagaattat ttataagaat
    15001 tttttagaca ttgaaaatgc agttttaagt ggcgaagtag atgcaggagt tttaatccat
    15061 gaaagcattt tagaatttga tcaaagtctt tgcgtggaag cagaactttg ggatatatgg
    15121 cttgaatttg ctaaagaaaa tttgcctttg cctttaggtg gaatggcttt gcgtcgctct
    15181 ttgcctttaa gcgatgcgat taagattgaa agagatttaa cctatgctgt aaaaattgcc
    15241 gatgcaaatc gtaaaatttt agcccccatg cttatggaaa gaaaacttat ccgtgttaat
    15301 gaagaaaaac ttgatactta tcttaattta tatgccaata aaaactctat tagcatgaat
    15361 caaactcaac ttttagctgt agatacgctt tttaaactag gatatgatta taaattttat
    15421 gataaaatca tacatgtaaa tgattatctt atccctagcg aatacgaaga agctagaaat
    15481 tcttaaaaag gataaaaatg gacgaaagta ccttagttgc tcttggagtg caaaccttta
    15541 aaatcacact tttactttcc ttgcctatgc ttttagcagg gcttattgca gggcttgtaa
    15601 tcagtatttt tcaagcaact acacagatta acgaaatgac actttctttt gttcctaaaa
    15661 tcatcttggt tgtggttatt ttaatctttt taatgccttg gatgactaca actatgattg
    15721 attttactga gaatatacta aatcaaattc caacttttat caaatgatca ttgattttaa
    15781 aaaatactct tctgtacgta taggaaatga atttgaagtt ttagttttgg atcaaatttg
    15841 tgattttgat ggttttttaa taggtggtgc aaacaacctt ttaattagcc caaaacctaa
    15901 aaatatagga atattaggag atggttttga ttttatacaa attttagatc aaaataaaga
    15961 ttttatacat cttcgcatag gctgcaaaac aaaatcaagc aaaatgtatc gctttgccaa
    16021 agaaaataat cttaagggtt ttgagtattt aagcaaaatt cctggcacac ttggtgggct
    16081 tttgaaaatg aatgcaggac ttaaaggaga gtgtatcagt caaaatttaa ttaaaattgc
    16141 cacttttcaa ggcgaaattc taagagaaaa tataaatttt gattatcgtt tttgtccttt
    16201 aaatatgcct tttttttggg ctgaatttaa attaaatttc ggttttgata tccttaaaga
    16261 tgaagcttta aaaaatgcaa gaagcaacca acctagtgga gcaagctttg gctctatctt
    16321 taaaaatcca aaaaacgact ttgcaggacg tttaatcgaa gctgtaggac ttaaaggatt
    16381 tagcaaggga gatgctatgt taagcgataa acacgcaaat tttttaatca ataaaaaaaa
    16441 tgcaagtttt gaagatgcgt tttttcttat cgaattggct agaaaaaaag tctttgaaga
    16501 atttggcata aacttagaaa atgaagtgat tattatctaa aaatttttca atatatcttt
    16561 aaattaattg atagttaatt ttaatttttt tatttcatta tctataacac tagctaacat
    16621 ttttggcatt tgatttacaa tatcttgata attttgtttt gcatcttgat cttttaatgt
    16681 caaatttaat tctgcatttt ttgctgcaag aatttttcca ttgcttgtag aaataatttt
    16741 aaaattaaca ttagccacac cctctttact agttgtgata aaataatttg taatatttac
    16801 ataaaaatct tgcaaattta ccaccacaac ataatctgta aatttggcat acattttagc
    16861 cttatctttt tcttgtgtta aaaaaggact tacatttata agttttgcat ctttagggct
    16921 aaaatatgac aaagttttag gactttgata aataccattt gcagcagaat taacccaatt
    16981 aagctttaag ctttgaatca aatttttagc aaataatgta gaaaattcct tatcactcac
    17041 cctaaaacca tctaaaaaat aaccaaaatt tttcctagaa gttaatacaa tagcaaaatc
    17101 aatatcctca tctttggtga tttgcgattt tttttcaatt aaagtagaac tatcaaacaa
    17161 tgctttttgt tgatttaaat ttggatttgc aacattttga tttagatcta ttacttcaaa
    17221 gctatctgcg cttttttcaa ttttaataac ctttttctga gaaaaattat tcgctaaaag
    17281 attagaactt aaaactaaac ttaaaaacaa aatgaaacaa tacctcatct tcatccttat
    17341 aaactattta aatataaaat tatactcttt attttataaa aaatcttgta aaaaattcct
    17401 agatgaaaca caaataaaag gactggattt ataatttaaa gggttatata aaatgtattt
    17461 tttagaaaaa tcccccataa atcctccatt ttgattaatc aaaaaatctc ctgctacaat
    17521 atcccaaata ttaagctttt caaatctttt ataaactcct gccctagcct ctaaaatagc
    17581 acaaaatttc aatccagagc ctatattaat agcttctaat tgatgctctt ttgcaaagtc
    17641 ttcatcttct ttactaagat gattaacact caataaggct ttatatttat ttttctcgta
    17701 ttcttgctgg tcaatttgca aaggtttatc gtttttataa accttggttt ttgcatgagc
    17761 atagaatata tcaccttttg atggattttg tataagcgat aaaacagggc gattgtcatg
    17821 aactaaactt atcataacgc aaaattcatc gctgcctttt aaaaaaccac ttgttccatc
    17881 aagaggatcg ataagccaaa aagtttttaa ttcttcacac tcttctttgc tgagtaattt
    17941 ttcttctgat aaaattttaa tatccgtaga acctaaaata tcatttagaa ttttattaga
    18001 agcaagatct gctgatgtaa gcgggctttt atcttctttt tcccaagttt tgaaattttt
    18061 tctctcttct aaaatagctt tagaagcttg attgctagca tttatagcaa tttctaaaaa
    18121 tttatcaaga ttaagcatga ttataagact ttctataaga ttttttaaaa ttatacaaga
    18181 agattttgtg gaatttttaa tttccacaaa aattttaatt aaattttact agtttcaccc
    18241 aaataaagtt gtcttggacg gactatttta agactttctt gctctttttg ttctatccac
    18301 tgagctatcc atcctggggt gcgtcctata acaaataaag tagcaaacat ttcatttgga
    18361 atacctaagg cttttaaaat aagtccacta tgaaaatcaa cattcggata tagccctctt
    18421 tgaacaaaat aatcatcgct taaagcaatc tcttctatac gcgttgctac tttaataaga
    18481 ttggtatcaa tacccaactc atcaataagt tgatcacgaa gttttttaag tacttttgct
    18541 ctaggatcaa aatttttata aaccctatgc ccaaagccca tcaagcggaa aggatcgttt
    18601 ttatctttag ctcttttgat gaattcatct actctatcaa cactacctat ttgctcaagc
    18661 attctaataa caccttcatt agctccacca tgtgcatgac cccaaagcgc accaatacct
    18721 gctgctatac aggcataagg atgagcatga gttgaaccca cagcacgaac cgttgaagtt
    18781 gaagcatttt gctcatgatc tgcatgaagc ataaaaactg tatcaagtgc ttttacttct
    18841 ataggtttaa gctctacatg atcgtaagga taagttctta acatatataa gaaattttct
    18901 gtaaaaccac gatctaaatt tggataagcc ataggaaagc cgtgtttata tctataagcg
    18961 gtggcgacta tagtagggat tttagctact attctagctg ccatttccat atattcttct
    19021 tttacattca tgtttaaatg atcaggataa aaagcactaa gcgatgaaac agcaccttgt
    19081 aaaactgcca taggatgagc attatcaggg aaagaatcaa aaagacgatg cataccttca
    19141 tggataaaag aacgtttttt catttcataa cgaaatgctt caagacgcgt agcatcaggt
    19201 aattctttat aaagcaaaag atgaaccaca tctaaataaa gtttgttttc agcaagccac
    19261 tctataggat agccacggtg cattaaaatt ccgttttctc catcaatata agtgattttt
    19321 gatttacaag tagctgtaga agtcaagccc tcatcataag aaaacattcc tgtttgttta
    19381 taaaaacttg acatatctac aacgcttggg ccagttgtac catcatatat aggaaattca
    19441 tagctttttc catttctatt atcggttata gtaacggaat ttgacatttt cgctcctttt
    19501 attgttactt ttattaattc taacaaaaaa ggacgattat gagttttttt attattaaat
    19561 ttttaagatt ttgtttgctt ttttgagtaa aaaagtaact ttcatttttt agaattagaa
    19621 agaaatttaa tcatactcat aacaataata gcctcaaata acgctgttaa aataagcgct
    19681 gaataaagct tctcatcaat aaccttgccc gaataaccca gagtagctgt tgctataagc
    19741 aaggttaaag gcatagaatg actaagacca aataaaatca tatttttaaa accaattctt
    19801 tttaaaaaaa cacttgcaca taaaattctt aaacccacca taacaaacat aagtaaaaat
    19861 gcttgtaaaa cgattttata atctaaaatc attttaagat caaaggttga acctatatgg
    19921 ataaaaaaaa tagggatcaa aaacccatgt ccaaaagtag aaagcttatg ctcaagatct
    19981 tttttatgat caaaaaaagt agctataaat gagcctgcta taaaagaacc aagaacgatt
    20041 tcaagttttg taataaccat agcaacaatg atcagtataa aaatcgccat acaaaatctt
    20101 atatcttttt catttttatc ttcccatggc ataagcacaa ctttaagctg aggataccac
    20161 caaaaaagca caccaagcat tttaaatccg agcaaacaaa gtcccaaaaa gatattaaga
    20221 tataaaatac tttgcgctac atcaataata cctgttcctt cgcgcaaaaa agctcccgct
    20281 atagtcaaaa gcacaataga aatcacctca gctaaagtag ctactatcat agcaatattt
    20341 agccaataac actcttttcc aaaatcctta aaaagcaaag ataaaagccc tacactcatc
    20401 acaggtataa tgataacaaa tactaaagaa agtccaaaaa tccatactat aagagaagat
    20461 aaagcgtaaa gtaaaaaaat ataaaaaaaa ctttttttgg cgacttcttt atccatatta
    20521 aaaaaggctc ttaaatttac ttccataccc gctataaaca ttagataata aaaacctaca
    20581 ttggctaaaa gtgcaaaatt ttcacttttt cctataaaac caaaatatgc aattaccgca
    20641 cctaaaataa tttcagtagc tgaaagaggc aagcgtaaaa tttttgcaat atgcggagaa
    20701 aaaagtaagc ataaagctat aacaataaga atttttagat caattaaacc ttgcggatca
    20761 atgacactct gatgcaaaag taaatcccat ttcttttaat tttattatat cttgacttgg
    20821 ttcttcacct ttagtggtta aataatcccc tataacaata gccccagcac ctgcttgaaa
    20881 aatttcatac tgcctttctt gcaataccac ttcacgccca cctgctacca ttaccacgct
    20941 ttgaggcaaa gcctctttgg tgtcacgcac gatttttaaa gcttcatcag cactaagcct
    21001 tggaacttgt agttttaaat tttcattggc tataaaaaaa ttaataggtg ttgaaaaagg
    21061 ctgtaattct tgcaaagatt ttctaaaact tagtctatct tcttcactct cacccatacc
    21121 ataaattcca ccacaacaaa gcataagtcc tgcttcttta gcgtttaaat tggtttgaaa
    21181 tctactttcc caagtatgag tggtgcaaat ttgtggaaaa aattccttag aagtttcaag
    21241 attgtgatta taagaaaaaa ttcctgcttt tttaagttct ttgagttgtt ccacgcttgc
    21301 cataccatta caggcaatta aaagcaaatt aggcacttct ttttgcacag ccttagcagc
    21361 ctcacaaaca tactcaagct tttcatcatc aagcccaagt cctgctgtaa ccaaacaaaa
    21421 acccaaggct tcatttttct ttgccatttt cgcttctaaa acgatttgtg aaagttcttt
    21481 gcgacgatat ttttgaatat ctgtttttac atgggcactt tgggtacagt atttacagtc
    21541 ttctgaacaa tttccactcg ctatatttga aatagcacaa agcatgattt gcattctaat
    21601 ccttcatttc ttttttgatt ttgcacttta agcattctag gaatgtacct tttttaagct
    21661 cttttatcac taaagtttcg ccacactctt cgcatttttc ttcacttggt ttgtatttgc
    21721 ttataaaatt gcattttgga taagcactac agccataaaa tttaccgcgt tttgaaaagc
    21781 gttctacgat ttcacctttt tgacaacttg gacaagtaat acctgtacca ttagctttag
    21841 cttttgcggc agtattttcg ctttcatttt tactttcact ttttaaattt cttgaatact
    21901 tacattttgg gaaatttaaa cacgctacaa attctccaaa acgccctttt ctaatagcaa
    21961 gctccccgcc acaatcagga caactttcac ctagttttgt gacagttttt tgactagcaa
    22021 tttttgtttt tccttcttcg atttttctca taaaaggata gtaaaattct tttaaagttt
    22081 cttgccaatc tgccttatct tcagcgattt catctaaagt attttcaagg tttgaagtaa
    22141 atttactatc tactatatcg ctaaaatttt tttcaagcac ttcggttaca ttaaaagcaa
    22201 catcactagg aatgagttgt tttttgtcta tttttacata atcacggctt gtaagtatag
    22261 aaattgttgg tgcataagta gaagggcgac ctatgcctaa actttcaagt ttttttacaa
    22321 gtcctgcttc tgaatacctt gaaggtggtt cggtaaaatg tgagttcatt tctaaatttt
    22381 gtatttttaa attttcacct attttaagat ttggtaaaat tttatcctta tccatatcac
    22441 cataaacttt ataatatcca tcaaaaagga tttttctacc gcttatttta aaaagtgctc
    22501 tatcattttt tacaaataca ttttgagttt gagagatagc aggattcatc tgacaagcta
    22561 aaaagcgatt gtaaataagt gtgtaaagtt ttaactcatc tttgtctaaa aatttggccg
    22621 caatttctgg agtaaaactt aaatttgtag ggcgtatagc ttcatgggct tcttgagcac
    22681 ctttagcctt tgtagtatat acatttgctt tgcttggaag atagtctttg ccaaaatttg
    22741 tttgtatgaa ttttcttgca ttttctatag cttctttggc taaatttaaa ctatcggttc
    22801 tcatgtaggt aataaccccc atcacgcctt catgggtatt tactccctca tagagttttt
    22861 gagctatcat catggttttt ttagggttaa aaccaaggcg attgctagca ctttgttgca
    22921 aggttgaagt cataaaagga ggtggtggag cgatttttct ttctttgctt tcaatgtcgc
    22981 ttatagcata agcttcattt ttacaagcct ctagtataag cttagcacga tctttgttgg
    23041 taatggtaag tttttctatc ttagctttgt caaactcaac cagttctgca tctaaatctt
    23101 tttgaaaaat catatctata ctaaagtatt ctagtggcac aaaagcacga atttcttttt
    23161 cacgatcgac tatgatcttt aaagctgcac tttgaacacg ccctgcgcta agccctcttt
    23221 gaattttttg tcctaataag gggctgagtt tatatcctac aatgcgatct aaaaggcgtc
    23281 tagtttgctg agcatttaca gagtgcatat ctaattttct tggatttttt aaagcatttt
    23341 ctatagcgtt tttagtgatt tcatgaaaaa caatgcgtgg taaggtgttt tcatcttttc
    23401 ctatagcttt tgcaatatga taggctatag cctctccttc tctatcctca tccgttgcaa
    23461 gataaacttc tttggcatct ttggctttgc ttttaagttc tttaactaag gcgctatgat
    23521 cacttgtgat tctatactca gggataaatt catcatcttc tattttaatc ccaaagcttg
    23581 atttaggcaa atctctaata tgtcctttag aagcgataac ttcataatct tttcccaaaa
    23641 aatttcctat ggttttagct tttgcaggag attctactat gattaaattt ttcttcattt
    23701 tgcacccttg ttaaataaaa agctgaattt agctaaaaat atttaaaatt ctacttataa
    23761 aatatatttt aatcaagcta aaatatttta aaaacaaaac tatcataaca aaataaataa
    23821 aatataattt taagtaattt taaatacaaa ccataatttt tagagtataa taaagcaaaa
    23881 aaggcaaaaa ttatgaatgg caaaacttat aaatttcatc caaatgacac gaaaatggat
    23941 aaaaaaataa ttcaaattac tgaaaagtcc ggatttaaag cggctgtgtt ttctatggcc
    24001 gctatgacta tgctaggaag cgtggtcatt tcatctgctc tgcctgctat caacagacat
    24061 tttgaagaac ttttaaccca aagtggcgct actcttgctt caagtttcac attagcccat
    24121 cttgatatac ttgttcgctt agttttaacc atccctgcta tttttgttgt cattttatct
    24181 ccatttgctg gtattttaat agataaattt ggcaaattaa aattcattct tccagctatg
    24241 gtggtttgga ctatttctgg agtaagtggc tttttcttaa atgatattta tgctatactg
    24301 acttcaagag ctatttttgg tatggcaact gcttttataa tgacaggtgc ttcggcttta
    24361 cttggagatt attatagtcg tggtggcttt aatcgcagag aaaatgcttt aagtcttcaa
    24421 ggattttttt gtgcggtagg gggtgctgtt tttatttcta ttgcaggatt tgtttcgagt
    24481 tattcttggc gttatccttt tttagtatat ggacttggaa ttttaattac cttaatggct
    24541 atcatttatc tttttgaacc tagaaaattt aaattctata atcatacaaa aatagaagca
    24601 aaaacaaatt attggcaatt tttccctatc tattttatag gtttttttat catggtagtt
    24661 tattatattt cgccaactca acttccttac tatatagaag aacatttagg attggatcct
    24721 aaatatatag gtatttcgat gtctgtatct gcactatgtt atggtttttt ctctctaagc
    24781 tatagatata ttataaaatt cttaagtatt aaaactatct atgttttaac tctttttatc
    24841 gtatcttgtt ctttttcgct gcttttttta gtagatagct ttttcacagt tttaatcgcc
    24901 ttagctttgc ttggaatggg cggaggtatt atgcttgtaa ataatacggc ttatcttttt
    24961 tcaatctgtc ctgaaaatgc tcgcgctagg gcttatggaa ttttagcaag ttgtatattt
    25021 ttaggacaat ttttaagtcc tattatctct caacccatcg ttagacaaat gggtcttgta
    25081 gatgcttttt taatatggtc aatagtaatt tttatagtgt gcattgtgtt tttattttta
    25141 aagcaaaaac ctaggataaa ttaatcttca agcattgcat ctgtttccaa aaagtttcca
    25201 atatttgatt taattttaaa aattttccaa aatatggagc ttggatatgt taaaaattaa
    25261 caatttaaat aagaaatttg ggaacaatga aattttaaaa aacatcaatc ttgaaattaa
    25321 agagggtgaa tttttaacct tagttggaga aagcggaagt ggcaaatcaa ctcttctgag
    25381 aattatagcc ggccttgaag agccaagcca aggtgaaatt ttaaacctta acaatcaaga
    25441 tataagcaaa caaaatccaa gagatagaaa ttttgctatg gtttttcaaa gctatgcctt
    25501 atatcctcac ttaagcgtga gagaaaatct tgctatgcct attaaagcaa gagctaaatt
    25561 tatccataaa cttcctctgg cttcttttta tattaagtcc tataaagagt ttaaaactca
    25621 tttggaagaa aaaattgaac aagtagcaac aaaacttaaa attacacacc ttttagataa
    25681 aaaacccaaa caactttctg gaggacaatg tcaaagagtc gctctaggta gggctattat
    25741 aagagaacct aatatatttt taatggatga acctttatca aatttggatg ctaaattacg
    25801 cattcacaca agagctgaat taagtgctat gcatagagaa ttaaataaaa cctttatata
    25861 tgtcacgcac gatcaaagcg aagctatgac tatgagcgac agaatagctt ttttggttga
    25921 tggtgagctt ttgcaagttg caagccctga tgaaatgtat aataacccca accatttaaa
    25981 agttgctcaa tttataggaa cacctacaat caatacctta tgcgttgaat taaaaagcta
    26041 tggttttgct ttaatcaata aaaacttatc taaacataaa agtctagcca taagagcaga
    26101 aaattgtttt atagatccac attcacaaat taaggccaaa atttataata ttgaaaatat
    26161 gggaaatgaa tatttaattt ataccaaact cttaaaaaat gataataatt ttattttaag
    26221 tttaaataca caagaaggta aaaagcttca actagactct gttgtaggaa ttaactttga
    26281 ttattcaaaa gcctttatct ttgatgaaga aggtaaaaga atggatatta aactttataa
    26341 tttgagtttt gcagcatgaa aaattcactt gcgacttttt gttttatttc tcctgctgtt
    26401 ttattaatgc ttttattttt gattttacct attatatggg taattatttt aagttttagt
    26461 gactatcagc ttggaaacgg cgattttcat tttgtaggat tgattaatta taaagccttg
    26521 ctaaaagatc ctgttttttt cacttcagta aaaaatactt taatttacgc ccttattgtt
    26581 ctacctttaa gcgttttggg aggtttggct ttagccttgc ttatagaatc taaaaatagt
    26641 gcaaaatcat tttatagagc tgtctttttt ctacctgtta tggcaacctt gatagccatg
    26701 agcatggttt gggaatatat tttacatccg gatataggaa tttttaataa aattcttgct
    26761 ttatttgggg ttaatacaat caattggctt tcaaataaag acacagtttt atatactctt
    26821 gctgggattg gagtatggca acaactgggc tataatatga tcttatttac agctggatta
    26881 atgagcatac ctacttcggt atatgaagca gcaaaactcg atggattaaa caaaactcaa
    26941 attttattta aaatcaccct acccttgctt ttacctattt tattttttgt tttaattata
    27001 agttctataa aagcttttca agtttttgat accgttcagg ttctaacaaa tggagggcca
    27061 aatcattcta gcgaggtttt attatttacc atttatcaag aagcttttat gttttttaga
    27121 acaaattatg cctcagctat ttctgtaata tttttattat ttattttgat tttaactctt
    27181 cttaaaatta aatttttgga taaaaaggat tgatttatgt ttagaatttt gcgccatctt
    27241 attttgggta tattgtcatt attttttatt tttccttttg tatggatggt tataactagt
    27301 tttaaacctg aaaatgaaat tttttccaat gcttttcatt ttttttccac aaaattttac
    27361 cctaattgaa aactacacaa aagcttttaa ggaaaatgac ttgttgcact tcctttttaa
    27421 tggatttttt gtatgttttg ccattctatt aatacaaatt ataatcgctt atccttgtgc
    27481 ttatgctcta tccaaataca aatttaaagg acaaaagttt ttgcttgtta ttatagtgtg
    27541 ctctttgctt attccaactc aagctatttg cgttccttgg tatattttaa tgtattattt
    27601 tggagtttta gattcatatc tagctcttat tttgcctttt agcatttcag tctttgggat
    27661 ttttttaatt aggcaattta tcaattgtat tcccaatgat ataatttatg cagcaagaat
    27721 ggatggttta aatgaattta gtatactttg caaaattata ttaccactaa ccacccctgc
    27781 tttgatttct tttggaattt tttccatagt tgctcattgg aatgattatt tttggccttt
    27841 aattgctgta agttccccac aatatttcac tccaaccctt ggagtaattt cttttaaaaa
    27901 caatgaagca ggtacggatt atggaacctt aatggccgcc tcaacaatag tagtagcccc
    27961 tcttataata ggttttttac ttgcacaaaa aagatttata caaggtattg ccaatacagg
    28021 cataaaatag cttgttaaaa cttattagaa ttacattatt ctaataagtt ttaacaattt
    28081 taaaggattt aaaatgaaaa aaatattttt caccttagct ctttttggag ctttaaattt
    28141 agcccaagca aaaacagaac ttgttgtttc ttacgcttat ccttggttta aagatttgca
    28201 cgaaaaactt aaagaagatt ttgaaaaaca aaatccagac atagaaataa gatttttagc
    28261 acccgcacaa aactatgaag aacaaagtgc tagactttta agagaaaaaa tgatcaacaa
    28321 actccctgat gtaagcttta acagctatag ctattaccta cattggtaaa taaaaatatt
    28381 cctaaagatt taacacaaaa tcttatcaat aaaaaagaat taggctttaa tgataatgct
    28441 tttaaagcaa ccactttaga aaacaaaata tatgctattc cttttgcaag ctctttacct
    28501 gttgtatatt ataatatgga tttagtcaaa caagcagaat ggaataaaga acttcctaaa
    28561 acatgggatg aactttttga tttagctcaa aaaatcaact cattaaatgg aaaaagcggg
    28621 gtgtattttg gagaaacaga tacttggctt atattggctt taagtcttga aagaggcgga
    28681 aaactcatta atgaaaaagg caaggtagat tttaacaata aagcatggca agaaactttt
    28741 aaacttttaa gtgattttca cactttagca aaaatgccag ctataaaacg ctctgaagct
    28801 ataagctcat tttatgcggg aaatttaggc atacttatac aaacctcagc agctctaact
    28861 caaacagaaa aaagcattaa ctttcctcta aaactttcta aatttccagg tgttcaatca
    28921 ggaggagaat tacccgtagg tggatccgta gttatgctaa ctaatgataa aaataaagag
    28981 gcagctttaa aatatattca ttttgtaaca ggggaagcca acgcttatgt acctcaatat
    29041 acaggttata tgactagcaa tttattagcc aatgcaaaat taaaagattt ttataataaa
    29101 aatccaaatt ataccattgc tccttctcaa atagaactca tgggaaattg gccttcattt
    29161 ccaggagata atgctctaaa agctacaaat actttatgga attatgctga aaaacttctt
    29221 atgggaacaa gtacaaatta tgaagagatt gcaaaacaag cccaagaaga aatcaatgct
    29281 ttattacctt aaaagggtat aagatgatat tttttgattt tgatggtgtt ttggttgata
    29341 gtttaaaact ttgggagcaa gcttgtcaat ttagtgcaaa gaaattgggt tttaaaggaa
    29401 tatttcctca aaaaccttat gcaaaattaa atcctgttgc tcacaaagaa attgggagaa
    29461 ttctaggttt taatccttta gaatttgaaa aaatagcgga tgagtatttt ttagaacaca
    29521 tccatacttt agtctttttt gataaaacaa aagaattatt aaaggatttg agtttagatt
    29581 ttaaactttc catattaagc gctagtaatg aaaatttagt tcgaattctc cttgaaaaag
    29641 aacaaatttt gaaatatttt accaatcttc attgtacaag ctcaatacca aaagcacaga
    29701 cgctcaaaaa atttaaacaa aatcactcta tcatgatagg tgattgtatt agcgatatag
    29761 aagctgcact agaagctgat gtttattcta taggagtgct atggggttgg caagataaaa
    29821 tcatgctcga aaaagctaat atcttagtca ataatcatgc tcaattaaaa aatgctataa
    29881 ggagttttta tgaaattcat ccatttaact gatatacact atggtgataa aaaagaagcc
    29941 atttactcaa gagaaccatc agctatgatg cgtttagcta tagaagatat caataaaaat
    30001 catagcgatg ctgattttgt atttataaca ggagatttaa ctcacaaggg gagtttagaa
    30061 tcttacactc ttttaaaaca agatttaacc aaacttaaca tgccttatta tttgatctta
    30121 ggcaatcatg atgacagagc taatgcatta gagattttta ataatttaaa gcaagatgaa
    30181 aatggtttta tacaatatga aatacaatgt aatgacaata atgttttttt agtactagac
    30241 actataaaac ttaaaagtca cggaggtgag tattgtcaaa aacgccaaat ttggctaaaa
    30301 aatgccttag agagaaacca aaacaaaaat atatttattt gcttacatca tgctcctttt
    30361 aaaactggcc ttagagctat ggattttata ggacttgatg aaaaacactc tttagaactt
    30421 tataagctat ttaactcata taaaaatata aaacacttat tttttgggca ttatcatagc
    30481 actctttgtg gaagatggaa agatatttcc ttttcttctc ttaaaggcat caaccatcag
    30541 gttaaatttg atttaaatag caatgaaata ttattagaat ttagaaatcc agaatatgct
    30601 gtcgttttac tcaataatga agttttaaat attcattaca atgattttac ttttgataaa
    30661 aatttaattt ttcatgaaaa ataaattatc caagcaggaa atttttcctg cttggataat
    30721 tttaaattac aaacctaccg cacttaaagt ttggtattta ctcatataaa tttgagcttc
    30781 aatttttctc atcgtatcaa gtgctacttg aactacaata agtacagaag taccgccaaa
    30841 atgaaaaggt acacccataa atttcaccaa aacccaaggt aaggttgcaa caagccctaa
    30901 ataaatagaa cctgataaag ttaaacgaga agctacttcg ttaagataac ttgaagttcc
    30961 ttcacctgga cgaattccag ggataaaacc accttgtttt ttcaaatttt ctgctatatc
    31021 tttagcatta aatacgatag aagcataaaa ataagcaaag aaaattacaa acaagaaagt
    31081 taaaacatga aacaaataac catttggatt taaaaagtca ttaatggctt gtagataagg
    31141 atttgtacta gtttgtaaaa tcgttgttgg aaacatcaaa atcgcactag caaaaatcgg
    31201 tggaataacc ccactaagat tgagtttaat aggaatataa ttcataatgc gtttgttttg
    31261 attttgcatt acaactttac gagaataaga aataggaatt cttctttctc caagttctac
    31321 ataaataatc acgcctatgg tgattaaaat caaagcaaaa attgcaaaag cggttaagaa
    31381 attcatctcg cctgaattga tttgccctac agttcctgaa atcgctcttg gaatacctga
    31441 aacaatacct gcaaaaatga ttaaagaaat accatttcct atacctcttt gtgtgatttg
    31501 ttcgccaagc cacattaaaa gcatagttcc tgcaagcata gaaatagcac aaagtgcgat
    31561 aaacatattt aaatcttcca ccattatagc ccctgcacca ccacgaccgt gcaagctttg
    31621 caaacctata gcaacgccta tactttgaac caaagtaatc acaatagtcg cataacggat
    31681 aatttgcata tatttttgca tactatcacg ctcttttttc atcttaccaa tatttggaaa
    31741 agttgctgca agaagctcca taataataga agcagtaata taaggcataa tacctaaaga
    31801 aataatagaa aagcgttcag ccgctccacc actaaaaaca ttaaataaac ccaaagcatt
    31861 gttttgattg ttgttaaaaa attccgcaat cacatcagca ttgacgccag gaactggcac
    31921 ataagccaga accctataag caaacaaaaa tgctaaggtg attaaaatct tattcgtcaa
    31981 tgctctattc attattttga tccggtgacg ctaatattct cgtctttgat ttttgatact
    32041 aagtcttttg cacttgcacc aattaatttg attttattca cagattttga aattttgtga
    32101 acacttttaa tgctatcaaa tgtaatttca ctaagctctt ttacagctgt gattttttca
    32161 acattgatca cataaggttt ttgaatttta gaagtaaaac ctacttttgg tagtcttctt
    32221 tgaagtggtt gttgaccccc ttcaaaacct cttttttcat tataaccttt tctagcagtt
    32281 tgacctttac cccctttagt agcagtctta cccatgccag aaccttgacc acggccaatt
    32341 cttttagttt tatgcgttga acccgctgct tttgttaaat tcatcttctt atccttttaa
    32401 cattgttaaa gctttgattg tagcacgaac cacattagct gaattatttg aacccaaaga
    32461 cttggttaag atgtctttaa tacctgcaag ttccacgata gggcgtgtag aaccacctgc
    32521 gataactcct gtaccttcac tagctggttt aagtaaaatt ctacttgcgt tatattttac
    32581 ctctacatcg tgagcgatag ttgagccttt agttttaact tcaacgatat ttttaaacgc
    32641 atcgtcaaca gctttacgga tagcatctgg aacttcctta gccttaccat aaccaacacc
    32701 tactaaacct ttgcggtttc caacgataac taaagcagta aatctaaatc ttctaccacc
    32761 tttaacaacc ttagtaactc tgccgatatc gacgattact tcttcaaatt cttctctatt
    32821 atatttttcc atcgatttac cccttatagc ctaatgccat tttctcttaa agattcagcc
    32881 aatgctgcga taacaccatg atatacataa ccatttctat caaaaacagc ttgttctatc
    32941 tttttagctt ttaaagtttt agcaaattca gcagcgattt ttttagcacc ttctttattt
    33001 gctttaacgc caagtttgcg tccatcaact gctgctaaag ttacagcttt tacatcatca
    33061 atcgcttgga tatatagagt tctgttcgat ttaaatacag aaattcttgg aaaattttca
    33121 caacctgaaa ttttcgctct aattcttttt tttcttttga ttcttaaagt tagttttctt
    33181 tttaatacat ttgctctcat attctaccct tacttcttag atgtcttacc agctttgcgg
    33241 ataatgcgtt catcagaata cttaacgcct tttcctttat atggctctgg cggtctaaat
    33301 tcacgaattt gagcagcaac ttgacctaca acttgtttat cacttccttt aactgcaata
    33361 gtatttttat ccactacaat ttcaattcct tctggaatat cataattaat aggatgagaa
    33421 aaaccaaggc ttagttctaa aactttacct tttaaagctg ctttataacc aactccattg
    33481 atttcaagag tttttgaaaa accttgagtt aaacctacaa cgatattgta agctaaagct
    33541 ctgtaagttc cccaataagc tctactttgt ctgtcttcac cttttggaga aaaaagaata
    33601 ttattatctt taatctcaac atttacattt gctttagtat caagttcttt tgctaaattt
    33661 ccttttttaa atttaagcaa atttccttct aattttactt ctactcctgc tggaatagca
    33721 atcggttgtt tacctatacg agacatattt ttccttttta tttgtctagg atatttctac
    33781 ttttttaaaa gaatggatac ccaatgccat aaaaagcaga ttttttacca aatggtacat
    33841 aaaatttcgc cgccaacacc tgctttataa gcttcatcat tagctaaaac accatgactt
    33901 gtgctaacta cgatagtacc ataaccattt ttaaaacgct tgatttcatc tttaccttta
    33961 taaacacgac gaccaggctt agaaattctt ttaagctcat tgataacact cttacctttt
    34021 tcatcgtatt ttaaaactac attgataaat ttctttttat cttcttcaat aacattaaaa
    34081 ctctcaatat agcccttagc ttgaaaaatt ccaactaaag cttctacaac tttagaatgt
    34141 aaaagcttgg ttgtttcaag ctttctcatt cctgcatttc tgatacgagt gagtgaatct
    34201 gaaataatat catttatcat attttatcct taccaacttg ctttcttaag acctggaatc
    34261 aaaccttcgt tacccatttt tcttaagcaa actctgcaaa ttccaaaatc tctataaacc
    34321 gaatgcggac gcccacaaat ttggcatctt gtataagctc taaccttaaa tttaggcttg
    34381 cgtgccgctt ttgcaatcat tgatttttta gccatcttac tttccttttg taaatggcac
    34441 accgataagt tctaataact tttgtgcctg tttatcattt tgtgctgttg taactataga
    34501 aatgttcata ccatgagttc ttaaaatttt atcatactcc acttctggga acatcaactg
    34561 ctcatcaaga ccgaagttat agtttccgcg tccatcaaaa ccatctctac ttaaacctct
    34621 aaagtctttc acccttggca aagcaataga aattaattta tcaagaaaag catacatatt
    34681 ttcttttctt aaagttacca ttacacccac aggaaaacct tcgcgaactt taaatcctgc
    34741 gactgatttt ttagctttag taatcacagc cttttgtcct gcaattaaag aaatagtatc
    34801 tgcaacattt tgcaatactt tttgatcttt agccaactca ccagcaccta cgctgataac
    34861 tactttttcg atcacaggga taagcatagg atttttaata tcaaattctt taaccaatgc
    34921 aggtttaatg ctttgattgt atttttcttt taatctcatc atcgcttact cctgaacttt
    34981 tgccacattg gaaatatcca ttggcatttc tttattgata aaaccaccat ttgggttttt
    35041 ctcgctcggc ttaatagctt ttttagcgat tttgcatcct tcaactacca ctttaagtgt
    35101 ttttggatat accgctaaaa ctttacctgt tttaccttta tcatcacctg tgataacctt
    35161 aacgctatca ccttttttga tttttaattt aaccgccatt ataatacctc cggtgctagt
    35221 gaaacgattt tcataaagcc accatatcta acttctctgc ccactggccc aaagatacga
    35281 gttccgatag gctctctttt gttatcaaga ataaccgcag cattttcatc aaaacgaatc
    35341 aaagaaccat tatctctatg aatttctttt ttagttctaa cgataaccgc ttttaccact
    35401 tgaccttttt taacttttcc atttggtaaa gcttttttaa cagatgcaac gattacatca
    35461 cctacggtag cgtatcttct tttactaccc cctaaaacct tgatacacat taattctttt
    35521 gcaccgctat tgtcagcaac tgcaagtctt gtaaaacttt gaatcattac tcaactcctg
    35581 tagctaatac agattttaag cgaaatgatt ttctttttga aagtggtctg cattctactg
    35641 caacaacagt atcaccaact ttaacttcat ttctctcatc atgaattaga tattttttaa
    35701 agcgtttaac aatttttcta tatcttggat gaaccacttt tctttcaacc aaaacacttg
    35761 cggttttttc accagcgatt ttaacaacaa cgccttgaat ttctctttta aatgccattt
    35821 tctatcctta tcttaaagcg ttaattgctg tatttattct agcaatgtct ttttttactt
    35881 ggctaatctc ttttggatta gtaagttgca ttgtttttag cttttgtttt aaagtgaata
    35941 aaagcacctt tttttctttt agcattgttg caagctcagc tgctgtttta tctttaatct
    36001 cagtatattt cattttggct ctctcttgta acaaacttag ttttaaatgg aagtttatgc
    36061 atagctaaag tcaatgcttc tcttgccatt tcttcgctta ctcctgccat ttcataaatg
    36121 atacggcctg gcttgatatt cattacccat tcttcaacag cacctttacc tttacccata
    36181 cgagtttcta aaggtttttt tgtcaaaggc ttatctggga aaactctaat ccaagttttt
    36241 ccttgtcttt taacaaaacg agttaaagcg atacgtgctg cttcgatttg gcgtgagtta
    36301 atgcgtcctg cttcagttgc ttttaatgca aattcaccaa aagtaaattc tgttccacga
    36361 ttagcataac ctctgttacg ccctttcatc attttgcgat atttagttct ttttggcatt
    36421 aacatgatta tttacccctt cttgtgcgtc ttggcttttt agctggagca ctttcttcag
    36481 ttttttcagg ttgcatacct ttgtgtaata cttcaccttt aaagatccat actttaaccc
    36541 ctatgtttcc ataagtagtt ctagcttctg caaaaccata atcgattttt gctcttaaag
    36601 tatgaagtgg aacgcgtcct tcaagatacc attctgttct tgccatttca gcaccaccta
    36661 aacgaccaga aactgaaact ttaatccctt tagcacctgc tttttgcgca ccttgaatta
    36721 cttttttcat cgctcttcta aaagcaattc ttttttcaag ttgagttgca acactttcag
    36781 cagcaagttg agctgaagct cctgcttttc tttcttcttt gatattgata tttacatctt
    36841 taccgattaa atcttgcaat tcttttctta aattatcaac atcactacct tttttaccga
    36901 tgatgatacc tggtcttgca gcaactacag taacgcgaag ttttttagca gttctttcta
    36961 ctaaaatttg actgattcct gcgtaataaa gttttctttt taagaaagct ctgattttgt
    37021 aatcttcacc gatattttct actaaatttg ctttagtcgg aaaccatctt gattcccagt
    37081 ttctattgat tcctagtctt agaccaattg gattaacttt ttgtcccatt agctttcctt
    37141 tttcgctgtt gcttttttag tgcttgttgt ttttttagct ggagcttttg ttgtagtagt
    37201 ttttttagct gctggagctt ttttagctac tgtttttttc tcttcagctt tcacttctgc
    37261 ttttgccact tctactaaaa tatgtgaagt tggttttcta atacgacttg cacttcctct
    37321 agctcttggt ctaaatcttt ttaataccgc agctgcatcc acacgacaac tttttacaat
    37381 cacttcattt gcttcaaagc cgccatttgc taccgcactt gaaattgcat ttgcgatgta
    37441 ttttgcacct ttatttggca taaattttaa actagccata gctaattctg cattcatccc
    37501 ctgaacttct ctagcaatca atcttgcttt agttggagat aatcttatga atttaattaa
    37561 tgctttactc atatcttatc ccttacttac caattttctt ttgcacagag cctttatgcc
    37621 ctttgaatgt gcgtgttgga gcaaattcac caagtttata accgatgtga ttttcagtaa
    37681 tataaaccgg aatgaagctt ttaccattat gaacattaaa tgtaagtcct atcatatcag
    37741 gagtaattgt gcttcttctt gaccaagttt taattggttt attatcatta gcctttttag
    37801 cagcgatgac ttttttcatt acatgatcat caacaaaagg accttttttt agtgatctag
    37861 ccatcttact ttccttttct tcttgaaatt attagcttat cgctagcttt tttacgacga
    37921 gttttcgcac ctttagttgg tttaccccat ggagttactg gatgacggcc tgaatttttc
    37981 ttaccttcac ccccaccgtg cgggtgatct actgggttca tagcagaacc acgagtttgt
    38041 ggacggatac ctctatggcg atttctacct gctttaccga tagttacgtt agcccattct
    38101 tcatttccaa cttcgccgat acttgccata cattcagcta aaacttgtct catttcgcca
    38161 cttgcaagtc ttaaaataac atatttttct tctttaccca taagttgtgc ataagcaccc
    38221 gcagaacgga tcatttgacc gcctttacct ggttttaact caacattatg aacaatagta
    38281 cccacaggaa tatttttaag tttcattgca ttacctggtt taatatcaag tccgctttca
    38341 gcagctgcaa cgatatctcc aacgcttaat ccacgtggtt gaagaatata tcttttttcc
    38401 ccatctttat aagcaatcaa agcaattcta caatttctat atggatcata ctcgatcgct
    38461 tctactttgc cttctatacc gaatttacga cgtttaaaat caataattct gtaaagtttt
    38521 ttagcacccg cttctttatg acgacttgta attcttccat agctgttacg acccgcgtgt
    38581 gctggaagtt taacaagtag tgagcgtaca cttggtttag ctgtaatatc ttcagaactt
    38641 aaacctgtga tatatcttct acttggagta tatggtttat aagttttaat tgccatctta
    38701 agcctccgta ttttctaagc taacaccttc aggtagctta acatagaatt ttttgtaatc
    38761 gtttctttga cctaaacgac ctctaaaacg cttaactttt ccatccattc ttaatgaatt
    38821 gatgcttttt ggagttacac caaaatactc ttttaaaacc gcttttaagc ctgttttagt
    38881 catctttggt gaagtttgaa taactacgac accttgctct tgcaaattca aacttttttc
    38941 tgtgtaaagt atagtcttta tatcagtaat atctgccata attatccctc ttttgtaata
    39001 gattctaacg ctgatttttc tatgataaca gcattaaata cagatactaa ataagcattt
    39061 acttcgctta catcaactac atagcaattt gctaaatttc tgtaagctaa aagtgttttt
    39121 tcatctagta aatctttaac gattaaagca tctttgacgc caagtttttt aatcacagcg
    39181 tttgcatctt ttgttttacc actttcaata gccaaagaat cagcagtaaa taacgcacct
    39241 ttagctgctt tatctgctaa agctctttca agcgccaatc ttttttgttt tttatttact
    39301 ttttggaagt agtttctttc atttgttgga ccaaaagcaa ccgcaccgcc tacccaaacg
    39361 ttagttcttg ttgaacccgc tctagcaccg ccacgacctt tttgtctcca aggtttttta
    39421 ccaccaccac ttacatcact tctaccttta gtatgagctg tatttgctct taaacttgca
    39481 aggtaagatt ttacatacaa gtaaagattg tgtggattta cttccgcata ttttgaaggt
    39541 aaatcaagtt cacctgcttt ttctaattta tcatttaaaa caactacttt actcattttg
    39601 caatccttat tttacccata gcaccattat aacctggtac tgcaccttta actactaaaa
    39661 ttttgttttc agcatcataa gatacaactt cgtttttaac ggttacttta gtatttccat
    39721 aatgtcctgc cattttcata cctggttgaa cacgacctgg ccattctcta ttaccaatag
    39781 atccgtggcg tctgtgaaat ctagaaccgt gacttgctgg accccctgcg aagttatgtc
    39841 ttttcataac accgctataa cctctacctt tagtgttaaa gcttactttt aaaatttttg
    39901 cttcatttaa tggagtttca tctaaatctc ctgcttcagt gtttgctact tctaaagtcg
    39961 caaatctatt gtattctgca gaaagattat actttttttg ttgtcctgcg acacatttat
    40021 tacttgcttt accttttgga tatgctacta aagcctttcc gccttcaact tcacatactt
    40081 ttgcatttac aactcttagt aaagttacag cgatacttgg attagtaatt gttctgctca
    40141 ttccgatttt ttctacaata tattccatat cttatcctta cttacccata gctcttactt
    40201 caacgcttac ttctggcgct aaatcaagct tagttaaaga atcaactgta tctggagtcg
    40261 ctgctactat atctagcata cgcgcgtgaa ttcttatttc aaactgctca cgagaatctt
    40321 tgttaatgtg tggagatttt aaaactgtat agcgtttgat tttagtaggc attggtatcg
    40381 gacctctgat atccgcacct gttcttttaa cagcttctac gattgctgca actgttctgt
    40441 ctagtactcg atggtcataa gcttttagct taagcctaat tctttccata atatttcctt
    40501 taaaaagaac tcgttagtta aaaactaacc aatttataaa aattgaaatg agagtatata
    40561 aaatcttgtt ttcaaagtca aggaatttga tgaaattttt ctattatttt ccttttaaaa
    40621 aggataaaaa tagaattttt agaatttaaa aattatcatt attttttaaa tttttgtata
    40681 taatggtcaa tatcttattt cattaaattt taaaaaatct cttaattttt catattctcc
    40741 attttccaaa tagcgatgtt ttcctgcctt caacatacca agatctaaag ccccaaaagc
    40801 aacacgctta agatccatga cttcaagatc aaaatgtcca aaaaagcgtc taagctctct
    40861 atttttacct tcatttataa ccactctaag cttagtataa cctccacttg atccaaaaat
    40921 ttcaaagtct ataaaaggag caaaactcat agaggtaatt ttagtttttg catgtgcgcc
    40981 ttttttttca tttttaatct caagtccatt ttgcatggct tcgatgactt gtttgctcac
    41041 cgtgccttta actttaaggt agtattctct ttctaaatcg ctatgcatta aagcatcggc
    41101 aatcacagga gaatctgtaa gcaaaagcaa gccctcgctt gcataatcca atctacctac
    41161 gctaagccaa gtactaaatt gtcttggcaa ggtatcgtat atagtttttc ttccacgatc
    41221 gtctttttta ctgacaattt cacctttttg tttatggtag attatcacgc taaattgcgt
    41281 tcttttttgc actcttttac ctttaacaaa aactttatca tcaaatttaa cttcatcgct
    41341 taaaagggca attttgttgt ttatttttac taagccttgt ttgataagtt catcagcttc
    41401 acggcgtgaa taacgagtgt tatgggatat aaatttatta attctcattt gatcttcctt
    41461 aaaaagggcg tttttgccct tttttacatt acaaaaatag ttggaactat ggttgggtat
    41521 tttttaatct ttctaaagat atgctttctt aagacttggc ggatttggtt ttctaaaaat
    41581 cttggatcat tgagtacttc atctttaaca ttgatgaaaa attgccctaa aacttcagcc
    41641 atatctttac taaaagcatg atcgtgtttg tcagctacta acccatagct aaacactctt
    41701 ggcttgttga tcagtgtttt tgtagttttg tcaatttgtg cgataataac tactatacca
    41761 ctatctgcaa gtttttgacg atctataact acatcatcgg caatttgttt gttgatttga
    41821 ttatccacaa aaactttacc tgtttttacg gtttttatgc gtttgacata tttttggcaa
    41881 agttctactt gatcgccatc actcataaga tagatatttc tttcggggat accgcatttc
    41941 atcgctgttt ctttgtgttt ggtgatatga ttgtattctc catgaaccgg taagaaaaat
    42001 ttaggtttag taagggttag cataagtttt tgctcttcta tgctagcgtg tccgcttaca
    42061 tgaatttcac taaattcttg atacgctact ttagctcctg cttttaaaag atagtcaagc
    42121 accgcagaaa cacttgcttc atttcctggt atggctttag ctgaaatgat tacttgatct
    42181 gtaggcttaa tctttataaa tttatgctca tcagttgcca ttctataaag cgcactcatg
    42241 gtttcgcctt gacttcctgt agttacaata agcacttcat tgtctttata tttgcttacc
    42301 tcatcagcat cgatgaaaat ttttctatca agtttaatat agcctaattc catagtagta
    42361 taaagatttc tttccataga acgaccaata acacaaactt ttctgccgta ttttaaacca
    42421 taagtgatag cctgataaac acggtggata ttagaactaa aagtactcat gatcacccta
    42481 cccttagtac gcgaaaaaat ttgatcaaaa gttggcccta cagagctttc actttttgta
    42541 taaccttctt tataagaatt tgtactatca cttaaaagac ataaaactcc ttcttctcca
    42601 taatgtgcta aacgtcctaa atctgttgga tagccatcaa ttggagtttg atcgatttta
    42661 aaatcacctg tgtggataat cgttcctgct tttgttttga tcgcaagtgc tgaagcatca
    42721 atgatagaat gcgtgatatg aatccattct atatcgaatt cgcctatctc ataaacacgg
    42781 cgtttttcta cagggcgaaa ccatttgcgt tctgctttta agccatgttc ttcaaatttg
    42841 tttgaaatca ttcctaaagc taaaggtgta gcgtagatag gaaattggaa ttctttaaag
    42901 aaataaggca ccgcaccgat atgatcttcg tgtgcatgag tgatcactat accacgaatt
    42961 ttatctttaa tttttcttac atagtcaaaa tcagggatga taatatctac cccatgcata
    43021 gttccatcag gaaaactcat acctatatct actataattg catctttatt ggtttcaaaa
    43081 acactgatat ttccaccaat ttctcctaag ccccctaaag gagtgatgcg gattttatgt
    43141 tcgctagaat tgttatattt taaagggtgt aagcggtttt catgtgaaac acggttagct
    43201 tctatacatt ctgcaagagc gatttgccaa tcttcattac ctgtgagttt tgaaggaaga
    43261 ttgcgatttt ttttcttttt tttctcagtt ttattttctg agttttcaga aatttccttg
    43321 ttggaatttt gatcgatttt tggagtatcg ttttcatttt gtaaagaatc ggctaatttt
    43381 tttctgcgat ttttatattt atagcgttta ttgttttttg aatttgagtt cggattttgt
    43441 tcgtttttat ttatctcttt gttttcgtcc atattcatcc tttaatttgt cataaatttt
    43501 aaggtatgaa tcaacgcaaa tttcatgtgg tctgatgttt tcttttaagc caagagtgct
    43561 taaaacttct aaaacttttg ctttatatgt ttttaaattt cctaagagtt gttttctagg
    43621 agctttaaaa cagtctttta gaaaattttt gaaattttct atttcgcaaa gttcatcaaa
    43681 atccttagtt ttaatcaaac tcatcaccgc tgacataact tttggcggtg gattaaaaca
    43741 ttgtggatca acatcaaaaa gcatttttct ttcgcaaatc attgcactta aaacacctaa
    43801 ggaagaaaac tcactatttc cttctttagc gcagaatttt tcagccattt ctctttgcac
    43861 cattacaata agccctagac aatttttatc ttctaaagct tttaatataa tgtgacttgc
    43921 aacataataa ggcaaatttg caaccaaaaa atatggtttt tcatcaagac taggattaaa
    43981 agcttcgctt gcgtcttgat ggatcaagtt aaattttcca cattcaagtt ctttttgaaa
    44041 tttctttttt aaaataggta tgagatcatt atcgatttca taagctttta cttgagaaat
    44101 ttttaaaagt tcttgcgtta aatcacctaa gccaggccca atctcaataa tattgttcat
    44161 ctctttgggt atggcttgga tgatttttgc taatacgctt ttatcgatta aaaaattttg
    44221 tccgtattgt ttttttgctt taaccataag aaataatttt atctaaaaat tcttaattaa
    44281 gtctttttag gtagaattat ttttgtaaaa tttcataagg atcaaaatga ttgtttgtgc
    44341 gggtggaaat gaaaattttt cttttgcaaa agctataggt ataggtttgg ttgaatcagc
    44401 ttttcatttg ggtcaacttt gcttcaaaga aaaaccatca aaacttatat ttataggaac
    44461 ttgtgggctt tacgataagg gtaaaatttt agaaatttac aaaagttcac acgcttttaa
    44521 tgtagaattt tctaaaattt cacatgcttt ttatactcct gcaaaatatg aaatttgttt
    44581 agaaaaagaa aatgtttctc gtgaaacaat caagatcaat tcttcaaatt atatttgtca
    44641 aaattcaaaa gcagcaaaag aattttcgaa attaggtttt tttgcagaaa atatggaagc
    44701 cttttctgtt ttaagtgtag ctaaaaattt aaatattgat gcagagtgta ttttgtgtgc
    44761 aacaaatttt tgcaatgaaa acgctcacga agattttata aaaaatcatc aaaaggcaaa
    44821 agaaaaatta gaagaatact taaaaaaata tcattatatt taaaaattca aaaaggaaaa
    44881 taattttgaa agagcttgtt aatattttag attttttacc tgaagaatta ggagaaaaaa
    44941 tcaaaccgat gtttcgcgtg aaacaaattt atcaatggat ttatcaaaaa tatgccaata
    45001 atttttccga tatgtcaagt ttaccaaaat atctacgttt agaacttgcg caaaattttc
    45061 atttttcccc tgtaaaatgt gttaaaaatg agcaaagtaa agatggaagt ataaaatatc
    45121 tttttgaact cgttgatggt ttaagggtag aaagtgtgct tttgcctatg aaagaagaaa
    45181 aaatagacgc agaaggcaaa agaatttctc atgcaagata cactatctgt gtttcttctc
    45241 aagtgggttg taaaagtgga tgtagttttt gtcttactgc caagggtggt ttgaaaagaa
    45301 atttaagtgc aggggagata gtcggacaaa ttttatggat caaaaaacaa aataatatcc
    45361 cttatgaacg ccgtgtaaat atagtatata tgggtatggg cgagcctttg gataatctta
    45421 aaaatgtttc taaagcggta aaaattttag cacaaaatga tggacttgcc ataagtcctc
    45481 gccgtcaaac catcagcact agcggtttgg caaaacaaat caaagaatta ggtcaaatga
    45541 atttaggtgt tttacttgct atatcattgc atgcggttaa tgatgggctt cgaaccgaac
    45601 ttatgcctat caataaagct tataatatcg ctgcgattat ggatgcggtg cgtgaatttc
    45661 ctatagatca aagaaaaaga gtgatgtttg aatatctttt gatcgatggt atcaatgata
    45721 agcttgaaca cgctaaagaa ttagtcaagc ttttaaatgg tattaaagcc aaagtgaatt
    45781 taatactctt taatccacat gaaggaagtt tatataaacg ccctagttta gaaaatgcga
    45841 ttaaatttca agatttactc agtagtaaag gtgtaacttg cactataaga gaaagtaaag
    45901 ggcttgatat ctcagctgct tgtggacagc ttaaagaaag ggcaaaagaa caatgacaat
    45961 gctagatatt tttgaaatcg tttttataac agctgttgta attataggtt tttttggtat
    46021 aatttatttt ttaaataaag aaaggtgaaa taatgttaaa tacaacaaaa ttactcgaaa
    46081 ataaattatt tcaagaaaga tatattaaac caaatataga ttggtatttt tcttacctaa
    46141 acggaaaacg aggaatgtca agaatttata aaacacccta tgcaatttta atgaaaaaat
    46201 tttttttaca aaaatacttc gaaaagcgta ttaaaaaaag aataatagat ataccttatc
    46261 ttgagctcgt tttaactaca aaatgcacca tgcgttgtca atcttgcaac aatttaatgc
    46321 aatacttctc tcaaaataat caatatactt gcacatttga agggataaaa aaatcacttg
    46381 aaattttact ttccaaagtg gatagtattg caagaattag aattataggt ggagaaccat
    46441 tattatttaa agatttacct aaacttattg actacttaaa ttgtcaaaaa aaaattttga
    46501 catttagttt agtaacaaat ggtactattg attttaaaga tgaattaatt aataaactca
    46561 aacattctaa aaaagttagg aaaatcacta tttcaaatta taaaaattca ccaaatttaa
    46621 aaatcccatt aaaacaagaa gatataatca aaaaacttat aaaaaataaa atcccatact
    46681 ctctagactc caataaagaa aattctacat ggtttgatcc agaaaaaatt tacaaaagag
    46741 ggcgcaacaa agaagagatt ataaaaaatt actattattg caaaatgccc tgtgtaagtt
    46801 taatgacaag cgaaggagaa aatctaaaag gtaaagaatt ggcttcaaat ggagctattt
    46861 tcgtatgtcc agtttcaagt tctttaagtc gtcttaaagg tttaaatgaa tttgaaggcg
    46921 attttctaaa tttagatgat aatatagaaa aattttttga attttatatt aaagatttct
    46981 ataaagcttg tgattattgt agagatttta gcaaacctta taaaagaatt cctattgcca
    47041 ttcaaaccaa taagacttta aaacttgaaa aagaagatta aaaatatatt tcaatcttta
    47101 atattagtat atttgctttt gttcataata aactagcaac taaaaacaaa tatttttaaa
    47161 tttttaaaaa acaaaagaag caataaaaat ggatggtgtc aagggggaga cttgaactcc
    47221 cgacctccgg cttatgagac cagcgctcta accagctgag ctaccctgac taaaaataaa
    47281 aatataatta tactactttt tactaaaaat tttctgattt tttaaaaaaa taattttatt
    47341 ttcaatattt aaaaaatttc tttattttta aagcttttat agatataatg aacactttat
    47401 ttcatagaca ggtgtccgag cggttgaagg agcacgcctg gaacgcgtgt aaagtgcaag
    47461 ctttcgaggg ttcgaatccc ttcctgtctg ccattcttat ttttaatatt taaaatatta
    47521 ttgttttgtc aa
//
LOCUS       DAEDTT010000002        42822 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.002, whole genome shotgun sequence.
ACCESSION   DAEDTT010000002 DAEDTT010000000
VERSION     DAEDTT010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 42822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42822
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.002"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..732
                     /locus_tag="KLC54_000068"
     CDS             <1..732
                     /locus_tag="KLC54_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HBD9176489.1"
                     /translation="LVALVGLFLGACSDSKNKESNASVELKVGTAPNYKPFNYKENSK
                     LTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATDERRQSVDF
                     TKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQVQSNKDLN
                     IAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDKNKQKDIIE
                     IFNKGIDEAKTDGFYDTLIKKYELE"
     gene            complement(756..1394)
                     /locus_tag="KLC54_000069"
     CDS             complement(756..1394)
                     /locus_tag="KLC54_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HBD9176490.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKLDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGVYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(1391..2380)
                     /locus_tag="KLC54_000070"
     CDS             complement(1391..2380)
                     /locus_tag="KLC54_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9176491.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENIAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNKGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDNLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            complement(2384..3163)
                     /locus_tag="KLC54_000071"
     CDS             complement(2384..3163)
                     /locus_tag="KLC54_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD9176492.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAISNV
                     NLNELIASNAMLGGSLMGAIFKLVLPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(3164..4003)
                     /locus_tag="KLC54_000072"
     CDS             complement(3164..4003)
                     /locus_tag="KLC54_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HBD9176493.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFILAPSKICKFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYNF
                     KVL"
     gene            complement(4000..4809)
                     /locus_tag="KLC54_000073"
     CDS             complement(4000..4809)
                     /locus_tag="KLC54_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HBD9176494.1"
                     /translation="MMSKVILVVLDGLNCKSASINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSGIINNKLSFSKQTSIFDLCKEQGLKAGSAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGHFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDAGHKFGSHSIEYANKTKKVDVLISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSICEILGLKHDKRYNDEILKAKK"
     gene            complement(4806..6131)
                     /locus_tag="KLC54_000074"
     CDS             complement(4806..6131)
                     /locus_tag="KLC54_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HBD9176495.1"
                     /translation="MKKVILTSAMLCSVLFGIQEHEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANITREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDAMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGADFDTESIQLINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPNL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVVENDNNFPYSSSREPNKSDDNEFILLEVKDFLKSK"
     gene            complement(6142..7188)
                     /locus_tag="KLC54_000075"
     CDS             complement(6142..7188)
                     /locus_tag="KLC54_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HBD9176496.1"
                     /translation="MSKKFFLSLGLVVLLFSNSQAIDENLIKAVQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYGIEHSDTDMSSAQEIAKFKAEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALSGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            7305..8288
                     /gene="corA"
                     /locus_tag="KLC54_000076"
     CDS             7305..8288
                     /gene="corA"
                     /locus_tag="KLC54_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HBD9176497.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            8309..8851
                     /gene="mog"
                     /locus_tag="KLC54_000077"
     CDS             8309..8851
                     /gene="mog"
                     /locus_tag="KLC54_000077"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HBD9176498.1"
                     /translation="MDTINIGVLTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAVCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(8848..9033)
                     /locus_tag="KLC54_000078"
     CDS             complement(8848..9033)
                     /locus_tag="KLC54_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HBD9176499.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLVRANKF"
     gene            9160..10347
                     /locus_tag="KLC54_000079"
     CDS             9160..10347
                     /locus_tag="KLC54_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HBD9176500.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIINIAWIGFGFLYLKELLISSNTRFENTLFLLSFLIITS
                     ILNLPLSIYKSFIKDKAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMKKLDDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGAITMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFSFLISPMLNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYTFFYLSHPSISDRIK
                     ALS"
     gene            10344..11159
                     /locus_tag="KLC54_000080"
     CDS             10344..11159
                     /locus_tag="KLC54_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HBD9176501.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIQI
                     DHEPYFELIKRFKSGEPFEYIFEKVDFWGLEFKIKKGVLIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIVLAKELGLKITACDINPKALELALENAKLHKVDHLIDFKL
                     CNFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQDYNRAFIAKFTNMRYDKK"
     gene            11172..11642
                     /locus_tag="KLC54_000081"
     CDS             11172..11642
                     /locus_tag="KLC54_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HBD9176502.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFQIKFSKFMLSLLILILSLIFV
                     FYFTNTIIELQNLGENATKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            11680..12429
                     /gene="flaC"
                     /locus_tag="KLC54_000082"
     CDS             11680..12429
                     /gene="flaC"
                     /locus_tag="KLC54_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HBD9176503.1"
                     /translation="MMISDATMMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATGGLSID
                     NQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            12465..13097
                     /locus_tag="KLC54_000083"
     CDS             12465..13097
                     /locus_tag="KLC54_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HBD9176504.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASTIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKESIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(13110..16712)
                     /gene="dnaE"
                     /locus_tag="KLC54_000084"
     CDS             complement(13110..16712)
                     /gene="dnaE"
                     /locus_tag="KLC54_000084"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HBD9176505.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGMEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTREYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGPEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGAKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            16931..17137
                     /locus_tag="KLC54_000085"
                     /pseudo
     CDS             16931..17137
                     /locus_tag="KLC54_000085"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SelT/SelW/SelH family protein"
     gene            complement(17150..17479)
                     /locus_tag="KLC54_000086"
     CDS             complement(17150..17479)
                     /locus_tag="KLC54_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HBD9176506.1"
                     /translation="MKLYGIKNCNSVKKAMDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(17476..18816)
                     /locus_tag="KLC54_000087"
     CDS             complement(17476..18816)
                     /locus_tag="KLC54_000087"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HBD9176507.1"
                     /translation="MWTKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVVK
                     IGRIAGQFAKPRSSDFEELNGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAT
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLRGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            complement(18840..19253)
                     /gene="uraH"
                     /locus_tag="KLC54_000088"
     CDS             complement(18840..19253)
                     /gene="uraH"
                     /locus_tag="KLC54_000088"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HBD9176508.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
     gene            complement(19386..19742)
                     /gene="rplS"
                     /locus_tag="KLC54_000089"
     CDS             complement(19386..19742)
                     /gene="rplS"
                     /locus_tag="KLC54_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HBD9176509.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKMGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
     gene            complement(19753..20457)
                     /gene="trmD"
                     /locus_tag="KLC54_000090"
     CDS             complement(19753..20457)
                     /gene="trmD"
                     /locus_tag="KLC54_000090"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HBD9176510.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLRSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEVFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLEEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            complement(20454..20993)
                     /gene="rimM"
                     /locus_tag="KLC54_000091"
     CDS             complement(20454..20993)
                     /gene="rimM"
                     /locus_tag="KLC54_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HBD9176511.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNASNSTVLFENYEDIEKAKELINLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVIDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNID
                     IEKRQIFCTQDAFLILENS"
     gene            complement(20986..21228)
                     /locus_tag="KLC54_000092"
     CDS             complement(20986..21228)
                     /locus_tag="KLC54_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HBD9176512.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTVISAYKSKDASSYRVTVKALE"
     gene            complement(21231..21458)
                     /gene="rpsP"
                     /locus_tag="KLC54_000093"
     CDS             complement(21231..21458)
                     /gene="rpsP"
                     /locus_tag="KLC54_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HBD9176513.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            complement(21523..22860)
                     /gene="ffh"
                     /locus_tag="KLC54_000094"
     CDS             complement(21523..22860)
                     /gene="ffh"
                     /locus_tag="KLC54_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HBD9176514.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDVKQNGIGQKQFLNAIKVNLENILSVNGKNQGFVFASKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKAVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEALNISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLGGMANAVKDIDLDNSKEIIRIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            complement(22928..23680)
                     /locus_tag="KLC54_000095"
     CDS             complement(22928..23680)
                     /locus_tag="KLC54_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HBD9176515.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKARFNVIKTKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKAKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFDYYFKAELDNSFAKVGFEIKNLDF"
     gene            complement(23661..24818)
                     /gene="waaA"
                     /locus_tag="KLC54_000096"
     CDS             complement(23661..24818)
                     /gene="waaA"
                     /locus_tag="KLC54_000096"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HBD9176516.1"
                     /translation="MIFFYYFLTWTAFLFCAVFILLLSFLKSKYKTSLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKTLVLKFDSRITTITQTGFEYAKEFCKKVNYLAFENFL
                     PFWFKPCKVLVIFEAEYWLMLVFMAHIYKTKIILLNARISDKSYHSYQRFSFFYKKIF
                     SYIDEVFAQSELDKVRLESLGAKNVKIFKNIKANLEIKNNKIYAKPKEKLIIFASTHK
                     DEEELLLDHFKLEENEKLIIAPRHPERFKEVENLLLNKGLEFEKFSSLKDENKKFAKK
                     ILLLDALGELVNFYAISDVVVLGGSFIEGIGGHNPIEVAYFDNVLISGKFIHNQKALF
                     EEVENVYFCENLKDLNDKIHYLNLKVKISKKENLDLIIQTIQKGIDARKSL"
     gene            complement(24815..25531)
                     /locus_tag="KLC54_000097"
     CDS             complement(24815..25531)
                     /locus_tag="KLC54_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HBD9176517.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINRTLKDAELKIGKINT
                     DLEKIDEEIKDIENQKVQNNAHISEFSAKIKELSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVGEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            complement(25541..26266)
                     /locus_tag="KLC54_000098"
     CDS             complement(25541..26266)
                     /locus_tag="KLC54_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HBD9176518.1"
                     /translation="MKLSEIYNFLDQLSPFDIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMICKNISLISMHTNYDL
                     SHLNTYFTEEILGFKISFKDEFLIYVENSMSFEALCDWVKKKLNLQILRVSDCGKKDI
                     KRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCL
                     AKDLKNLPLQAIITVSKNPFQYF"
     gene            complement(26253..27116)
                     /gene="glyQ"
                     /locus_tag="KLC54_000099"
     CDS             complement(26253..27116)
                     /gene="glyQ"
                     /locus_tag="KLC54_000099"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HBD9176519.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNETE"
     gene            complement(27128..27664)
                     /locus_tag="KLC54_000100"
     CDS             complement(27128..27664)
                     /locus_tag="KLC54_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HBD9176520.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            complement(27674..28168)
                     /gene="purE"
                     /locus_tag="KLC54_000101"
     CDS             complement(27674..28168)
                     /gene="purE"
                     /locus_tag="KLC54_000101"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HBD9176521.1"
                     /translation="MNFVSILMGSKSDYETMKEAAKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGAKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMPGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            complement(28169..29422)
                     /locus_tag="KLC54_000102"
     CDS             complement(28169..29422)
                     /locus_tag="KLC54_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HBD9176522.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHERGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHVFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     EGKFESSKYEKEIATLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGS
                     FFKCKGKIVLNTPYEILAPLGDVIQTCDNELGKIYQKEDRYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            complement(29419..30114)
                     /locus_tag="KLC54_000103"
     CDS             complement(29419..30114)
                     /locus_tag="KLC54_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HBD9176523.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLNEKFPNVESFSEALELNNQAKKSSKQIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            30317..31747
                     /gene="glnA"
                     /locus_tag="KLC54_000104"
     CDS             30317..31747
                     /gene="glnA"
                     /locus_tag="KLC54_000104"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HBD9176524.1"
                     /translation="MGKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAI
                     NEETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYK
                     GQMYEKCPRSIAKKAMEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTE
                     EGEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHH
                     EVAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHV
                     HMSLWKDGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFE
                     APCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNK
                     TIPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQ
                     HLKFETQVWPVEARPTAYEFKTCYSC"
     gene            complement(31813..32604)
                     /gene="flgG"
                     /locus_tag="KLC54_000105"
     CDS             complement(31813..32604)
                     /gene="flgG"
                     /locus_tag="KLC54_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HBD9176525.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(32633..33445)
                     /locus_tag="KLC54_000106"
     CDS             complement(32633..33445)
                     /locus_tag="KLC54_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HBD9176526.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLENSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            complement(33600..34712)
                     /gene="ftsZ"
                     /locus_tag="KLC54_000107"
     CDS             complement(33600..34712)
                     /gene="ftsZ"
                     /locus_tag="KLC54_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HBD9176527.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKFTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            complement(34728..36116)
                     /gene="ftsA"
                     /locus_tag="KLC54_000108"
     CDS             complement(34728..36116)
                     /gene="ftsA"
                     /locus_tag="KLC54_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HBD9176528.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDKVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDAESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            complement(36113..37603)
                     /locus_tag="KLC54_000109"
     CDS             complement(36113..37603)
                     /locus_tag="KLC54_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HBD9176529.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENEILQKLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLSVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AKDYALIQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDVLRPAP
                     YNNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSLVNFKGDDIG
                     FVSRDSSRESVKLSDKILNDSEFAYFLMNVFNTDQNSSYVIINDNKAILYKINKQKLD
                     MNSDKFEQYKTMLEQNLRNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            37762..38700
                     /gene="rsmH"
                     /locus_tag="KLC54_000110"
     CDS             37762..38700
                     /gene="rsmH"
                     /locus_tag="KLC54_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HBD9176530.1"
                     /translation="MILEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKN
                     HPDLKFIACDQDQQALEFSKKRLKDFHNRITFIQSNFSEVLEKISYKEELRGILADIG
                     VSSFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAH
                     FIAEKICLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKD
                     FLGHLENLKPKNCILAIISFHSLEDRIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQ
                     IITKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            38700..39638
                     /locus_tag="KLC54_000111"
     CDS             38700..39638
                     /locus_tag="KLC54_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176531.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLEELDEEYESKHTKKSNIYLKEDLINVKLEEKQSLAKKFFSKMKER
                     KKEENKKTKKIFSFGRKKINKIKNIQTKPKIQTKNDQNPIQDKKEKKESIKSIEKIQK
                     TEPKIQNSQTIEKRPDIKKQPDIKQSLENLQKKITPQENKQELPKPSNQAQEKQQNDE
                     DAQKAKNVLLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQIYYLSRE
                     IATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(39626..40117)
                     /locus_tag="KLC54_000112"
     CDS             complement(39626..40117)
                     /locus_tag="KLC54_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176532.1"
                     /translation="MKKFKEFSLRFLFKVSEQPVLVKDLLEANALFNDGMLVDPSKLN
                     FNFKILNSYIYFGVFCAVVLLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFK
                     VYTRKIISKKIIQKAWALHFPYFAYEKYSIMAGEIYKEALKEEIPKANLEQYVLDKII
                     HSK"
     gene            complement(40188..41375)
                     /locus_tag="KLC54_000113"
     CDS             complement(40188..41375)
                     /locus_tag="KLC54_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HBD9176533.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKVVKASGLVEKIGEQNSKVILKNV
                     LNNESFERELMINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANVAIFDTAFHRTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAFVSSRAASLLEKDKSELNVISAHLGNGASVCAIEKG
                     KSVDTSMGFTPLEGLVMGTRCGDLDPAILPFISHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFELNKQRISGERMINHANSKVKVLVIPTDEELEIARITEEL
                     ISN"
     gene            complement(41389..>42822)
                     /gene="pta"
                     /locus_tag="KLC54_000114"
     CDS             complement(41389..>42822)
                     /gene="pta"
                     /locus_tag="KLC54_000114"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HBD9176534.1"
                     /translation="KNYSKIYKNIAIYCPVIYIHRVPVLQGWLEEFNINQTVKSAYGF
                     TFREAMEEFSKDPHNFFNVILEEYEELKRKYDFVLVNSFCEFGILDGFDLSIKLAKNL
                     NTPIAAIINDEDKLIAQKYFDHALDGRNYVLINENFNFEEVQKLEEYDFITPHRFKYE
                     LIKQSVKNKKTVVLPESNDERILKAAEILLKSKVVDLILLGDEEKIKQDATRLSLDLS
                     TIQIMNPLNSEYNQEFTSILYEARKSKGMSLEEAKMLVQDKTYFGTLLIHTGKADAMV
                     SGASTTTAETIRPALQLIKTKEGISSVSGIFFMGLEDQVLAFADCAVNPSPTAEQLAT
                     SAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESVDLVKEALKIAKEKYPELNIDGPMQ
                     FDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAANICYKAVQRTANALAIGPILQGLK
                     KPVNDLSRGCLVDDIVDTVILSAIQAQ"
BASE COUNT        14689 a         7547 c         5501 g        15085 t
ORIGIN      
        1 ctagttgctt tagttggttt atttttaggt gcttgtagtg attctaaaaa taaagaatca
       61 aatgcaagtg tagaattaaa ggttggaact gctccaaatt ataaaccttt taattataaa
      121 gaaaactcaa aacttacagg ttttgatact gatttggttg aagagattgc caaaaaaaat
      181 ggtattaaaa ttgtttgggt tgaaaccaat ttcgatggat tgattcctgc tttaaaagct
      241 ggcaaaatcg atatgattgc ctcagctatg agcgcaactg atgaaagaag acaaagtgtt
      301 gattttacga aaccttacta tatgagtaaa aatctttatc ttaagctaaa aaacaacgac
      361 tctcttcaaa caaagaatga tttagaaggt aaaaaaatag gagttcaact aggaacttta
      421 caagaaaata ctgcaaaagc tatcaaaaat gcacaagtac aaagcaataa agatttaaac
      481 atagctgttt tagcactaaa aaacaacaaa atcgatgcta ttgtagctga tcaagatact
      541 gctaaaggtt ttttagctga aaatccagaa ttggtaagtt tctaccaaga aacagatgga
      601 ggagaaggct ttagttttgc ttttgataaa aataaacaaa aagatattat tgaaatattt
      661 aacaaaggca tagatgaagc aaaaactgat ggattttatg atactttaat taaaaaatat
      721 gaattagaat aagcgtgaat tttcacgctt atagcttaaa aagttaaaat ttcatatttt
      781 ctctcttttg caatttttaa aattttttca tcaccattac atacaaaggc tttgctaaca
      841 gactctagta aaggtaaatc attgatagaa tcactaaaaa aataagaatc tttcatccat
      901 ttttcataat ctttacccaa atactcttta agtcttaaaa ccttaccttc tttaaagcta
      961 taaaccccgt aagcttttcc actaaattta tcgcccacac gctcgcattt tatggctatg
     1021 ctttctctca ctcccaaaaa agaggcgatt tttctaacta aaaattcagc cgtagctgaa
     1081 attataatac acctttgatc ttgatatttg attataagtt ctttagcttt ttcataaggt
     1141 tttatataaa tttttataaa ttcatctact aaagatgaaa ttctatcttc atttttaccc
     1201 ttaacacttt gaagaaaaaa agtcataaat tcatccatat caagcttttt ttcttgatat
     1261 tgtttttgat aaaaaacgat tttttctaaa tattcttgag gtaaaaaacc tttttcaaca
     1321 caaaatttaa gccaaagttt agcactatcg ccttgtatta aagtatcatc taaatcaaat
     1381 aaaacaagct tcattttaac tcttttgcta aagaaagatt gaattttaaa gcgattttat
     1441 cacctgcttc ataagtacta tgagtgctaa aatttaaagt atctacctta aattcaattt
     1501 cttgcactct aaccctatag cgtatgatat tgcctagtaa tgatttttct ttgatcttag
     1561 cctctaagcc ttcgttagaa atttctatgg tttcaggacg caaggctata tcttttttaa
     1621 aatcgtgttt taaacccaag ttatcaagct ctttagggct taaaatattg taatttccta
     1681 taaagctagc cacaaaatga gattctggta aaagataaag attgtttgcg ttggaatttt
     1741 gtatgatttt acccttattc attaaaataa tcctatcgga taactctaaa gcttcttctt
     1801 gatcgtgcgt tacaaaaata gttgtgagtt caagttcttt ttgaatttct ttaatttgca
     1861 cccttaaatg cttacgaatt ttagcatcaa gtgccgataa aggctcatca agtaaaagta
     1921 aatcaggttt agtcaccaaa gatcttgcta aagccactct ttgcatttgt ccgcctgaaa
     1981 gcttatgtgg ataagtttta gcgtattctt caagctcgac gagttttaac atttttttca
     2041 ctcttttttc tatgtccttt ttatccattt ttttgatctt taaaccaaaa gctatatttt
     2101 caaaaacgtt aagatttgga aaaagagcgt aattttgaaa aaccatacct atatttcttt
     2161 tttgaggact taatttggta agatctttat catttaaaga aatttttcct ccattaattt
     2221 ggctaagccc tgctatacac cttaaaagag tggattttcc acagccactt gggcccaaaa
     2281 gggttataaa ctcacccttt ttagcactaa aattaatatc ttcgaaaata attttatccc
     2341 cataagcttt tttaaaattt ttaatcttta aataagccat ttttcactcc ttaatcaaac
     2401 tagctataaa agttgttata aaaattaata caaaataaac tattaccaaa gcactagaat
     2461 aatgcccact ttgatttttg atattataaa gataaacttg taaagtctca taagcacttc
     2521 ctacaagaat atttgcgtat aaaaattcac ctattaaaaa agaaaaactt aaaaaaactg
     2581 ccaccaaaat tccatttctt aagttaggca agacaagttt aaaaatcgct cccattaaag
     2641 aacctccaag catagcatta gatgcgatga gttcatttaa attgacatta gatatagcat
     2701 tatctaaagc cctatatata aaaggcaaag ctatagtaaa ataagtaaaa atgagtatcc
     2761 aagctgtgcc tcctatattg tcagcataaa gttgcaaaag ccctacacag ctaactatag
     2821 gaggtacagc aaaaggcatg ataataagta tatttacaaa ggcttttaat tttaaaaaat
     2881 aataatttaa cacaaaaacc aaagggaaaa caagaatcac agaaagcaag atactgccga
     2941 cacaaacaag caaagaatgc caaagagcaa gtaaaaatct ttcatcatga aaaagttcct
     3001 gataccattt aagcgtaaga tcatcaggca aaacacttac accccaagaa gtggaaatag
     3061 aatataaaaa agtagccatt aaaggcaaag ctaaaaataa aaaaaccaaa aacaaaactg
     3121 cataatgata aattttagct tttaaactca aattttcatt catttaaagc accttaaaat
     3181 tatatttttt agaaaggaaa ttggctataa aggtaacaac aagcatgata atagttataa
     3241 tgatgcttaa agcactagcc atataaggat caagattgat atcgcctgcg attaaagcag
     3301 cgattcttac aggagcgaca ttaaaatttc ccgaacttaa agcataaata gtcgcataag
     3361 ctccaaaagc attggcaaat aaaatcacaa aaacaccaaa caaagcagga gcgagcaaag
     3421 gcaaagctat ttttaaccaa tataaaaaat tgcctccacc taacatttta caagcattta
     3481 aatgtgaatt ttcaagactt ttaaaagctg gaagcaaaag caagattgcc aaaggaattt
     3541 gaaaatacac ataaacaata tttactccga aattagcata aacactaaca aaaggctcta
     3601 tgcctaaatt tttcaaaaac acattaacta caccattgct tccaagaact ataatgaaag
     3661 caaaagctaa aggaactcct gaaaaattac ttatcatagt atttaaagaa aaaagaaatt
     3721 tacatatttt tgatggagct aaaataaata aagaatagct cgccaaaagc cctattaaaa
     3781 gtccaaaaat actagaaata aaactgattt gtaaagaatt tataatgctt tgtagataga
     3841 atttggactc aaaaatatgt ataaaattgg ctaaagaata aatttcatcc tcttctacat
     3901 aaaaagcatt aaaaacaatc caaatcaaag gtgctatcat aaaaaaagta aaaactataa
     3961 aaaaaggtaa aatacttaaa aaggctagaa atttttcttt cattttttgg cctttaaaat
     4021 ttcatcatta tatctcttat cgtgtttaag tcctaaaatt tcacagatac tgccacaaat
     4081 ttcatcctgt tttatcttgg cattttcata cgaaaaagca ctaccaaaag tgaaaaaagg
     4141 cactaaaatt tcatcttcgc ttaagcctcc atgactttta ccctctgtca taccatgatc
     4201 gcttgtgatg attacattaa taccttgttc taaccaagtg ggcaaatact cagaaatcaa
     4261 aacatcaact tttttggttt tattagcata ctcaatagag tgtgagccaa atttatgtcc
     4321 tgcatcatct atattcatag aatgtataag agtaaaatct aaattatatt tgtttcttaa
     4381 atgctcccca tctgcaaata aatgagaatc taaataatca tcttcataat aaaaatgtcc
     4441 ataaggcaaa gttaaatttt catcttctat atggcgatgt aaagaaggaa taaattcttt
     4501 tttattataa agctcaaaaa cccaatgata agccgcactt ccagctttta agccttgttc
     4561 tttgcaaagg tcaaaaatgc ttgtttgttt tgaaaaactc aatttattat taattatccc
     4621 acttaaaaca ggctttacgc ctgttaataa gcactcgtat aaaggacgag acatactagg
     4681 aagttcgcat tctaaagaat aaaatttgcc caaattctct ttgcaaagcg catttaaata
     4741 tcccatattt atactagcgc ttttacaatt taagccatca agcacaacta aaataacttt
     4801 ggacatcatt tactctttaa aaaatctttt acttcaagta aaataaattc attatcatca
     4861 ctcttattag gttctctgct tgaagaataa ggaaagttat tgtcattttc tacaactata
     4921 tgagagtcat ctactatatc cacaccttct atggtttcaa aaggaaaaac aaatttatca
     4981 tttactaaag gctttttaga aattttattt ctatccttaa tatttaaaag atctatataa
     5041 gaaatttttt gagcttcatg agttttatca tctaatttaa ccttataaat tcttttaaat
     5101 tgagctacat tattaaaaca atgcttagta tcttcacctt ctttgcaagc cttatcttta
     5161 gtgccttctt tttgatctct ttctatgatg atgccgtatt tatcatctat catattaaaa
     5221 tcacctatgg aatggctttt atcttctaag aaatatttat aagtttttcc ggtgaatttt
     5281 ttatttttta catcaaattc tatgattctt agatattctt tacctttttc attctcataa
     5341 gcgttgttat tgtaaatgct tccttctaaa agcaaataaa gtttagaacc atctttagag
     5401 cttgccatag cttcaaagcc tttagaacgc ttgatattaa atttctcatt ttctccatca
     5461 ggcttatcgc taaattttaa atttggatta tcaggagaaa taagtttttt accctccaca
     5521 tacacatcaa aaacttcttt taaattccca ttcttatcaa aatgaagcaa ataaggacca
     5581 aattcatcac ctatataaaa ttcatcattg ataagctgta tactctcagt atcaaaatca
     5641 gccccactta aatacctttc tttggttgtt tcggtggtta taggataagg gtatttttta
     5701 tcactatctt taaaaaaaac tgtttttaaa agttcgtatt ttgagttttt aaaatcaaat
     5761 ttaaactcgt gagcataaag catagcatca taagaattat actttttacc caagccatta
     5821 tcactaatca cccaaaaaac atcttttttt ggaatatatt ttatcccact atgtccttgt
     5881 ataggttgat ttttaaaagg taaataaaaa tctgtttccc tgtttccctt agatttaaaa
     5941 gttccaattt tttcttctct agtgatattt gcaaatttcc cataagtttt aaaaaaatca
     6001 ggagcatcct taggaggttt tactgtactt ttagaatcta tgataatatg ccctgctaaa
     6061 ttggcctcat gctcttgaat tccaaataaa acactgcaaa gcatagcact tgttaaaata
     6121 acctttttca tccaatctcc tttatttcat atccactata actttttctt gccaaagttg
     6181 tggcaattct ttagcgcttt tttcccaagc tttttgatct ttgattgctc ttgcattttt
     6241 gtattgctca cttggtaaaa gtttagcttt tatatcatct ggcaaggtaa tatgatcaat
     6301 tcttattggc cttgcataac cttttgctag attgatttgt cctttatcag aaagtataaa
     6361 ctcacgagct aatttagccg catttggatg ttttgcgtat ttattgataa tagttgtata
     6421 gcccgaaata acactaccat cagcagggat taaaacttca taacgatctt tgcccacttt
     6481 atctctatag cctaaaccat taaaatccca aactaaaccc acttcaactt cacctttttc
     6541 aagattagct atgcttacat cattatttac aagtcttcct tgtttggcta aagtattaaa
     6601 aaaagctaaa gcaggactta aatctttttc atccccactt aaggcataat tagctgccaa
     6661 aactgcactc acagcttgag ctgctacact tacatcaccc acggtaattt tataatttcc
     6721 cttaagcaaa tcttgccaag ttttaggtat atcttttact acatctttat tgactataaa
     6781 agctatggtt cctgtataag ctaaaagcca atttccatct ttatctttag cccaagttgg
     6841 aatttgatcc cagtagcttg tcttaaaagg ctgagctact ccttgtttaa ccgctatctc
     6901 tccaaaagaa gctcctacat cccctatatc accgcttgca tttttctttt cggctttaaa
     6961 tttagcaatt tcttgagctg aactcatatc tgtatcacta tgttctatgc cataaagatt
     7021 tttaagatct gcccaagtat ccttccagtt tgcccaagta tcaggcatag ctaaagaatt
     7081 taccctacct tctgcttgca cagctttaat caaattctca tcaatagctt gtgaatttga
     7141 aaacaataag acaacaagac ctaaacttaa gaaaaatttc ttactcattt ttttcctttc
     7201 aaaaaatatt ttggaaattt aatgagtttt agaaacattt tagaaacaag ttaattttta
     7261 agcaaacaag gttataattt taaagtcata aacaaggagc gatcatgctt tatatttata
     7321 tcaaaactca aaatgcttta gttcaaagaa tcaattttaa tctcgatagt caagaactac
     7381 cacaaaatat tttatggatt gatttacttc atccaagtgc agcagaaatt gcttttatat
     7441 caagtgaatt taatcttgag tttcctacaa aagaagaaag ggaagaaata gagcttagcg
     7501 caaaatattg ggaagataat gcgacaataa ccatcaatgc tcatttttta gtaagagatc
     7561 ttaaaagcga tgaagaagat aggaatttaa tcaagcttcg cacagaaatt gttacttttg
     7621 ctaccgctaa aaatatctta tttactataa gatataacga atttagcact tttgaagaaa
     7681 ttcaagcaag gattttagct agtccgaaga attttgaaga tggttttgat attattgata
     7741 aaatgtttga agtgcgtgtt gaaaaagatg cggatttact agaatggata gataaagaag
     7801 caagacgctt aagaacaagt gttttagaaa aaaaagatga atatagttat gatgaaatgc
     7861 taaaggatat ttcaagttta caagagctta atatgcgggt aagagattct ttgtttgata
     7921 agcgtcgcgc tatgacttct ttgctaaaaa gcgataaaat cgataaagat ataaaacaaa
     7981 atctcactat agttttaaaa gacttaaatt ctttggttga atttagtgtt tcacaactta
     8041 atatcttaga taatatccaa accattttag ccagccaaat caacatagaa caaaacaaaa
     8101 tcattaaaat tttcaccgtt gcaactgttg ccatgatgcc acctacttta ataggaactg
     8161 tttatggtat gaattttaaa ttcatgcccg aacttgaact tcactatgct tatcccatag
     8221 tgcttggcgt gatggtaatt tctatcattt tacctttggt tgttttcaag aaaaaaggat
     8281 ggttataaaa atttattaag gagaaacaat ggatacaata aacataggag ttttgaccct
     8341 aagcgataga gcaagtagtg gtatatacga agataaagcc actgctgaaa ttgaaagagt
     8401 gttaaattca tatataaaaa atgatattat ttatcataaa gaattaatcc ctgatgatta
     8461 tgatttgatc attaaaaaat tactttatct agcagatgaa aaaaaatgcg atttgattgt
     8521 tacaagcgga ggtacaggtc cagcacttcg tgatgtaacc ccagaagcca cggaagccgt
     8581 gtgtgataaa atgatgccag gttttggaga acttatgcgc ttagaaagtt taaaatatgt
     8641 cccaacagct atactttcaa gacagagtgc aggaattcgc aataaatctt ttatcattaa
     8701 tttaccagga aatcctaagg ctataaaaga atgcctagag cctgtttttc cagctatacc
     8761 ttactgtatc gatttgatag aaggtgctta tatagaagca aatgatgaag ttattaaggt
     8821 ttttcgtcct aagaaaaaat gtcaaaatta aaatttatta gccctaacaa gtctgcttaa
     8881 ttgtctagca agtagacttg ctgaagcttc atctttgctt atcttttgta ctttattttt
     8941 aaacttacaa agcctgtcat ctaaaatcac atcattgatc ggaattttag gcttttcttt
     9001 ttgcttttgt gaaatctttt tcttaaaaaa cattctttaa tcctttttta taaatataca
     9061 tcaacttagt tgaaaagaat attattttag attttaaact attaacttta tttcattatt
     9121 ttaagctaga attcgaaaaa aaccaatcaa ggaaaaataa tgactttaat tgcaatttta
     9181 tgtctttaca cagcgctttt atcttggatt tcctatgctc aaattcgttt cttagaaaga
     9241 gaaaaagaca aacaagctca aattttaagc gaaaaagact atcaaaatgc agcagatatt
     9301 gccatcgaaa atgaaaaatt taaactattt tccaattttt ataatttaat catcaatatt
     9361 gcatggatag gttttggatt tttatatctt aaagaattgc ttatctcaag caacactcgt
     9421 tttgaaaata ctttattttt attatctttt ttaataatca caagtatttt aaatctacct
     9481 ttaagtattt ataaaagttt tatcaaagat aaagcccatg gtttttcaaa tatgactgta
     9541 aaacttttta tcaaagatac tatgaaaagt cttattttaa ctttaatatt tggattttta
     9601 atcctttatg ctttgctttt ttgctatgat ttttttggaa ctttttggtg gattgcggcc
     9661 tttatttttg ccttttgtat tatagtgatt ataaatctca tctaccctac cttgatagca
     9721 cctattttta ataaaatgaa aaaactagac gatgaaaatt tattgaaaaa aatcagctct
     9781 ttaatgaaac aatgcgggtt tagtgcaaat ggggtttatg ttattgatgc aagcaaaaga
     9841 gataagcgtt taaatgctta ttttggtgga ctttttaaaa gcaaaagagt ggtgcttttt
     9901 gatacattat taaaagcctt aaatgaaaga gaacttttag ctgttttagg acatgagctt
     9961 ggacattttg ttcataagga tattatcaaa gctttattta acggcgctat aactatgttt
    10021 ttactttttt ttgtttttgc aaatttacct gaatttgttt acttagaaag tcatctagaa
    10081 ggagtaaatg gtggcgtgtt tgctctttta tttatcttgg caaatatttt tagcttttta
    10141 atctctccta tgcttaatgc cttaagtaga aaaaatgaat ttgcagctga tcaacacgga
    10201 gctaaagtta caagcaaaga agatatgaaa aatgcattga tagctctagc aagagaaaat
    10261 aaagctttta tcaaaacaag taaaatatat acattttttt atctcagcca tccaagtatt
    10321 agtgatagaa tcaaggctct ttcttgacta taaaaaatgc tcttatggaa gctaaatcta
    10381 gcttaaaagg ttatgaaaat gaagcagtat ttatactctg tgaatatcta aaaaaagata
    10441 aagcttggtt atttttaaac caagatatac aaatagatca tgaaccttat tttgagctta
    10501 taaagcgttt taaatctgga gaaccttttg aatatatatt tgaaaaagtg gatttttggg
    10561 gcttagaatt taagataaaa aaaggcgttc taatccctcg ctacgatagt gaaattttac
    10621 tttttcaaat tttaaattta tgcaaaaaaa atacttttaa tgggatttta gaaataggat
    10681 ttggaagcgg aattttaagc attgttttag ccaaagaact tgggttaaaa atcacagcct
    10741 gtgatatcaa tcccaaagcc ttagaattag ctttagagaa tgccaaatta cacaaagtcg
    10801 atcacttgat tgactttaaa ctttgtaatt ttaagcaaat taaagaaaat tatgatttta
    10861 ttttttcaaa tccaccctat attaaaaatt catatcctat agatatttgg gtgcaaaaag
    10921 aacccaaaga ggctttattt ggtggagaaa aaggatatga aattctagaa gaaatcatac
    10981 atttttccct tgataaaaaa gttaaatttt tagcttgcga atttggctat gatcaaaaag
    11041 aaattttgga aaaaatttta tatcaaaata atttcattgt tgatttcttc aaagatgaac
    11101 aagattataa tcgtgctttt atagctaaat ttacaaatat gcgctatgat aaaaaataaa
    11161 aggagaaact cttgaaagct gttaatttat ttttacttgc ctccatcata ggggttgaac
    11221 tcatactagg aatagttgtt gcaccaacaa ttttttttcc tcaaaatctt ataggagaag
    11281 gagtgttgag ccattttcaa agtggcttaa tgatgacgca aatttttatt aagatgggat
    11341 atttgctgat ttttgtttca gtggttaatt ttttatatga aatttattct cttataaaag
    11401 atgaaatgaa atttcaaata aaattttcaa aatttatgct gagtttgctt attttgattt
    11461 taagcttaat atttgttttt tattttacta ataccataat tgaactccaa aacttaggcg
    11521 aaaacgctac aaaaactcaa gaatttatca gtatccataa tgcaagtgaa gtggtgatta
    11581 aaatcatctt gataatgcaa gtttttttat atttcttaag ctttaaaata gcaaaaaaat
    11641 gataaaatat aaataaatcc gaaagagaag gagtaggcca tgatgatctc tgatgcaact
    11701 atgatgcaac aaaattatta tttaaacaat gcacaaaaag ctagtgataa agctttagaa
    11761 aatattgcag ctgttcgcgc aataagtgga gttgatagtg ctaatttagc tattgctgat
    11821 tctttaagat ctcaatcaag cactatagat caaggtgtcg caaatgctta tgatgctata
    11881 ggggttttac aaattgcaga tgctagcctt accaatatct ctcaaagcgc agatagactt
    11941 aatgaacttt cagtgaaaat gaacaatgct gcacttaatg attctcaaaa aggaatgcta
    12001 agaacagaag caacacgcat acaagaatcc atcaatgatt cttttaataa tgcaacttat
    12061 aatggaaaaa atgtctttca aactatgaat tttgtagtag gtagcggaac tgaaactaca
    12121 aatttaaatc cattagcaac aggtggatta agcatagata atcaagatag tattacaaat
    12181 tttatggatc aacttggaag tttaagaagt gaaataggct cgggtatcaa tgccatcaca
    12241 tcaaatatta acgcaagtgt tcaaaatagc atcaactcaa aagcagctga aaataattta
    12301 ctaaataatg atatggcaaa aaatgttaat gattttaatg ccaattatct aaaagaaaat
    12361 gctgctgctt ttgttgctgc gcaatccaac atgcagcttc aaagcaaaat tgctaattta
    12421 ttacaataat ataagcccta aatagggctt atttctttat caaaatgact ttagagcaaa
    12481 ttttagaaaa aaccaaaaac gttcgtcttg tagccgcaag caagtatgtc gatgcaagta
    12541 caattgaaaa gctttttgat caaggtatag tagaatttgg agaaaatcaa gtccaagctc
    12601 tagcacaaaa aaaagaaaat cttgatgaaa aaaaactaga cataaagtgg cattttatag
    12661 gaacgctaca aagcaacaaa atcaatctct taatcaaaca aaaacctata ttatggcact
    12721 cttgtaatgg tattaaaata gctaaagcta tggacaaaag acttgattat aaattaaata
    12781 ctttattaga aatcaatagt gcaaatgaaa atagcaaaag cggtctagat ccaaatcaag
    12841 ctgtagaaga atatttacaa atacaagaag aatgctctaa tctaaatctt tgtggcgtaa
    12901 tgagcatagg atcacacagc caagataaag aaagtattat caaaagcttt gaaactacat
    12961 ttaaaattta tgaaattctt caaaaacatg gggctaaaat ttgctctatg gggatgagta
    13021 atgattttga aattgctata aaatgcggat ccaacttagt aagacttgga agcattttat
    13081 ttaaaaatct taagtaagaa caatcttact taagcatatt tattagaaat ttcctctact
    13141 atactatcag agataataaa atctgtatga taaagcaagc aagatcccgc gctaataact
    13201 tttaaaacaa gttttttatt gtttttttca ttaggattat gtgcatttct agcaatttca
    13261 tgaatttcat agattaattc tctatttaac cttgtcaaat ctagctctat gatatttttt
    13321 tcaaattcct taggttctgc ggtaaaatga ttttcttctt tatttttgaa atcttttttt
    13381 gctccaaatt tttttatagc tttaatctcg ccatcttcaa gactttgtaa atctttaatt
    13441 gcttttaaaa aaaagctagg cttctcccct ccctcagctt taaatcccaa tacaaaacca
    13501 taggcattat tttttaaatt ttcatctttg atgatatttt ctatttcttc tacattgctt
    13561 tcaaatacag tagcatcaaa cgaagaataa taatccaaaa tttcaattct accataacgc
    13621 ttattatttt tactcatcat ggatttgaaa tcttcaattt tacctatact taaaatttct
    13681 ccattgtttt ttaaactttc aaaatctaaa cttttaacat aatctatggc attaatttgt
    13741 tcataaaatc gatctaaagg atggcctgaa acataaattc ctaaaatttc tttttcatat
    13801 cctaattttt ccatcacttc aaattcttca tttttgggag taaaatttac ttgaacacct
    13861 gaagttaatt cctcttcacc aaaaagagaa cttgcagcat tttttcttac ttcagccatc
    13921 ttacgcgatg cttcgctaag attttccata ttatcaaaca aagcttttct cgtaaaacca
    13981 aactcatcaa aagcccctgc cttaataaga ctttctaatg ttctgcggtt tatcttggta
    14041 ggatctatct tacctaagaa atcattaata tccttaaatt ctccatcttg tcttgcttca
    14101 agtaaatttt caactgcagg aatacccaca ctttttatag ccccaagtcc gtatataata
    14161 gcatccttgc catcttgctc taaagcacta aattcacgga tcgctttgtt aatcgatgga
    14221 ggtaaaagtt taatattcat ttttttcatc tcatcaatat aaacagcaat tttatccaca
    14281 ttgttttctt cgcttgttaa aagcgctgcc ataaattcac taggataata agtttttaaa
    14341 taagctgttt gaaaagtaat caacgcataa gccgcagagt gagatttatt aaaaccatat
    14401 cctgcaaatt ttacgataag ctcccataaa tcctcagctt ttgctctatc atatccttgt
    14461 ttttctgctc catctgcaaa atcagtttta agctttttca tcttctcagg atctttttta
    14521 cccatagcac gacgcactac atcagcacct cctaaagaaa agccacctat aatttgaaca
    14581 atttgcataa cctgttcttg ataaacaata accccataag taggctctaa aaccttttct
    14641 aaactgtcaa aaggatattc tatacttttt aaaccatgct ttctgtcgat aaaatcatca
    14701 agcattcctg attccatagg acctggacga taaagcgcaa gaaccgcaat gatatcttca
    14761 aaacgctctg gttttaagcg tgcatttaaa ctttgcatac cgcctgattc gatttgaaaa
    14821 attcccaaag tatttccact ttgtatggtt ttataaactt tgctatcatt tacatctata
    14881 gtttcccaaa taatgtcttt attgtaacgc tttttaataa gcttgatcgc attattgatt
    14941 actgttaagg ttttaagacc taaaaagtca aattttatca aatccacatc ttctaaatga
    15001 tctttagaat actgcgttac caaatgtctt tcatcatttt tactttgtct aaaaagcgga
    15061 gttttcttcc ataaactttc attagaaatt acaacacctg ctgcgtgcat acccgcattg
    15121 cgatttaatc cttctaaagc tcttgcatac tcccaaactt caggaccttt aggatgacga
    15181 tcgataaatt ctttaatttt aggttctttt tcataagcag catcaagagt gattttaagc
    15241 tcttcgggca caagtttagc aagctcatca gcatcttgaa tactcatatc acaaactcta
    15301 gccacatcac gaatcacccc tttagccaaa agtttaccaa aggtaatcac ctgtgcaact
    15361 ttatctgctc catatttatc aatcacatag tcaatcactt cagcacgtct gtcttgacaa
    15421 aaatccacat caatatcagg catgctcaca cgctcaggat ttaaaaaacg ctcaaaaagt
    15481 agactataag gaataggatc taaatccgta atccttaaac aataagaaac caaacttccc
    15541 gcagctgatc ctcttccagg gcctactgga atacctttat ctttagccac tttaataaaa
    15601 tcatgaacaa taagcatata acctgaaaat ttcatatttt taatgatgtt aatttctact
    15661 tcaagtcttt gtttgtattc ttcatgcttg ctttcatcga taaattttaa tctctcttca
    15721 agtccctttt tacaaagttc ttcaaaaact atgtcatcat tatcaaagct aaattctttt
    15781 gtttcttcag gcaaggtaat attatgatct ttagcatatt ctcttgtaaa tttaaaattc
    15841 ggtggagtgg gattgccaag attaagctct aaattacatt tttgcgcgat ttcttgtgta
    15901 ttttctatag cttctggaat atctgcaaaa agctcactca tttgctcagg gcttttaaca
    15961 taaaattcat gcacactatg acgcattcta tcaggatcat taagtttttt tcccatagct
    16021 atacacataa aaacctcatg ggcagccgct ctttctttga aagtataatg cgtatcattt
    16081 gtagcaataa tttttatatt taattcttta gaaagtctga taatatcatc atctatcatt
    16141 ctttgatcgc ctataccatg acgcatgatt tcaaaataaa aatcatcttt aaaaactttt
    16201 ttataccata gcgccgcttc ttttgctgct tcatagcctt ttgcaccaaa acgcacattt
    16261 ctttcactat aagtatttaa gtgccaattt acttcacctt gcaagcaagc agaagaacaa
    16321 ataagacctt cgctatgatc ttccaaaagc tttttattga tacgcggata ataatacaaa
    16381 cctttaatat aactttgaga acttaaatac attaaatttt gatatccgat ctcatttttt
    16441 gcatacaaac aaaggtgaaa acgctgacga gaacttttat catctaattc atcgtgatta
    16501 tgcaaatacg cttccatacc aatgataggt tttaaacctt gtgctttcat tgtttgataa
    16561 aaatcaattg ccccaaacat atttccatga tctgtcatag ccacacttgt agcaccctgc
    16621 tcttttaaag tcaaagctaa ttctttaagc ttattggctc catcaagcaa agaatattct
    16681 gtatgtaaat gtaagtgtgt aaattgactc attttcttcc tttagttttt taaggcttat
    16741 tttaaaatta taaatttttc tcgctgaatt tgaaagaaat tggtcctaaa tttcaactta
    16801 aattttacaa aaaggcaaaa attcagccaa aataaactat aataaaatct aagattttaa
    16861 tcttaataaa aagaactttt caaaggatga aatgatgaaa gtaaaaattg cttattgcaa
    16921 tctttgaaat tatcgcccac aagctgcaag ggttgcagaa gaactacaaa gcgatttcaa
    16981 agatgttgaa gtagaatttg aaattggcgg cagaggtaat tttatcgttg aagtagacgg
    17041 aaaagttatc ttctctaaaa cacaacttat taattgcgaa agtgaaagat ttccatatca
    17101 aaatgaaatt aatcaattaa taaaaaatag agtgtaatca aacactctat cataacattt
    17161 tctcatattc cttaccaata tatatgtttt gctcatactc gataatagga cgcttaatac
    17221 aacttggatt ttctaataca attttttcaa gttctttttc atttaaattt ttaacttttt
    17281 ctttgtttaa accaagtttt ttagaagtta atccagcagt attgataagt tcttcaaaag
    17341 atttttgttt taaccatgtg tataaaatat cttgattaat ctttttaata tccataaaat
    17401 caaacacaat gcctttttgt gttaaagcat ccatagcttt ttttacagaa ttgcaatttt
    17461 taataccata aagtttcatt ttctagcctt ttttaccaaa tctgcgatta aaaaagcaag
    17521 ttctaatgct tgatccgcat taagtcttgg atcgcattga gtctcataac gatcttccaa
    17581 gctttgagca gtaacattgc ttgcaccacc tgtgcattct gttacatctt tcccagtcat
    17641 ttcaagatgc accccacctg gataaactcc ttcgcttatt gcaatctcaa aaaaagatct
    17701 cacttcttgc atgattttat caaactcacg tgttttaaaa ttacctgctt ttactgtatt
    17761 tccatgcata ggatctatgc tatatactaa atttaaacct tcacttttaa gtttagagaa
    17821 aatttttggc aaattattga taattttatc tgcacccatg cggataataa tatttaatct
    17881 tccttcttca ttatttggat ttaaaacatt tgctaaagct atgatatcat cagcacttgc
    17941 actaggtcct attttaaccc ctaaaggatt ttttactcct cttaaaaaat gtacatgagc
    18001 ttcatcaagt gcccttgttc tttcacctat ccaaagcatg tgagctgaac aatcgtaaat
    18061 ttctccactt aaactatcca ctctagttaa agcttcttca taaggcaaaa gtaaagcttc
    18121 atgtgaagta taaacactaa cttctcttag gcttggagta ttacttgtat taatcccaca
    18181 agcttccata aaagctaaag cttgtgaaat tttttcactg atatcagtat attgcttatg
    18241 gagttcactc ttttttaaaa aacccaaatt ccaacgatgt acttcatgca aatctgctaa
    18301 accaccctta gcaaatccac gtaacaaatt tagcgttgtt gcactttgat aataagcttc
    18361 aagcattcta tgtggatcag gaatgcgtgc ttgttcgcta aattcaaaac cattaataat
    18421 atcaccacga taactaggaa gacttatacc atttaactct tcaaaatcac tacttcttgg
    18481 cttagcaaac tgccctgcaa tacgaccaat ttttacaaca ggacatccac cggcaaatgt
    18541 aagcactata gccatttgaa gtaaaatttt aaacatatca cggatattta cagcgccaaa
    18601 attttcaaag ctttcagcac aatctccacc ttgaagtaaa aaagcttctt ttttacaaac
    18661 tcttgctaaa gacttttgaa gatttctcac ttctccagca aaaaccaaag gaggaagctt
    18721 ctcaagtctt gctaaaactc tattcatttc ctcttgatct ggatagatag gttgctgttt
    18781 tataggatag tttttccaag aattcttagt ccacatggtt ttttctttcg ttttatttat
    18841 cagcttcctc tataagttga ataaccaaaa ggagaaaggg ttattggaac atgataatgt
    18901 ttttgatctt tagaaagctc aaaacttacc tctacaaaag gataaaaagt atttattttg
    18961 tgtgatgtgt aatagtcttt tgtgaaaaat ttaagcttat aaattccaaa agccctattt
    19021 tcagcttttt catatggtaa taaatctcct attctaccat tttcttcggt aaattcttca
    19081 cttacttttt tccactgttg atttgcttcc aacttataaa gctcaacttt tactttagga
    19141 gcaggttgtc cagaagtaat atccaagaca tgagtactta attgatattc agtagcactc
    19201 aaaaacattg gcacgcttgc tagtattaat aaagtttttt taatagaaaa cattttctct
    19261 ccttgtataa tatttacaag gaatattata caagagtatt attaataatt aaaatcaaat
    19321 aataaaaatt ataaattaat tataattatt taattgttag gcttataata aaaaataatt
    19381 ataaattatt ttttaagctc tttaatacgc gctgctttac cgcgtctatc tcttaagtag
    19441 aataatcttg cacggcgcac acgaccacga cgcaaaacag taatactttc taaactttca
    19501 ctataaatag ggaaaattct ctcaacgcca acattattag cgcccatttt acgcacgata
    19561 aaagtttcac ttacgccatt acctcttcta gcaatacaaa taccctcaaa attttggatt
    19621 cttgttttat ccccttcttt gatgcgaatt gcaagcttta aagtatcacc agcacgaaaa
    19681 tctggaacat ttttaccttc aatttgtttt gcttcaaatt gttctatata tttatttttc
    19741 ataaaaaatc ccttattttt tgcgttcatg ctctaaaaat aaatctggac gaaaaaattt
    19801 cgttttgcaa gacgccaaag tagtttttaa acttgcaatt ctagcgtgat taccctttaa
    19861 aaactctgaa ggagtataaa attttttatt ttttttctca aaaataaaag gttttgaaaa
    19921 agcaggcgct tcgagtaaat tattttcaaa gctttcttct tccaaacttt ccatatttcc
    19981 taaaaccccg ttaacatttc ttaaaatcgc atcacacatt acaagcgcag gtaattctcc
    20041 tcctgttaaa ataaaatccc ctatgctaaa aacttcattc gcaaaaattt caagcactct
    20101 ttcatctata ccttcatagc gcccgcatac aaaaactata tgttcttttt tacttaagcg
    20161 tttggcgtct ttttgattaa aggttttacc acttggattt aaaaaaataa aatagggatt
    20221 ttcttttttt tcttgaatac ttcttagcac ctcatacata ggttcagctt gcatcaaaag
    20281 tccagctccg ccacctattt tataatcatc gactttatga taggaatttt tagaaaaatc
    20341 tcttggatta taaaaattaa gtttgaaaag ttttttttct tttgctcttg caagtataga
    20401 atcttgaaag taaaattcca taagattagg gaacaaagaa acgaagctaa atttcatgaa
    20461 ttttctaaaa ttaaaaaagc atcttgcgtg caaaaaatct gtcgtttttc tatatctata
    20521 tttttaacaa atttatctaa atatggaata aaaaatattt taggatattt tttttcaacc
    20581 catttttcat cactttgaat ttcaaataaa taagaagctc cagtttccaa gatatcaatc
    20641 actttaccta atcttttatc ttcttcaaaa acttcacact ctaaaatatc aaaataaaaa
    20701 aactcatctt tttttaattt acaagtttgt ctgcttttct cgatactctg aaaaagaata
    20761 agattaatta attctttggc cttttctata tcttcataat tttcaaataa aacagtagaa
    20821 ttgcttgcat tataatgctt aatctttaac atttctttgg tgttttttat aaaaaaagta
    20881 gcatcttttt taaattgaga agaaaagtcg ctcaggttat gcaattttac ataaccctta
    20941 agacccacag ttttaccaag ttttgcaact tgaacaaaat ctttttcact caagtgcttt
    21001 taccgttact ctataagaac ttgcatcctt gctcttataa gcagagatta cggtttttat
    21061 agcattgatc atttttccat ttttacctat aagcttacct gtatcaacct tatgtgcaaa
    21121 aagaacaatc tcaaaaaaat tttcacttaa ttcaattttt tgagtatcaa tctgttcagg
    21181 ataatctgca attaattttg cgtattctct aagaaaattc tctaccatga ttatttgcta
    21241 gtgatagaag caactttatc gctaagtttt gcaccaacac ttttccaata agctaaacgc
    21301 tctgcatcaa ctttaattac ctcaggttct accataggat tataataccc aatactttct
    21361 atccaaccac catcacgacg ttttctactg tctgtaacta caatacgata aaatggtctt
    21421 ttagttctac ccattcttgt aagtctaata actgtcattt atactcctta aaaattaaaa
    21481 attttattta tagatactat aaaaagtatt tataaataaa atttaaaatt gccttctagc
    21541 ttgactcatc atctgtgtta aactttccat tcctttttta cctgaaaatc tttttgcaag
    21601 ctttgctgca ttgctaaatt gttttaaaaa acgattgact tctacctgag aaagacctgc
    21661 tccctctgct atacgacgct ttctagcatt atttaataaa tcaggatttt ctctttcttt
    21721 tggagtcatt gaagaaatca ttgctttaat gcgtatgatt tctttagaat tatccaaatc
    21781 tatatctttt accgcatttg ccattccgcc aagtcctggt atcatgccga ttaaagactt
    21841 catgcttcct aattttttaa tactttccat ttgattaaga aaatcattaa aattaaattc
    21901 acctttttta attttttgat tgagtttttt agcctctttt tcatcaataa tcgcagcagt
    21961 tttttcagct aaagttgcca aatcaccctc acccataata cgacttacta tacgatctgg
    22021 tataaaaact tctaaatctg ctactttttc acccacacca ataaatctta aaggaatacc
    22081 gatttgtttt gctataccta aggctactcc acctttagta tctgcatcaa attttgataa
    22141 aattaccccg ctgatattca aagcttcatt aaaactagcc gcagtcttga ccccatcttg
    22201 accactcatt gcatcagcaa catagaaaat ctcatcagga tttaaaacat ccttaactgc
    22261 ttttaattca ttcatcaaag cttcatctat agccaaacgt ccagcagtat ccacaagcaa
    22321 aacatccacc atagaacttt cagccttttt taaagcctct ttagcaactc taataggatc
    22381 tttttcattt tctatgaaga aaagttcaat ttcattagct tcacaaagtt gtcttagctg
    22441 ctccactgct gctaaacgct gtaaatcaca agctgcaact aaaacttttt tattgcgtaa
    22501 ttttaaataa tttgcaagtt taatagtgct tgtagtctta ccgccccctt gtaaacctgc
    22561 cattagaact actgttgggg gtttagaagc aaaaacaaaa ccttgatttt tgccattgac
    22621 acttaaaata ttttctaaat ttactttaat ggcatttaaa aattgttttt gacctattcc
    22681 gttttgcttt acatcttctt ctatcaaagt caaaagctct ttagttacct tatggtgaac
    22741 atctgctttt aaaagagctt tttttaaggt ttctaaagcg ttcttaagtg ctttttcatc
    22801 atcaacaaaa cgtaatttat taatcgctga tttaaaagat tcgctaacta actcaaacac
    22861 tttatcacct ttctataaaa tttttaaatt aaaccttgca ttatacaaaa ttttttctta
    22921 aatggcttta aaaatctaaa ttttttatct caaagccaac ttttgcaaaa ctattatcta
    22981 gctcagcctt aaaataataa tcaaaaattt taatttcata actatgtaaa tacattctat
    23041 cgcttgaaat tttagcatat ttttcatcac ctacaacgcc atgttttata aatttagcat
    23101 gcactctgat ttgatgagtt ctacctgttt gaatgactat ttttgctaag gttttttttg
    23161 actgcatcat aataggagta atgatgctta aggcacttaa accatctttt gaaactttac
    23221 ttaacgcccc gccttttgct tttatggtaa aaataggctc attcacttca acctcttcag
    23281 ccaaaacccc atctaaaacc gcaatataac ttttataaac tctatgtttt ttaaattctt
    23341 ctatacaaag ctttctaaaa tcttcatctt tgcaaagcaa aatcacaccg cttgtttctt
    23401 tgtctaaacg atttaaaagc ttggcattaa attttttctc caagtcttca ctcacataag
    23461 cataaggttt attaatagca ataatcttat catcttcaaa aataatttga ggatttttgg
    23521 tttttatcac attaaatctt gccttatcgc tcatcaaagc tctagcaacc acaacttttt
    23581 ttccatgtga aaaaacacaa cccttatcaa tcaaatcttt agcttcacga tttgaaattt
    23641 tttcttgcaa agctaagagt ttataagctt tttcttgcat caattccctt ttgtatggtc
    23701 tgtataataa gatctaaatt ttcttttttg gaaattttaa cttttaaatt taaataatga
    23761 attttatcat ttaaatcttt taaattttcg caaaaatata cattttctac ttcttcaaat
    23821 aaagcctttt gattatgaat aaatttccca ctgattaata cattgtcaaa atatgccact
    23881 tctataggat tgtgtcctcc tatgccttct atgaaagaac ctccaagcac aacaacatca
    23941 gaaattgcat aaaaatttac aagctctcct aaagcatcta aaagcaaaat ttttttagca
    24001 aatttcttat tttcatcttt taaagaacta aatttttcaa attccaaacc tttgtttaaa
    24061 agcaaatttt caacttcttt aaaacgctca gggtgtcgtg gggcgataat gagtttttca
    24121 ttttcttcta gtttaaaatg atcaagcaaa agctcttctt catctttatg cgtactagca
    24181 aaaatgataa gcttttcctt aggtttggca taaattttat tatttttaat ttctaaattt
    24241 gccttaatat ttttaaaaat tttaacattt ttagctccca aactttcaag tcttacttta
    24301 tctaattcac tttgagcaaa aacttcatca atataagaaa aaattttttt ataaaaaaaa
    24361 gaaaatcttt gataagaatg ataagattta tcagatattc tcgcattaag caaaataatc
    24421 ttagttttat aaatgtgtgc catgaaaaca agcataagcc aatattctgc ttcaaaaatt
    24481 accaaaacct tacaaggctt aaaccaaaaa ggcaaaaaat tttcaaaagc aagataattt
    24541 acctttttac aaaattcttt tgcatattca aaacctgttt gagtaatagt agttattctt
    24601 gaatcaaatt tcaaaaccaa agttttaata cttcttacct ccccgtaaga acaagcatga
    24661 aaatgtacat cagctttttc ttgatgtaaa tttttataaa gaaaaaatcg ggattttaaa
    24721 ctagttttgt atttggattt taaaaaagaa agcaaaagaa taaagacggc acaaaataaa
    24781 aatgccgtcc aagttaaaaa ataataaaaa aagatcaatt ttgttcttct tgctctttat
    24841 aaagaattct tccacaatga ggacaagtta caatctcttc accttttaca acagacagat
    24901 aagtcttatc gtaaattttc ataaaacatc catagcatgc ttgtttttta acaggaacta
    24961 cagcagtatt tttcgcccat ttgcgaattt tttcataaaa acttaaaact ttttgattca
    25021 tctcgcccac aagtttggtt tttttatcat aaacactcat tctatctttt tcaagaactt
    25081 ccatttcaga tttaatgctt actctaatct cattaatatt ttgctcttgt ttgatttttt
    25141 cttcttcaag ttctttttta taagtttctt tattctctaa aattttatcc agtcttacaa
    25201 tttcatcatt tgcagcgtct aattgctctt ttgcaatatc ttcttcaatt tttaaagcat
    25261 tagcttcttt ttctgttttt actgcaccac tttttttaga aagctcttta atttttgccg
    25321 aaaactcaga aatatgagca ttattttgta ctttttgatt ttctatatct ttgatttctt
    25381 catcgatttt ttctaaatct gtgttgattt ttcctatttt taactcagca tcttttaaag
    25441 tcctattaat actgtctatt tttggttcat aactatcaat ttcttgatct atttttgata
    25501 aaagcactaa ttgttcgaga tatttattca tttattttcc ttaaaaatat tgaaatggat
    25561 tttttgaaac tgttattata gcttgtagcg gcaaattttt caagtctttt gctaaacatt
    25621 gagaaaaata tctctcactt tcaaaatgac ccaaatcaat aagactaatt tgattactaa
    25681 gtgcctctaa agcttgatga tatttaaaat ctccgcttaa aaaacaatcc gcatctactt
    25741 tagaaattaa atccccgcca cttccagtac atatagcaat acgcttaatg tcttttttac
    25801 cacaatcact tacacgtaaa atttgtaaat ttaacttttt tttcacccag tcacacaaag
    25861 cttcaaaaga catagaattt tccacataaa ttaaaaattc gtctttaaaa gaaattttaa
    25921 aacctaaaat ttcttccgta aaataagtgt ttaaatgact taaatcgtaa tttgtatgca
    25981 tactgattaa agaaatattt ttacaaatca tttctttaat aaaagctcta ggataagtct
    26041 tgtcatataa atcttttaaa cctttaaata tcaaaggatg gtgtgtgata attaaagaat
    26101 tttcactcgc ttctttaatg atattttcat caatatctaa gcttaaataa acagttgaaa
    26161 tttcactatc cctatctcca agcaaaattc cactattatc ccatgattct tggatatcaa
    26221 agggacttaa ttgatctaaa aaattataaa tttcactcag tttcatttaa atttttctta
    26281 taaatttcag cacaattttt cgaaagctca cgaattttta acatataatc ttgtctttgt
    26341 gctacagaaa ttgctcctct tgcatctaaa agattaaaag tatgtgcagc aagcatacaa
    26401 taatcataag caggtaaagc tagtccttgt tctaaaatat ttttacattc tttgtaagaa
    26461 ttttcaaact gctcatttaa gatcttaaca tcacttactt caaaattgta tttactaaat
    26521 tcatattcac tttgcttatg cacatctgcg tatttaattt tttctccatt aaattcactc
    26581 caaactatat cataaacatt atcaacattt tgaagataca tagctattct ttcaagacca
    26641 taggtaattt cagcacttac taaatctact gctataccgc caacttgctg aaaataagta
    26701 aattgagtga cttccatacc atcaagccat acttcccagc ctaaacccca agcacccaaa
    26761 cttggactct cccaattatc ttcaacaaaa cgaatatcat gactttttaa atcaaaaccc
    26821 aaattttcaa gacttttaag atataattct tggatattat caggactagg tttaatcaaa
    26881 acttgaaatt gataataagc acctaagcga ttaggatttt caccataacg tccatcagta
    26941 ggccttctac ttggagccac ataagcagct gcccaaggtt tttttcctaa acttcttaaa
    27001 aaagttgctg gatgaaaggt tcctgcacct gctggcatat cataaggttg cataatcgca
    27061 caaccttgct cttgccaata attttgcaaa ttaagtatca tttgtgaaaa agtcattgta
    27121 tctctcttta ttgttccata ttttcaatag gtttttctaa atttttattc atttccaaat
    27181 caggctctgt cttagctcca aaaatttctg cggttttact ccacattaat ttatatttac
    27241 gcttgagaaa ttctatctct tcacgcgcat gttttagctc attgtttaag gtttctatag
    27301 tttttctatc ttcatcataa agttcttgca tagaataaag ggcgtctttt aaaaatttat
    27361 tctcattttt taatgcttca agtgtttcat ctttagcatc taaaactttt tcatgcaaat
    27421 ttaaaatagt tcctattgtt ttttcaacaa aactttctcc tgctaaagtc attgaattta
    27481 ccattgcagt ttgagatttt gcagaactag gtactacact aaaagtacct tgatgagctt
    27541 cgatgtaaat tttaccctct tcttctttaa aatttaaagc cccattggcc atcataccct
    27601 taaccacatc ttcatttaaa tgcacaagtt tacaaaattc ttcaagttca agataggttt
    27661 gcatttttat cccttataat aaaacttcta cttcttttga atcagataca agtttttttt
    27721 ctttttcaag acgatcttct ttaagctttt gtgctaaatc aacatcataa atagctaaaa
    27781 tttgcatagc caaataagca gcattgatcg ctccagcctt accaatagct aaagttccta
    27841 caggaattcc actaggcatt tgcaccgtag aaaacaaaga atccatactt gcaagattac
    27901 ttcctggcat aggcactcct aaaacaggtt ttgttgtata agctgcaaca gctccagcta
    27961 aatgcgctgc cattccagct gctgctataa aaaccttcgc acctttttct tcagcatttg
    28021 caatatactc ttttgttctt tttggactac gatgagctga tgaaatgata agttcatact
    28081 ttaccccaaa actttctaaa gttttagcag cctctttcat agtctcataa tcactcttgc
    28141 ttcccattaa aatagaaaca aaattcatct atatttcctt tcttaaaaaa cttaatgcac
    28201 tgattttatt tggtaattgg atttcatgtt cattaccgct atgaatttcg ctaaattctt
    28261 tattgttttt agcaatgagt tttttaaact ctataaaata tctatcctct ttttgataaa
    28321 ttttacctag ttcattatcg caagtttgaa tcacatcgcc taaaggagct aaaatttcat
    28381 aaggcgtgtt taaaacgatt ttccctttac atttaaaaaa gcttccatct tcgcttatag
    28441 catgtacttg atgagaacct tcttctatgc ttgtattatg attttgcgtg tcggtttttt
    28501 ctaaaggacg cgaaacaaga tagccatctg taaaaccacg attcttaagc gtagcaatct
    28561 ctttttcata cttacttgac tcaaatttac cctctaaagc atcttgtatg gccattttat
    28621 aagtccttgt tgtaagcgca acataatatt cgcttttagt acgcccttct attttaaaag
    28681 cactgataca attttcttgc atgatttttt ctatataaga acaaagattt aaatccttag
    28741 aattaaacac atgagtacca ttttcatctt cttctaaacg aaataaagta ccattttctg
    28801 gatttttagc ataaagctca taattaaatc tgcaatcatt tgcacaagat ccacgattgc
    28861 tcattcttcc actttgcaca gagcttatta aacaacgccc tgaataagca aaacacatag
    28921 aaccatgcac aaaagcttca agttcaatat cgcaattttc ttttaaagct ttagcatctt
    28981 taagtcccaa ttctctcgca attacaaccc ttttagcacc catatcctta taaacttgag
    29041 catctaaata atttaaaata tttgcctgag tagaaacatg taaagaaatt tcaggtgcaa
    29101 gttctttaac aagacgcata gctccaacag aagctacgat aaaagcatca ggcttcatct
    29161 cacgcaattt taaaatatgt ctttttaaac cttcaatttg agaactcaaa tgaaaaccat
    29221 ttaaagtaac ataaattttc ttaccacgct catgagtata tttgatagcc tcttcaaaac
    29281 tttcataatt aaattctctt gcagtgcgtg atcttaaaga aaaattattc acacccgcat
    29341 aaaccgcatc tgcgccataa gctaaagcaa tttttaattt tgtgaaattt cctgcaggag
    29401 ctactatttc aggaatgatc atttttgccc taaacttgca attaaagctt ctatatcatc
    29461 attacttaca acatcagcag tactatcacc ttcaatatgc actgcagaac ttacacgttt
    29521 tttatcatca attttacctt caaataaaga actcatataa cggcttaaag cacgcattac
    29581 attaataaca cgttcgattt tttgacgatg tatatcttga tactgcattg catccattgc
    29641 catcatcact tcatcttgtc cgctttgaag atttccgaca atctgcttag aacttttttt
    29701 agcttgattg tttaattcta aagcttcact gaaactttcc acattaggaa atttttcatt
    29761 aagtttagaa aaaatatcaa tatttttttc tattgcttta tttatttctt tgagtaaact
    29821 ttcagaatcc gcaaaaaaat tattaatact ttcaagctta tccatcattt ccgttgcttt
    29881 aagctcgcta tcttttgtaa catcatctaa ctgatgtaca actttatgct cctgatttgg
    29941 tgggggtggt ggccatacta cactaggatt aggtttgtaa tcagctattt tgacatcttc
    30001 taacatcaaa gcatcttctt cggtatttga ttcttcggtt tttacctctg cttctgtctc
    30061 tgaatcaaga tcaacatcac cattcatcaa agcatcaagc tcttcttgag tcattttttt
    30121 ccctttttta aatctagatt ttcaataatt gctcaaaatt ataatcaatt ttatctaaaa
    30181 caaaaatata aatttttatt ttttaatctt tttaaattaa atttttaaat ttattaaaaa
    30241 aaatatatta attaaatctt aattaaaaat tttatgatat aattttataa atttaattac
    30301 ataaaggagt aaaaatatgg gaaaatttgt taataatata gatgattttt tcaaattttg
    30361 caaacaaaat gaagtgcttt ttgttgattt tcgttttaca gatatgatag gaacttggca
    30421 tcatattacc tataatctcc atgcaatcaa tgaagaaaca tttcaaactg gcattccatt
    30481 tgatggaagc tcaatccatg gatggcaacc tatagaaaaa tcagatatga ttttaaaacc
    30541 tgatgcacaa agtgcttttt tagatccttt tacagctgat cctactatca tagtattttg
    30601 tgatgtgtat gatatttaca aaggacaaat gtatgaaaaa tgtccaagaa gcatagcaaa
    30661 aaaagcaatg gaacacctta aaaatagtgg cattgctgat actgcttact ttggaccaga
    30721 aaatgaattc tttgtttttg atagtgtaaa aatagttgat actactcatt gttctaagta
    30781 tgaagttgat accgaagaag gagagtggaa tgatgataga gaatttaccg atagctacaa
    30841 tactggacac aggccaagaa acaaaggtgg atattttcca gttcagccaa ttgattcttt
    30901 agtagatatt cgttctgaaa tggttcaaac tcttgaaaaa gtaggtctta aaacttttgt
    30961 tcatcatcat gaagttgcac aaggacaagc tgaaatagga gtaaattttg gcacgcttgt
    31021 agaagcagct gacaatgttc aaatttataa atatgttgta aaaatggtag ctcatttaaa
    31081 tggcaaaact gccactttta tgccaaaacc tttatacgga gataatggca atggtatgca
    31141 tgttcatatg agcttatgga aagatggggt aaatttattt tacgataaag atggatacag
    31201 tggacttagt caaactgcta taaattatat aggtggaatt ttaaaaaatg ctagaagtgt
    31261 cgcagctttt acaaatccaa gttccaattc ttacaaaaga atagttcctg gttttgaagc
    31321 tccttgtatt ttaacttatt cttgtcaaaa cagatcagca agttgtcgcg ttccttatgg
    31381 cataggtaaa aattcagctc gtatagaaat tcgcttccct gatagcactg ctaatcctta
    31441 tttagctttt gttagtcttt taatggcagg tcttgatgga atcaaaaata aaaccattcc
    31501 tgtgggtcct atggatgaaa atttatttga tcttactttg gatgaaatac gtgaaaaagg
    31561 gatagagcaa ttaccacata ctctaagagg aagtttagaa gctttaatcc gacataattc
    31621 ttatttaaaa cctgtaatga gcgatatttt tatcgatgac tatcagcatt taaaatttga
    31681 aacacaagtt tggccagtag aagctcgtcc aactgcttat gaatttaaaa cttgctactc
    31741 ttgctaaaaa tttaatggcg tttaacacgc cattaaataa aaaagaatta aaaattattt
    31801 attttatatc aactatcgct taagctgatt tacaattcct agcatatcat cacttgttgt
    31861 aattgcctta gaacccgctt cataagccct ttgtcctgtg ataagatctg tcatttcttc
    31921 aacaagctga acattactaa gttctataaa tccatgtctt attgttccaa gtccatcttg
    31981 tcctgctata cccgcaacag gtgcaccact tgctcctgtt tcaagataaa gattatcacc
    32041 catagaatga agacccgctg gatttataaa ctgaactagc tccacttggc caatttgagt
    32101 ttcttgttgc tcccctggta gcattacaga aacggttcca tctgtagcaa cattaattgc
    32161 tgttgcgcct tcaggtattg tcatttcagg taaaagtcta taaccatctg aatttacaat
    32221 attaccttca ttatcttttg taaattgccc atttctagta tatcctatag tgccatcagg
    32281 aagttgtatt tgaaaaaaac cattacctgc aatagccata tcaagaccat cagtacttgt
    32341 tgattttaaa tttccttcag taaaaacttt agttaccgct gttggacgca cacccacacc
    32401 cacttctata cccgaaggag aaagagtagt agctgaagtt gaagttcctg catacttcat
    32461 aacttgatac ataagatcag caaattctgc gcgacttttc ttaaaacctg ctgtattaac
    32521 attggcgatg ttatttgaag taacatcaat ttgtgtttgc tgcgctacca ttcccgtagc
    32581 agcagtatga agtgatctca tcatttttaa tcctttttta ttttatttta aattatttaa
    32641 cagctgcaag cttattgata gcttcttgat ttaagtcatc catatgagct gtcataactt
    32701 tttgatacat ttctaccatt ctgtttgctt caatcagtcc taccatttca gtaactggat
    32761 taacatttga tccctgagaa aaaccttggc gaatagcatt ggagttttcc aaatctctaa
    32821 tgcgggttag atcatctatt ttatagacat tatccccatc tttttgcaaa gctcttatat
    32881 catctacttg tgctacaaat aatcttgcat tttgagctcc atcaacctca atgcttccgt
    32941 ttttatcaac gctaatttga acagcaccat taggaatgcg tatgccagca ttctgaggat
    33001 tattaaaata atcactactt aataccttgt atccttgctt atttaccaaa taaccctcat
    33061 catcaagttg aaaatttcca tctttggtta atcttacttc tccatctttg gtttgaacca
    33121 aataaaaagc atcttctcta gtcattgcca aatccaaagg attgtttgtg gcctttaaag
    33181 aacctagact aaaatccgta tattcttgag aaacttgcgg gattccatct attgtagtat
    33241 ttacaaaacg agatgcatct cttgtgtgat tttctatagg caactcatcc tgagtttctt
    33301 taaaaatcct tttaaaatct gcaataacca catcatctct tttgtatcca cttgtattaa
    33361 tattggcaag attattagta atcacatcaa gtttattaaa ctgagttacc attccgccag
    33421 ttgcttgata atatccattt tgcatatttt cacctataaa attaagattt tatagctata
    33481 aaagcaaaga gtgttccaac ttttaaaaac aaagaaaaat aaatatttga aagattatta
    33541 ggagagaatt ttaaactata aaaagcaaga tttgactcaa tcttgcttta aaatcaattt
    33601 taatccattt gacgacgcaa gaaagtcggt gtttcaattt gcgccattat ctcttcatcg
    33661 taaccaccgc ttaccttttt aagacttaaa taaggatttt tcttagaagc ttgagcttct
    33721 tcggtaaatt ttttagctac tgtatctttg tcttcaaacc ctgtcgcaat aatagtcact
    33781 tcaactctat cttccatgct atcatctgta gtagaaccaa aaataatctt agcattttca
    33841 tcaacaattt cttgtatact atttgctgct gctgaaattt caaacaaaga gcaattagaa
    33901 cttgttttaa aatgtaaaat aactcccttg gcacctttaa tatccattcc atcaagcaaa
    33961 ggagattcta tagcgtttga aagagcctct tctatagcat tttcaccact agcactacca
    34021 acgcccataa gtgcgagtcc gcgatgactc atgatggttc ttacatctgc aaagtcaaca
    34081 ttaatatctc cattatcaag caagatagac accatacctt ttacagcacg agctaaaata
    34141 tcatcaacca atctaaaagc atctttaatg cctgcttttt tatcaataat gctcaataat
    34201 ttttcatttt gaattacaag aatagaatca ctttcttttt taagctcaag gagaccgctt
    34261 tcagcaagtt tttttctttg ttttccttcg aatgcaaaag gcatagttac aacagaaaca
    34321 gttaaagctc caatctcttt agctgcttgt gcaataactg gagtggcacc cgttccagta
    34381 cctccaccaa aacctgaagc aataaataca atatcacttt gactaagact tgcttttatt
    34441 tcttcaaaac tttctctagc actttctgca cctacctcag gaagcatacc agcgcctaaa
    34501 cctttagttt ttttctcgcc aagttgaatt ttagtttttg ctaatgaaat tgaaatagct
    34561 tgtgcatcag tatttgctgc aattaaatca agatcattta atcccatttt aaccatatgg
    34621 ttgatcatat taccgccacc gccaccgcag cctataacct taatttttgc acctttatta
    34681 tgttgcattt cttctactaa aaattcactc ataaaaattt ctccttgtta aaattgattc
    34741 ataattttat gccagatatt tgaaaaaacg ctaggttttt tttcttttgg ctctttaaaa
    34801 tctaattgtt cttgtattgc aattgtatca ttttcttgca aattttcatc aaaaaaatca
    34861 gattttattt cactttctgc atctttttgc aaaacaatat cttgtttaat ttgacgatta
    34921 aaattttcaa tttccccttt atatcttaat ttttcattag aatcaagttc ataaggcgta
    34981 aaataccccg ctccatataa acaaagtcct atagcacaag tattttcagg atcattaaaa
    35041 atttcactaa aaccagtaat caaatctttt cttgcagtag ctagtctaac tgagcgatta
    35101 tcaaatgttg caggagctag ctcatcaata cctgctaact tagtcattcc acctgttaaa
    35161 acaactccac cgcctatagc attggcataa cgattatcac ttaagatttt tgccaaaatc
    35221 atcaaagttt cttccgctct tgcataaatt acgtttgaaa taatatccaa agaaacttca
    35281 ttaacctttc tttcatcacc cattgaagga atttgtataa gggtattagg ctgttgtgaa
    35341 agagctgcat aattaagctt gattttttct gcttctttta aaggtgtatg caatgccatt
    35401 gataaatctt gggtaatatt aatcgagcca atttgcaaac aatcattata tctaattgaa
    35461 tttccagtat gaacaaccat atcacaaatc gctccaccca tatcaatcaa aacagcacct
    35521 aattcctttt cgctatcatc taaacaagct atagctgaag catatcctga aagaactata
    35581 ttatccactc ttaaatcagc taattcaact gctttcttaa gatttttaat atgagattct
    35641 tgtgaaatca ctatatgggt tgaaacttcc aaacgattac cactcattcc caaaggatca
    35701 tcaacatgtt caagatcatt aaccttaaaa ttataaggca aaacatggat aatttcataa
    35761 ccacttggta gattggcagt atgcttagct gtacttacag cacgatgaat ttctttaatg
    35821 cctatttcat gatttggaat attaacaaca cctatgctat caacgctttt agtataagca
    35881 cctgatatag acaccacaac cttatcataa tgaactccgc tcatcatctc agcacttcta
    35941 acagcttctt caatagattt agaagcaagc tctatattgg taatggcacc ttttttaacc
    36001 ccgttggttt tcgacttgga aaaaccaata atttttaatc catcttcatc tttttgagca
    36061 ataatggcac aagtctgggt tgagcctaag tcaattccta atatattcaa aatcaattcc
    36121 ctttataata aatttttatc ggatatatct ttttaagttc atcaacaagt tcttgcttaa
    36181 gctcatttgc ttttaaattt cgcaaatttt gttcaagcat agttttgtat tgttcaaatt
    36241 tatcggagtt catatctaat ttttgtttat ttattttata taatattgct ttattgtcat
    36301 taatgatcac ataagaacta ttttgatcgg tattaaatac attcatcaaa aaataagcaa
    36361 attcagaatc atttaatatc ttatcactaa gctttacact ctcgcgagaa ctatctcgac
    36421 ttacaaagcc tatatcatcg cctttaaaat ttactaaact atttttagct ttttcttcta
    36481 aattttttct agcttgttcg cttaaataca taggtaaaac ttcttctcta gcttcttcaa
    36541 aagttttatt tcttatagga tctactttat ttagtttaac tatgatatat ccgttattat
    36601 aaggtgctgg tcgtaaaaca tctccatttt tagctttatt caaaagatca attggataat
    36661 aaacatcaga ttcactaata ttttgatctt tttgaaaatt atctttcccg ttttttaaat
    36721 ctaaaaattt agcattagcc acattcttta gttgtattaa ggcgtaatct ttagcaactt
    36781 catttttagc agactgaaaa tccatcactt tacctgcaaa atctttatat tttagtttat
    36841 tttcatcttg attataaaat ttttctaatt ctttgtcgtc aattttctca ttgctaactg
    36901 acaaaaaata agttgaaatt tcatatattt ttttagtttt ataatcttct ttatgttcat
    36961 tccaaagctt ttttaaatcc tcttcattaa tcttaatatt ttttttgtca taatcaattt
    37021 ttgcaatact taaagcatct tgcatgaaat aactagaagc taacattttt aattcttcat
    37081 ctttgctagg aatattaaaa atttgattaa gtttatcggt aattacttca tttgcaagtt
    37141 gtgtttcata atcttttgga gttaaattat tggcatttaa aagttcataa taaattgttt
    37201 tgttaaaatc ccctgtagga tcttgaaatt ctctagtatt tgcaagtttt tgtaaaattt
    37261 cattctcgtt tacgccaata cccaaatctt tggcaaaatt taacaaaagc ttatcttcaa
    37321 caagggagct taaagctata tttttaatgc ctagttgctc agcattttct ggagttaaag
    37381 caccattgct aatttgatta taataactta aaatttgtct atatctagta tcaaattcgc
    37441 taaaacctat cttttcattt cctacggttg caacactcga acttctattg agattaaaat
    37501 cataagcacc ccaacctaaa aagccagcgc caacaaaagc tatagtacta acccatatag
    37561 taacaacaag atattttttg tgatgttgca tccaagtaag catatcattc cttgattaaa
    37621 tttaaactag atattgtatc gtagaagtgt ttaagtggag tttaattata aaatttttac
    37681 caaaaaatat ttgttcttta aattttatga tttttacaat gaaatttagt tataattata
    37741 gtttataaaa atttattagg attgattttg gaaattcctc atatcccagt tttgcttaat
    37801 gaagttcaag agatttttaa aaatcttaaa acaggttatt ttttagactg cactttagga
    37861 tttggcggac atagtgaagc tttgcttaaa aatcatcctg atcttaaatt cattgcttgt
    37921 gatcaagatc aacaagcttt agaattttct aaaaaacgtc ttaaagattt tcacaatagg
    37981 ataactttta tacaaagtaa ttttagtgaa gttttagaaa aaatttcata taaagaagaa
    38041 ttaagaggta ttttagcaga cattggagtt tcttcatttc aacttgataa taacgaaaga
    38101 ggttttagtg taaattctga ctttttggat atgagaatga atcaaaactc caaaatatcg
    38161 gcttatgaga ttattaatac ttatacaaaa gagcaattaa cttccatttt taaagattat
    38221 ggagaattgc acgatgcaca ttttattgct gaaaaaattt gcctagaaag aagtaaaaat
    38281 ccaatcaaaa gcgccaagga actttatcaa atcataggaa aaggcaaaca aaatcataga
    38341 aaaatttcca aagccacttt agcatttcaa gccattagaa tagaagtaaa tcaagaactt
    38401 aaagtgctta aagattttct tgggcattta gaaaatttaa aaccaaaaaa ttgcatttta
    38461 gcaatcatta gttttcattc tttggaagat agaatagtaa aaaatttttt caaaaaatgg
    38521 tcaaaaaact gcatttgtga tgaaaaaata atgcgttgcg aatgtggaaa taaccatagc
    38581 ctagggcaaa taataaccaa aaaagctata agtgcaagca aggaagaact tttaaaaaat
    38641 tctcgctcta gttgtgctaa aatgcgggct ttttatttta ataatttgga caataaataa
    38701 tgctagaaga tgattttata aaagaacgcc aaaacatacg ccaaaaaatg ctgaaatttt
    38761 ctcgcgctat aaatcaaggc aaaccgcttg atgatgattt aagagatgaa atttctagcg
    38821 atgatatttt aagacgtcgt tttaaaaaaa agactcctaa taaattctta gaagaactcg
    38881 atgaagagta tgagtcaaaa catactaaaa aatcaaatat atatttaaaa gaagatctga
    38941 tcaatgttaa attagaagaa aagcaatctc ttgctaaaaa atttttttcc aaaatgaaag
    39001 aaaggaaaaa agaagaaaat aaaaaaacta aaaagatttt ttcgtttgga agaaaaaaaa
    39061 taaacaagat aaaaaatatt caaaccaaac caaaaattca aacaaaaaat gatcaaaacc
    39121 ctatccaaga taaaaaagaa aaaaaagaat ccataaaatc tatagaaaaa attcaaaaaa
    39181 ccgaacctaa gatacaaaat tctcaaacta tagaaaaacg acctgatatt aaaaaacaac
    39241 ccgatattaa acaaagtttg gaaaatttac aaaaaaaaat aacaccacaa gaaaataaac
    39301 aagaacttcc aaaaccatct aatcaagctc aagaaaaaca acaaaatgat gaagatgctc
    39361 aaaaggcaaa aaatgtttta ctagaaggct tctctaatgc caccaaagaa gatagaaacc
    39421 taaatttcaa tcatcttctt tttgcggctt tacttgttag ttttgcgtta tttttatttg
    39481 ctccacaaat ttatattaga aatcaaattt attatcttag tagagaaatt gctacattaa
    39541 gaacagaaga aagcgtttta aacgaagaaa ataaagattt aaaaagaaga cttgaaaata
    39601 tgcgattcca aaatcaaatt ttagattatt tagaatgaat aatcttatct aaaacatact
    39661 gctctaaatt tgcttttgga atttcttctt ttaaggcttc cttataaatt tcacctgcca
    39721 ttatagagta tttttcataa gcaaaataag ggaaatgcaa agcccaagct ttttgtatta
    39781 ttttttttga gattattttg cgagtataaa ctttaaaaat atcatatcct ataaatacac
    39841 aagcagtaac cataacagca ctcactatgc ttatatgaaa gtcaagtttt gttaaaaaat
    39901 aatgagtaat taaaagcaat ggtaacaaaa ccacagcaca aaaaacacca aaataaatat
    39961 aagaatttag aattttgaaa ttaaaattta gcttagaagg atctacaagc ataccgtcat
    40021 taaaaagtgc atttgcctct aataaatcct tcactaaaac aggttgttct gatactttaa
    40081 ataaaaaacg aaggctaaat tctttaaatt ttttcataat ccacgcttta ttttttaatt
    40141 aaaattttat ctaaacaaaa ttaattttta ctaaatataa tcctctttca attgcttatt
    40201 aattcttctg tgattctggc tatttctaat tcttcatctg taggaataac aagcacttta
    40261 actttagaat ttgcatgatt tatcattctt tcgcccgaaa tcctttgttt gttaagttca
    40321 aaatctaact cgataccaag atgagctaat ctctcacata ctttttgtcg aaccaaacta
    40381 tcattttctc ctatgccacc tgtaaaaata atagcatcgg tttttggcaa cacagcaaag
    40441 taggatccta tatatttaac aagacgataa caaaacatat caagagccaa gcgtgcttta
    40501 tcattacctt gttctatctc tctttctata tctctaaaat cattataacc gcaaattcca
    40561 tatactccac tttttttatt catcagtgta tctatttctt ctatggttaa acccttaaga
    40621 tgactaataa aaggtaaaat agcaggatct aaatctccac aacgcgttcc cataacaagc
    40681 ccttcaagcg gagtaaatcc catagaagta tccacactct tacctttttc tatagcacat
    40741 acacttgcac catttccaag atgagcagag ataacattta gttcactttt atctttttca
    40801 agcaaacttg ccgctctaga actgacaaaa gcatgagaag tcccatgaaa accatatctt
    40861 ctaatattat gcttatcata aaaatcataa ggcaaagcat acatataagc aaaatcaggc
    40921 atagtacgat gaaaagctgt atcgaaaata gccacatttg caacactagg tgcagcttta
    40981 atcattgttt ttatacctgc taaatgggca ggattatgca aaggagcaaa aatactaacc
    41041 ctatctatct ctttaagaac atagtcatct actaaacaat gctcacttaa atttcttccc
    41101 ccgtgaacta tacgatgacc acagccatca agagcattta aatccgctaa aattcctgat
    41161 tctttaaaaa gctcattgac tatactaagt ccttcttcgt gattatttat cattaattct
    41221 ctttcaaaac tttcattatt taaaacattt tttaatataa cttttgaatt ttgctctccg
    41281 attttctcta ctaaaccact cgctttaacg actttattat caaaaaattt aaatttaatc
    41341 gatgaagaac ctgaatttaa aactaaaatt ttcatttatt attcctttct attgagcttg
    41401 tatagcactt aaaataacag tatctacaat atcatctacc aaacatccac gacttaaatc
    41461 attaacaggt tttttaagac cttgcaaaat aggaccgatt gctaaagcat tagcagttct
    41521 ttgaactgct ttgtaacaaa tatttgctgc attaagatca ggaaaaatat atacatttgc
    41581 atggcctgct atcttagaat ttggcatttt ctttgctgca gtctttggat cataagcgca
    41641 atcaaactgc ataggaccat ctatatttaa ctcagggtat ttttctttag caatctttaa
    41701 tgcttctttt acaagatcta cgctttctcc cttaccgcta tcaccactag aataagaaag
    41761 caaagctatt cttggttcaa gtccaaaaga tttagcagtc atagcactta cataagcact
    41821 agttgcaagc tgttcagcag ttggacttgg atttacagca caatcagcaa aagctaaaac
    41881 ttgatcttca agccccataa agaaaattcc cgaaacagaa ctaatacctt ctttggtttt
    41941 aataagctgc aatgcagggc gaatcgtttc agccgtagta gttgatgctc cactaaccat
    42001 agcatcagct tttccagtat gtataagcaa agttccaaaa taagttttat cctgaactag
    42061 catcttagcc tcttctaaac tcattccttt agattttctt gcctcataaa gaatggaagt
    42121 aaattcttga ttatattctg aattgagcgg attcataatt tgtatagtac ttaaatcaag
    42181 acttaatcta gtagcatctt gtttgatttt ttcctcatca cctaataaaa taagatcaac
    42241 aactttactt tttaataaaa tttcagcagc ttttaaaatt ctctcatcat tactttctgg
    42301 caaaacaaca gtttttttat tttttacgct ttgtttaatc aattcatatt taaaacgatg
    42361 tggagttata aaatcatact cttcaagctt ttgcacttcc tcaaaattaa aattttcatt
    42421 aatcaaaaca taattacgac catctagggc atgatcgaaa tatttttgag ctataagttt
    42481 atcctcatcg ttaataatag cagcgatagg ggtattaaga tttttagcca attttatact
    42541 aagatcaaat ccatcaagta ttccaaattc gcaaaagcta tttacaagca caaaatcgta
    42601 tttgcgtttt aactcttcgt attcttctaa aataacatta aaaaaattat gaggatcttt
    42661 gctaaattcc tccattgctt ctctaaaggt aaaaccataa gcgcttttta cagtttgatt
    42721 gatattaaat tcttccaacc aaccttgcaa aacagggacg cgatgtatgt atattacagg
    42781 gcaataaatt gcgatatttt tgtaaatttt gctataattt tt
//
LOCUS       DAEDTT010000003        29424 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.003, whole genome shotgun sequence.
ACCESSION   DAEDTT010000003 DAEDTT010000000
VERSION     DAEDTT010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29424
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.003"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..509)
                     /locus_tag="KLC54_000115"
     CDS             complement(<1..509)
                     /locus_tag="KLC54_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HBD9176535.1"
                     /translation="MADAHENEQRKGFWEFLQALKKGKISTPQLILMGDIFDLLIGEI
                     SATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFFKRVKIFNLQEQPIKLNLHTS
                     KGNNLVLNNAFIKLAHGDIFLPPLLQFTLKTLRNHYLLIFLNFLNIITCNFISNKILQ
                     NQNKKNLFY"
     gene            complement(546..1031)
                     /gene="greA"
                     /locus_tag="KLC54_000116"
     CDS             complement(546..1031)
                     /gene="greA"
                     /locus_tag="KLC54_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HBD9176536.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIIDLDTEKES
                     KYTLVGICEGDLDKGYISIASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            complement(1043..2137)
                     /locus_tag="KLC54_000117"
     CDS             complement(1043..2137)
                     /locus_tag="KLC54_000117"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HBD9176537.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELINLSFAQKINGILCIDSPAFNI
                     PFAKALKKAGSKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYV
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGE
                     KILCIPPFNLEKLEIYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     TYKAKAIDIFIAKLFVKLKHIGLANIFCDFAKKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILSEI"
     gene            complement(2234..2986)
                     /gene="peb3"
                     /locus_tag="KLC54_000118"
     CDS             complement(2234..2986)
                     /gene="peb3"
                     /locus_tag="KLC54_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HBD9176538.1"
                     /translation="MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVI
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            complement(3250..3684)
                     /locus_tag="KLC54_000119"
     CDS             complement(3250..3684)
                     /locus_tag="KLC54_000119"
                     /inference="COORDINATES: protein motif:HMM:NF019310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD9176539.1"
                     /translation="MAWMDTFVYMVRFGLISWLPIYLLETKGFNKEQIGIAFWLFEWA
                     VIPSTLLAGYISDKIFKGYRMPPAIGAMVIIFFMIIGYFTSNNLYMVIFFAAMAGCLV
                     YIPQFLASMQTMEVVPAFAVGSCVGLHGFMSYVVGASFGTKA"
     gene            complement(3728..3907)
                     /locus_tag="KLC54_000120"
     CDS             complement(3728..3907)
                     /locus_tag="KLC54_000120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate transporter"
                     /protein_id="HBD9176540.1"
                     /translation="MNHFYTPAACAVIISLYALYAVKGNPKNEGLVDITEINEMRGIK
                     TEEIKAIETPKFKQF"
     gene            complement(3911..4420)
                     /locus_tag="KLC54_000121"
     CDS             complement(3911..4420)
                     /locus_tag="KLC54_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009649861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD9176541.1"
                     /translation="MRTWSLSGVFIGYMGYYLVRNNITLSTPFIQNQLNLSKSDIGTI
                     TGSMLIAYGISKGAMSVISDKADPKIMALGLILCALVNVLLGFSNSFYAYVGFVIALG
                     VFQGMGVGPSFITLANWYPKKERGIYTAVWNISHNIGGGIVAPIVSLSGFALAALLGV
                     SMANFNETY"
     gene            4675..5451
                     /gene="surE"
                     /locus_tag="KLC54_000122"
     CDS             4675..5451
                     /gene="surE"
                     /locus_tag="KLC54_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HBD9176542.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            5441..6100
                     /locus_tag="KLC54_000123"
     CDS             5441..6100
                     /locus_tag="KLC54_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HBD9176543.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAKK
                     S"
     gene            6084..6542
                     /locus_tag="KLC54_000124"
     CDS             6084..6542
                     /locus_tag="KLC54_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HBD9176544.1"
                     /translation="MLRKADIKDLNACLSLFEQSVKTLCAKDYTKDQICAWIKIDRQQ
                     WEEKFKYDEIFVYEKRGKIASFISVKQEQKLLDLLFTHPDFVRQGLAQNLLDFILKTY
                     LHNEIYTFASLSAKDFFLKNGFELIRENKVIKEGQNLKKFLMKKDVVYKN"
     gene            complement(6652..7032)
                     /locus_tag="KLC54_000125"
     CDS             complement(6652..7032)
                     /locus_tag="KLC54_000125"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HBD9176545.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(7029..7877)
                     /locus_tag="KLC54_000126"
     CDS             complement(7029..7877)
                     /locus_tag="KLC54_000126"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HBD9176546.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(7888..8712)
                     /gene="panB"
                     /locus_tag="KLC54_000127"
     CDS             complement(7888..8712)
                     /gene="panB"
                     /locus_tag="KLC54_000127"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HBD9176547.1"
                     /translation="MRKSMISFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            8932..9705
                     /locus_tag="KLC54_000128"
     CDS             8932..9705
                     /locus_tag="KLC54_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HBD9176548.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
     gene            complement(9790..10674)
                     /locus_tag="KLC54_000129"
     CDS             complement(9790..10674)
                     /locus_tag="KLC54_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HBD9176549.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(10671..11345)
                     /gene="modB"
                     /locus_tag="KLC54_000130"
     CDS             complement(10671..11345)
                     /gene="modB"
                     /locus_tag="KLC54_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HBD9176550.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(11338..11739)
                     /locus_tag="KLC54_000131"
     CDS             complement(11338..11739)
                     /locus_tag="KLC54_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HBD9176551.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(11736..12485)
                     /gene="modA"
                     /locus_tag="KLC54_000132"
     CDS             complement(11736..12485)
                     /gene="modA"
                     /locus_tag="KLC54_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HBD9176552.1"
                     /translation="MKKFVVFFGILLFVSCLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(12536..13222)
                     /gene="bioC"
                     /locus_tag="KLC54_000133"
     CDS             complement(12536..13222)
                     /gene="bioC"
                     /locus_tag="KLC54_000133"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HBD9176553.1"
                     /translation="MNFLKAKDYEKHAKVQDFMGLKLCEILKDLKISHFEKVFEFGCG
                     RGELSKKLQNFITFDEYLKNDILDFKENSSILIFDMNEIAKQDLSKEKFDLIVSNATL
                     QWLDLKRIIPSLRDMLNQNGILLLSTFAEQNLKEIKQSTGFGLNYFSLNELEQIFKVY
                     FNEVKITQELIKLSFDNALDVFRHLKLSGVNSLGFYPLNKGFLKEFEEKFQNKLTYHP
                     VFILCKNDIK"
     gene            complement(13219..13830)
                     /locus_tag="KLC54_000134"
     CDS             complement(13219..13830)
                     /locus_tag="KLC54_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HBD9176554.1"
                     /translation="MKYEFLCKNPDSKKLIVAFGGFASHPSHFSHLKSDKNVILFYDY
                     ENFDLNFNFKAFDELFLIAFSMGVCVANRLLKELNFKQKIAINGTNLGIDKSKGIHPT
                     IFKKTLQNFKLEHFKEALFKERKSLAKDFIFKDEKALKIELEKLFDFALVKQEENLLW
                     DKVYSSKKDEIFPPNALKNAFSKLIFLNEPHFAFFHFKTWDEL"
     gene            complement(13827..14969)
                     /locus_tag="KLC54_000135"
     CDS             complement(13827..14969)
                     /locus_tag="KLC54_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HBD9176555.1"
                     /translation="MKLEKILQDLEQNRNLRTLTPLKHENKFVYKQDRKLLNLAGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSGNFEIYEELESFLKAKFKDKEILHF
                     NSGYHLNISCIAALSSVSKTLFLADKFIHASMIDGLRLGGVDFFRFHHKDMNHLESLI
                     QKHYENYENIIVLSEALFSMDGDFSDFKTLCELKKRYDKIKLYIDEAHSVGCFDEEGL
                     GLVKKLALENEVDFLVFTFGKALASMGACMICEEKYKKFFINKARAFIYSTALPPINV
                     AWTQFIFKKMPYFKKEREKLELLSTFFKSKLQEKNHTILGDAYIICLLLGENKKALEI
                     SQKLQKAGFFAPAIKEPTVPKNTARIRFSLHAGLNIEELERIIELL"
     gene            15037..16320
                     /locus_tag="KLC54_000136"
     CDS             15037..16320
                     /locus_tag="KLC54_000136"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HBD9176556.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKFSARLCEKV
                     GHDFNKCFYADNGSSAIEVALKMSFHYHLNKGLKKNKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKHSSEICAFILEPLVQCAGNM
                     HMYEAGFIDEAIKLCHDFNVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTKDEIYNAFYAPYSDQKAFLHSHSYTGNTLACAAANAVLDIFENENILE
                     KNQILSTFIQQEFSKLKKFDFLGNFRTCGMISAFDILSHKHERMGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVVESLEQIFNEF"
     gene            complement(16307..16912)
                     /locus_tag="KLC54_000137"
     CDS             complement(16307..16912)
                     /locus_tag="KLC54_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HBD9176557.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSENLLIELAGGLFSPM
                     DENYTMIDFMALNKRASILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DEFIKNYAKIPIINLDFFDENSILNEDFKEQMQEILQLKIH"
     gene            complement(16922..17236)
                     /locus_tag="KLC54_000138"
     CDS             complement(16922..17236)
                     /locus_tag="KLC54_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HBD9176558.1"
                     /translation="MEWFYLFLATTCEIFGVVIMKELVSTKNKLYLFALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLIAVIIACTVGLKF
                     LS"
     gene            complement(17239..17577)
                     /locus_tag="KLC54_000139"
     CDS             complement(17239..17577)
                     /locus_tag="KLC54_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HBD9176559.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFSEAVSIVKLVLIAILLLSI
                     IALKWVSKEA"
     gene            17711..18247
                     /locus_tag="KLC54_000140"
     CDS             17711..18247
                     /locus_tag="KLC54_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HBD9176560.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            18244..18789
                     /locus_tag="KLC54_000141"
     CDS             18244..18789
                     /locus_tag="KLC54_000141"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HBD9176561.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHTKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            18791..19849
                     /locus_tag="KLC54_000142"
     CDS             18791..19849
                     /locus_tag="KLC54_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HBD9176562.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKLQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDALKINLYKFVFTPFF
                     APFLMLIMYYFFPVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
     gene            19893..21101
                     /gene="lysA"
                     /locus_tag="KLC54_000143"
     CDS             19893..21101
                     /gene="lysA"
                     /locus_tag="KLC54_000143"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HBD9176563.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYAKNSSFLEPVGVHFHIGSQLLDISPIHEAAGIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYEKDECEPDLYNYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQAQESLCDVVGGICESGDFFA
                     KARSLPSTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFENQ
                     IALEEKFLKA"
     gene            21103..21870
                     /locus_tag="KLC54_000144"
     CDS             21103..21870
                     /locus_tag="KLC54_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HBD9176564.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYVIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKYLLKPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAVLVASYDDFKFKDFASMIEFARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRKQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKELKCQI"
     gene            21858..22931
                     /gene="pheA"
                     /locus_tag="KLC54_000145"
     CDS             21858..22931
                     /gene="pheA"
                     /locus_tag="KLC54_000145"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HBD9176565.1"
                     /translation="MPNLEEFRNKIDTVDDKILELLNERMTYVKSIGELKQSSGGTIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSKIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            22921..24015
                     /locus_tag="KLC54_000146"
     CDS             22921..24015
                     /locus_tag="KLC54_000146"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HBD9176566.1"
                     /translation="MKFNEFLNHLSNYEPGKDIEVIAKEYGVKEVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHAKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHDLNEFKKLYEAHKDEIKLIFLCL
                     PNNPLGECLDASEVTKFIKGVDEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIINAFYKLRAPFNVSNLALKAAVAAIDDDEFTK
                     KTLENNFSQMQLYKEFAKKHNIKIIDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            24067..25749
                     /gene="fliF"
                     /locus_tag="KLC54_000147"
     CDS             24067..25749
                     /gene="fliF"
                     /locus_tag="KLC54_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HBD9176567.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            25749..26777
                     /gene="fliG"
                     /locus_tag="KLC54_000148"
     CDS             25749..26777
                     /gene="fliG"
                     /locus_tag="KLC54_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HBD9176568.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            26785..27615
                     /gene="fliH"
                     /locus_tag="KLC54_000149"
     CDS             26785..27615
                     /gene="fliH"
                     /locus_tag="KLC54_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HBD9176569.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENANISLNDEKAVEENQAIAPTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFAKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            27608..>29424
                     /locus_tag="KLC54_000150"
     CDS             27608..>29424
                     /locus_tag="KLC54_000150"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HBD9176570.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFACVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHAQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDAKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIAFRYPRGSFILDKEFNPCEIKLGKAQWLVKNNSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDVNS"
BASE COUNT        10409 a         4304 c         4763 g         9948 t
ORIGIN      
        1 tgataaaaaa ggtttttttt gttttgattt tgaagaattt tatttgaaat aaaattacaa
       61 gtaataatat ttaaaaaatt taaaaatata agcaaataat gatttcttaa tgttttaaga
      121 gtaaattgta aaagaggtgg taaaaaaata tctccgtgag ctaattttat aaaagcatta
      181 tttaaaacaa gattattacc tttacttgta tgcaaattaa gctttatggg ctgctcttgt
      241 aagttaaaaa tttttaccct tttaaaaaaa caagaaagat taaaatcatg attgccttct
      301 aagtagataa tttcaatttt taaggccaat tcttctaaaa gttctatgta aggtttagca
      361 aattcatgtg tagcagagat ttcgcctata agcaaatcga aaatatcacc cataagtatg
      421 agttgagggg tggaaatttt accttttttt aaggcttgta aaaattccca aaatcccttt
      481 ctttgttcat tttcatgagc atccgcgatt aaaatcgccc cattttgtag taaaattttt
      541 tatccttaaa atttcaaagg ctcataattt atagaaagga tttcaaattc actctcacct
      601 tttggcaaac gcactttaaa atcatctcct tcttttttcc caagcatagc ttttgctatt
      661 ggagatgcga tggaaatata acccttatct aaatctcctt cgcaaattcc tactaaagta
      721 tatttacttt ctttttctgt atccaaatct atgatcacaa cacttgaacc aaatttcaca
      781 ctatcatgtt catagcttga aggatcgatc acttgagctc ttgctagcaa gtcactaagc
      841 tccgcaatac gactttctat caaagcttgt ttttctcttg cagcatggta ttccgcattt
      901 tctttcaaat ccccatgact ccttgctgta tcgatttcta ttacaacggc agggcgttga
      961 ttgtctttta aatcttttaa ttctgcggct aatttatcat agccaaattg actcattggt
     1021 tctttttgca tgatttatcc ttttatattt cgcttaggat ttttgctaaa tttttagcac
     1081 ttccaaattg taaatattct tttaaaaaat caactttagc aaaaaatgcc ttataatcat
     1141 atttattgta agcttcatat aaatttaaaa cattgacttt atcttgtaaa aattcaggat
     1201 ttaaagcttc ttttttagca aaatcacaaa aaatatttgc aagtcctatg tgttttaatt
     1261 ttacaaaaag ttttgcgata aaaatatcaa tcgcttttgc tttgtaagta agaacaaaag
     1321 gagttcccac taaagctgct tctaaagtag ctgttccact acaaataaag gcaaaatcag
     1381 cttttttaag cacttttgga gtgttacttt ctattttaaa ttcactaata tcaccataaa
     1441 tttctaattt ttcaagatta aacgggggga tacaaagaat tttttcaccc ttaaattttt
     1501 gagaaagttc tttaaaaata ggcattaaac gcctaatttc actacgcctt gaacctggta
     1561 aaaaggctat agttttttca tcatcttttt ttgaaaatgt atgattaata tcttcttgat
     1621 ttttaaattc ttttatctca tctaaaagcg gatggcctac ataagtgctt ttgttaaaaa
     1681 actgattatc aaagggtaaa atagaagcta aaatatcaaa atgactttct atgataggta
     1741 tgcgaccttt tttccatgcc caaacttgag gtaaaatata ataaatgcgt ggaattttac
     1801 tgcctgcttt ttttaaagcc ttggcaaaag gtatgttaaa agcgggcgaa tctatacata
     1861 aaatcccatt tattttttga gcaaagctta aatttataag ttcttttata gctttttttg
     1921 ctttgaaaat caaaggtaaa acttctataa aacccatagc actaaactca tgtgagctat
     1981 aaagtggttt agaatttaaa tcaaattctt tacataaact ctcatcataa atcccatgaa
     2041 gttcaaattc accaaaatct tttttataag cttttaaaac ttcttttaaa tgcaaatttg
     2101 ctgaaggctc taaagcacaa actaaaaagg ttttcaaaaa atttccttat caatatttta
     2161 aacattttat cttattttgg cttaattaaa agaagttatg caagaataca cgctaaaaag
     2221 cgtgtatgaa ggtttattct ctccagccgt attttttaaa aatttcttta gcttccttag
     2281 aacttaaata agcaataaaa tcttgtgttt ctttgctcgc accttcttta gctatcacat
     2341 taaaagttct ataaacaacc aaatcttttt ctatagctac ggcagttcct atgtcaggat
     2401 tgctttttga ccagtcaatc caagtgatcc aagcatcggc ttgatcttgt gcgaaaagct
     2461 ttcttgcact tccactattt ggaacaaagg ccacgatatt gtttctaaaa ttttgtatgg
     2521 tttttatatc ttgagttcta cctatcatat cttcccaaac tccagttcca gaagtattgc
     2581 tctttccagc accttcaggc acaacgattc ttactttttt attagccaaa tcttttaaac
     2641 ctttgatttt taaaggattg cctttttgag taagtatgat ggcttctcta aaatataaag
     2701 gcttgatttt actcacatta aaatcttttc caaaatcact cgctatagct aaagccgatt
     2761 gatctgaagc gccaaataaa atatctgcat cttttttagc cttttcaaac caagtcgctt
     2821 gagggccaaa atttacattt actttaacgc ctgttttttc gctatatttg tttgctatat
     2881 cttttaaggc cgtgtgtggg ccacctggtc cgtaaaggtt tacatctgca tttgccatac
     2941 taaaagctaa ggcacatgca ccaaataaag taataatttt tttcatagta tttcctttta
     3001 tgataaattt ttattgattg aaagtaagat tttagaaatt gtatgttaac aaatagttat
     3061 aatgtaacaa aaatattatt aaaatctaac ttttgcttgg tatttttgca agcaaaagtt
     3121 aaaattgtta ttgatgcttc tttttagcgc taaaatgaca taaagtagaa caaagtatac
     3181 aaagaataca agcactaagg agcatgataa gaccagcatt ccaactacca tagtaatcca
     3241 cagcccaacc tatgcttttg ttccaaatga agcgccgact acataactca taaagccatg
     3301 aagtcctaca caagatccta ctgcaaaagc aggaacgact tccatagttt gcatacttgc
     3361 taaaaattgt ggtatataga ctaaacaccc cgccatagct gcaaagaaaa taaccatata
     3421 aagattattt gaagtaaaat atccaataat cataaagaaa ataatcacca tggcgcctat
     3481 agcaggaggc attctatagc ctttaaaaat tttatctgaa atatatcctg caagtaaagt
     3541 agaaggtata acagcccatt caaaaagcca aaaggcaata cctatttgtt ctttattaaa
     3601 gccttttgtt tctagcaagt aaataggaag ccaagaaata agcccaaaac gcaccatata
     3661 aacaaaagta tccatccaag ccacatacca agcatttttg tttttaagta cataatgata
     3721 aaaaatttca aaactgctta aattttggag tttctatagc tttgatttct tctgttttaa
     3781 tccctcgcat ttcattgatt tcagtaatat caaccaaacc ttcattttta ggatttcctt
     3841 taactgcata aagcgcataa agactaatga taactgcaca agcagcagga gtataaaaat
     3901 gattcatgtg ctaatatgtt tcgttaaaat ttgccatact cacacccaat aatgctgcca
     3961 aagcaaaacc tgaaagcgaa actataggag caactatccc gcctcctata ttatgtgaga
     4021 tattccaaac ggccgtgtaa attccccgct cttttttagg ataccagttt gcaagagtga
     4081 taaaagaagg acctaccccc ataccttgaa aaaccccaag cgcgataaca aaacctacat
     4141 aagcgtaaaa agaatttgaa aaaccaagta aaacatttac aagagcacat aaaataagac
     4201 ctaaagccat gattttagga tcagctttgt cgcttataac gctcattgca cccttgctaa
     4261 tcccgtaagc tataagcatt gagcctgtga ttgttccgat gtctgattta ctgagattaa
     4321 gttgattttg tataaatgga gttgaaagag tgatattatt tcgcacaaga taatatccca
     4381 tatatcctat aaaaacccca cttaaactcc aagttctcat tttgtaatat ctaggtaaaa
     4441 tttcctaaag aggaaattta atagcttttg ccttaggttt gaaaaaatca aacatattta
     4501 aaccatcctt actaacttta tatttttata gtttaaataa tgttaatcga tataaaataa
     4561 aaaaataatt aaaaataata cgaaatttat ataatttaaa aattaaaatt ttatactatg
     4621 aagctttaaa aaaatatgtt aaaatccaga tttttatctt ttgcaaggaa gacaatgaaa
     4681 gaaattctta tcactaatga cgatggttat gaaagcgaag gacttaaaaa actcattaag
     4741 atgttaacaa aagaatttaa agccaagatc accatagtag ctcctgctag tgaaaaatca
     4801 gcttgttcgc actctataac cctaaccaaa cctttgcgtt ttgttaaagt gggaaaaaga
     4861 ttttacaaac ttgatgatgg cactccagca gattgtgttt atcttgcttt gcatgcttta
     4921 tacaaaaagc gtttgcctga tcttgtaata agtgggatta ataaaggtgc taatgtaggc
     4981 gaggatatta cctactcagg aacttgcgca ggagctatgg aggcggtttt acaaggaatt
     5041 cctgctatcg ctctttctca attttataaa aaaagcgaaa aagaactaga ctataaaaat
     5101 gctttacaaa ttaccaaaaa aatcattcaa aatatttttg ataaaggttt tcctttggaa
     5161 aaaaaagaat ttttaaatat caattttcct gcaaaatcaa aaatcaaagg cattaaaatt
     5221 tgtaaagcag gcaaaagggt ttataatttt gaagcccatt caaatgtcaa tccgagagga
     5281 gtagagtact attggcttgc agcggcgaat ttagactttg aagatgagaa aaatagcgat
     5341 attgccttac ttaaaaaagg ctacgctaca ataacaccta taatgctgga tcttacagct
     5401 tatgaaagaa tgaaaaaagt taaaaaatgg ttaaaggcaa atgatgaatg atagatttac
     5461 acgtataaaa tggctagttg gagaagaaaa atttcaaaaa atttcacaaa caaaagtttt
     5521 ggtttgcgga cttggtggag tgggtggaat ttgcgttgat gcgctttatc gtagtggttt
     5581 taaaaacctt actttaatcg atgcggataa atttgaaatc actaatcaaa atcgccaaat
     5641 tcatagcgaa aatataggcg aagaaaaggc taaagtattt gaaagaattt ataaggttaa
     5701 aggtatagtc agtaaaatcg atgaaaattt tttaaaaaat tttgatttaa gcgagtttga
     5761 tcttatcata gatgccattg atgatattcc tgcaaaagta gctttggctc atcttataga
     5821 ttttaaaaaa caaattttta tctcctcaac aggtggagct agaaagcttg atccaacacg
     5881 cattaaaact acaagtattt ttaaaactca cggcgatgct ttagcgaaaa aatttcgtta
     5941 tgagcttaga aaatcaggct ttaagggaaa ttttgatgtg gtattttcag atgaggaagc
     6001 gcattgtaaa gatcttggat cttttatggg tgtgactgca tcttttggtt tagccctagc
     6061 cagcttggca ttaagaaaag ttcttgctaa gaaaagctga tattaaagat ttaaatgctt
     6121 gtttgtcgct ttttgagcaa agcgtaaaaa cactttgtgc taaggattat acaaaagatc
     6181 aaatttgtgc ttggattaaa attgatagac aacaatggga agaaaaattt aaatatgatg
     6241 agatctttgt ctatgaaaaa agaggaaaaa tcgcaagttt tataagtgtt aaacaagagc
     6301 agaaattgct tgatttgctt tttactcatc ctgattttgt tagacaaggt ttagcacaaa
     6361 atttacttga ttttatttta aaaacttatt tgcataatga aatttacact ttcgcatcct
     6421 taagtgctaa agattttttc ttaaaaaatg gttttgaact tataagggaa aacaaggtta
     6481 tcaaagaggg acaaaattta aaaaaatttt taatgaaaaa agatgtggtt tataaaaact
     6541 agaagttaag ataagcaaaa ataatggatt aaaagatata aaaatcattt ttttctatct
     6601 tagataaatg aatttatcta agatagaaaa aattacaaaa atagctagat gttagaaaat
     6661 agctccgtgt ttttcataat ttgttatttt tgtagcagtg ttattttcat ccacaaaaac
     6721 aacttttggt ttaaatgttt ttgcttcttc ttcattaaaa tcagcataag acatgatgat
     6781 caccttatct cccacttctg caagacgagc cgcagcacca tttaagcata caactccttc
     6841 ttcttgcgtg gctatggtat aggtttcaaa tctagcgcca ttattgacat tgactacttg
     6901 gactttttcg tattctaaaa ttccactcgc ttgcaataat ttttcatcta tacttatact
     6961 tcctatataa tcaagcctag cttctgttac gcttgcgcga tgtatttttg atttgagtaa
     7021 agtgatattc attttaatcc ttgtactaaa aaattatcaa tgagtcttgt ttttccaaca
     7081 aaagcagcca ccgctcctaa aacattatca gtgatatttt cgatattttc catggtgtta
     7141 aaatcgacta attctatata atcgattttg attagttttt ctttttctaa aatatctttc
     7201 atagcttgga tgatcttaga agtatttttt tctccctctc ggactaattt ttcagccaaa
     7261 aaaatgcttt gagatatagc tagtgacgct tttctttctt ctttgctaag atatacattt
     7321 ctagagcttt tagctaagcc atcttcttct ctaatgatag gacaaatttg aatttttaaa
     7381 tcaaaattta aatcatcaac catatgccta acgactacgc attgctgcgc gtctttttgc
     7441 cccatataga ctatatcagg gtttaggata ttaaaaaatt tagttaaaac cgtgcaaacg
     7501 cctctaaaat gccccggtct tttagccccg caaagtttat cagtgatcgt attcatatct
     7561 acataggtgc taaaattctt aagatacatt tgagttgcat cggggataaa aaccatatca
     7621 acgccattat cttgacacat tttaatgtcg cgttctaaat ctcttggata actagaaaaa
     7681 tcttcattag gcccaaattg cataggattt acaaagatac ttactataac cttatcttgt
     7741 gttttggcat gtttgactaa acttaaatgt ccatcgtgta aaaaacccat ggttggaaca
     7801 tagcctatac taagttgatg tgatttccaa tcttttacaa tttgttttgc ttctttgaca
     7861 gaagtaatga cttgcatatt tgtatcctta gtataattta tctaataatt catcatctaa
     7921 ataatcaaag ctgtgctctt gggaaggaaa aataccgctt ttaacttcat ctctatattt
     7981 ttcaactcct acttgaggat caattttatc aaaatgcttt acaaattttg ctttaaaatc
     8041 tttatttaaa cccaaaagat cgtgataaac taaaacttgt ccatcgcagt atttgcctga
     8101 acctatgccg attgttggaa tttctaaaat agagcttatt ttttgtgcta gttttacagg
     8161 cacacattct aaaaccaaca tacaagcacc cgcatcttgc acagcttttg catcatctat
     8221 aattttttgg gctgattgta aatctttacc ttgaacccta tagccaccta gcatatttac
     8281 agcttgtggg gttagtccta ggtgagcaac gacgggtatt cctgattggg aaatcaattt
     8341 aatcttactt gcgatttcta tacccccttc cacttttacc ccatttgcgt ggctttcttt
     8401 gataaatctt gaggcattta agatagcgtc acgatctgaa ctttgataag acataaaagg
     8461 catatcagca agtacgaaag actttttagc tccgcgagaa acagctttgg taaaaatcaa
     8521 catttcatcc atagtaacac ttaaagtatc ttgcatacca agtaccgtca tggctaatga
     8581 atctccaacc aatataatat ctatatcgct attgtctaaa attcttgcac tatgataatc
     8641 atacgcactt accatggtta ttttttcatt tttggccttt ttttccaaaa aactaatcat
     8701 actttttctc attttgcata cctcaatttt tagctataaa ataataagca aaaaactagc
     8761 atataatttt tcataaatag taaatgaatg ataaagtaag ttatatttaa tcgatggatt
     8821 gctttaatgg ttacaatttt agaaaatttc agttcatgtt aaaggatatt taaagaaaat
     8881 aaagctttaa aaagtatttt gtttaaaatt atttaaatag aaagatattt tatgaaaaaa
     8941 ataactttat ttttactttt cttaaattta gtgtttgggc aagataagat attaaataat
     9001 tggtttaaag agtataatac aagcggcact tttgtttttt atgatggaaa aacttgggcg
     9061 agtaacgact tttcaagggc tatggagact ttctctcccg cttccacttt taaaattttt
     9121 aatgctctaa ttgcacttga tagtggtgtg ataaaaacta aaaaagaaat tttttatcac
     9181 tatagaggtg aaaaagtatt tttatcttct tgggcgcaag atatgaattt aagttcagct
     9241 ataaaatatt ctaatgttct tgcttttaaa gaagtggcaa gaagaattgg tatcaaaact
     9301 atgcaagaat atttaaacaa gcttcattat ggtaatgcta aaatttccaa gatcgatact
     9361 ttttggcttg acaactcact aaaaataagc gctaaagaac aagcaatttt gctttttaga
     9421 ctttcacaaa atagcttacc tttttctcaa gaagcaatga atagtgttaa ggaaatgatt
     9481 tatttaaaaa atatggaaaa tttagagctt tttggaaaaa caggttttaa tgatgagcaa
     9541 aaaattgctt ggattgtagg ttttgtgtat ttaaaagatg aaaataaata taaggctttc
     9601 gcgctaaatt tagatattga taaatttgaa gatttatata aaagagaaaa aattttagaa
     9661 aaatatttag atgaacttgt aaaaaaagtt aaaaatgatg gctagtgagt atttcgtaaa
     9721 atgcaaaaat acttaattgt atgatttgcg tacacttaaa gtactcatta aaaaattaaa
     9781 tttttgctct tatttatcaa gttttcctac gatgataggg ttaaaggctt ttatggatag
     9841 caaaagcgta tcgccgattt ttacatcttg ataagctttt agaaattcct cttcactaag
     9901 agtgatttta ataatatctt gatttaaaag caaggttaaa accactaaaa tatcactttt
     9961 tttaatttct agcaaagttg cacttaagcg taattttgcg ctgatatttg aatgagtaaa
    10021 aaattcattt ttaggaaaat ctttaataat ttttccgttt ttaagctcta aaattctatg
    10081 acttaactta taaatttcag ctagatcatg acttaccaat aaagtactta ttttaaaata
    10141 ctctaaaatc ttggttaatt catcttgtaa attggcacgc attttaaaat ccaaagcact
    10201 caaaggttca tctaaaagca agatttttgg ttctcttgct aaagctcttg ctaaagctac
    10261 tctttgtgcc tgccccccac ttaaatgttt aggataaatt ttagctaaat tttcaagctt
    10321 cattaaggct aaaagctcgc taacctttgc tttagaacta gcggcatagg cgatgttttc
    10381 ttttatattc atatttggaa aaagcgcata atcttgaaaa acaaaaccaa tttttctttt
    10441 ttgtaaagct aaactaaaat tttttgaaga atcaaaccaa agttcattat ctacttctat
    10501 acgccccaat ttaggcttta taagtcccgc tatgattttt aaaagagtgg tttttcctgc
    10561 tccactttcg ccaaaaagtg cagtaatttt tcctgattct atatcttttt taaaatttaa
    10621 atccagtctt cctttagcgg tattcatagg atgattgata tcaattctta tcattgaaaa
    10681 ctcatttttt tattgataaa ataaagacta aaaagtacta aaaaagaaaa aataaacaat
    10741 ataaaagcat attgatgggc taagctatag tttaagattt caagttcatc ataaatagct
    10801 atactagcca ctaaagtttc accttgttta tgtcctccta tcatcatcac gactccaaat
    10861 tcacccacag tatgggcaaa actcatcgca caagcactaa aaattcctgc tttagaatta
    10921 ggtaaaatca ctctaaaaag agtataaatt ttacttttac ctaaactata agaagcatcg
    10981 agcaaatttg gattgatcga tgaaaaggca ctttgcaaag gatttaccat aaaaggcaaa
    11041 gaaaaaatca aagaagcaaa aacaagacct tcaaaactaa aaaccaaaga aagattaaaa
    11101 tattctttta aaacttgccc taaaaaacta ttagccgaaa aagttacaag caaataaaat
    11161 cccaaaacac taggaggtaa aatcaaaggc aaggaaataa agctttgaag gattgtttta
    11221 aaaggaaaac gcacaaaact taacaaataa gctaaaaaaa caccgataaa aaaaaggata
    11281 aaagtcgtga taaaagcaag tttaaaagta agataaaggg tttgtaaaaa agctggatca
    11341 agcactatga ctccttaata caatatcatt tgcttttaca aaacaaagcc attcttgatt
    11401 ttcacaaatt tcaagttcta aagctttttc tttggtgata atactagaaa gttcattacc
    11461 tttaaaatca aaaaatacct gatataaaag tttgcctttt ttaatttttg taattttagc
    11521 taaaaaagaa ttttcaacac ttaaaagagt tttgcttgcg ctaaaacaaa gctcatgctc
    11581 tttaaaaaga agttctacac tcacaccaat ttttaaattt tctaaagatt ttaattcaag
    11641 cattaaaaca ctaaaaatca cttctttaga aagtatttta acaataacta tatcctcttg
    11701 atttaaaagc tcacaaattt gtccttttat aaggttcatg gtgtgctaaa tccgtatttt
    11761 ttaaaaattt cttttgcttt tgaagagcca ataaattcgt taaattcaaa ggctaatttt
    11821 ttatccttag cgtattttgt gatgacataa ctttgctcta aagggctaaa atactttgca
    11881 tcaattataa cagccttacc cttaggatga ttgatagaag aaactaaaga ataagccact
    11941 atagctatat ctgaattttt gctatctaca tgtaaaacag gcactgagat attttcgcct
    12001 aaaacgattt tatccttaag aagctcattt aaacccaaat tttcaagcac ttctttagct
    12061 gctactccat aaggagctac tttaggattg gctatgctta gatgcgtgat tttgtttgcc
    12121 ttttctttta aattttcaac gcctccttgg agtaaatttt catccaagct atacaaagcc
    12181 aaaactccca aaacataaac ttttggtttt attaaagcat ttttatcatc ataaatagcc
    12241 ttagcatatt tagtatccgc tgaaaaaaag agatcaaatt ctcttccttg ttttaaaagc
    12301 tcataatatt ttccagaagc accaaaaacc aattctattt tatcttctgg atgtgttttc
    12361 aaaaactcat ctttaacttc actcatcgcc tttgaagctg aagaagctac aaaaatactt
    12421 aaattttgcg catttaaaca cgaaacaaaa agcaaaatcc caaaaaatac tacaaacttt
    12481 ttcatttagt tttccttgtg taaaaattta atttttggat tataacacaa aaaattcatt
    12541 ttatatcatt tttgcataaa ataaatacag gatgataagt gagtttgttt tgaaattttt
    12601 cttcaaattc ttttaaaaaa cctttattta aaggataaaa tcctaaagaa tttactccgc
    12661 ttaattttaa atgtctaaaa acatctaaag cattatcaaa gcttaatttt atgagttctt
    12721 gagtaatttt tacttcatta aaatagactt taaaaatttg ctctaattca tttaagctaa
    12781 aataatttaa accaaaaccc gtgctttgct tgatttcttt taaattttgc tctgcaaaag
    12841 tagaaagaag taaaatccca ttttgattta gcatatctct aagacttggt ataatgcgtt
    12901 ttaaatcaag ccattgcaaa gttgcatttg aaacaataag atcaaatttc tctttactta
    12961 aatcctgttt tgcaatttcg ttcatatcaa aaattaaaat actagaattt tctttaaaat
    13021 ctaaaatatc gttttttaaa tactcatcaa aagtaataaa attttgaagt tttttgctca
    13081 attcacccct gccacaacca aattcaaata ctttttcaaa atgtgaaatt tttaaatctt
    13141 ttaaaatttc acaaagtttt aaacccataa aatcttgcac ttttgcatgt ttttcataat
    13201 cttttgcttt taaaaaattc aaagctcatc ccaagtttta aaatgaaaaa aagcaaaatg
    13261 cggttcattt aaaaaaataa gttttgaaaa agcatttttt aaagcatttg gtggaaaaat
    13321 ttcatctttt ttacttgaat aaaccttatc ccaaagcaaa ttttcttctt gttttactaa
    13381 agcaaagtca aaaagttttt caagctctat tttcaaagct ttttcatctt taaaaataaa
    13441 atctttggct aagcttttgc gttctttaaa taaagcctct ttaaagtgtt ctaatttaaa
    13501 attttgcagg gtttttttaa aaattgtagg atgaattcct tttgatttat ctatgcctaa
    13561 atttgtgcca tttatggcta ttttttgttt aaaattaagc tcttttaaaa gtctatttgc
    13621 cacacaaact cccatagaaa aagcgattaa aaaaagttca tcaaaagctt tgaaattaaa
    13681 atttaaatca aaattttcat aatcataaaa taaaatcaca tttttatcgc tttttaaatg
    13741 cgaaaaatga ctaggatgtg aagcaaaccc tccaaatgcc actataagtt tttttgaatc
    13801 aggatttttg cataaaaatt catatttcat aaaagctcta ttatcctttc aagttcttct
    13861 atattaagtc ctgcatgcaa agaaaaacga attcttgctg tattttttgg cacggtaggt
    13921 tctttgatcg cgggagcaaa aaatccagct ttttgaagtt tttgtgaaat ttctaaggct
    13981 tttttatttt cacctaaaag caagcaaata atataagcat cgcccaaaat agtgtgattt
    14041 ttttcttgca atttactttt aaaaaaagtg cttaaaagct ctaatttttc tctttctttc
    14101 ttaaaataag gcattttttt aaaaataaat tgcgtccaag ctacattaat aggtggcaaa
    14161 gctgtagaat aaataaaagc tctagctttg ttgatgaaaa attttttata tttttcctcg
    14221 catatcatac aagcacccat ggaagcaagg gcttttccaa aggtaaaaac caaaaaatcc
    14281 acttcatttt ctaaggctag ttttttaaca agccccaaac cctcttcatc aaaacaaccc
    14341 acgctgtgtg cttcatctat ataaagcttg attttatcat aacgcttttt aagctcacac
    14401 aaagttttaa aatcgctaaa atctccatcc atactaaaca aagcttcgct taaaacgatg
    14461 atattttcat aattttcata atgtttttgg atcaaacttt ctaaatgatt catgtcttta
    14521 tgatgaaaac gaaaaaaatc aaccccgcca agtcttaagc catcaatcat acttgcatga
    14581 ataaatttat cggctaaaaa aagcgtctta gaaacgctag aaagtgctgc tatacaagag
    14641 atatttaaat gatagccact attaaaatgc aaaatttcct tatctttaaa tttagccttt
    14701 aaaaaacttt ctaattcttc ataaatttca aaatttccac tcaaacttct tgaactcgaa
    14761 cttgaaaaaa acaaatcttg ctcttttagg gtgtttaaaa actcagcttt taactcttta
    14821 gaagacgcca aataaagata atcatttcct gctaaattta aaagtttgcg atcttgctta
    14881 taaacaaatt tattttcatg ttttaaaggt gttagagttc ttagattgcg attttgctct
    14941 agatcttgca aaattttttc aagcttcatt tttttcctgt aaatttaaaa atttaaagta
    15001 ttattttgcc aaaatatttt taaaaaagaa gttataatgc aaaatcaaat cttaaaaaat
    15061 ctcgatttaa aacacatttg gcacccttgc acacaaatga aagatcacga aaccctacct
    15121 ttaatcccta taaaaaaagc aaaaggcgtg tggctttatg attttgatga taaggcttat
    15181 atggattgtg tgagttcttg gtgggtaaat ctttttggtc attgtaatga aaaaatcgca
    15241 aatgccatca aaaaacaagt tgatgagctt gagcatgtga ttttagcagg ttttacacat
    15301 gagcctatca tcaaattttc ggctagactt tgtgaaaaag tggggcatga ttttaataaa
    15361 tgtttttatg cggataatgg atcaagtgcc attgaagtag cgcttaaaat gagttttcat
    15421 tatcatttaa ataaaggttt gaaaaaaaat aaatttttat ctttaagcaa ttcctatcat
    15481 ggcgaaacct taggggcttt aagtgtgggc gatgttgcgc tttataaaga tacttacaaa
    15541 gccttgcttt tagagtgttt aagcacgcct gtgccacaag gtaaagacta tactaaagag
    15601 cttgaaattt taaaagatat tttagaaaaa cactcgagtg aaatttgcgc ttttatactt
    15661 gaacccttgg tgcaatgtgc gggaaatatg cacatgtatg aagctggttt tattgatgaa
    15721 gcgatcaaac tttgccatga ttttaatgtg caagtgattt ttgatgaaat tgcagtgggt
    15781 tttggacgca caggcacttt gtttgccttg catcaatgca aacaaagccc cgattttatc
    15841 tgtctttcaa agggaattac aggaggattt atgccccttt ctgtggtgct tacaaaggat
    15901 gaaatttata atgcctttta tgcaccttat agtgatcaaa aagccttttt acactctcat
    15961 agttatacag gaaacactct agcttgtgca gcagctaatg cggttttaga tatctttgaa
    16021 aatgaaaata ttttagaaaa aaatcaaatt ttaagcacct ttatccagca agaattttca
    16081 aaacttaaaa aatttgattt tttaggaaat tttagaactt gcggaatgat cagtgctttt
    16141 gatattttaa gccataaaca cgaacgcatg ggactttttg tatttcaaaa agccttagaa
    16201 aaaggcttgc ttttaagacc tttagcaaat acgatttatt ttatgcctcc ttacatcatc
    16261 acaaaagaac aaatcgttta tgtggtggaa agtttagagc agatttttaa tgaattttaa
    16321 gttgtaaaat ttcttgcatt tgctctttaa aatcttcatt taaaatgcta ttttcatcaa
    16381 aaaaatcaag attaattata ggaatttttg cataattttt tataaattca tcttgtaaga
    16441 tatctttttt acccatcatc acaagggcta aaagattgat atttctttgc tttaaagctt
    16501 caatgctaag caaaatatga ttaatgcttc caagatagta ttttgctact aaaatacttg
    16561 cccttttatt taaagccata aaatcaatca tagtgtaatt ttcatccata ggagaaaaaa
    16621 gcccacccgc aagctcaata agtaggttct cactttttgg taaaataata tctaaggctt
    16681 tataatcaag cttttctttg atttttccaa gatgaggaga agctggagtt tgcaaaaaaa
    16741 taccttcttt aaaaatcttt gtttttggac taaattttgc aataaactcg ctatctgttg
    16801 gagttcctgc ttgaatgagt ttaaaataat catagttaaa attcgcacaa aaagctgcac
    16861 taaaatgtgt ttttcctaca tcagtatgta ttccactcac ataaatttgc acaaaaaatc
    16921 cctaagaaag aaattttaaa cctactgtac aagcaataat cacagcgatt aaaaaaagtt
    16981 ttaaaaaact tttactttct ttataaaaaa gcactcctat cattacccca ccagcggttc
    17041 cagctcctgt ccatatagca taagcaacac tcatagcgat attttgcata cttaagctta
    17101 aaaaagtaaa agaaaatcca aaacacacta tcaaagcaaa aaggtaaagc ttatttttag
    17161 tgcttacaag ttctttcatg atcactacgc caaaaatttc acaagtagta gctaaaaaca
    17221 aataaaacca ttccataact aagcttcctt gcttacccat ttaagggcta taatgcttaa
    17281 aagtaaaatc gctataagta caagtttaac tatagaaaca gcctcgctaa aaataaacat
    17341 ttcatttaaa accactccga tagtgccaat gcctacaaaa acactataag taatacttac
    17401 ttcaagtctt tcgcaagctt ttaaaaagca agtaaaagaa atacaaactc caatggctgt
    17461 taaaatataa tgccaaattt ctgtagaata tttaagtccg cttacccaaa agcattctat
    17521 aatcccacct aagattatta aaaaccaagc tatattgata ttgaattttt cattcacatg
    17581 aagccttaaa ttaacataat atttgtaaaa caaattatat cttaaagaaa ttaaaagaag
    17641 ctataaattt acttttccat aagccaaaat tagatataat caaagctcat tttttaagaa
    17701 aggacaaaag atgttagaag gtatcgttag agagagtatc ggtagaaaag ctgctaaagc
    17761 tttaaaaaga gatggttatc taatcgcaaa catctatgga aaaggattag aaaacatcaa
    17821 tgccgctttt aaagtaaatg agtttattaa ggaagttcgt aaaaaaacta ctttaatttt
    17881 tgatgtaaaa gtaggttctc aaactttaag cgttgtagtt gtggattatc aaaaagatcc
    17941 tgtaactgca gaacttaaac atgtggattt aaaagttgca caaaaaggtg tgatttctaa
    18001 atacatggtt ccagttaaaa tcacaggaac agctataggt cttaaaaata aaggtgtttt
    18061 aatccaatca aaaagaagat taaaagtaaa atgtgcagct gaaaatttgc caaatttctt
    18121 cgaacttgat gtaagtaaac ttgatgtggg tgatgcttta cttgttcgtg atattgtagt
    18181 tcctgcggga gtaactatga ttgatgctga tagagtagcg gttgtaggtg tagaaaaagc
    18241 tagatgattt tagtcgtagg gcttggcaat ataggcgtag agtatgaaaa tacccgtcat
    18301 aatgtcggtt ttatgctaat tgacttgctt ttaaaagaaa gcaattttac aaatcttaca
    18361 aactctaaat ttaaaggaga actttttaaa ataggttctt ctttacttct tcttaaacct
    18421 agcacttata tgaataattc aggacttagt gtaaaagcag tgaatgattt ttataaatgc
    18481 gaaagaatga tagttatcca tgatgatata gatataaatt taggagcctt gcgctttaaa
    18541 aaaggcggtt caagtggtgg acataatggg cttaaaagca tagatacttt atgtggaaat
    18601 gattatgaaa gagtgcgtat aggagtggga aagggtgaaa atgtgatttc ccatgtttta
    18661 ggtaaattta aatccgaaga agaaataact ttaagcaaag ttttagagca tacaaaaaaa
    18721 gctttgcttg agcttattga aaatgatgat ttgtctgcta tatcatccaa atacagccta
    18781 aaggcttaag atgtggatat tttttcgttt tatttcaggg atttatctaa aaaatttttt
    18841 tattatattt ttttctttac ttggttttta ttgcggtatt gatttgctct taaattttaa
    18901 agatctacca aaagccgcaa atcttgattt gctttatgtt atgtttttat ctttctcggc
    18961 agtgccttat gtattaccca tttctttgat ttttgctttg gtagtttctt tgatttctat
    19021 gatcagagca aatgaatttg taagtcttta tgcgttagga ctgagcagaa attatgttat
    19081 tttatttcct tttttatggg ctttattttt ttgttgtatt tatataggat tgaattttac
    19141 ttcttttgct tatgcaaatg attataagag aaatatttta aaaaatggca ctattatgaa
    19201 tcaaagtgga gaagtgtttt tgaaatttaa caataatttt gtttatattt caaagataaa
    19261 caatggacaa aatagtgctc aaaatataaa aatttttaat atcaatgatt taaatttaag
    19321 ctcttttgta agtgctaaaa atgcccattt tgaaggtgaa agttggattt tgcgagatgg
    19381 taatattaca ttattaccta aaaattatga acttgctaat gatggtttaa agttacaaga
    19441 tttctccgag cttaaatcac ttgagggttt taaaccaaag attatagaag gggttgctag
    19501 taatagtgat tattcaatat ctgacgcact tgaaagtttt gagcttttta aggcgcaaaa
    19561 tgtcaataca gatgctctta aaatcaatct ttataaattt gtttttactc ctttttttgc
    19621 accattttta atgcttatta tgtattattt ttttcctgta atagcaagat tttttaatct
    19681 tgcttttgta acttttatag cttttgtagt gactttgatg atttggggag tcttgttttt
    19741 gcttactaga ttaagcgaaa atagtgtgat tgcaagtgaa attggcattg tagtgcctat
    19801 tataattttg ggttgtttaa gtgcttatat gtattataag catcgataaa ttaagctttg
    19861 tgtagtaaaa ttataaaaat taaaggttaa atatggatta taaacaatta aagcaagaat
    19921 ttaatactcc tttttatatt tacaattttg atttcataaa agagcgtttt ttaaatctca
    19981 aagaggcttt taaggctaga aaatctcaaa ttttttacgc tgtaaaagcc aattcaaatt
    20041 taagcttgtt gcaaatgctt gcaaatttag atagtggatt tgattgtgtg agtataggcg
    20101 aggtaaagcg tgctttaaaa gcaggagcaa aagcttataa gattattttt agtggagtag
    20161 gaaaaaccaa agaagagtta agacaagctt tagaatatga tattttatat attaaccttg
    20221 aaagcgaagc tgaaatgatg cttttagaaa gtgtggctaa agaacttaat ctaaaagcaa
    20281 gaatcagtat tcgtgttaat ccaaatgttg atgcaaaaac tcatccttat atttctacag
    20341 gattaaatga aaataaattt ggtgttgaaa ttgatatagc aagaaaaatg tatctttatg
    20401 caaaaaattc atctttttta gagcctgttg gagtgcattt tcatataggt tcgcaacttt
    20461 tagatatttc tcctattcat gaagcagcag gcattgttgc aaaacttgta agagagttaa
    20521 aagccttgca aatcgatctt aaattttttg atataggcgg tggcttgggt gtggcttatg
    20581 aaaaagatga gtgcgaacct gatctttata attatgcaca aggtatatta gcacaacttc
    20641 atgggcttga tttaaccata ggaatggagc ctggaaggta tttagttgct aaaagtggag
    20701 aatttgtttg ttcagtactt tatgaaaaac aaaataaaac caagcgtttt gttgtagtag
    20761 atggagcgat gaatgatctt atacgcccaa gtttatacga ggcttatcat gaaataatct
    20821 taccttataa tcaagctcaa gagagtttat gtgatgttgt aggtggaatt tgtgagagtg
    20881 gagacttttt tgctaaagca aggtctttac ctagcactca aagtggcgat ataatggtta
    20941 ttaaaaatac tggagcttat ggttttagta tgagtagtaa ctacaatact cgtaataaag
    21001 tttgcgaatt agcccttgaa gaaggacagg taagattgat ccgtcaaaga gaaaattttg
    21061 aaaatcaaat cgctttagaa gagaaatttt taaaggctta aaatgttttt tttagatgtt
    21121 caagggactt taatttctga tcatgataag agtttaatcc atggcgctaa agaattgatc
    21181 gattttttaa atgcaaaaaa tcttccttat gttatcatta ctaacaatac aaaaaaactt
    21241 gattttttag aaaaattaca gcaaaaagga ttggctataa aagaaaatgc ttatattgat
    21301 ccttttagcg ttttaaaata ccttttaaaa ccttgtaaag ttgcggcttt tggtgcagat
    21361 gagtttgtaa aaagtcttga aaatcttggt tttgaactcg attttgtaaa tcctagtgct
    21421 gtgcttgtag ctagttatga tgattttaaa tttaaagatt ttgctagtat gatagaattt
    21481 gctagaagag aagttaggtt tatagctatg cacgaaacta gcatttataa aaaagatggt
    21541 aggccttatc ctggtgtagg tagcattatg gctatgctta aaaatgctat tgattttgaa
    21601 tacgaggttg tgggtaagcc tagcattgct ttttataaag aagctttaaa tttgataaga
    21661 aaacaaaatt caaaaatcga ttttgaagat attaaaatca ttagtgatga ttttagagga
    21721 gacttgctta aggcaaaaga acttggcatg aaaaccttgc tggttttaag cggaaagata
    21781 agcgacacaa aagggcttga tacggatttg cttgatggag tttatcctag tgtttttgag
    21841 tttttaaagg agctaaaatg ccaaatttag aagaatttag aaataaaatc gatacggttg
    21901 atgataaaat tttagaactt ttaaatgaaa gaatgactta tgttaaaagt ataggcgagc
    21961 ttaaacaaag cagtggggga actatttatc gtcccgagcg tgaaagagcc attatcaatc
    22021 gtttaaaaaa tgccaattta ggacttttgg atcaaaatgc catagaggca atctatcaag
    22081 aaatttttgc ggtttcaaga aatttagaaa tgcctcaaac tatagcttat ttagggcctg
    22141 agggaactta tactcatcaa gcagcaagaa gtcgttttgg tgcgatgagt cgttatatag
    22201 ccttggctaa tatcgaagat gtttttaaag agttaagcaa caaagaagca aaatacggtg
    22261 ttgtgcctat agaaaataat actgaaggtg cagtaggtat tactttagat tgtctaggta
    22321 agtataatga gcttaaaatt tttggtgaaa tttatatgga tattcatcat tcttttgtgg
    22381 ggattaatga aaatttaaaa gaaatcaaac gcatttattc gcatccgcaa ggttataatc
    22441 aatgtcgtaa atttttagaa agtcatgaac ttagtgctat agaatttgtt ccttcaaaat
    22501 ctacagctaa tgcggcttat ttagcttcgc aagataaata tgcggcagca atttgctcta
    22561 aaatagcggc taagctttat aatgtgcctg tgctttttga caaaatagaa gataatgcag
    22621 ccaataaaac aagattttta attttaagcg atattaaaaa tcctaaaatg ccaaattgta
    22681 aaacttctat tttagcacac acagcacata aacctggtgg gcttagtttt ttattagagc
    22741 agtttaaaaa agaaaatatc aatcttacta agcttgaatc tcgtcctgta aaatcaaaag
    22801 aatttttaca cagtttttac atagattttg aagggcatat tgatgatgaa aatgtaaaaa
    22861 aagctttaaa agatatacaa gagattgttt ggcttggatc ttatttatca ggagaaaaag
    22921 atgaaattta atgaattttt aaatcattta agcaattatg aacccggaaa agatatagaa
    22981 gttattgcca aagaatatgg cgttaaagaa gtgataaaat tagcaagtaa tgaaaatcct
    23041 tttggtacgc caccaaaagc tatagaatgc ttaagacaaa atgcaaacaa agctcatctt
    23101 taccctgatg atagtatgat agaacttaaa agcacattgg ctcaaaaata caaagttcaa
    23161 aatgaaaata tcatcattgg tgcaggtagt gatcaagtga ttgaatttgc tatacatgct
    23221 aagttaaatt ctaaaaatgc ttttttacaa gctggagtta cctttgctat gtatgaaatt
    23281 tatgccaaac aatgcggtgc aaagtgttat aaaactcaaa gcattactca tgatttaaat
    23341 gagtttaaaa agctttatga agcacacaaa gatgaaatta aactcatttt cttgtgctta
    23401 ccaaataatc ctttaggcga gtgtttggat gcaagtgaag tgaccaagtt tattaaaggt
    23461 gtggatgagg attgtttagt tgtgattgat gcagcttata atgaatttgc aagttttaaa
    23521 gatagcaaaa aacatttaga accttgtgaa ttgattaaag aatttgacaa tgtactttat
    23581 ttgggaactt tttctaaact ttatggatta ggaggcttac gcattggtta tggtatagct
    23641 aatgctaata ttattaatgc attttacaag cttcgtgctc cttttaatgt gagcaatctt
    23701 gctttaaaag cagcagttgc agcaatagat gatgatgaat ttactaaaaa aactttagaa
    23761 aataattttt ctcaaatgca gctttataaa gaatttgcca aaaaacataa tatcaaaatc
    23821 attgatagtt atacaaattt catcacttat ttttttgatg aaaaaaatag tacagatttg
    23881 tctgaaaaat tgcttaaaaa gggtataata ataagaaatt taaaaagcta tggtttaaat
    23941 gctatacgca ttactatagg aacatcttat gaaaatgaaa aattttttac agaatttgat
    24001 aagattttaa gatagataaa tcaaataaaa atatgtaaaa ttcgctaaac taagggatga
    24061 gaattaatgg attttaaaaa tatgcttcat caaattgggc aactttatca aaatttaact
    24121 cgcaagcagc gtatagtgat tgctgcatct attgtagtag tggttgggtt tttggttttt
    24181 ttagctttat ttcgtggaag tggtagtaat gcaaataatg gatatgcagt tttagttgaa
    24241 aatgtaagcc caagttcttc tgctgcaatt gtagctaaac ttgaacaaaa taatattccc
    24301 tataaattag aaagtgaaaa taaaatttta gttccacaag atcaggttta tcgtcaaaga
    24361 atgtttattg caagcgaagg tcttataaaa gatagtcgcg tgggttttga agcttttgat
    24421 actcaagctt ttggagctac aaatgaagag caaagggtaa aataccaaag agccatagaa
    24481 ggcgaacttg caagaactat tgagacttta gaacctattc gtagcgctgt tgtacacata
    24541 gcatttccta aagatagtgt ttttactgaa aggcaaattc cgcctacagc ttcagttgtt
    24601 gttaatgttc gcgaaggctt aaagcttact agaaaacaaa ttgatggtat aaaaaatatt
    24661 gtttcagcgg cagttccaaa acttactaaa gaaaatgtta agattagtga tcaaagtggt
    24721 gtgcctttag atgagcaaga agcatatgaa gatgacttgg ttcgtgcgca aattaaattt
    24781 aaaagtgatc aagaaaaagc tttagaagat aagattatag aaaatttagc tccttttgca
    24841 ggtggtatgg ataaagtaaa agtgagtgta aatatagatt ttgatttttc caagcaagaa
    24901 tctcaaagtg aaatttatga tccaaatcct atagtgcgta gtgagcaaac tttaaacgag
    24961 gaaagaacag gtagaaaaga tccagaaatt caaggtgttc caggtgctgt ttctaatata
    25021 ggtcctgttg aaggacttga caataaaggt caaattgaca cttataaaaa aaatcaagtt
    25081 actacaaata atgaactttc taaaactatt acaaatacca aaaaacaatt tgcaacagtt
    25141 ttacgcactt cagcagctgt cactatagat ggaaaatatc aagatgtggt tgatgaaaat
    25201 ggggatgtga aaagcgaata tgttccattg actaaagaag agcttgcaag tgttgagagt
    25261 atagttaaaa atactattaa ttttagcgct actagaggcg atagtgttgt agtgcaaaat
    25321 ttaccatttc atcgtgagtc gattagagtt gagagtaaag ttaaaacttt ttacaatcgt
    25381 tttgttgagc catttattcc accagttaag tattttattg cagcgatttt actttttatt
    25441 ttttacaaaa aagtcattgc tccatttact caaaaaatgc ttgaagatgt cgcagcgcaa
    25501 gaagaaatgc agcaaggtcc aaatgctgtt ttagatgatg ctgaagatgc tttggagaaa
    25561 tttaatgcag caaggaaaaa agttgaagaa caacttggtt ttggggataa ttttaatgaa
    25621 gattctattc aatatgaggt tttacttgaa aaattgcgtg gtttagtaag tgataaaggc
    25681 gaggaaattg cagcactttt acaaaactta attcaaaatg atagtgaatt tggcgaaaag
    25741 gatatgtgat gataaagcta agtgaagaac aaaaaatggt ctatgatgat ttatcgatgc
    25801 ctgagaaggt agcgatattt cttatacaac ttggcgaaga tgcaacaact tctgtgtttt
    25861 cacatatgga aattgatgta attacagaaa tttcacgtta tattgctatg gctaaaaatg
    25921 ttgatagatc cgtagctact gcagttttag aagaatttta cactctgctt caatcaaatc
    25981 aatatattaa aagtggtggt ttggaatatg ctaaagaaat actttttcgt acttttgggc
    26041 cagagattgc aaataaaatt cttgaaaaac tcactaaaag tatggagaat aatcaaaatt
    26101 ttgcttattt ggcgcaaatt aaaccacagc aacttgcaga ctttattacc aaagagcacc
    26161 cacaaaccat cgctcttatt ttggcacaca tggattctat tcatgcggca gaaactttag
    26221 agtattttag tgatgaatta agggctgagg tggttataag aatggcaaat cttggcgata
    26281 tttctccaag tattattaaa agagtttctg cagtgctaga aagcaagctt gaaagtctta
    26341 cctcttataa ggttgaagtg ggcggcccaa gagcggtagc agaagtgctt aatcgtttgg
    26401 gtcaaaaagc aagcaaatca accattactt atattgaaca aagtgatgaa cgcttagcag
    26461 agactattaa agagcttatg tttactttcg atgatataca aaaacttagc actcaagcta
    26521 taagagaaat tttaaaagta gctgataagc gtgatttaat gataggttta aaaggtgcaa
    26581 gtgaagagtt aaagcaaaaa ttcttagcca atatgtctac gcgtgcaagc gaagcttttc
    26641 ttgaagaaat gggttttttg ggtgctgtgc gtgttaaaga tgttgaagat gcacaaagaa
    26701 aggttgttga agtggtgcaa aaacttgcag aacaaggtct tgttcaaaca ggcgatgcgg
    26761 atgaaatgat agagtaggtg agagatggtt aatcgtagca atgtaatttc tggtggggct
    26821 tctgatcagc atgttgttga aggatatcgt tttaaagtta tttcagaatt tgataatcat
    26881 acaggtgaaa aaaaacatac tcaaactcca gatgaagaaa atgctaatat atctttaaat
    26941 gacgaaaaag cagttgaaga aaatcaagct attgccccta cgcaagctgt tatggaaact
    27001 caaattccaa catttcaacc aagttttgtt gaagatttgc ttaaaaaaac agatgaaatg
    27061 tcaagcaata ttattaaact tcaaatgcaa atagaaagcc aagagaatga atttaataac
    27121 cgcttaaatt cagaacttga aaatgctaaa gaaaaatttg ccaaagaagg ttatgagaaa
    27181 gcaaaagaag aatttcaaaa ggaattgagt gattttaaag ataagtattt aaaaagtata
    27241 gccaaactcg ataatgcttg cgaaaatctt gaaaatttca tagaaaaaaa tgagaaagaa
    27301 ttagcagata ctgctataga tatcgctaaa gaagtaatct taaaagagct tgaactaaat
    27361 tcaagtaaga tagcttatgc tttggccaaa gatttaatcg gcgagcttaa gggtgctagt
    27421 gcaattgagc ttaaggttaa tgcagaggat tatgagtatt taaaagagca atttgatcag
    27481 aatgctcata ttaaaataag tcttgatgat gcaattagca aaggaagtgt tgttattata
    27541 agtgacgcag gcaatataga atccaatctt aactctcgtc taactaaaat taaaaaaatg
    27601 gtgaataatg agtaaaaaat ttgcccatac tcaagaagag ttagaaaagc taagtttaaa
    27661 agaattagaa aatttagcag catctatgcg tgaaaaaatc atacaagttg tgagtaaaaa
    27721 tggtgggcat ttaagttcaa atttgggtgc tgtagaactt agtatagcaa tgcatttggt
    27781 ttttgatgca aaaaaagatc cttttatttt tgatgtgtcg catcagtctt atacacacaa
    27841 gcttttaagc ggaaaagaag aaatatttga tactttaaga caaatcaatg gtttaagtgg
    27901 ttatacaaaa cctagcgagg gagattattt tgtagcaggg cattctagca cctctatttc
    27961 tttggcagta ggtgcttgta aggccattgc tttaaaaggt gaaaagcgta ttcctgttgc
    28021 tttgattgga gatggtgctt taagtgcggg tatggcctat gaggctttaa atgaattggg
    28081 tgattctaaa tttgcttgcg taatactttt aaatgataat gaaatgagta tttcaaaacc
    28141 aattggagca atttcaaagt atctttctca ggctatggca acgcagtttt atcaaagttt
    28201 taaaaagcgt attgctaaaa tgttggatat attgcctgat agtgctactt atatggccaa
    28261 gcgttttgaa gagagtttta aacttattac tcctgggctt ttgtttgaag aattagggct
    28321 tgaatatata gggcctattg atggacataa tttaggtgaa attatttctg cattaaaaca
    28381 agcaaaagct atgcaaaagc cttgtgtgat acatgctcaa accataaaag gtaaaggcta
    28441 tgctttagct gaaggaaaac atgctaaatg gcacggggtg ggagcttttg atatagatag
    28501 tggagagagt gttaaaaaaa gtgatgctaa aaaatctgct actgaaattt tttctaagaa
    28561 tttgcttgat ttagcctcaa aatatgaaaa tattgttggg gttacagcgg ctatgccaag
    28621 tggaacaggt cttgataagc ttatagaaaa atatccaaat cgtttttggg atgtggctat
    28681 tgcagaacag catgcagtaa cttctatggc cgctatggca aaagaaggat ttaaaccttt
    28741 tattgcaata tatagcacct ttttgcagcg tgcttatgat caagtgatcc atgattgtgc
    28801 gattatgaat ttaaatgtgg tttttgctat ggatagagca gggatagtag gcgaagatgg
    28861 ggagacgcat caaggtgttt ttgatcttag ttttttagct cctttgccaa atttcactct
    28921 tttagcccca agagatgaac aaatgatgca aaatataatg gagtatgctt atttacatca
    28981 aggacctatt gcttttcgtt atcctagagg gagttttatt ttggataaag aatttaatcc
    29041 ttgtgagata aaacttggta aggcacaatg gcttgtaaaa aataatagtg aaattgcttt
    29101 tttaggttat ggacaaggtg tggcaaaagc gtggcaagtc ttaagagcct tgcaagaaat
    29161 gaataataat gctaatttga ttgatttaat ttttgctaaa cctttagatg aagagctttt
    29221 gtgtgagctt gctaaaaaaa gtaaaatttg gtttattttt agtgaaaatg ttaaaattgg
    29281 cggtatagaa agtttaatta ataatttttt acaaaaatat gatttgcatg taaaagttgt
    29341 tagctttgaa tatgaagaca aatttattga acatggaaaa acaagtgagg tggaaaaaaa
    29401 tctagaaaaa gatgtcaata gttt
//
LOCUS       DAEDTT010000004        27882 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.004, whole genome shotgun sequence.
ACCESSION   DAEDTT010000004 DAEDTT010000000
VERSION     DAEDTT010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27882)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27882)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27882
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.004"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..309
                     /locus_tag="KLC54_000151"
     CDS             <1..309
                     /locus_tag="KLC54_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HBD9176571.1"
                     /translation="FALSVKLVKDCDEAIEHINKHSSLHSETIISNDASNIAKFQRLI
                     NSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGVEDICTYKYIISGEGQIRE
                     "
     gene            306..1391
                     /locus_tag="KLC54_000152"
     CDS             306..1391
                     /locus_tag="KLC54_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HBD9176572.1"
                     /translation="MNKIEMLKQHFKEIAKLNSSEQVWQMPFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPNTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGLVAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYICFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELVLLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSKAANFMSENADTLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKRKA"
     gene            complement(1388..2185)
                     /locus_tag="KLC54_000153"
     CDS             complement(1388..2185)
                     /locus_tag="KLC54_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HBD9176573.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYGFDK
                     GVLVQPSFLGVDNEFLLQSIEKDENIKAIVVVDEGIKFDELKKLKERKACGVRLNLIG
                     KELPNFKTMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVKNLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYVNNEQAVKFAKKIYEILKEYFPLSNFV
                     FGSDWPHTNFEANVNFSSALAAFNEVVVSKKEQEQILGDNACALFDF"
     gene            complement(2196..3488)
                     /locus_tag="KLC54_000154"
     CDS             complement(2196..3488)
                     /locus_tag="KLC54_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HBD9176574.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVIFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFMTSQSGIIF
                     RGLMENSGIEANEAFVNSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVISKPDSFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVEAGVIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            complement(3607..4611)
                     /locus_tag="KLC54_000155"
     CDS             complement(3607..4611)
                     /locus_tag="KLC54_000155"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HBD9176575.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLALEINLLAKENDKAKIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLPKNDFVKFFKVYLPNLEAKEPVTLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNAIEHFDKAIAHIEDDYLGSHWLGSFALLAMDVDIL
                     "
     gene            complement(4621..5574)
                     /locus_tag="KLC54_000156"
     CDS             complement(4621..5574)
                     /locus_tag="KLC54_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HBD9176576.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPYLSFFENKNATLMALIIGIIISSVVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(5561..6253)
                     /locus_tag="KLC54_000157"
     CDS             complement(5561..6253)
                     /locus_tag="KLC54_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HBD9176577.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            complement(6412..6981)
                     /gene="efp"
                     /locus_tag="KLC54_000158"
     CDS             complement(6412..6981)
                     /gene="efp"
                     /locus_tag="KLC54_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HBD9176578.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGE
                     AKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            7095..7415
                     /gene="rnpB"
                     /locus_tag="KLC54_000159"
     ncRNA           7095..7415
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="KLC54_000159"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(7413..7688)
                     /locus_tag="KLC54_000160"
     CDS             complement(7413..7688)
                     /locus_tag="KLC54_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176579.1"
                     /translation="MKQWLSDFKLALIQEDVNKLENLLDELDMKAFIKNLTKESPSED
                     FLKENANDLFYQVQALLQEAVMLIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(7669..8055)
                     /gene="fliS"
                     /locus_tag="KLC54_000161"
     CDS             complement(7669..8055)
                     /gene="fliS"
                     /locus_tag="KLC54_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HBD9176580.1"
                     /translation="MQNNLAYNAYSQNQAGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLDYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            complement(8067..9998)
                     /gene="fliD"
                     /locus_tag="KLC54_000162"
     CDS             complement(8067..9998)
                     /gene="fliD"
                     /locus_tag="KLC54_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HBD9176581.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSKGLANDSGFVNANLTGTTDLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDAQGQYQSDPEA
                     ENIFSNLGWELDKTTQTIDPAKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTV
                     TDLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGT
                     KGTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAG
                     TLSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKQGSLNQYLDSSGTGNKG
                     LDFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKV
                     ESYDQNGVKGFKLNFSGDGSSDFSIKGNATILQELGLSDVNITSKPIEGKGIFSKLKA
                     TLQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKL
                     NQQLNTVTNMINAANNSNN"
     gene            complement(10001..10366)
                     /gene="flaG"
                     /locus_tag="KLC54_000163"
     CDS             complement(10001..10366)
                     /gene="flaG"
                     /locus_tag="KLC54_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HBD9176582.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQGQEGDDGQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            complement(10523..12325)
                     /locus_tag="KLC54_000164"
     CDS             complement(10523..12325)
                     /locus_tag="KLC54_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HBD9176583.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYI
                     QNLDKTQNNLGMYRLQMSDKNELLIHWQIHKDGANFYHEYKNVGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKLTPCENGIFVPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            complement(12322..13245)
                     /gene="hemC"
                     /locus_tag="KLC54_000165"
     CDS             complement(12322..13245)
                     /gene="hemC"
                     /locus_tag="KLC54_000165"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HBD9176584.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPRGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLEIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(13242..13631)
                     /locus_tag="KLC54_000166"
     CDS             complement(13242..13631)
                     /locus_tag="KLC54_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HBD9176585.1"
                     /translation="MNYKLSLSPLFVLEIIASILFIVFFGFGNFLFFILLSMIFGVIL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLIFPGIITSVFGIFVFFFGIALKLMTK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(13628..15337)
                     /locus_tag="KLC54_000167"
     CDS             complement(13628..15337)
                     /locus_tag="KLC54_000167"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HBD9176586.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFIEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEIKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCAKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVAIEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVIGKGLENNEIELIQREGLVKELIKTDELMEILKK
                     KVL"
     gene            complement(15321..16619)
                     /locus_tag="KLC54_000168"
     CDS             complement(15321..16619)
                     /locus_tag="KLC54_000168"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HBD9176587.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNP
                     ISVASVAVAKAKELADLAQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELPYKRYFFDIAVPR
                     DIDINENENISVFAVDDLENVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(16619..17512)
                     /locus_tag="KLC54_000169"
     CDS             complement(16619..17512)
                     /locus_tag="KLC54_000169"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HBD9176588.1"
                     /translation="MQKIDELIKQFLEELGYEPILNMLSNVKSGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFTSIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKASKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(17526..18062)
                     /locus_tag="KLC54_000170"
     CDS             complement(17526..18062)
                     /locus_tag="KLC54_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HBD9176589.1"
                     /translation="MFKISPYLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(18065..18328)
                     /locus_tag="KLC54_000171"
     CDS             complement(18065..18328)
                     /locus_tag="KLC54_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HBD9176590.1"
                     /translation="MDFFDEMFNKTPKEKFIEIIQNGNLGALEKVFEEFFADHIAMVE
                     LLEKQGLTEMDVKNFILENGDFIEERQNDIYIELGAKILGHEG"
     gene            complement(18467..19024)
                     /locus_tag="KLC54_000172"
     CDS             complement(18467..19024)
                     /locus_tag="KLC54_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HBD9176591.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKDTMLHMVP
                     AKTRDANAKAFDLGIKYATQAKPHS"
     gene            complement(19021..19866)
                     /locus_tag="KLC54_000173"
     CDS             complement(19021..19866)
                     /locus_tag="KLC54_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HBD9176592.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHVVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKSRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(19867..20991)
                     /locus_tag="KLC54_000174"
     CDS             complement(19867..20991)
                     /locus_tag="KLC54_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HBD9176593.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKIYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(21000..21311)
                     /locus_tag="KLC54_000175"
     CDS             complement(21000..21311)
                     /locus_tag="KLC54_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HBD9176594.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECETHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(21325..22194)
                     /gene="sucD"
                     /locus_tag="KLC54_000176"
     CDS             complement(21325..22194)
                     /gene="sucD"
                     /locus_tag="KLC54_000176"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HBD9176595.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(22204..23367)
                     /gene="sucC"
                     /locus_tag="KLC54_000177"
     CDS             complement(22204..23367)
                     /gene="sucC"
                     /locus_tag="KLC54_000177"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HBD9176596.1"
                     /translation="MNIHEYQAKAIFADNGIPTLKGKVAFSVDEAVSNAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLATHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDITEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(23368..24270)
                     /locus_tag="KLC54_000178"
     CDS             complement(23368..24270)
                     /locus_tag="KLC54_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HBD9176597.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANKIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSSVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFDDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(24267..26471)
                     /locus_tag="KLC54_000179"
     CDS             complement(24267..26471)
                     /locus_tag="KLC54_000179"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HBD9176598.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILATFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFASVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKISDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSEGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNIA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLNGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCSNHKAKILAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANYLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNNAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(26588..>27882)
                     /locus_tag="KLC54_000180"
     CDS             complement(26588..>27882)
                     /locus_tag="KLC54_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HBD9176599.1"
                     /translation="QKQQGNFNTQISRLYFDNGELLDLKNQNVEVKLDYSQNVNISIP
                     QWNLILNFKDGLEANLNNPKILFSFSPLLKKFGFIDAKNVYYKTLNFEDFNASVNDAY
                     FKNNLLINGQTPYENDSFDIVKNKGIMEIHTQSDTASAKISSDNKEIHLKNLSYIYKK
                     DSNSSNSTFDISTNTQNISFGGANVALILPDSNKTLAFDRVEADLKGNALDLKGSRGN
                     AKFDLYYSSNDLNLNVSNIDDNYLNEFLQKQAVQDGVFNLSIKGSGLEYFDGQIDFKN
                     TYVKDLRGINQLISFIDTVPSLLMFKSPTFNQKGLSLHDGKIIFNRKKDLLSVSAINL
                     NGDSVDIYGLGSANLRLNTVDFSLELKTLKSASEAISKVPILNYVILGKNQEISTNLK
                     IDGSIDDPKFHTEILTDALKTPFNLIKNIIQLPANLLN"
BASE COUNT         9238 a         5335 c         3458 g         9851 t
ORIGIN      
        1 tttgctttaa gtgtaaaatt agtaaaagat tgcgatgaag ctatagagca tatcaataaa
       61 cacagctcct tgcattctga aaccattatc tcaaatgatg cttcaaatat cgctaaattt
      121 caacgcctta taaactcatc ttgtatttat gctaatgctt caacgcgttt tagcgatgga
      181 ggagaatttg gctttggtgg agaagttgga atttcaacca gcaaattgca tgcaagaggt
      241 cctatgggag ttgaagatat ttgcacttat aaatatataa tcagtgggga aggacaaatt
      301 cgagagtgaa taaaatagaa atgctaaagc aacactttaa agaaattgct aaattaaatt
      361 caagcgaaca agtttggcaa atgccttttt ttgcggcttt aggcgtgggt atagttttag
      421 ggcttagtgt attttttgga aaattaaact atggactcat tgccatgata ggagctttgt
      481 cttttttata tgttccaaac actcctttat atcatagaat ggctgttgtg atgtgctgtt
      541 cttttggcat agtttctagt tttttcttag gaattttaac ccattttttg cctgcaattt
      601 ttgccttcat ccctatagga cttgtggcca tgggaagttc tattttaatt agatattata
      661 acattggtgc acctggatat tttttctttg tattttcttg tgttttagga gcttattctc
      721 cttttgaagc taaggatttt atctttttag tgggtcttgt ttttcttggg gcaatggtag
      781 ctaatttaat ggctttgtta tattctatcg ttgtgattta tggatttaaa aatgctttac
      841 ctagcgaaat tccacctaga gaatacatat gttttgatgc agtttttgtg gattctttga
      901 tcatgggttc ttttgtggct ttttctatat ttataggaac ttttttagaa cttgaaagaa
      961 gttattggat agccatttct tgcacagcta ttatgcaagg tgtaacttta aattctatat
     1021 ggattaaaca aattcaacgc atcataggaa cggccttagg agtatgtttt gcatggtggc
     1081 ttttatctaa acaatttcac gatatagagc ttgttttact tatgatgtct ttgtttttta
     1141 taggacaatt tttagtcaat cgaaactatg ctttagctat gattttcttt actccttatg
     1201 ctacttatct ttcaaaagca gctaatttta tgagtgaaaa tgcagataca ttgatactcg
     1261 ctcgtttaat tgatgtcgta ataggaagca ttttaggact tttgggtggt tttgtaattt
     1321 ataaacctta tctaagagta cattttgaac gcattgcaaa atacatcttt aggataaaac
     1381 gaaaagctta aaagtcaaat aaagcacaag cattatcccc taaaatttgc tcttgttctt
     1441 ttttagatac aacaacttca ttaaaagctg ctagagccga tgaaaaatta acatttgctt
     1501 caaaatttgt atgtggccaa tcgcttccaa aaacaaaatt gctaagtgga aaatattctt
     1561 ttaaaatttc atatattttc tttgcaaatt ttacagcttg ttcattattg acatagtcta
     1621 tttttgctct ataaaaaccg ctaattttaa aaaatattct agaatttttt aaacaaatta
     1681 gatcctctaa atttgttaag tttgcattag ctcttgctaa atgatcgata acaatattac
     1741 aaccataagg aattaaattt ttaacaatat caacaagatt attatctaaa tctctttgaa
     1801 tttctatttg cattttaagc ttacttaaat tttcaaaaaa ttgagtccaa accatagttt
     1861 taaaatttgg caattctttg ccaattaaat ttaatctaac tccacaagct tttctttctt
     1921 ttagtttttt aagctcatca aatttaatac cttcatcaac cacaactata gcttttatat
     1981 tttcatcttt ttcgatactc tgaagcaaaa attcattgtc aacacctaaa aaacttggct
     2041 gaactaaaac ccctttatca aaaccataat gatctaaatt tgctttataa tctttaaaac
     2101 tagcatcata atcaggctta tatcttgcat ttgcaaccgt atttaacttt ttcaaaaata
     2161 tatgtgcatg agtatcaatc ttcattaaat tatccttata aaataaaact cattataata
     2221 gtagctaaaa tcgccgctat aaatcctata ggcacagctt taataagtaa atctttaaat
     2281 aatttttcct tatatttgtc aggacaagat cctaaaatta aacttcctcc agaagaaaaa
     2341 ggagaaatag cagaagcttg agcccctaca acaatacaag aaaaaagcaa tgcctcgctt
     2401 aatccactac ttgcagcaat gcttggaact ataggaaaaa gcgctggagt aaccacgccc
     2461 aaagtgcttg aaaaaagcga cataaaagct gcaatagcac acattattaa cggaataaaa
     2521 atcacattga tctcattttc tacaagatct gaaaataatt ttataacccc tgcttcaacc
     2581 gctatgctaa ttaacatccc tactccacaa atcattatca aggttcccca aggaattaaa
     2641 gcaacaactt gtttctcatc ggccaatttt aaaaataaag caatggcaac aaaaatcatg
     2701 gctatcatag ctatatctat ttttttatta aaataactaa ttgtctcatt atgtggaaaa
     2761 ataatattta gcacaggaaa gattaaaaca acaacaatca tcataaacat aagaattaaa
     2821 gtagtttttt gtttataatc aaatgaatca ggttttgaaa taacactgat ttttatatta
     2881 tttttaaaag cattaaacac aaaaaaagat aataccacaa taggcaaaat tatagtaaaa
     2941 gcaaaaataa tactagaatt tacaaaagct tcatttgctt caatgcctga attttccatc
     3001 aatcctcgaa aaataatccc actttgagaa gtcataaaat ttgctcctcc caaagcacca
     3061 tagtttatag ccatagctcc agcaattttg cttaaaccga ttttatcgca aagtaaaaaa
     3121 gtaagtggtg ccataaaagc taaaaccgta taaaaacctg ctcctaaagc agctataata
     3181 gcactaacca caaaaataac aaaaggaagc aaataaggat gattagcaaa acgatacatc
     3241 aaatgtccag ctaatttttc aagagttcca tttacggttg caaaattata aaacaatgaa
     3301 acagcaaaaa taacaaaaaa tatagaaata ggccaaaaag ctatgatttt tttaggagct
     3361 aaatccataa aaaaagctcc tataatataa gcaaaaatca tagcaaaaat tccaacatta
     3421 tgtctagtaa tatagcccaa aataatagcc actataatac tagagatgat taaaaaaacc
     3481 attatcatcc tttaaaatat tatagggctt ataatatcaa aaaatatatt tttcaaagca
     3541 taaaaacaaa atctaaattt aaaaaatatc tatttagtaa caaatctact catcttatga
     3601 aattttttat aaaatatcca catccatagc aagcaaagca aagcttccta accaatgcga
     3661 cccaagataa tcatcttcta tatgagctat ggctttatca aaatgctcta tagcattatt
     3721 tcttaaaaga atttttaaat tttcatcgca aaaatttgaa agtattttaa aacaccaagc
     3781 acgacttaaa tttagcccat ctagatgtgc tattttacca tcgctcctat cactcacact
     3841 cacaggggta aataaagtta caggctcttt tgcttctaaa tttggcaaat atactttaaa
     3901 aaattttaca aaatcatttt taggtaaaac agcacttaaa agcaccgctt ccatcaaaac
     3961 aggagataaa aactcatctc cacaaggctc taaagcttgc atatttttat catttaaaaa
     4021 ccacttttta gcactttgga tgatgcaata ctctaattct tgatcttttt taaatcttgc
     4081 atactctaaa gcaaaataca aagcaaaaga gctattaaaa tgggttccaa ctcgtatagg
     4141 ataatccatc ttaggcaaaa actccttaaa ttctttaaca aaaaaatcag ctatgccttc
     4201 taaattttta gcccaaattt tagctttgtc attttcttta gcaagtaaat ttatctccaa
     4261 agccagtttt aaaaaccatc cccatccata aggtctttca aaacctttgt gcgcagggtt
     4321 ttgaagatac ttaagctctc cttctgcttt ttctttgcta aattgagaat ctaaggcttt
     4381 gatgatttca tcctttgggg caaaatgaga aaaatctttt aaaattttca ccaaaagcca
     4441 gtgagaatgc acgctagaat gccaatcata agaaccataa aatataggat acataagttt
     4501 tggcggttta atatcattga tatcattaaa agaatgtgtg attttatttg gcaattctct
     4561 aaaaatattt tctagtgcaa taaagctaaa ttgttttata aatttttcca ttgtttctcc
     4621 ttaaaatcta aaagctaaaa aatacattaa aaagatatta gctacaagca aaacaagtcc
     4681 tgacataaac tgggctttaa ttacgccatt tttatcatct aaatttaaaa gtgccgcagg
     4741 aactatatta aaatttgcag ccataggcgt cattaaagtt ccgcaaaatc cactaagcat
     4801 tccaatcgct cctataatag caggatttgc atgcatttgt atgattaaaa tcggcaaagc
     4861 aatagcagca gtaatcacag gaaaagctgc aaaagcatta cccattacta tagtaaaaag
     4921 cgccatagca atacaataca cagctactgc aataaaagca ttatctaaac taatataact
     4981 agataaaagt ttagatactt gatcgcccat tcccgtagaa acaaaaacta ctccaagtgt
     5041 agccaaaatt tgcggtaaaa gcgccgccca actaatgtga tccatagtat gtgctgcatc
     5101 cttaacggct cttttaggag aagccttaaa cataaaacaa gcaaccactg aagaaataat
     5161 tatacctata atcaaagcca tcaatgtagc atttttattt tcaaaaaaac tcaaataggg
     5221 aaataaaaaa gtcccaataa gtgtaatcaa aggaaccatt aaagcaggaa taaaaagttt
     5281 atttttataa atatttgcat gttttatctc gtattctttt tcttctttac taacttcaat
     5341 ctttgctggt tttaataaat taaatcctgc tataagtgct agtaaaatca ctatacaacc
     5401 catcacaaaa tgaggcaaaa ctcctgctag taaaaaagta aaactataac ttatccagaa
     5461 taccccgccg cttattcttg attttatatc tttagcttga ttagaaaaac ttaaaattcc
     5521 aaaaactaaa aataaaattc ctacaatata ataaagcaaa tcaagactta tcatcactca
     5581 accctttata agttttttct aatcttttat caaataaata aagtctagaa caatggataa
     5641 ttaaagccaa aattccagtt ggtatagccc aaactgataa atgcaatggc tcaacaataa
     5701 taccattgct ctcataaaaa gctttaataa ataaaataga atgcacggct ataaaaatat
     5761 cctctccaaa aaatacagca acattatccg ttcccgcaga aaaagctttg attttttgac
     5821 tatctttatg tgttaagttt ttaaatttaa gcttagctgc agcttctgcc ataggggcta
     5881 ttaaaggtct tatcatctgt gcatgtccgc ctaaagataa aagccctaaa gctgcagtaa
     5941 cttgtctaaa aacaaaataa cacattaaaa ttcgtcctgt actggcaact tttattttgg
     6001 atattaaatt tttagcctgc tctcttaagc ctttgcgttc caaaacagca agtaaaggta
     6061 aaataagcca aattatagca acatagcgat tatctacaaa agattttcct atatcactaa
     6121 caaccttaac aaaatcaaaa cctgaaacaa gtccagcata aattccaact gaagttacca
     6181 ctaaaaaggg gttaatcttt aaagcaaaac ctaaaacaat caaaggtata gaagcaagaa
     6241 gtaaccattc catcaaccat ctccacaata taaattagaa atattataga aattttaaat
     6301 taaagaaaag tttaaaaaaa tatttttaag aatggaatga gaaattaagt aacaaaataa
     6361 attttatata aatttaaaaa agccttggaa tagtccaaaa gcttttttgt attacttgtt
     6421 cgctctttct atatactcac cacgcacagt atcaacgcgt ataacttcac cttctagcac
     6481 gtgaaaagga atttgcacta ctgcacctgt ttctaatgta gctggttttt tatttgatcc
     6541 ttgagtatca cccttaaaat ttggagctgt ttcgatgatt ttgagttcaa caacttgtgg
     6601 aacttctacg ccgatagctt taccattgtg gaaaagcaca tctaccatca taccatcaag
     6661 catccatttt tttgcctcac ctacatcatc atcactgata gctacttgtt catatgtttg
     6721 tgtatccata aattggcaat tttcaccatc atcataaaga tactgcatag ttttatcttc
     6781 taaatttgga gcttcacatt tatcacctgc atggaaagtt ttttcaagta ctttaccatc
     6841 aataaaagat ttgattttaa tacgcacaaa agcaggacct ttgcctggtt ttacatgctg
     6901 atactcaact attttaaaag gaattccatc gatttctatt ttaagtccct tttttaaatc
     6961 acccattgaa taagatgcca taaatttcct ttgttaaaaa ataaaaaata attttatcaa
     7021 attttgattg atatcacaat aaaattattt tatttgatga aaaaataagt aaaattacgt
     7081 taaaatccaa atttaaagca tagtaaatgc tcgcttcttt ttagaagagg aaagtccggg
     7141 ctgctaaaga caaacattcc atctaacaga tggctagggt aacctaaggg atagtgcaac
     7201 agaaagaaaa ctaccacgca agtggaaaag gtgaaacggc ggggtaaaag cccaccagcg
     7261 attttggtaa caatttcggc tatgtaaacc caatgtgcag caagaaggga tggttagcgt
     7321 ctttgtttta acccttcgct tgattttgtt tgcaaaaaca aaactagata aatgagcatt
     7381 caagacagaa ctcggcttat cgctatgctt ttttaagatt taaaatatgt caacgctttt
     7441 tgaaattttt gaatttcaac ggcttttgtt tttttctttt gttcaatcag cataacagct
     7501 tcttgcaaaa gagcttgaac ttgataaaat agatcatttg cattttcttt taaaaaatct
     7561 tctgaaggcg attctttggt taaattttta ataaaagctt tcatatcaag ttcatcaagt
     7621 aaattttcaa gtttattgac atcttcttgg attaatgcaa gtttaaaatc actgagccac
     7681 tgtttcattg ttatgcactt ctctccaagc ttctagcaaa cctttggtta catttataac
     7741 ttcattgatt ctatcttcgt tattttctaa atttgccaaa gataaaagtt gaatttctct
     7801 tgtataaagc ccgcttaaat aatgtgccac ttctccgcct ttttcataat ctaaagtatt
     7861 aataagctct ataaaaatag ccgtggttct ttttacaaaa tacactcttt gttctatatc
     7921 ttcatttctt atggctactt tagctcttgc acaaaaacgc aaaattccct cataaagcat
     7981 ttcaataagt ttttgcggag actctatccc cgcttgattt tgagaataag cattataagc
     8041 taaattattt tgcatctttt ttatccttaa ttattagaat tgtttgccgc attaatcata
     8101 ttagttacag tatttagctg ttgattgagt ttatttaaaa tactctcata ttgcaaccat
     8161 tgattcgcca ttgtatcata tcttgtatca atcatagcct gagttgagtc tttagaggta
     8221 tttaatgatt taatatcatt tgtcaaactc tcatcatatt ttgtaattga accatctttt
     8281 ccagtcatct cttgcaacgt ggcttttaat tttgaaaaaa tacctttacc ttctataggt
     8341 ttagaggtta tatttacatc agacaaacct aattcctgaa gaatggtagc atttcctttg
     8401 atggaaaaat ccgaactacc atctccacta aaattcaact taaacccttt aacaccgttt
     8461 tgatcatagg attcaacctt aacttttaaa ccttcaatac ctttgctgtt tatatgatta
     8521 gctaaatttt gaagcaattc ttcctctgtt tttcctgtta atttaaaatt agtaccatca
     8581 gaatttttag ataaatcata tgtttgatta ttaaaaacta tagtaaaatc tcctggttta
     8641 aaatctaaac ctttattgcc agtgccacta gaatcaagat attgattcaa acttccctgc
     8701 ttaattactt ctcctgtgtg attaatgtct tcgtatttag taatatttga aaaaaaactt
     8761 tcagtagagt ctggatcttc tttaactttt tgttcaaatt tagaagaatc aaaactcaaa
     8821 gtgcctgcat catttaaact taagccaaaa tcctgcatag aaagcataac cttagtgttc
     8881 actttattac catttgcatc ttcagtagtt ccatcaacaa cttgagaatc aaacaaatca
     8941 gcaagaatgc ttgagcgtat tgaatttact tcactgatgc cttgtaaagt tccttttgtt
     9001 ccagtttcac tattatagtc agttgcagca ttaagattgg ttactaaatc attataagca
     9061 tccaccaaat cttgcatggc ttttgtcaca ccttcaaaat cttgctgtac atcaaaatta
     9121 atttcacctg ttttatttaa agttaaagtc attcctacac caagatcggt aacagtatta
     9181 cttgatctaa acatcttaat accatcaagt gtgaattctg cattttgcgc agtttggata
     9241 tgcaaagaag catccttaat gccataacct tttttatcct tagctggatc aatagtctga
     9301 gtcgttttat ctaattccca tccaagattt gaaaatatgt tttctgcctc tggatcactt
     9361 tgatactgac cctgcgcatc tttttttcca gcatagaaac ttatcgcact gtcttcgcct
     9421 gtttctttac tggttaaagt taagcggtaa ggagtgcctt tctctcctgt gtttacaatc
     9481 ttagcgacaa tctctcctcc actagcttca ttaattttat cagctaaatc tctataggtt
     9541 gtgtttttat ctaccgtaac agtatattct ttgccatttg aaaaaaaagt aagatcggtg
     9601 gttccagtta aatttgcatt aacaaaaccg ctgtcatttg ctaatccttt gctttgatat
     9661 acatcttttt gtgcaagttg agtaacatta atattcatgc tttgtaaagc aacacccgaa
     9721 ttaactgtaa gacttgctgg aggattatcg ctaatacttc ctacaacttt tcttttcgca
     9781 aaaaccgtag catcggctaa tgatgaaaca gccgtctgaa aacttagtaa tttagttttg
     9841 atttctgtta aatctttttg tttggttgta ttttcttcaa tttttttagt ataaggatca
     9901 atacgagctt tttgctctgc ttcttttaat ttatctatag tatcttgagt taaaacccca
     9961 gaaccaaatc ctaaactaga tagactacca aatgccattt ttaactctcc ttatcaaata
    10021 tcattcctat cacatcccta aaatactcag ctaatctcat agcttcttca ctaggaattt
    10081 gacggatttc ccttccagtg cttttttcag tcacgctaat atacatagaa ccgattttat
    10141 cactataacc aaaacgaaca ttggtatcta gagaatccat ttgctcattt aacttttttg
    10201 taatatcagc caacttttca ctcacacctc gttgctgtcc atcatcgcct tcttggcctt
    10261 gacttctatc ggtttgaatg tttaaactag cctgtgtctc acttgttctt tggctaatgt
    10321 ttgccaaagc tgtatccatt tgcccatttg ccttcgatat ttccatttta aaatcctttt
    10381 taaaatttcc tattgctagt taaaagctta tatcgacaaa tttataaatt tatgaacacc
    10441 tataaagaaa attttatttt tcaataataa aaaaataata agcaaaaact gtgccaaaat
    10501 tttaaaataa atctcaatta tcttaaaaaa tttcaaattt attaaaaaga tctggattat
    10561 tttctaaaat attacgcaag atcaaatctt ctatcacgct tttagtgcaa tctgtttgct
    10621 taggccaagc tcttaaataa ccctcagctt cacctttagc acttgcatct actccaagtc
    10681 tttcttcttt gataaaaata tctcttttag catctatatt atttaccaca cgccaaacaa
    10741 gcatataaga attttcaagc ttattttcag catctaaaaa cactaaaatc ctaaaatgtt
    10801 ttttaaattc taaaagtttg tcaaaacttt gttcgatttt ttctttttta tcaagcaaaa
    10861 tacaaactat aggactttta ctttctttat aaaattgctt taaatttaaa agttctacct
    10921 tagttttaaa aagttctagt aatttttcat cttctaaaat ttcaagctct tcaacttgta
    10981 tttcttcaca agcatcaagt cctgctttac ccccaaaaca agaattaggt gaagcatgat
    11041 ctaattgatc acaaattcct tctgaaatta aaattttctt tgtattaaaa cgatctaaca
    11101 tataaggaat taaagcatca taatctttca aagaaggtgc atttttatcc acaaaaattg
    11161 catgcttaac aaaactcatt tgccctactc cccaaaatgc atgcataatt tgttgcgcat
    11221 gagcgggata ttttgcatcg atttttgcta agataagatt atgaaagacc ccattttcag
    11281 gcatattata atcaattaaa tcaggtactg aagtttgaag caaaggtaaa aaaattcttt
    11341 cagtaccaag tcccatgatc ttatcttcta aaggaggctt tcctacaacc gttgcttgat
    11401 agatcgcatc ttttttagca taaatttttt ctactttcat cacaggaaaa agttcagcag
    11461 gagtgtaaaa acccgtatga tctccaaaag gaccttcgat tttaaactct tctaaatcca
    11521 cataaccttc aataaccaca tcactatcat aaggtacaaa aataccattt tcacaaggag
    11581 taagttttgc aggagttttt ttaataaaac cataaagtaa aagttcaaaa attcccttag
    11641 gtaaaggtgc ttgagaacac caaatataaa gcggatctcc acctatggct atacttacag
    11701 gcattttttt aaaaccaaca tttttgtatt cgtgataaaa atttgcccca tctttatgaa
    11761 tttgccaatg tattaaaagt tcatttttat cactcatttg caaacgatac attccaagat
    11821 tattttgagt tttatctaaa ttttgtatat aaacttgccc catggtaata aatttacccg
    11881 catcatcttc ccaagttttt agtatgggaa gttcttcaag tgagtttaaa atttcataat
    11941 catacaaggc tttatttttt ttcagtcttt taggaggaat atttttaaaa cttaacaaat
    12001 tcataaaaaa atccattttt gctttaaaac tcgtaggaat atgaagcttg gtgagttttg
    12061 aaatttcttc agccacctct tcataatcac gtccaaaagc taaatttaaa gccttttcat
    12121 tgcaaaaagt attcatcaaa acaggaaatt tatattgttt atttaatttt ttatctatag
    12181 gatttttaaa taataaagcc ttcccttttt ctcctttttt agcttctata taggctaaat
    12241 gagcgatttc aagatctaca tctacaggct cttcaattac ccttaaaaga tcattttctt
    12301 ttaaaatttg aataaattct ttcatatcat actctcagct ttttttaaaa gttctttagc
    12361 acctttagca ataaactcct tagccaaact ctctccaaaa cctttaaaat cattcttttt
    12421 aatcattctt ttatctttta aaatttcact tccatcgggt agtccaagta ccgctcgcac
    12481 acaaatttca tctcctaaaa gctctgcgtt aatacctata ggaacttggc aacccccttc
    12541 taaagtagca ataaattctc tttcaatgct tgtttcaatc aaagcatttt catcatttaa
    12601 acattttaaa agttctaaaa ttttttcatc atttatgctt tctataccta aagctccttg
    12661 agaagccgca ggaataagct catctttgct aaattcataa acaaaattca cttgcttatc
    12721 taaatttaag cgtttaattc ccgccatagc taaaataatc gcatcaaaat cattattttt
    12781 taatttctct atacgagaat taacattacc acgcaaagaa ataatctcta aatcaggtct
    12841 taacaataaa agctgcattt tacgtctaag actagtggtg cctatttttg caccttttgg
    12901 caaagaaaga aaatctttat aattttgact tagcatagca tcattacttt gctctctttt
    12961 acttaccgct gccaaaacta aacctcgagg aaaaaaacta ggcacatctt ttaaactatg
    13021 caccgctaaa tgcgcttctt ttcttaacat actttcttca agttcttttg taaaaagtcc
    13081 tttaccacca atttttgcca aaggagaatc cagcaaaaca tcaccttttg ttttaaaacc
    13141 ttctaaaagc acttcaattt gatgtgtatt ttttaaaatt tgggctacat gctcactttg
    13201 ccaaagagct aattgacttt ttcttgttgc gataataagc ttcattttct atcctctata
    13261 atttcaacat caatgatttc ttcattagaa ttttgatact cttgtttagt gtattgatat
    13321 tttgatttag tcattaattt caaagcaata ccaaagaaaa atacaaaaat tccaaaaaca
    13381 cttgtaataa tccctggaaa aataagcaaa aaccctgcga taacaaaaga aaattgtgtt
    13441 aacatatcct ttaagccacc catttgaaat tcaagcatat ttttccaaaa aattcccaat
    13501 aaaatcaccc caaaaatcat actcaaaagt atgaaaaata aaaaattacc aaaaccaaaa
    13561 aacactataa aaagtatact tgcaataatt tcaagtacaa ataaaggact taaacttaat
    13621 ttataattca taacactttc tttttaagaa tttccataag ttcatcagtt tttataagtt
    13681 cttttaccaa accttctctt tggataagct ctatttcatt attttctaat cctttaccaa
    13741 taactaacgc ataaggaaaa cccataagtt caaaatcatt cattttaacc ccgaaacgct
    13801 catttctatc atcaagcaat acctctaatc caagattagt taaatcctca taaagcttat
    13861 tggcaaattc taaagccttt tcatctttga gatttgaaac aataatttca agcacaaaag
    13921 gagctaaagt tttattccaa atacatcctt tttcatcatg acttgcttca atagctacag
    13981 ccaacaagcg tgaaacacct atgccataac atcccatgta aaaaggctga cttttgccat
    14041 tttcatctaa gaaatttgca ttcatcgctt tagaatattt ttgtccgagt ttaaaaatat
    14101 gccctacttc tatacctttg ctttgtttta attttgctcc acatttagca cagcaatccc
    14161 cttctttaac ttcaatcaaa tctttaaaac gatctttgtt taaatttaca acatcaatac
    14221 cgattaaatg ataatctttt tcattcgcac ccataatcat ttgtttttcg ttttcaagct
    14281 caaaatctat ataaaaatct atatctttta atcccacaaa acctataaaa ccggctacca
    14341 aaccagcttt ttctaattct tcttcgctcg catcaactag ttcaagagca ctacaagcat
    14401 tttgcgcctt gatttcttgc aaatcatcac ttcctcttat aaaaaacaca actaatttgc
    14461 tttcattttc gtaaatagct ttttttacca ctgctttaat cgtataaaaa gcattgattt
    14521 taaaaaattg tgctaaagaa tctatagttt taatatttgg agtgtgaaat ttgcttgcat
    14581 aatttgcttc aggacgctca tcttgacaag tttttttagc tctttttgca gcttcaacat
    14641 tagccgcata atcacaattt tcacaaatta aaatatcatc ttccccattt tttgctaaaa
    14701 ccataaattc cttagaacca cttccaccaa tagccccact atcagcttca actgctctaa
    14761 aatcaagccc cattctttgt aaaatttgag aataagtttt atacataagc tcaaactcac
    14821 gccctaaatc ttcttcatta gcatgaaaac tatatccatc tttcattaaa aattcacgac
    14881 atcttaaaag cccgaatcta ggccttgctt catcacgaaa tttaagtccg atttgatata
    14941 aatgtaaagg aagttgttta tagcttgtga ttttattttt taccaaagaa agcatagctt
    15001 cttcatgtgt tgggcctaaa acaaattcat tttcttttct gtctttaaaa cgcaaaagct
    15061 cttttccaaa aacattataa cgcccacttt cttgccacaa acttgcagga gtgataaaac
    15121 taagatttac ttcttgtgct ccagctttat ccatttcttc tttaactata tttttaatct
    15181 tgtctaaaac tctttttcct aaaggcaaga aattataaag tccactgcca atttgttcta
    15241 taaaacccgc acgcgttaaa aaaatatgac taggcaaact cgcatctttt ggtgcttctt
    15301 ttaaacttgg tgcataaaat ttagtaaatc tcatcattat tctccatatc aaattcacat
    15361 ttatattgat ttaaaccttc aagattattt tgcaaatcaa aaacataacg catagcatta
    15421 atcactgtat cactttgcat tttaccttgt aaatgtttca aatttacagt aggcgtgtgt
    15481 aaaaaagcct taaaaacttg atgaatcaac tttctagctt cttctttatc agattttttc
    15541 aaatatcctt tttttaacgc aatttcaagt tgtttatctg catattcttt agcttgcaag
    15601 cgtatggctt tgataatagg catcaaagcc aaatcgttta aatatctaaa aaattcactt
    15661 gtttcacgac ctattatccc ataagccata cgagcttctt gttctcttaa tgctaaattt
    15721 ttttgaacca cattctcaag atcatctacg gcaaaaacag atatattttc attttcattg
    15781 atatcaatat cccttggaac tgcaatatca aaaaaatacc ttttataagg aagttcttct
    15841 attagagaat ttgtaataat agcatttggt gcattagtag ctgagaaaaa aaactcgtat
    15901 tgatttaaat atttttttaa attttctaaa ctatcatatt cgcttaaaac accaagtctc
    15961 tcgcacaaat ctttggcttt ttgtaaatca cgatttaaaa taatcacttt agcacccgca
    16021 gcaattaaat gttttgccgc aagctctccc atctctccag ctccaataac aacagctttt
    16081 ttttgcgcta aatctgcaag ttcttttgct tttgccacgg caacgctagc tacagaaata
    16141 ggatttttag aaatttgagt ttcattgcgt accttagcag cacatttaaa agcactatgt
    16201 accgctcttg aaaggtgtac tccgcaaaaa ttatttttta cagcaaaagc aaaggcatct
    16261 tttaattgcc ctgctatctg agtttctcca accaccaaac tatccaaaga acttgctacg
    16321 gaaaaaagat gatggattgc tccactatct tcaaaaatat cagctttttc aagtaaaata
    16381 tctttatcca catcacaaag caaagccaaa gatttaacaa taaactccgc acaggccatt
    16441 tttacaaaag caacaatttc aacacgattg caagtactta taaccaaaca ttcttcaata
    16501 ttttcatgag tgctaatgat ttttaaaaac tcactttttt tagcttcatt ggaaaagctt
    16561 aacttttccc ttaaggcaat atctgtattt ttatgagtaa aagatataca ataatacatt
    16621 aaaattccct atctatcata gctttaataa tatcattaag cttgttatta tcatattttt
    16681 caatcgcttt actagccttt tttgcataag ttttagcttc taaaatagct ttttctaaag
    16741 ctttttgttc ttcaaattta gtttttaacc actctttttc attttcattt aaatcttttt
    16801 taaataaagt ctgcaaatat atcctatctt gttcttgtaa attttcataa agataaatat
    16861 aaggtaaggt agtcttaccc tctttaaaat cattcatagc aggttttcca agaatttttt
    16921 catcactctt aatatctaaa atatcatcaa tcatctgaaa agcgagtcct aaattttttc
    16981 catattctgc aaaatctttt tcatataatc cagccaaaat agctccgcat ctcgcacttg
    17041 cttcgatcaa aacagctgtt ttattataga tcattttcaa ataagcttct ttattgatat
    17101 taaatttctc tcccaaatca acatccataa gttcgcctat agcaagcttt acaacagcat
    17161 ctgaaataat acttgtaaat ctagcatcca ttttgcttaa ttcataaaag gcttttgaat
    17221 acaaaatatc gcccaacata agagcatttt ttgtaccaaa ttcagcatta acagatcttg
    17281 ccccacgcct taattcactc tcatcgataa tatcatcatg taataaacta gcaagatgta
    17341 tcaattctat agctgcacaa attttaaaag caatctcact ctcatctgcg atagctaata
    17401 ataatttaga gcgtaatttc tttcctgatt ttacatttga aagcatattt aaaataggtt
    17461 catagccaag ttcttctaaa aactgtttta ttaattcatc tattttttgc actatctttt
    17521 ccttgttaat tgctattatt attttctttg cttgttaatg gttttacctg aggttcgtta
    17581 aaattaatca taggaacaac ctgattattt tgcggtggat tttgtaaagc tttttttctc
    17641 ggatctaaaa attctaccat taagcgagat tccttatctt ctatataaac cgtaaaagtt
    17701 gccaaacctt tattataacc actaaattct aaaataagtc ttgctctatc aatgtgtgga
    17761 ttggtataat caggtattaa agtttgagtt acccaatcta aatttcttct taaactcatc
    17821 acaaattgac gcggatattt gcgaaatttc gaatgtacga tgatattagt attatcaaac
    17881 aaagtccaat aaaaatcaaa attttgcacc ttatcttcat agcctatttc tttaatctgc
    17941 acactagctc tctcatcttt tttaagtata aatttataag tataatcaaa agttggttca
    18001 gatgctaaaa cattactaaa aataaaaaaa atacaaatta aataggggct tattttaaac
    18061 aattttagcc ttcgtgtcct aaaatttttg cacctaattc tatataaata tcattttgcc
    18121 tttcttctat gaaatcacca ttttctaata tgaaattttt tacatccatt tctgttagac
    18181 cttgtttttc caaaagttcc accatagcaa tatgatcagc aaaaaattcc tcaaaaactt
    18241 tttctaaggc tcctaaattt ccattttgta taatttctat aaatttttct tttggagttt
    18301 tattaaacat ttcatcaaaa aaatccatta attttccttg aaaatataag tttttgatta
    18361 taaaatttta atcgttaaaa gtagctaaat taaaataatt aaaatttaaa ttttatttgc
    18421 aatgtgtaaa attttagaag ttaaattccg catggtgcgg aatttattat gaatgtggtt
    18481 ttgcttgagt ggcgtatttt atacccagat caaaagcttt agcatttgca tcacgagttt
    18541 ttgcaggaac catatgaagc atagtatctt ttaaaacatc taaatctata catttactca
    18601 tataagcagc aattgcaagt gctacaactg attgagtagc cacatttcct acctcatctt
    18661 tagctatggt aataatagga atttcaaaaa tttgccattt tttataatct tcactttcag
    18721 gatgtactaa atttggctct acaactatga tacctccttc ttttacaccc ccacgaaaac
    18781 ctttataacc cttatctgca gtcgaaagca taaaatctac ttccccttct acagcataag
    18841 gaaataaaat ttctttatca tcgatgataa tatccacctt agtagggcca ccacgcactt
    18901 gtgaagtgta agtagaagcc ttaaaagctt gacgaccttc tttaatggct gcttctgcta
    18961 aaatttctcc tgcggtgata acaccttgtc caccttcacc gccaaatctt aattgatatt
    19021 tcattttaaa gctcctaaat ccaccattct tttttctttg gctgcacgac gtacttcttc
    19081 ataagcgtgg cagtattctg gctgagaatt atcctcatgc aaaattcctg ttggaaattt
    19141 atcttttctt tcttcaaaat ccatgctttc aaatttagct ttatccacaa cgcgactttt
    19201 aatccaatca agcatagcta cagcttcacc cattttgttt tttctaccta gattgatatg
    19261 acaatttgaa aaaacatcta caaaactata acccttatgc gctaaagcct tataaattaa
    19321 attttcaagc ttattagctt cgatcacatt accccttgcc acaaaagaag ctcctgcagc
    19381 tttagttaat tcacacgcat caaaattagg gtcaatattt ccaaattgag ctgttactgt
    19441 ataaaaacct tttggagtgg ttgggcttgt ttgtgaattc gtaagtccat agataaagtt
    19501 attgatcaca acgtgggtta aatcaatatt tctgcgacaa ccatgtatag tatgatttcc
    19561 accaattgcc aaagtatccc catctccgct tactacaata acatgtttac taggattggc
    19621 taatttaata cctgttgcat aagctattgc tctaccatga gttgtatgaa ctgtattaca
    19681 atttacataa gaactcattc taccactaca acctataccc gaaacaagac aaacatcatc
    19741 catattccaa ccaagttttt ctatcgcacg gataatacat tttaaaacaa cgccatcgcc
    19801 acatccccag caccactgag taggcatttt atctactctt agatattcat cataattaaa
    19861 agccatttat atattctcct ttaccttagc aataatttca cttggagtga taggacgacc
    19921 atttgcacgg tgcaagctaa taaaatcgcg acgcgaagtt actctttcaa tctcttcaag
    19981 atattgtccc atattaagct cgcttaccat tactttttta aatttgctta caacttcagc
    20041 aatttttttc tcagccactg gataaagagt aattggacgg aaaagtccca ctttaatccc
    20101 ttgctctctt aatctttgta tagcttcttt tgctgaacga cttacgcttc cataagcaat
    20161 gattaaaaat tcagcatcat caagcatata ttcttcataa gtgcaaatat cttcttgatt
    20221 gtttttaatt ttacctatga gtctttccat attttttttc actatgactc catcttcagt
    20281 tggaaaacct atgtctccat gatgaagtcc cgtaacatga taacgataac ctgtaaagaa
    20341 aggatttaaa gttgcaggct cattttctcc tgctgcataa ggcttgtaat cctttttatc
    20401 tccttcaaat tttttgcggt tataaatttt aatatctttt aaatcaggta aaactgcttt
    20461 accattcatg tgccctacag tttcatccat aagtaaaaat acaggagtca tatatttttc
    20521 agctaaatta aatgctctaa tggtttctgt ataagcttct tcaagacttg caggagcaat
    20581 agcaatgctt gcaaaatccc catgagttgg tgctttagct tgaaacaaat ctccttgtgc
    20641 tacacgagtt ggaagacctg ttgaaggacc acctctcata acatttacaa tcacaagtgg
    20701 aatttcagca ataaatgcaa gtcctatttg ctctgctttt aaagaaattc ctggaccgct
    20761 acttgcagtc atggatttta ctccactcat tgccgcacca atagccacgc taatacctga
    20821 aatttcatct tccatttgta taaaagttcc atcatttgcg ggaagcatat ggcttaattc
    20881 atgagctatc tcactactag gagtaatagg ataacctcca aaaaatttac atccacaatc
    20941 aatcgcagct ttggcgatta aaacattacc tgttgctata acttctctca ttatttttcc
    21001 tatgctaatt ttttgtattt gttatttttt acggctacgg ctctatcttt agcctcagca
    21061 gtaagtttgg caaatttaaa ttcatctctt tttgccacca taatagcaaa atcagggcaa
    21121 tgtgtctcac actcagtaca gcctatacag gattcagggt gtaccacctc tatcatttgt
    21181 cctaaaaccg catgcacatc atcacgcata gctaaaaccc cagcggggca atagctaaca
    21241 caaatattac atgctttaca tctatgctca tctacccaaa caggggtatc ttttggagct
    21301 gtcatactca tgttttttcc tttatcaacc taatattttt tgaatttctt caccaattaa
    21361 agccggagaa tccaccacat gaattccata gctttttaaa gcttcttttt tagctgcagc
    21421 actttcatca gcacttccta ctatggcacc tgcatgcccc attcttttac cttttggagc
    21481 agttgcacct gcaatgaatg ctaccacagg tttgctaata ttttctttaa taaatttagc
    21541 cgcttccact tccaaactac caccaatttc acctatcatt acaatagctt tagtttcatc
    21601 atctttttgg aattcactta aaagttcttt ataagcaaga cctatgatag gatcaccacc
    21661 aattcctact gcagtagaaa ttccataacc accttgaact acctgattag cagcttcata
    21721 agttaaagtt ccactttttg aaataagccc cacgcaacct tttttaaaaa taaaacctgg
    21781 cataatacct aacttacatt cttcagaagt gataatacct ggacaatttg gcccaatgat
    21841 tttcataccc tttttattgg catattgctt agcaaacatc atatccttta caggcgtatg
    21901 ttctgtgatt acaactgcaa gcttaatacc cgcatcagct gcttcaatca cgctatcacc
    21961 cacagcaaaa gcaggtacaa agatcaagct cacatcagcc tttgttgctt taaccgcatc
    22021 tgcaacggta tcaaaaactg gtttacctaa atgagtttgt ccacctttat gaggggtgac
    22081 acctccaact atatttgtac cataagccat gcattgctca gcgtgaaaag ttgcttcttt
    22141 acccgtaaaa ccttgaacta ttacttttgt atttttatta accaatatac tcattttcca
    22201 tccttatcct actaaacttt ttacaagctc tgcaccgttt ttaagattgg ttgctgcttt
    22261 gatattttta agatttgaat tatctaaaat tgtctttgct tctgctgcgt tagtaccatc
    22321 aagacgcact acaattggaa tatttacctc aacattctta gtagcttcta aaattccatt
    22381 tgctatccta tcacaacgaa caataccacc aaagatattg ataaatataa cttttacatt
    22441 cttatctctt aaaatgattt caaaagcctt tgcaacagtt tcaggagaag ctcccccacc
    22501 tacatctaag aaatttgcag gttttgcacc actataatta ataatatcca tagttgccat
    22561 tgctagaccc gcaccattta ccatacaagc tacatctcca tctaatttca catagcttaa
    22621 gccaaattca gccgcttctc tttcagcagg attttcttca gtaatatctc taagttcagc
    22681 aatctcagga tgacgataaa gcgcactatc atcaaaactg cattttgcat caagggcata
    22741 aaaatcccct tctgcagttt taattaaagg attgatttca agcatattca tatctttatc
    22801 catgtaaagc ttataaagtt tagctatcat agaaatgagt tttttgcctt catctttatc
    22861 aagtcctaaa actctcgcta cttcaagtcc atgaaacatt ttaaatccaa tttgtggatc
    22921 aatacctact tttgcaattt tttcagggct ttctttggct actttttcta tatccatccc
    22981 tccttcactt gaagcgataa tggtaatttg ctctgccatt ctattaaata aaatagccaa
    23041 ataatactct tttactatat tagcgccact ttctatataa agtttttgca cgagcttacc
    23101 ttcaggtcct gtttgatgag ttgctaaatt cattcctaaa attttacttg cgtaatcttt
    23161 tacctcatct aaattcttag cgattttaac accaccacca agaccacggc ctcctgcgtg
    23221 aatttgagct ttaactgccc aaacactacc gcctaattct ttagcattag atacagcttc
    23281 atctacgcta aatgcaactt ttccctttaa ggtagggatg ccattgtctg caaaaattgc
    23341 ttttgcttga tactcatgta tgttcattta ttctccttta tattgatatt tgattaaaga
    23401 tttttctaat ttgtcttttt cttgcaaact aagatccatt ttcatgattt caatcacacc
    23461 ttcaagtcct aatcttgcca taactcccaa ggctttgttt tgcactccaa attctccatg
    23521 taaaatcaca ctcataggta aaaactcgcc acttcttata gactcaagca ttcttataca
    23581 agcactagca ggggctaaat aagctgaagt tttaagatgt ttgattactt tagctccacc
    23641 tgttttaact tcattttcta aatcatcaaa ttcttcttca tttaaaaatt cgcttatatt
    23701 tttattttta acactcgcat aagattttac caaaaccata tcatcattat gaaaaccaat
    23761 aagtcttgta tccacacttg acattttgac attaagtttt ttggcaagtt catacttaaa
    23821 tcttgcattg tctaaaactc ccgccatggc tataattttc tttgatgaaa aaatcccgct
    23881 ttcataaaga gtattaagta gaaaatccac aggattagtt aaaataataa aaagcggatc
    23941 ttctgtaaaa tctttaattt ttttagcgca atcaagcata atgcttgtat tcaactgaag
    24001 caattcttct ctactttgcc catcttttct agcaaaacct gcactaaaaa gcactatatc
    24061 tgaatttttg gtatgagtat aatctttagt gcaaagtaaa tctatattta aatttaaagc
    24121 agctatgctt tgagtaagtt ctagttcttt tgcataaagc aaatcctcat tgatatctac
    24181 taaaacaatt ttatttgcta tttctcttaa aatcaaagca taagctacgc ttgagcccac
    24241 attgccagcc cctataacag tgattttcat ctttgtccta ttttttctaa aatagcgtta
    24301 aaagttgcac ttggacgcat gattttattt gctttttcat catcaaattt ataataccca
    24361 cccaaatcca ctttcacacc ttgtgcattg ttaaattcgg ctctgatttt ttcttcatta
    24421 gaagaaagct ctagggcaat atctttaaaa aagctttgaa gctccatatc acttgcctgt
    24481 cttgctaaat aatttgcaaa atacattgct aagtaaaaat gacttgttct attgtcatct
    24541 tctttaactt ttcttgatgg agctttatta ttttcaagcc attcgcctat agcctcatca
    24601 agacattctg ctaaaatctt agctttatga ttgctacact tatttgcata aaattccaaa
    24661 cttgcttgca aagccaaaaa ttcacccaaa ctatcccaac gcagatgatt ttcttcaact
    24721 aattgttcta cttgtttagg tgctgaaccc cctgctcctg tttcaaacat agctccacca
    24781 tttaacatag gcacaacaga aagcattttt gcacttgttc caagctctaa aataggaaaa
    24841 agatcggtta aataatccct taaaacatta cccgtgatag aaataacatc tttgccttct
    24901 cggattaact ctaaacttct taaacaagct tcttttggag ttaaaatggc tatattttta
    24961 cccttttctt ttaaacgatt ttgtaccaaa gttatcatga ttttattact agctcttttg
    25021 ctatctaacc aaaaaatagc ttcggctcca ctaagttctg atctttctat acctaaatca
    25081 atccaattta acaccgcatc aaatttagcc tgattagctc tataaatatc accttttcta
    25141 accttatgtt ctaataaaac tttaccctca gaaactattt taaaagttcc ttcttcttta
    25201 gccacaaagg ttttatcgtg cgagccatat tcttgagcct ttttagccat taaacctaca
    25261 ttagatacac tgccaagttt tgaaggattt aaagtgccat ttttatgcaa atcttcaata
    25321 accgcctcat aaatagttgc gtaagtttga tcaggaatta cggcatttgt gtccttttcc
    25381 ttaccttcct tatcccacaa tcttgcgcca tttttaagca ttgcaggcat agaagcatca
    25441 acgataacat cgcttggaac atgaagattt gtgatgcctt tatctgaatt taccatagaa
    25501 atatctgcag atttagctaa aatttcattg tattttttta aaatttcatc ttttttgctt
    25561 gaattttcga tcttacttaa aagctcactt aaaccattat ttggattaat acctaatttt
    25621 tcaaattcat cttgaaattc gataaataat tctttaaaaa atacttttac cgcataacca
    25681 aaaagtatag gatcacttat tttcatcatt gtagctttta aatgcaaaga aaaaagcaca
    25741 tcatcatctt tgcttgcttt aatttctttt gcataaaatt cctgaagttt ttgcacatcc
    25801 ataaaagtag cgtctaaaat ttcatttttt tcaagtttta agccctcttt taaaatttct
    25861 tttttaccat caacgcttgc aaattctata ttagccacac aatcttgatc gattaaaacc
    25921 gctttttcat tagagaaaaa atccccttct ttcatgtaag aaacacgagt ttttgagttt
    25981 ggattaaact caaccacacg ataaggattg ttttttgcat agtcttttac cgcttttgtt
    26041 gaacgacgat ctgaatttcc ttgtcttaat acaggattaa ccgctgaacc taaaactttt
    26101 tgatattttg ttttaatttg caattcttca tcattttttg gctcatctgg gtaatttggt
    26161 aacatataac ccttatcttg caattcttta atcgccgcct taagctgagg aatagaagct
    26221 gaaatatttg gggttttaat aagatttgca tccgatcttt tgacaagctc gcctaaaagc
    26281 tctaaagcat cttcacatct ttgttcctct tttaaatact cactaaaagt agctaaaatc
    26341 cttccagaca aagaaatatc cgaggttttt actcctatat gtgccctact taaaaaagct
    26401 ttcactatag gcaaaaacga ataagtcgca agagctggag actcatctgt taaggtataa
    26461 gtaatttgca tttttagtcc tttaaaatac ttatttttat tttcattttt aagtatatta
    26521 caaataaaaa aaaatgcaag agtaagttta aagtttgttt tagttttcaa acaaacttta
    26581 aatattttta attaagtaaa ttagcaggaa gttgtatgat atttttaata agattaaaag
    26641 gggtttttag ggcatctgtt aaaatttcgg tatgaaattt aggatcatct atacttccat
    26701 ctatttttaa gtttgtgcta atttcttgat ttttacctaa aattacataa tttaaaattg
    26761 gaaccttgga tatagcttct gaagctgatt ttaaagtttt aagctctaaa ctaaaatcca
    26821 ctgtatttaa tcttaaattt gctgatccta aaccatatat atctacacta tcgccattta
    26881 aattaatagc tgaaacactt aaaagatctt tttttctatt aaaaataatc tttccatcat
    26941 gtaagcttaa acctttttga ttaaaagttg gagatttaaa catcaataaa cttggtacag
    27001 tatcgataaa ggaaataagc tgatttatac ctcttaaatc cttcacataa gtatttttaa
    27061 aatcgatctg tccatcaaaa tactctaatc cacttccttt tatacttaag ttaaacactc
    27121 catcttgaac agcttgtttt tgtaaaaact catttaaata attatcatca atattgctaa
    27181 cgtttaaatt taaatcatta gaagaataat aaagatcaaa ttttgcattt cctctagaac
    27241 ctttaagatc caaagcatta ccttttaaat cagcctctac cctatcaaaa gccaaagttt
    27301 tattagaatc tggcaaaatt aaagctacat ttgctccacc aaaactaata ttttgggtat
    27361 tagtagaaat atcaaatgtt gaatttgaag agttggaatc ttttttataa atataactta
    27421 aatttttcaa atgaatttct ttattatcag aacttatttt agcacttgct gtatcacttt
    27481 gagtatgaat ttccataatg cccttatttt ttacaatatc aaagctatca ttttcataag
    27541 gagtttgacc gttgataagt aaattatttt taaaataagc atcattaaca cttgcattga
    27601 aatcttcaaa atttaaagtt ttataataaa catttttagc atcaataaac ccaaactttt
    27661 taagtaatgg agaaaatgaa aataaaatct taggattatt aagattagcc tcaagtccat
    27721 ctttaaaatt taaaatcaaa ttccactgag gaatgctaat gttaacattt tgcgaataat
    27781 ctaattttac ttctacattt tgatttttta aatctaaaag ctccccattg tcaaaataaa
    27841 gccttgaaat ctgagtattg aaatttcctt gttgtttttg ca
//
LOCUS       DAEDTT010000005        27363 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.005, whole genome shotgun sequence.
ACCESSION   DAEDTT010000005 DAEDTT010000000
VERSION     DAEDTT010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27363
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.005"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            458..1970
                     /locus_tag="KLC54_000181"
     rRNA            458..1970
                     /locus_tag="KLC54_000181"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            2073..2148
                     /locus_tag="KLC54_000182"
     tRNA            2073..2148
                     /locus_tag="KLC54_000182"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2106..2108,aa:Ala,seq:tgc)
     gene            2157..2233
                     /locus_tag="KLC54_000183"
     tRNA            2157..2233
                     /locus_tag="KLC54_000183"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2191..2193,aa:Ile,seq:gat)
     gene            2711..5764
                     /locus_tag="KLC54_000184"
     rRNA            2711..5764
                     /locus_tag="KLC54_000184"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            6039..6155
                     /gene="rrf"
                     /locus_tag="KLC54_000185"
     rRNA            6039..6155
                     /gene="rrf"
                     /locus_tag="KLC54_000185"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(6336..7544)
                     /locus_tag="KLC54_000186"
     CDS             complement(6336..7544)
                     /locus_tag="KLC54_000186"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HBD9176600.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQKAKNLQSEYDFFYDIMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVIGGNVGTPLAELDPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVILPKIYANTPTKAHKISYKDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYELLNSFVMEKNKLEELKDSQNR
                     LWVNDTKATNESAVMAALNRYKDKKIHLIIGGDDKGVDLSNLFDFMKNFNIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYVERG
                     KVFKECVNKI"
     gene            complement(7544..8605)
                     /locus_tag="KLC54_000187"
     CDS             complement(7544..8605)
                     /locus_tag="KLC54_000187"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HBD9176601.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKDNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIVFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAII
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            8685..10163
                     /locus_tag="KLC54_000188"
     CDS             8685..10163
                     /locus_tag="KLC54_000188"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HBD9176602.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLQKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDTCLGEIVECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            10235..10978
                     /gene="fabG"
                     /locus_tag="KLC54_000189"
     CDS             10235..10978
                     /gene="fabG"
                     /locus_tag="KLC54_000189"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HBD9176603.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELGYLVNNAGVTNDKLALRM
                     KLEDFSSVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            10985..11395
                     /locus_tag="KLC54_000190"
     CDS             10985..11395
                     /locus_tag="KLC54_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HBD9176604.1"
                     /translation="MMDLKEIAQFLDDNVPAFLATLGTCGNPRVRPIQSPLLVRDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFEKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGEFKLFKA"
     gene            11732..13567
                     /locus_tag="KLC54_000191"
     CDS             11732..13567
                     /locus_tag="KLC54_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HBD9176605.1"
                     /translation="MGEFSRRDFIKTACISVGALAASSSGVYALDDSSKMDKDTNLPS
                     CDVLVIGSGGAGLRAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVMDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FGKGAKTHELAQKWQARFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKNLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDVVVTEFSLDGRRVQ"
     gene            13564..14529
                     /locus_tag="KLC54_000192"
     CDS             13564..14529
                     /locus_tag="KLC54_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HBD9176606.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEDEIEGHKDLVKMIKAAQEAAVKE"
     gene            14533..15390
                     /locus_tag="KLC54_000193"
     CDS             14533..15390
                     /locus_tag="KLC54_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HBD9176607.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLTKAKNTLDKGAKERIN
                     TFLAQGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDAF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTSSKARLPMIHLSQLVGLALGLSKEMVGLDY
                     NIIDASKIA"
     gene            complement(15414..16082)
                     /gene="tenA"
                     /locus_tag="KLC54_000194"
     CDS             complement(15414..16082)
                     /gene="tenA"
                     /locus_tag="KLC54_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HBD9176608.1"
                     /translation="MMLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELNIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVSAQKFQKLSEIFHTATRLEVAFWEHSLRM
                     ELNL"
     gene            16192..16425
                     /gene="acpP"
                     /locus_tag="KLC54_000195"
     CDS             16192..16425
                     /gene="acpP"
                     /locus_tag="KLC54_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HBD9176609.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            16451..17665
                     /locus_tag="KLC54_000196"
     CDS             16451..17665
                     /locus_tag="KLC54_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HBD9176610.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDAGFSEELDKEEFGIVS
                     AAGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVIGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVISVMALRDGVVPPTINQLVKDDECDLDYVPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            17667..18605
                     /locus_tag="KLC54_000197"
     CDS             17667..18605
                     /locus_tag="KLC54_000197"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HBD9176611.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADRLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEAAAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            18757..20811
                     /locus_tag="KLC54_000198"
     CDS             18757..20811
                     /locus_tag="KLC54_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006655032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HBD9176612.1"
                     /translation="MKFKKSLLCFLILSGALLKAEEKYQLNDVVVSASGFEQDLVDAP
                     ASISIITKEELEKKPIKDIGEAIGDIPGVDVTMNKTGTYDFSIRGFGSSYTLVLIDGK
                     RQSVANGFYDNGFSGSESGYLPPLSMIERIEVIRGPASTLYGSDAVGGVINIITKKNP
                     DKTEANIEFNTLLQQHSNHYGNAGGFNAYVATPLIEDTLSISARLKYYDKAASDLKWP
                     TPVWNNSQQRPDNYQIASHSPGAFTSLGFGSRLNWTVDDKNNIYFDIERYINEISVNS
                     TSSRAIKSERQLFKDNIVLNHDGNYDFGSTNSYLQYGSTKDKELHSQIWVGEGKVVLP
                     WNLGQYGNLVNTFGARIDYEMLKNDQASAGSQIRGKNLDQTTVALYGENEYFITDDLI
                     FTTGLRYIYSDLFDSEFTPRVYLVYHLNDNIAFKGGVSKGYKTPAAKELTNGYYNYSN
                     DNAYFGNPDLKPEESINYELGVDFRIFDFAHYSITGFITDFTNQISSEDLTGMQNGIN
                     CSNGTVCTRPINLGKTQTKGIEFAFNTKTYNGFSLNSSYTFMDNRYKDGQKNWFGGDR
                     IENLPRHIAMLKLNYERGKFSSYIKTRARLDTIAKAKGGGNGSLPWQKYKPFYIVDLG
                     INYKINKQSSLSFVVQNLFDKNFFDPQVTKWAGANPAGYANRYQDYTEGRSFWLSYKY
                     DF"
     gene            20894..21481
                     /locus_tag="KLC54_000199"
     CDS             20894..21481
                     /locus_tag="KLC54_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HBD9176613.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGKFCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDNMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFAEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNIIRTPLLDFAYMWFLKEKWEKY"
     gene            complement(21523..22620)
                     /locus_tag="KLC54_000200"
     CDS             complement(21523..22620)
                     /locus_tag="KLC54_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HBD9176614.1"
                     /translation="MFGSKINHSDLQKLEEENKNLAHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIVQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGDITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(22630..22845)
                     /locus_tag="KLC54_000201"
     CDS             complement(22630..22845)
                     /locus_tag="KLC54_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HBD9176615.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
     gene            complement(23030..23224)
                     /locus_tag="KLC54_000202"
     CDS             complement(23030..23224)
                     /locus_tag="KLC54_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HBD9176616.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            23364..24011
                     /gene="rpe"
                     /locus_tag="KLC54_000203"
     CDS             23364..24011
                     /gene="rpe"
                     /locus_tag="KLC54_000203"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HBD9176617.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFIDLFIPLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLVHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            24008..24769
                     /locus_tag="KLC54_000204"
     CDS             24008..24769
                     /locus_tag="KLC54_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HBD9176618.1"
                     /translation="MSSQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFTLKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPENITELTGITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELINFTKTARIKQK"
     regulatory      24791..24895
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            24952..26244
                     /gene="thiC"
                     /locus_tag="KLC54_000205"
     CDS             24952..26244
                     /gene="thiC"
                     /locus_tag="KLC54_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HBD9176619.1"
                     /translation="MKTQMNYAKEGVFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFDIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQIGAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGVQVMIEGPGHMAINEIEVN
                     MQLEKRLCKGAPFYVLGPLVTDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     gene            complement(26236..26754)
                     /locus_tag="KLC54_000206"
     CDS             complement(26236..26754)
                     /locus_tag="KLC54_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176620.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKSKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPKKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(26744..27271)
                     /locus_tag="KLC54_000207"
     CDS             complement(26744..27271)
                     /locus_tag="KLC54_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176621.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDDEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
BASE COUNT         9107 a         3866 c         5507 g         8883 t
ORIGIN      
        1 aatacttata taaatactta cacaaatatt tatactattt aatcctttat ttaatcccct
       61 tttaagttta attggttata ctttcatttc cttttttgaa aaaaggactt aaaatctttt
      121 aaattataaa gtttcactag cttagtagat tttataaatt aactcttttg gtttttatct
      181 tataaactaa aagctttttt ataaatcttg ttttttaatt taaaaacttt tcttttaaaa
      241 atgatttttt gttttgttct tttaaattag tattgttatt caaatcttat tagtcaatct
      301 ttgaaatcta aataagtgat cgattgagcc agataaagat ttaggcataa gcaattatgt
      361 aaaatctatt caatctaata attaaaaaga ttaaaagctt ttcttttaat ctttcataac
      421 tttttctttg aagaaaaaga ttaaactatc tataattttt atggagagtt tgatcctggc
      481 tcagagtgaa cgctggcggc gtgcctaata catgcaagtc gaacgatgaa gcttttagct
      541 tgctagaagt ggattagtgg cgcacgggtg agtaaggtat agttaatctg ccctacacaa
      601 gaggataaca gttggaaacg actgctaata ctctatactc ctgcttaaca caagttgagt
      661 agggaaagtt tttcggtgta ggatgagact atatagtatc agctagttgg taaggtaatg
      721 gcttaccaag gctatgacgc ttaactggtc tgagaggatg atcagtcaca ctggaactga
      781 gacacggtcc agactcctac gggaggcagc agtagggaat attgcgcaat gggggaaacc
      841 ctgacgcagc aacgccgcgt ggaggatgac acttttcgga gcgtaaactc cttttcttag
      901 ggaagaattc tgacggtacc taaggaataa gcaccggcta actccgtgcc agcagccgcg
      961 gtaatacgga gggtgcaagc gttactcgga atcactgggc gtaaagggcg cgtaggcgga
     1021 ttatcaagtc tcttgtgaaa tctaatggct taaccattaa actgcttggg aaactgatag
     1081 tctagagtga gggagaggca gatggaattg gtggtgtagg ggtaaaatcc gtagatatca
     1141 ccaagaatac ccattgcgaa ggcgatctgc tggaactcaa ctgacgctaa ggcgcgaaag
     1201 cgtggggagc aaacaggatt agataccctg gtagtccacg ccctaaacga tgtacactag
     1261 ttgttgggat gctagtcatc tcagtaatgc agctaacgca ttaagtgtac cgcctgggga
     1321 gtacggtcgc aagattaaaa ctcaaaggaa tagacgggga cccgcacaag cggtggagca
     1381 tgtggtttaa ttcgaagata cgcgaagaac cttacctggg cttgatatcc taagaacctt
     1441 atagagatat gagggtgcta gcttgctaga acttagagac aggtgctgca cggctgtcgt
     1501 cagctcgtgt cgtgagatgt tgggttaagt cccgcaacga gcgcaaccca cgtatttagt
     1561 tgctaacggt tcggccgagc actctaaata gactgccttc gtaaggagga ggaaggtgtg
     1621 gacgacgtca agtcatcatg gcccttatgc ccagggcgac acacgtgcta caatggcata
     1681 tacaatgaga cgcaataccg cgaggtggag caaatctata aaatatgtcc cagttcggat
     1741 tgttctctgc aactcgagag catgaagccg gaatcgctag taatcgtaga tcagccatgc
     1801 tacggtgaat acgttcccgg gtcttgtact caccgcccgt cacaccatgg gagttgattt
     1861 cactcgaagc cggaatacta aactagttac cgtccacagt ggaatcagcg actggggtga
     1921 agtcgtaaca aggtaaccgt aggagaacct gcggttggat cacctccttt ctagagtaca
     1981 aagtaataag tctcacaact attacttcaa tatataaact caattgattc ttgtttagat
     2041 ttcaaagatt gatgataaag ctaattgttt atggggaatt agctcagctg ggagagcgcc
     2101 tgctttgcac gcaggaggtc agcggttcga tcccgctatt ctccaccatt tattaagggc
     2161 ctatagctca gctggttaga gtgcacccct gataagggtg aggtcacaag ttcaagtctt
     2221 gttaggccca ccataaaaaa gatttgaata aaaaagcttt aaaatctaaa gcaagtatat
     2281 aaagtagatt aaatataaaa tataaactct atacttagat ttatttttat ctttagctat
     2341 aaaagaatat actttaatag atataaatag catatacatt atgtatttat atttataatg
     2401 agattatatt aatatatata cttcctttag gttttaaacc taatgttctt tttaattatc
     2461 attgttaaga gtcacaagca agttttaata aaaacaattt tacaggactt gttaaaggat
     2521 aaaacctatt tatcttttct ttagttatta ctactaaaga caagtttcaa actcacagct
     2581 tagttgagac taaatcattt agttttatat taagtgtttg aatgctttcc gtcttaagat
     2641 aaagaagtct tatcataaaa actttaacaa ggaagtgatg cgttttagaa tcaataataa
     2701 aaggtaaaaa aggtaagcta ctaagagcga atggtggatg ccttgactgg taaaggcgat
     2761 gaaggacgta ctagactgcg ataagctacg gggagctgtc aagaagcttt gatccgtaga
     2821 tttccgaatg gggcaaccca atgtatagag atatacatta cctatatagg agcgaacgag
     2881 gggaattgaa acatcttagt accctcagga aaagaaatca atagagattg cgtcagtagc
     2941 ggcgagcgaa agcgcaagag ggcaaaccca gtgcttgcac tgggggttgt aggactgcaa
     3001 tgtgcaagag ctgagtttag cagaacattc tggaaagtat agccatagag ggtgatagtc
     3061 ccgtatgcga aaaacaaagc ttagctagca gtatcctgag tagggcggga cacgaggaat
     3121 cctgtctgaa tccgggtcga ccacgatcca accctaaata ctaataccag atcgatagtg
     3181 cacaagtacc gtgagggaaa ggtgaaaaga actgaggtga tcagagtgaa atagaacctg
     3241 aaaccatttg cttacaatca ttcagagcac tatgtagcaa tacagtgtga tggactgcct
     3301 tttgcataat gagcctgcga gttgtggtgt ctggcaaggt taagcaaacg cgaagccgta
     3361 gcgaaagcga gtctgaatag ggcgcttagt cagatgctgc agacccgaaa cgaagtgatc
     3421 tatccatgag caagttgaag ctagtgtaag aactagtgga ggactgaacc cataggcgtt
     3481 gaaaagcccc gggatgactt gtggataggg gtgaaaggcc aatcaaactt cgtgatagct
     3541 ggttctctcc gaaatatatt taggtatagc gttgtgtcgt aatataaggg ggtagagcac
     3601 tgaatgggct agggcataca ccaatgtacc aaaccctatc aaactccgaa taccttatat
     3661 gtaatcacag cagtcaggcg gcgagtgata aaatccgtcg tcgagaggga aacaacccag
     3721 actaccagct aaggtcccta aatcttactt aagtggaaaa cgatgtgaag ttacttaaac
     3781 aaccaggagg ttggcttaga agcagccatc ctttaaagaa agcgtaatag ctcactggtc
     3841 tagtgatttt gcgcggaaaa tataacgggg ctaaagtaag taccgaagct gtagacttgc
     3901 acacaactta gattatttaa gtttagaata tgagaaacta agttatgttt agttatattt
     3961 ttactgattt ttatagagta aagatagaaa taaaacttag taaaatcagt aaaaatattc
     4021 ttaggctaaa gttaagtagt ttaagttgtg tgcaagtggt aggagagcgt tctatttgcg
     4081 tcgaaggtat accggtaagg agtgctggag cgaatagaag tgagcatgca ggcatgagta
     4141 gcgataatta atgtgagaat cattaacgcc gtaaacccaa ggtttcctac gcgatgctcg
     4201 tcatcgtagg gttagtcggg tcctaagtcg agtccgaaag gggtagacga tggcaaattg
     4261 gttaatattc caataccaac attagtgtgc gatggaagga cgcttagggc taagggggct
     4321 agcggatgga agtgctagtc taaggtcgta ggaggttata caggcaaatc cgtataacaa
     4381 tactccgaga actgaaaggc tttttgaagt cttcggatgg atagaagaac ccctgatgcc
     4441 gtcgagccaa gaaaagtttc taagtttagc taatgttgcc cgtaccgtaa accgacacag
     4501 gtgggtggga tgagtattct aaggcgcgtg gaagaactct ctttaaggaa ctctgcaaaa
     4561 tagcaccgta tcttcggtat aaggtgtggt tagcttcgta ctaggattta ctccgaaagc
     4621 gaagaaactt acaacaaaga gtccctcccg actgtttacc aaaaacacag cactctgcta
     4681 actcgtaaga ggatgtatag ggtgtgacgc ctgcccggtg ctcgaaggtt aattgatggg
     4741 gttagcatta gcgaagctct tgatcgaagc ccgagtaaac ggcggccgta actataacgg
     4801 tcctaaggta gcgaaattcc ttgtcggtta aataccgacc tgcatgaatg gcgtaacgag
     4861 atgggagctg tctcaaagag ggatccagtg aaattgtagt ggaggtgaaa attcctccta
     4921 cccgcggcaa gacggaaaga ccccgtggac ctttactaca gcttgacact gctacttgga
     4981 taagaatgtg caggataggt gggaggcttt gagtatatga cgccagttgt atatgagcca
     5041 ttgttgagat accactcttt cttatttggg tagctaacca gcttgagtta tcctcaagtg
     5101 ggacaatgtc tggtgggtag tttgactggg gcggtcgcct cccaaataat aacggaggct
     5161 tacaaaggtt ggctcagaac ggttggaaat cgttcgtaga gtataaaggt ataagccagc
     5221 ttaactgcaa gacatacaag tcaagcagag acgaaagtcg gtcttagtga tccggtggtt
     5281 ctgtgtggaa gggccatcgc tcaaaggata aaaggtaccc cggggataac aggctgatct
     5341 cccccaagag ctcacatcga cggggaggtt tggcacctcg atgtcggctc atcgcatcct
     5401 ggggctggag caggtcccaa gggtatggct gttcgccatt taaagcggta cgcgagctgg
     5461 gttcagaacg tcgtgagaca gttcggtccc tatctgccgt gggcgtaaga agattgaaga
     5521 gatttgaccc tagtacgaga ggaccgggtt gaacaaacca ctggtgtagc tgttgttctg
     5581 ccaagagcat cgcagcgtag ctaagtttgg aaaggataaa cgctgaaagc atctaagcgt
     5641 gaagccaact ctaagatgaa tcttctctaa gctctctaga agactactag tttgataggc
     5701 tgggtgtgta atggatgaaa gtcctttagc tgaccagtac taatagagcg tttggcttat
     5761 ctttaataaa gcatcacttc cttgttaagg tttttaagaa gactttgaat ataaataata
     5821 tttagagttt agtagaaatc tttcaagtag agtttgtatt agaacttgct cttaacattg
     5881 ttttttaagt attctatata aaaacttatc aaagataaaa gataagaaaa aaataaataa
     5941 aaacaaaaga agaaagagaa taaagaaaaa agtaaagaaa taaaagatta agctttattt
     6001 tttaaattca atctttcaaa gaatatttaa ataacaatgt ccgtgattat acagatgtgg
     6061 aaacgccttg ctccatcccg aaccaagaag ctaagcacat cgtgggtgat gatactacgc
     6121 cttactggca gggggaaagt agctcattgc ggacttgtta aatgtcttca ttacttactt
     6181 tatatataaa tcctatgttt atttttattg ttgttttaga tggtgtttga aatagtgttt
     6241 aaaaaagagt ttgctgctgg ttagggtttt tagagagaat agggtgtttt tagggtttgg
     6301 aaagtttaat atatttgtat ggattgtata ataaattaaa ttttattcac acattcttta
     6361 aagacttttc cacgctctac gtaagagttg aactgatcta aacttgcgca agcgggactt
     6421 aaaagagcca cttcattgac tcttaagtga tttgaaattt catttacagc tttagataaa
     6481 acttcacatt tataggcttt caaattcgct ttttttgcat aatcaagcat tttttcggta
     6541 ctaataccta tagcatagag ttctatgtta aaatttttca taaaatcaaa taaattgcta
     6601 agatctacac ccttatcatc tccccctatg ataagatgga tttttttatc tttatagcga
     6661 ttaagtgcag ccattaccgc gctttcattt gtggctttag tgtcatttac ccaaagtcta
     6721 ttttgactgt ctttaagctc ttcaagttta tttttttcca ttacaaagct atttaaaagc
     6781 tcatagctta aagtatcaag tagaattttt tctatagcta aagccatgat agcatcgagt
     6841 aaaaaaggac ttttaaagga aattttttcc gtatcaatgc caaatttaac agctagatct
     6901 ttttcatctt tatagcttat tttatgagct tttgttggag tatttgcata aattttaggc
     6961 agtattacta catcgcattc attcattctt tttaaaacgc ttagcttatc ttgaacataa
     7021 ttatcaaaac ttccatgcca agaaagatga tcaggactta taggtaaaag tgcataaatt
     7081 tcaggtttag ctttatgagt gtagtgtagg gtgaaagatg aagtttcaag tatccaaagt
     7141 tttgcataag gatcaagctc tgctaaagga gttccaacat ttccacctat aacagcacca
     7201 atgtgtgata ataaatgtgt agccatttga gtggtagtag ttttgccatt ggttccgctt
     7261 atccaaacgg attttggcat gatatcataa aaaaagtcat attcgctttg taaatttttt
     7321 gctttttgaa tgagtttgtg ctttggtgga aaacctggac taggaatttc aatatcgctt
     7381 aaattatcat caaaatcatt aggatttaaa agtaaatttc ctagtgtatc tttttttgtt
     7441 tctgtaaaat gatcatcata gatatcaaaa ggcccaaatt tatctaccaa attttcagca
     7501 atagcgcgtg tggtttttcc gtatccaaaa agtgaaattt tcattatctt agctttattg
     7561 atgcaagtgc aagtaaattt gaaagtaagg ctatcatcca aaaacgcact ataattttat
     7621 tttctaccca gccaactttt tcaaaatgat gatgaatagg tgccatttta aatactcttt
     7681 tattaaaaat tttaaaactt ccaacttgta aaattacaga aacagtttca agaacaaaaa
     7741 caaaacctat gagtaaaagt aaaatttcat ttttgctaat gatagctaaa aatcctatga
     7801 atccacctaa agctaaactc ccgctatccc ccataaaaac ctgcgcagga taacagttgt
     7861 accataaaaa tcccattaaa gcaccgatta atgcagcaca aataatcact acttcaccaa
     7921 gtccttgaat ttttggcaaa agtaaatatt cactataatt taaatttccg ctcaaatata
     7981 agaatatccc taaagtagat aaagaaaaaa tacttggaac tgtagctaag ccatcaagtc
     8041 catcggttaa atttacagca ttagagctag aaattaaaac caaaatccaa aaaacaatgg
     8101 caaaaatttc catatcaaaa agagggtgtt tgtaaaaagg tataaaaagt tccgtgctaa
     8161 gctctgaact aaaatataaa ggtaagatgc aaataagtcc agcgatgatt tgtgctaaaa
     8221 gcttcattct tggactaagt cctgaatgat tatctttttt tagaactttg cctaaatcat
     8281 ctatgagtcc tattaaacaa aaaagtatca aacaaagtaa agcacttata gcaaaaatat
     8341 tatcaaattt gatacaaaat aaacttgcga ttactgcaga actgatgaaa ataagcccac
     8401 ccatggttgg agtatggcat ttggttttat gagtttctgg ggcgtattcg taaataggtt
     8461 gactagcatt tttagctttt gcccaagtaa taaatttagg cattaaaaat aaagataaac
     8521 ataaagcgat aaaaaatgca aatcctgcac gcacactaat ataagtaaaa aaagcataat
     8581 gacttaaatc tgaaagataa tacaaaacct agccttcttt ttggttttta aaagtttaat
     8641 tttagtaaaa tctaaccaaa aaaattctta taaaagagag aaaaatgaag caaaaatgcg
     8701 ttttaattat tacagatgga atagggtata ataagaatag taagtttaat gcttttgaag
     8761 cagctaaaaa accaagttat gaaaagcttt ttaaggaagt cccaaattct ttactaaaaa
     8821 cgagtggttt agctgtaggt ttgccagaag ggcagatggg aaatagtgaa gtagggcata
     8881 tgtgtatagg aagtgggcgt attatttatc aaaatttagt gcgtattaat aaagccattg
     8941 aaaacaaaga acttgaaaaa aatgagaatt tacaaaaact tttagcaaaa tgtaaaagag
     9001 tgcatattat agggctttat agtgatggcg gggtgcattc tatggatacg cattttaaag
     9061 ccatgcttga aatttgtgcg aaaaatggca atgaagtttt tgctcacgca atcactgatg
     9121 ggcgtgatgt aagtccaaaa agtggcttaa atttcataaa agatttaaaa gaattttgtg
     9181 aaaacttagg cgtgcatttt gctacgcttt gtgggcgttt ttatgctatg gatagagata
     9241 agcgttggga tagggtaaaa gagtattatg agtgcttgtt aggtaaggct tataaagtgc
     9301 caaatttatt agaataccta caaaaatctt acgatgaaaa tgttactgat gagtttatca
     9361 aagcagctca aaatgagaat tacaagggca tgagagaaga agatggcatt atctttatca
     9421 attttagaaa tgatagaatg aaacaacttg ttgaagtgtt aaattctaag gattttaaag
     9481 agtttgaacg cgaaaaaatc tttgaaaatt tacttactat gagtgtttat gatgataaat
     9541 ttaaactccc tgtgcttttt gaaaaagaaa aaattgaaaa tactttagcc caagtgattt
     9601 ctaaagcagg gcttagtcag cttcataccg cagaaaccga aaaatatgcc catgtaactt
     9661 tcttttttaa tggcggaaaa gaagagcttt tagaaaatga aacaagggtt ttaatcccaa
     9721 gccccaaggt aaaaacttat gatgaaaaac cccaaatgag tgcttttgaa gtgtgtgatg
     9781 cagtgaaaaa aggcatagaa aagggtgagg attttatagt ggtaaatttt gcaaatggag
     9841 atatggttgg gcatacaggt gattttaatg ctgctataaa ggctgttgaa gcggtggata
     9901 cttgtttggg cgagattgta gaatgtgcaa aaaagcatga ttatgctttt atcattacaa
     9961 gcgatcatgg aaattgcgaa gctatgcaag atgaaaaagg aaatttgctt accaatcaca
    10021 ctacttttga tgtttttgtt tttgtgcaag caaagggagt ttcaaagatt aaagataata
    10081 tggggcttag caatatcgct gcaagtgtgc ttaaaatttt agacttagaa attccaaaag
    10141 aaatgaatga ggctttgttt tagtttgttt gcctttttta taagaaattt gttaagattg
    10201 caatttttaa aattaaactt attaaggata gataatgaaa tttagcggaa aaaatgtttt
    10261 aattaccgga gcaagtaagg gaataggtgc ttctattgca aaaactttgg cgggttttgg
    10321 acttaaagtt tggatcaatt atcgttcaaa acctgaactt gcagatgctt taaaagatga
    10381 aattattgca agtggtggcg ttgctgctgt gattaaattt gatgcaagca aagaagatga
    10441 gtttgaaaat ggtgtaaaaa ccatagtgga gagcgatgga gagttaggtt atcttgtaaa
    10501 taacgcaggc gttacaaatg ataaacttgc tttaagaatg aaattagagg actttagcag
    10561 tgttgtggat acaaatttaa gttcagcttt tttaggttgt agagaagctt taaaaaccat
    10621 gagtaaaaaa cgctttggtg ctgttgtaaa tatcgcttct attgtcggag aaatgggcaa
    10681 tgctggacaa gtaaattatt ctgccagtaa aggtggaatg atagctatga ctaaatcttt
    10741 tgctaaagaa ggagcaagta gaaatttacg ctttaactgt gtaactccag gtttcataaa
    10801 aagcgatatg actgaagttt taagtgatga aatcaaacaa acctatcaag acaatatccc
    10861 tttaaaacgc tttgcagaac ctgaagaagt ggctaattgt gtagcgtttt tacttagtga
    10921 ttatgcctct tatgtgacag gcgatgtgct taagatcaat ggtggtttat atatgtaagg
    10981 aaaaatgatg gatttaaaag aaatagcaca atttttagat gataatgtac cagcattttt
    11041 agccacttta ggaacttgtg gaaatcctag agtgcgtcct atacaaagtc cattgcttgt
    11101 gagagataaa atttattttt gcacagcaaa tacaaaagga ctttttaagc atataaaaaa
    11161 ttataatggt attgaatttt gttcttgtgc aaaagatggg acttttttaa gacttagggc
    11221 taatgcggtt tttgaaccaa atttagaagt taaaaaaatg atgtttgaaa aatatcctta
    11281 tcttgtaaat ctttatgaaa ctccgcaaaa tccaaaattt gaagtttttt atcttgatca
    11341 tttaagcgct agaatgcaat ttatgaatgg agaatttaag ctttttaagg cttaatgatt
    11401 tgataatttt attaactata tattaattaa gataaatatt atcttaatta atattaactt
    11461 tttgttattt ttttaaggta taatcattcc gtttaatttg caaggaatag attatgatat
    11521 attgcaaaaa ttttttaata tttattttat tatattcatc tatcttcttt gattgcttat
    11581 cttatgcttt tttatattta ttaaattata aatttgtttt taatccattt tatattgaaa
    11641 ggagagtttg tttttggatt tttggcatgc ggttatgtaa gattgactta cattaaaaat
    11701 tattattaat tttttaaata aggagaatga tatgggtgaa ttttctagaa gagattttat
    11761 aaaaacagcc tgtattagtg taggagcttt agctgcaagt tcaagtggag tttatgcctt
    11821 agatgattca tctaagatgg ataaagatac aaatttacct tcttgtgatg ttttggtaat
    11881 tggatcaggt ggagcaggtt tgcgtgctgc agccgcagtg agaaaagaaa atccaaaatt
    11941 aagcgttgta gtagctacaa agatgatgcc atcgcgtaac gcaacttgta tggcagaggg
    12001 tggaattaat ggagttactg atttttctaa tggagattcc tataaattac atgcttatga
    12061 tactatcaaa ggcggagctt atttggtaga tcaagacgcg gctttaaaat tttgtgaatt
    12121 agctggaaag gctattttta atatggattt tataggaacc ttgttttcaa gaaatgagca
    12181 aggtggagta gctcagcgtt taatgggagg agcttctaag aaacgctgta attattctgc
    12241 agataaaaca ggtcatattt taatgcattc ttgtttagat gatgctatta gtagtggtgt
    12301 gaaattttta atggatcatg aacttttgga tataggtgtt atggatggaa aatgcgaggg
    12361 tgtcgtttta agagatatac aaagcggtgg aatttatcct gtattatgca aagctttggt
    12421 gattgctaca gggggataca caaggatatt ttataataga acttcaactc cttttattgc
    12481 cacaggagat ggtgtggcag ctgctcttag agcaggactt ggttttgaag atcctgagat
    12541 gatacaattt cacccaacag gagttgcaaa tggtggaact cttattacag aagcggcgcg
    12601 cggtgaaggg ggatatcttt taaataatcg tggtgagcgt tttatgaaaa attaccatga
    12661 aaaaatggag cttgccccgc gagatgtagt tgcgcgtgct atagaaacag aaattcgcga
    12721 aggtagaggt tatggcgagg gacttggagc ttatgttttg tgcgatgtac gccacttagg
    12781 aaaagaaaaa attttaaaag atttaccaaa aattcgtcac actgcaatgc tttttgaaaa
    12841 tattgattta gtggatactc ctgtacctat ccgtccaacg gcacattatt ctatgggtgg
    12901 aattgaagtg gctaaatttg aagatatgag tactaaaatt gctggaattt atgtaggtgg
    12961 agaagcttct tgtatttcta tacatggagc caatagacta gggggaaatt ctttagccga
    13021 tgcagttgta actgggcatt tagcaggcat tggtgcgaca aattatgcca aagatgcaag
    13081 ttttggaaaa ggggcaaaaa ctcatgaact tgctcaaaaa tggcaggcta gatttaaaga
    13141 aattacaaat aatggcggaa atggtcaaga aatgtatgaa ttgcgagaag agctaggaag
    13201 tcaaaattgg gataatatgg ggatttttag aactcaagaa aaactcgatc ttctagcaaa
    13261 aaatttagaa gatatacaag caagatatga aaaaattcgt attccaaatc ctaatgaagt
    13321 gatgaatact gcttttacag attatgtaga gcttggtaat ttgattttac tttctcgctg
    13381 tgcttgttta gcagctagaa atagacttga aagtcgtggg gctcatacta gagaagatta
    13441 tccaaagcga gatgataaaa atttcttaaa acatagcatt gtaaatttag aaaatgatga
    13501 attaaaactt agttataaag atgtcgtggt aactgagttt tcacttgatg gaaggagagt
    13561 acaatgaaaa tcatcataga tcgttttaat ggcaaggaaa aatatgaaca aagttatgat
    13621 attgatgata aggatataca aggaaaaact ctgctctctc ttttgctttt tattaaaaaa
    13681 acaaaagata ttactttaaa ttttaccgcc tcttgtcaat ctgcgatttg tggggcttgt
    13741 gcagttcgtg tgaatgggca ttcttatctt gcttgtgata ctaaaatgca agatttgtta
    13801 aaagaatatg ataatccttc aagtatacgc atttctccgc ttggaaattt tagagtaatt
    13861 tctgatttaa ttgtggattg ggagccttct atagaaaatt taagaaaaat tcgtcctgcc
    13921 atggtggcaa aaaatgaatt ttcagcggaa aagggctgta aacaaagtca agaagaattt
    13981 gatcgtatta gcaagcaatg ggattgtatt ttatgtggta gctgtgcttc agagtgtaat
    14041 aaattagaag cagatagtag cgattatatg caaccttttg tttttactca tgcttggcgt
    14101 gcagcggcag actctcgagg taaggatcct atgttgcatg taaaacccag cgtaatgaat
    14161 ggactttggc tttgtgttca ttgtcaagag tgcgctgatc gttgtccaaa gggtataagt
    14221 tcagtaagtg atatagcaaa tttaagagtg atggcgatta aaaaaggttt aaatgaaggc
    14281 ttagggcctg atcatgctga agctttttat aaagatttag ttgaaggttc aggacgcttg
    14341 aatgaaattt atcttgcttt gcgttctgag ggtgttatag gttctatggg taaaacagat
    14401 atagctttta aacttatgcg tgcaggaaaa atgaatccta tgcatgtttt tggcgaggat
    14461 gaaatagaag gacataaaga tttggttaaa atgataaagg cggcacaaga agctgctgtt
    14521 aaggagtaaa atatgcaaaa agaatacgct ttttttccag gttgtgtttt atctcaagct
    14581 gcaaaagaat ctaaaatttc acttgaagct attgcaccta ttttgggttg gaagttgaat
    14641 gaaattaagg ggtggagttg ttgtggggct tctcaagcgc agtgtgttga tcctattgcg
    14701 actttggtag ctaatgcaag aaatattgct ttagcagaag agatgaaaat gccaatgctt
    14761 acaacttgta gtacttgtat gctaacttta actaaagcaa aaaatactct tgataagggt
    14821 gcaaaagaac gcatcaatac ttttttagca caaggtggaa tgaaatatca aggttcaacg
    14881 cctattacaa gtcttttgtg ggagctttat gaggatttgg ataatttaaa aagcaaggtg
    14941 aaaaagccgc tttcaaattt aaaagtagct ttattttatg gttgccatag tttaagacct
    15001 gaagatgctt tcggtaaaaa agaaagttca accaatccaa aaagttttga aagtgtagta
    15061 gaagttttag gggctaaaat agttcctttt gaaaaacgcc ttgattgttg tggttttcat
    15121 gcttcttatc ctgcagaaaa atctgtgaaa aaaatgtcta gtcaaattgt caataatgca
    15181 agtgaaaatc aagctgattg tgttgtaaca ccttgtccac tttgtcaaat gcagcttgat
    15241 atctatcaag aaagatttca agattatact agttctaaag caagattgcc gatgattcat
    15301 ttatcacaat tagtaggact tgcattagga ctttctaaag aaatggttgg tttagattat
    15361 aatattattg atgcaagtaa aattgcataa aaacatgggc aaaaagccca tgtttaaaga
    15421 tttaattcca ttcttaaaga atgctcccaa aaagccactt ccaagcgtgt tgcagtatga
    15481 aaaatttcgc tgagtttttg gaatttttgc gcactaacac ttgaagtata agaattaaca
    15541 aaatcttcaa attctttagc ttcattttga aaattttcac ttccataggt caaaatccat
    15601 tccttgtaag gatgatcttt taaattttca ttttttaaac gatttataat ttcagcacct
    15661 atttttgcat agcctatagc gcaagcacta agagcaacta acatatctaa aaaatctcca
    15721 ttttcaccta cgcttaacat ataacgcgaa taggctatat tgactaaact ttcatctttt
    15781 atattgagtt catctgcatt aatgccaaga gataaaattg cacgatgaag ctccatttct
    15841 ccttcaacta tataattttg aaatttcata gcaaaacgaa gttcttttgc ggtatttgag
    15901 ttaagtgcta atcttgcata acattttgcg taattaagca aataaatata atcttgcttg
    15961 agataaaaaa gaaaattttc ttgctttagg cttttatctt ccaatttttt aacaaaatca
    16021 tgatgtagat aagcattcca aattttttga ttttctttga ttaaattaga gaaaagcatc
    16081 atttttcctt tatgttttaa tattttattt tcaagtataa tgaaaaacta taaatatttt
    16141 aagcttttta tagtaaaata cgctttattt taattttttg aaggagagca aatggcaaca
    16201 tttgatgatg taaaagcagt agtagtagag caattaagta ttgatgcaga tgcagttaaa
    16261 atggaatcaa aaattattga agatttaggt gctgattctt tagatgttgt agagcttatt
    16321 atggctttag aagaaaaatt tgaagtagaa attccagata gtgatgctga aaaattaatt
    16381 aaaattgaag atgttgtaaa ttatattgac aatctaaaaa aataattttt ttcttgcaag
    16441 gagcttattc ttgaaaagag ttgtagttac aggtattggc atgatcaatg cccttggttt
    16501 agataaagaa agttcattta aagcaatttg caatggagaa agcggagtaa ataaaattac
    16561 tctttttgat gccacagact ttcctgttca aattgcagct gaagttaaaa attttgatcc
    16621 attagaggtt gttgatggca aagaagtaaa aaaaattgac cgtttcatac aacttggaat
    16681 taaagcagca agagaagcaa tgcaggatgc tggatttagc gaagaattag acaaagaaga
    16741 atttggcatt gtttcggctg ctggtatcgg aggtttgcct aacatagaaa aaaattccat
    16801 tatttgttcc gagcgaggtc cgcgtaaaat ttcccctttt ttcatacctt cagcacttgt
    16861 aaatatgtta ggaggtttga tttctataga gcatggactt aaagggccaa atatttcttg
    16921 tgttacagct tgtgcagcag gaactcatgc tataggagaa gcttataaaa gtatagcttt
    16981 gggaaatgct aaaaagatgt tagtcatagg tgcagaagct gcgatttgtc ctgtgggtat
    17041 aggtggtttt gcttcaatga aagctttatc aactagaaat gaagatccac agcatgcttc
    17101 aagaccattt gacaaagaaa gagatggttt tgtcatggga gaaggtgctg gagctttagt
    17161 ttttgaggaa tatgaagagg ctaaaaaacg cggtgctaca atttatgctg aattaattgg
    17221 atttggagaa agtgcagatg cacatcatat tacttcacca actttagatg ggcctttaag
    17281 agctatgaaa aaagctttaa atatggcagg gaatccaaag gtagattata tcaatgcaca
    17341 tggaacttca acccctgtaa atgacaaaaa tgaaacagca gcaattaaag agctttttgg
    17401 caataatatc ccgcttataa gttccaccaa aggacaaaca ggtcattgct tgggtgccgc
    17461 aggtgcaatt gaagcagtta ttagtgttat ggccttaaga gatggggtag ttccacctac
    17521 aatcaatcag ctcgtaaaag atgatgaatg tgatcttgat tatgttccaa atatatcaag
    17581 aaaagtagat ttaaaagtgg tgatgagtaa ttcttttggt tttggtggca caaatggctg
    17641 tgttgtattt aaaaaagtag attaatatgg cttcttattt agattttgaa aaaaatattc
    17701 agcaaattga tgaggatatt atcaatgctc agattaaagg agatactgaa gctgtatcga
    17761 ttttaaagaa aaatcttgaa aaagaaattt ctaaaactta taagaattta agtgattttc
    17821 aacgtttgca attagcgcgt catccagatc gcccttatgc tcttgactat attgaactta
    17881 ttttaaatga cgctcacgaa atacatggtg atcgtgcctt tagagatgat cctgctattg
    17941 tttgttttat gggttattta ggagagaaaa aaataattgt aattggtgag caaaaaggac
    18001 gtggaacaaa agataaaatc gctagaaatt ttgggatgcc acatcctgaa ggatatcgta
    18061 aagccttaag agtagcaaga cttgcagaga aatttcaaat tcctatttta tttttgatag
    18121 atactccagg tgcttatcct ggaataggtg ctgaagaaag agggcaaagt gaagctatcg
    18181 ctagaaattt atatgaatta agtgatttga aaataccgac cattgctata gttatcggag
    18241 aaggcggtag tggcggggcg ttagctatag gggttgcaga tagacttgca atgatgaaaa
    18301 attctgtttt ttcagtaatt tctcctgaag gttgtgctgc aatactttgg aatgatcctg
    18361 caaaaagtga agctgcaacc aaggctatga aggtaacggc tgatgattta aaatctcaag
    18421 gtttaattga tgatgttata gatgagccta caaatggtgc acatcgcaat aaagaagctg
    18481 cagcagtagc tattgctgat tatgtaaaaa aatctctaaa tgaacttgaa aatattgacg
    18541 tacgagaact ttctgcaaat cgtatgcaga aaattttaaa gcttggagcc tatcaagagg
    18601 cttaggcttt tacttcgctt ttttaaataa ttttattatt tataattgtt atcaaaatta
    18661 agttaattaa aagtattctt tttttatact tcaaaaatga ttttaaatat caaaataatt
    18721 atttttaaag gaattaattt gactcaaatt aaaaatatga aatttaaaaa aagtttactg
    18781 tgttttttaa ttttatctgg agctttgtta aaagcagaag aaaaatatca acttaatgat
    18841 gttgtggtta gtgctagtgg ttttgaacaa gatttggttg atgcgcctgc tagtatttct
    18901 atcattacaa aagaagagct tgaaaaaaag ccaattaagg atatagggga ggctatagga
    18961 gatattccag gtgtagatgt gactatgaat aaaacaggca cttatgattt tagcatacga
    19021 ggttttggta gttcttatac tctagtttta attgatggaa aacgtcaaag tgttgcaaat
    19081 ggattttatg ataatggctt tagtggcagt gagtcaggtt atcttccacc tttatctatg
    19141 atagagcgta ttgaggttat acgtggtcca gcttctacgc tttatggcag tgatgctgta
    19201 ggcggtgtga taaatattat cactaagaaa aatcctgata agactgaggc gaatatagaa
    19261 tttaacactc ttttgcaaca gcactctaat cactatggca atgctggggg atttaatgct
    19321 tatgtagcaa ctcctttgat tgaagataca ttatcaattt ctgcaaggtt gaagtattat
    19381 gataaggcag cttctgattt aaaatggcct acaccggttt ggaataatag tcaacaaaga
    19441 cctgataatt atcaaattgc tagccatagt ccaggtgctt ttactagttt aggttttggt
    19501 tctaggctta attggacagt agatgataaa aataatatat attttgatat agaacgatat
    19561 attaatgaaa tttcagtgaa ttctacaagt agtagggcta ttaaaagtga aagacaactt
    19621 tttaaggata atattgtttt aaatcatgat ggtaactatg attttggttc aactaactca
    19681 tatttacaat atggtagcac taaggataag gagctgcata gccaaatttg ggtaggagaa
    19741 ggtaaggttg ttttaccttg gaatttaggt caatacggta atttagtaaa tacctttggt
    19801 gcaaggattg attatgagat gttaaaaaat gatcaagcaa gcgcaggtag tcaaataaga
    19861 ggtaaaaatc ttgatcaaac cacggttgcg ctttatgggg aaaatgagta ttttataaca
    19921 gatgatttga tttttactac aggtttgcgt tatatttata gcgatttgtt tgattctgaa
    19981 tttacgccta gggtttattt ggtttatcac ttaaatgata atatagcctt taaaggaggt
    20041 gtttcaaaag gctataaaac tcctgctgct aaggagttga caaatggata ttataattat
    20101 agcaatgaca atgcttattt tggaaaccct gacttaaaac cagaagaaag tataaattat
    20161 gaattgggtg ttgattttag gatatttgat tttgcacatt attctatcac aggatttatt
    20221 actgatttta caaatcaaat cagtagtgaa gatttaacag gtatgcaaaa tggtattaat
    20281 tgtagcaatg gcactgtttg tacgcgtcct attaatcttg gaaaaacaca gactaaaggt
    20341 atagaatttg catttaatac caaaacttac aatggcttta gcctaaattc aagttatact
    20401 tttatggata atcgctacaa agatggtcaa aaaaattggt ttggtggtga tagaatagag
    20461 aatttaccaa ggcatatagc aatgttaaaa ttaaactatg agcgaggtaa atttagctcc
    20521 tatataaaaa cacgagcaag acttgatact atagccaaag caaaaggtgg cggtaatggt
    20581 agtttgccat ggcaaaaata taagcctttt tatatagtag atttagggat aaattataaa
    20641 atcaataagc aatctagctt aagttttgta gtacaaaatc tttttgataa aaatttcttt
    20701 gatccgcaag ttactaaatg ggctggagcc aatcctgctg gatatgcaaa tcgttatcaa
    20761 gactatacag aaggaaggag tttttggttg agttataaat atgattttta attttttaag
    20821 gctttaatta cctttatatt ttcaaaaaag caaaaataaa gtacaatgtg aaaaataaat
    20881 aaaaggtttt attatggcgt ttaaaaattt aaaagaactt tcttttgaaa aatcaaatta
    20941 tattaagcct aagagatttg cttatgaaag taatggtaag ttttgtactt gggattttat
    21001 agaatctaaa gatagtgttt cagtgctttt gtatcataaa gaattagaaa gttttatttt
    21061 tgtacgccaa tttcgtatac cactttggta tcatcaaatg catgataaag attatgtaaa
    21121 agatgataat atgggctata ctatagagct ttgttctggg cttgtggata aaaaattatc
    21181 tttagaggaa atagcaaaag aagaatgtat agaagaacta ggatatgctc ctaaaaattt
    21241 agaaaaaata ggagattttt atacagggtt tggttcaggt gtaagcaagc aaagctttta
    21301 tttcgcagaa gttgatgaaa aagataaaat ttcttcagga ggtggagttg atgatgaaga
    21361 gattgaagct gtttatgtta aggtgcagga ttttgaaaaa aaatgtaaaa atataataag
    21421 aacgcctttg cttgattttg cttatatgtg gtttttaaag gagaagtggg aaaaatatta
    21481 aagattattt aggttaaacc ttaaaaaggt tcaacctagg atttaatgat ctgattcatc
    21541 aagcatttct ttaaatacat tgaaaagatc aagcgatgca ttttcagcaa cttcgcattt
    21601 attaattatg ctgtgttgag taatatcttt gctaatatct tctgtatttg ctattgttat
    21661 agcattattc atattttcat gaactttttc atgtggctcg ttaattttta agaagctttt
    21721 attttgccca aatctttctt ttcctgtgct agcaagccat tttcctaagc gacaagatgt
    21781 atgatcggct aattgctttc ctgatttgga aaaaatttct ttataaccat ttaatttaaa
    21841 agctatatga tctagttttg ctaaagatac gaaagcttct gaagcgatac caactgcatt
    21901 tgaattagta gaatgcgctt catttactaa gtgggtaaat ttttcggaaa aactcataat
    21961 atgagcatta gaatctatag aaattttttc aacttgctca ctttgagtat acatttcatt
    22021 tgcattttgc tttagaaggt tgatattcat ttcaacttct gtggttgctt tttgtgtttt
    22081 ttcagctagt tttcttactt catcggcaac aacagcaaaa ccacgcccat gttcacctgc
    22141 gcgtgcagct tctatggcag cgttaagagc taaaagattg gtttgatcgg aaacatcttt
    22201 aattagatta attacattag taatttcatc tacacttcta tgcaatgttc ctgcaacatc
    22261 tcttgtttta ttggctgatt ctgtaatatc ccctaaggaa gcattgatag aattagcaat
    22321 atggttaagt tcatccattt cagcaagaga agttttagaa tagctagaga taacttctgc
    22381 cttatttaca ttttctaaca tatcgccttg aacaatagta atatttttta aaaccccagt
    22441 taataaaaca tttaaaagat ctgttttaag tttagactct aaagccgctt gttctaatga
    22501 tgtaatttta ttttttaatt ctaaattttc cgattgaaat ttttcaattt tatgtgcaag
    22561 atttttattt tcttcttcaa gtttttgaag atcagaatgg tttattttac ttccaaacat
    22621 tgttttgcct tattttttat aatttgctag atattggcta agttcatctt ttacatgaag
    22681 cttttctttt tttaaagttg aaatttccat gctgctaaga gaagttctac cttcttctgc
    22741 atctttaatc atgtcatcaa gttcattatg acgatcaaat agtttatcaa aatgagcatc
    22801 tttacctttt agctctgaca ttaattctct atattcatgt agcataaact ctccttgtat
    22861 tagtgaaatt taaaattcat ttaacaaggt attttacact attaaaagat atttttggct
    22921 taaaaaataa taaaattaat aataattttt aaatgtgtgt tatataagtg atttattaaa
    22981 gtttattttt aaattggaaa ttttaaaatt gaggaataaa tcctcaaaat tatttagaat
    23041 tttgtttttt tagagttctt agagtagaag ctgcgattct catttttctc gtggtgccat
    23101 cttctaaagt tacacgaact gttctgagat taggtaaaaa gcgtcttttt gttttattgt
    23161 tagcatggct gacattatta cccaccattg gacccttgcc tgtgatttga catactcttg
    23221 ccattttctt gtccttatga aaatttttaa atggagattt tatcaaaatt aagcttaaaa
    23281 tattccataa tttatagttt ttttaatata taagtcgata aaatattatt tatcacattt
    23341 atatatactt taaggttttg atcatgtatg tagctccaag tttattgtct gcaaattttt
    23401 tgaaattaga agaagaagtt aaagctattg aagctgcagg tgcagatctt ttacatattg
    23461 atgtaatgga tggacacttt gttccaaatt tgacttttgg accttgcgtg atcgaaaaaa
    23521 tttcaactat tagtaagttg ccattagatg tgcatttgat ggttaaagat gtaagtaaat
    23581 ttatagatct ttttatccct ttgaaaccaa aattcatttc ttttcatatg gaaagcgaag
    23641 ttcatcctat aagactttgt gaatatataa gaagtcaagg aatccatcct gctattgttt
    23701 taaatccgca cactcctatt gattctatta aacacatgct agaatttgta gatatggtac
    23761 ttttaatgag tgttaatcct ggatttggtg gacaaaaatt tttacctttg gtacatgaaa
    23821 aaatcaaaga attgcgccaa atgattgata aaaaaaatgc taaagttttt atagaggttg
    23881 atggtggtgt taatggttta aatgctagcg atttagagga atccggagct gatattttgg
    23941 tggctggaag ttatattttt tcttctaatg attataaaac tgcaatttca tctttaaagc
    24001 ttgaattttg agttcacagc aaattgatca gattatttct atattaaata agcaaagcaa
    24061 gccttatgat tgggtgatgc aagagtttgc caaagttgaa gaattaaaaa attttgattt
    24121 agatttggaa acttttgagc ttttgggttt gggcttaact ttgaataaag ataatatttt
    24181 tacccttaaa acacgcacaa caaaaattaa agatgaaatt ttttgtatag tagatataga
    24241 aagtactggc ggcgtaagta agggggaaat tttagaaatt ggagcagtaa aaattcaaaa
    24301 ttctaaagaa attggacgct ttcaaagttt tgttaaagta aaagaaattc cagaaaatat
    24361 aaccgaactt acgggtatta cttatgagat ggtggaaaat gctccaagtt tagcaaaggt
    24421 tttaagtgat tttaggcttt ttttaaaaga cagtattttt gtagcgcata atgtgcgttt
    24481 tgattatagt tttatttcta aggctttaaa tgagtgtggt tttggcattt tgcttaatcg
    24541 tcgtatttgc actatagaat ttgcacaatg ttgtatagaa agtccaaaat ataaactaga
    24601 ggttttgaaa gaatttctgg gcgtggaaaa tacgcatcat agggctttag atgatgcttt
    24661 ggcagctgct gaaattttta aatattgcct tggaaaactt ccttatcata taaaaactac
    24721 agaagaactt ataaatttta caaaaactgc acgcataaag caaaaataaa tatttaaagt
    24781 gtataattaa aacataaatg acgggagctt gtgtaacagg ctgagagtaa gctaaaagct
    24841 tagaccgaac cggatctgga taatgccagc gtcgggaaga tttataaatt tcaatacttt
    24901 aaaaatttat actcaccctt catttatcca aattttttaa aggataaatt tatgaaaact
    24961 caaatgaatt atgccaaaga aggtgttttt actaaagaaa tgcagattgt tgcacaaaaa
    25021 gaaaatttaa gtaaagattt tttgcttgaa aatattgctt gcggtaaaat tattatccct
    25081 gcaaatatta atcataaaag tcttgatcca aatggtatag gttttggact gcgtactaag
    25141 gttaatgtaa atttaggagt ttcaaatgat tgcgttgatt atagcgagga aatgaaaaaa
    25201 gtagagctcg ctcataaatt tgacatagaa gcgattatgg acttaagcaa ttatggcaaa
    25261 acaagtcgtt ttagagacga gcttgttaat gtttcaaaag ctatgatagg aacagttcct
    25321 gtatatgatg cggtaggatt tttagaaaaa gatttaaaac aaattggtgc taaagacttt
    25381 ttagatgttg tatatcatca tgctaaaagt ggggttgatt ttatgacaat tcatgcaggt
    25441 attaattctc gcgcagcgca tatttttaaa caaagtaaaa gacttacaaa tatagtttca
    25501 agaggaggct ctgtgcttta tgcttggatg atgatgaaag atgctgaaaa tccttttttt
    25561 gagtattatg atgatttgct tgacatttgt ttaaaatacg atgtaacttt atctttgggc
    25621 gatgctttgc gtcctggctc tactcacgat gcaagtgatg gggcgcaaat ttcagagctt
    25681 atagaattat cgcttcttac ccaaagggct tgggatgttg gggttcaagt aatgatagaa
    25741 ggtccagggc atatggctat taatgaaata gaggtaaata tgcaattaga aaagcgttta
    25801 tgcaaaggag cgccttttta tgtcttagga cctttggtaa cagatattgg tgcagggtat
    25861 gatcatatta gtggtgctat tggaggagct gtggctgcag ctagcggtgc tgatatgctg
    25921 tgttatgtaa cacctgctga acacttaaga cttccaaatt tagaagatgt tagagagggt
    25981 atagttgcga ctaaaattgc agctcatgcg ggagatatag ctaaacttcc aaaagaaaga
    26041 gcaagagatg atgagatgag taaggctaga caagagatag attgggagaa aatgtttaaa
    26101 cttgctattg atggagaaaa ggctaaaaaa atgtttaatg agcgtcgccc tgatgattta
    26161 aactcatgtt ccatgtgtgg aaaaatgtgt gcaatgaata ctatgaatca aattttaaaa
    26221 ggcgaagatg tgagtttagc ttgaataaac tttgagagta agatctatag agataccttg
    26281 ctctcctgct ttaagattaa gtggataatc aagcttgatt aaattattat agttttttag
    26341 agcatcaata aaatcataaa gtcttctagg attgttcatt gtcgctttaa tggctaagcg
    26401 gttttttaga tatttttctt gttttttggg cttagtttct tgaattttta cattttgaaa
    26461 atatttttgt aaaaaaatat caaaatttcc tatattaaaa ttttgctcaa attgctctaa
    26521 acttttgttg ttttcgcttc ttagagttga tattttatct tcactaaagt caaattttga
    26581 tttagcggct tttaagatag caagttgtga gttttctcta agatttgctt gtttgtagtt
    26641 ttttaatgtc ggtaaaagta aaaataagat caaggctgtg caaacgctta taaaacttaa
    26701 cgcgcaaatg ataagcttta ataaatcaat ttcttctaga cttttatctt tcatctgcaa
    26761 ctcctggaat ttgtttacta atactaacaa aacgatacca cccattatct aagcgataat
    26821 aggttgtata gctttgatca aagatgcttt ttaaaggggt ttctaaaagt agagtaaaca
    26881 tttctcttgt aggagtgact ccgataagtt ttaaggaata ttcgtcttgt tcaacacttt
    26941 caagagtaat attatcagtt tttacaataa tatcaaatag atttcttaag ctttctttaa
    27001 caatttgatt ttgagtgtta aaatttttcg ctatttggct ttgatcaaat aaaatttcat
    27061 aaagcatttc attttgctta gtttgatttt gaagcactat aacttgttgt ttttcatcat
    27121 cgatagagct attgattaat gcaattttta ttgtatatgt aaaatatact agcaagataa
    27181 ataatatact aaaaccaaaa agtcctagcc aaattttatc aaagagtgtg aaaataggtt
    27241 tttttcttgg ctgtatgaag ctataagtca tttaagctcc ttttgcatca attctatcat
    27301 aagatctaag gtgttgattt gtttcgtttt tatctctaaa aaagtttcac tttctaaaaa
    27361 atc
//
LOCUS       DAEDTT010000006        26396 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.006, whole genome shotgun sequence.
ACCESSION   DAEDTT010000006 DAEDTT010000000
VERSION     DAEDTT010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26396
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.006"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..210
                     /locus_tag="KLC54_000208"
     CDS             <1..210
                     /locus_tag="KLC54_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HBD9176622.1"
                     /translation="SSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLYIFSLICCILIVG
                     FIFYHSKKTKEFDLDEGKKAKKQTK"
     gene            263..339
                     /locus_tag="KLC54_000209"
     tRNA            263..339
                     /locus_tag="KLC54_000209"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:297..299,aa:Arg,seq:gcg)
     gene            complement(342..791)
                     /locus_tag="KLC54_000210"
     CDS             complement(342..791)
                     /locus_tag="KLC54_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176623.1"
                     /translation="MVIFCAALALLLFLGMIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEATKKKLEFVSA
                     LAANINASAQTVSYLNKELKKISGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(807..4052)
                     /gene="ccsA"
                     /locus_tag="KLC54_000211"
     CDS             complement(807..4052)
                     /gene="ccsA"
                     /locus_tag="KLC54_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HBD9176624.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSNPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNENKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELAGQKFFISWALSY
                     EQLPFDIYLRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQ
                     SSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLK
                     HASVIIFILLLSFGSEKTFAQDLNLTLPVVNTNHAKALATLIVQKSADGRMVPFDTLS
                     REILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQMEPFILMPQNQAVRDAIANILEIPS
                     TKYISYKDFFDENNRYKLQKYVENANRKNPNARGVFDKEIIKLDERANVVNLVFSGEL
                     FKFIPVQNNPNNVWLAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWTRADEG
                     LKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMVV
                     PNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGI
                     FFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGF
                     LGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGA
                     IWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIM
                     TYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMVVLALFARRKRNFVGKL"
     gene            complement(4070..4765)
                     /locus_tag="KLC54_000212"
     CDS             complement(4070..4765)
                     /locus_tag="KLC54_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9176625.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(4752..5522)
                     /locus_tag="KLC54_000213"
     CDS             complement(4752..5522)
                     /locus_tag="KLC54_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9176626.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAELIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(5519..6571)
                     /locus_tag="KLC54_000214"
     CDS             complement(5519..6571)
                     /locus_tag="KLC54_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HBD9176627.1"
                     /translation="MMVRIKVSHLIFLIASIVFIFVSPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLDIQSTPGLRMVVFSIVLILVMLFARKGIMGYYEL
                     SDVIRGIKKRFKRSEK"
     gene            complement(6571..7467)
                     /locus_tag="KLC54_000215"
     CDS             complement(6571..7467)
                     /locus_tag="KLC54_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HBD9176628.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(7486..8595)
                     /locus_tag="KLC54_000216"
     CDS             complement(7486..8595)
                     /locus_tag="KLC54_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HBD9176629.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSTLSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(8617..9732)
                     /locus_tag="KLC54_000217"
     CDS             complement(8617..9732)
                     /locus_tag="KLC54_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HBD9176630.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDNFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNNPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVDNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(9763..10197)
                     /locus_tag="KLC54_000218"
     CDS             complement(9763..10197)
                     /locus_tag="KLC54_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HBD9176631.1"
                     /translation="MIIRWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(10206..10397)
                     /locus_tag="KLC54_000219"
     CDS             complement(10206..10397)
                     /locus_tag="KLC54_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HBD9176632.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(10449..10955)
                     /locus_tag="KLC54_000220"
     CDS             complement(10449..10955)
                     /locus_tag="KLC54_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HBD9176633.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(10964..11995)
                     /locus_tag="KLC54_000221"
     CDS             complement(10964..11995)
                     /locus_tag="KLC54_000221"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HBD9176634.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAVVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILEKAPSVV
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(11995..13296)
                     /gene="flgR"
                     /locus_tag="KLC54_000222"
     CDS             complement(11995..13296)
                     /gene="flgR"
                     /locus_tag="KLC54_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HBD9176635.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDEN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFVAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDR"
     gene            complement(13353..13802)
                     /gene="flgQ"
                     /locus_tag="KLC54_000223"
     CDS             complement(13353..13802)
                     /gene="flgQ"
                     /locus_tag="KLC54_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HBD9176636.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDIKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GAKISVKDIVNTDLLRAQSETYIKILPLRFTVEFGEQNAIIYYLKKK"
     gene            complement(13778..14293)
                     /gene="flgP"
                     /locus_tag="KLC54_000224"
     CDS             complement(13778..14293)
                     /gene="flgP"
                     /locus_tag="KLC54_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HBD9176637.1"
                     /translation="MKKIYFMLAIAGIFAGCVPSANSATKNSSANSTPPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDENFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            complement(14357..16948)
                     /gene="gyrA"
                     /locus_tag="KLC54_000225"
     CDS             complement(14357..16948)
                     /gene="gyrA"
                     /locus_tag="KLC54_000225"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HBD9176638.1"
                     /translation="MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKERQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFASGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDLQ"
     gene            complement(16989..17564)
                     /locus_tag="KLC54_000226"
     CDS             complement(16989..17564)
                     /locus_tag="KLC54_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HBD9176639.1"
                     /translation="MRCINCGAFALLCFCELCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNSVKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            complement(17561..18205)
                     /locus_tag="KLC54_000227"
     CDS             complement(17561..18205)
                     /locus_tag="KLC54_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176640.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            complement(18282..20078)
                     /gene="lepA"
                     /locus_tag="KLC54_000228"
     CDS             complement(18282..20078)
                     /gene="lepA"
                     /locus_tag="KLC54_000228"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HBD9176641.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSI
                     AKNDEVLVMSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSL
                     ALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGELIKIQNPSEL
                     PPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPL
                     NEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQ
                     SKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
     gene            20205..21479
                     /gene="cmeD"
                     /locus_tag="KLC54_000229"
     CDS             20205..21479
                     /gene="cmeD"
                     /locus_tag="KLC54_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HBD9176642.1"
                     /translation="MFEKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLNSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESREKLSLLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEVKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
     gene            21476..22216
                     /gene="cmeE"
                     /locus_tag="KLC54_000230"
     CDS             21476..22216
                     /gene="cmeE"
                     /locus_tag="KLC54_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HBD9176643.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLTLDQESEKIALQNAQNSYQLALVEYENTKSKMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNKAKINIAYYKNIMTKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVKLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            22219..25236
                     /gene="cmeF"
                     /locus_tag="KLC54_000231"
     CDS             22219..25236
                     /gene="cmeF"
                     /locus_tag="KLC54_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HBD9176644.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKVNGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKD
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(25261..26067)
                     /locus_tag="KLC54_000232"
     CDS             complement(25261..26067)
                     /locus_tag="KLC54_000232"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HBD9176645.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFITYIRNYFQDHYIEYNEMTNILILEYKNENTLELFEAFADE
                     SEHLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSE
                     IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(26068..>26396)
                     /locus_tag="KLC54_000233"
     CDS             complement(26068..>26396)
                     /locus_tag="KLC54_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HBD9176646.1"
                     /translation="YVDGFMNFGYELAFYIEDKLVCVDLIDILEDGISSIYCFYDPDF
                     SYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADYTPNEILKGTKELFEN
                     EVLWEK"
BASE COUNT         9247 a         4761 c         3340 g         9048 t
ORIGIN      
        1 tcttctattt tcttgccttt aaatttgatc gtaggatttt ttggaatgaa tactaataat
       61 ctttttttca aagatagccc ttatggcaca ctttatattt tttctttgat ttgctgtatt
      121 ttgattgtag gttttatatt ttatcattca aaaaagacta aagaatttga tttagatgaa
      181 ggtaaaaaag ctaaaaaaca aacaaaataa gcaaaatttt gcttatttta agaatattta
      241 tatataattt taacttattt ttgcgctcat agctcagctg gatagagcat ttgattgcgg
      301 ttcaaaaggc cagaggttcg aatcctcttg agcgcaccat attatttatc ttctttaatt
      361 tttcttttag ccaatcccat atgctcataa gcatcaattt cttttttgta agatccagaa
      421 attttcttaa gttctttatt taagtaactt actgtttgtg cacttgcatt aatatttgca
      481 gccaaagcag aaacaaattc tagtttcttt tttgttgctt catctaattc tttagaagtt
      541 tttgaaccaa gtttatgtgt ctgcacataa agtttagcaa gttcttttaa ttcaatatct
      601 gttagtttaa catcggaagc agcaattatc attttatcta agtctgtatc aaatttttta
      661 gtcttttcag ctacatgctg cttttggcta gttttttgct ttttaattgt ttttttgcca
      721 tcacttgtaa taagataagc aatcatgcct aaaaacaata aaagcgctaa agcagcacaa
      781 aaaataacca aaaaaatatg gctcatttac agtttgccta caaaatttcg cttccttctt
      841 gcaaaaagag ctaaaaccac catcaatgca aatccccaat aaacataatt aggaatttga
      901 gccgcttcgc ctgcagcgta agaatgaagt cctgttaaaa agtaatttac tccaaaataa
      961 gtcataataa taacccaata agcaaacata ctccataaag caaacacaaa ttgattacaa
     1021 tattttggaa tcattctaag atgcaaaatt gctgcataaa ccaaaatgct aactaaagcc
     1081 caagtttcct tagaatccca actccaatat ctcccccaac tttcatttgc ccaaattgca
     1141 cctaaaaaat ttcctacagt aagcaaacaa agtccaaaaa tcattgccat ttcattaatt
     1201 cttgtagcct ctgtaatatt tctcaaaata ttaagattat attttccatc tttcttaaga
     1261 aaacacatta agaacagtgt aaagatacca agtaaggcac aaagtcctaa aaatccataa
     1321 ctagcagtaa taacagatac atgaatacta agccaataag aattgagcac aggaacaaga
     1381 tttgtaattt gcggattcat ttcgcttaaa tgtgcaacca ttaatacaac accggataaa
     1441 atagaagtta atgacaaggc tataggactt tttctagaga aaaatatacc cgacaaagac
     1501 aatgcccaag ctatatacac catactttca tagccattac tccatggagc atgacctgat
     1561 aaataagcac gaagtccaag acctactgta tgaattacaa aagctaaaac atttaaaaca
     1621 tataccactt taaatataaa agagattttt aaattcggta cgaccatttt agaaaaaaca
     1681 agaatcaaaa gtaaaaaacc cgcaattaaa tatacaggag cgagtttaac gaaaatttca
     1741 gccttattag aaaaaatttc catttcaacc ttggttttac taggcatgac tttatatcct
     1801 attttttctt gatattcttt gataaatttc aagccttcat cagctctagt ccaattacca
     1861 tctttaaaag cattttccac ggcactaaaa taattctgta ttaaagccaa aacaatatgc
     1921 ccttcatccc ccttaagagt agttacagca gaaaaaggtg caagccaaac attatttgga
     1981 ttattttgaa caggaataaa tttaaataat tcaccactaa aaactaaatt tacaacatta
     2041 gctctttcat ctagttttat aatttcctta tcaaaaactc ctcttgcatt tgggttttta
     2101 cgatttgcat tttcaacata tttttgaagt ttatatcggt tattctcatc aaagaaatct
     2161 ttataagaaa tatatttagt gctaggaatt tctaaaatat ttgcaatagc atcacgaact
     2221 gcttgatttt gtggcattaa aataaaaggt tccatttgcc atttatctac atcaacgagc
     2281 atggaaagca taacagcgtt agaattttga cccttatagc tatcactttg atgaattttt
     2341 tctaaaattt ctcttgatag cgtatcaaaa ggcaccattc ttccatctgc tgatttttga
     2401 actattaaag tagcaagagc tttagcatga ttagtattta ccacaggtaa ggtcaaattt
     2461 aaatcttgag caaaagtctt ttcagaacca aaagatagca ataaaataaa aataatcaca
     2521 cttgcatgtt ttaaagtgtc tttattaatt aatcttgcca aagttctaaa tctagaatgt
     2581 ggatttaaaa aattcataaa cattccaaga caaagcaaaa aataacctat ataagttggt
     2641 attttacctg gatctttatt tacagataaa acagtccctt tttcatcttg atcataagaa
     2701 ctttgataaa atctatagcc atcataatct aaaacattat tcataaaaat tctataatca
     2761 aaattttcat tattattttt tacggtaatt tcacttgcat aagaagctgg agacatagaa
     2821 cctggataac gatctaatac aaaatctctc aaataaatat caaaaggcaa ttgttcataa
     2881 gaaagcgccc aagaaataaa gaatttttga cccgcaagtt ctatcataat aggtttatta
     2941 tattcaaaaa tataaaattc tttactttca tttttatagc ttaattctaa ttttaaagca
     3001 ttagagccag ttaattctaa gtttttattc tcattgctta aggcaaaatc tttaaaatgc
     3061 aataataaag aatttttcca attttgaggc tcgccaaaag tagaaatcaa catagttcta
     3121 cccacttcta accaagcaga tttaaaccat aaccaaaaac tttcatcttg aggtctattg
     3181 gaaccttcta aagcttcttg cgcatgcaaa gaagcagctt taactacaaa actaatatca
     3241 ttaatttcat aaagccttct ttccttagca tttgcctttt ctccaatttt aaggtctaaa
     3301 ttttgtccat ctagcatact tagaaaatgt aagttttcac ttgaacttaa agttaaattt
     3361 tcgtcaattt ttacaaaagg tgctttaaca ttatcattca taaaagcaaa gttaacccct
     3421 tctatattct taacttcacc tttttcaaat ttaacatcaa caccttgaga tcctttttga
     3481 gaaagcatta aaaccaataa aggattagaa ttattatttt ctttataagt ataatgagca
     3541 tttaagatta aatctttata ttttaataca gcttgatcat cacctaaatt aagttttagt
     3601 ttaaaagaat tagcaaaagg caaatttcct atataacgat cattaaccgc actatagcgt
     3661 tctccatctt ttatagcaga aatgcgcaaa gaagtcttag aactttctat aagtgaattt
     3721 tgagtatgct ctctgatagg taaaatacct tcaaaaccag catatcttgt cattgcagaa
     3781 cccactaaaa taaataaaaa agaaatatga aaaatcatta aaggcaattt tttaagccca
     3841 aacattttat aacgaaacat cccgcatagt aaattaatac caagtaaaag ttgtatatat
     3901 tcaaaccaaa aagtatcata aaccattgcc caagccgtag gagttccata agcactttca
     3961 ataaaagttg ccaaagcaca aaaaagcgca aaaagcaaaa acaatacaac cgaaactctt
     4021 aaatccccta tgctttttat tatatttttc attctttttc ctttaaattt taaagcccta
     4081 aatatttctt tctaatctca tcatcaccta ttaaattttt agcctcgttt tccattacaa
     4141 tgcgaccatt ttccaaaaca taagcataat cacttatttt taatgcagaa taagcatttt
     4201 gctctaccaa aagaatagtt ataccctctt cttttaaacg cacaataata tcaaaaactt
     4261 cacccacaat ctttggagca agccccaaag aaggctcatc caacatcaaa agttttggct
     4321 cactcattaa agcccttgaa atcgcaagca tttgcgcttc ccctccactc aatgttccag
     4381 ctaaagcatg ctttttactt gcaagtcttg gaaaaagttt atacatttgc tctcttaaat
     4441 gctcataatt ttcagcatta ttaaaagcac ctatttttaa attttcctct acgcttaaat
     4501 taataaaaac acgtcttcct tcaggaacta aagctatacc tttttgaact aaagtatgag
     4561 ttaaatgtct tttagtatca taacctaaga aattaacctc accagttctt ttaactgagt
     4621 ttaaaagcgc atttaaagtt gaagttttac ctgctccatt tgaacctata agagaaacaa
     4681 tatgacctgt ttccacttta aaatcaatcc ctttaacagc ttcaattaat ccataataaa
     4741 catgcaaatc tttaactatt agcatcaaaa tcccctaaat acgcagcaat tacttcttta
     4801 tgatttacag catcgcaaag tttaccttca aaaattgttt ttccataatc aagtaccaat
     4861 acgcgatcac acaatttatt tacaaatttc atatcatgtt ctataagcaa aacgctaatt
     4921 ttataatctt ttcgtaattt aaaaatgagc tcagcaagtt catcgctctc agagctattc
     4981 atcccagcgg ctggctcatc aagcaataat aatcttggct gagtagccat tgctcttgca
     5041 atctcaactt ttctttgttg tccataactt aagctagtag ccttttcata ggcaaattct
     5101 gcaataccaa gttcttctaa tattgcataa gccttctctt taaatacttg ttctattttt
     5161 ccaaaacgcc ctaaatgcaa aaaggcttca aaaatattat atttcatttg tttattaaaa
     5221 ccaataagaa cattttcaag cacattcatg cttgaaaaaa gcctaatatt ttgaaatgtt
     5281 ctagctattc ctaaatgcac aatcttatga ggttttaagt ggtcaattct ttctcctaga
     5341 aattcaaccg aacctgaact aggtttatag ttacctgtta taatattaaa aagagttgtt
     5401 ttgccagccc cattaggtcc aattaaagca aaaatttcac cctcattgat tttaaaagaa
     5461 gtttcattaa tagctttaac actaccaaaa ctttttgaaa tttgttttaa ttccaaaatc
     5521 atttttcact ccttttaaaa cgctttttaa tccctctaat cacatcactc aactcataat
     5581 aacccattat gccttttctt gcaaaaagca ttactaaaat cagaacaata gaaaaaacaa
     5641 ccattctaag ccctggcgtt gattggatat caagatttaa agaatctatt tttatattta
     5701 actcatctaa aaatctaagc cactcacttc caccaataac taatatcgca cctataatag
     5761 cacctgtagt agaaccaagt ccgcctaaaa caataataat caaaagctga aaagtaagta
     5821 aaaaatcaaa ttgagttgga gatacggtag tcaacagaca agccaaaagt cccccaccta
     5881 caccttctaa aaatgctgaa gtgctaaaag ctaaagtttt tatccaaaaa gtatttattc
     5941 ccatagcact tgcagcatct tcatcatctc ttatagcctt cattgcacga ccatatttag
     6001 aataaactat atttaaaatt aaaataaccg ctacaatagc aataccacct gtccaataaa
     6061 tcgtggaaaa ttgtggaata tctaccagtc ctcttgagcc attagtaata gaaggaaaat
     6121 taatagcagc tattttaata attattccaa agcctaaagt tacaatagcc aaataatccc
     6181 ctctcacgcg aaatacagca aaagccaaaa tcagggcaag taaagatgaa caaattccag
     6241 ctacaattaa agctagaata aaggaatttg aatggatggc taaaataaaa gaactaggac
     6301 catctaaaaa aaactgatca tttttcgcat cagcacttaa aagaactaaa gcagccgcat
     6361 aagctccaat tgcaacaaat ccattgggtt ctagtgaaaa ttgtccagtt acaccattaa
     6421 taaggttgta actcacagcc aaaataataa aaatagcaat ttgattaaca atgtttaatc
     6481 catagtcccc aaaaatataa ggagaaacga aaataaaaac aattgaagca attaaaaaga
     6541 ttaaatgtga aaccttaatt ctaaccatca tcaaaaccta ctcttttcaa aatttatacc
     6601 taaaattccc gtaggtctaa ataacaatat aaacaccaaa aaaataaaag caaatgcatc
     6661 tttaaagcct gataaatctg gaaaaaaagc cacaacaaca acttcagtaa atcctataat
     6721 aagtccaccc aaaactgcac ctactacaga acctatacct cctaaaactg cagcagcaaa
     6781 agctttcaaa cctattaaag ttcccatagt aggttcaaca gagtaataat ttgcagccca
     6841 aaaaacaccc ccaactgctg ccaaagctga acctagggca aaaactatag caataatacg
     6901 atttgcatct atacccatta aatttactgt ttgtatatca aatgccaaag cacgaatagc
     6961 tataccatac ttgcttttat acaaaatcca taacactgct attaaaataa caaatgtaag
     7021 agcaggaacc attaaagaac cataagttgt tatcactccg ccaaaattaa cactttcctc
     7081 aaaataactt ggcggtgtaa aagttctagg tgttgaagta aaaagcatat taaaaagatt
     7141 ttgcaagaaa aaactaatac caattgctgt aatcaacaat gaaattctag gagcctgtct
     7201 taaaggttta taagcgattc tatctgtagc tattccaaca caggcagcaa aaatcattgc
     7261 caaagacaaa gctcctagaa aaggaacatt tagattagtc atgcaaaaaa gagctgcata
     7321 agcaccaacc atcataatat cgccgtgagc aaaattaata agtcttaaca cgccataaac
     7381 catagtatag ccaacagcaa taagggcata catactgccc aaactaagtc cattaacaag
     7441 ttgttgtaaa aataaagtag aatccataat ctttctattt ttcctttaag gattgataat
     7501 atctttataa ttttgctttt gatttttaat ttctttaacc actacagaac gagttgcatt
     7561 tcctgtttga tcaatactga taacaccaga aacaccttga taatttttag tttggtgaat
     7621 tttttcattg acacacttac tagtaagatt ttcaacgcaa gcattcatag catttaacat
     7681 tacaaaatac gcatcagccc ccatagctga aaaatttgga acttcttttg ttcctttagc
     7741 tttttcataa acactgataa attctttgct taattttgta gttggattat tagcatcaaa
     7801 actatctgtg aaaatataac cctcgcttgc atctccagct aaactaataa aagtttgatc
     7861 agcaactcca tctgcagaac ccataggaat atttaaacct gcgagttttg attgtcttgc
     7921 aaataaagaa gcttcactat aataaagcgg taaaaaaata aattctggat ttaaactttt
     7981 aacttgagct acaatagctc taaaatcttt atcacctgaa ttaactctta aaattctaag
     8041 aatttgaccg ccattagact tgtactgttt ttcaaaagct tttgctaaac ctaaggaata
     8101 gtcagtgctt tgatctacta caataacagc acttttgtaa ttaagttttg aaaaaacata
     8161 ttttgctaaa gatgaacctt gaaaactgtc cataaaacat actcgagaag aatatatttt
     8221 tttatcaagc aatctatcac cagttgcagc aggagcgatc aatggaattt tattatcttc
     8281 tgctacgcgc ataacttgca atgtattagc agtaaccatt tcccctataa gacctataac
     8341 tttatcttga gaaactaaac gatttgctcc actcgaagat tctaatttat cacctttagt
     8401 atcaataata gcaagagaaa ccttatctcc attacttaaa gttgattgca ttgaatttgc
     8461 aagtttaatc ccttctagtg cactttgtcc atatgctgca gtagctccgc taagtggtaa
     8521 aacaactcct attttgactt ccgcagcact taaacttaaa cttagaatac ttgctaaaat
     8581 taaacttttt ttcattctct acctttattt tagtaattat ggatttataa ttgttttata
     8641 attttgtttt tgattttgaa tttctttaat cacaacagaa cgaatggcat taccgctttc
     8701 atctatgcta atcacaccac caacagcttg aaaatcttta gtttgatgaa ttttactatt
     8761 aatacattcg ctgctaagat tatcaacgca agcattcata gcattcaaca ttacaaaata
     8821 cgcatcagcc cccatagccg aaaatgctgg aagttctttt gttcctttaa ctttctcata
     8881 agctgcaaca aaatcttttc ctaattgtgt agatggattg ttataatcaa aactatcagt
     8941 gaaaattact ccattgacag cacttccgcc aagatctata aaagtttgat tattaacacc
     9001 atctcctgct gctaaaagtt tatcaaaacc aatttgtctt gcttgtctcg caattaaagc
     9061 agcttcagga tgataaatag gcatataaac aaaatcagga tttaaactct taagttgcga
     9121 aaccacagct ctaaaatctt tatctcctga attaataaca agttttttta taattttccc
     9181 accattattc ttaaaagaat tttcaaaagc tcttgccaaa cctaaagaat aaacattgct
     9241 ttgatctatg atgataacag catttttaag tcctaaatcc ttagatacat aagtggcaaa
     9301 tttatctcct tgaaaattgt ctttaaaaca aactctactt gcatatttct ttttatctag
     9361 caatttatct ccagatgcca ctggagctat tagaggaatt tttttctctt ctgctataga
     9421 aatagcttga atggtatttg gagttgtagc ttctccaata atcccaagga ctttatctgt
     9481 tgctattaaa cgattaactc cgtttgaagt ttcaagctta tctccttttg tatctattgt
     9541 gataagttta ataacatctc catttgaaag ttttggctgt agcttattag ccagttcaat
     9601 tccgttaaaa acatcttgcc cataagctgc cacagttcca gttaaaggta aaactactcc
     9661 tatattaata tccttagcat ataagcaatt taccatagtt aaaacactta aagttaaagt
     9721 tagttttttc atagcattcc ttttaattat agtttttaca ttttatttta gaaatatatt
     9781 atgttttgtt ttttgcgcag gttcttcttc aagaagatct tttacttgca aatcaagcgc
     9841 aaaatttcca cctttaatat aagcaataat attatctata tcctcgtggc ttaaatttct
     9901 agcataaaaa gccatttgag aagctgttgt agaactacta ctatcaagag tataacctat
     9961 caaagctcct ttaatatcct caggagacat atcttttaaa attctagatc ctataacact
    10021 cttttcagca ttatctccat ggcaagtatt gcatttattt tgaaaataca aagccttcgc
    10081 tttttccata tcatattgct tatttgcatc aaaggtataa gtaaaaaatg atttcaaatt
    10141 aataccaaaa agcgcaacaa caaatattga actaataaac aaccatcgta taatcatgat
    10201 tttccttatt ttattgtaat ttccgtttgt gttttatttt gatatctatg tgtttttttg
    10261 ttgtattttt tttctttttt aatatcatag cgataacgaa cagtccctga aacttctata
    10321 tctttaaaga cttcatctaa aggagctgca aaaacaaaat gatttaaaat cataccaatt
    10381 aaaaatattt ttttcatttt tattctttaa acacaaaaaa cgattatatc aaaaaaagat
    10441 aatccttgtt aatgaccacc tttatgtaaa aaataaagtc ctacacaaag agctaaaatc
    10501 gatccagcaa gaaaagccat atccacagga gtagcaaatt tcatctgcaa aaccctttga
    10561 aagaaattta ccactaagac cataatgata acttttgcaa gcttgtcttt taattgatct
    10621 aagctatgca cctctaaaac cttgctttgt tttgtttgtt taaattcttc tatttcgctg
    10681 ataaaaagct cataaactcc aaaagaaaaa ataaacaaaa ctaaagccat aagataaaga
    10741 tcaacagctc ctataattaa agccaccaca tcctcatgca aatccacatt agaacctgca
    10801 tcaaaaaaat aattataagt ataaaatata acttttaaaa catcataact tgcaataaaa
    10861 aacaatacaa aagctccaat taaaccaaaa attacgggta aaattgtaac aatacgactt
    10921 ctaacaagca aagattcaaa tattttctct aacatttttt tccttattta ttttttaatt
    10981 ctaaccattt ttgcgcaata cgcacagcat ttgttgcagc acctacacga atttgatctg
    11041 ccacacacca aagatggagt atttttttat catacacatc agcacgaatt cttcctacat
    11101 aagtttcatt agtatcgcta gtcattaaag gcatagggta ttttttattt ttaggatcat
    11161 ctatgacaac aacacttggt gctttttcta aaatttcttt agcttttttt acatctattt
    11221 ctttttcaaa atgcatagta atggcttcgc tatgacttct taaaacaggc actcttacac
    11281 aagttgctga aacttctaaa tttttatgta aaattttttg agtttcattg accattttaa
    11341 gttcttcttt agtgtaatca ttatccataa aaacatcaat ttgtggaata agattaagtg
    11401 ctaaagtata aggaaaagtt tgaggttcaa attcatcaag tttaaaagca aaaaaacttt
    11461 gcatggcttc aaccaattct tgcattcctt cttttcctgc tccacttgca gcctgatagg
    11521 tacttacatc aacacgcttt aaattaaatg catcatttaa aggttttaaa acttgtacca
    11581 tttgtatagt agaacaattt ggatttgcaa taatccctgt ttttttccaa tctttaatat
    11641 cctcaggatt gcattcagga accaccaaag gaacatcttt ttccattcta aaatgacttg
    11701 tattatcaat tacaactgca cccgattcta ctgcaaattt agcatatttt tcactcacac
    11761 ttccacctgc gctaaaaaaa gcaatatcaa taggattttc tttaaataca ttttcagtaa
    11821 gttctttgac tttataagct ttgcctttaa attctacttc actacctaca ctttttgcac
    11881 ttgctaaagg taaaatactt tccactggaa aatcaagttc atctaaaaca tttaaaagct
    11941 cttccccaac cgcaccagta gcacccacaa tggctatttt ttgttttttt gacattacct
    12001 atcctttatt tgatattttt taattttttc atttaaaatt tttatatcca tacctaaaat
    12061 ttgagaagct tgatccttgt cataatctac acttaaaaga acttcacaaa tcaattcttt
    12121 ctctaaattc tttacatctt tttttatact tctagcttct aagaacaaat cttcacttga
    12181 aatttcatca ttttcactta aaatacaagc tctttgtaca acggatatta attctctaat
    12241 attaccagga aaatcatatt caagtaaagc atttttagct tcttggctga gctgtttttc
    12301 cttaaaatca tattctttac aagtatcttc taaaaccttt tgagctatac ctaaaatttc
    12361 ttctttgcgc tctcttaaag gcgggatatt aataggaaca gtgtttaaac gataatataa
    12421 atctgaacga aattcgccat tttttatttt ttcatctaaa tttgcattag ttgcactgat
    12481 aattcttaca tctattttga tgcttttcgt acttccaagt cgcgtaattt ctttttcttg
    12541 caaagctctt aaaagtttgg cttgaatttc ataaggcatt tcgccaattt catctaaaaa
    12601 caaagtaccc tcattagcca tttcaaaaag ccctatttta gttgcattag catcggtaaa
    12661 agcacctttt tcaaaaccaa aaagctcact ttcaatcaaa tttgcaggaa tagctgccat
    12721 attaatagca acaaaaggct tattagagcg tttagaatgg gtgtgaatat aacgagaaaa
    12781 tacctctttt cctactccac tttctccaaa aaacattaca gaggcatcag ttttagccgc
    12841 tttttgactt aaatttaatg ttttttctaa attaggagaa gttgaaaaaa aatctttatt
    12901 ttcttctttt ttttcatttt ttttgctttt tttatcggct gttttttctc ttatgatttt
    12961 agcacgctta atagcctcga ctaaagtatc aacatcaaaa ggcttggtta aaaaatcttt
    13021 tactcccaaa cgaaccgctt ctatagcacg acttaaagta gcatttcctg tcataataat
    13081 aaaatcatat ttattttcac aggctttaac aaattctatg ccatcaattc ctggcatatt
    13141 aatatctgta ataatcaaat ctgtattctc atctattttt tttaaagctt cagtagcaga
    13201 tttataagat ttaatattaa attcttcata ctctgctaat gcaatttcta aggatttgcg
    13261 catattaata tcatcttcta ctatgactaa attcatccta agccttttaa aaaatttctg
    13321 ctatagtatc caatttgcgc ttaattttga atttactttt ttttaagata ataaattatc
    13381 gcattttgtt cgccaaattc cacggtaaaa cgcaagggta aaattttaat ataagtttca
    13441 ctttgagcac gtaataagtc agtattaaca atatccttaa cactgatttt agctcctata
    13501 aagcaatcgc ttaactcatc tttatgagaa tttaaaaaat taaatttaat tgtttttggc
    13561 atattatcat caattaatcc taaagaagtt cgaggtaaaa cttttatatc ttgatcacta
    13621 taagaaattt cacataccca ttgttcttca acattttcac tttgcgtcat tgctaaggat
    13681 aaattttgat tttgatgaaa gagaatgaaa tttttactag aaagctctgc ccaaaaaata
    13741 aattcatctt gggcaaaaag cttaaagcta agaaagatta ataagcaaac aattctttcc
    13801 acttgtctgc atcgatttta agttctaagt ttactctata aagcccttga ttaaaattct
    13861 catcaataat acttgcattt tttatcaaac catttacttg cgcagtaata gttgaacttc
    13921 taagcattgc atcttttaca gtatctttac catttacttt cacaccataa agcttacttg
    13981 caagttgtct gtaagcatct gtaatcgctg ctctttttgc taaagctagg gcttgagcag
    14041 tagatactgt attcattgga gcaattcctt caccaactgc tgtaaaacta agttccgttt
    14101 cgctagcatc tggagccaac atcttttctt ctctgataat atcacgcaca tcatctttat
    14161 cgactttttg cacgataaca tcttgagatg gaggagtgct atttgcactt gaatttttag
    14221 ttgcactgtt tgcacttggt acacaaccag cgaaaattcc tgctattgct agcataaaat
    14281 aaattttttt catttttaca ccttcaaaat attgtaatta gtaaaataaa aagcaataag
    14341 cgttccaact ttaaacttat tgcaaatcta aaccaaagtt ttcatcgctt aactcatcct
    14401 cgtcattttc ctctttagga cacttagcga tgctaaccac ctcgtcattt tccacattaa
    14461 ctacaatgac gccacttgta ttacgccctg cttttctaat gctttgcata tcaacacgta
    14521 tcatcttgcc tgaacttgta agagccatca aatccatagt ttcatctact ataactacgc
    14581 taataagatc tttggttttt tctgtaagtt tcatacaaat tacaccctta ccacctctgc
    14641 tttgcaatct atattctcca gcattggtgc gttttcctat accttttgca cttatgctta
    14701 aaatttcttg ctcatcattt tctataacaa ctgcacctac taattcgtca tttttctctt
    14761 taaacttaat agccgtcacc ccacgactta cacgaccgat ttcacgtact ttagcaagtg
    14821 ggaatttgat acacatacct tttttggtta ctgcaaagag cattttacct tgtgtgctta
    14881 cactttcttc attttcaaga ttttcatcat ctaaattttc aatttcttga ttttctaaat
    14941 tttcttcacc accactggca aaaatttcat cttcatctct ttgaacaata atagcagtta
    15001 ccaactcatc attttcatcc aagttgatcg ctctaactcc tacacttctg atattttgat
    15061 attcactcaa atttgtacgc tttacaatac catttttagt aaagaaacat aaagatttac
    15121 tctcatcaaa atccgtggtt ggaataatag ccatgatttt ttcttcagct tgtaaattaa
    15181 taagatttac cactgctttt cctttagccg ttcttgagcc ttcaggaatt ttataaactt
    15241 taagccaata aagctgtcca cgatctgtta caaacataag cgtatcatgt gtatttgccg
    15301 taaagaaact ttctataaaa tcatcatcat aagtcgtaac ggctaatttt ccttttccgc
    15361 ctcgtttttg cttttcatat tgtttactag gcacacgctt aatataacca cgatgggtaa
    15421 tagttacaac catattttca ttaggaatca aatcttcaat atcaatatca tcataatcat
    15481 cttcaatttg agtaatacgt ggcacatcaa atttacttct aatttctttt aattcatcgc
    15541 gaattaaatt ttcaagcaag gtttcacttt ttaaaatttc ttcaagtctt gcaatttctt
    15601 tcattaattc tgcaagttca ttttcgattt tttctctttc aagtcctgtt aaacgaccta
    15661 gtttcatatc taaaatagca ttggcttgaa gctcactaag accaaattta gctaccaaag
    15721 aatctcttgc ggtattatta tcagaactgt ttttaattaa agcaatcact tcatctatat
    15781 tatcaagtgc aattttaaga ccttctaaaa tatgagctct tgctcttgcc ttttgaagtt
    15841 caaaaatcgt tcttctaata ataactgttt ttctatgggt taagaaaaga tttaaaagtt
    15901 ctaacaaaga gaaaatttta ggttctttat tgtgaattgc caacataatc acaccaaaag
    15961 tactttccat agtggtagat ttaaatagat tatttaaaac aatttcactc atagcctcac
    16021 gtttaagctc tataacaacg cggattcctt ctttattgct ctcatctctt acttcagata
    16081 ttccttcaat ttgcctttct ttaacaagct ctgcaatctg ctctataagc ctagctttat
    16141 tggtttgata aggaagctca tcgataacaa taacatcttt atttgtcttt ttttcaatat
    16201 gagttttagc tcgcactttc acgcgaccac gccctgtgcg ataagcttct ataatacctt
    16261 ttttaccata aattattcca cctgttggaa aatctggacc tttgataaac tgcataatct
    16321 cttctaggct tgcatcttta ttatcaagca aatataaaag tccatctatc aactcattta
    16381 aactatgagg tgggatgttt gtcgccatac ctacagctat accacttgaa ccatttaata
    16441 ataaatttgg aaccctagaa ggtaaaacat caggttcgct ttctgaacca tcataatttg
    16501 gaacaaaatc gaccgtatct ttatctatat cttttaaaag ctcatgagaa agtttactca
    16561 tttttgcttc agtataacgc atcgcagcgg cactatcacc atctatagat ccaaagttgc
    16621 cttgtcctgt aatacttgga tatctcatag aaaaatcttg agccattcta accaaagcat
    16681 cataaactgc tgtatctcca tgtgggtgat aacgacctat aacagcaccc actatacggg
    16741 ctgatttgac aaaatctgtt ctactttttg cctcatcatt ttgcatagca tataaaattc
    16801 ttctatgaac aggctttaaa ccatctcttg cgtcaggcaa agcacgacct ataataacac
    16861 tcatagaata gtctaaataa ctacttttta tagaattttc tatatctaca agttcaatat
    16921 cagaatcttt gctaaaaata ttctccataa aaatccttct attagttcaa agttttgatt
    16981 atagcatatt aaacttttgc atcagctaaa acaagagcaa aaagtacaga aattttattt
    17041 tcttctaaaa cttttttagc ttccaaaagg ctagaaccag ttgttacaat atcatctact
    17101 aaaattacag gttcgtgaat ggtttttaag agtttgtaat ttcttttatg tttttgacga
    17161 aattctaaac tttttccaga atatttcaca gaattttgtg cttttaaaac attaaaaaca
    17221 ggttttacaa attttgtttt aagatatcta gctaaaatag cagaatgtga ataaagcata
    17281 tcttcaacct tatcatctaa agctataaca ttaattgtca ttctaggatc aaaaaaatct
    17341 ttaaattttg caaaacttaa tttagcaagc attttataaa caaaataacc ataaaaataa
    17401 tgtttagagt gaagcaagtg ttgtatttca tggtatttat aaaaagaata gactttgaaa
    17461 ttattatcaa gctttcttac atttaaggaa aattcagaaa gctctagctc gcataattca
    17521 caaaagcaga gcagagcaaa agctccgcaa tttatacacc tcaaagttca gagattaaac
    17581 tagctgcttt atttgccatt tgttttatta acaaatgagt ataaaaagtt gtttctttta
    17641 aatcatcaaa accttgtaca tcttgcttgg tgcggattgt aaatttctta tttttattta
    17701 tatcactaac ttgtaaaact cctactagtt ttgaatgtaa tcctatagca tcttgagttg
    17761 ctccataaga tataaattct aaatcaatct tactcacata aggtgaattt tgatcgttat
    17821 tgtcaagcac aactattcct ctagcttcaa gttcttgttt taaataagta taaaataccg
    17881 cattaaaatt cacatcgaca aataactttt tccctttagc atttaaaacc ttttgccctt
    17941 cttttaaatc ataaaatcta tgtaaataaa cctttttcaa agcaatacca gtgtctaaag
    18001 tgcgtttatt ggcacaacat tgaattccaa catcgctaat gtataaaagc cctttaatct
    18061 ttgcttcaaa accaccagga ctttcacaag aactgcattg agaattttta gaaatttgat
    18121 taacttgagc aaaagtatct tgtttagttg cacaagcact caaaaataaa ataggcacta
    18181 taaaaatcaa aaatttttta aacatttttt ctccttagaa aattatttta aaattgtatt
    18241 aaaaatacaa gcaaatttca agccaagttt taaatttatc atcaatctat ctttaaaaca
    18301 ctcaaaaaag cctcttgagg taaatttacc ttacctatag ctttcattct ttttttacct
    18361 tctttttgct tttctaaaag ctttcttttt ctagtaatat ccccaccata acattttgct
    18421 gtcacatttt tacccatgga tttaacagtt tctcttgcga tgattttatt tccaatactt
    18481 gcttgaatgg ccacttcaaa aagctgtcta ggaactattt ctttcatagc actaacaagt
    18541 tctcttcctt tactttgcgc tttttcatta ggcacgataa tgcttaacgc atcaacattt
    18601 tcacccgcta ccttaatatc aagttttacc aaatccccta ctctaaattc tataggctca
    18661 taatcaaaac tcgcataacc ttttgttaag gactttaatt tatcataaaa atccatcaca
    18721 atctcattta aaggcacatc atattctagc aaaacacgct caggtgtgat atagtccatt
    18781 ttaacctgca ctcctctttt gcgatttaaa agagtgatta aattccctaa aaattcactt
    18841 ggagtaatga tagtagcttt aacataaggc tcttttatat gatcgatttt attaacagga
    18901 ggaagctcgc taggattttg aattttaata agctctccat cggtttgata aatttcgtaa
    18961 gtcacagttg gagctgtagc aatcaaatca agattaaatt ctctctcaag cctttctttg
    19021 ataacttcca tatgtaaaag ccctaaaaat cctaccctaa aaccaaagcc taaggccaaa
    19081 gaagtttcag gctcataagt aatagaacta tcattaagct ttaatttatc caaagcatct
    19141 cttaaatctt caaatttatc cgtttctata ggataaagtc ccgcaaacac aaaagcttta
    19201 gccttttcaa aaccacctat ggcttcttta gctttgtttt ttaccaaagt gatggtatcg
    19261 cctacttgta catcacctac ggttttaagc cctaaaacca ccacacctac ttcgcctgat
    19321 tgtaaagatt gagttttaat tggacttaaa gggtggggat aaaaaagatc ttgaactata
    19381 tgttttttat ccgtactcat gactaaaact tcatcgtttt tagcaatact tccttcataa
    19441 atcctaacca aagccaaagc acccaaataa ttatcaaacc aagaatcata aattaaagcc
    19501 ttagtaggag cttcatcatc tgtttttggt gcagggattt tagtaataat tgtttctata
    19561 agctctttta tacccactcc tgtttttgca ctcacgcaaa ttgcatcttt gcaatctata
    19621 cctataatat gctcgatttc atgctttact ttctcaacat cagcattagg taaatcgatt
    19681 ttattaatca caggaatgat ttcaagatta ttttcaagcg ctatataaac attagctata
    19741 gtctgtgctt caacaccttg agaagcatct actacaagca aagccccttc acaacttgcc
    19801 aaagaacgac tcacttcata agaaaaatcc acatggccag gagtatcaat aagatttaaa
    19861 acaaaatttt cattattaaa tttataattt aaacgcactg attgtgcttt tatggtgata
    19921 ccacgctctt tttctatatc catagtatcc ataacttgtg aactcatctg cctatcgcta
    19981 atagcaccac actcgctaat aatcctatct gcaagagtag attttccatg atctatatga
    20041 gctataatag aaaaatttct aatatttttt accgacaaaa tttcatccta aatataaaat
    20101 tttaaagcta ggattttaac aaaatttatg tttaaaacaa ataaatttta ttttatataa
    20161 aaaactttaa ttgaaattta tataaagtat attaaaatat caaaatgttt gaaaaatatt
    20221 taaaatcagc tatattttta gctctttatc ccttagcaat gttagcttct aatttgcacg
    20281 aatttatagc actaagtcaa aataatgaat cctatctcat taagcaaatg caaagcgaac
    20341 aagcaaattt agacaaagaa caagctttta gaaattacct accctctctt agtctaaact
    20401 cagcttatgt agccaacaat aaagatcgct tcattatcga tccacaagaa agtttatttg
    20461 ctaaagtttc tcttaatttt ttgctttttg atgggggtgc tagagaggct aatttaagag
    20521 ctttagaaag cagagaaaaa ttaagccttt tagacaaaga acaaaataaa aattaccttg
    20581 ccctaaatgc aatcacactt tattttaaca ccttaagtct tgaaaaaatt ttactagcca
    20641 atcaacaaaa agtatctttt ttaaaatcaa cttttgaaag attgcaaaaa ttttacgacg
    20701 caggacttag ccctaaagat gaacttgaaa gcattaaggc taaataccat ttaagcttat
    20761 tagagctcag tcaaaatgaa ttaaaacttg ccaatataca aaaagagatt aaaattttaa
    20821 gcgatacaga ttttaaagtg caagggaatg cttttttaga aaatccgcaa caagaaaaaa
    20881 gtcaaaacta tgaagtaatg atagctaaag aacaaatcaa tcttgctaaa gaaagtgtaa
    20941 atttagcaaa agctgaatat tttccaaaat tttatattca agataatttt aacttttata
    21001 aaaacaatta taatccaaaa gttccagctc cttttgcaaa tttagcggat caattcttag
    21061 aaaaatattc tcaaggtaat caatttattt taggtatgga atggaaaatt tttgatttca
    21121 atgcaagggc taaagaagtt gaaaaagagc gtttaaatgt tcaaatagcc aatgcaaatg
    21181 caagatttag cgagagaaaa aataaagaag aattaaatta tttagacaaa agtttaaaag
    21241 ttttacaaga acaaatttta gctcttaatc ttagcttaaa tgctgcaaat ttagcttttg
    21301 aaagtgtaga taaaaaatac caagcaggac ttgtttctta tgtagaatat cttcaagctt
    21361 tagaggttaa atttaaagca caaagcgatt tagagcttgc taaaaatgaa tttgaaatta
    21421 ctaaagcaaa ttattatttt aatgcgggta tagatcttaa ttcaaaggtt aaagaatgaa
    21481 aaaaattcta tttttacttc ttgtttttaa ttgcgccttt ggcgaagaaa tttacgcaag
    21541 tttcaatgta gaagcatcaa aacaaagcaa acttgccctt gaaagcatag gtttagttca
    21601 aaaaattcct gtagaaattg gacaaaaagt cagcaaagga gaacttttac ttactcttga
    21661 tcaagaaagt gaaaaaatag ctcttcaaaa tgctcaaaat tcttatcaac ttgcccttgt
    21721 agaatatgaa aataccaaaa gcaagatgca aaaaatcaaa gctgtagaaa atgttataga
    21781 caaacaaagc tatgaagata tgaaagctaa gtttgatgct gctaatttaa atttaaacaa
    21841 agcaaaaatc aatatagctt attataaaaa tatcatgaca aaaaaagaat tgcgcgcacc
    21901 ttatgatgct atcatcgcaa ataaatttat acaagttggc gaaggagtag gaggagtagc
    21961 tcaacctttg atagaaattt tttcctatcc acaaagcaaa ctgattttaa gttttgatga
    22021 aaaatacaaa gataaagtta aattaggcga tgatttcttt tataaaatcg atcaaaatgg
    22081 tacagaattg aaaggaaaaa tcagtcttat ttatccaagc atagaagtaa aaacaagaaa
    22141 aatttatgct gaagtgcaaa ctacaaatct aacacctggg ctttttggcg aaggtagaat
    22201 catcactaaa gattaaaaat gtttaaacta gctataaacc gaccaattac tgtgctaatg
    22261 tttttcttag ctcttatgat ttttgggcta atctctgctt ttagcatgag tgtaaattta
    22321 tttcctaatg tttccatacc tcttataaag attacaagca aggtaaatgg agatttaaat
    22381 ttcgtagaat caaaagtcac caaagaaata gaaaatgctc taagtgagat tgatggagta
    22441 aagaccataa cctcagctgc gtatgataat tttagtgtga gtgtagtcga gtttaaacta
    22501 ggtaaaaatc ttgaagtagc tgctaatgat gtgcgtgata aaataggaac tttaagccta
    22561 ccttctaagc ctgaaattga aaaaatcagt tcagattctg gttctgctat ttcgcttttt
    22621 ttatattcta aagataaatt acaactcatg cgtgaaatca atgacaaaat aaagcctttt
    22681 ttgcaaagag ttgaaggggt aggtaaaatc gaagctaagg ggtttttaga accccaaatt
    22741 cgcatagaat taaaaccaaa tgaacttaga aaatacaatc ttaacgccct tgatgtagca
    22801 aatattatca aaagtcaaaa ttttaaacaa gcccttggcg aacttaataa caatcaagat
    22861 aactatatca ttaaaggcta ttttgaagcc acaaatttag aagaacttag taatcttcgc
    22921 ataaaaacag gagtattttt aagtgatatt gctaatattt caagccttta tgaagatgaa
    22981 aaacaaagtg ctttatacga aggtaaagaa ggggtgcttt tagaactcgg aaaaatcaca
    23041 aattataaca cccttgaaat gattaaaaat gtcaaaaatg ccttgcctat tttagaaaaa
    23101 caaattccaa aagatataag cattaatatg ctttatgata aaagcttaaa tatccacaag
    23161 cacctttctc aagtgatttt tgatatggtt ttggggattt ttctaaccct tgttatcgtg
    23221 tttttatttt taagaaattt aagtgcaact ctcattgctt gcatagctat acctacttct
    23281 atcatttcaa ctttttttat tatcgatctt ttaggctatg atttaaaccg cttaactttt
    23341 atagctttaa ccttaagcat aggaattttt atcgatgatg ctatagtagt gattgaaaat
    23401 attgctaaaa aactaaaaac ttatccgcct ttacaagctg cttttttagg tatcaatgaa
    23461 ataggtttta gtgttttaag cataagtata gttttacttt gtgtttttat ccctatttct
    23521 tatatgaact ctatatcagg gctttttttc aatgccttag gcataagcgt tgcaagtggg
    23581 atagttataa gctttttggt ttctgtattt ttaataccta gtattggggc aagattttta
    23641 aatccaaaag aaaacaagtt ttatgaaaaa acagaagctt tttttgaaaa aatagagcaa
    23701 aagtatgaaa atttactcta taaaatttta caaaataaag taaaatttat cctagccact
    23761 cttgttttta tagggctttc ttttgcttta gccactcgca tagggcttga ttttttacct
    23821 atggaagatg atagtgaaat tcaagttttg cttgaaagca aaaaggattt aagtttagaa
    23881 gccatgaaag aaaaaagttt aaatttactt gaaaaaatca aaaatgatag caatgtcaaa
    23941 tacgcttttt tacttgtagg ctatgatgat gccaaagatg ctacaaaggc taaaatttat
    24001 gttaaactta aaaatttaga cgaaagaaat ttaagacaaa gtgccatagt aagtttatat
    24061 cgtcaaaaat ttcaagatga aagtttaaaa atcaaaattt tagaacttcc aaagatagag
    24121 ggtgcaggca ttgatgatcc cgtgcaattt ttaatcttag gagatgattt aaacactcta
    24181 aaagaagctg cttctcaggc aaaagaaatt ttaggcacta atgcacgcat tgtagatata
    24241 agtgataatg ctaatgctac aaaagatgaa gtagccttac acatcaacaa agaaaaagcc
    24301 aaacttttag atgtcaatcc tcaatatatc gctggggttt tagggtattc tttctcgcaa
    24361 cttagcgtag gaagcatgga tagaggcaat tcaaaagatg atattatcct aagttttgct
    24421 ccagaattta aaaaagacat agaagcttta aagcgcatta gcattaaaaa caaccaaggt
    24481 ataaatttag aactttcaag cgtggtggat tttatataca gtaaagattt aaaaactatc
    24541 aatcgttaca ataaaaaccg ctctgtgaaa atcacagctg gagtgaatga tctttcctta
    24601 ggagcggtgc aaaaactttt actagataat atggataaaa ttttaaataa caatccaagt
    24661 cttagctatg ctttttcagg ctttatcaat cttttaggtg aaaccgtgca aggttttgct
    24721 atggcagtag cacttgcttt tgttttaatt tatcttgttt tagccgcact ttatgaaagt
    24781 tttattctgc ctttaatcat catgataacc atgcctttag cctttggcgg agcttctata
    24841 gggcttttta tcacagggca taatttttca ctttttgtac ttattgccat catcttactt
    24901 tttggtatgg tggggaaaaa tgctatttta ctcgtagatg tagctaataa aaaatgccat
    24961 gaaggtttag atcccgataa agctctttta atcgctggaa aatcgcgctt aagggctata
    25021 ttgatgacaa cttttgctat gatttttgct atgctcccac ttgctctttc aaggggtgcg
    25081 ggctatgaag ctaattctcc tatggcaata gccattatct ttggacttat aagttcgact
    25141 ttgcttacct tactcgtagt acctgcactt tttaaattct gttttaaact agatagcaaa
    25201 ttaagaaaaa tttatgagag agaaaaatta aattaaccaa aatgattaat ttaatttttt
    25261 ttaagtatta ttcttataaa gtgcttttaa gttatcatag gcaatttgta ttttttcaaa
    25321 ctgttctctt gcgtaagctt tttctattgc actttttcct tgatgaaaat caggatgata
    25381 aagttttacc aaaatcaaat atttttgtct gatttcacta agatcatttt gcggagtgca
    25441 ttctaaagta ttaaaataat tactaaaaag cttagctaaa gcattaaatt tccatttcat
    25501 attttcttta ttgtgaatat tttggcgaaa ttttttatac tcttcgcggt caacttcaaa
    25561 attcacgcaa tattttaaat gctcgctctc atctgcaaaa gcttcaaaaa gttcaagggt
    25621 attctcgttt ttatattcta aaattagaat atttgtcatt tcattatatt ctatataatg
    25681 atcttgaaaa taatttctta tataagtaat aaataatttt tcattagagc ttaacttcat
    25741 caaaattcta cccgcaacaa aatcaatctt gataaacaac ataggcttaa gcatattatt
    25801 ttgctcaaaa attaatctaa aagttttaaa atgagcatct tgtaaattct ctataccttc
    25861 atttgtgctt ttgcgatatt tttgatctaa aacttttaag aaataacggc gctgtggaat
    25921 ttcattttct tcaaaaaaag aaaaaatttt attttttcgt cctatgacct ttgtgaaatt
    25981 tttggtaatc aagtctttaa aatactgaaa tacgctaata tcatctgtat taacattgat
    26041 agtttctaaa gtttgcacga tttgcatcta tttctcccat aaaacctcat tttcaaaaag
    26101 ctctttagtg ccttttaaaa tttcattggg tgtataatcg gctttataag ataaagattg
    26161 acactttttt acaaaatacc caagataaat ataatctaag ttcatttttt tagctatttg
    26221 tatttcattg agcaaagaaa atttacccaa agaaaaatac gaaaaatcag gatcataaaa
    26281 acaataaatg cttgaaattc catcctctaa aatatcaatc aaatcaacgc aaacgagctt
    26341 atcttctata taaaatgcaa gctcatatcc aaaattcata aaaccatcaa cataaa
//
LOCUS       DAEDTT010000007        26022 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.007, whole genome shotgun sequence.
ACCESSION   DAEDTT010000007 DAEDTT010000000
VERSION     DAEDTT010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26022)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26022)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26022
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.007"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..279)
                     /locus_tag="KLC54_000234"
     CDS             complement(<1..279)
                     /locus_tag="KLC54_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176647.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEE"
     gene            complement(266..1141)
                     /gene="era"
                     /locus_tag="KLC54_000235"
     CDS             complement(266..1141)
                     /gene="era"
                     /locus_tag="KLC54_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HBD9176648.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIIALNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDKHEYFYDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLIHRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
     gene            complement(1138..2457)
                     /gene="hslU"
                     /locus_tag="KLC54_000236"
     CDS             complement(1138..2457)
                     /gene="hslU"
                     /locus_tag="KLC54_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HBD9176649.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNIQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            complement(2454..2996)
                     /gene="hslV"
                     /locus_tag="KLC54_000237"
     CDS             complement(2454..2996)
                     /gene="hslV"
                     /locus_tag="KLC54_000237"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HBD9176650.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHASLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            complement(2996..3439)
                     /locus_tag="KLC54_000238"
     CDS             complement(2996..3439)
                     /locus_tag="KLC54_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HBD9176651.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTFKSLGLHEVSVKLGHAIHAKFNINIKAE"
     gene            complement(3452..4672)
                     /locus_tag="KLC54_000239"
     CDS             complement(3452..4672)
                     /locus_tag="KLC54_000239"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HBD9176652.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVMIIGRESANDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            4827..5072
                     /locus_tag="KLC54_000240"
     CDS             4827..5072
                     /locus_tag="KLC54_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HBD9176653.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLAIPSTKSIPKNAQNEYVVKL"
     gene            5069..5476
                     /gene="tsaE"
                     /locus_tag="KLC54_000241"
     CDS             5069..5476
                     /gene="tsaE"
                     /locus_tag="KLC54_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HBD9176654.1"
                     /translation="MKEFILAKDEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSTMQKYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            5469..6197
                     /gene="lptB"
                     /locus_tag="KLC54_000242"
     CDS             5469..6197
                     /gene="lptB"
                     /locus_tag="KLC54_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HBD9176655.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            6197..7447
                     /locus_tag="KLC54_000243"
     CDS             6197..7447
                     /locus_tag="KLC54_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HBD9176656.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNINSAFVDSKGLAKKSVYELLNEQILPPLFPTNK
                     SQELAKKIIECLNEEGYFEYDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FTLENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            7611..9035
                     /locus_tag="KLC54_000244"
     CDS             7611..9035
                     /locus_tag="KLC54_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HBD9176657.1"
                     /translation="MDFLTSLSEGGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCIGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIALVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIIIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAALGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMAAGYL"
     gene            9177..9364
                     /gene="kdpF"
                     /locus_tag="KLC54_000245"
                     /pseudo
     CDS             9177..9364
                     /gene="kdpF"
                     /locus_tag="KLC54_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344095.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
     gene            9374..11065
                     /gene="kdpA"
                     /locus_tag="KLC54_000246"
     CDS             9374..11065
                     /gene="kdpA"
                     /locus_tag="KLC54_000246"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
                     /protein_id="HBD9176658.1"
                     /translation="MLEILITLIIAFILALIFGNYLYKIASCKKTIFDFIFNPIDNLI
                     YKICAIDRKNMTWQKYSLHLIAFNALVAIFSFVIFYLQDKLFLNPNLINSMKGDLNLN
                     TVISFITNTNLQHYSGESALSLLSQNTGILLAMFVSSASGYSACMAFCRALCGMQMGN
                     FYEDFTRIITRLMLPLSFILAVIFISEGVVQNYHANFSVLTLENKFQSIATGPVAALE
                     SIKHLGTNGGGFFGANSSMPFENPTSLTNFLQILSMMLIPSACVVAFGLMVYHRKERQ
                     GFALMGKEGGVIFGAMGIIFIISLLLIYFSEKMSNPNLDSLGLNANLGNLEGKEIRFG
                     TDGSSLFSAVTTAFTTGSVNNMHDSLNPLSISATLLNMMLNVAFGGEGVGLMNMIIYV
                     LLTVFICALMIGRTPEFLGKKIESAQMKLIALVILIHPLLILVLSALAVVFAKDSISN
                     PSFHGLAQILYEFSSSAANNGSGLEGLKDDNLFWNLSTAFAMFCGRYLVLIAQLAIAG
                     SLLAKNTQENTANSLKTDNLTFMFVLVCIIYIFTALTFFPVLTLSSVAEYLSLWH"
     gene            11075..13120
                     /gene="kdpB"
                     /locus_tag="KLC54_000247"
     CDS             11075..13120
                     /gene="kdpB"
                     /locus_tag="KLC54_000247"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HBD9176659.1"
                     /translation="MSKKQNKLITKEILNNAIKGAFLKFDPRFMVKNPVMFMVEVGLI
                     LTLILSIFPTLFNGNSDERIYNILITFILFITLLFANFAESIAEGRGKAQAATLRQSK
                     KDSKARRIKSDGSEEMLNSSELKIGDIVLVKAGELIPNDGEIIEGAASVDESAITGES
                     APVMREAGGDFSSVTGGTTVLTDFLKIKILVGAGESFLDKMINLVEGAARQKTPNEIA
                     LNTLLIVLSLSFLVVVVSLYPFMQFLGVSLPISWLVALLVCLIPTTIGGLLSAIGIAG
                     MDRVTRFNVIALSGKAVESCGDVDTMILDKTGTITFGNRLANEFYEVQGISKEEMIKA
                     CVLSSLKDETPEGKSIVALAQKMGYELEGNDIKEFIEFSAQNRMSGVDLQDNTKIRKG
                     AFDAIRAYISEMNGKIPSDLETKVMEISNLGGTPLVVCKNEKILGVIYLKDTVKPGLK
                     ERFDELRKMGIKTLMCTGDNPLTAATIAKEAGLDGFIAECKPEDKIEAIKKEQAQGKI
                     VAMTGDGTNDAPALAQADVGIAMNSGTQAAKEAANMIDLDSNPTKILEVVEIGKGLLI
                     TRGSLTTFSMANDIAKYFTILPAMFSVVLPQMQILNIMHLATPQSAILSALIFNAIII
                     PLLIPIAMRGVKFKPMKSEHLLLRNLSIYGLGGMIAPFIGIKIIDIPTAWILRILGV"
     gene            13122..13730
                     /gene="kdpC"
                     /locus_tag="KLC54_000248"
     CDS             13122..13730
                     /gene="kdpC"
                     /locus_tag="KLC54_000248"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HBD9176660.1"
                     /translation="MLRTLLSFFVVMLILCTLIYPFALNTVAKFIFPYQSSGSLVDKE
                     GRPTLDISKAVGSKLLGQDFNKPYFLHSRASVSNYNTSDTNESSVSSGGFNYAMSNPA
                     LKERVQKDLQKFLDENPQITKEQIPLDLLSASGSGLDPHISLQAALVQIPRISQSSKI
                     TKEELEKIIQENTESKFLGIFGEEKVNVLAVNIAIAKAMKKE"
     gene            13733..15664
                     /locus_tag="KLC54_000249"
     CDS             13733..15664
                     /locus_tag="KLC54_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HBD9176661.1"
                     /translation="MQRQSPEQILKKLEVKAKEEEKNKLAKLKIFLGYAAGSGKTYAM
                     LSEARTLRDNGVDVVLGYIEPHDRPETMALTQGFESIANLEIPYKNIVLKEFDLDATL
                     KRKPALVLVDELAHTNAKGLRNEKRFQDIEELLKAGIDVYTTLNIQHLESLNDLVANI
                     SKIEVKERIPDRIFDEADQVELVDIEPNKLLKRMQDGKIYKEKQAKLALENFFRQERL
                     IALREIALRRLASRVNLRASEQRLINDDLAYHTGEHILVCINASNAKVIRAAARLALA
                     FHAKLSALYIKNPNIKEEKALEENIELAKSFDAEIISVYDDDIARQIAEYSSLSNVSK
                     IVLGKNKDKKKFKEEIFEAVAKKAPNIDLYLVNENQISTPKIRSKKGFDFLGFLKITG
                     VLLLATFIAFVFHKFNTQPSNIVMIFILAVFASSFISDNKIFAFYSSLVSVLIYNFFF
                     LEPIFSLKVHDSGNIITFTTMFIVGFLTAVFTRRLKLQSKELTKRAYRTAILLENSEK
                     LARVKSKQELWEQLGNQALKLLNLPIIIYPINKNNILSKPLLFFNDDKQMLKNCFSAD
                     EIAIAQWVATNKERAGVCTNTLPNANAMYLPIEDGEKTKGVIGIVLKEKRPLQDFQYE
                     ILSALLNEAGVRTRDIFLL"
     gene            complement(15659..17632)
                     /gene="uvrB"
                     /locus_tag="KLC54_000250"
     CDS             complement(15659..17632)
                     /gene="uvrB"
                     /locus_tag="KLC54_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HBD9176662.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSTTASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKDRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            17786..18016
                     /locus_tag="KLC54_000251"
     CDS             17786..18016
                     /locus_tag="KLC54_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176663.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            18006..18248
                     /locus_tag="KLC54_000252"
     CDS             18006..18248
                     /locus_tag="KLC54_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176664.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            18245..18682
                     /locus_tag="KLC54_000253"
     CDS             18245..18682
                     /locus_tag="KLC54_000253"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HBD9176665.1"
                     /translation="MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDY
                     EMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEKLFYCLNDCDYSLLDTPIYSDFK
                     SWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI"
     gene            18664..20517
                     /locus_tag="KLC54_000254"
     CDS             18664..20517
                     /locus_tag="KLC54_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HBD9176666.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKTKKN
                     LKAIVLKECQKPDFKTVEIKEITKYFLTPLQFELANFIVYYYASKLGFVLGFFETSPK
                     YECQKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMKKRLEVYFKDNFFLWHSKISKKKKQEYLERFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIKVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELGITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNVLKCHYCNYTSLIEQNCPSCKGEMLEARKMG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKDFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IEDYDAFLKDELENRKDLYPPFKRLLRVLIEDEDQKNAQKLCEKLAYQFKNIKQVELV
                     GYGICGVEMLHGKYRFYLLLRSENYKALVAIENYILQFKNVSADIDPIDFI"
     gene            complement(20510..21268)
                     /locus_tag="KLC54_000255"
     CDS             complement(20510..21268)
                     /locus_tag="KLC54_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP:phosphoglutamine cytidylyltransferase"
                     /protein_id="HBD9176667.1"
                     /translation="MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSA
                     GINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFILKCIEEKQ
                     DLIISYADIVYFQDCVQKLINAKEELAIVVDKSWRKLWNKRFANPLEDAETLKMTNGY
                     IIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSF
                     LQALIEKYNNAKAVEIDGNWCEIDFMSDLKINFI"
     gene            complement(21270..21872)
                     /locus_tag="KLC54_000256"
     CDS             complement(21270..21872)
                     /locus_tag="KLC54_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HBD9176668.1"
                     /translation="MFIGITQRLIYNESYHEERECLALDWGKLFNKDLFKNFTPLPLS
                     YEIDFSHYKHLIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLKEKIPLLGICR
                     GAQMIAHYFNSHISPCENHIGKHEVFFSKEKFISNSFHNFAIEKLGEDLVELCLAKDN
                     TIEAFKHKYENIFGIMWHIERENGLNNIQILKEWFSLIKE"
     gene            complement(21863..24202)
                     /locus_tag="KLC54_000257"
     CDS             complement(21863..24202)
                     /locus_tag="KLC54_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176669.1"
                     /translation="MAELKFKTKAQNLKNLQTKLKKAKVLSLVLTSLEELISNEDKVL
                     QDIQTLKANRLIIRSSSLSEDSMKNSNAGAFLSLANIKADSKDELLKALYEVANSMPS
                     KSDEILVQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNSSITDGSSKSAKTYYH
                     YRDYLEFKDIRLQKIIELIKELEVLYNCCFLDVEFAFAIQDDEEELFCLQVRPLVMHE
                     KNNLFHSLPKEALYRFYKRFESLKESRSRVLGDKAIFGVMPDWNPAEIIGLRPKRLAF
                     SLYKEIITDNIWAYQRDNYGYRDLRSHPLIHSFLGIPYVDVRLSFNSFIPKKLDENIA
                     QKLVNFYLDKLNKNHELHDKIEFNIVYSCYDFNSSKKLEELLNHGFNENEIKRLEFSL
                     LELTNKIINPRSGLYLKDIQKAYKLKERYDGIINSNFSLIDKIYWLIEECKRYGTLPF
                     AGVARAAFVAMQLLNSLVEIDFITKEEKDDFLNSLNTVSKNLSKQTNHLNFHNKDQFL
                     KDFGHLRAGTYNILSPRYDEDFELYFDVDQKDSKVYLQDKAFVFSEEKTKALNALLRE
                     HGLEINACEFFDFLKQAIEGRELVKFEFTRLLSKAIVYIEELGKYYGIEKEDLAHLDI
                     KSILNLYSSLYSINPKEQFVEEINRNKKEYELTQAIKLPSLLCNADEIFSFYNHSIIP
                     NFITQKSITAFTAKENDKDLEGKIVLIYAADPGYDYLFTKNIAGLITCYGGANSHMAI
                     RASELGMPAVIGVGEENFEKYLKAKKINIECESEQIFCL"
     gene            complement(24217..24978)
                     /locus_tag="KLC54_000258"
     CDS             complement(24217..24978)
                     /locus_tag="KLC54_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HBD9176670.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKKDIKVA
                     DIGAGTGNLSIMLLERGCKVVSVEPNDAMREIGIERTKGEKVDWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALEEAHRLLKSEGYFSCMWNHRDLNDPVQKIAEDTIVEFVP
                     NYTRGTRREDQRPIIESRKDLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLEAD
                     EGNELFNKISDKISQRLPKEFSIKYTTRCWSAKKI"
     gene            complement(25031..25804)
                     /locus_tag="KLC54_000259"
     CDS             complement(25031..25804)
                     /locus_tag="KLC54_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HBD9176671.1"
                     /translation="MKQGDFTEVAKHYHNRPAYSPFLLEKLVACINDKNKNLKDLNIV
                     EVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQKFTQNLSNISWHKGSGEETCMSN
                     NQADWVIMASSFHWTDPKKSLPEFNRILTGGGYFTAIWNPRHIVEGSVFDEIEKEIKH
                     IVPELARVSSGTQNVKKWEEILVSTGDFTDCFFMECDYKEFWDKERYLGAWHSVNDIQ
                     AQAGEKRWKEILEMIEAKISHMQSIEIPYKIRAWTARKA"
BASE COUNT         8458 a         3917 c         4188 g         9459 t
ORIGIN      
        1 ttcctcaata aatctttcat caaacaaagc ttgaaaaatt aaaggctcag gaaagcaaaa
       61 acgacttttt ttcaatttgt aaacaggcgc taaaaaacaa tgataaattt cattatgttt
      121 aaaaaaagct atttggtagt caaagggttt gcttagctta aaatctgcag ttaaattgtt
      181 aaaaagttca tcttctttgg atattcctgt tctttgagca taaagcaaat ctgtagattt
      241 tataaaattt attttattta atgaattaat tttcatcatt taaaagtttt tttaaaaatt
      301 cttcatcttt ttgccagttt tttttcactg ttacgaaaag ctttaaaagt accttttttt
      361 gtgcaagttt tgaaatttta aagcgtgcat ctttgcctat tctttttaaa gttgcccctt
      421 cttttcctat aagcataccc ttgtgagagt ttgtatcggt gatgatattg gcttctagga
      481 ttaaaagatt aggtgtgtct ttggtgcgat ggataagcac ttcgctacta taaggaagct
      541 catcacttaa attttcataa atactttcaa gtatgaaatc tctataaagt tctttttcgc
      601 tactcgcact taaaaattca ggatcataaa aatactcatg tttatcaagg tattttacta
      661 tttcatctaa taagcctttt ttatagcttt ttttcttaga agaataagga atgatagctt
      721 taaaatgttg gctaaatttt gcatattcgc taagtttttt taaaagtgta gcattgtcgg
      781 ttaaatctac tttatttaaa gcgatgatat gtggtacttg tgggtttaga ctaagaaaat
      841 tttcatagtc ttttgtacta tcaaaaacac tcgccacaaa taaaatcaca tcacaatccc
      901 ccatggattt aatagcactt tggacaagca gttgattaag cgtagcaccg ctttcgtgaa
      961 gtcctggggt atcgatgaaa atgatttgat ttttttcatg catcactatg gctttaattt
     1021 tacgtcttgt ggcgttttgt ttgtgagaaa ctagggcgat tttttcttct aataaggaat
     1081 tgattaaagt actttttcct gcattagtac gccctatgat gctaacaaag ccacttttca
     1141 caaaatatac cttgcaagat ctttattttc tatgatatct ccgagttttt cttctaccat
     1201 ttttttatcc actacgaatt ttttacccgc atactcatca gcttcaaagc ttagatcttc
     1261 aagtaatttt tctatcacag tatgtaagcg tctagcacct atatcttgca tttcttcatt
     1321 ggctcttgaa gctattttcg ctatttcttt aatagcttca tcatcaaatt caagttctaa
     1381 attttcagtt tttaaaagct gagagtattg ttttaaaagt gaatttttag ggcgtgttaa
     1441 aatttcataa agagctttat catcaagact atctaattcc actcttaaag gaaagcgtcc
     1501 ttgaagttca gggataagat cacttggttt gctaagatga aaagcccctg cagcgataaa
     1561 aagaatatga tcggttttta aagtacctat ttttgtttgt atatttgatc cctcgactat
     1621 aggaagtaag tctctttgca ccccttcttt acttggatct tggcgatttg aatttccgct
     1681 tgaaacagcg attttatcga tttcatcaat aaaaataatc ccttcatttt ccgctctttt
     1741 taaggcttcg cttttgatac tttcttgatc taggattttt tctcctgctt cgttttttaa
     1801 agcattttta gcgtctttga ttttcatttc ttttttgact tttttactgc caacacctat
     1861 aaccttaact atatcttgca ttgcacccat ttcaggaggt aggttaggat tggtatcgaa
     1921 catattttgc gaaatttcta tctctatagt gctttcatca agatcgccat ttcttagttt
     1981 agttctcatt ttttcaagac tgtttttata ttcttcttgt ttttcatcgc tgataccctt
     2041 tggtaaaggt ggcaaaagtt tttctaaaat tttattttct ataaattcat cgattttatc
     2101 tttgtttttt tctctttgct cattttttac taaatttaaa gccgcattgg caagatctct
     2161 taccatactt tctacatcac gacctacaaa acctacttca gtatatttgc tcgcttcgat
     2221 tttgataaaa ggaaagccca tcattttagc taaacgccta gcgatttctg tttttcctac
     2281 gcctgtagaa cctatcatca agatattttt tggcactata tcatcttgca actcagggct
     2341 aagttgcatt ctgcggtagc gatttcttaa agctatagct atgatttttt tagctttttt
     2401 ttgtcctatg acataatcat ctaaaaattt aacaatttct tttggagtta gattcatttc
     2461 tcatcctcga tcacataagt tttgatatta gtattggtat aaatgcaaat ttcacccgcg
     2521 atttgaaggc ttgattttac aagctcttct tcatctaaac ttgcatgttt tgctaaggct
     2581 ctagcagctg aaagtgcata gtttccacca cttcctatgg ctgcgatttg tccatcttcg
     2641 ggttcgacca catcgcctgt accagaaagt aaaaaaatgt gatttctatc aagtacaagc
     2701 atcatggctt caagttttct taggtatttg tcctttctcc attctttaga aaagtcaatc
     2761 gctgctttta aaagatcgcc tttagaactt tgaaggagat tttcaaacat atcaaaaaga
     2821 ttaaaagcat cagctgttga gcctgcaaaa ccggctaaaa ctttaccatt attaagtttt
     2881 cttattttta cggcattgcc ttttaatact gtgtttccaa agcttacttg tccatctcca
     2941 ccgattacgg atttgttttt gcctttgtaa gctaaaatcg ttgttgcgtg aaacattatt
     3001 ccgcctttat atttatatta aatttagcgt ggattgcgtg tccgagcttt acgcttactt
     3061 catgaagtcc aagactttta aaagtgtcac attctaaact ttttttatcg atttctatgt
     3121 gactttgctc ttttagggcg tgagcgattt catctttggt tactccacca aacaaacttc
     3181 catttgcacc tacgggtttt gaaatttcaa gagtgatttt gctaagttct tctttgagtt
     3241 tttctaaatt tgcgatttca aagcgtaaat tttcagcctc ttttttcttg tcgctttcgt
     3301 attttcttaa aacttcatta gtagctgctt tagcaaagcc tttagcgatt aagaaatttt
     3361 gtccgtagcc gtcttttact tcttttattt ctcctgcttt tccaagtgct tttacatctt
     3421 tgattaataa tactttcatt ttattccttt attaaaattt tcttccattt tttcctgcga
     3481 tgataaaacg caaagcatta agcttgataa agcctgctgc gtctttttga ttatacactt
     3541 catcttcttc aaaagtacaa taagctgcgt taaacaagct atcatttgca ctttcgcgtc
     3601 ctataatcat cacattgcct ttgtaaagct cgagttttac tctgccattg gcatgaattt
     3661 gtgactcgtc gattaaggct tgaagcatca ttctttcagg cgagaaccaa tagccattat
     3721 aaattaaact tgcgtatttt ggcatgagtt catcttttaa gtgcgctgct tctctatcaa
     3781 gcgtgatgct ttcaagtgct ctgtgtgctt ttaaaagtat agtaccgcct ggagtttcgt
     3841 aacaaccacg gcttttcatg cctacatagc gattttctac tatatcaagg cgtcctatac
     3901 cgtgtttgca gcctagttcg ttaagtttgg ttaaaagtcc tgcgggactt agtttttctc
     3961 catttatcgc tactaaatct cctttttgga aatcaagttc tataatttca ctttcatttg
     4021 gagcgtcttt tgggctttta ctccatctcc acatatcttc ttcaggtgcg tgtgcaggat
     4081 cttctaaaac aagtccttcg taagaaatat gaagtaaatt tgcgtccata gaataagggg
     4141 attttccttt tttcttagaa atatcaatac cgtgtttttg cgcataagca agaagttttt
     4201 cacgactgtt taaatcccac tcacgccatg gagcgatgat ttttaaatcg ggattaaaag
     4261 caagataacc aagttcaaaa cgcacttgat catttccttt acctgtggcg ccatggctta
     4321 ccgcatcagc acctgtttgc agggcgattt gtgcttgagt ttttgctata agtggtcttg
     4381 ctatacttgt tcctaaaaga tattctcctt cataaatcgc attggctcta aacataggaa
     4441 atacataatc tttaacaaat tcatctctta aatctttaat gaaaatattt tcttctttta
     4501 tgcctaaaga aagggctttt tttcttgcag gttcgagttc ttcaccttga ccaatatctg
     4561 ctgtaaaagt tacaacttca caattatact catcttgaag ccattttaaa atgatgctcg
     4621 tatcaagccc tccagaatac gctaaaacta ctttttttac ttcatttttc ataagatatc
     4681 ctttgttaaa atagatttga aaattgtaaa attgtatcca aatttcatta aagaaaagtt
     4741 tttacttgct attttcttaa aaaataaagc aaaggcgtaa gcaaattttg ttctaaaaat
     4801 tgattttttt tgctaaaatt gcttttatga gagtagataa atttttaaat gtagttaata
     4861 tcacgaaaag aagagctatt tctgaggata tgtgtaaaag tggtgtagtg gggattaatg
     4921 gcgttattgt taaggcgagt aaagaggtta aggtgggtga tatcatcact ttgcatttta
     4981 ctgaatacac tcaaaaatat aaagtcctag ctatacctag cacgaaaagc attcctaaaa
     5041 acgcacaaaa tgaatatgtg gtaaaattat gaaagaattt attttagcaa aagatgagat
     5101 caaaacgatg cttcaaataa tgcctaaaga aggtgttgtt ttgcttcaag gagatttggc
     5161 tagcggaaaa acaagcttag tacaagcttg ggttaaattt cttggtcttg atgcaagggt
     5221 agattctcca actttttcca ctatgcaaaa atatgaaaat catgatattt gcatttatca
     5281 ttatgatatt tatcaagaag gtttagaagg acttttagcg aatggtttat ttgaaaattt
     5341 ttttgaaaaa ggtttgcatt tggttgaatg gggcggtgaa aatttgaaaa aaactttaat
     5401 gaaatttgga atttctacta tccagattaa aattagcatt aaagacgaca aaagaaagta
     5461 tgaaatttat gagtaaatta gaaattgtaa atttagaaaa aattattaaa aaaactaaga
     5521 ttatacatgg aatttcttta gaggttaata gcggagaagt tgtaggactt ttagggccaa
     5581 atggtgcagg aaaaacgaca actttttata tgatatgtgg acttatttcc ccaagtagtg
     5641 gaaaagttct tttagatggt ttagatgtga caaaagatcc tttaaataaa agagctagat
     5701 cagggatagg ttatttacct caagaaagta gtatttttaa ggatttaagc gtagaagata
     5761 acctgctttt agcggctcag attttttata aagataaaaa aattttacat gataaagttg
     5821 agcaaatgct tgaactctta agtatagagc ctattcgttt aaggaaaggt ttaagtttaa
     5881 gtggaggtga aagaaggcgt tgcgagatcg ctagaagctt gatgtgcgaa cctaagtttt
     5941 tacttcttga tgagcctttt gcaggtgttg atcctatagc agtggctgaa attcaaactt
     6001 taattaaaga gcttaaaaga ttggggattg gggttttaat taccgatcat aatgtgcgtg
     6061 agactttggc tatttgtgat agagcttatg ttataagatc aggttctttg cttgctagtg
     6121 ggaatgctga tgaaattgca accaataaag acgtgaaaaa gtattattta ggagcggagt
     6181 ttaaactcct tgattgatgt taaagcaaaa aatcacccaa gcgcccaaga ctaaaatttc
     6241 tcaaacttta cgctcttggt tgccgatttt acaagcaaat atagaggatt taaaagaaaa
     6301 tttagataaa tttgctgagg ataatccttt cttaaatgtt caagattcga tacaaactca
     6361 tgataagggt aagaattatt ttgattcatt ttataaacat aatataaatt cggcttttgt
     6421 ggatagtaaa ggacttgcca aaaaaagtgt ttatgagctt ttaaatgaac agattcttcc
     6481 tcctttattt cctacaaaca aatctcaaga acttgcaaaa aaaattatag aatgcttaaa
     6541 tgaggaagga tattttgaat acgatgaaga atttttaaaa gagtattcct tagaagaaat
     6601 tgagcgagta agagcaagat ttaaattttt agatcctgta ggagtgggag ctaaagatta
     6661 taaagaagca tttttattta ctcttgaaaa tatggaatta gatgaagata ttgatgagtt
     6721 ttgtagaatg ttaattatgg attttgaaaa tatacaaaac tataccaaag agcctttata
     6781 taaagaagca ttagctgtac ttaagcgctt tagcactccc ccttttttgg aatattttga
     6841 agattctcgt ataattgttc ctgatatttt tgtttataaa gaaaatggtg aaattaaagt
     6901 aaaaatcaat gatgattatt atcctgaaat ttcaatccaa actgatggtt tagagcatga
     6961 ttttttaagt cattacatca aagaagcaaa aaatttagtt gatgctttag cgatgagaaa
     7021 agctactctt tataaaatag ggcttatgat agtagaatat caatatgatt ttttcatggg
     7081 aaaagagata aaacctatga cttttaagga tttagcactt gatttagaac gcaatgcttc
     7141 gactatatca agagctgtgg caaataaata tttaagttgt gaaagaggac ttatcccctt
     7201 gcgtgatttt tttgcttttg ctcttgatga agagggagag acttcaaatg taggtgttaa
     7261 agaatttgtg gcaaatttag taaagaatga agatcgcaat aaacctttaa gcgatagtaa
     7321 aattttagaa ttaatcaaag aagaatttaa agtcgatata gggcgaagaa ctattacaaa
     7381 atatcgcaaa catcttaata tagcaagctc tacagataga aaaaaattat atgaacttga
     7441 aggataaaat tctatcaatc tatcaaaccc attacacttt tgttttatat ttaaatttaa
     7501 tttaaataat ataaaaaatt attgttttat ttttagaaat attattcttt aatttaaaaa
     7561 tgtgatacaa taataactgt ttttaaatat caattttcaa aggagttaaa atggactttt
     7621 taacaagcct tagtgaggga gggcaatttg caatccaaat cattatcgtt ttaatttgtc
     7681 ttttttacgg tgcaaaaaaa ggcggcatag cgcttggttt acttggtggt ataggtattt
     7741 taatgcttgt atttgctttt catataaagc ctggaaaacc agccatagat gttatgctta
     7801 cgattttagc ggtagtggtt gcgagtgcaa ctttgcaagc aagtggtggt ttggatgtta
     7861 tgcttcaaat agcagaaaga attttaagac gcaatcctaa gtttttgaca atattagcgc
     7921 cttttgtaac ctgctttttg accatacttt gcggaacagg acatgtggtt tatactatta
     7981 tgcctattat ttatgatata gcgattaaaa acggtattcg tcctgagcgt ccaatggcgg
     8041 cagcttctat atcatcacaa atgggtatta ttgcatctcc tgtatctgtg gctgttgtga
     8101 gtttgactgc tttgctttta aatgctaatc ataaattagc aggttttgat ggttatatta
     8161 atcttcttca aattaccata cctagtacat tatttggtgt attgtgtata ggaatttttt
     8221 cttggtttag aggaaaagat ttggataaag atgaagtatt tcaagaaaaa cttaaagatc
     8281 ctgaatttaa aaaatatgtt tatggggatt ctaaaacact tttaggtgtt aaacttccaa
     8341 aaagcaattg ggttgcaatg tggattttct taggagctat tgctttagtg gctttattag
     8401 gtgtatttga tttcttgcgt ccaaactggg ggcaagttgt aaaaaatggc attcctcaag
     8461 tagatgcttt aggcaatcct aaaatggatg ttttatccat ggtttcagtt attcagatgt
     8521 ttatgctttt agcaggttct ttgattatca tctttactaa aacagatgca aagaaaatcg
     8581 gctctaatga aatttttaaa tcaggtatga tagcacttgt tgcggttttt ggaatttctt
     8641 ggatggctga tactatgttt gcagttcaca ctcctatgat gaaagcagcg cttggagata
     8701 tagtaaaaga gcatccttgg acttatgctg taatgcttct tttaatttca aaatttgtaa
     8761 actctcaagc agcggctatt tcagcttttg ttcctttggc tttaggaatt ggtgttgaac
     8821 ctggtgtaat tgttgccttt gcggctgctt gttatgggta ttatatttta ccaacttatc
     8881 caagcgattt agctactata caatttgata gatcaggtac tactcacatc ggtaaatttg
     8941 ttatcaatca tagttttatt ttaccaggtc ttataggtgt aatcacttct tgtatagcag
     9001 gatattttat tgctatggca gcgggttatc tttaacaatt tttagcagga tttttcctgc
     9061 taaatttttc atttgtcttt ttatttaata tagataaaaa ttataaataa atcataaaat
     9121 tagtattaat caaaatataa gcttaacaag gatagaataa atcctatttt gaatcaatga
     9181 gaaagggcta tcctatggat gttatctttg ctttgcttct gcttttagct tttggtagtt
     9241 tatggttttt tatccgtttt tgtgaagttc aaactaggac acgcggatga tatttttact
     9301 agttttaagc ttaatacttg ctctttattt attttatgct ctattatatc ctgaaaaatt
     9361 ttaaaggaaa aatatgctag aaattttaat aacactgatt atagctttta tattggcttt
     9421 aatttttgga aattatcttt ataaaattgc aagctgtaaa aaaactattt ttgattttat
     9481 ttttaatcca attgataact taatttataa aatttgtgca attgatagaa aaaatatgac
     9541 ttggcaaaaa tattctttac atttaattgc ttttaatgcc ttagtggcta ttttttcttt
     9601 cgtgattttt tatttgcaag ataaactttt tttaaatccc aatttgataa attctatgaa
     9661 aggggatttg aatttaaata ctgtaattag ttttattaca aatacaaacc ttcagcatta
     9721 tagtggagag agtgctttaa gtttgctttc ccaaaataca ggcattttac ttgctatgtt
     9781 tgtttcaagt gcaagtggat attctgcttg tatggctttt tgtcgtgctt tatgtggtat
     9841 gcaaatggga aatttttatg aagattttac gcgtattatt acgcgtttga tgttgccttt
     9901 aagttttatt ttggctgtaa tttttatctc tgaaggcgtg gtgcaaaact atcacgcaaa
     9961 ttttagcgtg cttactttag aaaataaatt tcaaagcatt gccacaggtc ctgttgcagc
    10021 tcttgagtct ataaaacatt tagggacaaa tgggggtggt ttttttggtg ctaattcaag
    10081 catgcctttt gaaaatccta cttcacttac aaatttttta caaattttat ccatgatgct
    10141 tattcctagt gcctgtgttg tagcttttgg attgatggtt tatcatagaa aagaaagaca
    10201 aggttttgct cttatgggaa aagaaggggg agttattttt ggtgcaatgg ggattatttt
    10261 tatcatttct ttgcttttaa tttattttag cgaaaaaatg tcaaatccaa atttggattc
    10321 tttgggttta aatgcaaatt tgggaaattt agaaggtaaa gaaataagat ttggcacaga
    10381 tggttcgagt ttatttagtg ctgtaactac tgcttttact acaggaagcg tcaataatat
    10441 gcacgatagt ttaaatcctt taagcatcag tgctactttg ctaaatatga tgttaaatgt
    10501 ggcttttggt ggcgaaggag tagggcttat gaatatgatt atttatgtgc ttttaaccgt
    10561 gtttatttgt gcattaatga taggcagaac tccagaattc ttgggtaaaa aaatagaaag
    10621 cgcacaaatg aagcttatag ctttggtaat tcttatccat cctttattaa tccttgtttt
    10681 aagtgcatta gctgttgttt ttgcaaaaga tagtataagc aatcctagct ttcatggctt
    10741 ggctcaaatt ttatatgaat ttagttcttc ggcagcaaat aatggttcag gacttgaagg
    10801 tttaaaagat gataatttat tttggaattt aagtacagct tttgctatgt tttgtgggcg
    10861 ttatttggtt ttaatagctc agcttgctat agctggatcg cttttggcta aaaatacaca
    10921 agaaaatact gcaaattctt taaaaacgga taatttaact tttatgtttg tgcttgtttg
    10981 tattatatat atttttactg cacttacttt ttttccagtg cttactttat caagcgttgc
    11041 agaatattta tctttatggc attaaggaga gtcaatgtct aaaaaacaaa ataaactcat
    11101 tacaaaagaa attttaaata atgccataaa aggagcattt ttaaaatttg atccacgctt
    11161 tatggtaaaa aatcctgtta tgtttatggt ggaagttgga ttgattctta ctttgatttt
    11221 aagtattttt cctactttgt ttaatggaaa ttctgatgaa agaatttata acatcttaat
    11281 cacttttatt ttatttataa ccttgctttt tgcaaatttt gcagaaagta ttgcagaagg
    11341 aaggggtaaa gcccaagcag ctaccttaag acaaagcaaa aaggattcta aagctagacg
    11401 cataaaaagt gatggcagtg aagaaatgct taattctagc gagttaaaaa taggtgatat
    11461 agttttagtt aaagcaggtg aacttatacc taatgatgga gaaattatag aaggtgctgc
    11521 aagtgttgat gaatcagcta ttacaggtga aagtgctcct gttatgcgtg aagcgggcgg
    11581 tgatttttct tctgttacag gtgggactac ggttttaact gattttttaa agattaaaat
    11641 tttagttgga gctggggaaa gttttttaga taaaatgatc aatcttgtag aaggtgctgc
    11701 gcgtcaaaaa actccaaatg aaattgctct taatactctt ttaattgttc ttagtttgag
    11761 ttttttggtg gtggttgtaa gtttatatcc ttttatgcaa tttttaggcg tgagtttgcc
    11821 tatttcgtgg ttagtagcat tgcttgtatg tcttattcct acaactatag gggggctttt
    11881 atcagctata ggaatagcag gtatggatag ggtaacgcgt tttaatgtga tcgcactttc
    11941 aggcaaggct gttgaaagtt gtggtgatgt tgatactatg attttggata aaacaggaac
    12001 gattactttt ggaaaccgtt tggcaaatga attttatgaa gtccaaggta taagtaaaga
    12061 agaaatgatt aaagcttgtg ttttatcctc tttaaaagat gaaactccag aaggtaaaag
    12121 catagttgca ttggctcaaa aaatgggtta tgaattagaa ggtaatgata ttaaagaatt
    12181 tatcgaattt agcgctcaaa atagaatgag tggtgtggat ttacaagata atacaaaaat
    12241 tcgcaaaggt gcttttgatg ctataagagc ttatataagc gaaatgaatg gaaaaattcc
    12301 tagcgattta gaaactaagg taatggaaat ttcaaatctt ggtggcactc ctttggtagt
    12361 gtgtaaaaat gaaaaaattt taggagtgat ttatctaaag gatacagtaa aaccaggact
    12421 taaagagcgc tttgatgagc ttagaaaaat gggcataaaa actttaatgt gtactggaga
    12481 caatccttta acagcagcta ctatagctaa agaagcaggg cttgatggat ttatagcaga
    12541 atgcaagcct gaagataaaa tagaagccat taaaaaagaa caagctcaag gtaagatagt
    12601 agccatgaca ggagatggaa ccaatgatgc tccggctctt gcacaagctg atgtaggtat
    12661 agctatgaac tcaggaactc aggcggccaa agaagcagcc aatatgatag atcttgattc
    12721 taatcctact aaaattttag aagtggttga aataggaaaa ggtttgctta ttactagagg
    12781 cagtcttaca acttttagta tggcaaatga tattgctaag tattttacta ttttacctgc
    12841 tatgtttagt gtggttttac ctcaaatgca aattttaaat attatgcatt tggctacccc
    12901 gcaaagcgct attttatcag cacttatttt taatgctatt attatacctt tgctcatacc
    12961 tattgctatg cgtggagtta aatttaagcc tatgaaaagt gagcatttgc ttttaagaaa
    13021 tttgagtatt tatggtttag gtggtatgat agcacctttt atagggataa aaataattga
    13081 tattcctaca gcttggatac ttagaatttt aggagtgtga tatgcttaga actttgctta
    13141 gtttttttgt ggtaatgcta atattgtgta ctcttattta tccttttgct ttaaatacgg
    13201 ttgcaaaatt tatttttcct tatcaatcaa gtggaagttt agtggataaa gaaggtcgtc
    13261 cgactttgga tataagcaaa gcggtaggtt caaagctttt gggtcaagat tttaataagc
    13321 cttattttct acattcaaga gcatctgtat caaattacaa tacaagtgat acaaatgaaa
    13381 gcagtgtaag ttcaggtgga tttaattatg ctatgtcaaa tcctgcttta aaagagcgtg
    13441 tgcaaaaaga tttgcaaaaa tttttagatg agaatccgca aattacaaaa gaacaaattc
    13501 ctttggattt gttaagtgct tcgggatcag gacttgatcc tcatatcagt cttcaagcag
    13561 ccctagtgca aattcctagg ataagtcaat cttcaaaaat taccaaagaa gaactagaaa
    13621 aaatcattca agaaaatacc gagtctaaat ttttagggat ttttggggaa gaaaaggtta
    13681 atgttttagc tgttaatata gctattgcta aagccatgaa aaaagaataa acatgcaaag
    13741 acaaagtcct gaacaaattc ttaaaaaact tgaggttaaa gccaaggaag aagaaaaaaa
    13801 caaacttgca aaattaaaaa tcttcttagg ttatgctgca ggttctggaa aaacttatgc
    13861 tatgttaagt gaagctagaa ctttaaggga taatggagtt gatgttgttt taggctatat
    13921 agagcctcac gatagacctg aaacaatggc tttaacacaa ggttttgaaa gtatagctaa
    13981 tcttgaaatt ccttataaaa atatagtatt aaaagaattt gatttagacg ctacccttaa
    14041 gagaaaacct gctttggttt tagtagatga gcttgcacac actaatgcta aagggttgcg
    14101 taatgaaaag cgttttcaag atatagaaga acttctaaaa gcagggattg atgtttatac
    14161 tactttaaat atacaacatt tagaaagttt aaatgattta gtcgctaata tcagtaagat
    14221 agaagttaaa gagcgtattc ctgatcgtat ttttgatgag gctgatcagg ttgaacttgt
    14281 tgatattgaa cctaataagc ttttaaaaag aatgcaagat ggtaaaattt ataaggaaaa
    14341 acaagctaaa ctagcacttg aaaatttctt tcgtcaagaa agacttatag ctttgcgtga
    14401 gattgcctta agaagacttg cttcaagagt gaatttaaga gcaagtgaac aaaggcttat
    14461 taatgatgat ttagcttatc atactggaga gcatatttta gtttgtatta atgcttcaaa
    14521 tgcaaaggtt attcgtgcag ctgcaagact tgctttagct tttcatgcta aattgagtgc
    14581 gctttatata aaaaatccca atattaaaga agaaaaagcc ttagaagaaa atatagaact
    14641 agctaaaagt tttgatgctg aaatcattag cgtatatgat gatgatatag caagacaaat
    14701 tgcagagtat tcaagcctta gcaatgtttc taaaattgtt ttaggtaaaa ataaagataa
    14761 aaaaaagttt aaagaagaga tttttgaagc tgttgctaaa aaagcaccta atattgattt
    14821 atatcttgtt aatgaaaatc aaatttctac tcctaaaata cgaagtaaaa aaggttttga
    14881 ttttttaggt tttttaaaaa tcacaggagt tttgctttta gcaactttta tagcttttgt
    14941 atttcataaa tttaatactc agccaagtaa tatagttatg atttttattt tagcagtttt
    15001 tgcttcttct tttatttctg ataataaaat tttcgccttt tattcttctt tggtaagtgt
    15061 tttgatttat aattttttct ttttagaacc tatttttagt cttaaagttc atgatagtgg
    15121 aaatattatt acttttacaa ctatgtttat agttggattt ttaacagctg tttttactag
    15181 aagattaaaa ttgcaatcta aagaactcac taaaagagct tatagaacgg ctattttgct
    15241 tgaaaatagt gaaaagttag caagagtgaa aagcaaacaa gagctttggg aacaacttgg
    15301 aaatcaagct ttaaaattat taaatttacc tattattatt tatcctataa ataaaaacaa
    15361 tattttatcg aaacctttgt tgttttttaa cgatgataag caaatgttaa aaaattgttt
    15421 tagtgctgat gagattgcta ttgctcaatg ggttgcaaca aataaagaaa gagcaggtgt
    15481 ttgtacaaat accctgccta atgctaatgc tatgtattta cctatagaag atggggaaaa
    15541 aactaaaggg gtcataggta tagttttaaa agaaaaacgt cccttgcaag actttcagta
    15601 tgaaatttta agtgctttac ttaatgaggc aggagttaga acaagggata tatttttatt
    15661 ataaatccct taatttatta atctcatctc taattgcggc agctttttca aactcaagtg
    15721 cttttgctgc ttcaagcatt tgctttctta attctttgac aagttttgct ctttcgctag
    15781 caggcatttt ttctagtttt ttacctttgc gataaatttc gcctaaatcc tcttcatttt
    15841 tcaaactctc ttcaatatgg cgtttgactg aagttggggt aatattgtat tttttattat
    15901 aagccatttg aagtttgcgg cgttcattgg tggtatccat agcttcttgc atggattttg
    15961 tgattttttt gcaaaaaagc aaaaccttgc cattgacatt tctagctgct cttcccatgg
    16021 tttggattaa acttgtagtg cttcttaaaa agccttcctt atctgcatcc ataatggcaa
    16081 tgagtgaaac ttcaggcaaa tcaagtcctt ctctaagtaa gttaatgcca attagcatat
    16141 caaaagcacc gcttcttaaa cctcttatga tttcattgcg ttctatagca tcgatgtctg
    16201 agtgcatgta tttgactttt ataccaagct ctaaataata ccttgtaagt tcttcagcga
    16261 gttttttagt tagcacggtt actaaaaccc gttcgtttct ttgtatgact tttttagcct
    16321 catcaaataa aatttcaacc tgattatcac tatcttttaa ttctattaaa ggatcaagca
    16381 gtcctgtagg acgcatgatt tgatgaaaga tgttttcttt gctaagttca agttctaaag
    16441 gtgcaggtgt agctgaaaca aaaagaaatt gacaattttt atggataaat tcatcaaaca
    16501 ttaaaggacg attatccaag gctgaaggca aacgaaaacc ataatccact aaggtttgct
    16561 ttctgcttct atctcctgca aacatacctc taaattgcgg taaagataca tggctttcat
    16621 cgactataac aagaaatttt ctatctttaa tcgcaaaata atcaaaaagc gtataaggag
    16681 tatcgccttc tttaagccct gttaaatgcc ttgcataatt ttcaacgcct ttacacattc
    16741 ctgtgcttgt aagcatctca agatcaaatt caaccctttg tttaaggcgt tgatattcta
    16801 cgagtttatt ttcatgctca aaataagcaa ggcgttcgtt aagttctgct tttatgtctt
    16861 ttatcgcttg ttttaatctt gtttcgccca cgctaaactg gcttgtagga tagagtatga
    16921 agcgttttaa atctttacct tttttatttt ctaaaacatt gtaatgatac atagcatcaa
    16981 gctcatcgcc aaaaaattca agtcttacta cttcatcttc ataataagct ggataaatgt
    17041 ctataatatc tccttgaact ctaaaatctg cacgatcaaa aaaattatca tttcttttat
    17101 aacccatatc tacaagtttt tttaaaagtt ctttttgtga aatttgcata cctagttcaa
    17161 agattaaaac catgcctatg tattcatttg gattaccaag tccataattt gctgaaacac
    17221 tagctatgca aactacatct tcataactta aaagagaagc agtagtactc agtcttaaac
    17281 gctctaagtc ttcattggtc gagctgtctt tttctatgaa aacatcagtg cgtgggatat
    17341 aggcttcagg ttgataataa tcataataag atataaaata ttctacatga tttttagaaa
    17401 aaaagccttt aaattcacta taaagttgtg cacaaaggct tttgttgtga ctcatgataa
    17461 gagtgggtat attaagttct ttaatgacat ttgccatggt aaaggttttt ccacttcctg
    17521 taacgcctag taaggtttga tatttgttgc ctttttttat actttttact atgcctttta
    17581 tggcttcttg ttgatcggga ctgggtttaa attcgctggt aagttctaac atttttctac
    17641 tttattttta tttttgaaaa aattttaaaa gaaaatgctt taattaaaaa ttaattgaca
    17701 ataaaaacct aaatttaaat ttttttctgc tacaatatca aataatattt tccataaatt
    17761 acaaatttct taagaaggca aaaatatgtt tgatgaaaaa ataatcaata ctatgacaga
    17821 taaagtaaat gaattaattg aaaagtataa cgaagtttgc gaagccaatg aggctttaag
    17881 aaatgagctt gtaagcgtta aagcacaaaa tgaagcgaaa agtaatcaaa tcatgcgttt
    17941 agaagaagaa cttaaatctc gcaatataga aagcgaagat atttacaaga aaatagaggc
    18001 tgttcttggc agataatcta aaacaagtca tcgttaatgt caatgcaaaa gatttcattg
    18061 ttaagtgcag tgaagaattt gcaaattttt tagaagatga tatcgctttg atttctggcg
    18121 gtactaaaaa aatagaactt aaacgctttg tagatgcgtt tgttaaaaaa agttatgaaa
    18181 attatatttt agaaagagaa cttaagaaac taataaaagc aatcaatgaa gaactcccga
    18241 caaaatgaat aaagctttta ctctgcttga gcttgttttt gtgattttga ttttgggaat
    18301 tttatcaagc ttatctttat cttttatcaa tactacaaaa gatgaggtta aaattttaaa
    18361 attaaaaatg gactatgaaa tgctaagctc agctcttgct ttaatgcgta gtcaaatgag
    18421 acttaaaaat ttaaattttc cagaaatttt agataatgcg caaaacaatc aagccaaaga
    18481 aaaactcttt tattgtttaa atgattgtga ttattctttg cttgatacac ctatttattc
    18541 tgattttaaa tcttggataa aaataggtaa aaatcactat agatttgcat taaacgccaa
    18601 agagatggtt gaatttattt atgattctaa agaaggcttg ttaaagtgta taggaagttc
    18661 tagatgcaaa gatctgatat aagatattat gaacttgcaa tttgtggttt gtatttggat
    18721 aatttaactt ttcatagttt tgatgaaatc aaacctttaa cacaagtatt agtggattta
    18781 aaaactaaaa aaaaccttaa agctatcgtg cttaaagaat gtcaaaaacc tgattttaaa
    18841 accgtagaaa ttaaagaaat tacaaagtat tttttaactc ctttgcaatt tgaattggca
    18901 aattttattg tttattatta tgcttcaaaa cttggttttg ttttgggctt ttttgaaacc
    18961 agtcctaaat atgaatgtca aaaaatgttt tttaaagata cccctaagct aagcaatcaa
    19021 caacaaaatg ccttaagttt tcttcaaaaa gaaaataatt ccttactttt tgctgataca
    19081 ggtagtggca agactgaaat ttatatttct ttgataaaag agtgtttaga acagggtaag
    19141 caagctttac ttttaatgcc agaaatcgca cttactccac aaatgaaaaa gcgtttagaa
    19201 gtgtatttta aggataattt tttcctgtgg cattctaaaa tttcaaagaa aaaaaagcaa
    19261 gaatatttag agcgtttttg caagggagaa gtacttttag tagcgggtgc aagatcggct
    19321 ttgtttttgc cttttagaaa tttaggactt attgtagtag atgaagaaca tgataattct
    19381 tataaggctt ctaatcagcc ttttatcaat gcaagagatt tagcgctttt tttgggtcaa
    19441 aaaaataata ttaaagtggt tttaggttct gcaaccccat ctttgacgag tttttacaaa
    19501 caaaaaagtt ttagactaaa aggaactttt tttgagagca aaaaacattt tttatatgat
    19561 gaaaatgagc ttggtataac gcctatgctt ttaagcgaat tagaaaaaag tttaaaacat
    19621 caaaaacaag ctatagtgtt tttacctaca agggctaatt ttaggcaaat catttgcaag
    19681 gattgcggag aaacgataaa atgtcctttt tgttctatcg ccatgagtat gcataaaaag
    19741 aaaaatgttt taaaatgtca ttattgtaat tatacttctt taatagagca aaattgtcca
    19801 agttgcaaag gagaaatgtt agaagctaga aaaatgggga ctgctgaact tttagagctt
    19861 ttgcaaaatg ctttgccttt agcaaaaata gcaaaatttg atagcgatga aatcacaagc
    19921 gttaaaaagc ttaatactat tttaaaagac tttaatgaaa ataagatcga tatacttatt
    19981 ggcacctcta tgcttgctaa agggcatgat tatcatagcg tggatttgag tgtgatttta
    20041 gggcttgatg agtatttgtt gcgtcctagt tttagagcga gtgaagaaac tttagcttta
    20101 gctatgcaag ttgctggtag ggcagggcgt aaaggcgaag caagagtgct tttacaaaca
    20161 aaaaatagag ctttttttga aaggtatata gaggattatg atgctttttt aaaagatgag
    20221 ttagaaaata gaaaagatct ttatcctcca tttaaacgcc ttttaagagt tcttatagaa
    20281 gatgaagatc aaaaaaatgc acaaaaactt tgtgaaaaac ttgcctatca atttaaaaat
    20341 atcaaacaag tagaattagt aggctatgga atttgtggag ttgaaatgct gcatggaaaa
    20401 tatcgttttt atttattact tagaagtgaa aattataaag ctttagtggc aattgaaaat
    20461 tatattttgc aatttaaaaa tgtaagtgcg gatattgatc ctattgattt tatatgaaat
    20521 taatttttaa atcactcata aaatcaattt cacaccaatt gccatcaatt tccactgctt
    20581 ttgcgttgtt gtatttttca atcaaagcct gcaaaaaact tgtcatatac atattttcaa
    20641 aatttttatt atcatataaa atatctcggt caagcatttc ataaaaagca ataacttcag
    20701 aaagaaattg ataagaaaat ttaaaaagtc ctatatattg agcttctatc tcatcatagg
    20761 cattagcttt ttttccaagt tctataatat aaccatttgt catctttaat gtttcagcat
    20821 cttctaaagg atttgcaaag cgtttgttcc aaagcttacg ccaagactta tcaactacta
    20881 tagcaagttc ttctttggca tttataagct tttgcacgca atcttgaaaa taaacaatat
    20941 ccgcataaga aataatcaaa tcttgttttt cttcgatgca ttttaatata aaatctttag
    21001 cgcaaaaaaa agtatgaacc atattggttt tatcatattt tgaattaata aaaaaatgct
    21061 caatatcata tttattaaga taatttttta gcacatcgtt taaatatcca cccacaacag
    21121 ctatttcatt tatacctgct gattttaaag cttcgatttc ataatctatt atttttttat
    21181 tcttatactc aaccatacac tttggttgat cttttgttaa aggcatcagc cttgatccaa
    21241 aacctgctgc taagataatt gcattcatat tattccttga ttaaactaaa ccactctttt
    21301 aaaatttgaa tattattaag cccattttct ctttcaatat gccacattat accaaaaata
    21361 ttttcatact tatgtttaaa agcttctatg gtattatctt ttgctaagca aagttctaca
    21421 agatcttcgc ctaatttttc aatagcaaaa ttatgaaaag aattacttat aaatttttct
    21481 tttgagaaaa atacttcatg tttgcctata tgattttcac aaggacttat atggctgtta
    21541 aaataatgag ctatcatctg agctcctctg caaattccta aaagtggtat tttttctttt
    21601 aaacaaattt ctataacttg cttttcatat aaatctctct ttttagataa gacattagga
    21661 ctataaaaac ttaaatcatt accaccgctt aatatcacag cttttattag atgtttataa
    21721 tgagaaaaat ctatttcata gctaagagga agaggagtaa aatttttaaa taaatcttta
    21781 ttaaataatt ttccccaatc caaagccaaa cattctcttt cttcatgata actttcgttg
    21841 taaataagcc tttgagtaat acctataaac aaaatatttg ctcactttca cattctatat
    21901 ttattttttt agcttttaaa tatttttcaa aattttcttc tccaactcct ataacagcag
    21961 gcattccaag ttctgaggca cgaatggcca tatgtgaatt agcaccccca taacatgtaa
    22021 taagtcctgc tatatttttt gtaaataaat aatcatatcc aggatctgct gcataaatta
    22081 aaacaatctt tccttctaaa tctttatcat tttccttcgc cgtaaatgca gtaatgctct
    22141 tttgtgtaat aaaatttgga ataatactat gattataaaa agaaaaaatt tcatcggcat
    22201 tgcaaagcaa agaaggaagt tttatagctt gtgtaagttc atattctttt ttattgcgat
    22261 taatttcttc tacaaactgc tcttttggat ttatagaata aagactagaa taaagattta
    22321 aaatgctttt tatatcaaga tgagccaaat cttctttttc aataccataa tatttgccta
    22381 attcttctat ataaactata gccttagaaa gcaatctagt gaattcaaat ttaacgagct
    22441 ctctaccctc gatagcctgc tttaaaaaat caaaaaattc acaagcatta atctctagtc
    22501 catgttctct aagtaaagca tttaaagctt ttgtcttttc ttctgaaaaa acaaaagctt
    22561 tatcttgcaa ataaacttta ctatcttttt gatccacatc aaaataaagt tcaaaatctt
    22621 catcatatct tggagataaa atattataag ttcctgctct taagtgtcca aaatctttca
    22681 aaaattgatc tttgttgtga aaattaagat ggtttgtttg tttacttaaa tttttactca
    22741 ctgtattgag tgaatttaaa aaatcatctt tttcctcttt ggttataaaa tcaatctcaa
    22801 ctaaagaatt taaaagttgc attgctacaa atgcagccct agccaccccc gcaaaaggca
    22861 gagttccata acgtttacat tcttcaataa gccaataaat tttatcaatt aaagaaaaat
    22921 tagaattaat aatgccatca tatctttctt ttagcttata agctttttgt atgtctttta
    22981 aataaagccc tgatctagga ttaataatct tgtttgtaag ttctaataat gaaaattcta
    23041 atcttttgat ttcattttca ttaaaaccat gatttaaaag ttcttctaat tttttagaac
    23101 tattaaagtc ataacaagaa taaacaatat taaattcaat cttatcgtgc aattcatgat
    23161 ttttattaag cttatctaag taaaaattga caagtttttg cgcgatattt tcatctaatt
    23221 tttttggtat aaaagaatta aaagataatc ttacatccac ataaggaatg cctaaaaaag
    23281 aatggattaa aggatgggat cttaaatctc tataaccata attatctctt tgatacgccc
    23341 agatattatc cgtaatgatt tctttatata aactaaaagc taaacgctta ggtcttaacc
    23401 ctatgatttc agctggattc caatcaggca ttaccccaaa aatggcttta tctcccaaaa
    23461 ctctagatct tgattctttt aaagactcaa aacgtttata aaatctatat aaagcttctt
    23521 ttggtaaaga gtgaaataaa ttattttttt catgcataac caaaggacgc acttgcaagc
    23581 aaaaaagttc ttcctcatca tcttgaatag caaatgcaaa ttcaacatct aaaaaacaac
    23641 agttatataa aacttctaat tcttttataa gttctataat tttttgaagt ctaatatctt
    23701 taaattctaa ataatctctg taatgatagt aagtttttgc actcttacta cttccatctg
    23761 taatagagct atttgaacca ttttcatcat attgaagaca aaaataaggg gaaaaattat
    23821 ccttatcaac actaaaacca acgccacaaa gagtaatatt ttcaagcata ggttgaacta
    23881 aaatttcatc gctttttgat ggcatagaat tggcaacttc atataaagct tttaataatt
    23941 catctttaga atcagcttta atatttgcca aagaaagaaa agcacctgca ttggagtttt
    24001 tcatactatc ttcacttaaa gaagaacttc ttataatgag tctattagcc tttaaagttt
    24061 gaatgtcctg taaaacttta tcttcatttg atattaattc ttcaagcgaa gttaaaacca
    24121 aagatagaac ttttgctttt tttaattttg tttgtaaatt ttttaaattt tgtgctttgg
    24181 ttttaaattt taactccgcc atatttttcc ttagttttat atttttttag cactccaaca
    24241 acgagtggta tattttatgc taaattcctt aggaagtctt tgagaaattt tatcactaat
    24301 tttattaaaa agttcatttc cttcatcagc ctccaaatcc cagtaaggat ttttaacgct
    24361 tttccatgca ttaatataat tttcaatgct ttgatgaaaa taaaaatcct cttcaatata
    24421 aacaatatta tcaaaaagat cctttcgact ctctataatt ggtctttgat cttctcttct
    24481 tgttcccctt gtataatttg gtacaaattc tacaatagta tcttcagcta ttttttgtac
    24541 aggatcgttt aaatccctgt gattccacat acaagaaaaa tatccctctg attttaataa
    24601 gcgatgcgct tcctctaagg cttcatttct atccattaca ttaaaactac taccaaaagt
    24661 cacccaatca aattcactat tttgaagtgt tgagtttaaa cctgttgccc taacccaatc
    24721 aaccttctca cctttagttc tttctatccc gatctcacgc atcgcatcat ttggttctac
    24781 agatactacc ttacatcctc tttctaaaag cataatgctt aaatttccag ttcctgcacc
    24841 gatatcagcg actttaatat ctttttttcc aactaaacta ataagcatat ctatagtttt
    24901 tggagcataa tttggtctat agctataaaa tttagcatgc ttggtataat cccacacttg
    24961 ttctactagt ttttgcattt tatttccttt ttttcatctt tgacaagctt gatgaaaaaa
    25021 aggaggtatt ttatgctttt ctagctgtcc atgctcttat tttataagga atctctatac
    25081 tttgcatatg agaaatttta gcttctatca tctctaaaat ttccttccac cttttttcac
    25141 ctgcttgtgc ttgtatatca tttacagaat gccaagctcc aagataacgt tctttatccc
    25201 aaaactcttt atagtcacac tccataaaaa agcagtctgt gaaatctcct gttgaaacaa
    25261 gaatttcttc ccatttttta acattttgag tgccactgct tacacgagca agctctggaa
    25321 caatatgttt aatctccttt tcgatttcat caaaaaccga accctctaca atgtggcgag
    25381 gattccaaat cgcagtgaaa tacccccccc ctgtcaatat acgattaaat tctgggagag
    25441 attttttagg atctgtccaa tgaaaagaac tagccatgat gacccaatca gcttgattat
    25501 tgctcatgca ggtttcttca ccacttcctt tgtgccaaga aatatttgat aaattttgtg
    25561 taaatttttg cccttcttca cgcatattat cgtttggttc cacagcgcta atttggcatc
    25621 caaacatttc tcccaacatc ttagtaagtt ttccagtgcc agctcctact tcaacaatat
    25681 ttaaatcttt taaattttta tttttatcat tgatacaagc tacaagtttt tcaagtaaaa
    25741 acggactata agcaggtcta ttatgataat gctttgcaac ctctgtaaaa tccccttgtt
    25801 tcatattgat tcctttctct aaattaaaat gcaattatat ctttttttta ttaatttaca
    25861 aatcttttgt cggcggaaaa ataaaatttc catttggaaa aataaaactt ccataaaagt
    25921 ggaaatttta tttttctaca aaccttaaac ttaaaatata actttattaa aataaaacta
    25981 acaaaaaatt cgtttatgat gttcattttc tttaacaata gt
//
LOCUS       DAEDTT010000008        25256 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.008, whole genome shotgun sequence.
ACCESSION   DAEDTT010000008 DAEDTT010000000
VERSION     DAEDTT010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25256)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25256)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25256
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.008"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..351)
                     /locus_tag="KLC54_000260"
     CDS             complement(<1..351)
                     /locus_tag="KLC54_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HBD9176672.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLPPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYN"
     gene            complement(352..846)
                     /locus_tag="KLC54_000261"
     CDS             complement(352..846)
                     /locus_tag="KLC54_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176673.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFVYAPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILSYIGDEKIKILGWAYIVSVFIECCLAYVFF
                     KGKI"
     gene            complement(843..1439)
                     /locus_tag="KLC54_000262"
     CDS             complement(843..1439)
                     /locus_tag="KLC54_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HBD9176674.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVTCKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKDSILVSNLNKFGLDSLEDIIIDQTLGLGK"
     gene            complement(1436..1897)
                     /locus_tag="KLC54_000263"
     CDS             complement(1436..1897)
                     /locus_tag="KLC54_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HBD9176675.1"
                     /translation="MVARQIILLLVCVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(1879..2394)
                     /locus_tag="KLC54_000264"
     CDS             complement(1879..2394)
                     /locus_tag="KLC54_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176676.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNTSTIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGANNVKIISQEVEYEPKNKVLYTNTDFKALINGSIINGNTLNYDVKNKILN
                     IQGVNAWLQDK"
     gene            complement(2385..2873)
                     /locus_tag="KLC54_000265"
     CDS             complement(2385..2873)
                     /locus_tag="KLC54_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HBD9176677.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIEILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKKGGKAAVAQMIEILVEKNHLEEEWNKL
                     WL"
     gene            complement(2879..3706)
                     /locus_tag="KLC54_000266"
     CDS             complement(2879..3706)
                     /locus_tag="KLC54_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HBD9176678.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGTKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFAGAFVVRE"
     gene            complement(3666..4784)
                     /locus_tag="KLC54_000267"
     CDS             complement(3666..4784)
                     /locus_tag="KLC54_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HBD9176679.1"
                     /translation="MKKKLLCFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVTPMIRKILSQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLATFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
     gene            complement(4784..5599)
                     /locus_tag="KLC54_000268"
     CDS             complement(4784..5599)
                     /locus_tag="KLC54_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HBD9176680.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAVGVHPYEIDNYDEKILRQYLYDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEDGFYFGIGGVLTFKNAKKLVEILPKIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQFVANKMCEVLNLSRKELLEICFNNSEKLFFKGY"
     gene            complement(5590..6834)
                     /gene="cbrR"
                     /locus_tag="KLC54_000269"
     CDS             complement(5590..6834)
                     /gene="cbrR"
                     /locus_tag="KLC54_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HBD9176681.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVILAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLIQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDHCLSYMDDKKFLSTYNVLDPVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLV
                     DKASKILSQAKDNGKDRVEVCS"
     gene            complement(6938..8461)
                     /locus_tag="KLC54_000270"
     CDS             complement(6938..8461)
                     /locus_tag="KLC54_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RecN"
                     /protein_id="HBD9176682.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIELDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYSQISNE
                     LNVILEEEKKVEELKELARVQIEKISSINPKIGEYEELLIFKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDPSFFSECLNELRVICENQKMEDLDFDVETLLDRIENLS
                     YLIKRYENIENALEVLKQKKHELEHYENLSFEKKELEKKFQELKQKLEEKAQILTQTR
                     KKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISISGKDEIMLDINLAHLKNLSSGEL
                     NRLRLAFIATECKILNAGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQIFAISHL
                     PQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSDEAIEFAKTLFKN"
     gene            complement(8461..9321)
                     /locus_tag="KLC54_000271"
     CDS             complement(8461..9321)
                     /locus_tag="KLC54_000271"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HBD9176683.1"
                     /translation="MQNKIDYKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLF
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSVFLEDKQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCILCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            9412..11163
                     /gene="aspS"
                     /locus_tag="KLC54_000272"
     CDS             9412..11163
                     /gene="aspS"
                     /locus_tag="KLC54_000272"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HBD9176684.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLIAEGTIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVINVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFAKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKEDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELNLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANSIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            11160..11738
                     /locus_tag="KLC54_000273"
     CDS             11160..11738
                     /locus_tag="KLC54_000273"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HBD9176685.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVVNTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERTIEPIVADMKELIKKIQSI"
     gene            11748..12266
                     /gene="ppa"
                     /locus_tag="KLC54_000274"
     CDS             11748..12266
                     /gene="ppa"
                     /locus_tag="KLC54_000274"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HBD9176686.1"
                     /translation="MDLSKIKIGDIPNKINAVIEIPYGSSIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            12307..12804
                     /gene="msrA"
                     /locus_tag="KLC54_000275"
     CDS             12307..12804
                     /gene="msrA"
                     /locus_tag="KLC54_000275"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HBD9176687.1"
                     /translation="MKNIVLGGGCFWCVEAVFERLKGVIDTEVGYSGGNPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILTLFFKIHDPTSIDKQGGDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPNQGYCQAVIAPKLQ
                     KIQSG"
     gene            complement(12980..13819)
                     /locus_tag="KLC54_000276"
     CDS             complement(12980..13819)
                     /locus_tag="KLC54_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HBD9176688.1"
                     /translation="MQNILSSFTQEKNVCVFANTLKISIEELEKEFLKQKLKFKKINA
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
     gene            complement(13848..14231)
                     /gene="ruvX"
                     /locus_tag="KLC54_000277"
     CDS             complement(13848..14231)
                     /gene="ruvX"
                     /locus_tag="KLC54_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HBD9176689.1"
                     /translation="MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            complement(14228..15001)
                     /locus_tag="KLC54_000278"
     CDS             complement(14228..15001)
                     /locus_tag="KLC54_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HBD9176690.1"
                     /translation="MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASMAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDINQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLA"
     gene            complement(14991..16073)
                     /locus_tag="KLC54_000279"
     CDS             complement(14991..16073)
                     /locus_tag="KLC54_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HBD9176691.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVSSVKP
                     DYFIDKQEDLISSNKDHYEIGIFQENEFDNNKFVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFIPKDTNLTQDQNLTFNEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPELDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEVLKNQNIFFVDSKTI
                     GNSKANKIAKELNVPYIQRDVFLDNEDDVNYVKKQIQNAVKLAQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKSVDLVYLSEIYGK"
     gene            complement(16077..17099)
                     /gene="ilvC"
                     /locus_tag="KLC54_000280"
     CDS             complement(16077..17099)
                     /gene="ilvC"
                     /locus_tag="KLC54_000280"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HBD9176692.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     TIGLREGSVSAVKAKNAGFEVMSVSEASKTADVVMILAPDEIQADIFNIEIKPNLSEG
                     KAIAFAHGFNIHYGQIVAPKGIDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            17218..19152
                     /locus_tag="KLC54_000281"
     CDS             17218..19152
                     /locus_tag="KLC54_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HBD9176693.1"
                     /translation="MKEFLNSLSYGISSHEVNNEFKQILRELLTNHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTTLKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIDDESVDEKISLALFNKNNEFSDACIKEALANGDSVDTSMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDIQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPRPLSENICSLKPHLDRLAYCFKIALDHENKVIKEELFEGIINSKRRFN
                     YDEVDEILIQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADARKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALADELNLRAEVDKLIIKAQKKAEYSSVNAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTRVNLLESVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            19145..20110
                     /locus_tag="KLC54_000282"
     CDS             19145..20110
                     /locus_tag="KLC54_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HBD9176694.1"
                     /translation="MYRKELQILLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTRASDFLSAGSLFSEKKLLEIKTSKKIPTKDLKVLVDLCKNNADNFF
                     LLELYDESSKQSDIEKIFSPHFVRFFKANGAKEGVELLSIKAKQLGVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSELEK
                     ILDNFNEIALTNSLYNSFYRLFKIALYAKVNGKIDFKDLLGYTPPPQVGQNLSSQAFS
                     LKIEQYKEIFTLLLKSEYELKTNSKLVKKEFLISNLLKLARILKS"
     gene            20203..21246
                     /locus_tag="KLC54_000283"
     CDS             20203..21246
                     /locus_tag="KLC54_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction enzyme HsdR N-terminal
                     domain-containing protein"
                     /protein_id="HBD9176695.1"
                     /translation="MDFENQLNAIVETIAERKTLVNTEEATKMTFIMPFLKTLGYDVF
                     NPSIVVPEYTADIGTKKGEKVDYAIFKDSKPFILIEAKNHTENLDNHNNQLVRYFNTN
                     PSIKFAILTNGIEYRFFTDIEQQNLMDKIPFLVVNLEKLKPRDIKDLKRFICTDLNLD
                     EILSIAMEKKYYRSIQEIFKSEIENPSDEFTSFFAKQMTEKRMTSAVLEEFKNYIKKS
                     FKEIINDLAYEKITSIKNNLQNINDDENDEQIDESKDIVTTEEELQGFYIVKSILASV
                     SANLEDVSYKDTLSYFSILYQGKVTKWICRLYFNTSKKSISFPDGASYNIEKLEDIYQ
                     YKADIIKAFESRK"
     gene            complement(21268..21612)
                     /gene="hypA"
                     /locus_tag="KLC54_000284"
     CDS             complement(21268..21612)
                     /gene="hypA"
                     /locus_tag="KLC54_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HBD9176696.1"
                     /translation="MHELSIVESLIELCEENALNNKAYNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQVSILEENVFKCPKCQSIEYKITQ
                     GEDLHLMRLVME"
     gene            complement(21612..22586)
                     /gene="hypE"
                     /locus_tag="KLC54_000285"
     CDS             complement(21612..22586)
                     /gene="hypE"
                     /locus_tag="KLC54_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HBD9176697.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEADVKSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDELKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            complement(22583..23674)
                     /gene="hypD"
                     /locus_tag="KLC54_000286"
     CDS             complement(22583..23674)
                     /gene="hypD"
                     /locus_tag="KLC54_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HBD9176698.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCTVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNV"
     gene            complement(23658..23939)
                     /locus_tag="KLC54_000287"
     CDS             complement(23658..23939)
                     /locus_tag="KLC54_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HBD9176699.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            complement(23939..24682)
                     /gene="hypB"
                     /locus_tag="KLC54_000288"
     CDS             complement(23939..24682)
                     /gene="hypB"
                     /locus_tag="KLC54_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HBD9176700.1"
                     /translation="MCKDCGCSINSSHTHGHHHDHHHENPSLKEGKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSVTEGSDKPQKYPVMFKKADIVLITKVDLAHHFDFDLKEATKLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            complement(24760..>25256)
                     /locus_tag="KLC54_000289"
     CDS             complement(24760..>25256)
                     /locus_tag="KLC54_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HBD9176701.1"
                     /translation="FLAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKS
                     SYEAQVGLMCEAFYDKNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITGMFNALAN
                     FIIDFSKDYDLKVLLSGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFL
                     NLEK"
BASE COUNT         8825 a         4340 c         3283 g         8808 t
ORIGIN      
        1 attatagtaa gaatcatttc tcttataaat ttctgctaat ttactagcat ttaaatcggg
       61 aaataaattt gtaagttcag ataattcttt atctaaaatt cctttatttg actttttaat
      121 actcaaataa ggtttaatag aaatactaaa acccaaatca ttaatagcca ataaagttcc
      181 atttctatct gtaatttgac ccctaacagg tggtaaaaat tcagttttta tggcattttg
      241 tttagcaagc tcttcataat atacatttga ttttatactc aaataataca cacgacttaa
      301 taaaaatata aaaaacaata gtataaatcc aacaactaaa cgcattctca tttaaatttt
      361 acctttaaaa aacacataag ctaaacaaca ttctataaaa actgaaacaa tatacgccca
      421 tcctaaaatt ttaatttttt catctccaat ataagacaat atcatatcca aaaacaaaat
      481 aatgccgtaa gcacaaagca caaaaacaac agggataaat ttaccaattt ttaaatttgt
      541 cttaatccaa tctgcacaaa gataataaaa aataaaaaat gccaaccaag atgaaaaaat
      601 aaaaaaatta taagttatat cagtaaaaaa taaaaaaaat aaagaaaaat accatctaaa
      661 atcaagcttt gaaaaagttc tttctctctc ttctagtaag caaaacatat aacagaaaaa
      721 aatcccataa agtaacggag catatacaaa agtcgaacca agaatctgat agattagaaa
      781 aaaaaatcct aaaaagacat aagctccatt aaattttgct ttataagcac ttaaatttct
      841 tctcatttac caagacctaa agtttgatcg ataataatat cttctaaaga atcaaggcca
      901 aatttattca aatttgaaac taaaatagag tctttaaatt cattttttaa cttagctttt
      961 tcactttgat ttaatttatc gcatttggta aaaactttta aaattttttg atcaggtcgt
     1021 aaaaatcttt tcaaatagtc atttaaattt acatcgatct ctaaatgagt atgtcttgag
     1081 tcgattaaat gtataaataa ctttatcgag gttcttaatt ttaaaaattc atctaagttt
     1141 tgattccata tttcttttaa atttttagaa acctttgcat aaccaaaccc tggcaaatcg
     1201 ataaaattga tattaaattt ttcttcattt cttttacaag ttacttcgaa aaaatttata
     1261 agctgagttt ttccaggagt tgccgaactt ttggctaaat ttttttgttt acacaaagaa
     1321 ttgattaaag aactttttcc gacattggaa cgccccaaaa atgctacttc actaaaattt
     1381 gagctcaaat tctcatcaaa tttcactaaa gaagtgataa atttagcact aattatcatt
     1441 tgtctttaag atcaaataca aaacgagcag gtttttgatc cttgctctct actcgataaa
     1501 tattagcttt tctatcgact attattttat caccaaaaag tttttgattg cttccaagct
     1561 catttatata agcatggcca ttaatctcgt aagtatcttt aataacatta taaataaatt
     1621 tatctccact acctttataa gttttacctt ttaaaacaat cttaaaccta gcgttttgca
     1681 ttgcttcata acgaataggt ttgcgatttt tatccgtata aataatcaat ttttcagaat
     1741 ttaaaatatc atcaccccta attacttcta catttccact aagaatactt tcacccttat
     1801 tttcatctga ataaaaattt aaagctttta cttcaatttg agttgcccaa gttacactta
     1861 cacaaactaa caataaaatt atttgtcttg caaccacgcg tttactcctt ggatatttaa
     1921 aattttgttt tttacatcat agtttaaagt atttccgtta ataatacttc cattaattag
     1981 agctttaaaa tcagtatttg tatatagaac tttattctta ggttcgtatt ctacctcttg
     2041 ggaaataatt ttgacattat tagcacctat ataagtaaca tttccttcaa ataaaacctt
     2101 gctcatatct ttattaaaaa attctaaacg atttgcacta agattaaaat ctaaatttaa
     2161 agtaataaaa tcattaaatt catctctatc tgcatatctc acccaagaat ttgccttata
     2221 atatgcctta attgtactag tattactctc ataagctttc aaatttttag cctcaatatt
     2281 tttaaaattt aaagcattag tttgcaaatt caaagaatat ggatcttgca aacttaaaat
     2341 cgtaaaagta attgtaaaaa gagcaattaa aattccaaaa atttttatag ccaaagctta
     2401 ttccattctt cttctagatg atttttttct actaaaattt ctatcatctg tgctacagca
     2461 gccttaccac cttttttgct aagcactatg tctacattta aatctttatg accatctttt
     2521 ggcttaaaac taagtcctac actttcaagc aaagccttat cgttaaaata atccccaata
     2581 gccgcacact gagaaaaatc taaattaagt ttttgtaaaa tttcttttgc acaagctaac
     2641 ttatccttga tgccttgata taaaatttct atttttaaat ctttagctct tttttcaaca
     2701 caaggacaat ttctacctgt aataatagca atttttttac caagctttag ccaagcctcg
     2761 atagccgctc catcttttac atcaaattct ttaataaatt ctccattaga agtataaata
     2821 atcttcccat cagttaaaca gccatctaca tccaaaaaaa tcaattctgt cataatttct
     2881 actctcttac aacaaatgca cctgcaaatg caccacttgc agcaaaatct cttgcttcat
     2941 cttcacttct aaagcctgtt aagaaaacgc gatttaaccc atccactgag cttgtgcgta
     3001 tagtagagct ataagttcta taagttttat atcttgctgc tatcgtttgt gctccagctg
     3061 ggtttttaaa ggctccaatt tgaaccatga aatttccacc ttcataaatt tgtccattat
     3121 ttgcaatctc tccactattt ccatagttta cattagaatg tacaatatta ttacccgaat
     3181 tacttgatcc aaaccctata acctcaagcc ttactggagc tgttcctgaa gcaatcatat
     3241 caatttgact agcagctcct tttgataaat ctataatacg attatttaca aaaggacctc
     3301 tatcattcac acgaacggta acttgacgat tgttatttag attggttact tttaagatgg
     3361 tattcatagg taaagtttta tgagccgcgg ttaaagcatt ttgattatag gtttcgccat
     3421 tagaggtttt cttgccgtga aagcctggcc cataccaact cgcaatacca tcagcagttt
     3481 cgcctactgc tacaacagta ggataataag ttttaccgtt gatagtataa ggcttcattg
     3541 ttcctttagt ccctgaagaa ctaggactgc ttttaaaatc atttgaagga taatacactt
     3601 gagcattatc caagctagaa aaaaaactag tgcctaaaca accactaaaa aataaagccc
     3661 ctagactaac ggctgacaac tttagtgtaa ttgtttttat ttgcattttt attctccttg
     3721 attggtataa ttaatttttg attaatgcta agatgatttt ttgctatttt attgaattct
     3781 cgaatttcat caacacttat attataattt tttgctattt tatataaaga gtcaccagac
     3841 ttaacggtat aagttcttgt cataggtata gttgtatcaa cctttgcaag tttttctgct
     3901 ttaaaatttt tatcaaaaaa tgctacttta ttaagtggta tatacatata atacccttta
     3961 ccaggaggcg taaaattatg tttaaattgt ggattatatt tcttaaaagt tgcaagatcc
     4021 atatttaaat ttttagctat ttcttttaaa gatgcagaag aaggcacatc aacttttgca
     4081 aattcattgc ttaaagcata attcattaaa gacgcatctt tatctagtaa aaaatcccta
     4141 tcattagcta aaaaagcaag cgttaaaatc tttcttataa aatttctagt ttctaaagaa
     4201 agatatttct tatcagggtt caataaaaca cttaaatcat cacttcctgc ttgcttgata
     4261 gcttgtctta gcttgccatt tccgcaatta taagctaaaa gtgccaaata ccatttgcca
     4321 aattcttctt ttaactcttt taaataattt gtagcggcat aagttgactt gaccggatca
     4381 cgcctttcat caacataagc atcgattctt aaacccaaat ttctagctgt tggttgcata
     4441 aattgccaaa cccctacagc cttggcatta gaaacactat gagttttcaa gcctgattca
     4501 accatagcta gatacaaaat ctcatcagga acttcctgct gggataaaat ttttcttatc
     4561 ataggagtaa cttttgaaaa attttgcata ctatctatta aagtttgagc atgttttgat
     4621 tttatatctt gttgagtttg cacaaaaatc aaatcactaa taaaacttgg attaatatct
     4681 aaatttctta aaacattcat ttgtctttca taaaattcag gagtattaat ttgtgcaaaa
     4741 agaaaattaa aacatattaa aaaacacaat aatttttttt tcattaataa cctttaaaaa
     4801 ataatttttc agaattgtta aaacaaattt ctagaagctc ttttcttgat aaattcaata
     4861 cttcacacat tttgtttgct acaaattgag ttaacaaagg ttcatttctt ttaccgcgat
     4921 aaggctctgg agtaagatat ggagcatcag tttcaagtag tagtctatct tttggaattt
     4981 taggtaaaat ttcaactaat ttcttagcat ttttaaaagt taaaactccc ccaataccaa
     5041 aataaaatcc atcttcaaaa agagttagca aatgttcgct tgcattaaag cagtgtaaaa
     5101 ctcctcctac aagatcctta gaatacccat gtaaaatctc ataagtatca tgatttgctt
     5161 ctcttgagtg aatgataaca ggttttttaa attcaatagc aagttcaagc tgtgcgataa
     5221 aaatcttttt ttgattttct ttttcttttt gaatttcttc agcaagatca cttttaaaac
     5281 ggaaataatc aagcccacat tcacctacag ctacacactt ttcatcgtat aaatactgcc
     5341 ttaaaatttt ctcatcataa ttatcaattt cataaggatg cacccctact gcaaaaaaaa
     5401 tatttttata tttatgagca attgtagctg catagggcaa atcttttata tcagcaccag
     5461 gtatgatgat tttctctata ccatttttaa aagcacgatt taaagtttca tctaaatcat
     5521 ctttaaatgc ttcactgtct agatggcaat gtgtatcaac aatccttaaa ccatcttgaa
     5581 aatcaagatt taagaacata cttcaactct atccttgcca ttatcttttg cttgagacaa
     5641 tattttactt gctttatcaa ccaaagaatc aatcttatct ccactttttc caaaaaccac
     5701 gcctatagaa gctgtaaaaa agacttcatc taaattaact aaaacaccag ccttttttat
     5761 atttactcgt atacgagaaa agattttaat cgctctttct tgggatatat ttttaagtaa
     5821 aatacaaatt ttttctgcac tatatctacc tacaagatct cttcctttag tttcattgac
     5881 tatttcatta gcacagattt taattacttc atcaccaact tcacgaccgt attcatcgtt
     5941 aatcatttga agattatcta tatctaagaa agcaaaagca aattcctcgt cttttgttgc
     6001 tatttcgtta aaataatcat ctattccatc gattaaagca ttataatttt taaccccaga
     6061 tacaggatct aaaacattat aagtgcttaa aaatttttta tcatccatgt aagataaaca
     6121 atgatctaag cgacaattaa aactttcttt gcttaaaggc ttaaacaaat actcattaac
     6181 tccattttta aaagaattcg cttcaaatga atcattatga tcccccaaaa gaatcacacc
     6241 taattcatca tcactaaaac gttctcttac ttgaatcaaa agctcaaaac cgctaattac
     6301 tggcatattg acatctgcta taataagctt aacatcatta ttatcattta aataactcat
     6361 tgcttcttca ccatgagctg cagctaaaac attaaattgt ctttgagtaa gtattttttt
     6421 aatttcatta cgttcaggta gcttgctcat agctaaaatc actttagttt ttgcatattg
     6481 attaagtttt acaatagaac taataatctc atcaatgcaa gtttcacttt ctttaaaaat
     6541 ataatctaat atatctttat ccataaattt ttctttagta gccttatcac cactagctgt
     6601 aagaacaata gcaggaattt tcttttctat aacataatcc acaacttcac catttggggc
     6661 atctggcaaa cataaatcca caaaagctaa aaaataatca ttattcatta attccttagc
     6721 ttcggcgaaa ccaaaagcaa tatctacctc ataatctaaa gtcatttgaa tttttttagc
     6781 taaaagtttg ccgagcattt tattgtcatc aataattaaa attttcttat tcatagtgtg
     6841 taaaatacct ttatatctaa aatttttaat atatttgttt caaaagaaag gaaattttat
     6901 agttatatat tctaacatag taaaataaaa aatccgctta attcttaaac aaggtcttag
     6961 caaattcgat tgcttcatca ctaacaagct ctccacttac catcctagca agctctttaa
     7021 ttctttcttc ttgatcaagc ttttttacct tgctttcttc gccatttttt tcaactaaaa
     7081 aatgattatg cgccttagag gaaagttgag gcaaatgaga aatagcaaaa atttgataaa
     7141 acttagaaag ctcctctaaa accttggcta tactcatagc ctcttttccg cttaaatttg
     7201 catcgatttc atctaaaaat aatatccctt tgcctgcatt taaaatttta cattctgtgg
     7261 ctataaaagc aagtcttaag cgatttaatt cacccgaact taaatttttt aaatgagcta
     7321 aattaatatc tagcattatc tcatctttgc ctgaaattga aattttttca ttttctttaa
     7381 gcgtcaaact tgcgtctttc atataaagat ctttaagata attatttaaa catttttcta
     7441 attttttaag gtttttcttt cttgtttgag ttaaaatttg tgctttttct tctaattttt
     7501 gttttaattc ttgaaatttt ttttcaagtt cttttttttc aaaacttaaa ttttcataat
     7561 gctctagttc atgttttttt tgttttaaaa cctctaaagc attttctatg ttttcataac
     7621 gcttgatgag ataggacaaa ttttcaatgc gatctaaaag cgtctccaca tcaaaatcca
     7681 aatcttccat tttttgattt tcgcaaatca cacgcaattc atttaaacat tcactaaaaa
     7741 aactcggatc aacttcgctt aaatttaaag cttcgataac aactttttca agctcaaaaa
     7801 tacgctctgc cttgctccaa gcttcttcta atttatcttt tttagaaagc ttttttttaa
     7861 atattaaaag ctcttcatac tcacctattt taggattaat gcttgaaatt ttttcaattt
     7921 gcactctagc tagttctttt aattcttcta cttttttttc ttcttctaaa attacattaa
     7981 gctcattaga aatttgacta taagcattaa aatctttttt aaaatcttct aaaaaagaaa
     8041 caaaatttgt attttcttgc atttccaagg catctaagag atttaaaaat ttttcatttc
     8101 caaattcgtt attttccttt gcacttaaat acttaataaa agttttactt aaattttgca
     8161 aacttttttt cgctatgctt tgattgttaa taaaatattt tgtgtttttt tcttttaaaa
     8221 gcttaaaaac attctcctct tcactttcta tgccaaaact ttctaaatct aacttatcat
     8281 ctagttctat ttcgacaatt ttagcctcac tttcactcaa agaaaatgcg gataaaattc
     8341 ctttaaacaa gactgatttt ccagctccac ttaggcctgt aaaaacggta agccctttag
     8401 aaatttcaag ctcagccttt ttaaaaccaa gattttcttt cataaaaatt ctatttatca
     8461 tcaatttccc cagtgtaatt tttcttttaa aatttgaaaa taatccctat tttttgggtg
     8521 aattaaagcc acatttttat cacttaaacc cacttttata cttttaaaat cattcatttt
     8581 ataattttct tgcccatcaa tacaaagtat acaatccttt gccataatct ctatttcaaa
     8641 accttttggc aaaacaatag ggcgttgtgt taaagaatga gaacaaacag gagttaagat
     8701 aaaagcttga gctaaagtat aaactatggg cccatttgca cttaaattat aagctgttga
     8761 acccgcagga gttgcaacaa taagcccatc tccaaaatat tcattaaatt tcttttcttt
     8821 tctaaaaact tctatatgag ccatagaagc ttgattgttt ttactgataa ccacatcatt
     8881 aaaagccaat ttttctaaga tttttccttg cttatcttct aaaaaaacac ttaacaaata
     8941 aggcttttct attctaaatt ctccttgaaa aaaagcttga aaaaaatttt cagcttcatc
     9001 aactttaaaa tctgttaaaa aacctaaatg tccagcatga attcctaaaa ctgctttatc
     9061 atattcacaa gctttacgac ataaagaaat caaagttcca tctccaccta aagaaataac
     9121 aaaatcagat attttaaaca aatcatccaa tccatacttt ggcaaatcta aaatttcaga
     9181 actttcttta aacaatacaa gctcaacttt atatatagat aaaatcgatt gaagttttaa
     9241 aatttcctta tctaaactca cattgggtcg tgtaacaagt ccgatttttt taatattttt
     9301 ataatctatt ttattttgca taaaaaatta tatcaaatct tagcaaagca aaagaataaa
     9361 aatactataa ttttgctcat tatcttaaaa aatctttttc aaggaataaa tttgcgaagt
     9421 cattataata cagacttggg aatttcccat gttggtcaaa gcgttaaact ttgcggttgg
     9481 gtaaatagct accgcgatca tggtggagtt atttttatag atttaagaga tagaagtggt
     9541 attatccaac ttgtttgcga tccaaatgat agcaaagaag ctcatgaaat cgcttccaat
     9601 gcaagaaatg aatttgtact tattgcagaa ggtactattc gtccgcgtgg cgaaggactt
     9661 gtaaatccta aattaaaaac aggagaaatc gaagtagttg tttctaaact taccatagaa
     9721 aatgaaagtg ccgtacctcc ttttgctatc gctgatgaaa gtgtaaatga agaattacgc
     9781 ttaaaatatc gctttttaga tttaagaaat cctaaacttt atgaaaattt tgccttgcgt
     9841 tctaaagctt gtatagcagc tagaaattct ttggcaaata tgggattttt agaagttgaa
     9901 acccctattc ttaccaaagc tactcccgaa ggtgcaagag attatctcgt gccttctcgt
     9961 gtgcatcagg gtgaatttta tgctcttcca caaagccctc agcttttcaa acaactttta
    10021 atgtgtagcg gttttgatcg ttattttcaa atcgcaaaat gttttagaga tgaagattta
    10081 agagctgatc gccaacctga attcacacaa attgatgttg aaatgagttt ttgcgaacaa
    10141 aaagatgtaa tcaatgtagc tgaaactttt ttaaaagata ttttcaaagc ttgcggcaaa
    10201 gaaattcaaa ccccttttag acaaatgcaa tacaaagacg ctatggagaa ttatggctct
    10261 gataagccgg atttaagatt tgatcttaaa tttattgatg tgattgatat ttttgctaag
    10321 tcaaataatg aaatttttgc aaatattgcc aaagatacaa agaaaaatcg catcaaagcc
    10381 atacgcgttc caaaaggcga tactattttt tcaaaaagac aaatgcaaag atttgaagaa
    10441 tttgtgcgta aatttggtgc ccaaggctta gcttttatac aagttaaaga agatgggctt
    10501 aaaggtccgc tttgcaaatt ctttagcgaa gaagatttaa atgagctaag caaacgctgt
    10561 gagcttgaag taggagatgt ggtatttttc ggtgcaggag ctaaaaaaac cgtgcttgat
    10621 tatatgggaa gatttagaat tttcttagcc aacgagttaa atcttataga tccaaatgcc
    10681 ttagaattct tatgggttgt tgattttcct atgtttgaac aaaatgatga tggaagttat
    10741 tctgcgatgc accatccttt taccatgcca aaaaatatcg atgagactga tttagaagaa
    10801 atttcatcta ttgcttatga tgtagtttta aatggcgttg agctaggtgg aggtagtata
    10861 agaatccata aaaacgatat tcaacaaaaa gtatttaaac ttttaaatat cgatgaagaa
    10921 caacaaaaag aaaaatttgg cttcttgctt gatgctttaa gttttggtgc tccaccacat
    10981 ggaggtatcg ctataggact tgatagactc atcatgctag ttacaggagc aaacagtata
    11041 agagaggtta tagcctttcc aaaaacccaa agagcgcaat gcttaatgac agatgcacca
    11101 tcgcctgcta gcaatgaagc aatgagagaa ttaggaatca aattaaggga gaatataaaa
    11161 tgaaagaatt gtttttaatc ataggtgcac caggtagtgg aaaaactacc gatgctagtt
    11221 taatcgcaca agcagatgcg acaaatatca cacactattc aacaggagat cttttaagag
    11281 ctgaagtagc aagcgggagt gagcttggaa aaactataga tagttttata tccaaaggca
    11341 atcttgttcc tttagatgtt gttgtaaata ctatagtttg tgctctaaaa gctgctccaa
    11401 ctaaaactat tatcatcgat ggttatccaa gaagtgtaga gcaaatgatg gaatttgata
    11461 aggttttaag tgagcaaaat gaaatttgtc ttaaaggtgt catagaagta agagtaagcg
    11521 aagaagttgc caaagaaaga gttttaggca gaaatcgtgg tgcagatgat aatgaagaag
    11581 tgttttataa tagaatgaaa gtttatacag aacctttaaa tgaaatttta gatttttatc
    11641 aaaagaaaaa acttcatttt attatcgatg gggaacgcac tatcgaacct atcgttgcag
    11701 acatgaaaga actgattaaa aaaattcaaa gtatataagg agaaaaaatg gatttaagca
    11761 aaatcaaaat cggagatatt ccaaataaaa tcaatgccgt aatcgaaatt ccatacggct
    11821 caagcatcaa atacgaaatc gataaagata gtggtgctat catggtagat cgcgttatgg
    11881 ctagtgcgat gttttaccca gcaaactatg gttttattgc caatactttg gctgatgatg
    11941 gtgatcctgt ggatatttta gtgcttaatg aatatcctat ccaagctgga gccgtgattc
    12001 cttgtcgctt aattggtgtt ttaatcatgg aagatgaaag cggaatggat gaaaaacttc
    12061 ttgcagttcc aaattcaaaa atagatgcaa gatatgacaa tataaaaact tacacggatt
    12121 taccacaagc aactttaaat aaaatcaaaa atttctttga aacttataaa attttagagc
    12181 caaacaaatg ggttaaagta caagatttta aagatgaaaa agctgcaatt gaaattttag
    12241 aaaaagcaat caaaaactac aaataatctt agcccttcaa agggctaaac tcaaggaaaa
    12301 ctcgcaatga aaaatatcgt tttaggtggt ggttgttttt ggtgtgttga agccgtattt
    12361 gaacgcctaa aaggtgtaat cgatactgaa gttggatata gcggaggaaa tccaaatcct
    12421 agctatgaaa gcgtgtgtaa tggtgatggt aacatagaag ttgtcaaaat aaattacgat
    12481 gaaaaacaaa tctctcttct tgaaatctta acactctttt ttaaaattca tgatccaaca
    12541 agtatagata aacaaggtgg agatattggt atacaatatc gctcaataat cttttacgaa
    12601 aatgaagaag ataaaatttt agctcaaaat ttcatcgaag aacagcaaaa aatatttagc
    12661 aaaaaaatag ttactaaaat ttcaagattg caaacttact acaaagctga aaactatcat
    12721 caacattatt ttataaataa tcccaatcaa ggatattgtc aagctgtaat agctccaaaa
    12781 ctgcaaaaaa tacaatcagg ctaatttcat ctttttaagg ttaaaaaaaa ttcaacttta
    12841 ttcacagcct tttcacgctg tgattttctt ttcaaagtac ttaaaaatag aactttaagc
    12901 tttaaaataa agaaaaaatt atttattgtt ttttaagttt ttttatgaat ttgtatttaa
    12961 atgtgaataa ttttatcaat taacataatt tcctaagttt agctatgaaa aatccatcat
    13021 agtctaagct tggtaaaatc cgtctgcatt ttgaaatttc agcaaattct tcactttgcc
    13081 ctgctttagc ctcaacattt tccaaatcaa tatctaaaag ctctaattta aactcacttt
    13141 ttaaagcatt ctctatcact tcttcatttt cttctttggt aaaggtgcaa gtactatata
    13201 caagctctcc acctattttt aatgccttta aagcagaatg tagaagtttt ttttgagttt
    13261 ttgcaatatt tttgatttct ttataacttt tttccaaatc aaaacctatt ttagcaaaag
    13321 tcgaacaagg tgcatcaagt aagattttat caaattttaa aggacataaa ttgcctatat
    13381 ttttaccatc tttcataaaa actttagcat tcacgccgta atttttaaga tttttttgca
    13441 aaataaaaaa tctatcccta ctcatctcat tgcaagctaa ataacctgta ttttgcataa
    13501 aatttgcaag attgatactt ttaccacccg gagctgcaca catatcaaga accctttgcc
    13561 ctgctttgac ttctaaattt aaagcacaca aataagaaga ataattttgt atataaaagt
    13621 gcgcctcatt aaaagctttc atagaactta agatagcctt atctttggca tcaaacaaat
    13681 aacaataagc attgatcttt ttaaatttta atttttgttt taaaaattct ttttctaatt
    13741 cttcaatgct aatttttaaa gtatttgcaa atacacaaac atttttttct tgagtaaaag
    13801 aagataaaat attttgcatt tcatctttgg tataaagttt ttctattcta gagagcaaaa
    13861 taatccttta tcatgataaa agcggataaa gagtctaatt taccatcttt tttgcgtgta
    13921 ttggctacgc cgtatcctaa agcttctttg cttgttccgc tttcatctac aaagcaaatt
    13981 tctttatcaa attcaagcaa agaaacaaaa tgcttaatgc gtcttgtcat ttcttcttca
    14041 cttgatccac ccttaggaat gccaacaatg agtaaagaaa tctcatgtat tttaagtaaa
    14101 tttttaattt cattagcggc ttgattgcga ttttttctta aaactgcatc taaaggcaaa
    14161 gcgatctttt tatctataca aagcgctaca cctatgcgtt ttaaacctac atctaaagcc
    14221 aaagctctca tgctaaaacc cttataaaaa gcccttctat ggaaattttt ccctcaagtt
    14281 catattcata aactttttgt ccataaattt ttaaagcctc atcaacactc acaccttttt
    14341 tacaaaactc taaaaactca tcttgattta tatctatact tgcaaactca cttacaaatt
    14401 ctttgaaatc acaaatcaat tttgctttat tttcctttaa aagcaaatta gtccctgtac
    14461 tttctcctag tctttgcggt aaaacatata aaggtttatt gagttctaaa gcaagttttg
    14521 cactttgcat agaaccactt tttatatctg cttgtgcaac tacaacggcc ttacttaaag
    14581 caataaccaa acgatttctt agtaaaaagt cataattttt tggcaaataa tcatcttcgt
    14641 attcgcttaa agccaaagca ttttcataaa tttgtttaat gattttttca ttagttcttg
    14701 gataaatttg atccaaacca ttagcaaaaa tacctatagt atttggcata gccgccatac
    14761 ttgcggtgat atccacaccc aaagcaccgc cacttaccac acaaagatga gcatttttaa
    14821 gcatactcgc taaggaaaaa acacaatttt tcgtataaac actcatacgc cttgaaccta
    14881 taatagcaat tttatcttgt tttaataaag ataaatttcc tttatagtgt aattttttag
    14941 gaggcttttt taaatcttta aaaagttcta aaaattcatc aggcaaaatt tcacttgcca
    15001 taaatttcac tcaaatacac aagatcaacg ctttttaaca aatctttact ttgctctaaa
    15061 gctttaaaag tatttttcct aggatgtcct atggctataa caaaaccttt tttttgtgca
    15121 agttttactg cattttgaat ttgtttttta acataattaa catcatcttc attatccaaa
    15181 aacacatctc tttgtatata aggaacattt aactctttgg ctattttatt tgctttagaa
    15241 tttcctatag ttttagaatc tacaaaaaat atattttgat tttttaaaac ctcataaagc
    15301 tttctcatag cttcttcatt gcttgtaaat aaacttcccg tgtgattatt gatgtatctt
    15361 aaatccttaa aatctttttt aatttgcttg atttttttaa aaattctttc tttgctatca
    15421 tttggattta aagtatcaag ctcaggttta ttgtaattaa tcgctgctaa aggtaaatgc
    15481 accatataaa aatcaaattt taaagcaagt tttggcgttt cgctatggtt tttatctggc
    15541 ggaaaaaaag aaggatttaa ctttaaattt aaagctttta aacctctaac ctgacttgca
    15601 tttgccatat catcgataat aatagcaagt tttggttttt tagaaatttt atttaaatga
    15661 atatcttcat taaaagttaa attttgatct tgggttaaat ttgtatcttt tggaataaaa
    15721 ttttgttcca aactctgatt ttgctctaaa cttaaattct gctccacact gcttaaattt
    15781 tgctcattta aacttgtatt taaatcatcg atttcttgaa ttttttgctc taaaatactt
    15841 acaaatttat tattatcaaa ctcattctct tgaaaaatac caatttcata atgatcttta
    15901 tttgatgaaa ttaaatcttc ttgtttatca ataaaataat ccggcttaac agaagaaaca
    15961 tcttgggaat tttgatattt tactaaaatt cccaaagcta aagctataca aagtaaaaaa
    16021 agtatagcta tgattaaata acgctgaatt tgaactaatt ttttctttga caatgtttag
    16081 ttcttatctt tatctactaa ttttttagca ctgatccaag gcatcatcgc acgcaaattg
    16141 cgccctgttt tttctatcaa agaatcattc atatttttgc gttctgcatg cattctagca
    16201 aaacctgcac ggcgttctaa gataaaatct tttgcaaaaa caccattttg tatatctttt
    16261 aaaacacctt tcatcgcttt tttagtctct tcagtaataa tctttggccc tgtaatataa
    16321 tcgccgtatt ctgcagtatt tgagatagaa taacgcatat ctgcaatacc accttgataa
    16381 atcaaatcca caatgagttt catttcatgc aaacactcaa aataagccat ttcaggttca
    16441 taacctgctt caaccaaagt ctcaaaacct gcttgaatca aagcactaag cccaccacaa
    16501 agcacggctt gttcaccaaa aagatctgtt tctgtttcgg ctttaaaggt tgtttctata
    16561 atacctgtgc gtccgccccc aatcgcactt gcataactta aggctaaatt tttagcattt
    16621 ttactttcat cttgatggat ggctattaaa caaggagttc cacctcctaa agtaaattca
    16681 tttcttactg tgtgtcctgg tgctttaggt gctatcatga taacatctat accttttgga
    16741 gcaacaattt gaccatagtg gatattaaaa ccgtgcgcaa aagctatagc cttgccttca
    16801 cttaaatttg gttttatttc gatattgaaa atatctgctt gaatttcatc aggagctaaa
    16861 atcataacca catctgctgt cttagaagcc tcgcttacac tcattacttc aaaaccagca
    16921 ttttttgctt taacagcact tacactacct tcacgaagtc cgatagttac atttacgcca
    16981 ttatctctta aattcatcgc atgagcgtgc ccttgagagc caaagcctat aattgctact
    17041 ttttttgatt tgattaaatt taaatcacaa tctttatcat aatatactgt aatagccata
    17101 ttcactcctt aaaaattcaa aaattaaagg tattattata gcaattaaag tataaaattc
    17161 atattttttt tataaacttt atgtaagaat tttacaaaaa atcataaagt atcaaaagtg
    17221 aaagaatttt taaacagtct tagttatggc attagctctc acgaagtaaa caatgaattt
    17281 aaacaaattt taagagaact tttaaccaat catatcatta aagaacataa aaacaaatac
    17341 tatcttaaca atggttttgc ctttggagta cttgatattt cgagtaaagg cacaggtttt
    17401 ttacaatgct ttgatgaaag tttcaaaaaa gatcttttga tagaaaacaa aaacctaaaa
    17461 ggcgcaaact ataaagatat agttgcagta aaacttctac ctttaaagaa aaaacgcccc
    17521 agtgcaaagg tgattttggt tctaaaaaga gccaatgaaa cctctttagt gatcaccaaa
    17581 aggtatggcg aagccgtgct tggaatgaat atcaaaacag gattaagtac caccttaaaa
    17641 gcttctcaaa aatccttaaa agcactacct ttagggacaa ttttaaaaat agaaaatgaa
    17701 aataacaata tcatagaagt tttaggacat atcgatgatg aaagcgtaga tgaaaaaatc
    17761 tccttagctc tttttaataa aaataacgaa tttagcgacg cttgtatcaa agaagctcta
    17821 gcaaatggtg atagcgttga tacgagtatg tatgaaaatc gcatggattt aagagccttg
    17881 cctttttgca ccatagatcc tatacatgca aaagattttg atgatgcgat ttattttgac
    17941 atccaaaaac gagaaattta tgtagctatt gctgatgtta gcgaatatgt ttatgcttat
    18001 agtgctatag ataaagaagc aagaaatcgt ggattttcta tttattttcc acatattgct
    18061 atacctatgc taccgcgtcc tttaagtgaa aatatctgtt ctttaaaacc tcatttagat
    18121 cgcttagcgt attgttttaa aatcgcactc gatcatgaaa ataaggtcat aaaagaagaa
    18181 ctttttgaag gtattatcaa ctcaaaacgc cgttttaatt acgatgaagt tgatgaaatt
    18241 ttgatacaaa aacctgattt aaaagagctt tcatggcttt atgagctttt tgaaatcaca
    18301 aaaaatttac gcaaaatgcg tcttaaaaat gcctttgaat ttcgcactga agaattaaga
    18361 atgaatttag atgaaaattt aagtctaaaa agcacagttt ttgaaaaaga cacgccttcg
    18421 cataatttaa tcgaagattg tatgctttta gccaataaag ccgcggcaaa actcatagat
    18481 ataggtgttt ttaggaatca cttaagtgct gatgcaagaa aaatcgataa gcttttaaat
    18541 gaattacgcg aactaggcat cgatgtaaat tttaaaccca atcttcctga actcatacgc
    18601 gacatacaag ctttagccga tgagttaaat ttaagagcag aagtagataa actcatcatc
    18661 aaagcacaaa aaaaagcgga atattctagt gtaaatgcgg gacattttgg cttaggtttt
    18721 gataaatact cacattttac aagccctata agaaggtatt ctgatcttat tttacacaga
    18781 cttttaaaag ccaaacaaaa aaacgatgaa aaacttttta attatctact tttaaacata
    18841 gaaagcactt gcgagaatct tagtacactt gaaagagagg cggataaggt tgcttttgat
    18901 tttatggata gaaaatttgc tagatgggcg gctaaaaata taggcaaaaa atttaaagct
    18961 ttagttgtgc aaaatgatgg agtttgcata gctaaactag atgatgaaat caaaggagcg
    19021 gatataatcc tttatgatac gcgtgtaaat ttgctagaaa gtgttgaagt gcaaatcatg
    19081 gaagcggata tagttatggc aaaaatttat gctaaaatca cccaaagact cataaaggaa
    19141 gaaaatgtat agaaaagagc ttcaaatctt actttctaaa gattcaatac ctaatttttt
    19201 ctttctttat ggagcagata attttcaaag cgaactttat gctgaattta taaaagaaaa
    19261 atataagccc gatgaaactt tgaaactttt ttttgaagaa tacaacttca ctcgtgcgag
    19321 tgatttttta agcgcaggat cgctttttag cgaaaaaaaa ttactagaaa tcaaaacttc
    19381 taaaaaaatt ccaacaaaag atcttaaagt tttagtagat ctttgtaaaa acaatgcgga
    19441 caatttcttt cttttagagc tttatgatga aagttctaaa caaagcgata tagaaaaaat
    19501 tttctctcct cattttgtaa gatttttcaa agctaacgga gctaaagaag gcgtggaact
    19561 tttaagcata aaagcaaaac aactaggggt tgaaatcact caaaatgctt tatttactct
    19621 ttttacaagt tttgatgaaa acttatatct tgctgcgagt gagcttaata aatttagtgg
    19681 tttaagagta gatgaaaaaa ccatagaaca atactgctat agtttgaata caggaagttt
    19741 tgaaagcttt tttgagaaaa ttttaaaaaa acaagacttt aaaagcgaac ttgaaaaaat
    19801 tttagataat tttaatgaaa ttgctttaac caactctttg tataattctt tttatcgttt
    19861 gtttaaaatc gcactttatg ctaaagtcaa tggtaaaatt gactttaaag atcttttagg
    19921 ctatactcca cctcctcaag tgggacaaaa tttaagctct caagccttta gtttaaaaat
    19981 cgaacaatat aaagaaattt tcactctttt gcttaaaagc gaatacgagc ttaaaaccaa
    20041 ttctaagctc gtaaaaaaag aatttttgat ttcaaatttg cttaaacttg caaggatttt
    20101 gaaaagctaa atagtaaaat tataaaaatt aaaatcactt tttttattat aaaactaaaa
    20161 aatgttgcta taatactttt aataaaaaca aaaggaatga aaatggattt tgaaaatcaa
    20221 ttaaatgcta tcgttgaaac aatagctgaa cgcaaaacac ttgtcaatac tgaagaagct
    20281 acaaaaatga cttttataat gcccttttta aaaacattgg gttatgatgt ttttaatcct
    20341 agtattgttg tgccagaata tacagcagat ataggaacta aaaaaggcga aaaagtggat
    20401 tatgctattt tcaaagattc aaaacctttt attttaattg aagctaaaaa tcatactgaa
    20461 aatttagata atcataacaa tcagcttgta agatatttta acactaatcc tagtattaaa
    20521 tttgccattc ttaccaatgg tattgaatat agatttttta cagatattga acaacaaaat
    20581 cttatggata aaataccatt tttagttgtt aatcttgaaa aacttaaacc tagagatatt
    20641 aaagatctaa aacgttttat ttgcactgac ttaaacttag atgaaattct aagcattgct
    20701 atggagaaaa aatattaccg aagtatacaa gaaattttta aaagcgaaat agaaaatcca
    20761 agcgatgaat ttacaagttt ttttgctaaa caaatgacag aaaaaagaat gactagtgct
    20821 gttttagaag aattcaaaaa ttacattaaa aaatctttta aagaaattat taatgattta
    20881 gcttatgaaa aaatcacaag tattaaaaac aatcttcaaa acataaacga tgatgaaaat
    20941 gatgagcaaa ttgatgaaag taaagatatt gtcacaacag aagaagaatt acaaggtttc
    21001 tatatagtaa aatcaattct tgctagtgtc agtgccaatc ttgaagatgt aagttacaaa
    21061 gatactttaa gctattttag tattttatat caaggcaaag ttactaagtg gatatgtaga
    21121 ttatatttta atacaagcaa aaaatctatt agttttccgg atggagcaag ttataatata
    21181 gaaaaattag aagatattta tcaatataaa gcagatatta tcaaagcatt tgaaagcaga
    21241 aagtaaaatc atttattgat tttactttca ctccatcaca agtcgcataa ggtgtaagtc
    21301 ctcaccttgt gtgattttat attctatact ttgacattta ggacacttaa aaacattttc
    21361 ttctaaaatg cttacttgat cacattttaa gcataaaatt tcaagtggag caagttctat
    21421 aaaaagttta gcatttttac aaatatttga gttttcttta aaagtttcaa aacaacgctt
    21481 aaaaagatcc acttctatac cactcaaacg cccgattttt acataaattt cttgcacatt
    21541 gtaagcctta ttgtttaagg cattttcttc acaaagttcg attaaagatt ctactatact
    21601 taattcgtgc attagcaaat tcttggtaaa agttcgcctt taggactttc taaaaagcgt
    21661 tttgccccat aagcgttttg taagatcaca cgtgcttttt tctcttctaa aacttctcct
    21721 ataatactcg catttacatt gtattttttt agaatttcta aggcttttaa ctcatcttct
    21781 ttttccacgc aaagtatgaa agtgccttca tttgcaagct cataagcttc ataaccaaaa
    21841 agctcgcaaa gtcctaaaac ctcatcttga acgatgattt tttcttcaaa gatcaaaaga
    21901 tcatttccgc tttgctttgc ccactcattt aaaaccgcac taagcccccc acgagtagca
    21961 tctctcattg ctacaacctt tatatctttt tctaaaagct ctaaaacctc tttatccaaa
    22021 gccttacaat cacttttaac atcagcttct aactcatttc ttttgattaa aacactagct
    22081 ccatgccttc ctatatcacc tgaaagaagt atgctaagcc ctgctttgat atttttactt
    22141 tcttttttag aaataatttc acctaaggcc gtagtgttga tataaatttc atctgctttg
    22201 cccttaggaa caactttagt atcgccacaa actaacataa ctccgcattt ttcacattct
    22261 tctttaatgc tttttaaaat gcgttctagt ttttctagct caaaaccttc ttctaagata
    22321 agccctaaac ttagatattt tggcttagcg cctaccatca aaacatcgtt aatagaacca
    22381 caaacacaaa gtttgcctat attgacctct tcatctaaaa aaatcggact taaaacaaaa
    22441 gaatccgtgc ttaaagccaa atttcctaaa atcgctgcat cattatttgc atttaaaatt
    22501 tcattatcaa agatcttaaa aagcttagtt aaaagctcgt tcatctcttc tccgccacct
    22561 ccgtgggcta aggaaatatt tttcatacat tcacctttga gtatttataa tacgccgcac
    22621 aagcaccctc gccagaaacc atacaacttc ctataggact tcttggcgta caagccttac
    22681 caaaaacttt acaatcataa ggcttggcca aacctcttaa aatttgccca caaatacagg
    22741 ctttgctttc atttttactt tgcaccgtac aatcaaattt tttactcgca tcgtaagcgc
    22801 taaattcttc ttttaactcc aagcctccat ctttaataag tcctaagcca cgaaattcaa
    22861 aatcacacac cctaaagtat ttttttacta aattttgtgc tttaacatta ccttctttgc
    22921 ttacggctct tttgtattga ttatacactt taaaagtgcc ttcattgctt tgttttatga
    22981 tatttaacac actttctaaa atatcaactg gttcaaaacc actcaccgct ataggggttt
    23041 taaactttgc tgccaaaggc tcataaatac cataacctgt tatcacactc acatgggaag
    23101 ggcctaaaaa agcattgatt tttacatttt catcattcat gatcgcttcc acaggtgctg
    23161 gaactgtgat atgattgata tgaaaaaaga cattatttat tttctcttct ataacctttt
    23221 gaagaagcaa agcactcata ggcgtagtag tttcaaaacc tatagcaaaa aagatgatat
    23281 ttttgtttaa attttgctta gcgatttcta aaacctcaag cggagaataa agcgctctaa
    23341 catcagcccc tttagctctt aaatcaagca gagaaatttc acttccaggc acccttaaaa
    23401 gatctcctaa agtacaaaaa atcgtatctt tcatggaggc taacttgata gctgtatcaa
    23461 tgcgaactct tggcataaca caaacaggac atcctggccc atggataaag ttaatttcct
    23521 ttggcaaaat agaaggtagg gcatatttca tgatactatg cgtatgccca ccgcaaattt
    23581 ccatgatatt gataggattt ttaagttctt gttctatgag tttttttaaa gctaaaatgc
    23641 tttctttatc tctaaattca tcgatgaaat tcatttaaac ccaaatctcc ttcatcactt
    23701 tttatctctc cactattcat tttttctact atttcttgat aggttttaat gctttctagt
    23761 gcagcttctt tgtcgatttt ttccatagca acgcctacat ggattaagac ataatcgcct
    23821 tgttttaaag gctcatcaat caaatccaaa ttaacttttc ttttcacacc taaagtttgt
    23881 actaaagcat tatttaactc atcgatttct aaaatttcag aaggtataga taaacacatt
    23941 aaaaaagctc ctttttaagt ttaagcacct tataccaaag ctccatatta gtgccatttt
    24001 ttgcatcaag agtgataata tctgctctag gatttaattc tttaatcaac ttagttgcct
    24061 ctttaagatc aaaatcaaaa tgatgagcca aatctacctt tgtgattaaa actatatcag
    24121 cctttttaaa catcacaggg tatttttgcg gtttatcact tccttcagtt accgaaagca
    24181 aaaccacatt taaatgctct cctaaatcat aacttgcagg acaaaccaaa tttccaacat
    24241 tttctataaa aagcaaatcc acatcatcaa tggctaaatg atgcaaagcc tcatgcacca
    24301 taaaagcatc caaatgacag ctttgccctg tagtgatttg atacgccaaa gctccggcat
    24361 tttttaccct tagagcgtca ttattggttt ctaaatcccc ttcaatcaca gcaattttaa
    24421 gttcattttt caaagcctta atcgtgcttt ctaaaagcgt ggtttttcca ctacctggag
    24481 aactcattaa attgatacaa agcgtgttag cttcattaaa atgcgctcta ttatgcttag
    24541 cttcttcatc atttttgctt aaaattttag aaatcacttc tatggtttta ccctctttta
    24601 agcttggatt ttcatgatgg tgatcgtgat gatgaccatg cgtatggctt gaatttatag
    24661 agcagccgca atctttacac attttctttc cttatatatt ttttgtttca ttttaacctt
    24721 aaaagcatta aaaaattatg agtttttaga atatttgctt tatttttcta aatttaaaaa
    24781 atgcaccatt tgtcctaagg ctatggagct atcattacaa gggtacttta aaggtataaa
    24841 aaaatcaaaa tttttagctt ttaaaatttc aagcaaggtt ttgttttgaa aaacccctcc
    24901 gcttaaaagc acttttaaat cataatcttt gctaaaatct atgataaaat ttgccaaggc
    24961 attaaacata cctgtaatcg ccttagtttt ttcatcttgc aaagccccta ggattaaatt
    25021 tttaaaatta acctgccctt tttctacaaa aagcttataa gaaaaatcaa gatttttatc
    25081 ataaaaagct tcacacatta agccaacttg agcttcataa gaactttttt ctaagttaaa
    25141 aacaatactt ccaaaagcat cgataatgcg tcctaaagaa cttgtttgta agttagaatg
    25201 agaataaatt tttttaagat ttttaagttt aatttttgga atttttgcta aaaaat
//
LOCUS       DAEDTT010000009        25155 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.009, whole genome shotgun sequence.
ACCESSION   DAEDTT010000009 DAEDTT010000000
VERSION     DAEDTT010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25155
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.009"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(62..718)
                     /locus_tag="KLC54_000290"
     CDS             complement(62..718)
                     /locus_tag="KLC54_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HBD9176702.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANN
                     HISGRSLDSPLTAFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVG
                     ILCINHDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSV
                     DSSYLNSNYQLSITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKISEPSVYRYLKKFKK
                     "
     gene            886..1248
                     /locus_tag="KLC54_000291"
     CDS             886..1248
                     /locus_tag="KLC54_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HBD9176703.1"
                     /translation="MSNYPKAIGPYSAYREANGLLFISGQLPINPASGEIESSDIKEQ
                     TKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEIIAQKG"
     gene            1252..2691
                     /gene="dcuC"
                     /locus_tag="KLC54_000292"
     CDS             1252..2691
                     /gene="dcuC"
                     /locus_tag="KLC54_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
                     /protein_id="HBD9176704.1"
                     /translation="MLGIVFSLFSVFLLVFMLYKKINAHMALLLSGLLLLSLAALFGL
                     SPHIVAKGSLNLGFFDIFQVFNQTMSSTLAGLGLTLMTIAGFSAYMDHVGASYALFKV
                     FEKPLKAVKSPYVLLIVAYFIVQFLVLFIPSHAGLALLLMVTMYPILVRSGVSKLSAL
                     SVIAICQYIDHGPGSGNVIMASKVAEVDPAIYFVHYQLPTTLPIIIAVGIAIYLCNKF
                     FDKKDNFVFNAQEIEKELNENEGKEKELKKPPRIYAILPIIPLVLILGFSSVLDSILV
                     LMGISSAEEVKAVASTAIKMNVPVAMVISTFVAIIFEMIRYKSIVETLNSIMIFFKGM
                     GHLFVITISLIVCGQVFASGLLSVGFVDTLIEFCKNAGFGVLAIIIAVSILLAVCAFL
                     MGSGNAAFFSFAPLIPNIAKHFGVETITMIAPIQIMTGFGRCVSPIAPAILAISAIAK
                     VSPFAVVKRTAIPMLVAAIVNVIMTYIYL"
     gene            2704..3867
                     /locus_tag="KLC54_000293"
     CDS             2704..3867
                     /locus_tag="KLC54_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HBD9176705.1"
                     /translation="MNSKTKLIHCGRGDQGAEVRSVNPTLMRASTILFKDHATWQKYR
                     ELRKTDRVLSYGARGTTTNFELEKLICTLEGGYRAQLFPTGLAALAMVLLNYASKDAH
                     FLITDAIYGPVRTICELFLDKMGVEIDFLKADASDVEEKIKPNTKLILCESPGSILYE
                     VIDLPKLCKIAHAHNIPVAIDNTYSSGYFLNPLELGVDISVIAATKYLSGHSDVTMGI
                     VVINEKEWKNFDKLPEALGFTTSPDDAYLVLRGMRTLDVRMKAHEKSADEIVEFLQSR
                     KEIKTIFYPKLKSHPNHEIFMRDHKGANGMITIEFTEGYSKDDAIKFVDKLEYFSIGA
                     SWGGYESLATVTTPPRTATDWSARGPFVRFHIGLEDTKDLIADLTQAFDSIKK"
     gene            3877..5244
                     /locus_tag="KLC54_000294"
     CDS             3877..5244
                     /locus_tag="KLC54_000294"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HBD9176706.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQPARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTISNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLAKIKN
                     SAILK"
     gene            5253..6593
                     /locus_tag="KLC54_000295"
     CDS             5253..6593
                     /locus_tag="KLC54_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HBD9176707.1"
                     /translation="MFYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKE
                     ECVLNAFKAFENLSTDKNTPIWVNDQKLVPIYAAMLDGIASHALDFDDTHTEAILHAS
                     AILTPLCLSYGFHVNKDAKKIIKAFIVGWEIAARVGIASKGTFHKRGFHTTAIAGIFG
                     SVSASAILLDLNKEQIINALGLAGSFASGVNEFLSNGSNSKVLHIANAIKNGIMVAHF
                     AKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELGKALGEIWQTMQVSIKPYPSCHFAH
                     GLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLM
                     ALGFFDGKITLDSYENLKREEVLEFAKKISYEKRKSQGFPKYFPGHLEASLQDGRIIQ
                     KDVFINKGNFDNPLSFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF"
     gene            6675..6899
                     /locus_tag="KLC54_000296"
     CDS             6675..6899
                     /locus_tag="KLC54_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HBD9176708.1"
                     /translation="MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDTSCVILRSDEAKTIEVNLI"
     gene            6896..8737
                     /gene="feoB"
                     /locus_tag="KLC54_000297"
     CDS             6896..8737
                     /gene="feoB"
                     /locus_tag="KLC54_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HBD9176709.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSVLSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIH
                     KFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGI
                     IAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGF
                     GCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGI
                     YILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAG
                     TFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLELDWKL
                     SVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIY
                     NPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLYIAKILLN"
     gene            complement(8734..10227)
                     /locus_tag="KLC54_000298"
     CDS             complement(8734..10227)
                     /locus_tag="KLC54_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HBD9176710.1"
                     /translation="MTKLSNEELKNILEGRIKKLENSILKEDKVVNEESVKILAKHLS
                     LGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKVGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYAFIEQ
                     NFDENPMPSKDFWKYLEISFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGVAYSILKAFEDNIAKISSLKAS"
     gene            complement(10231..11055)
                     /gene="fabI"
                     /locus_tag="KLC54_000299"
     CDS             complement(10231..11055)
                     /gene="fabI"
                     /locus_tag="KLC54_000299"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HBD9176711.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEVHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            complement(11059..11730)
                     /locus_tag="KLC54_000300"
     CDS             complement(11059..11730)
                     /locus_tag="KLC54_000300"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HBD9176712.1"
                     /translation="MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFL
                     ENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEVIDLNYEKLIIAYEPIYSIGTGV
                     SAQATDIAKVLEFLASLTKAPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            complement(11727..12929)
                     /locus_tag="KLC54_000301"
     CDS             complement(11727..12929)
                     /locus_tag="KLC54_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HBD9176713.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKT
                     KAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            complement(12932..13930)
                     /gene="gap"
                     /locus_tag="KLC54_000302"
     CDS             complement(12932..13930)
                     /gene="gap"
                     /locus_tag="KLC54_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HBD9176714.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAATTNLKGILMVDDE
                     ERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            13990..14535
                     /gene="nadD"
                     /locus_tag="KLC54_000303"
     CDS             13990..14535
                     /gene="nadD"
                     /locus_tag="KLC54_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HBD9176715.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFK
                     QNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNI
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            14563..14889
                     /gene="rsfS"
                     /locus_tag="KLC54_000304"
     CDS             14563..14889
                     /gene="rsfS"
                     /locus_tag="KLC54_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HBD9176716.1"
                     /translation="MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(14920..15297)
                     /locus_tag="KLC54_000305"
     CDS             complement(14920..15297)
                     /locus_tag="KLC54_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HBD9176717.1"
                     /translation="MKKILVLLLLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKKEIKEYIDNL"
     gene            complement(15345..16715)
                     /gene="pgmL"
                     /locus_tag="KLC54_000306"
     CDS             complement(15345..16715)
                     /gene="pgmL"
                     /locus_tag="KLC54_000306"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HBD9176718.1"
                     /translation="MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVS
                     VGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSH
                     NPKDYNGFKITINKESFFGEELKEFSKEVYKHLDDEIEENLEVEKYDILSLYVKFMCE
                     QFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEE
                     NLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKNIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIHVNEEEKFKLVEEFQKEIEKGAL
                     KGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEI
                     KARLKN"
     gene            16838..17374
                     /gene="fliL"
                     /locus_tag="KLC54_000307"
     CDS             16838..17374
                     /gene="fliL"
                     /locus_tag="KLC54_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HBD9176719.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            17374..17721
                     /locus_tag="KLC54_000308"
     CDS             17374..17721
                     /locus_tag="KLC54_000308"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HBD9176720.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAIV"
     gene            complement(17722..18141)
                     /locus_tag="KLC54_000309"
     CDS             complement(17722..18141)
                     /locus_tag="KLC54_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176721.1"
                     /translation="MKRVRVKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK"
     gene            complement(18138..19499)
                     /locus_tag="KLC54_000310"
     CDS             complement(18138..19499)
                     /locus_tag="KLC54_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HBD9176722.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEGKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRTKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            complement(19496..20617)
                     /locus_tag="KLC54_000311"
     CDS             complement(19496..20617)
                     /locus_tag="KLC54_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HBD9176723.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKTDLSKIE
                     KNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKIGTMQERIKLFANVIVEKLKQNESKQDYE
                     LILVAHSVGTIVCIEVLEYILRQHLDLSLLCKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            complement(20690..21874)
                     /gene="kpsS"
                     /locus_tag="KLC54_000312"
     CDS             complement(20690..21874)
                     /gene="kpsS"
                     /locus_tag="KLC54_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HBD9176724.1"
                     /translation="MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLSMKMKKNQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYKDFFQSKKIDAILMYNDCRIIHAKAIKVAKE
                     LGIEVWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQSIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFL
                     DK"
     gene            complement(21871..22968)
                     /locus_tag="KLC54_000313"
                     /pseudo
     CDS             complement(21871..22968)
                     /locus_tag="KLC54_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
     gene            complement(23189..23680)
                     /locus_tag="KLC54_000314"
     CDS             complement(23189..23680)
                     /locus_tag="KLC54_000314"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176725.1"
                     /translation="MNFKTLSILLFFVNFFVACSDDSMLSCDDTQVLDFLEQEEKGQI
                     YQDIMQNLKYTNRVNLDYFSIEPELSKATQEALQEFVNSVDISYSFFIAESIDEKTKK
                     SVCSAVETLRFPRESEKLFKLSIQDLENAFNSKMKLQEENDAIYQAKFCVAISLIQKI
                     IIN"
     gene            complement(23833..24205)
                     /locus_tag="KLC54_000315"
                     /pseudo
     CDS             complement(23833..24205)
                     /locus_tag="KLC54_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882950.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2,3-sialyltransferase"
     gene            complement(24378..24518)
                     /locus_tag="KLC54_000316"
     CDS             complement(24378..24518)
                     /locus_tag="KLC54_000316"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176726.1"
                     /translation="MEDDLMSDDNLETYFRLLSIPWAYIPFDNDLQCFENFVKDIIIR
                     NF"
BASE COUNT         8665 a         4311 c         3469 g         8710 t
ORIGIN      
        1 taaaaataat tttttaaaga aaacgagcct aaaaatacta aaatttatca aaaaatttta
       61 gttatttttt aaatttcttc agatacctat aaacactagg ttctgaaatt tttaaaaatt
      121 ttgctacgat aggaaccgct ccttttatat taaaaatacc tttttcatat agcttttcag
      181 caatttcttc tttttgagta atgcttaatt gataattaga atttaaataa ctagaatcta
      241 cactttgaac taaaatatcc tctatcgagt gacttaatgt ttctatgctt gaatcatttt
      301 gagaaaaact aatatttcct aaaatatcac ccatatctcc aattttttct aaatcaatca
      361 tcttgcatat taaatctctc ataatgctag tatcatgatt gatacacaaa atacctacta
      421 atttgtcatg atttttaata aaaaaagtag atcctctaat taattttgat tttccaacaa
      481 gagccttata atcacataaa aaatcttttt ctaaatattt tttattttgc ataagctcac
      541 ttgcaaaagc agtcaaggga gaatctaaac ttctcccact aatgtgattg ttagcaattg
      601 ccgcaatata agccccatct tcagtaatta catgaaaaac tatctcatat tgctcaccta
      661 aaacttctcc taaaaaatat gtcaacttta taaattgttg tttttgtccc tcatccataa
      721 aactgccttc aataaaaaat taatataata ttaaattcta ctctttatac tttaaaacat
      781 ttcttaaaaa taaaatttta ttattatgat aataaactat tgacaaatta ttattgtagt
      841 gataaaatgc attctgttta atctatattt aacaaaggag aattcatgtc aaactatcca
      901 aaggccattg gtccatactc agcttatagg gaagcaaatg gacttttatt tatatcagga
      961 caacttccta tcaaccctgc ttcaggagaa atagaaagct ctgatatcaa agaacaaacc
     1021 aaacaatctt taaaaaatat cggtgctatc ttagaagaaa atggtatcag ttatgataaa
     1081 gtgattaaaa ccacttgctt tttagctgat attaatgatt ttgtagcatt taatgaaatt
     1141 tatgctgaat tttttaaagc tccttatcca gcaagaagtg cttttgcagt aaaagatctg
     1201 ccaaaaaaag ctaaagtaga gatagagatc atcgctcaaa aaggataaaa catgctaggt
     1261 attgtttttt ctttatttag tgttttttta cttgttttta tgctttataa aaaaatcaat
     1321 gctcacatgg cattgctttt aagtggttta cttttacttt ccttagctgc tctttttgga
     1381 ctttctccac acattgtcgc taaaggttct ttaaatttag gtttttttga tatttttcaa
     1441 gttttcaatc aaaccatgtc aagtacatta gcagggcttg gacttacact tatgactata
     1501 gcaggttttt ctgcttatat ggatcatgta ggggcttctt atgcactttt taaagttttt
     1561 gaaaaacctt taaaagccgt aaaatctcct tatgttttac tcatagttgc ttattttatc
     1621 gtgcaatttt tagttctttt catcccttct cacgcaggct tggcactttt acttatggtt
     1681 actatgtatc ctatacttgt acgctctggt gtttcaaaac tttctgcctt aagtgtgatt
     1741 gctatttgtc aatatatcga tcatgggcct ggaagtggaa atgtgatcat ggcatcaaaa
     1801 gtagctgaag ttgatcctgc aatttatttt gttcattatc aactccctac aaccttgcct
     1861 atcattatag ctgtaggtat tgcgatatat ctttgcaata aattttttga caaaaaagat
     1921 aattttgtct tcaatgcaca agaaattgaa aaagaactaa atgaaaatga aggtaaagaa
     1981 aaagaactta aaaagcctcc tagaatttat gcgattttac ctataattcc tttggtttta
     2041 atcctaggat ttagttccgt gcttgatagc atcttggttt taatgggaat aagtagtgct
     2101 gaagaagtta aagcagttgc tagcactgcc attaaaatga atgttccagt agcaatggtg
     2161 atttcaactt ttgtggctat tatttttgaa atgatacgct ataaaagtat agtagaaact
     2221 cttaattcta ttatgatttt ctttaaagga atgggacatt tatttgttat cacaatttca
     2281 ctcatcgttt gtggtcaagt atttgcaagc ggtcttttat ctgtaggttt tgtagatact
     2341 ttaatagaat tttgcaaaaa tgcaggattt ggagttttgg ctattattat cgccgtttca
     2401 atcttgcttg cagtttgtgc tttcttaatg ggttcaggaa atgcggcatt ttttagcttt
     2461 gctccactta tcccaaatat agcaaaacac tttggagttg aaactatcac catgatagca
     2521 ccaattcaaa tcatgacggg ctttggaaga tgtgttagtc ctattgcacc agcgatttta
     2581 gctatctcag ctattgcaaa agtaagtcct tttgccgtgg ttaaaagaac agctattcct
     2641 atgcttgtag cggctattgt aaatgttatt atgacttata tctatcttta aaaaggagaa
     2701 aaaatgaact caaaaactaa acttattcat tgtggcagag gcgatcaagg cgctgaagta
     2761 agatcagtca atcctacact tatgcgtgca tcaaccatac tttttaaaga tcacgcaact
     2821 tggcaaaaat acagagaatt aagaaaaaca gatcgtgttt taagctatgg ggctagagga
     2881 acaacaacca attttgaact tgaaaaactt atttgcactc tagagggtgg ttatagagca
     2941 caacttttcc caacaggact tgcagcatta gctatggtgc ttttaaacta tgcaagcaaa
     3001 gatgcacatt ttttaatcac tgatgcaatt tatgggcctg taagaacgat ttgcgaatta
     3061 tttttagaca aaatgggagt tgaaattgat tttttaaaag ctgatgcaag tgatgtagaa
     3121 gaaaaaatca aacctaatac caagcttatc ttatgtgaaa gtccaggttc tatactttat
     3181 gaagtcatag atttaccaaa actttgcaaa attgcccatg cgcataatat ccctgtagct
     3241 attgacaata cttattctag tggatatttt ctaaatcctt tagaacttgg agtggatatt
     3301 tcagttatcg ctgctacaaa atatcttagt ggacactctg atgtaaccat gggtatagta
     3361 gtaatcaacg aaaaagaatg gaaaaatttt gacaaacttc cagaagcttt aggctttaca
     3421 acaagtcctg atgatgctta cttagtactt cgtggtatga gaacactaga tgtgagaatg
     3481 aaagctcatg aaaaaagtgc tgatgaaatt gtagagtttt tacaaagtag aaaagaaatt
     3541 aaaacaattt tctatccaaa actcaaatcc cacccaaatc atgaaatttt catgcgtgat
     3601 cataaaggtg caaatggtat gattaccata gaatttacag aaggttatag caaagatgat
     3661 gctattaaat ttgtagataa actagaatac ttttcaattg gtgctagctg gggtggatat
     3721 gaaagcttag ccaccgtaac tactccacct agaactgcaa cagattggag tgcaagagga
     3781 ccatttgtaa gatttcatat aggtcttgaa gatactaaag atttaattgc tgatttaaca
     3841 caagcttttg atagtattaa aaaataagga gataagatga caggaattag cgtatttgat
     3901 catagattac tagcagactc atggagcacg caggaaatgc gtgctatttt ttgcgaacaa
     3961 aaccgcatac aaaaatggct cgatgttgaa gcagctttag caaaagcaca agcaaaactt
     4021 aaaattatcc ctaaaaaagc agctgatgag atcgcaaaaa aagctcatta taaatttatg
     4081 gatatggact ttatctttgc tgaatttaaa aagaccaaac accctttagt tcctactgta
     4141 agaggattag aaaaagcttg cgataataat ttaggcgaat atgtacattt tggagtaacc
     4201 actcaagata tcatcgatac aggactggtt ttacaattta aagaagcaat gactcttgta
     4261 aaaagtgaat taaaagctat cgcaaaagcc ttagcgaaac tagctaaaac ccataaaaac
     4321 actgctatga tgggaagaac tttagcactt caagctttgc ctattacttt tggacataaa
     4381 gtggctattt ggttaagcga acttgagcgt cattttgaaa gaatacttga gcttgaaaaa
     4441 agactttatg taggtagtat agtaggtgct gtaggaacta aagcaagttt aagtgatgag
     4501 tgcaatgaag tagaaaaact cactttagaa aatttaggac ttgatgtgcc taatatttct
     4561 tggcaacccg cacgtgatcg ctttatagag cttggttttg tactaggtaa tatcaacgca
     4621 acctttaaca aaatcgctca tgaaatttta atcctttcgc ataatgaaat tgatgaagtt
     4681 gctgaacctt ttggaaaagg acaagtagga tcaagcacta tgccacacaa aagaaatcct
     4741 gcagtaagcg aaaatgcggt tacaataagc aatgccttta aagcaaattt agccatttta
     4801 agcgatattg aaagacatga acatgaaaga gatggtcaag tttggaaaat ggaatggaag
     4861 cttttacctg aaatgttttt aatgctttct gtggttttag caaatatgaa attcgctctt
     4921 agtgatttag aagtaaaaaa agacaaaatg cttaaaaatt taaatactct taatggtttt
     4981 gttttagccg agcgtgttat gtttgcatta agcgatcatt atggaaaaca acatgcccat
     5041 gaaattgttt atgaaaatgc tatgctaggt atagaaaaac aaaaaacttt taaagaagtt
     5101 ttacttgcag ataaaagagt atctaaggta ttgaaagaaa aagaaattga tgctttactt
     5161 gatgcaacaa cctatgtagg atatgcacca aaacttgtag atgaattttt agcaaaaatc
     5221 aaaaatagcg ctatcttaaa ataggaaaaa tcatgttcta tagtgaaatt ttagcggatt
     5281 ttattttcaa tcttaaatat gaaaatatcc ctaatacagt tgttcaaagg gctaaagagc
     5341 ttatgcttga tagccttgga acagccatag cagcaagcaa agaagaatgt gttttaaatg
     5401 cttttaaagc ttttgaaaat ttaagcacag ataaaaatac tcctatttgg gtaaatgatc
     5461 aaaaactagt tcctatatac gcagctatgc tagatggcat tgcttctcat gcgttagatt
     5521 ttgacgatac gcatacagaa gcgattttgc atgcaagtgc gattttaact ccactttgtt
     5581 taagttatgg ttttcatgtt aacaaagatg caaaaaaaat catcaaagct tttatagtag
     5641 gctgggaaat tgcagctaga gtaggcattg caagcaaagg tacttttcat aagcgtggtt
     5701 ttcatactac tgctattgca ggaatttttg gaagcgtgag tgcaagtgca atcttgctag
     5761 atcttaacaa agaacaaatc attaatgctt taggacttgc aggaagtttt gcaagtgggg
     5821 ttaatgagtt tttatccaat ggatctaatt caaaagtttt acatattgcc aatgctatta
     5881 aaaacggcat tatggtggct cattttgcta aaaacaatat gagtgggcct ttgagtattt
     5941 ttgaaggtag ggataatatc tttaaatgtt ttggcataga agaagaatgc gataaaacag
     6001 aacttggcaa agccttaggt gaaatttggc aaaccatgca agtttcaatc aaaccttatc
     6061 caagctgtca ttttgctcat gggcttattg attgtgccat tgctttaaaa aatgatggtt
     6121 taaaagctga tgaaattaaa agtattcatt gttttgtaga tgaagttcct atttctttta
     6181 tctgtgatcc tttggaagca aaatacactc caaatagtgc ttatgaagct aaattttcca
     6241 tgcctttttt aatggctcta ggattctttg atggcaaaat cactcttgat tcttatgaaa
     6301 atttaaagcg tgaagaagta ctagaatttg ctaaaaaaat cagttacgaa aaaagaaaat
     6361 ctcaaggctt tccaaaatat tttccagggc atttagaagc cagtttgcaa gatggacgca
     6421 taatccaaaa agatgttttt atcaataaag gtaattttga taatccacta agttttgaag
     6481 aattaaaagc taaattttta gccaatgcac aaatttacct tgataatgct aaagctaaca
     6541 aaattctaga tcaaatcatc aatctagaaa atttaaacca cttttctttt taaatattta
     6601 tccttctttt tacaagaagg ataatttcat tacacttttt tattataata tttattatta
     6661 atttaggaat tacaatgact ttaaacgagt taaaagatgg acaaaaagct attattgtca
     6721 atttaaacgc tcacaaagaa ctcaaaaata gacttttaag ctttggattt attaaaaata
     6781 aaaacttgaa aaaaattcac tcctctttaa aaaatgccac cataatggta gaacttgata
     6841 caagttgtgt tatcctaaga tctgatgaag ctaaaaccat agaagtgaat cttatatgaa
     6901 aaaaatcaaa atagcccttg taggtcagcc taatgtaggc aaaagtcttc ttattaatgc
     6961 gctttgcaaa gccaatatga aagtaggaaa ttttagcgga gttactatag aaaaagcaag
     7021 cgcaaaaact ttttataaaa actatgaatt tgaagtcatt gatttgccag gaacttattc
     7081 tttagatgga tatagcgaag aagaaaaaat cacacgtcat tttttaaatc aaaatgacta
     7141 tgatgttatt gttaatgttt tagatgctac caatttagaa cgtaatctta tccttagtgc
     7201 agaactttta agccttaata aaaaaatgct tttagcttta aatatgtgtg atgaagccaa
     7261 aaaagaaggc atagagcttg acacttctgt tttaagccaa gaatttcaaa gtcaagttgt
     7321 tgaaatttca gcaaaaacaa aagaaaattt agaacttttg ctgcaaaaaa ttattatttt
     7381 atttgaaagt aaatttattc caagatccca attttacact ccgctttgcg aaaaaagtcc
     7441 agaaaaagaa gatttattat attttattaa tgaactttca aaaaaaatta ttacacacaa
     7501 aaaagaagaa agaaatttaa ccaaaaaaat cgatgccttg cttatccata aattctttgg
     7561 cttacctata tttttatttt taatgtggct tttatttcaa ctcaccttta gcttagggca
     7621 aattcctatg gattatatag aatcgggctt taatacctta ggtgaatttg ttaaaaacaa
     7681 tatttctaat acctttatcg cttcagcttt ggctgatggg attatcgcag gtgttggtgc
     7741 tgtgatactt tttttgccta atataatgat tttattttta ggcatagctc ttttagaaac
     7801 cacaggctat atgtcaagag tagctttttt acttgatggg attttacata aatttggttt
     7861 gcatggtaaa agttttattc cactaatcac tggttttggt tgttcagtac ctgcttttat
     7921 ggctacacgc actcttaaga acaaaagaga tagactttta actctttttg tgatcaattt
     7981 tatgagttgc ggggcaagac ttcctgtata tgtgcttttt atcggtgctt tttttccaag
     8041 tgaaaaagca ggaaattatc tttttggaat ttatatttta ggtgcgattt taggactttg
     8101 tgctgcaaaa tttttaagaa tgacagcatt tcgtggactt gatgaacctt ttgttatgga
     8161 aatgccaaaa tatcgtatgc caaattggca tttagtttgg tttatggttt ataataaagc
     8221 caaaatgtat cttaaaaaag caggaacttt catacttttg gcctctttgc tcatatggtt
     8281 tgctagcaat tttccaaaaa gtgaagaaaa tttaaatgat tttaatgctc aagaaagagc
     8341 tatagaacaa agttatttag gacaatttgg caaaggcata gaacctattt ttaaacccct
     8401 tgagttagat tggaaattaa gcgtatcttt aatcagtggt ttggctgcta aagaagtgat
     8461 gatctcaact atgggcgtgc tttattcact aggaaaagat gtagatgaaa caaataatga
     8521 tttaaaagga attatcgcta aaaatatacc cataccaagt gcagtggctt ttattttatt
     8581 tgtaatgatt tataatccct gctttgcagc aactatagtt ttttcaaaag aaagtggaaa
     8641 gctaaaatac actctctttc tctttctttt tacctgcaca agtgcttata tagtagcttt
     8701 tataggactt tatatcgcta aaattttatt aaactaactt gcttttaatg atgaaatttt
     8761 agcgatatta tcttcaaaag cttttaaaat gctataagca acaccttcaa aatcaagtcc
     8821 gccgcaaaga tagattaaag tcatacgaaa agatttgctc acatcaagct ttggtttttc
     8881 agcgttcata tttaacttaa aatcataagg acttgcatgt ttaaaagcat aattttttgc
     8941 cgcaattaaa aaatcattct tatcttttaa aaatgcgcct ttaaccaaaa taaagcttat
     9001 ctcaagatat ttccaaaaat cttttgaagg cataggattt tcatcaaaat tttgttctat
     9061 aaaagcatag tttttttcaa aggatttttt ataattttct acaagcaaag cgcctaattt
     9121 atttttagct atattttgta aaataagttt tatattgctt tcaaattcaa aatctatttg
     9181 ttctaaaatt ttaatttgct cttctagaaa aaattcttgt tttaactctt cattacaaag
     9241 tttagcgtaa gaaaaaatat ttgccatagg cttttcataa ttcccaaact catcccaaaa
     9301 atttttctca ctacaggcta tacaaccatg tcctgcggcc actggccaag aagttttagc
     9361 attaaatttc actttaggac agttattgta agtataaggt cctttacaac ctaccttaaa
     9421 taaacaagct ccattctttg cagcttcatc gtcaaaatgt tcagcaaaaa tcccactttc
     9481 aaattttgcc tttctttcac acatatcatg caggcattta ccataagccc aaacaggacg
     9541 attttgctca tcaagttcag gtaaaactcc aaataaagca aaaaaactta aagtcgcaat
     9601 gatatttata tcacttggag gacaacctgg gatatttact actttctgac ttaaaacttc
     9661 actaatacca caagttttac taggatttgg ataagcagcc tgaataccac cataacttga
     9721 acaagtaccc actgcaaaga tagccttggc tttagcggct agtttttcta aaatttcata
     9781 gccactctct ccttgtgctc ctatagtaag aaaaaaggta tcaatggctg caacaccacc
     9841 ttcaaccgct aaaataaaat cttcttctaa aacatgctct aaaagctctt cagctttagt
     9901 gccatttgct gccattaaag tttcatgata ttctaaagaa aaaaaatcaa aaataagctc
     9961 atcaaaactt ggcaactcag aacgcaacaa actctcacta caccctgtac attcacaaag
    10021 atgaagccat actaactttg ttttaggtgc gatttgaaaa aatctttgag caagagctgg
    10081 aatttcattg cctaaagata aatgcttagc aagaattttt acactttctt cattgacaac
    10141 cttatcctct tttaaaatgg aattttcaag ttttttaatg cgaccttcaa gtatattttt
    10201 taattcttca ttgctaagct ttgtcatttt ttatcctttt tgattatccc aacaaagaac
    10261 agtttgccct tcttcatttt tttcaacatc acccataccc atgatgttat atcctgcatc
    10321 gacataatgt acttcacctg taacaccatt tgccaaatcg ctaagtaaat acatagccga
    10381 atttcctaca tcttctatac tcacattgcg ttttaaagga gaattgattt cattgtattt
    10441 taaaatcatt ctaaaatctc ctattccact tgctgctaaa gttttaatag gacctgctga
    10501 aatagcatta acacgaattc cttttacccc taaatctctt gctaaataac gcacagaact
    10561 ttcaagtgca gcttttgcta cacccataac attataatga ggcacatatt taaccccacc
    10621 aagataactt aaagtcaaaa tcgaaccctt atcttttaaa ataggtaaaa ccgcacgtgt
    10681 taaagaaagt aaagaataca cagaagtttg catagctata tcaaaagctt cttttgaagt
    10741 ttctaaaaaa gaattttcta aagcctcttt tggagcaaaa gcaaccgcat gtaccacaaa
    10801 atcaatctca cctaaatctt ttttgatttt ttcagcgata gaatctaaat gctcattatt
    10861 gtttacatca agctcgtaaa caaaattaga attaaactct tgtgctatag gttctacgcg
    10921 tttttttaaa gcatcattta aaaaagtaaa agcaagctcg gctccttgat caaaacatgc
    10981 ttttgctatg ccataagcga tagatttatt atttgcaacc cctacaataa gacctttttt
    11041 acccttcata atcatctttt atcctttgat taattttata aaattttcta cttttaaagc
    11101 tgcagagcct atcaaaactc caccacaatg atttacactt aaaatttctt taatattatt
    11161 ttcattcaca cttccaccat aaagcaaagg tgctttggtt aaactcgcta aaaattcaag
    11221 cactttagca atatctgtag cttgtgcact cactcccgtt cctatagaat aaataggctc
    11281 ataagcgatg atgagttttt cataatttaa atcaataact tcaagttgtt tttttaaaaa
    11341 ctctaaagtc ttgcctgaat tttttgtatc taaattttca cctatacaaa aaacaatttt
    11401 ataaccatgc tctttagcaa aatcaaattt agccttaata aattcttcat ctcctaaagc
    11461 tcttctttca gaatgcccga ttaaaacaca tttgatccca aattcgtcca aatgttcttt
    11521 tccaagctcg cctgtaaaag ctccattaac acaaggataa aaattttgcg ctccttgtat
    11581 gaagttattt tcattttcta aaaatgctac gctaggtggg aaaacgataa tatcatcgca
    11641 ttttgccccc atagttttat ttaaaatttc agcataaatt ttaaagcttg cccttgtgtg
    11701 attgcatttt aaatttgcag caaagatcat tcattttcct tagatcttaa agcttttaca
    11761 cctggaagtt ctttaccctc tataagttca agagaagcac cacctccagt ggaaataaaa
    11821 gtcatttcat ctgcatcacc tgcacgcgca accacatcag ccgtatcacc gcctccaaca
    11881 acagaagttg catgtccttc gctgatataa tgactcattt taatgctacc ttttgaaaat
    11941 ttatcaattt caaaaacacc cataggtcca ttccaccaaa tcgtttgcgc atcagaaatc
    12001 acctccttaa aaagtctcac actcgcaggt cctatatcta aacccatcca accatttgga
    12061 atttcttgcg ctggaacaaa tttcatcggc gcatcttgtg agcacgcagg agcggctaca
    12121 acgtctactg gaagataaat tttcactcct aaatttttac ccttggtaag aattttatta
    12181 gcttcttcta aaagttcttc ttctaaaagt gaatttccta tatcataacc taaagctttt
    12241 aaaaaagtaa atgccatacc tccgcctatg attaatttat ctacctttgg taataaattt
    12301 gtcaatgctt gaagttttcc acttaccttt gaacctccaa caacagcgac aaaaggacgt
    12361 gctggatgtt tgataagatt gcttgcaaaa tcaatttctt tttggagtaa aaatcctgcg
    12421 cctttgtgtt tttcatcaaa aaatttagta atcgcctcta cactagaatg tgctctatgg
    12481 catactccaa aagcatcatt gatataaact tgaaccatag aagcaagttc tttggctaaa
    12541 ttttcatcat ttttagtttc gcctttttca aaacgcaaat tttcaagaag taaaatttca
    12601 cccgctttta aattcatagc tttggttttt gcatcttcgc cgataacatc ttttgccata
    12661 ataatttctt tatctaaaag tctagcaaga cgcttagcca caggttctaa agaatattta
    12721 gagctaattt cttttggacg ccctaaatga gaggctaaaa tcacactaca gccattatcc
    12781 aaacaatatc ttatcgtagg aatagctgat cttatgcgtc tatcatcagt gatatttaaa
    12841 aaatcatctt gaggaacatt aaaatcacat cttataaaaa cttttttctt agctaaatca
    12901 atgtctttta tagaaataat atcactcatg attaagcctt atttgcaata tatactgcca
    12961 tatctactag acgacttgaa tagccccatt cattatcata ccaagcaatt accttgataa
    13021 aatcatccgc aatcacttga gttaaatcac ttgctacaat agctccataa gaacaagtga
    13081 taaaatcgct tgaaactctt tcttcatcat ctaccattaa aatgcctttt aaatttgtag
    13141 ttgcagcttt tctaaaagct tcattgattt catctttgct gactttacgg cttagttgtg
    13201 cagttaaatc cacgcttgat acatcaatca ctggcacacg catactttgt ccatgaagct
    13261 tgccattaag ttcaggcata acaagtttca tagcttttgc tgcgcctgta gaagttggaa
    13321 tgatattttg cgctgcagca cgagaacggc gtttatcttt agctttagca tcaataatac
    13381 tttgtccatt tgtataagca tgtattgttg tcataagtcc tttttctatg ccaaaattat
    13441 cttgtaaaac acgacaaaca ggacctaaac aatttgttgt acaacttgca ttagaaataa
    13501 tgctttcacc cttgtaaagt tctgaattta ctcctaaaac ataagtagga gtatcatctt
    13561 ttgcaggagc actcatgatc actttttgta ctcccatatc tataaattct tgacattttg
    13621 ccatagttaa atgcgctcct gtgcactcta aaacaatttg tgcgccgtgt tttgcaaagt
    13681 caagatcttt tacattgcga cttttaaata ctttgatttt tttaccattt accactaaat
    13741 catcgccttc actatcaaca ctgcctttaa attcaccatg tactgtatcg tatttaaaaa
    13801 ggtattttgt aagttcaata tccgtagtat catttatcgc cacaagctca atatcatttc
    13861 tttctaagat gattcttgca acacatctgc ctatgcgtcc aaaaccattt atagcaactt
    13921 ttacagccat ttaatttcct tttgcaaaat ataatgctaa tattctacaa aaaaaaggtt
    13981 aaaattttaa tgaagatagc actttttggt ggcagttttg atccaccaca taatggacac
    14041 aatagcgttg ttttagaggc tttggaaaaa ttagatattg ataagcttat tattatgcct
    14101 acttatatca acccttttaa acaaaacttt agtgctgatg aaaagcaaag attcttatgg
    14161 gttaaaaaac tttggggaca ttttccaaaa gttgaaattt gtgattttga aaccaagcaa
    14221 aaacgccctg ttcctagtat agaaagtgtt aaatatcttt ataagcttta taatcctagc
    14281 aaattttatc ttttaattgg cgcagatcat ttagagaaac ttcatctttg gcatgatttt
    14341 gaaaaattaa attctttagt agaatttgtt attgctaatc gcaatgatat agaaattcct
    14401 aaaaatttta aagatttaaa aactgataaa aaaatcgcat cttctttcat acgcaacact
    14461 ttaaatataa atgaagtttg tgaagaaatt aaagatgaag taaaaaaata ttatgaaaaa
    14521 ttacaaaaaa attgatacaa tttcaaaaat taaaggaaaa gaatgcaaga aagaatagat
    14581 ttaatcgtta aaattttaga tgaaaaaaaa gctgaagata tcaaaaccat tgacatgagc
    14641 gagcaagaat actttgtaaa atatgtcatt atcgcagcta ctttaggaga aagacacgct
    14701 ctatccttga tcgatgagct taaaacacaa cttaaagcca aaggtgagga atttttaaac
    14761 atagatagta gcgaagaatg gagtgtgatt gatcttggtg atattttaat ccatctttta
    14821 acaccagaac acagaggaat ttataatata gaagaattac tagaaaatct taaaaaaggt
    14881 agggtttaaa aaggctaaat ttaattagcc ttttaatttt tagagattat caatatattc
    14941 tttaatttct tttttgattt tctctttttg ttcttttaaa gcttcttttt tagctttata
    15001 ctcagcctta ctcatataat ctttttgttc ttttaaagca tcaagttctt tttcgatttt
    15061 ttctacttct tgttctttaa gttttttagc ttctaacttt ttatcataaa acataggatc
    15121 tttagcacaa tcattttgta cttgttttaa agcaagctct aagcttaagg ttctagctgt
    15181 atcattatgc gctttagaaa aactgatttc tttattgata cgatcgattt ttctatcaca
    15241 ttcacttgcg ccaaaagcaa acgcacataa caaaagtaga acaagtattt ttttcatttt
    15301 taattccttt ttaaaataaa tttaaatcgc gaaatattat ctcatcaatt cttaagccta
    15361 gcttttatct cattaaacaa actaaatacc gtactttcaa gctcttttgc tctttctaaa
    15421 gaagttgctt caaagcgtgt gataagataa gggctggtgt tagatgcacg aagcaaagcc
    15481 catccatcgc caaaatctat cctagctcca tcaatttcac aaagactttt aacacctttt
    15541 aaagctcctt tttcaatctc tttttgaaat tcttccacaa gtttaaattt ttcttcttca
    15601 tttacatgaa ttttaatttc aggtgtagta tagagttttg gtaaagcttt aatcatactt
    15661 tctaaatcaa aacctttata aacaagttct aaggctctta aaaatgcgta aattccatca
    15721 tcataaccaa aatatctatg tttaaagaaa atatgcccac tcacttcagc agctaaatca
    15781 atatcttttt ctttcatcat ttttttgata ttagaatgtc ctgtttttcc cataaaaata
    15841 gttccaaatt tagccacttc atcaaaaaga tttttagaac attttacctc acctaaaatg
    15901 cgtggattag gaatattttt agcaaacaaa taacaaagct catctccaca aaatacatga
    15961 gttttactca aagcaaccat tctatcagca tccccatcaa aagcaaaagc taaagaataa
    16021 tcttgatttt gatttaaaaa ctctctaatc gcacttaagt tttcttcttc tgtaggatct
    16081 ggagcgtggt ttggaaactg tccatcaggc tctgcaaaca ttacatgagc ttttaaattt
    16141 aaagccttga ttaaaggctt tatcaccact ccagccgcac catttgtgca atcaacacca
    16201 aatttataat taaaatcctt taaaaagcta aattgctcgc acataaactt cacataaagg
    16261 cttaaaatat cgtatttttc tacttctaaa ttttcttcaa tctcatcatc caaatgctta
    16321 taaacttctt ttgaaaactc ttttaattcc tcgccaaaaa aactttcttt attgatagtg
    16381 attttaaaac cattataatc ttttgggtta tgagagcctg ttatcataac atttgcatca
    16441 aatttcaagc cctcataaag actaaaatat cccaatggag ttggtacaag ccctatatca
    16501 tagattttta ttcccgcttt gttaagtcca ctcactagat aattaaaaag ttcatttgca
    16561 ctatatcttg catcatagcc cacacttaca tttttacagc ctttatttag catggtttgt
    16621 cccaagcaaa aacctatagc cttaacactt ttttcattca gttctttgcc ataaagtcct
    16681 cttatatcat attctctaaa aatcacatct aacatttttt ttccttcaaa ttcatctctt
    16741 ctttgaccta aatttatcgt ttttctaaag caaatttgga tagaaaagaa atttttgcta
    16801 caattttaca ttaatttcac taaatgaagg aaaatttatg gatgaagaat tagaaaacga
    16861 agaaacgaaa aagaaaaaag gcggttcact tgtaattatt attgttattt tactttttgt
    16921 tttacttctt agtattatgg gagtgattgc ttggcttatt tcaagcagtt caagtgatga
    16981 aagtgaagtc aaagaagctc caaaagaaga ggcaaaagcc gataaaccta aggtttcagc
    17041 ccctactcaa cgaggtagtg attttgctaa tataggtcct atgtatccac ttgatccttt
    17101 taccctaaat ttacttagcg atagtggctc aagatatgta aaatgcacta tagaattaga
    17161 acaaaatagc gaacttttaa aacctgaact tgataaaaaa gtcccagtga ttcgtgatat
    17221 tattattcgt acattaacag ctaaaacttt tgaagaagta agtacacaaa aaggcaaaga
    17281 acgtttaaaa gatgagctag ttggaaaaat caatgaaatt ttaaccgatg gctttattaa
    17341 aaatgtttat tttacggatt ttgtagtttc ttaatgcgtg taggctgtga tatcatcgcc
    17401 atttctagga tagaaaaaat tcattctaga catggcaaaa attttttgga taaatttcta
    17461 agcccaaaag aacaaatact cattaaaaat ccagcaactc tagcaggtct ttgggctgct
    17521 aaagaagccg ctagcaaggc tttgggtgtt ggaatttgtg aattatgcag tttttttgat
    17581 attgaaatat caaaagatga aaaaaacgcg cctaaattaa aatattctca aaaaattaca
    17641 aaagatttta atatcactca aacttcccta agcatttctc atgataatgg ttttgctata
    17701 gccatagtgg ctatagtttg attattttcc tatagtttgc ttgtctaaat ttcttgaaag
    17761 tatgaaatcc accacaggtt gttctctttt atttgctctt ttacaatgat ctttttgaaa
    17821 aaaatctgtg atttttataa caatccttgc ccattttttg cgatttcttt cacgccacgc
    17881 atgagaagaa acgctctccc aagcatagcc attaaacaag cttgcattta caaaatgatc
    17941 taaagctcta acaccctgtc ttgctcgcgc ggtattaaaa aaagttccta taatcacgat
    18001 aaaaagatat cctaaaactg ctaaaggtac tatcgcacaa agcaggatag tccctgctaa
    18061 tttttctttt aagcttcctt ttaaggtgcg ttttacacga cgacgaaaat tggcgcgaat
    18121 tttaactcta actcttttca tagctttctt ttgctaaatt ttatcctcat accattagcc
    18181 gaacgcactg ttaaacgccc tactacatca ggtacaaaac cttcttcaag ttctagtttg
    18241 taagttttta aaatattagc caaaatcaaa atcgcttctt gcatagcaaa accttgtcct
    18301 atacaaattc tctcccctac cccaaaaggc aaataagcat cttttttgta ttctccttca
    18361 aaacgagaag gattaaatcc atgcggattt gtccaaaatt cttcatgtct gtgtatcaac
    18421 caaggagcaa tcaccacccc agaacctttt ttaataagct tatctctaac ttgggtatct
    18481 ttttttgcct ctcttgcaaa aaatccaaca ggaggataaa gccttaaaga ttctttaaaa
    18541 atatttgtta agtatttaaa ctgtcttaga tgcgaaattt caatagctcc accctgtaaa
    18601 acctgagtaa tctcctcata agctttttct tgctccttag gataaagact aagcaaataa
    18661 agcgtccaag tcaaagaact tgctgtggtt tcatgtcctg ctaaaaaaag catagccact
    18721 tgatctaaaa tttcctcaaa agaaaaacgc ttattcgtat ccgcatccac tactaaaagc
    18781 aaagatccta aaatatcttc aaattctgca ttatctgcca tatcatatct tggttttatg
    18841 atgtcactta aaacctgcct aatcacatct ccggccttag tacgcttacg atctcctaat
    18901 acataagaaa gccattttgg aaaacgaaac atacgacgca tggctgtatg cacgctttgc
    18961 tcttgaaaag tcacaaaggc gtttaagatt tttttacctt ttccctcatc gagttttgaa
    19021 gacataatgg tgcgaaaaat cacatcagcg gtaataaaag tcatagcttc atctacttcg
    19081 ataacagcat gatttggata cttgctaaaa cgatccatca tatctgccac agcttcactc
    19141 ataagattaa acactttatt gatacgagtc atttcaaaac ttggacgcaa aagttctctt
    19201 tgttttttcc aaacttcacc atttgtagta aaaatgctct ctcctaaaag cggacttaaa
    19261 agctcatgca aaaatgcact tttaggaaat tctctaacct catcaaccat cattctttta
    19321 acttctttag tgtcatttat aacataaaga tcaaaatttg gcatcttcac atagcctgtt
    19381 tgcattttat aactacgctc ataaaggcca tcaagccaag atctacgctt tagcaaaaaa
    19441 gttaaaagtg tagaagcctt gtttttataa ggttttggaa aaaagggaca ttcactcata
    19501 tttttacctt ttcttctaaa aatttaggca ttatgatgaa agaaaaaaaa tcataatcac
    19561 ctttaacact aatactataa agatataaaa agtgcgcttt gtttttatct ctttttattt
    19621 ttttatactc atgtttttca tataaagtgt gaaatttagc acttaaaaat gggggtgtaa
    19681 atttagcatt tacaccactc gtgcggaaaa aatccacttg aggaaaacat gctccatcaa
    19741 taatcgatgt gtaatcatac cattttaaat caaaccttga aacaaattca agcttctttc
    19801 taaattcatc tgcttttttt tgataactca ctaaaggtat gcattctcct aaagtaagaa
    19861 tttttaattt acaaagcaaa gataaatcta aatgttgtct taaaatatac tccaaaactt
    19921 ctatacaaac tatagttcca acactatgcg ctactaaaat aagctcataa tcttgtttgc
    19981 tttcgttttg ttttagcttc tccactataa catttgcaaa aagtttgatt ctttcttgca
    20041 tagtacctat ttttttatct tgccaagtag cacaaaaagc acaaattctt gctatccaaa
    20101 atacagctaa tttcttaccc aatttaaata aaaaatgatt tagtaaaaat cctaaaaaac
    20161 atcctatgat gatagctaaa gaaaaatgca tataattttg caaaaaagca aaacttccaa
    20221 aagctaaaac caaagaaaat agtaaagaaa ataacacata aaaaaaagga taataacctg
    20281 tgataagttg ataaatcgac tctttaccaa atttgataaa aagtcctgtg atagtataaa
    20341 ttctaaaaaa actataacaa tccgctaagg catctttgta attttccgac caatttttct
    20401 taacaatatc attccatgtt aaaaaatgat atttagtttg tactccttcg cacgaaattt
    20461 gaaaaaaagg aaattgctca tttttttcaa ttttacttaa atcagtctta atgttaaaag
    20521 catgagaata atcttttagg ttttttttaa ataaatcata ataaaatcta taacttttag
    20581 gatcatatcc tgctatataa aatacttccc tatccataca ataatttctt tttactttta
    20641 attataacaa ctttgcttta aaagctctct taatcaaagc tttttagtct tatttgtcta
    20701 aaaagaaatt tttataaaaa ttgccgttga attggttagt ttgtaaaaga tatttcttaa
    20761 aattacacac caaaacagga ttgggtttat aagcatgagc ttcacgccaa aaaaattgaa
    20821 gtttttttgg ataagataag ccttcaaaat cataaaaagc attgccacaa accttagtcg
    20881 gacagccttc taaaatagca ctaaggccta ctgttgaatt tatagtaata caacctaaag
    20941 cctttcttaa aagaactggc aagtgggtat catgaacata taaaaccctt ccctctacat
    21001 gatatttttg acttaaatcg tttatgagtt tagaataatt cttataaccc ctatccatgg
    21061 gatggtgttt aaaaactaga taagatttag ctcttgcatg atttgcaaaa gaaagtatgg
    21121 tttcctctat aaagtgctct atgctttttt tgtaatgata tttaatttgc gtatcgctat
    21181 aaacttgtaa aatcgccaaa aagtactttt tttctaaatt ataaatcttt tcatttagtt
    21241 ttttttctgt aatcttataa agatactttc tatacaatga tctaaaccaa aataaaaatt
    21301 caaaaggata taaagtacga tgatgaagtt tgttgttaaa aaatggagcc aaaataaaag
    21361 caaacaacca atacaaaaaa gcatcaaaag ccataaattt aaatccacct ggaatttctt
    21421 ttatgctttc tttggtaaaa atactttgag aaagataaaa atttttatca cgcggtaaag
    21481 aagaatttgc attcacccca tctttttcca aagtaataca ataaggcctt aaatatcctt
    21541 cctcaaaaat ccatacttca attcctaatt ctttagccac tttaatagcc ttagcatgga
    21601 taatacgaca atcattatac attaaaatag catcgatttt tttgctttga aaaaaatctt
    21661 tatagaaatt ttcaagatct ttttcatcac atttacacct tgttccacta ggatagaaaa
    21721 aaaaatctcc accgttaaaa ttgagtttaa aaactttggt ttggtttttt ttcattttca
    21781 ttgaaagatg atgaaaaaaa tttcccacag gcccttgcaa gagtaaaaca tttttaccgc
    21841 taaattcttt tttaatttta gtgctaaatc tcatttcttt gctaaaaatt cataaaatct
    21901 tcttattttt ctaagcataa aagttttaaa atctattgcc aattttatat gtttttttga
    21961 aaaataatct ttttgtaaat ttagcattat atctaaacaa acttcaattt cacataaagt
    22021 ttttgtttta ggatttatat atcttggata tgtgatcaaa gcacctgcta caagctcttc
    22081 taggcttagt tttcttgttc ttctttcgca tctatgttta tcttttgtta aaccccagcc
    22141 cgcataaaaa ggcataccat aagtaaaaac ttttttagct cttaaaagag catcaaaacc
    22201 acttgtagaa gtaatagtgt gaatttcatc agcaattttt atagcactat caatactgca
    22261 atcttttaca atctcatcac aaaattccaa gatgagtgtt tcatctttta aacccacacg
    22321 gttgccactt aacacatcag gatggggttt aaagatgata taagcatctt gatttttaga
    22381 acgcacctcc ttaagcaaat caagagtaga taaaccaaaa ccccctaaaa tcatcgaagc
    22441 atcatcttca acttgagcag gaattaaaat aatcttttgt cctattttag cattgatctt
    22501 taaattttta tgctttaagc cattatattt tgaaaagcgg ttctcaagta agatttttat
    22561 aatatttttt gccctattta gcatattttc atcaaaaatt tcattttgca aaagctcttc
    22621 taatttgctt actttatttg gatctatgta aagtccttta tcatcaacga ttaaagaaaa
    22681 agggcgcgta agatcagaac ctagtgaaat tgagcggata aaaccatctt caactaaaga
    22741 aactttagga gtaaaatgaa gcaaattctc atcttgtgct ttttttataa gagtagtttt
    22801 aaaagcgtta taatcaatcc ttttacccca aatgaaaaat ttatcatttt ctttaagttt
    22861 atatccagct aaagatttta aagaatttaa aaaaataatt tcattatctt tggtcttaaa
    22921 aaaaggcttg ataaaatgcc ttttccatag ggtaaaacct agcataaaaa atcgttcttt
    22981 ttgtattacc atgctataaa ttatccattg aaatatttat taattcgatt aattaaaaca
    23041 tgattatcca aggttttaat aacattataa cgtatatttc tttcaatttt atctgaaaat
    23101 tttaatcctt gcactttttg ttttttctct tcaaactcgt gtgttaattt tacttttttc
    23161 tcatcaaata tttctttaaa gctaagcttt aatttattat aatcttctga atcaggctta
    23221 tagctacgca aaattttgcc tggtaaattg catcattctc ttcttggagc ttcattttgg
    23281 aattaaaagc attttctaaa tcttgtatac ttaatttaaa taatttttca ctttctctgg
    23341 gaaatcttaa ggtctcaact gcagaacaaa cactcttttt agttttttca tcaatactct
    23401 cagcaataaa aaaagaataa gatatatcca cactatttac aaattcctgt aatgcttctt
    23461 gtgtagcctt tgaaagctcg ggttctatgg aaaaataatc tagattcact cgatttgtat
    23521 atttaagatt ttgcataata tcttgataaa tttgcccttt ttcttcttgt tctagaaaat
    23581 ccaaaacctg agtatcatca cagctcagca tcgaatcatc actacaagca acaaaaaaat
    23641 tgacaaaaaa taacaaaata ctcaacgttt taaaattcat ctaaaactcc ttgtaaatta
    23701 taaagagtaa ttatattatt ttgtaattat attactttta aaaaataaat gagacattaa
    23761 aaatcattcc aactttttgc aattaatcta taataaagat taaaaatttt ttcacaactt
    23821 taaaaaattt ctttatttca gcaccttctt cccaaatttt ctcttcaact cagatacatc
    23881 tttgaagtaa aacttgatat acccacactt ataccaattc ttactagcct taataaaagc
    23941 ttctcctaat ttataagtaa aacattcttt ttcttttaaa gcttcattat aatctggata
    24001 agtttctaaa gaaggtaagg ctaaatttgg atttttcttt attttaaatt tataagcttt
    24061 ttgttcttgt ttatgtgaaa taacaatact taatattata aaaggcaaag ataaataacc
    24121 taatacactt ttagaattca taattaaaaa tttgtcctaa tttataagaa agttgattct
    24181 ggattctagc ttttactctt ccaaattctt tataaaatgt taaatttttt atatcactat
    24241 cctgaattaa tatttgctct tgtagatttc tattttgcaa ttttactttc tcattttcca
    24301 ataacatttt ttttctttat ttactctgct attcatattc caatcttttt gaagatcaat
    24361 aattatcttt aaataattta aaaatttctg atgataatat cttttacaaa attttcaaaa
    24421 cattgcaaat cattatcaaa gggaatataa gcccaaggta tacttaataa tctaaaatat
    24481 gtttctaaat tatcatcact catcaaatca tcttccaaaa tacaacatcc tatattctga
    24541 aaaactggtt tatctataat tcttgctggc tgaagtaaag tttttttact aatatcataa
    24601 ggtttaggat agtatttttt acctttccaa gcaaaaaata actgagcaca aacatgagcc
    24661 tcattaacat acgaataacc atcccaatat ataccatcct ataaaatatg atttgataaa
    24721 tcatgcatta ccaaaataga ttttcttgat agaaatggta gcaccattaa aaaatctaaa
    24781 atttctcttg gagcaatatg aactgtatct attaatcaca tatctatatt tttacctatt
    24841 tttcgatatg atttgcaata aatccacctg tatagaaaac ccaattatct ctcaaatgag
    24901 gagctaattc atcaaccata tatcccatat tatgaattcc atcccaatgc attgaaaaat
    24961 aattaaatga ataaaaattt tgttgaatct aacattcctt cttgctctaa aaaatcaaga
    25021 attaaggcac tatttgcacc agatgcaaca ccaatctcta aaatcttttt gggcttatat
    25081 ttttttataa tatctaaaac aaattggaag acattaaaga atattttgag acatcaagca
    25141 taattttcct taaat
//
LOCUS       DAEDTT010000010        25132 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.010, whole genome shotgun sequence.
ACCESSION   DAEDTT010000010 DAEDTT010000000
VERSION     DAEDTT010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25132
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.010"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..406)
                     /locus_tag="KLC54_000317"
     CDS             complement(<1..406)
                     /locus_tag="KLC54_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3971 domain-containing protein"
                     /protein_id="HBD9176727.1"
                     /translation="MKKKILYIVVFFVVLILALFIVLKNGIVISSIQFDFLKLEQLYI
                     KLDKKLIVRAKNITINETQNSEISSQTHSSDNASTEILKITKNLKYLYAFVEEIDIQN
                     LNIKDNHVRILFKDNEFFIDNDLLFLKLTLQRQ"
     gene            321..1322
                     /gene="mltG"
                     /locus_tag="KLC54_000318"
     CDS             321..1322
                     /gene="mltG"
                     /locus_tag="KLC54_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HBD9176728.1"
                     /translation="MTIPFLSTINKANISTTKNTTIYKIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFIPQGSISQIITYLKQNKYQMSSIDKYILFFLGHPQSGWINIGTKDLN
                     RAEFLHKLTIAKAALQTITLIPGETSVIFLEQAAKQLELDKDMLLKEFQAQAPYDEGV
                     FLPETYKIPKGITENLLIQMLLNHAEISNKKTSEKIFGDYNPKKWHQYIIIASVIQKE
                     AANDNEMPIVASVIYNRLKKGMKLQMDGTLNYGIYSHVKVTPQRIRQDNSSYNTYKFT
                     GLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDKNTGVHIFSTNIDDHNKAINLQKGK"
     gene            1402..1833
                     /gene="flgB"
                     /locus_tag="KLC54_000319"
     CDS             1402..1833
                     /gene="flgB"
                     /locus_tag="KLC54_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HBD9176729.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDNKELQLAVTEEGHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            1843..2337
                     /gene="flgC"
                     /locus_tag="KLC54_000320"
     CDS             1843..2337
                     /gene="flgC"
                     /locus_tag="KLC54_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HBD9176730.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAVD
                     LLRG"
     gene            2344..2640
                     /gene="fliE"
                     /locus_tag="KLC54_000321"
     CDS             2344..2640
                     /gene="fliE"
                     /locus_tag="KLC54_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HBD9176731.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEIDDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            2647..4455
                     /locus_tag="KLC54_000322"
     CDS             2647..4455
                     /locus_tag="KLC54_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HBD9176732.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDECLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNNQTSTNN"
     gene            complement(4452..6221)
                     /locus_tag="KLC54_000323"
     CDS             complement(4452..6221)
                     /locus_tag="KLC54_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi symporter"
                     /protein_id="HBD9176733.1"
                     /translation="MQEERNSLKYFKFISWSIFTLVLIFILIRYDELANLLAGVAILL
                     IGMTNLGIGFKAFSGGLLEKILAKSTDTKIKSILFGTLSTLIMQSSTLVSIITISFLS
                     AGLISLGAGIGIIFGANLGNTASSWLIVGLTNIKISMLAIPLLIIGVLFFFQKDSVLK
                     GLGNIFIGIGFFFLGVDYIKSGFENFKHIIDLSRFDFAGFKGVFVFLGLGALLTGVIQ
                     SSTATMAIIVAALLAGQISLENSLAATLGTSVGGVVTAVLASLSTNIEGKKLAFANCI
                     FNFGIAFLIVLIFPYFIHFLNFLSIVLNIEDIALKVALFHTLFNLIGVVLFSFFTPQI
                     VLFLNKIVKAPKDKNKDKPLYLDSSLVKFSDTAIKALRKESEHLYNNTYAIVAHAIGF
                     SRKDIQSDKSFKEILENKKWFSKNVDLDYLYQTRIKVLFEAIIDFSTKAQVYINDETK
                     NHKIFTFKMAAKNLAETTKNLKIIQANIKKYSSSSNEFLALEYNKIRSNLGELLRSIE
                     ELRVVEDREKLYLIIKNLQKGKEILKEIDTLTLGNVEHLISVRKITTAEGISILNDTT
                     FAAKIAEELIGAVEVIFSKDISN"
     gene            complement(6225..6659)
                     /locus_tag="KLC54_000324"
     CDS             complement(6225..6659)
                     /locus_tag="KLC54_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176734.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDEQTLLEPIKMDIYPKF
                     CDLIDEKIREFKENVQNANLALKNSDQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEVENLREFLMNEFEKLKG"
     gene            complement(6659..6976)
                     /locus_tag="KLC54_000325"
     CDS             complement(6659..6976)
                     /locus_tag="KLC54_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HBD9176735.1"
                     /translation="MIENIPASLWTKQDLNAYQIFDVRTPLEWEEGILPNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAERLGLESINLDGGMLAL
                     KGY"
     gene            complement(6973..8799)
                     /gene="htpG"
                     /locus_tag="KLC54_000326"
     CDS             complement(6973..8799)
                     /gene="htpG"
                     /locus_tag="KLC54_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HBD9176736.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEINDANK
                     EEQGTSITLYLKDDEFANTYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKVEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVAINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIINKAFS"
     gene            complement(8872..9240)
                     /gene="crcB"
                     /locus_tag="KLC54_000327"
     CDS             complement(8872..9240)
                     /gene="crcB"
                     /locus_tag="KLC54_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HBD9176737.1"
                     /translation="MLNTLLVVGFGGFIGAILRMFSINLVNKFFPYSISLGTLFVNVL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYLHFALN
                     IILNVFLCLFAAWLGFIIFK"
     gene            complement(9234..9926)
                     /locus_tag="KLC54_000328"
     CDS             complement(9234..9926)
                     /locus_tag="KLC54_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HBD9176738.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVVFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSVKILDTKSFSASSGVLKIICMDLVDTNDDKWLENTRKKM
                     QELLDQERAKLC"
     gene            complement(9907..11103)
                     /locus_tag="KLC54_000329"
     CDS             complement(9907..11103)
                     /locus_tag="KLC54_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HBD9176739.1"
                     /translation="MKILLTLIFSVVVLFGRGEISVFGGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNDEYPSRVYVGEVFPITIYARTTENTKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLSNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKDSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYTLWFLAVLFGALFVWRKNYIILALAVVCFALSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(11100..11747)
                     /gene="purQ"
                     /locus_tag="KLC54_000330"
     CDS             complement(11100..11747)
                     /gene="purQ"
                     /locus_tag="KLC54_000330"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HBD9176740.1"
                     /translation="MKVAIIRFPGTNCEFDTAYAFEKLGVKTQIVWHEEKEFDTDLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQNLRVVSNDNAFLKNFKKDEIINLPIAHGEGNYYADEATLKELQDKDL
                     ITLKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDIGLKMLKGFLF"
     gene            complement(11749..11994)
                     /gene="purS"
                     /locus_tag="KLC54_000331"
     CDS             complement(11749..11994)
                     /gene="purS"
                     /locus_tag="KLC54_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HBD9176741.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSIIEDYELVIEKE"
     gene            complement(12003..12713)
                     /locus_tag="KLC54_000332"
     CDS             complement(12003..12713)
                     /locus_tag="KLC54_000332"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HBD9176742.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(12715..14049)
                     /locus_tag="KLC54_000333"
     CDS             complement(12715..14049)
                     /locus_tag="KLC54_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HBD9176743.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISDLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            14167..14457
                     /locus_tag="KLC54_000334"
     CDS             14167..14457
                     /locus_tag="KLC54_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HBD9176744.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKVVLKEHLAHCMVHAVEENDIQSIEELNKAIDMFMK"
     gene            14569..17142
                     /locus_tag="KLC54_000335"
     CDS             14569..17142
                     /locus_tag="KLC54_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HBD9176745.1"
                     /translation="MANIQNFLTDNMLSNLESAASLAIHSKNNEVAPLHLLWALSVDS
                     TSILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPTKEILAQFLDLREFQKELESLRAGRKIDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDVV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(17170..19101)
                     /locus_tag="KLC54_000336"
     CDS             complement(17170..19101)
                     /locus_tag="KLC54_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HBD9176746.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYVAYLFTSADTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPERTITRKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTASLGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDTAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKANMKFNESEIIF"
     gene            complement(19098..19649)
                     /gene="maf"
                     /locus_tag="KLC54_000337"
     CDS             complement(19098..19649)
                     /gene="maf"
                     /locus_tag="KLC54_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HBD9176747.1"
                     /translation="MLILASSSISRANLLKTAKIDFRQVSFDYDENLDKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKAKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITHQVGNLSTALGLDIQTLKAYL"
     gene            complement(19649..22177)
                     /gene="alaS"
                     /locus_tag="KLC54_000338"
     CDS             complement(19649..22177)
                     /gene="alaS"
                     /locus_tag="KLC54_000338"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HBD9176748.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEFLKLPKDRLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGEEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELLMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDAGWVMLKNTPFYATSGGQSADSGFMAKREVL
                     DTQKFFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALSKEELENIEKRVNEMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGIKKLKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDVPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKINEALKQSLETIEKAL"
     gene            22292..23365
                     /locus_tag="KLC54_000339"
     CDS             22292..23365
                     /locus_tag="KLC54_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HBD9176749.1"
                     /translation="MNFINLQAQYLAYKDEINAEIESVLSSSSFIGGAKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRALDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFEAVQKAITPKTKAVIAVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQTYNANLKNCQIPQIDPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            23370..24236
                     /locus_tag="KLC54_000340"
     CDS             23370..24236
                     /locus_tag="KLC54_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HBD9176750.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNQNNDIIIIATPTNSHLAIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSVKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQANHLASTSD
                     AYKVQEILERFA"
     gene            24233..>25132
                     /locus_tag="KLC54_000341"
     CDS             24233..>25132
                     /locus_tag="KLC54_000341"
                     /EC_number="4.99.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HBD9176751.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCNKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNESDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLISCPNDSDEFMEFILNSIN"
BASE COUNT         8880 a         4112 c         3554 g         8586 t
ORIGIN      
        1 tttgacgctg taatgttaat tttaaaaata ataaatcatt atctataaaa aattcattat
       61 ctttaaataa aatacgcaca tgattatctt ttatatttaa attttgtata tcaatctctt
      121 caacaaaagc atatagatat tttaaatttt ttgttatttt taaaatctct gttgaagcat
      181 tatcagaaga gtgagtttgt gatgaaattt cggaattttg agtctcattt atagtgatat
      241 tttttgctcg tacaattaat tttttatcta atttaatata taattgttcc aattttaaaa
      301 aatcaaattg gatactagag atgacaatcc catttttaag cactataaac aaagctaata
      361 taagcacaac aaaaaataca acaatatata aaattttctt tttcatacgc aacttctttt
      421 tgatatttat tttggggatt ttttattatc taactcagcc tttaaaaagc aattctgtgg
      481 tatttattcc ccaaggttca atttctcaaa ttataacata tttaaagcaa aataaatatc
      541 agatgagtag tattgataaa tatattttat tttttttagg acaccctcaa tcaggctgga
      601 tcaacatagg tacaaaagat ttaaataggg ctgaatttct acataaactc actattgcta
      661 aagcagcgct tcaaaccatt actcttatcc caggagaaac aagcgtaatc tttttagaac
      721 aagcagccaa acaacttgaa cttgataaag atatgctttt aaaagaattt caagctcaag
      781 ctccttatga tgaaggagtt tttttaccag aaacttataa aatcccaaaa ggcattacag
      841 aaaatctact catccaaatg cttttaaacc atgctgaaat ttccaataaa aaaacttctg
      901 agaaaatttt tggtgactat aatccaaaaa aatggcacca atatatcatc atcgcttctg
      961 taatacaaaa agaagctgct aatgacaatg aaatgcctat agttgcaagc gtaatttata
     1021 atcgacttaa aaaaggtatg aagcttcaaa tggatggaac tttaaattat ggaatttact
     1081 cccatgtaaa agttacccca caaagaataa gacaagataa tagctcttat aatacctata
     1141 aatttacagg attgcctaaa gaagcggttt gtaatgtttc tttagctgct attcgtgcag
     1201 ctatttttcc tttaaagaca gattatttat attttgtgcg tgataaaaat actggagttc
     1261 atatttttag cacaaatata gatgatcaca ataaagccat aaatttacaa aaaggaaaat
     1321 aattttgata tttttataca aaatagttaa attggaacag tatttgcttg ttaatattaa
     1381 aaattataaa aaggataaaa aatgattaac ccatttaaat caaaagaact ggtcactggt
     1441 gctttagcgg gtagaaatct aagaaatcaa ctcatcaatg ccaatcttgc aaatgttgat
     1501 actccttttt ataaagcaag agatattgaa tttgaaacag ctttggtaaa tcgtgcaaat
     1561 gaaattttca aaaaaaatga taataaagaa ttgcaattag ccgtaactga agaagggcat
     1621 caaaaacctt ggaaattccc tgatcctagt aaatctacta tttacttaag agatggtcat
     1681 ttagcaagaa atgatgcaaa tactgttgat ctagatgtag aaaccacaga aatgagtaaa
     1741 aatacagtta tgataacagc tcttgatgga gttttaagaa gacaaagcaa tatctttagt
     1801 tctatacttg atgcaagctc taaattaagt taaaggtaaa ttatggcata cttaagtgat
     1861 tttgatatta gtggttatgg tttaagtgct caacgtttca gaatgaatgt tattagctct
     1921 aatatagcta atgcaaacac tacaagaaca gctgaaggtg ggccttatag aagacgcgaa
     1981 gtgatcttta aagcaacaga ttttgataag cttttaaatg agcaaattaa caaagataat
     2041 aattttttaa aatatgaaaa tcctttaaat gatccaagtt cgccagaaga agctaaacct
     2101 gctattcaaa gtgttgtagt ggataaagtg gtcagagatg acaaagattt tcgtatgaag
     2161 tatgatccaa gccatcctga tgcaaatgct gaaggttatg tagcgtatcc aaatgtaaac
     2221 cctgtcattg aaatggcaga tttgattgaa gctacaagag cttatcaagc caatgtaagc
     2281 gcttttacaa gtgcaaaaac tatagctcaa agtgcggttg atttattaag aggataataa
     2341 aaaatgaaca atattaatga tttaagatta aataataata tttcaaatac caacaaaagt
     2401 caaaattcca caggaattgg tgatgaattt gccaagatgc ttaaaaatga aatcgatgat
     2461 ttaaacaaag cacaagaaag tggagaagct gcaatgacag acattgccac aggacaagta
     2521 aaagatttac atcaagcagc tatagctatc actaaagctg aaagcagtat gaaatttatg
     2581 ctagaagtaa gaaataaagc gatcagtgct tataaagaaa tcacaagaac tcaaatttaa
     2641 accctaatgc aagaatataa aaaaaatagg gtttcaaaag ttgcctttgc ctactgcatg
     2701 gcacttttgt ttatgattat ttttatcagc tctacttttt ttcttacatc aaaacgtcat
     2761 atacctaaca ctgaaaaaga tcaatacgct cttgctctaa gaggatcgat tataaccaaa
     2821 gataatttta ctatcacaag ttctaaacaa atttatcgcg ctgaaattga tcttagaagc
     2881 attaacaaag ataaatttga tctattttta aagctttttc aaatttatag tggaataagt
     2941 aacgatcaag tagcagatat taaaaaaaga atgcaaaatc aaaaaaaacg ctcttataat
     3001 tttgttcttt tgcaaaactt agattccaag caagcaagct atcttaaaga ccttgctaaa
     3061 aaactttata tacaaggttt tttcaaagct tttacaaaca actctggaag agttgaaaca
     3121 agaggattaa atatcatcga acatgaagaa gatagaattt acatgtcaaa agattctttt
     3181 actcctatta tcggttatac caaaatgata ttagatccag aaagtggaat tttaaaaaat
     3241 ataggagtta aaggtttaga aaaatactac gatgaatgtc taagccctgt tcaaaatgaa
     3301 aaaattcaag gacttaaaga tataggtgga aatattattt taaatctaaa ttcactacaa
     3361 caaaaaaaga tcaatggttg tgatttatat ttaaatcttt ctttaaaact gcaaaaaagt
     3421 atagagaaag ctatagatca aagaaatgag gatttaaaag ccaatgaaat catagttgga
     3481 gtaatggaaa gcaaaacagg aagaatttta gctctagcaa gctcaaggcg ctatgatccg
     3541 caaaatcgtg gaaaagatct atcagttctt aatgcaagcg ctatagaata cggttatgaa
     3601 gcaggttctg ttatcaaacc ttttatcttt acaacagcct taagacttgg taaaataaaa
     3661 atggatgaag tgattaatac ttatggcggt tcttacaagc taggacgttt taccatcaaa
     3721 gacgatcaca aaatggacaa aatgactatg gaggaagtta taagatattc ttcaaatata
     3781 ggcatgatac aaattgccaa aagacttaac aatatagaaa tcgtatcagg acttaaaata
     3841 tttaaatttg gcgaaaaaag tggtattgat ctaccctatg aacaaaaagg agaaattcca
     3901 aatcctaagc gcttaagaga tatagaaaaa tctgttttaa gttatggtta tggacttaaa
     3961 acaaccttta tacaactcct tgcagcttat aatgttttca acaatgatgg gttttatatc
     4021 acaccacgtt tagctgaaaa attctatcaa aatggacgct ttacaaatct tgatgatgat
     4081 gtaaaaaaag aaaaaattct ttctagcgaa gccgctaaaa cgatgcaaaa tgttcttata
     4141 aatgttatag aaaaaggaac aggaaaaaag gcaattacac aaggtattat tgcaggaggt
     4201 aaaacaggaa cggcaagaat agccgaaaga caaggttata cctcaaatcg ctacaatgca
     4261 tccttttttg gttttgcaaa tgatttaaat cacgcctata ccataggagt tctcgtaaga
     4321 catcctacta aaccttatag ttattatgct gcacaaagtg ctttgcctat gtttaaagat
     4381 gttgttgata ttttaatcaa tgaagaattt ctaacgccta tacaagacaa taaccaaact
     4441 agcacaaaca actagtttga tatatcttta gaaaatatca cctcaacagc acctataagt
     4501 tcttcagcaa tcttagcagc aaaagttgta tcattaagta ttgaaattcc ttcagctgtt
     4561 gtgatttttc ttactgaaat aagatgttca acattgccca aggttaaagt atcaatttct
     4621 tttaaaattt cttttccttt ttgaagattt ttaataatca aataaagctt ttcacgatct
     4681 tcaaccactc taagctcttc gatacttctt aaaagctctc ctaaattcga tctaatttta
     4741 ttgtactcta aagccaaaaa ttcattagaa gaactagaat atttcttaat atttgcttgg
     4801 ataattttta aatttttagt tgtttcggct aaatttttag ctgccatctt aaaggtaaaa
     4861 attttatgat tctttgtttc atcgttaata taaacttgtg ctttagttga aaaatcgata
     4921 atagcttcaa aaagaacctt tatcctagtt tgatacaaat agtccaaatc cacattttta
     4981 ctaaaccact ttttattttc taaaatttct ttaaaacttt tatcactttg tatatcttta
     5041 cgactaaaac ctatagcatg agcaacaatt gcataggtat tgttataaag atgctcgctt
     5101 tctttcctta aagctttgat ggctgtgtca ctaaacttaa ccaaactact atcaagatat
     5161 aaaggcttgt ctttattctt atctttagga gcttttacta tcttatttaa aaaaagaaca
     5221 atttgaggag taaagaatga aaaaagcaca acaccaatta aattaaacaa agtgtgaaat
     5281 aatgctactt tcaaagctat atcttctatg tttaatacaa tggataaaaa attaagaaaa
     5341 tgtataaaat aaggaaaaat aagcactatt aaaaaagcta taccaaaatt aaaaatacaa
     5401 tttgcaaacg ctaatttctt tccttcaata ttggtactta aagaagctaa aacagccgtt
     5461 acaactcctc caacactagt acctaaagtt gctgctaagg aattttccaa actgatttgt
     5521 cctgcaagta aagcagcgac aataatagcc attgtagctg tgcttgattg tataactcct
     5581 gtaagcaaag cacctaatcc taaaaaaaca aaaactcctt taaacccagc aaaatcaaaa
     5641 cgagaaagat caattatatg tttaaaattt tcaaaaccac ttttaatata atccacaccc
     5701 aaaaagaaaa atcctatacc aataaaaata ttacctaaac cttttaaaac actatctttt
     5761 tgaaagaaaa ataatactcc aataatcaaa agtgggatag ctagcattga aattttaata
     5821 tttgtcaaac caacaatcag ccaagaactt gccgtatttc ctaaatttgc tccaaaaata
     5881 atccctatgc ccgcacccaa agaaataagc cctgcgctca aaaaagaaat cgtaataata
     5941 gaaactaaag ttgaagattg cataattaaa gtacttaaag taccaaaaag tatacttttt
     6001 atctttgtat cggttgactt cgctaaaatt ttttcaagca aaccaccact aaaagcttta
     6061 aaacctatac ctaaattagt cattccaata agaagtattg ccactcctgc taaaagattg
     6121 gcaagctcgt cataacgaat taaaataaaa atcagaacta aagtaaaaat actccatgaa
     6181 ataaatttaa aatattttaa agaatttctt tcctcttgca atgcctaacc ttttagtttt
     6241 tcaaattcat tcatcagaaa ttctcttaaa ttttcgactt cttcttcgcc tttttctaga
     6301 tactcaagca ataaattttc taattccttt aaaaaagaaa aaagttcatt ttgccagata
     6361 ctatcgtttt tattgcttaa attcatggtt tgtatgaaag tcaactctct gcttaaatcc
     6421 ccaagttttt ctaaaaattc atctttttga tcagaatttt ttaatgctaa attagcattt
     6481 tggacatttt ctttaaattc tctgattttt tcatcgatta aatcgcaaaa tttcggataa
     6541 atatccattt taataggctc taaaagggtt tgctcatcta tatttaaagt aagcttttta
     6601 acagcaaaat aaagagctaa aaaagacaaa gctgctatga gtaaataaat tcctagcatt
     6661 aataaccctt aagagctagc attccgccat ctaaattgat actttcaagt cccaatcttt
     6721 cagctataaa ttcagctgca accatgcttc tatggccact acgacaaata aaagcaagtt
     6781 ttttactttc atctcttttg ctttgaaatt catctaaaaa tttagcattt aaaagccctt
     6841 gattatcata taaagccaca cattgcgcat taggtaaaat accttcttcc cattctaaag
     6901 gagtacgcac atcaaaaatt tgatatgcgt ttaaatcttg ctttgtccaa agacttgcag
     6961 ggatattttc tatcatgaaa aagccttatt gataattttt gtaaggcttg cattaaattc
     7021 agcaggatta tccactccca taccttcgct tagttttgcc atatttaaaa ctagggttgc
     7081 tatatctgca ctaaaacttt cgttgttttt aagacctgta aaaatagcgt gttttggatt
     7141 gatttctaaa ataggtttga aattttgctc ttgacccatt tgttttaaga gttgttgcat
     7201 agcaaaatca ggtttatttt tatcataaac tatacaactt gggctatctt tcaaacgact
     7261 ggttagtctt acatcttcaa cttgatcttt tagaagttct ttaaatttag ctacaagtgg
     7321 agcaaaagta tttttttctt catcacttag ttcattttta tcttctactt gattaatggc
     7381 tacaaatttc aaaccttcaa attctagcat aggagttact aaagaatcaa tctcatcatc
     7441 catgagtaaa acttctatat ttttttgttt atactcttca agcaaaggag aggttcttaa
     7501 taaactttca ttatttcctg ctatataaaa aatttccttt tgttcgcctt gaaggtcatt
     7561 tttatactcc tctaaagagc gtaaattttc acctttagtg cttttataaa gcataagttt
     7621 taaaagacta tctttttctc cgccaaaacc ataaagtcct tcttttaata ccttaccaaa
     7681 ggttttaaag aaagataagt atttttcttt atcattgttt ttgagttttt caagttcgcc
     7741 taaaatcttt ttaacgctag cttctttaac gccttttaaa atttgatttt cttgtaaaat
     7801 ttcacgactt acattaagtg gtaaatcttc tacatcgata atcccacgca caaaacgcaa
     7861 ataagttggt aaaagttctt tatcgtcatc gctgataaat acgcgtttta cataaagttt
     7921 taagccgctt tgataatcca cacggaataa atcaaaaggt gcattttgtg gtatgaaaaa
     7981 taaagaattg tattctaatt ttccttcact tttagtgtga agataaagta aaggtttgtt
     8041 tgaatcatga aaattttgct cataaaatct ttcataatct tctactttaa ggcttgattt
     8101 ttgcattctc cataaagcgt tggctttatt gatttgagaa attttaagtt cagtttttcc
     8161 ttcttcttcg ccttctttag caggagtaaa ttcttctttt tccatgaaaa ttggaaattg
     8221 aatatgatta gaatattttt ctataatgct ttcgatttta taagtattag caaactcatc
     8281 atcttttaag tataaagtaa tgcttgtgcc ttgttcttct ttgtttgcgt cattaatctc
     8341 ataaccattt gcatcagaac tccaaagata agctttatca tctaaagctt ttttacttaa
     8401 aacttcgatt ttactagcca ccataaaagc agaataaaaa cctactccaa attgtcctat
     8461 gagttgagaa tcttttttag catcaccact taaattttct aaaaaacttt tagtaccgct
     8521 ttttgctatg gttccaaggt tgttaataag atcatcttta tccataccta taccattatc
     8581 actaatgctt aaagtttttt tatctttgtc aattttgatt tcaattttag gttcaaattt
     8641 taagctttta tatttatcat cacttacgct caaaaaatta agtttgtcta aagcatcgct
     8701 tgcatttgaa ataagctctc ttaaaaaaat ttctttatta gaatataaag aatgtatcat
     8761 aagctgtaaa agctgattga cttcggtttg aaattgcatt ttaatttcct ttgtaatttt
     8821 ttaaagtggt attttagcaa aaaatacaaa ttctaaagta aatttaaaga tttatttgaa
     8881 aattataaag ccaagccatg cggcaaataa gcaaagaaag acatttaaga taatatttaa
     8941 cgcaaaatga agataatttc cactttgcaa aagaagtaaa ttttgataag aaaaagtaga
     9001 aaaagttgta aaagctccta aaaaacctgt acttataaag cttttaagta aaggagataa
     9061 acctttattt tgtgcataag aaaacaaaag tcctatgata aaagaaccca aaacattaac
     9121 aaaaagagtt ccaaggctga tagaataagg aaaaaattta ttcactaaat ttatagaaaa
     9181 cattcttaag attgctccta taaatccccc aaaaccaaca actaaaaggg tatttagcaa
     9241 agcttagctc tttcttgatc gagtaattct tgcatttttt ttctagtgtt ttcaagccat
     9301 ttgtcatcat ttgtatcgac taaatccata caaatgattt taagcactcc gctgcttgca
     9361 ctaaaacttt ttgtgtctaa aatttttaca gaatctacaa ttaaaatagg ttgaacttta
     9421 agatttaatt tttcacttaa aatttttgct ccactttgaa atttaagcat tttttcattt
     9481 ttagatctag ttccttctgg aaaaatagcc aaaaccctat cttcactaat tctttctttt
     9541 gcttctttta aaactcgtac taaatcacgc ggattttttc tatctataca aagaagtttt
     9601 ggttttttca tggcgacttt gaaaatagga atttctccta attctttttt ggcaatccag
     9661 cataaatttt taggatataa ttcttctaaa gcgatgatat ctaaagcact ttggtgattc
     9721 attaaaatca tctgagcttg tggattaaaa gtaccaatga tttcttgttt ataagagata
     9781 gtatatcttt gaaatttagc ccaaattttg cggattttcc aaagtgtgtt ttgagatttt
     9841 gtaaagcaaa aacaaaaaac taccaaagca acgcttaaaa caaaaaaaat ccaaaaataa
     9901 agagctttaa tttttttgta aatcatcttt attaacccaa cctatttttc catcagaaaa
     9961 cagtacttta atataatttt gtcgtttgcc taaaacttct actttttcat ctgcatttgc
    10021 cgtataaaaa taagttgaag gctctgtagg taaaatttta gccctagaac cagccttgat
    10081 aattgcattt tgagtattgg tatctacaag aaaactaagt gcaaaacaaa caactgccaa
    10141 agccagaata atgtaatttt ttctccatac aaataaagct ccaaataaaa ccgctaaaaa
    10201 ccataaggta tattgtttat aaatatttaa gtctttattt acaggattta aatcactctg
    10261 agtgctgatc tcatcgtcac taatttttag ttttaaattt atattttcaa gctttttact
    10321 gtccttattg aaatacgaaa attcaaaatt tgttttactt aatggcaaaa tagcataata
    10381 aaaagcacta gaagcattaa aatccccttt taaattttca ataccttgct tttgaattcc
    10441 ttctataaaa aagcttttaa gatttgtatt ggttgcgttt agttctacca tcataatgat
    10501 attagcatca tcaaaataac tcgctttaac ttttttaatt tccaaagaac ttgccacaag
    10561 gtgtgaaaaa tctttattgg ataaagtatt ttcaaatttg ataggattaa gattgatatc
    10621 ggcctcttga aaagcttcat tatttctaag aagtttgata gaaattttac tcaaactagc
    10681 atttgaattt ttggcttcaa accataaagt tgttttatat tcgttattga taaattccca
    10741 ttttgcatct ggatttaaaa aagataaatt agttttttct acgcttatgt taaaatcaaa
    10801 ttttgtattt tccgtagtgc gagcatagat cgtaatagga aaaacttctc caacatatac
    10861 cctgcttgga tattcatcat ttgtaagaac caaactccct ttagctacaa aaggatcatc
    10921 tacattgctt tcaaagtcat tgttttcatc acttggcgga atattttgat aaattttttg
    10981 ttcttcttgg ggtaattttt gtaattcttt ttgcatattt tcatcttggc cgccaaatac
    11041 agaaatttca cccctgccaa acaatacaac aacactaaaa attaaagtta ataaaatttt
    11101 caaaataaaa agcctttaag cattttcaaa cctatatcat tacctaggac tttttcacaa
    11161 gcacgctcag gatgtggcat gagtccaaag atttttttgt tttcatcaca aattcctgcg
    11221 atatcaaata cagaaccatt tggatttggc tcgtatttta aagtaataag atctttatct
    11281 tgcaattctt ttaaagtagc ctcatcagcg taataatttc cctctccatg agcaattggt
    11341 aaattaataa tttcatcttt tttgaaattt ttcaaaaagg cattatcatt agaaactact
    11401 cttaaatttt ggttttttga gataaaacta agattgttgt tatgcttcat tgcacctttt
    11461 aaaagaccgc tttcaagtaa aatttgaaaa ccattgcaaa tacctaagat atatcctccc
    11521 ttttttgcat gattaaaaac accttgcata gcaggagcaa gttttgcaat agctgcacat
    11581 cttagataat ctccataaga aaatccgcct ggcaaaacaa ctaaatctgt atcaaattct
    11641 ttttcttcat gccaaacaat ctgcgttttt actccaagtt tttcaaaggc ataagctgta
    11701 tcaaattcac aatttgtccc tggaaatcta ataatagcaa ctttcatttt actctttctc
    11761 aattacaagc tcataatctt caatgatgct atttaccaac aactcttcac acattttttt
    11821 tacttgttct ttggctaatt tttcatcttt ctcatcaaga gaaattttga tttgttttgc
    11881 tatttttact tctttaacac tattaaaatt taaagaatgc aaagcttttt ccaccgcttt
    11941 gccttgtgga tctaaaaccc cattttttaa agaaatattt acaataactt ccatattttt
    12001 ccttaattta atattctttt taaaacttct tcataagcca tttttacatt acctagatct
    12061 tgacgaaatc tatctttatc taatttttca ttgctaaatt tatcccaaaa tctacaacta
    12121 tcagggctta tttcatcagc taaaacaagt tcattatctt tagttaaacc tagttcgatt
    12181 ttaaagtcaa tcagccttaa atttttattg tcaaaaaatg gagttaaaat agagttaatc
    12241 tttctagcca tatttttaat ttcactaatt tgagcttcat tttgcactaa atttaaaatc
    12301 aaacaatgct catcattgat aaaaggatcg cctaaagcat catctttaag acaaaattcc
    12361 accaaagcaa aaggtagcac agtgccatct ttaatgccca gtctttttgt aagagaacct
    12421 gttgcaacat tgcgtactat aacttcaata ggaacaattt tacatttttt aaccacttgt
    12481 tctgtatcgc ttatagtttc taccaaatgg gttttaatcc catttttttc gagcaaatga
    12541 aaaatttcag tactgatttt acagtttaat gcgccttttc cactttcatt gcctcttttt
    12601 tctgcattaa aagcagttaa atcatcttta aactcactaa ttagtaaatt ttcatcatca
    12661 gttttgaaaa gttttttacc ttttccttcg tagagcattt ctttttttgt cattttattg
    12721 tccttgtttg atatttaaaa ttttaatagt atcaatagct gattttaact gtgcgtcatc
    12781 attgatttgt ttttgactga ttagattttt attgtcttta ttttcttgtt tatcttcttt
    12841 tttattttta tctatttttt caagctcact ttctaaatgt tgttttaagt cgctttcttt
    12901 tatagaaaaa ccatcttctt gagtatttac tttacctgga aaaacttcaa tatcaggttt
    12961 tacacccact gcttgaatag tacgcccgct tggaagataa tatcttgcaa tagtaagcct
    13021 taaagcttca gttttattaa taggtatgat ttgctgaaca ctaccttttc caaaagtatt
    13081 ttcacccaca ataacaccgc gtttaagatc ttgtaaagct ccacttacaa tttcacttgc
    13141 actagcactt ccaccattta caagcacaac caaagaagca ttagaaattt tgtttttagg
    13201 atcggcttta tattcttgat tttcacttgc gatgcgtcct ttttgagaaa caataacacc
    13261 tttatctaca aataaattta caagtcctat ggcttgattt aaaagtccac caggattatt
    13321 tctaagatct aaaataactc ctttaacatt aggatatttt ttaagttctt tacttgccac
    13381 atctacaaca tttttatcaa aatttgtaac cctaagataa agaatgtttt cattttctat
    13441 catttttgca taaacacttt ctatcttaat aatttctctt gtaagtgtaa catcaaaagg
    13501 ttttgttgca ccttttctaa aaatggttaa agtgatttga gtttttggct taccacgcat
    13561 tttatctaca gcatcattga gattaattcc taaagtggcc tcatcattaa tttttaaaat
    13621 aatatctcct gattttatcc ctgctttatc tgctggtgtt ccttctatag gagaaacaac
    13681 tgttaaagcg ccatctttca tacctacggt tataccaagg ccaccaaatt cgccattggt
    13741 ttgaattttc atatcattaa aatctttttc atttaaaaaa gaagaatgcg catcaagatt
    13801 gcttaaaagt cctgataaag atttatccac caaatcgctg atattttgat catccacata
    13861 gtattgctct actatggcaa gagtttttgt aagcttatct aaagcttcta ggcgtttttg
    13921 aacctgctct tctttttgat caactttagc ttgtaaatga cttgttaaaa atagacataa
    13981 aataaaagta gtggcaaagc ctgcaagacc cgcaaaaaat cgttttgttt tcaaaataag
    14041 ctccatcatt gagttttagt ttaaagagta aattttaata aaaattgctt aaaacttcgt
    14101 aaataaattt aaattcttaa aaatatgtta aaatagacta aaaattccaa aaagaaagtt
    14161 aatacaatgt gccaagaaaa acatactcat acacattctc aaaaacatct taaagcagtt
    14221 tgcaatcgtc taagtagaac catagggcat ttaagcgcta ttaaaagaat ggttgaaaat
    14281 gacaaagact gtagtgaaat tttaatccag cttgctgccg taaaagccga agttaacaat
    14341 actgcaaaag tagttttaaa agaacattta gctcattgta tggtacatgc tgtagaagaa
    14401 aatgatattc aaagtataga agaattaaac aaggctatag atatgtttat gaaataatct
    14461 aaaattagtc atttgtccta ttatttaaaa aattttactc aattaacttg acattatatg
    14521 actaaagtta tataatagca agtatataaa ctaaataaag gataaaacat ggcaaatata
    14581 caaaattttc taactgataa tatgctttca aaccttgaaa gcgcagcatc tttagctata
    14641 cattctaaaa ataatgaagt tgcaccttta catcttttat gggctttaag cgtagatagt
    14701 acaagtattt taaatcaaat tttaaataaa ttaaatattt ccaaagaagc cttagaactt
    14761 gaaattaaaa gcagaatttc aaaacttgca acgagttcaa atgtaaaccg tgaaaatata
    14821 cgcttttcca atgaacttat aaattcatta gaaaatgcta aaggattaat gagtgctaat
    14881 ggagatagtt atttaagtgt ggatacttgg cttataagtg aaagtcaaaa aagtcctact
    14941 aaagaaattt tggcgcaatt tttagattta agagaatttc aaaaagagct tgaaagtcta
    15001 agagcgggac gcaaaatcga tagcaaaaca agcgatgaaa ccttagacag cttaaataaa
    15061 tttggtatag atttaacctt aaaagcaagc gaaggtaaac ttgatcctgt tataggcaga
    15121 gaagaagaaa tcgaacgttt aatgcaaatt ttaatacgca aaaccaaaaa taaccctata
    15181 cttttaggtg aaccaggcgt aggaaaaaca gctatagtgg aagctttagc acaaagaatt
    15241 attaaaaaag atgttccaaa atctttgcaa aataaaaaag ttatcgctct tgacatgagt
    15301 gctttaattg caggtgcaaa atacagagga gaatttgaag acagattaaa agctgtcgtt
    15361 aatgaagtga taaaaagtga aaatatcatt ctttttatcg atgaaattca cactatagta
    15421 ggagctggag cgagtgaagg cagtatggat gcggcaaata ttttaaaacc tgctcttgca
    15481 agaggtgaac tccatactat aggcgcaact actttaaaag aatatcgtaa atattttgaa
    15541 aaagatgcag ccttgcaacg ccgttttcaa cctgtaaatg taggtgagcc aagcgttaat
    15601 gaggctttgg ctatgttaag gggtataaaa gaaaagcttg aaattcatca taatgtaact
    15661 ataaatgata gcgctttagt agctgcagct aaactttcaa agcgttatat agcggatcgt
    15721 tttttacctg ataaggccat tgatttaatc gatgaagctg cagctgaact gaaaatgcaa
    15781 attgaaagcg aaccaagttc tttaagaaaa gtacgcaaag atatagaaac tttagaagtt
    15841 gaaaatgaag ctttaaaaat ggaaaatgac gagaaaaatc aaaaaagact tgatgaaatc
    15901 gcaaaagaac tagccaattt aaaagaaaaa caaaatgcct taaattcaca gtttgaaaat
    15961 gaaaaaagtg tttttgatgg cataagtgct aagaaaaaag aaattgatct gcttaaaaat
    16021 gaagcttctt tggctaaagc tagaggtgaa tttcaaaaag cagccgagct agagtatgga
    16081 aaaattccaa gtcttgaaaa agaagtagaa attttagaag ataaatggaa aaaaatgagt
    16141 gaaaatggag ttttacttaa aaatcaagtg gatgaggatt tggttgctgg aattttaagc
    16201 aaatggacgg gtattagcgt gcaaaaaatg ttaacttctg aaaaacaaaa attcttagaa
    16261 gtggaaaaac atttaaaaga aagtgtcata ggacaagata aggccttaag tgctttagct
    16321 agagccatta aacgcaacaa agcaggactt aatgcggaca ataaacctat aggaagcttt
    16381 ttatttttag ggccaacagg ggtaggaaaa acacaatcag ctaaagcttt ggcaaaattt
    16441 ttatttgacg atgaaaaagc aatgattcgc tttgatatga gtgaatttat ggaaaaacat
    16501 agtgtttcaa gactcttagg cgcacctcca gggtacatag gacatgaaga aggtggagag
    16561 cttactgaag ctgtgcgaag aaaaccttat agcgtgcttt tgtttgatga agttgaaaaa
    16621 gcacataaag atgtatttaa tgtgctttta gggattttag atgatggtag agcaaccgat
    16681 agcaaaggtg taacagtgga ttttaaaaat accattatca ttttaacttc taatattgcc
    16741 tcaagcgcta ttatgaattt aagcggaaaa gaacaagaag atgtggtaaa aaatgagtta
    16801 aaaaatttct ttaaacctga gtttttaaac cgcttagatg atattatcac ctttaatcca
    16861 cttggaaaag atgaagctta tgaaatagtt aagcttttat ttaaagattt acaaatgagc
    16921 ttagaaaaca aggggataaa agcgagttta agcgaaaatg cagccctttt aatcgctaaa
    16981 gatggttttg atcctgattt tggtgctaga cctttaagaa gagctattta tgatcttata
    17041 gaagataaat taagcgatat gatacttgct gatgaacttc atgaaaatga tagcattatc
    17101 attgatgcaa aagatgatga aataatcatc aaaaaagctt aatcattttg aaagtagatc
    17161 tttctacttt caaaatataa tctcgctttc attaaatttc atatttgctt ttggcaatgg
    17221 tgatttggtg gtataataag cactttctcc tttataattt ccacgataaa ccccattagg
    17281 aatgctaaat tttctagttg tatcagggaa tttttctata tattgagtta aaaattctct
    17341 aaacacagga gcagctgttc tagccccacc ttctgtataa cgcataggct tgttgttatc
    17401 atttccatac caaatgattg cttctatttc aggcgtaagt ccacaaaacc aagcatcaac
    17461 acttttattc gttgttcctg tttttcctgc tatttctata tcttttactc ttgcattgcg
    17521 tcctgtgcct ttttcaacaa catttctcat catatctaaa accagaaaac tttgcgcttc
    17581 atcgctgact ttacgctcat ttgagttaaa ttccatgatg gttttaccgg ttttatcctg
    17641 aacttgtctg ataatttgag gatctttaat cgtaccatag ttcccaaaca tggtataaaa
    17701 tttcgaatac tccaaaggag aaataccaaa acttcccaat acgattgata aattaggcgg
    17761 tatatcttta aatccaaatt ccattagttt agagtaaaga acatcaagcc ccatatcaag
    17821 tgcgagatta atggtagcta aatttcttga tcttgttaaa gcttctttta aggtaattaa
    17881 acctaaaaat ttaccccctt catttttagg tttccaatcc tcattattac ccgctccacc
    17941 ttcaaaaatt ctagaaatat cagcaatttc actcataggc gaatatccta aattaatcgc
    18001 cacttgatac acaaaaggtt taaaagagct tccaggttga cgcatacttt gagtagcacg
    18061 gttataatta cttttttcat aatcaacccc acctaccaaa gctaaaacat cgccactttg
    18121 atgatttacc acgaccatag ctccgtttaa agtgcttaaa tttgcatctt tatcgcgttt
    18181 tactatctca tcataaccaa atttcaaagc attctgcgcc atattttgaa catctaagtc
    18241 tatatttaaa atgattttat atccacctgt ttttaagtct ttgatattag ggcttaattg
    18301 tttaatcact tcatctacga cataaggagc agcattttga gtaagcgtat catcataaac
    18361 ttgcggaatt tctttaatgg ctgtatcata atctgctttt gaaatccaac ctagattata
    18421 cattcttgaa ataacattat ttgctcttga gatggaaaga tctaaatgct ttgtaggatc
    18481 ataactgcta ggtgcttttg gcatacctac taacatagca atctctttaa ggcttaattc
    18541 atttaaattt ttatgaaaat accccaaaga tgcggttttt actccataat acccatgtcc
    18601 aaaaaagata aaatttaaat acctttctaa aatttgctct ttagttaaaa tggtttccat
    18661 tttataagca agcaaagctt cgcgaatttt acgcgtaatc gttctttctg gggttaattc
    18721 tgtgttttta ataaattgct gggtaagagt ggaagctcct tccatggttt ttccaccgct
    18781 ttttatgatt tttacagcag ctctaaaaat ggcatcgata ttaactccat tatgttcaaa
    18841 aaagcttgta tcttctatag caactaaagc ttctataagg cgtggaggaa gctcttcata
    18901 aggagcgtaa aaacgatgct gttcaaaaat attagccaca agcttgccat ttctatcgta
    18961 aatttgtgtt gtaagaggag gtttgtattc tttaaaagta taaccctcag tatcagcact
    19021 tgtgaaaaga taagccacat aaataaatcc agctataaac aaaagagtaa aaaatgaaaa
    19081 aatatatttt aatattttca taaataagcc tttaaagttt ggatatcaag ccctaaagca
    19141 gtgcttagat ttcctacttg gtgggtgatg aaattttgat gaaaaccctc acacataata
    19201 caacccgcct tgcctttata aagatcattt tctacataat ctcttaaagc attttcatca
    19261 aaatttttaa aataaagcgt agtttttgaa agagaaaaaa ctcttttttc aggttttaca
    19321 agcaaaaaag ccgataaaat acttgcatac ttgccatttt gcaaggcaag catttcataa
    19381 gcttcttttt tatcctttgc tttggtaaga attttttcat ctatacaaac tatactatct
    19441 gcaaaaagca aattttggtt ttgaaaatct ttgcctaaag tacttaaaaa ttgtctttct
    19501 ttttcaagaa ctattttttg aacatataaa aaaggtgaaa tattcttatc taaattttca
    19561 tcataatcaa aactaacttg cctaaaatca atctttgcgg ttttaagcaa gttagctctt
    19621 gaaatggaac ttgaagcaag aattaacatt aaagtgcttt ttctatcgtt tctaagcttt
    19681 gttttaaagc ttcattgatt ttgcttaaat cttttccacc tgcagtagca aaatcatctc
    19741 ttccgccacc atttccacct aaaatttgtg ccgcttcttt aaccaaagct cctgctttta
    19801 aaggcacatc tttaacacca gctgctaaag tgattttttc atcttttact tggataagta
    19861 aaatcaccgc tttagcaaat ttgtttttaa aatcatcaat catagcttta atatcgccat
    19921 tatctatacg ttttacgcaa atttcaacac cttggatatt tttagaatca agctcggttt
    19981 tacttgaatt tttaagctca ttttttaaac ttaaaatttc atttttaagc tttttaatcc
    20041 cgcttaaaat atcattattt ttaagttcat cttttacttt agaaagttct tcaagttgat
    20101 tttttacaaa ttctaaagcc gctttagaaa ccacagcttc aatgcgtcta actccagcac
    20161 tcacaccgct ttctttaact atgtaaaaac ttcctatttg agcagtattt ttaacatgag
    20221 ttcccccgca aagttccttg ctttcaccta gagttaaaac acgcacattg ccttggtatt
    20281 tttcattaaa caatgctata gcgccgcttt ttttagcttc ttctaaaggc atattttcta
    20341 agatagcttc gcttgagttt ataatcattt cattgactct tttttcaatg ttttctagct
    20401 cttctttgct taaagcttta tgatgagtaa aatcaaatct tagtttattg ctttcaacca
    20461 aagatcctgc ttgacttaca tgagaaccta aaatttctct taaagcatgg tgtaaaagat
    20521 gagtggctga gtggtggcgt gcgatttgct ctcttttttc tgtatcgatt cttgcatgaa
    20581 ctatatcgcc aacttttagt tcttcgcctg cttttacaaa gctaagattg agattaaaaa
    20641 acttttgcgt atctaaaact tcacgcttgg ccataaatcc actatcagca ctttgccccc
    20701 cacttgttgc ataaaaaggt gtgtttttaa gcatcaccca acccgcatct ttaagggtgg
    20761 aaacttcttt aaaatcttca tctaaaaggg ctaaaatttt actttcgcat tctgcttttt
    20821 cataacctac gaaatgattt tctccaaatt tttcaagcaa gtttttaaaa tctccgcttg
    20881 cagttttatc tccacttcct ttccaagaag ccttagcgcg tgctttttgc tcattcatta
    20941 aaagttcaaa tttttcttca tcaactttaa gatttttttc tcttagcata tcagccgtta
    21001 aatcaagcgg aaaaccataa gtatcataaa gtttaaaggc tacttctccg ctaaaaattt
    21061 ctttagtgtt tttaagctct tcattaaaaa tttcaatccc attttctata gtgcttaaaa
    21121 atctttcttc ttcaaggcga atttgttctt ttataaagtc ttttttctca ttaagatagg
    21181 tataatgtcc gcccattaaa tcgcatacaa catcaactag tttatacata aaagcttgtt
    21241 taaaacctaa caaatatcca tgtcttaaag cacgacgcaa aatacgacgc aaaacataac
    21301 ctctaccttc tttatcaaaa cttacccctt gtgcaagcaa aaatacactt gatcttatat
    21361 gatcagctat gactctaaaa cttgctccgc tttcataaat ataagtttta ttacaaagtt
    21421 ttgaaatttc attgatgatt ggcataaaaa gcgagctatc aaaattgctg aatttacctt
    21481 ctttaatcgc tgttactctt tcaagtccca ttcccgtatc aatgcttggc tttggtagtg
    21541 ggctaagcac tccatcagca cttctttcat attgcataaa aacaagattc cagatttcta
    21601 aaaatctatc tccatctccg cccatataat cttcgcttga gttaaaatgc tcttctcctt
    21661 ggtcataaaa aatctcacta caaggaccac aaggaccagt atcgcccatt tgccagaagt
    21721 tatctttatc gccgaatttg taaattcttt ctttttgaat gtgtttttgc catagattaa
    21781 aagcttcatc atcgttttca tgcacggtta cataaagtct gtctttaggt agttttaaaa
    21841 attcagttac aaattcccaa gcataagcta tggcttgttc tttaaaataa tctccaaaac
    21901 taaaattccc aagcatttca aaaaaagtat gatggcgtgc ggtatatcct acattatcta
    21961 agtcattgtg ctttccgccc gctcttatac aagtttgaca gcttgttttg cgtggagggt
    22021 ttgggcgtgg aatttctcct gtaaatatac ttttaaaagg caccataccc gcattagtaa
    22081 aaagtaaagt tgcatcatca ggaactaaag gacttgacgg ggttatctca tgtccttttg
    22141 atgcaaaaaa atccaaataa gcttttctaa tatccatgaa ttttcctaaa gaaattttta
    22201 taaaaacata tcataccaaa attactttaa attaagtaaa actaaaatac aataaacatt
    22261 tttatttaat tttatttctc taaggttttt tatgaatttt atcaatcttc aagcccaata
    22321 tctcgcatac aaagatgaaa tcaatgctga aattgaaagc gttttatcaa gctcttcttt
    22381 tataggcggt gcaaagctta acgaatttga gcaaaattta gctcattttt taggtgttaa
    22441 acacgctata ggttgttcaa gtggaaccag tgctttatat cttgccttaa gagccttaga
    22501 tattggcaaa gatgatgaag ttatagtgcc tagttttact ttcatagcaa cagctgaagt
    22561 tgtggcctta gtaggcgcaa aacctgtttt tgtagatata aatttatcaa attacaatct
    22621 tgattttgaa gcagtgcaaa aagcaataac cccaaaaact aaagctgtta tagcagtaag
    22681 tatgtttgga caaatgagtg atttaagggc tttagaagaa attttaaaag ataaaaatat
    22741 cactttgatc gaagatggtg cacaaagttt tggtgcaagt ttcaaaggag aaaaatcctg
    22801 ctccatagct aaaatttcat gcacgagctt ttttccttca aaacctttgg gagcttatgg
    22861 cgatggtggg gctatttttt gccatgatga tgaaattgct aaaaaaataa gaattttact
    22921 caatcacgga caaactcagc gttataaaca tgaatttata ggtataaatg gacgccttga
    22981 taccttgcaa gcggcgattt taaatgttaa gttaaaatac ctagaaaaag aattagacaa
    23041 aagacaaaaa ttagcacaaa cttataatgc aaatttaaaa aactgccaaa ttccgcaaat
    23101 tgatccaaat gcttttagcg cttatgcaca atacagcgtt ttagttgaag atagagctag
    23161 tgtattgcaa aaatttgaaa aagctaatat accttatgct atacactatc caaccccttt
    23221 gcataaacaa ccttgcttta gtgagttttc aaatttagaa cttaaaaatt cagaatacgc
    23281 aagcgaacac atcttatctt tgcctttttc acctttttta agtgaagaag agcaagagca
    23341 agttatttgt atttttaaag attaattcca tgaaaatagg tatcataggc cttggaaaaa
    23401 tggggcaaaa ccacttaaat gaacttagta aaaattctca ttttaagctt aatgcacttt
    23461 ttgatctttg caaaaatcca aatctaaata tttttgatga tattttttat gatgatttgg
    23521 ataaattttt aaatcaaaat aatgatatta tcatcatagc aacacctaca aattcacatt
    23581 tagcaatagc aaaaaaagtt tttaaacaat gcaaatgcgt tttaatcgaa aagcctttag
    23641 ctctaaattt aaaagaaata gacgaaattt caaatttagc taaagaatac agcgtaaaag
    23701 taggcgtagg tttttgtgaa agatttaatc ctgcggtttt agccctaaaa aaagagcttg
    23761 aaaatgaaga aattatcagc attaacatac aaagattttc accctacccg caaagaatca
    23821 gcgatgtagg gattttgcaa gatttggctg tgcatgatct tgatttgctt tgttttttaa
    23881 gcaaacaaga aataacaaaa accaatttgc ttaaaaaata tacccaagat caaacaagag
    23941 aaagtgaaag cattattcta tgtgagcttg aaaaatgtat tgctagcata catcaaagtt
    24001 ggaatagcac acaaaaacta agaaaaattc atcttattac taaaaatcat ttttatgaag
    24061 ccaatttaaa tgacttttct ttattaaaag atggaaattt tatagaactt actcaacaaa
    24121 gtccactttt ttcagaacac gaagctttgt taaaacttat cgataatcaa gctaatcatt
    24181 tagccagcac gagcgatgct tacaaagttc aagaaatttt agaaaggttt gcgtgaaatt
    24241 agttttattt ttaaatatgg gcggagctac gaatttacaa gattgtgaag tttttttaaa
    24301 aaatatgttt aatgatcctt atattttagg aatcaaaaat cgatttttaa gaaaatttgt
    24361 agcatggatc ataacaaagg ctcgcgttaa agccatgcaa gaaaactata aaaaaatggg
    24421 tggaaaatcc cctttaaacg aacttactca aagcctgtgt aataaactta atttaaaaca
    24481 agatgaattt aaatttgatt ttgtaaatct ttatgtgcct ccttttgcca cagaaatttt
    24541 gcaaaaatac actttaaatg aaagtgatga aatcattctt tttccacttt atccgcacca
    24601 ttcttgcacc acagtaactt catctttaga agttctgcaa aatgaaattt caaagcaaaa
    24661 aattcaagca aaagtaaaaa ctatagatat tttttacaaa aatgagcttt ataatgagat
    24721 gatagtttcg cacattttgg ctaaaaaaag taaatttgat gccaaaattt tgattttctc
    24781 agcgcattct ttaccacaaa gcattattga caaaggtgat ttatatgaaa agcatgtaaa
    24841 tgatcatgta gaaattttaa aagaaaaact aaaagatcat tttgatgaat ttattttagc
    24901 ttatcagtct aaactaggcc ctgtaaaatg gcttgaacca aatacaagcg atgttttagc
    24961 aaatttaaac gataaagctt tgatttaccc tatttctttt tgcattgatt gttctgaaac
    25021 gatttttgaa ctaggtatgg agtataaaca tttagcaaaa tgtgattatg atttgataag
    25081 ttgccctaat gatagtgatg aatttatgga atttatttta aattctataa at
//
LOCUS       DAEDTT010000011        24906 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.011, whole genome shotgun sequence.
ACCESSION   DAEDTT010000011 DAEDTT010000000
VERSION     DAEDTT010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24906)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24906)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24906
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.011"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..179
                     /locus_tag="KLC54_000342"
     CDS             <1..179
                     /locus_tag="KLC54_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HBD9176752.1"
                     /translation="ENLGFWVCEGHYHQNHQINKENIKYLNLASFAYERSFFVVEYQQ
                     EIKFREQKLRGQNV"
     gene            172..1128
                     /locus_tag="KLC54_000343"
     CDS             172..1128
                     /locus_tag="KLC54_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HBD9176753.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQVYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            1132..3441
                     /locus_tag="KLC54_000344"
     CDS             1132..3441
                     /locus_tag="KLC54_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HBD9176754.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVAATDSNEKSTPQAEPEAPKQETTTPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNTANKPAESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLVEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            3446..3967
                     /locus_tag="KLC54_000345"
     CDS             3446..3967
                     /locus_tag="KLC54_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HBD9176755.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            3967..4590
                     /gene="serB"
                     /locus_tag="KLC54_000346"
     CDS             3967..4590
                     /gene="serB"
                     /locus_tag="KLC54_000346"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HBD9176756.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMAGEL
                     DFFESLQKRVSLLKGMSYKKVLELGSTLPLMHGAHELIQYLKSKNIQIVIFSGGFHEG
                     IDPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
     gene            4590..5567
                     /locus_tag="KLC54_000347"
     CDS             4590..5567
                     /locus_tag="KLC54_000347"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HBD9176757.1"
                     /translation="MKNFSLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILN
                     SPIYKDKILKLKGKKTKDIYEELAISDIQKAADKLAPLFYQKNDGFISIEIDPRLHDN
                     TTLSLGEAKRLYSAISKENVMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRFDRLLNPKAKEQNRIGILNANL
                     AYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKGKMD
                     FKKPLMNFEIYTELNQIISQSEREKACNDLLSDGIEQFCIAFEDILKAL"
     gene            complement(5568..5990)
                     /locus_tag="KLC54_000348"
     CDS             complement(5568..5990)
                     /locus_tag="KLC54_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HBD9176758.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFYELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(5987..9256)
                     /gene="carB"
                     /locus_tag="KLC54_000349"
     CDS             complement(5987..9256)
                     /gene="carB"
                     /locus_tag="KLC54_000349"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HBD9176759.1"
                     /translation="MPKRTDIKSILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYRV
                     VLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESLLGWKEYEMEV
                     IRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAINPKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTVPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIYLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            complement(9517..10266)
                     /gene="mreC"
                     /locus_tag="KLC54_000350"
     CDS             complement(9517..10266)
                     /gene="mreC"
                     /locus_tag="KLC54_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HBD9176760.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGEKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGENRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINIGDEILTSGLDNIFFSDIPVGIVN
                     RIDDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(10256..11296)
                     /locus_tag="KLC54_000351"
     CDS             complement(10256..11296)
                     /locus_tag="KLC54_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HBD9176761.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGLDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(11308..12531)
                     /gene="clpX"
                     /locus_tag="KLC54_000352"
     CDS             complement(11308..12531)
                     /gene="clpX"
                     /locus_tag="KLC54_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HBD9176762.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(12524..13315)
                     /gene="lpxA"
                     /locus_tag="KLC54_000353"
     CDS             complement(12524..13315)
                     /gene="lpxA"
                     /locus_tag="KLC54_000353"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HBD9176763.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNDVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGIRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(13315..13755)
                     /gene="fabZ"
                     /locus_tag="KLC54_000354"
     CDS             complement(13315..13755)
                     /gene="fabZ"
                     /locus_tag="KLC54_000354"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HBD9176764.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVRGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
     gene            complement(13850..14941)
                     /locus_tag="KLC54_000355"
     CDS             complement(13850..14941)
                     /locus_tag="KLC54_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HBD9176765.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLHKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSPVNKQILPASIEARIALYKKVVLWEKKG
                     IKFQILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYTRFSLDEENLKQNLKEG
                     FYRSTKDEMVFVEFWRFNAFFKNKWKNFEDFLKKPLSIQAEVRWRNKLFGTYNLSPII
                     ILENILPSRYEVIAKSEIYHDNQEVLAKI"
     gene            complement(14941..15396)
                     /gene="bcp"
                     /locus_tag="KLC54_000356"
     CDS             complement(14941..15396)
                     /gene="bcp"
                     /locus_tag="KLC54_000356"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HBD9176766.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVASHEKFISKFDLKHILLSDSEKEVAKAY
                     GAWGLKKNYGKEYEGLIRSTFVIDETGKIAQIYSNVRVKDHALKVLESL"
     gene            complement(15393..15599)
                     /locus_tag="KLC54_000357"
     CDS             complement(15393..15599)
                     /locus_tag="KLC54_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HBD9176767.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITELLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKANK"
     gene            15775..16689
                     /gene="ilvE"
                     /locus_tag="KLC54_000358"
     CDS             15775..16689
                     /gene="ilvE"
                     /locus_tag="KLC54_000358"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HBD9176768.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKDLENAQIELLKANNFQSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQDTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     SVTKKLQDAYFDVVYGRNEKYASMLTYI"
     gene            16702..17790
                     /locus_tag="KLC54_000359"
     CDS             16702..17790
                     /locus_tag="KLC54_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HBD9176769.1"
                     /translation="MPADLNDYFNKKNGNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FVYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIAAQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSAANMN"
     gene            17802..18332
                     /locus_tag="KLC54_000360"
     CDS             17802..18332
                     /locus_tag="KLC54_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HBD9176770.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKIAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQVQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            18332..18841
                     /locus_tag="KLC54_000361"
     CDS             18332..18841
                     /locus_tag="KLC54_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HBD9176771.1"
                     /translation="MHFTIFHIIAFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVSGKVQNLTKFEIKKCYLILS
                     ILNQQQVGGEIFNDKNIRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPTFNNP
                     EFYHTLKCI"
     gene            19322..19897
                     /locus_tag="KLC54_000362"
     CDS             19322..19897
                     /locus_tag="KLC54_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HBD9176772.1"
                     /translation="MKKIFISFVVLATCLWAKNTAYTDEVVSLYLNKDDTKVIGRLLP
                     TNPFEVLKSENNRVLLKIDGYVNPKAPSVIYFNDSQRIIVAAFSKNTKLNFSQRITGK
                     NGKWDKVSLEIWADKKEFVKDNKEMLNRAKELFVNNCGICHAIHKEKEFTANAWPAIF
                     RSMADRTGIDKKDRWLVIEYLQKNAKDFKTK"
     gene            19908..22424
                     /locus_tag="KLC54_000363"
     CDS             19908..22424
                     /locus_tag="KLC54_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HBD9176773.1"
                     /translation="MLDRRKFLKIGASLSALPLIPSLSAGKTVEASKVSLGLVKNGEV
                     ITAAHWGILKLTIKDGKIVKSEPWEKVTKMDNPLQHYTADMVYKSRVKYPYVRKSYLE
                     NPDNPKPELRGKDEFVRVSYDEAIKLIAKELKKTRDSKGASAIFGGSYGWKSSGNMQN
                     SRILLHRFLNVTGGFVGATGDYSTGASQVIMPYVVGSIEVYEQQTSWENILSDSKYVV
                     IWGADPLSTLRIAWTSNEQRGLAYFEKLKDSKIKVICIDPVKTTTAKFLNAKWIAPRP
                     NTDVALMMGMASHLIAKKKVNYEFLDTYTTGFDKFKDYLEGKEDGVKKDTKWASKICG
                     IDEKTIKNLTETFYDNSTMIMSGWGMQRAHHGEQPHWMLVTLCAMLGQIGTKGGGFGL
                     SYHYSNGGVPTCKGGVIGGMTAGSLGIWKNGKFKGLSKAEASSEGAEWLQNAASYSFP
                     VARIADALLHPGKTIDHNGAKITYPDIDFIYWVGGNPLVHHQNTNTNVKAWRKPRTVV
                     VNEIYWTPTAKMADIVMPVTSSYERDDITMTGDYSNMHIAPMKQAVEPVGESKDDYVI
                     FSDICKIYGKDVFNAYTENGKKAKDFIKEYYNSALKQTQSFGEAFATPMPSFEEFWAK
                     NEPITFEPTAESLEWTRFSEFIEDPILNALGTDSGLIEIYSETIKNYNYDDCKAHPTW
                     FEPIEWLGNASKEAPFHLLTNHPRDRLHSQLCHTSLRDTYAIKDREPILINSKDAKKL
                     GIKNGDVVRVFNKRGEVLAGAVVSDEIMQGVVRLCEGAWYDPNENGLCKCGNANVLTM
                     DIPTSKLANGNISHTGLVNIEKFKGELPKLTAFSAPKGAN"
     gene            complement(22448..23323)
                     /gene="zupT"
                     /locus_tag="KLC54_000364"
     CDS             complement(22448..23323)
                     /gene="zupT"
                     /locus_tag="KLC54_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HBD9176774.1"
                     /translation="MQFTFEQIFIAMLLTLFAGFSTAIGSIIAFFSRKDDLRVLSLGL
                     GFSAGVMIYISFMEILPTALKDFKNHYDSHWAELLGLACFFGGILISLLIDKLIPEDV
                     NPHEPKEDLSELKICPLPQKGQNPPKFHPGEKLHQINTKALKRTGIFTALAIAIHNFP
                     EGFATFISSLDNLTLGIAIAIAVAIHNIPEGLAVSLPIYHATGDKKKAFIYSALSGFA
                     EPLGAFVGALILLPFIGDLTLAISFAVIAGIMVFISLDELLPAAKTYDKAHDSLYGLI
                     AGMAIMALSLNLLGQ"
     gene            23515..>24906
                     /locus_tag="KLC54_000365"
     CDS             23515..>24906
                     /locus_tag="KLC54_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HBD9176775.1"
                     /translation="MQKMNSGKSVGISAKLTLWVGILVVLILAITSAVSYFDAKNHTY
                     ELLKENQLKTMDDVKVTFENYSKSKQKAIEVLAYESAKKLEDENISLLLDSFKKAFDF
                     DIVFIAFDKNNKMLLSNGTILDKKSNFDITKQIWYQEAKNNKGITITQPYKSPIDQEI
                     GITYVFPIYKNNQLIAFVGGDYNLDKFSKDVLSLGHSSTTYAAVYDSEGRIIFHEVLD
                     RILTKNTLSVNIANTIKENPEYIDLNKRDILFPVFDDKGIKYEAMCDTSSNGLYRICA
                     VTLDSNYTSAVNSILMKQVIVGIIAIIIALILIRFLISRSLSPLAAIQTGLTSFFDFI
                     NYKTKNVSTIEVKSNDEFGQISNAINENILATKRGLEQDNQAVKESVQTVSVVEGGNL
                     TARITANPRNPQLIELKNVLNRLLDALQARVGSDMNEIQRVFNSYKSLDFTTEVKDAN
                     GAVEVTTNALGQEI"
BASE COUNT         8801 a         4245 c         3774 g         8086 t
ORIGIN      
        1 atgaaaattt aggattttgg gtatgtgaag gacactatca tcaaaatcat caaatcaaca
       61 aagaaaacat taaatatctt aacttagcta gttttgcata tgagagaagt ttttttgtag
      121 tagaatatca gcaagaaatc aaatttcgag aacagaaatt gaggggtcaa aatgtttgat
      181 gaaaatatcg tgaaaacggg ttcaaatgaa atggagcttg tcgatttccg tatctttaag
      241 caaggacacg ataaagtcta tgaaggaatt tatggtgtaa atgtttctaa ggtaagggag
      301 attataaaaa tcccaagcct tacagaactt ccaggtgtac ctgattacat cgaaggtatc
      361 tttgatcttc gtggagtggt tatacctgta gtcaatcttg ccaaatggat gcaaatcact
      421 gagccagaaa gcactatgtt aaaacctagg gttattatta ctgaatttag caatatcctt
      481 attggtttta tagttcacga agcaaaaaga attcgtagaa taaactggaa agatatagaa
      541 ccagcaactt tttctacagg atcaggtgct ttagataaag gtaaaatcac aggtgtaaca
      601 cgcattgaaa atgatgaagt gttgctaatt ttagatcttg aaagtgttgt tgaagattta
      661 ggaatttacg ctccaaaaac agatatagat tttggaaaaa tagaaaaatt tactggaaca
      721 gcacttatac ttgatgacag catgactgct agaaaacgcg tcaaagaaat gatgcaacag
      781 atgggctttc aagttgttga agctaaggac ggcgtagagg gcataaacaa attagaagaa
      841 ttaagccaag tttatggtga aagtttaaat gatactttaa aaattatagt aagcgatgtc
      901 gaaatgccac aaatggatgg tttccacttt gctgcacgca ttaaagaaga tccaagattt
      961 aaagatattc ctatagtctt taactcgtct ttatcaaatg aatttatgaa tgagaaaggt
     1021 gttcaagaag ctggtggaga aggctatctt gtcaaattta acgctagcga tttcttcaat
     1081 gaaattgcaa aggttatcaa aaaacatcaa tctcaagaac aggggtaaaa tatggaagat
     1141 atgcaagaaa tacttgaaga ctttttggtt gaagcttttg agcttgttga gcaaatcgac
     1201 catgatttag tagagcttga atcaaatcca gaagatttag aattattaaa tagaattttc
     1261 cgtgttgcac atacggttaa aggatcatca agtttcttaa attttgatgt tttaacgaag
     1321 ttaactcacc acatggaaga tgttttaaac aaagcaagac atggcgagtt aaaaataact
     1381 ccagatatca tggatgtggt tttagagtct attgatagaa tgaaaacttt gcttaattcc
     1441 attcgtgata atggcaacga tactgctatt ggtatggata tagaaccaat ttgcgcaaga
     1501 ttaacagcta tttcagaagg agagtctcct gttgcggcaa cagattcaaa tgaaaaatct
     1561 actccacaag cagaaccaga agcaccaaaa caagaaacaa ctactcctga acctgaagta
     1621 gatgttaatc aattaagtga ttctgaagtt gaagctgaaa tagaaagact tttaaaagtt
     1681 agaaaagctg aagatcaagc tcgtcgcgca caaaagaaac aaacaacaaa tgcggcacct
     1741 aaaccgacta acaatacagc aaataaacct gcggaaagtg gagagaaaaa agttcctgct
     1801 tcaggtagca atgctagcag tatggatcaa accatacgcg tggaggtaaa aagattagat
     1861 cacttaatga atctaattgg ggagcttgtt ttaggtaaaa accgtttgct taaaatttac
     1921 gatgatgttg aagagcgtta tgaaggagaa aaattccttg aagaacttaa tcaggttgta
     1981 agtcaattaa gtattattac aactgatgtt cagcttgctg taatgaaaac aagaatgcaa
     2041 cctatagcaa aagttttcaa taaattccca agagttgttc gtgatttgag tcgtgaatta
     2101 ggaaagcaaa tagaacttga aattacaggt gaagaaactg aacttgataa atctatcgta
     2161 gaggaaattg gcgatcctat catgcatatg attagaaatt catgtgacca tggtgttgag
     2221 gatccagcaa ctcgtgcagc taatggaaaa cctgaaaaag gtatagttca acttaaagct
     2281 tataatgaag gcaatcacat cgttgtagaa attacagacg acggtaaagg acttgatcca
     2341 aatggcttaa aagcaaaagc tatagagaaa aatttgatta ccgaaagaga agcagatcaa
     2401 atgacagaca aagaagcttt tgctttgatt ttcaaacctg gtttttcaac tgcggctaaa
     2461 gtaacaaatg tttcaggtcg tggcgtagga atggatgttg ttaaaaccaa catcgaaaaa
     2521 ctaaatgggg taattgaaat tgatagtgag ttaggtaaag gaagttcgtt taaacttaaa
     2581 attcctctta ccttggcaat cattcaatct ttacttgtag gaactcaaga agaattttat
     2641 gcaattccac ttgcaagcgt tcttgaaaca gttagagtac caattgatga tatctatact
     2701 atcgaaggta aaaatgtatt acgcttaaga gatgaagtgc tttcccttgt gagactttca
     2761 gatgtatttg gagttaaaca agtccttgaa agcggtgatc aaacttatgt cgttgttata
     2821 ggggtagcag aaagcaagct tggtattata gtagatactc ttgtaggaca agaagaaata
     2881 gttattaaat ctatgggtga ttatttacaa aatatccaag gtatagcagg agctacaatc
     2941 cgtggtgatg gtagagtgac attaatcatc gatgtaggtg ctatgatgga tatggccaaa
     3001 gaaattaaag ttgatattaa agcgcaatta gaatcaagtg cgaaaaaacc taaagaacaa
     3061 ccaagtgatt ataaagtctt aattgtagat gattctaaaa tggatagaac tttaatgcaa
     3121 aaagctttag aaccactagg agttagttta gttgaagcaa caaatggtgt tgaagcattg
     3181 aatattataa aatctggcga acatgatatt gatgcaatgc ttatagatat cgaaatgcca
     3241 agaatggatg gatacacctt agctggtgaa attagaaagt attctaaata tcgtaactta
     3301 ccactcattg cagttacttc aagaacaagt aaaactgacc gcttaagagg tgttgaagtg
     3361 ggtatgactg aatatatcac taaaccttat tctccagaat acttggaaaa tgtggttaga
     3421 aaaaatttga aactaggata agaatatgag taatgaaaaa ttagagcaaa ttttgcaaaa
     3481 acagcaaact cagatggctg gtcctgatgt cgatcaaaga gaagatgata tcatccaact
     3541 tgtcggcttt gtagttggag atgaggaata tgcgattcca attcttaata tacaagaaat
     3601 catcaaacct atagaatata ctagagttcc tagtgtacct gattatgttc taggggtttt
     3661 taatatgcgt ggtaatgtta tgccactcat tgatctagct caacgctttc atttaggaag
     3721 ttctaaaatg acacctcaaa caagatatat tgttttaaga ggtgagacaa atggaactgg
     3781 agttggagga aatgctggtt ttgttataga tagattaact gaagcaatta aaattcacag
     3841 aaacagaatc gatccaccac ctgaaacttt agttaaagac aaaggtatga tttatggtat
     3901 aggaaaaaga gatgaaaata tcttaactat actcaaagta gaagctttac ttaagcgcga
     3961 attttaatga ttaaactttg tgtttttgac tttgacgcta ctttaatgga tggtgaaacc
     4021 atcgatattt tagctacagc gcatggcaag ggtaatcaaa caagcgaaat tacccgccat
     4081 gccatggctg gagagcttga ttttttcgaa agtcttcaaa aacgagtaag ccttttaaaa
     4141 ggtatgtctt ataaaaaagt tttagaatta ggtagcacac ttccactaat gcatggagca
     4201 catgaactta tccaatattt aaaatctaaa aatatacaaa ttgttatttt tagcggtggt
     4261 tttcatgaag gcatagatcc tgctatgcaa aaacttggaa ttaacctcgg ttttgcaaat
     4321 tatctgcatc ataaaaatga cattttaaca gggctagttg gtggggaaat gatgttttca
     4381 aattcaaaag gcttaatgtt acaacgatta aaaagctttt taaatttgaa aacagatgaa
     4441 gtgatgtgcg ttggcgatgg ggcaaatgat ttggcaatgt ttaacgaaag tggattaaag
     4501 attgcatttt gtgctaaaga aattttacgt tctcaagctg atatttgcat agatataaaa
     4561 gacttaaaag aaataataaa ggtaatataa tgaaaaattt ttctctttgg tgtgatttta
     4621 tagaaaatag ttttttagat aatgaatttt taaatttatt atcacatgga attaatggtg
     4681 ctacttcaaa tcccgctatt tttaaaaatg ctattttaaa ttctccaatt tataaagata
     4741 aaattcttaa attaaaagga aaaaaaacaa aagatattta tgaagaatta gcaatttctg
     4801 atattcaaaa agcagctgat aaactagctc ctctttttta tcaaaaaaat gatggattta
     4861 taagtattga aatagatcca agacttcatg ataacacgac tcttagttta ggcgaagcta
     4921 aaagacttta tagtgctatt agcaaagaaa atgtaatgat taaaatacca gctacaaaag
     4981 cttcttatga agtaatgtat gaacttatga aaaatggtat tagcgtcaat gctaccttaa
     5041 ttttttctct tgaacaaagt caaaaatgtt ttgaagcttt aaatgcaggt ttagtcgaat
     5101 ttagaaaaaa caatatagcc ttaaaagaac aaaatactag aacaccacaa gctgttataa
     5161 gtatttttgt aagtcgtttt gatagacttt taaatcctaa agccaaagag caaaatcgta
     5221 ttggaatttt aaatgcaaat ttagcttata acaatatcta ctcaaaaaat gaacctaata
     5281 ttcgcgcctt gtttgcaagc actggagtta aaggagatga tctgccaaaa gactattata
     5341 tcaaagaact tctttttgag aattctgtta atactgctcc tcttgatgca atagaggcat
     5401 ttaaaggaaa aatggatttt aaaaaacctt taatgaattt tgaaatttat acagaactta
     5461 atcaaatcat ttctcaaagc gaacgagaaa aagcttgcaa tgatttatta agcgatggca
     5521 tagagcaatt ttgtattgct tttgaagata ttttaaaagc tctttaatta acgtattttt
     5581 atcattttat tctttgaaag ttttaatatt tttgatggga tattttcgaa aaatttctca
     5641 tcaagtatta tatcagcaac acttctagcc cattcttcat caaattcttt tccatgcttg
     5701 tttgctgaag atgaataaaa atagccattt ttacttaaaa aattcgcatg tttacactct
     5761 ttcacaatac gaatggcctg attatttgga taaataaaag ttgttttttt agaacgacgt
     5821 actaaatttt taaaagattt tggaattctt gccaaacttt ttaactcgta aaatttcgca
     5881 gaagtgatta agcaaggttg atttttatct ctacctttta aagcattaat ctcttctaaa
     5941 tttttactta aaaatcctac cgtagtatct gtttgagcta aataaatcaa gatttaagcc
     6001 actcttgcaa actctttaca tctaggcaag atttactctg tatagcttta atcgattttg
     6061 cgcctgctaa agctgatcgt aaatttgtaa aataaggtat tttaaaacga atgatatttt
     6121 cacgaatttt tttcgtatcg cctttaaaac tgtgactatc gcttgtattg ataactaaat
     6181 aaatttcccc atttttcaat ttatcttcaa cattggggcg tccttctgaa attttatgta
     6241 caagttcgca ctcaaaacca ctttctaaaa tttccttaca agttccccct gttgccataa
     6301 gcttaaagcc aagctttaca tattctgcgg cgattttttt ggtatatttt ttatccttat
     6361 cttttaagga gataaatacc acgccttgct ctggaagatg attaaacgat gcgatttgac
     6421 tttttgcgta agaatttgca aaatccttgc ttatacccat aacttcaccc gttgaacgca
     6481 tttcagggcc taattctaaa tcacttccgc taagttttgc aaatggaaat accgcttctt
     6541 ttacactcat atattttgga gttttagggc gtaaaatttt agtatcaaaa ttaaccactt
     6601 tgaaagtatc ataaaatttt aaagcttctt ttaaatttcc ttgccacatc acacgcgttg
     6661 ccacttttgc taaaggaata cccgtagctt tactaacaaa aggcacagta cgactagctc
     6721 taggatttac ttctatcata taaagctcat tattatgtaa agcaaattgt atatttaaaa
     6781 gccctacaac tcctaaattt aaagcaatat ctgcggtttt ttgtgcaata aattcttgca
     6841 ttttttcatc gatattacaa ggtggtaaag aacaagcact atcgcctgaa tgaattcctg
     6901 cttcttctat atgctccata attcctgcca cataaacatc tttgccatca caaatcgcat
     6961 caacatcaat ttctgtagca ttgtctaaaa actgatcgat caaaacagga cttttatcac
     7021 tcacatctac agcttcttgc atatagagtc taagttcggc ctcatcattt accacacgca
     7081 tcgcacgccc acctaaaaca taacttggtc ttacaagcac aggatatcct atatcactag
     7141 ctttaagcac tgcttcttcc acacttgttg cagtggaatt tttcggctga ttaataccta
     7201 gctttgtaat aaattcagca aatttctttc tatcttctgc catatcaatt actcttgcac
     7261 tagtacctat aatcttagct ccaaaagcgc ttaaacgctt agcaaatttc aaaggagttt
     7321 gtccgccaaa atgcacaatc actccatcag gtttttcacg ctcaatcacc gctcttaaat
     7381 gttcaaaatc aataggctcg aaatacaaaa tatcacttgt atcatagtca gtcgaaacgg
     7441 tttcaggatt acaattatac ataatagttt taatacccat atctttaagc gcaaaagaag
     7501 catgtacgca agcatagtca aattctatac cttgtcctat gcggtttggc cccccgccta
     7561 taatcatcac ttttttttct tttttatcct tagcatcgtt tttactttga gtaagttcgc
     7621 ttacattaat acttgaataa agataaggag ttaaagcttc aaattcaccc gcacaagtat
     7681 ccacttcgct aaattctgca atgatttttt gcttcattct tgcataataa atatcatttt
     7741 ggcttaattc taaattatct ttcaaattta caagcaaggc tatcatttta tctgaaaaac
     7801 ccatagtttt tgcttttctc aaaagagctt tattgtttaa aatatccata tcaatttgct
     7861 cttcaaaatc tacaatttct ttaatctgtg ttaaaaacca aggatctatt ttacaaagct
     7921 cataaagttc ttctacgcta aaaccttctc taaaagcttg agcaacataa agcaaacgct
     7981 tttcattggc attgcgaatt ttaaaaacaa gatcatttct atcttcaaat tttactctat
     8041 caaaaccact caaagaacgc tcaagagaac aaagtgcttt ttgtatactt tctttaaaag
     8101 tacgtcctat agccatcacc tcacccacac ttttcatagc tgtacctaaa gttgtatttg
     8161 ctcctggaaa tttttcaaaa gtaaagcgag gaatttttgt tacaatgtaa tcaatcacag
     8221 gctcgaaaga tgcaggagtt cctgtaatat catttttaat ctcatctaaa ctaaaaccta
     8281 ccgccaaaag tgtcgcaacc tttgctatag gataacccgt tgccttagaa gctaaagcac
     8341 ttgatcttga aactcttgga ttcatttcta taactatcat tcttccattt tttgggttga
     8401 tagcaaattg cacattactt ccgcctgtat ctacaccaat ttcacgcaaa atagcaaaag
     8461 aagcattacg cataacttga tattctttat ccgtcaaagt taatgctgga gctattgtaa
     8521 tactatctcc tgtatgaact cccataggat cgatattttc tatactacaa actatgatac
     8581 aattatccgc tctatcgcgt ataacttcca tttcatattc tttccaaccc aacaaacttt
     8641 cttcaatcaa aatttcatgg ataggcgata aagctaaagc agtattggca agttctttaa
     8701 attcgtccat attataaacc acaccacttc cagcacctcc taaagtataa gaagcacgga
     8761 tcatcaaagg aaagccaatt tcatctacag cttttaaagc ttcatcataa ttatacgcat
     8821 acatcgattt tggcaaatcc atgccgattt ttttcataca ttctttaaag acctgacgat
     8881 cttcaccttt tttaatcgcc tcagggtttg cacctaaaaa tttcacatct cctaaaagtc
     8941 cactttcata aacttccata gcaacattta acgctacttg tccacccatg gttggtaaaa
     9001 ttgcatcaat tttttctttt ttaataatac ttaaaatact ttcttttgtt atgggttcta
     9061 tataagtcgc atctgcaaat tcgggatctg tcatgatggt tgcaggattt gagttgatta
     9121 atactacacg atatcctaat tcttttaaag tctttgcggc ttgagttcca gaataatcaa
     9181 attcacaagc ttgtcctatc acaataggac cacttcctat aagtaaaatg cttttaatat
     9241 ctgttcgttt tggcataaat tttcctaaga gcataaattt gggctgatta taacaaaaat
     9301 tagttttata aactttgaaa ttatcgatat aattttaaaa aataaacact ctgcttttaa
     9361 tctaggaaat aatacataaa taaatttaag attttttata aaattctcat tcgattataa
     9421 aaatttattt gataatttaa caaaattttt agcattaaac aaagttataa taattagcaa
     9481 aaatatagaa aatttttaaa aagtctaatc cttgacttat aaattatcta ctacatataa
     9541 ataagcagga atactaatct taacataagg ctttacttct acactttgat acatatcttc
     9601 atcatcaatt ctattcacaa tcccaacagg tatatctgaa aagaaaatat tatcaagtcc
     9661 acttgttaaa atttcatctc cgatattaat ttttgcccat tttggaataa atttaaccac
     9721 aatcctgcca tcttcacctt ggattaaacc tggagctttg gattttccta tataaacaga
     9781 aaaaacacac tgatcatcac cttgtaaaag agccattgct ctaccatttt tattaatagc
     9841 tatacctgca gtatatcctt gatatatcaa accacgattt tcaccaacgg gaattttact
     9901 ccaatctaac cacaattttt tataatcatt caattgaaca taagaaataa ctctagttaa
     9961 agaaacttga ggtaaatatt ttgtagaatt ttgatcctct aaaatacgat ttaattgatt
    10021 tgcaaaacta gttaccttta cagcaatatc ttctaattct ttatttctag cttttagttg
    10081 ctgaatttga tttgcttgat taaagtgttc tgaaattttt tctcccaaat aatctttaat
    10141 attataaaaa ttacctataa caaaatcatt aacacggaga acattttgct taataagtcc
    10201 tccataataa aaagatataa aaaccaaaaa ggctaagaca agaacataaa aaatcttatt
    10261 cttcattggt taattgttgc aataatgaaa tttcctctaa agctttacct gttccttttg
    10321 ctacagctaa aagcggttca tctgcgatat aaactggcaa acgtacaatt tcacttaagt
    10381 atttatcaag accacgaatc aatgctccgc cacctgttaa aactacacca ttttctacta
    10441 tatcacttgc taaatcaggc ggcatcattt caagaaccat ttttaaagca tcagcaattt
    10501 cttttaaata ctcacgcatc gcttctctta catcttcgct tgtaagttca atacgactta
    10561 aaagtccact tacttgatcg cgtcctttta ccaccataga aagctctttt ggaagttgta
    10621 ttgctgaacc tatagtgatt ttgatctctt cgcctgttct ttcacctatg ataagattgt
    10681 atttttcttt tacataatta actatactca tatcaagctt atctccagcc gtacgaatag
    10741 actttgaaat cacaagtcca cccaaagaaa tcactccaat ctcagtagtt ccacccccta
    10801 tatctactac caaatttcct ttaggctctt gtataggtaa acttgcacca atagctgctg
    10861 ccataggctc ttcaatcaaa aatacctctc ttgcgcctgc gcttaaagca ctttctctta
    10921 ccgcttttct ttctacttga gttaaaccat aaggaacaga aatgataatt ctagggcgta
    10981 aaaaactttt tctacggtgt gttttttcta taaaatagcg gatcattttt tcagtcatat
    11041 caaaatctgc aatcacgcca tctttcatag gacgaatagc ttcaatattg cctggagttt
    11101 ttcccaccat atctttagct tctttaccta cggctaaaat ttttgctttg gaaccatacc
    11161 tttctctttc aactgccaca acagaaggct catttatcac tataccctta tcttttacca
    11221 aaactagcgt attagctgtt cctaaatcaa tccccatatc actagaaaaa aatcctataa
    11281 gctgatctaa tatcatttct atccttttta acttattttt ctttttatta ataatgcctt
    11341 tgcattgtct ttaacaactt ctttggttat tacaatatca tagtctttat actctggtaa
    11401 ctcaaacatt aaatctacca tcatttcttc tataatactt ctaagccccc tagcccctgt
    11461 ttttctctcc aatgcaagtt gtgcgatagc tcttagagca tcttcttcaa attttaaatt
    11521 cactccatca atagcaaaaa gcttttgata ttgcttaata atggcatttt taggctcagt
    11581 taaaattctt accatatctt cttcattaag ctcatttaaa gatgcaatca catgcaaacg
    11641 acctataagc tcaggaatca aaccaaaatg caccaaatca tcaggttcaa ttttctcaag
    11701 taaagcttta ttttcttctt ttgcatcgtc aaaaaagccc acaactttat cgccaagttt
    11761 tctttttaag atagtttcca aaccatcaaa agctccacca caaacaaata aaatatttga
    11821 agtgtcaatt tgtataaact cttgatttgg atgttttctt cccccttttg gtggaatatt
    11881 gaccaaactt ccttcgataa tcttaagtaa agcttgttgc actccctctc cacttacatc
    11941 acgagtaata gaacgatttt cactcattct agcaatttta tcaatctcat caataaaaac
    12001 tatacctttt tgagctcttt gcacatctcc atctgcagct tgtaaaagac gtgttaaaat
    12061 attttccaca tcctcaccta catatcctgc ttcagttaaa gaagttgcat cacaaattgc
    12121 tataggtaca tctaaaaatt tagctaaagt ttgtgccaat aaagtttttc cacttcctgt
    12181 tggcccaaca agtaaaatat ttgacttaaa aagctctgta tcatcatctt gaagttcggc
    12241 tttaaaaagt cttttataat gattgtatac tccaacgcta aaaacttttt tagctctatc
    12301 ttgtcctatg acataacgat ctagataagc ttttaattct tttggagtga tatctttaaa
    12361 ttctgtatta tggctttgtt taggttcttt aaattctttt tcttctccat aaataatact
    12421 ataagcacct tcaacgcaat attcacaaat aaaagcatca tcattttcat ttgctaaaat
    12481 ccttctttgt ggattctcca cttcattgca aaaactacat tttctaggca ttatttttac
    12541 ccctatagac aggaattccg cgctttgttt ctaatataaa atggcacatt tttttaacat
    12601 tttcactttc ttgattttca agcaaatttt tagcattttc ttttaaatct ccttgtctaa
    12661 ataaagtttt aaaagctcta ctaagtctat ctacttcatc tttatcaaaa cgacgacgaa
    12721 tacctactaa atttaaactt ctaatacttg cacgatttcc ttctgctaaa caaaacggta
    12781 ctatatcctg agaaagtgca cttgctcctg ctatcataca accctcacct actttgacaa
    12841 attggtgaat aggtgtaagc ccgcctacaa ccgtaaaatc tccaagctct acatgtcctg
    12901 ctaaagttgc attattagct aaaataatat tattacctaa aagacaatca tgagcaatat
    12961 gacaataagc cataataaaa gcattatcgc ctatacgagt aaaaccatct cctttagctg
    13021 tacctgaatt tatcgttgca aattctctaa tagttgcatt ttttcctata acaacaccgc
    13081 ttttttgctc ttctttataa gatatgtcct gaggaatatc gcctactata gcataagaaa
    13141 atacacgaga atgatcacct atagttgtat ctgaaagaat tcgagcacct tgtttgatga
    13201 caacatcatt acctatttta gcatctttgc ttacataggc ataagcttct attacaacat
    13261 cgtcaccaag ttgtgcaccc tcttcaatca ccgcacttgg atgaattttt ttcattattt
    13321 atccactatc atagctttaa gctcggcctc tgcaactaaa tttccatcta caaaagcttg
    13381 ccctttaaaa atccacatat taccacgatt tttaaccacg ctcatttcat aatcaagcct
    13441 atctccagga cgcacaggat ttctaaattt tgctccatct atgcctgtga aataaactac
    13501 tttacttttt ggatccactt tatcttccat actttcaaaa gctaaaactc cacctgtttg
    13561 agccatacct tctaaaatca aaactccagg ataaatagga tgccctggaa aatgtcccat
    13621 aaaaacatgg tcacttatac tgatgttttt atatcctcgc accacttctt taacttttaa
    13681 ttctgtaatt ttatctacta gtaaaaaagg ataacggtgt ggtaagattt cttgaatttg
    13741 cattacatct atcattatta aattaacctt gaaaacaatt aaaaatttta ttatataaaa
    13801 aaatcattaa aaattacatt aacaaaaaaa gtttttctta ataaatttct taaatttttg
    13861 caagcacctc ttgattatca tgataaattt cactttttgc tatcacttca tatcttgaag
    13921 gtaaaatatt ttcaaggatg ataatagggc taagattata agttccaaac aatttattgc
    13981 gccatctaac ttctgcttga atacttaaag gtttttttaa aaaatcttca aaatttttcc
    14041 atttgttttt aaaaaacgca ttaaaacgcc aaaattccac aaaaaccatt tcatctttgg
    14101 tacttctata aaagccttct tttaaatttt gttttaaatt ttcctcatct aaagaaaatc
    14161 ttgtataagc gtttttaaaa tgcgaataaa ataaaatatg agatttaacg ggctttttat
    14221 ctaattttat caaagcgctt aaaagacgat aatttaaaaa tttctctctt aaaatttgaa
    14281 attttatacc ctttttttcc cataaaacta cttttttata aagagctatt cttgcttcta
    14341 tacttgcagg taaaatttgc ttatttacag gagacattaa ttcatcaata aaattcttat
    14401 cttgtttttg ttttttaagc ccataaatac aaccacaata gttttgatga taaagcattt
    14461 ctttttttgc taaagcaaac tgcctttgag tgccaccatt tttacgaaaa tcaggagcta
    14521 aaaactctac cccataaggc tcacattctt tttgtaaagc attttttaac tgttctaaat
    14581 cttttttagg gctggttaaa agcgtagtag taagcttttt ttctcctatt ttagcagcaa
    14641 atttaacact agatcccatt cttacatcaa agcaaatttc acaccttgca cctttttcag
    14701 gctcatcttc ataaccacgc acagcattaa gccatttttc atactcatac tcacctttat
    14761 gaagcttgat gccaagttta tcacaagatc tttttacgtc taaaaatctt agttcgtatt
    14821 cgcttaaagg atggatattt ggatcataaa aatatcctat gattttttca tcaggataag
    14881 tctttctaag ttcttcaata aaataatggc tatctacgct acaacaaata tgtactagca
    14941 ttaaagactt tcaagcactt ttaaagcatg atcttttaca cgaacattac tataaatttg
    15001 agcaatctta cctgtttcat cgataacaaa agtagaacga ataagacctt cgtattcttt
    15061 tccgtaattt ttcttaagcc cccaagctcc ataagcttta gcaacttctt tttcactatc
    15121 gctaagtaaa atatgtttta aatcaaattt agagataaat ttttcatgac ttgccacgct
    15181 atcaggactg ataccaataa tcaccgcatt tttaccacca aatttatcat aatttgcact
    15241 aaaatcacaa gcttctgtag tgcaacctgg ggtattatct tttggataaa aatacaaaat
    15301 cacctttttg ccaataaaat cttttaatgc tatttttacc ccatcttgat ttaaaagctc
    15361 aaactgaggt gctttatctc ctatatttaa actcatttat ttgcctttgc tttgatagct
    15421 tctacacttt ctccgccaaa gcctatgtca taattttcca catcttctaa aaccacaaca
    15481 actctttctt tacttttatt atatttcgtg cttaaaagtt cggtaatatc agctataagt
    15541 tccgcttttt gttccttgct taaagacggc tttgctaatt tgatatttac taatggcata
    15601 atttctcctt tttaacgata atttttcata attatttcaa aaaataccta atattttttt
    15661 taacaaaaag ccttaattta ataaaagctt attgttagta tatttttgat aaaatcccga
    15721 tttattctta aaataatatt ttttaagaaa taaacaacta taaaaggtaa aaaaatgatc
    15781 tcagcagata aaatttggat ggatggaaaa ttagttgatt ttaaagatgc aactttgcac
    15841 tttttaaccc attctttgca ttatggcaat gctgtttttg aaggaactag agcctataaa
    15901 acagataaag gcttagcaat tttcagactt gaagatcaca ccaaaagact tttagagtct
    15961 gcaaaaatta ctcttttaaa ttgtcctttt tctcaaaaag atcttgaaaa tgcacaaatt
    16021 gaactcttaa aagcaaacaa ttttcaaagc aatgtctata tccgtcctct gattttctta
    16081 ggcgatggag ttatgggact ttatcatata aaagctcctg taagagttgg aattgcagct
    16141 tgggaatggg gtgcttacct tggagaagaa ggtttagaaa aaggcataaa agtaaaaatt
    16201 tcgtcttttg caagaaatag tgttaaatca tgcatgggaa aagctaaagc aagtgcgaat
    16261 tatcttaact ctcaaattgc aaaatttgaa gcaattgaag caggctatga agaagctttg
    16321 atgcttgatg aagaaggttt tatcgcagaa ggaacaggag aatgtttctt tattgtaaaa
    16381 gatggggttt taatcacacc tccaaatgat ttttctttaa aaagcattac tcaagataca
    16441 gtgcttaaaa tcgctcatga tcttggtatc accgtgcttc gccaaagaat ttcaagagat
    16501 gaagtttata ctgctgatga agcatttttt accggaacag ccgctgaaat cacacctatt
    16561 aacaatattg atgcaagaat aataggaaat ggtttaagag gatctgtaac taaaaaactt
    16621 caagatgctt attttgatgt agtttatgga cgcaatgaaa aatacgcatc tatgctaact
    16681 tatatttaaa aaaggaaata aatgccagct gatttgaatg attatttcaa taaaaaaaat
    16741 ggaaattcta acaataacgg aaacaacaac cgtcaaaatt tcaatttcaa agcaccagaa
    16801 tttaatttta aaggttttgg gaaattctct ccatttgttt atggggtgat tattattatc
    16861 ttatttttaa tcgttgcaaa accttttatg gtgataaatt ctggggaaat ggggattaaa
    16921 tcaacaacag gtaaatatga cccaaatcca ttagaaccag gacttcactt tttcttacct
    16981 tttgtacaaa aaataaccat aatcgatact agagtaagac aaatcaacta tgcttctata
    17041 gagggaagta atgaaaattt atcttcaggt tcaggtgtta ttaataaaaa tagtatttct
    17101 gtacttgatt ctcgtggatt gcctgtatct attgatgtta cagtacaata ccgtttaaat
    17161 cctttgcaag ttcctcaaac catagctact tggagcttaa attgggaaaa taaaattatc
    17221 gatccagttg ttcgtgatgt agtgcgaagt gttgtaggaa aatatacagc cgaagaactt
    17281 cctactaatc gtaatacaat agccgctcaa atagaagaag gtataagaaa aaccatagaa
    17341 gcccaaccaa acgaacctgt agaacttcgc gctgtacaac ttagagaaat tattttacct
    17401 tcaaaagtaa aagaacaaat cgaacgcgtg caaattgcaa aacaagaggc tgaaagaact
    17461 aaatatgaag tagaaagagc taatcaagaa gccttaaaaa aagctgcttt agctgaaggg
    17521 gaagcaaatg caaccataat cagcgccaaa ggtaaagcta tggctgttaa aatagaagca
    17581 gatgcacaag cttattctaa caaagaaatc gcaaacagcc taaacacccc tttgctaaat
    17641 ttaaaacaaa ttgaaactca aaaagaattt aatgaagctt taaaagtcaa tcaagatgct
    17701 aaaattttct taactccagg tggagcagtg ccaaacattt gggttgatac caaagatgct
    17761 aaaaagcaaa gtgctgccaa catgaactaa aggatacaca agtggagaaa ctaagagaaa
    17821 tcgtgctttt ttacactact catttatatt tagtagatta tatgctgatt ttattagttt
    17881 tttttctctt cacttgtgtt ttacttcttt gtgtattttt acgccataga cctatagcag
    17941 cactttttat tattgcattt gatattatta tttgtttttt agtttatatc tatgggtata
    18001 aactaataga caatgaagta agaactcgaa aaatcgctat tacagatcaa aaaatgatac
    18061 aaagctcaaa tgatttaatt gttgatttta acattacaaa taattcaaaa aataatttta
    18121 aagaatgtaa aattacagct aaaatttttg cagataaaat acctaatgat aatatcatag
    18181 aagaatataa aaagaaattt atccctttta gacaaaaaag tagagaaatt aaagatctaa
    18241 agaaaaacgc aacccaagtt caaagaattg cttttgaaaa ttttaactat gaaaataact
    18301 ataccatacg cttagtttcg gagtgttttt aatgcatttt acgatttttc atattatagc
    18361 ttttatcatt ttacttattt gctttgcctt gatttgtatt ttaatctttc taaaagtcaa
    18421 acagaaagaa atggctttga tttcttatac catagctact atttttaccg cacttttgat
    18481 atattctatt tttctaacaa tcaatcaatt caccactcaa gccgatctta gcaaactaac
    18541 ctacacaaga gatctaagac atgaaagcgt tatagtaagt ggaaaagttc aaaatcttac
    18601 taaatttgaa atcaaaaaat gctatttgat acttagcata ttaaaccaac aacaagtagg
    18661 aggtgaaatt ttcaatgata aaaatatccg taacgctaaa atgcaaaata caagtgtttc
    18721 ttatactata gaaatcatag acacactccc gggtaatacc tataaagaat ttagagctag
    18781 cgttcctttt cctccaactt ttaataatcc tgaattttat cacaccttaa aatgtatttg
    18841 attcaagaaa tcaactagca aaaattctaa aatacattaa ttattcacat aacaaaacaa
    18901 taattccgct ataaattata taaatattaa taataattta agttttatta atataatatt
    18961 tattaatata gaagataagg agtcaatcaa cctttaaatc taaaagcact ttgctaaatg
    19021 agagttaaaa atgggaggga aaataaagct ataaaaagct tatatcttaa aactcaacga
    19081 gatcgaaatg ggctcagaag tattaatctg ggctcaaaac aaactttttt tataattgaa
    19141 gttttatctt ttctaaaaaa caataagtaa aatataatta actcaaattt attatatcaa
    19201 taaagaataa tattaaagca ccaaaaataa gtaatcttag taaaaattat acaattaagt
    19261 aataattaaa ttgcatagta ttaaaataca tttacatcaa atttatatta aggaattagt
    19321 aatgaaaaaa attttcattt cttttgttgt cctagcgaca tgtttatggg caaaaaatac
    19381 cgcctatacc gatgaagttg tatcgcttta tcttaataaa gatgatacta aagtcatagg
    19441 aagactttta cctacaaatc cttttgaagt gttaaaaagc gaaaataaca gggttttgct
    19501 aaaaattgat ggttatgtaa atcctaaagc accttctgtg atttatttca atgactctca
    19561 aagaattatt gttgcagctt tttctaaaaa tacaaaatta aatttctctc aaagaataac
    19621 tggaaaaaat ggcaaatggg ataaggtaag ccttgaaatt tgggcagata aaaaagaatt
    19681 tgtcaaagac aataaagaaa tgttaaatcg agccaaagag ctttttgtaa ataactgcgg
    19741 aatttgccac gctatccaca aagaaaaaga atttacagct aatgcttggc ctgcaatttt
    19801 ccgttctatg gctgatagaa caggtattga taaaaaagac agatggctag ttatagaata
    19861 cttacaaaaa aacgcaaaag attttaaaac aaaataagga gaaaagcatg ctagatagaa
    19921 gaaaattttt aaaaattgga gcgagcttaa gtgctttacc tctcattcca agcttaagtg
    19981 caggaaaaac cgtagaagct tcaaaagtta gcctcggact tgtaaaaaat ggagaagtga
    20041 tcaccgcagc acactggggg attttaaaac ttactataaa agatggcaaa atagtaaaaa
    20101 gtgaaccttg ggaaaaagtt acaaaaatgg ataatccttt acagcactat accgccgata
    20161 tggtttataa atctcgtgtg aagtaccctt atgtgcgtaa atcctacctt gaaaatcctg
    20221 acaatcctaa acctgaactt cgcggaaaag atgagtttgt tcgcgtaagt tatgatgaag
    20281 cgatcaaact catcgccaaa gaacttaaaa aaacaagaga tagtaaaggc gcaagtgcga
    20341 tttttggtgg aagttatggc tggaaatcaa gtggaaatat gcaaaactca cgtatcttgc
    20401 ttcatagatt tttaaatgta acaggtggat ttgtaggagc tacaggggac tattctacag
    20461 gagcttctca agtgattatg ccttatgttg taggatcgat tgaagtttat gagcaacaaa
    20521 cctcatggga aaatatctta agtgattcta aatatgttgt gatttggggt gctgatccac
    20581 tttctacttt acgtatagct tggacttcaa acgaacaaag aggtttggca tattttgaaa
    20641 aacttaaaga cagtaaaatc aaagtaattt gtatagatcc tgtaaaaacc actacagcaa
    20701 aatttttaaa tgccaaatgg atagctccac gcccaaatac cgatgtagct ttaatgatgg
    20761 gcatggcaag ccatttaatc gctaagaaaa aagtcaatta cgagttttta gacacttaca
    20821 ctacaggctt tgataaattt aaagactatt tagaaggcaa agaagatgga gttaaaaaag
    20881 ataccaaatg ggcaagtaaa atttgcggta tcgatgaaaa aactatcaaa aatttaactg
    20941 aaacttttta tgataattct actatgatta tgagtggttg gggtatgcaa agagcacatc
    21001 atggcgaaca gcctcactgg atgttagtta ctctttgtgc gatgttagga caaatcggca
    21061 caaaaggagg tggttttgga ctaagctacc attacagcaa tggtggtgtt ccaacttgca
    21121 aaggcggagt gatcggcggt atgacagcag gtagcttagg gatttggaaa aatggtaaat
    21181 ttaaaggctt aagcaaagca gaagcttcaa gcgaaggtgc agaatggctt caaaatgcag
    21241 cgagttattc tttccctgta gcaagaatcg ctgatgcttt acttcatcct ggaaaaacca
    21301 tagatcataa tggtgctaaa atcacttatc ctgatattga ttttatctac tgggtaggtg
    21361 gaaatccttt agtgcatcat caaaatacca acactaatgt aaaagcatgg agaaaaccac
    21421 gcaccgttgt ggtaaatgaa atttactgga ctccaacagc taaaatggca gatattgtta
    21481 tgcctgtaac ttcatcttat gaaagagatg atattaccat gacaggagat tattcaaata
    21541 tgcatatagc tcctatgaaa caagcagttg agcctgtggg tgagagcaaa gatgattatg
    21601 taattttctc tgatatttgc aaaatttatg gaaaagatgt ctttaatgcc tacacagaaa
    21661 atggcaaaaa agctaaagat ttcatcaaag aatactacaa tagcgcccta aaacaaactc
    21721 aaagttttgg tgaagctttt gctactccta tgccaagttt tgaagaattt tgggctaaaa
    21781 atgaaccaat cacttttgaa ccaacagctg aaagtttaga atggactcgt ttttcagaat
    21841 ttatagaaga tcctatctta aatgctctgg gtacagattc aggactcatt gaaatttact
    21901 cagaaacgat taaaaattat aattatgatg attgcaaagc ccaccctact tggtttgagc
    21961 ctattgaatg gcttggaaat gcaagcaaag aagcaccttt ccacttgctt acaaatcacc
    22021 caagagatcg cttgcactct caactttgcc acacaagctt aagagatact tatgcaataa
    22081 aagatagaga gccgatttta atcaattcca aagatgcaaa aaaacttggt ataaaaaatg
    22141 gcgatgtagt gcgtgtgttt aataaacgcg gtgaagtttt agcaggggcg gttgtaagtg
    22201 atgaaatcat gcaaggggtt gtaagacttt gcgaaggtgc ttggtatgat cctaatgaaa
    22261 acggactttg caaatgtgga aatgcaaatg ttttaaccat ggatatacca acttcaaaac
    22321 ttgccaatgg caatatctct cacacaggac tcgtaaatat agaaaaattc aaaggtgaac
    22381 taccaaaact tactgccttt agcgccccaa aaggtgcgaa ctaaatttaa gaaagccgca
    22441 aggctttcta ttgtccaagc aaatttaaac tcaaagccat tattgccatt cctgctataa
    22501 gtccatataa actatcatga gccttatcat aagtttttgc agcgggcaaa agctcatcaa
    22561 gagatataaa aaccataatt cctgcaatca cagcaaaact tatagctaaa gtaagatcgc
    22621 ctataaaagg caataaaatc aaagctccaa caaaagcacc caaaggctct gcaaaacccg
    22681 aaagagctga ataaataaaa gcttttttct tatctcctgt agcatgataa atcggcaaac
    22741 tcacagccaa accttctggg atattgtgta tagccacagc tatagctata gcaattccta
    22801 aagtaagatt atcaagactt gaaataaaag tagcaaaacc ttctgggaaa ttatgtatag
    22861 caatagccaa agctgtaaaa atccctgtac gttttaaagc tttagtattg atctgatgca
    22921 acttttctcc aggatgaaat ttcggaggat tttgtccttt ttggggtaag ggacaaattt
    22981 ttaactcgct taaatcctct ttaggttcgt gaggattgac atcttcgggg attaatttat
    23041 caatcaataa agatattaaa attccaccaa aaaaacaagc taatcccaaa agctcagccc
    23101 aatgcgaatc atagtgattt ttaaaatctt taagtgcagt aggtaaaatt tccatgaaag
    23161 aaatgtatat cattactcca gctgaaaaac caagccccaa agaaagcact cttaaatcat
    23221 cttttctgga aaaaaaggct attatagaac ctatagccgt agaaaaacct gcaaaaagag
    23281 tcaatagcat tgcgataaaa atttgttcaa atgtaaattg cattaatatt cttaaataaa
    23341 taatatttta aaactcttta tatttataaa aagttaatac ttggtaaaaa tatacaaaat
    23401 aattaaaaat ttttgatttt ttatgtaaaa aattcacttt ttatacgctt tttctcttat
    23461 tttttgctag aataatattt ttattttatt ttcaatataa atataggagt tataatgcaa
    23521 aaaatgaatt caggtaaatc cgttggaatt tcagccaagc ttacactatg ggttggaatt
    23581 ttagttgtat taattttagc aatcacaagt gctgttagtt actttgatgc caaaaatcac
    23641 acatatgaat tgctaaaaga aaatcaatta aaaactatgg atgatgttaa agtaactttt
    23701 gaaaactatt ccaaaagcaa gcaaaaagct atagaggttc tagcatatga aagtgctaaa
    23761 aaattagaag atgaaaatat ttcactgctt ctagattctt ttaagaaggc gtttgatttt
    23821 gatattgttt ttattgcgtt tgataaaaac aacaaaatgc ttttgtcaaa tggaacaatt
    23881 ttagataaaa aatcaaattt tgacattaca aaacaaattt ggtatcaaga agcaaaaaat
    23941 aacaaaggca tcacaataac tcaaccatat aaatccccta tagatcaaga gattggtata
    24001 acttatgttt tccctattta taaaaataat caacttatag ctttcgttgg aggcgattac
    24061 aatctagata aattttccaa agatgtatta tctttaggac actcatcaac tacttatgct
    24121 gctgtttatg actctgaagg aagaattatt tttcacgaag tgcttgatag aattttaaca
    24181 aaaaacactt taagcgttaa tattgctaac accataaaag aaaaccctga atatatagat
    24241 ctaaataaga gagatattct ttttcctgta tttgatgata aaggtatcaa atatgaagca
    24301 atgtgcgata caagttccaa tggattatat cgtatttgtg ctgtaacttt agatagtaac
    24361 tatacttccg ctgttaattc tattttaatg aaacaagtta tagttggtat tatagctata
    24421 atcatagctt taatcttgat tagattttta atcagcagaa gtctctcccc acttgcagct
    24481 atccaaacag gtttaacttc attctttgat tttatcaact ataaaacaaa aaatgtttcc
    24541 actatagaag taaaaagcaa tgatgaattt ggacaaatct caaatgctat caatgaaaac
    24601 attcttgcta ctaaaagagg cttagaacaa gacaatcaag ccgttaaaga atcagttcaa
    24661 accgtatcag ttgtagaagg tggtaattta acagcaagaa tcactgctaa tccaagaaac
    24721 ccacaactta ttgaacttaa aaatgttcta aatagacttc ttgatgcttt acaagctaga
    24781 gtaggttctg atatgaatga aattcaaaga gtatttaata gctataaatc tcttgacttt
    24841 actactgaag taaaagatgc caatggagct gtagaggtaa ctactaatgc actaggacaa
    24901 gaaatc
//
LOCUS       DAEDTT010000012        24147 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.012, whole genome shotgun sequence.
ACCESSION   DAEDTT010000012 DAEDTT010000000
VERSION     DAEDTT010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24147
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.012"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..428
                     /locus_tag="KLC54_000366"
     CDS             <1..428
                     /locus_tag="KLC54_000366"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176776.1"
                     /translation="YTKKYLLSFIKKYQKTQFYLIIPSYSRLNYRKLSYGEYYNKDSV
                     LFSNYYAILSWIIQETQKYPNVKIYGFDDLDYADNIKNYKDPAHYNTDMNSMQLNAIR
                     DNTHILNTQNIVKYLNTMERKIKEFDLTPFVEYIKNQNF"
     gene            complement(432..992)
                     /gene="gmhA"
                     /locus_tag="KLC54_000367"
     CDS             complement(432..992)
                     /gene="gmhA"
                     /locus_tag="KLC54_000367"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HBD9176777.1"
                     /translation="MINLVEKEWQEHQKIAQESEILKGQIAKAGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSPNVLEAFKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDEGF"
     gene            complement(989..2374)
                     /gene="rfaE1"
                     /locus_tag="KLC54_000368"
     CDS             complement(989..2374)
                     /gene="rfaE1"
                     /locus_tag="KLC54_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HBD9176778.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDKSGKFLQENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDISAILLENELIALFDEKIKDFKAVVLSDYAKGVLTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFALRYSIITLSEAGIALFDEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLASGIEIF
                     KACELANEAAAVVVSKIGSMSVSFDEIKSFNRVDFEKKIKNKEELLTLLKQNDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDVLIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILIKGADYKDKLVVGADIVSKVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(2367..3320)
                     /gene="rfaD"
                     /locus_tag="KLC54_000369"
     CDS             complement(2367..3320)
                     /gene="rfaD"
                     /locus_tag="KLC54_000369"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HBD9176779.1"
                     /translation="MKIAITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIKDFRPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEKPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPCLFEGSDQIYRDFT
                     YIKDVISANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYRPKFTLEEGIKDYLGEIKRLFEKEVNA"
     gene            complement(3321..3881)
                     /gene="gmhB"
                     /locus_tag="KLC54_000370"
     CDS             complement(3321..3881)
                     /gene="gmhB"
                     /locus_tag="KLC54_000370"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HBD9176780.1"
                     /translation="MFIFFLKKLYYNVFMKTKALFLDRDGVINIDKKYVYKIEDFEFC
                     DGIFELCRYFLARNYLLFVATNQSGIARRYYKESDFLKLCDYMLKEFAKQDVKIDKIY
                     HCPHLEGCECRKPKAGMLLKAKDEFDLDMKNSIFIGDNLSDMQAGLNANIGTLILVNE
                     EKKEGDFFRQFKNLKEILSFFKEKDI"
     gene            3963..4265
                     /locus_tag="KLC54_000371"
     CDS             3963..4265
                     /locus_tag="KLC54_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HBD9176781.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(4288..4494)
                     /gene="ccoS"
                     /locus_tag="KLC54_000372"
     CDS             complement(4288..4494)
                     /gene="ccoS"
                     /locus_tag="KLC54_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HBD9176782.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALNKKRLS"
     gene            complement(4491..6848)
                     /gene="cadA"
                     /locus_tag="KLC54_000373"
     CDS             complement(4491..6848)
                     /gene="cadA"
                     /locus_tag="KLC54_000373"
                     /EC_number="7.2.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cadmium-translocating P-type ATPase"
                     /protein_id="HBD9176783.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKFFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLSHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGLFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMHSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFNGKEFAPKKVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGESIPKLIQKEDEIFSACMVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLSAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKVLDLNELYNFVKLSKHPISQNIASYLKQKGAKDLNLNFKKHSSIQAKGLS
                     AELNEELLLGGSSKFLQEKSIATKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIARKLEIQNYQASCLPEDKMKAIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            6958..8256
                     /gene="rho"
                     /locus_tag="KLC54_000374"
     CDS             6958..8256
                     /gene="rho"
                     /locus_tag="KLC54_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HBD9176784.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IRKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            8260..9789
                     /locus_tag="KLC54_000375"
     CDS             8260..9789
                     /locus_tag="KLC54_000375"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HBD9176785.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSILIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQEIKQENTTNITPRITPAPIIPNLEKKIEKNAYEILLDSIYDRDFDLA
                     ECFKQSTKFISFENNTLNISSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKAL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGEPSIE
                     N"
     gene            complement(9786..10307)
                     /locus_tag="KLC54_000376"
     CDS             complement(9786..10307)
                     /locus_tag="KLC54_000376"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HBD9176786.1"
                     /translation="MQQKCFCISKMIRFSKIIILLTVASLAGIVVFGNVTDYNSNFQF
                     VSHVMSMDTKPDYLGNAIVYRAITSPVIHHIGYIAIILFETFITLTALKGAYDMFKAR
                     NLDAQSFHNAKIFGIISLTCCCILWFFAFQVVAAEWFGMWMSKVWNGLPDATRLVTYM
                     FLALIFISLKNDD"
     gene            complement(10379..12478)
                     /gene="copA"
                     /locus_tag="KLC54_000377"
     CDS             complement(10379..12478)
                     /gene="copA"
                     /locus_tag="KLC54_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HBD9176787.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLEDQEKRKDIIAKIKNLGFEILEDEQSLNAYKVKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGLKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGTLRIKANKKAMDSTLEQIKNLVFEAGNIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWALKADLNTAFLHACAVLLISCPCALGLATPIALVVASSNAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKENLSIFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDQIFDLKGEGRVIVGSGIKYKEDSDIYLAGSAKFLHENEIDTKESDIFFDTFKEYVR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKKQNLKTFILSGDHVKNVEKIAKELQID
                     EFYAQLKSEEKLRIIQKFKKTLFVGDGINDAAALSAATVSMSFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRSIIKLNLFWAFIYNVLCIPIAAGFVPFITLSPHIAALAM
                     CFSSITVVLNSLRLKRI"
     gene            complement(12478..12672)
                     /locus_tag="KLC54_000378"
     CDS             complement(12478..12672)
                     /locus_tag="KLC54_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HBD9176788.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIIERL"
     gene            complement(12662..13612)
                     /gene="czcD"
                     /locus_tag="KLC54_000379"
     CDS             complement(12662..13612)
                     /gene="czcD"
                     /locus_tag="KLC54_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HBD9176789.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSVDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSGIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCDLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(13686..13949)
                     /locus_tag="KLC54_000380"
     CDS             complement(13686..13949)
                     /locus_tag="KLC54_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HBD9176790.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQASRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(14020..14514)
                     /locus_tag="KLC54_000381"
     CDS             complement(14020..14514)
                     /locus_tag="KLC54_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HBD9176791.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIALAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(14511..15287)
                     /locus_tag="KLC54_000382"
     CDS             complement(14511..15287)
                     /locus_tag="KLC54_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HBD9176792.1"
                     /translation="MEKPDIQRLTNFLIVYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KAKVVFEQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVGILICCIALGIYMTLSISDFGILR"
     gene            15354..16280
                     /locus_tag="KLC54_000383"
     CDS             15354..16280
                     /locus_tag="KLC54_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HBD9176793.1"
                     /translation="MAKIGIVGLGYVGASSAYSIVTQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELQNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKFLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASVLGQNLLDFYKQKLGKDLDIQKLEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDMAFSMPAIIGKDGIEK
                     VFELKFNEKEKIKLENSKQQIKNAIQSVKDKI"
     gene            complement(16277..16879)
                     /locus_tag="KLC54_000384"
     CDS             complement(16277..16879)
                     /locus_tag="KLC54_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HBD9176794.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGKLDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEVKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(16960..17187)
                     /locus_tag="KLC54_000385"
     CDS             complement(16960..17187)
                     /locus_tag="KLC54_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176795.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(17198..18607)
                     /locus_tag="KLC54_000386"
     CDS             complement(17198..18607)
                     /locus_tag="KLC54_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HBD9176796.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAEI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVGGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGSPLDLDAGRNTRSSGP
                     VLYVDRAYLDYYITPEWIATIGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEESGKVRDWMSDQKDADANLYYAAVEGELPIEG
                     MGDNLIIFNVAHMTDFALPIPGSTTLLGDDDGVINLGNLTLANIHFENYKAFGTNFNY
                     FVSLGYSNGANAHTLSANPTVQSQLEINEKDGYAVHVGGRYDFTKALKVGYEFFWGSR
                     YWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTNIQNIWGNRGLPFGG
                     AKKDKARADNIMLMYNVKF"
     gene            complement(18771..19253)
                     /locus_tag="KLC54_000387"
     CDS             complement(18771..19253)
                     /locus_tag="KLC54_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HBD9176797.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGIGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(19263..19970)
                     /locus_tag="KLC54_000388"
     CDS             complement(19263..19970)
                     /locus_tag="KLC54_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HBD9176798.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFARKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIEAKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            20079..20420
                     /locus_tag="KLC54_000389"
     CDS             20079..20420
                     /locus_tag="KLC54_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HBD9176799.1"
                     /translation="MNIAKKELFVAWFFLIAAIIFEVLGTSFLKMENQILGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIVLSIVG
                     IIMINIGEVKE"
     gene            20420..20728
                     /locus_tag="KLC54_000390"
     CDS             20420..20728
                     /locus_tag="KLC54_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HBD9176800.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKHKIWGLAAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(20746..22338)
                     /locus_tag="KLC54_000391"
     CDS             complement(20746..22338)
                     /locus_tag="KLC54_000391"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HBD9176801.1"
                     /translation="MKSIIFNEIKKILECDFTLENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALANPNDFSKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFDTEYYVNDAGNQIYLL
                     GLSILLSVKENILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLILIKQNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVIDEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMRADLQSLNQDGVNL
                     LFEALNLKAILNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSINENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(22350..22589)
                     /locus_tag="KLC54_000392"
     CDS             complement(22350..22589)
                     /locus_tag="KLC54_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HBD9176802.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTSADASIDKTKKA"
     gene            complement(22591..23208)
                     /gene="gmk"
                     /locus_tag="KLC54_000393"
     CDS             complement(22591..23208)
                     /gene="gmk"
                     /locus_tag="KLC54_000393"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HBD9176803.1"
                     /translation="MQGFILLISGPSGAGKSTLLKKLFDEFEDELYFSISSTTRKPRE
                     GEKNGIHYHFISHEEFQKGIDGDHFLEWAKVHENFYGTSLKHTQDALDNGKIVVFDID
                     VQGFKIARQKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKELS
                     DYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(23211..>24147)
                     /locus_tag="KLC54_000394"
     CDS             complement(23211..>24147)
                     /locus_tag="KLC54_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HBD9176804.1"
                     /translation="EEIEKQELLNDSKANTLEMQEELNESQDDNANKALETQNLEDEN
                     LEQETTKEQTQEDIQTDLDLTLEDGGSQKEDLSQEHTALDTEPSLDELDDKNDEDLED
                     NKELQANISDFDDLPVVEEQEKEMDFDDIPEDAEFLGQAKDNEESEENLEEFSPVVEE
                     DVQDEMDDFISNLSTQDQIKEELAQLDELDYGIDSDNSSKVLEDFKDEPILDDTELGT
                     NEEEVVVPNLNISDFDALKESDIQEALGEEIVEKNEEPIVSNATKDDNSEEIVNELSQ
                     SIAGAITSSIKDDTLKAALKGMNMNININISFKED"
BASE COUNT         8374 a         4444 c         3118 g         8211 t
ORIGIN      
        1 attatacaaa aaaatatctc ttaagtttta ttaaaaaata tcaaaaaacg cagttttatc
       61 ttattatacc aagttattca agattaaact atagaaaact cagttatggg gaatattata
      121 ataaagatag tgttctattt tcaaactatt atgctatttt aagttggatt atacaagaaa
      181 ctcaaaaata tcctaatgta aaaatatatg gatttgatga tttggactac gctgacaaca
      241 taaaaaatta taaagatcct gcacactaca atactgatat gaactctatg caacttaatg
      301 ccataagaga taatacgcat attttaaata cccaaaatat agttaaatat cttaatacaa
      361 tggaaaggaa aattaaagaa tttgacttaa caccatttgt agagtatata aaaaatcaaa
      421 atttttgaaa attaaaaacc ttcatctata atctggcaaa gtgtgtgtat gattaaaata
      481 tgcatttctt gaattctagc tgtatcatcg cttggtacaa caagattatg gtcacaaagc
      541 ttattcatca ttccaccacc ctttccacta agccctaaac aaagcatatt aagttctttt
      601 gcttttttaa aagcttctaa aacattaggg ctttttccgc tcgttgaaat accgattaaa
      661 acatcatttt catttcctaa agcttccact tgtcttgaaa aaacaaactc aaaaccatag
      721 tcatttccta tagcactaag tgctgaagta tcggttgtaa gcgctatacc tgccaaagcc
      781 ttgcgttctt ttttataacg cccactaagt tcagctgcaa aatgctgtgc atcagccgca
      841 cttccaccgt ttccacaaat caaaatcttg ccaccttttt taagacactc gcacaaaagc
      901 tctcctgctt tagcgatttg tccttttaaa atttcacttt cttgagcgat tttttgatgc
      961 tcttgccatt ctttttccac taaatttatc attttttatc cttaatcttt tctatgatct
     1021 tactcgtact aaatccttct tcaaagtcga ttaattcaac ctttgaaacg atatctgcac
     1081 ccacaacaag cttatcttta taatcagctc ctttaatcaa aatatcgggt tttaaaaagc
     1141 ttataagttc taaaggtgtg tcttcatcaa aaatcactac aaaatctaca aaataaaaag
     1201 ctgccaacat acaagctctt tgaaactctg aatttacagg acgactctcg cctttgagtc
     1261 ttttcacact cgcatctgag tttaagccca caatcaaaac atcgcccaat cttttagctt
     1321 tctcaaggta ttttatatgt ccaaaatgca cgatatcaaa acaaccattt gtaaaaacga
     1381 tctttttatc attttgtttt aaaagcgtta aaagttcttc tttgttttta atttttttct
     1441 caaaatccac acgattaaaa ctcttaatct catcaaaact cacactcatg ctacctattt
     1501 tactcactac aacagctgcg gcttcattgg caagttcgca agctttaaaa atttcaatcc
     1561 cacttgccaa acaaaaagcc aaaactgcga tcacactatc gcccgcccct gttacatcat
     1621 aaacttctaa agctttagca ggtgcaattt ttaaaccctc atcaaaaagt gcgatccccg
     1681 cttctgaaag agtgatgata gaataacgca aagcaaaatc ttcttttaat tttttaatcc
     1741 ctttttctaa attttcaccc tctaaatttt caaatttcaa agcctctaaa gcttcttttt
     1801 tattaggcgt gagtaaggtt gcaccgctat atttactaaa atcactgcct ttaggatcaa
     1861 ctaaaacagg aatatttaaa gccttagctt tttttatcac agccttacaa actttagggg
     1921 ttaaaacacc tttggcataa tcgcttaaaa ccacagcctt aaagtcttta atcttttcat
     1981 caaacaaagc aataagttca ttttcaagca aaattgcact tatgtcttct tcatctagtc
     2041 ttaaaacctg ctgattgtgt gccataatgc gatttttaaa aggggttttg cgtccttttt
     2101 ggatcaaaaa ttctcctttt aaattttctt gtaaaaattt cccactctta tcatcaccca
     2161 caacaccgag cgcaaaaaca tcagctccca agctttttaa atttgcataa acattcgcag
     2221 ccccgcctaa tcttttatct tctttaaggg ttttagctac caaaacaggg gcttcaggac
     2281 tgatacgcga acaatcacac caagtgtaat tatccaccat aaaatcccct ataattaaaa
     2341 ttttaggttt ttgctgactt aaaaactcaa gcatttactt ccttttcaaa aagtcttttt
     2401 atctcgccta aataatcttt tataccctct tctaaagtga attttggccg ataatcccaa
     2461 gtttgatcta gttttgcctc ggtatgaaat tgataagatt ttacataagg atttgggata
     2521 tattcgcaag gcaaatcagt ctttaactct ttttgcaaaa tatcaactat atcttgaaaa
     2581 gttcttgctt taccactgcc tacattataa accccgcatt ttgaatcaag ggcgattaaa
     2641 ttggcactaa taacatcttt aatataagta aaatctctat aaatttgatc acttccttca
     2701 aacaagcatg gattttttcc tgctaaaatt tgatggccaa attgcaaaac catagaagcg
     2761 gttttgtttt tataaaattc gccttttcca taaacattaa aatatctaag tcctaccaaa
     2821 tgggctttat cgtagtattt tttcgctagt ttatccatca tcaattttga aaaagcataa
     2881 ggattttttg gtttttcatc tttacctacg gtttgcggac tttttgcatc gccataaact
     2941 gaagctgaac ttgcataaat aagctttgca ttaagatcta tgctaagttc tataaaatct
     3001 ttaaaagtat ttaaattggt ttgtaaaacc ttagtttgat caaaaaccgt agtgtctgaa
     3061 attgctgctt gatgaaaaat aatttcaggt ctaaaatcct taatcttttt taaaactttt
     3121 tcatcattaa tatcgcctgc aaaaagttct ccgtcaaatt caagcaaatt tttaaaatgc
     3181 ccaaaacttt gcaaatttcc attttcaaaa gtcgcactac tacgcatttt atcgatgatt
     3241 aaaatttcat gtttttcttg caaatttaaa gctagttgcg aacctataaa tcctgcgcca
     3301 cctgtgattg ctattttcat ttaaatgtcc ttttctttaa aaaagctcaa aatttctttt
     3361 aaatttttaa attgtctaaa aaaatcgcct tctttttttt cttcatttac taaaatcaaa
     3421 gtgccaatat tagcatttaa ccctgcttgc atatcgctta gattatctcc gataaagata
     3481 gaatttttca tatccaaatc aaactcatct tttgctttta aaagcatacc tgctttaggt
     3541 ttgcgacact cacaaccttc taaatgcgga caatgataaa ttttatcaat ttttacatct
     3601 tgcttggcaa attctttaag catataatca caaagcttta aaaaatcact ttccttgtaa
     3661 tatcttcttg caatacctga ttgatttgtc gctacaaaaa gcaaataatt tctagctaaa
     3721 aaatatctac aaagttcaaa aattccatca caaaattcga aatcttctat tttatagaca
     3781 tattttttat ctatattaat cacaccgtct ctatctaaaa ataatgcttt tgttttcata
     3841 aaaacattat aatatagctt ttttaaaaag aaaataaaca ttatctttaa tttcttaaga
     3901 tttttattaa aaataaagat atataatacc tagcaatcta atttttacta aggagaaaac
     3961 aaatgaaaaa attattagta gtttctgctt tggcatgtct tggtgtttct gcttttgctg
     4021 cagatggtgc tacacttttt aaaaaatgtg cagtatgtca tggtgcaaat gctgacaaag
     4081 tttacttaaa caaagttcca gctttaaaaa ctctttcttc tgctgaaaga cttcaataca
     4141 tgaaagaata ttcagaaggc aaaagaaatg cttatggtca aggtgcgatc atgaaactta
     4201 accttaaagg tttaactgaa gaagatttta aagctatcga agctcatatt gaaactttaa
     4261 aataatttct aaaaaaggct tttcttttta agaaagcctt tttttattca aagcttcttt
     4321 tttacgcctt tctaattcta tagcatcacg taaagaatcc tcatcatcat ttaaagtagt
     4381 aaatttataa tcatcatcaa attgtttatt cttaatcccc caaagcaaag ttgccaaaat
     4441 gataaaaaac gctaagatag aaactcctat catcatcatg attatactat tcattctttg
     4501 atccttaaag catttaaaac gactattata ctactaaaag acatagaaat agcagcaaat
     4561 aaaggattaa tcatacctaa aaaagccaaa ggtatggtac aagcattata gaacaaagaa
     4621 aaagcaaggt tttgcttgat aattttaaag gtgtttttag ataatttgat ggcttttttt
     4681 aaagaaagca agtcattttt caaaagcaaa acatcgctac tttctatagc tagatcactt
     4741 ccttctctta aagtcatcga aacacttgca tattttaaag ctagagcgtc atttacccca
     4801 tcacctacaa ataaaacttt gtaatttttg cttaaatttt ctatagcttt catcttatcc
     4861 tcgggtagac aagaagcttg ataattttga atttctaact ttctagcgat tttttccact
     4921 gctttttgat gatcgccact aagtatcatt aattctttct tttctttttt aagataagcg
     4981 ataagctctt ttgcaccttc tcttaaaaca ctatcaaact caaaaaaagc taaaatttta
     5041 ccttccttag caaaaataaa atgagtatta tcaaattcct tagttgcaat actcttttct
     5101 tgcaaaaatt tagaacttcc gcctaaaagc aactcttcat ttaactcagc acttaaacct
     5161 ttagcttgaa tacttgaatg ctttttaaaa ttcaaattta aatccttagc tcctttttgc
     5221 tttaaatacg acgcaatatt ttgagatata ggatgtttag aaagttttac aaaattataa
     5281 agctcattta aatcaagcac tttatctaaa aaaacctctt taagttcaag ctctatttta
     5341 gttaaaatac ctgttttatc aaacaccaca caatcacatt tgcttaaatc ttctatcaca
     5401 ctagaacttt taaataaaat atgctttttt aaagccctac ctaaggccac aagattgctc
     5461 acgggcgttg ctaaagccaa agcacaagga caagcgataa tcaaaactgc aatcgcattg
     5521 actaaagaaa tttcaaaact ctcttctttg taaaaaaacc aaaaagcaaa acaaataaaa
     5581 gcgatcaata aaaccgttct agaaaaataa gccgaaagac tattaaccaa actttcaagt
     5641 tttgcttttt tagaacttgc aagttctaaa agctgaataa tttgactgag ttttgaatcc
     5701 ttataaagct ttgttgcttc atactccaca cttccatcaa gcaccataca agctgaaaaa
     5761 atttcatctt ctttttgtat gagttttgga atactttctc catttaaaga agaagtatcc
     5821 acactcattt caccactttt acaaatccca tcgattaaaa ttttatctcc agttttaagc
     5881 aaaattctat cccctaaaca aaccttttga acttttttag gagcaaattc tttaccattg
     5941 aaaactaaaa cttcattttg taaaaaatca ttaagcccat ctatggtatc taaagcacgc
     6001 tttttgctaa acatctcaag atattttcct ataaacacaa agcaaattat catcgccaca
     6061 gaatcaaaat acacttcccc caccctaaaa aacatagccc ataaagaata aacataagcc
     6121 aaactcgctc cgctaatcac caatacatcc atatttaaac tatgcatttt taaagtttta
     6181 aaagcacttt tataaaaatg agagcccgta taaaaaagca caggagaaca aaggataaat
     6241 tcagcaaaat ttaaaatatc cttagtatcc ttatccatac cgctaaaaag tcctgcgtat
     6301 tttgccactg ctatccacat gatattcatc acacaagcta tagctacgac aagcttagaa
     6361 taaaattccc tttttaataa atccgctttt tttgaagcct tgctcgcatc ataagcactc
     6421 gctttatagc ctatactttc aataagtctt aaaatttgca ccaaagaaat gctttgttca
     6481 tcaaaaacaa tgcgtgcttt atggcttaaa tgattgatat caagttctaa aattccttct
     6541 tgcttggtta aaattttctc attaagccac acacaagctg cacattctat accgtgtatc
     6601 atgagataaa tttcactaaa tccttctttg gttttagtga taaactcatc ataatttttc
     6661 atttcatttt gaaaatttac agggcttagg gtttgatttc caagcttttc ataaaactca
     6721 tctagtccac tttcatgtaa aatttcccaa acgctctcac aacccttaca acaaaaaaat
     6781 ttacccttat actctatcat ttgagcttgt ttataatcaa gtttgcaatg ttcacatttc
     6841 ataatcattc tttaaaaaaa tattttttat aattataaac aaaatttgac aaaaagtgca
     6901 tttttttact aaaatcacat tttacaaaaa ttattctgct aaatcttacg aggacttatg
     6961 gaaaaagaaa aaaaacaaca tcaaagaacc cacgttccag tggaaggtta taaaatcgaa
     7021 gaattaaaat tattagatct agaaaatcta gttaaaatcg ctaatgaatg tgaaatcgaa
     7081 aacccaagag aatttcgccg tcaagaactt atttttgaaa ttttaaaagc acaaacaaaa
     7141 aaaggcggtt ttatactttt tacagggatt ttagaaattt cttccgaagg ttatggcttt
     7201 ttaagaggta tggactctaa tcttagcgat agtgttaatg acgcttatgt ttcaaattca
     7261 caaattagaa aatttgctct gcgtgtaggc gatatcgtta caggacaagt tagagaacct
     7321 aaagatcaag aaaaatacta tgctctttta aaaatcgaag cgatcaatta tctgccttta
     7381 caagaagcca aagaaagacc tttatttgat aacttaaccc ctatttttcc aacggaaaaa
     7441 atcaaactcg aatacgatgc gatgaagctt acgggtcgtg ttttagatct ttttacccct
     7501 ataggaaaag gacaacgtgg gctcatcgtt gctccaccac gcacaggtaa aacagaactt
     7561 atgaaagaac ttgctactgc tattgcaaaa aaccatcctg aaatgcattt aattgtgctt
     7621 ttagttgatg aaagacctga agaagttacc gatatgcaaa gatgtgtaaa aggcgaagtt
     7681 tttagctcta cttttgattt acctgcttat aaccatgtgc gtgtagctga actcgtaata
     7741 gaaaaagcca aaagaatggt agaaacagga aaagatgtta ttatcctgct tgatagcatc
     7801 acaagactgg cacgtgctta caacaccgca actccaagca gtggaaaagt cctaagcggc
     7861 ggggtggatg ctaatgccct acacaaacca aaacgtttct ttggtgcagc tagaaatata
     7921 gaaaatggag gctctttaac catagttgct acagctttaa ttgacacagg ttcaagaatg
     7981 gatgatgtga tttttgaaga atttaaaggc acaggaaata gcgaaatagt tcttgataga
     8041 aatatcgctg atagaagaat ttatcctgca attaatatca tcaaatcagg aacaagaaaa
     8101 gaagaattac tccaaggcgt ggcaaatctt caaaaaattt gggcgatccg ttcagcgatt
     8161 tctcaaatgg atgatgttga agcgttgaaa tttttatatt ctaaaatgct taaaaccaaa
     8221 gacaatgtag aacttttatc tataatgaac gagtaaaaaa tgcttcaagc tttagcgatt
     8281 aaatacaggc caaaaacctt tgatgaactc ataggacaaa aaacagttag tgtaagttta
     8341 aaatacgccc taaatcataa tcgcttagct catgcttatc ttttttcggg acttagagga
     8401 agtggaaaaa cttcaagtgc tagaattttt tctcgtgctt tagtttgcga acaaggacca
     8461 agcgatactc catgtggcac ttgcaaacac tgtcttgcag cacttgaagg caaacatata
     8521 gacattatag aaatggatgc tgcaagtaac cgtgggcttg aagatataca agccttaatc
     8581 gaacaaacca aatacacccc ttctatggca agatttaaaa ttttcatcat tgatgaagta
     8641 catatgctta ccccacaggc tgcaaatgca cttttaaaaa ccttagaaga acccccaagt
     8701 tatgttaaat ttatacttgc aaccacagat cctttaaaac ttccagctac tgtgctttca
     8761 agaacgcaac attttcgctt taaacaaatt ccacagagtg aaattttaaa tcatcttaaa
     8821 gaaattttac ttaaagaaaa tgttaaattt gaagaagaag ctttaaaatt tatagcaaga
     8881 agtggcaatg gatctttaag agatacttta accttgcttg atcaagccat tattttttgc
     8941 caaaatgaaa tcagcattag caagattacc gatatgttag gctttttaga tcctcaaaaa
     9001 atcaaagcct tttatcaggc tatcttaaca aaagacaagg aaaaagtttt tgcatactta
     9061 gaagaattac aagactatga agcctcaagc gtgattgatg aaatgctttt ttatttaaaa
     9121 gaaagctttt ttgcaaaaag tacagaattt tctattttaa tttatgaaag atttttccgt
     9181 attttatcaa aagctaaaaa tatgctttgc gatgatgatg gctttacgct ttgtgttatg
     9241 gcttttatga tgatggaagc aagccattta aaagaaattg atgcacaaat ccaagaaatc
     9301 aaacaagaaa atacaacaaa tattacacct aggatcacac ctgctcctat catacctaat
     9361 cttgagaaaa aaatagaaaa aaatgcttat gaaatcttgc ttgatagtat ttatgatagg
     9421 gattttgatc ttgcagaatg ctttaaacaa agcacaaaat ttattagttt tgaaaacaat
     9481 accttaaata taagctcaaa cgcacaagga caaaatcgcg atacactcaa taaaggtttt
     9541 aaactcatac aagaactttt taaagctaaa tttggagaaa atgctaaaat taatgtgcaa
     9601 aaagcactaa caattgatga aaataagctt caatccttaa ctcaagaatt accaaacaat
     9661 gaaaataaaa acatagatat tcaaagttct attaatatgc ttaaagaagg ggccaaaaaa
     9721 tttgacccac aagaagatct taaagaggct cttaaagatt gttttggaga gcctagtata
     9781 gaaaattaat catcgttttt aagagagatg aaaatcaaag ctaaaaacat ataagttacc
     9841 aatcttgtag catcaggtaa accgttccaa actttgctca tccacattcc aaaccattct
     9901 gcagcaacta cttggaaggc aaaaaaccat aaaatacaac aacaagttaa agaaataatc
     9961 ccaaaaatct tagcattatg aaagctttgg gcatctaaat ttctagcttt aaacatatca
    10021 taagcacctt ttagagctgt taaggtaata aaagtttcaa aaagaataat tgctatatag
    10081 cctatatgat gaatcacagg agaagtaata gccctataaa ctatagcatt acccaaataa
    10141 tcaggctttg tatccatact catcacatgc gaaacaaatt ggaaattaga attgtaatct
    10201 gtcacatttc caaaaaccac tatacctgct aacgatgcaa cggtaagcaa aataataatt
    10261 tttgaaaatc taatcatttt gcttatgcaa aaacattttt gttgcattta tactccttta
    10321 ataatatatt tttgtaatat taattatata taatatattc ttaataaaaa ttaaattttt
    10381 aaattctttt aagtcttaaa gaattaagca ccacggtaat agagctaaaa cacattgcaa
    10441 gtgctgctat atgaggactt aaagtgataa aaggtacaaa tcctgccgcg ataggaatgc
    10501 aaagcacatt ataaataaaa gcccaaaaaa gatttagctt aataatactg cgtgtttttt
    10561 tagcaagttt aaaacattta aaaatcgccg ataaatcatc ttttatcaag ataaaatctc
    10621 ctgttttttt tgcaagttca tttgcttttg aaaaactcat actcacagtt gcggcagata
    10681 aagccgccgc atcattgatc ccatctccta caaaaagagt ttttttaaat ttttgaatga
    10741 ttcgtagttt ttcttcactc ttaagttgag cataaaattc gtctatttgt aattctttgg
    10801 ctattttttc tacatttttt acatgatcgc cgcttaaaat aaaagtttta agattttgct
    10861 tttttaaatt taacacaagc tctttggctc catcttttaa agcattgctt aacaaaacac
    10921 cgcctaaaca ctttttattc ttagcaaaat acaccctaac atattcttta aaagtatcaa
    10981 aaaagatatc actttctttt gtgtcaattt cattttcgtg caaaaacttc gcactacctg
    11041 cgagataaat atcactatct tctttgtatt ttataccaga acccacaatc actcttccct
    11101 caccctttaa atcaaaaatt tgatctttat gcaaagcctt agctatagga tgagagctta
    11161 aactttcaat ttgacataat ttatcaaaat catctttaga aagattgtgt ttaaaaatac
    11221 tcaaattttc ctttgtcaat gtacccgttt tatcaaaaaa agcatactta actaaggcta
    11281 atttttctaa agcggcagga tttttaataa gaatgaaatt ttttgccgca tttgaacttg
    11341 ccacaaccaa agctataggt gttgcaagcc ctaaagcaca aggacaagag atcaaaagca
    11401 cagcacaagc gtgtaaaaaa gctgtattta aatctgcttt tagcgcccaa aaaacaaaaa
    11461 ctaaaaaagc aaaaaatatt atacccccta caaaatattt agaaatttga tctgctaaat
    11521 ttgccaaagg acttttgata tttcctgctt caaaaactag atttttgatt tgttctaaag
    11581 tactatccat agcctttttg tttgctttga tccttaaagt accatttaaa actactgctc
    11641 ctgcttgaac ttcgtcgcct tcttttttta aaacaggcaa aaactcccca tttaaaaaac
    11701 tcatatcaag ctctgcactc cctaaaagca ccactccatc tgcgacaatg ctttctcctt
    11761 cttttaccaa aagcacatcg ccacttttga caaaagaact tgaaatttct ttgatacttt
    11821 catcttcaag caaaattttt gtcttttttg tgtctatatt ttctaaaatt ctttgataat
    11881 cttgtgcttt aaatttagcc ttactttcaa gatattttcc taaaagcaca aaagaaataa
    11941 tcatcattgc accgctaaaa tacaaatctt cttctttaaa aatttgcaaa tacaccaaaa
    12001 aagaatacac aaaagcactc aaagtcccca aagctacaag ggtgttcata tctaaatttt
    12061 tacttttaag tcctaaaaaa gcatgagaaa aaaagtctct cccacaataa aatatcccaa
    12121 aaaaactcaa agccatttgg atattttgcg aaaaagaact tttaacaaac atttcaaaat
    12181 acataataat cacactcaaa actatactta agagcaaatt ttttcttaat tctaagtgtt
    12241 tttttacctt gtatgcgttt aagctttgtt catcttctaa aatttcaaag cctaaatttt
    12301 taatttttgc gatgatatct ttgcgttttt cttgatcttc aagtaaaaaa accccactag
    12361 aattcacata agaaacacta gcatctttaa caccatcaat ttttttacaa gctctttcta
    12421 tagcattaga acaattaacg caagtcattt tgcctatttt tatacgcaat tcttccatta
    12481 taaacgctct atgatctcaa aacctaaatc ttgaaattct tttgtaaaat ttgatacttg
    12541 attttcttct aaatttaaac ttaaaatttt ttgctccaaa tccacttcta tatttccaaa
    12601 ttcatcttca agagaatttt tgatcaaatt tacacaattc atgcaattaa cattttttac
    12661 tttaaatttc attttcgctc cttataggtt gtatagtaat gtgcccgatt tcaaattcat
    12721 gtagtaattt atgggataaa tcctgagata gtttttcaaa ttcctttaga tcgcaaactc
    12781 ttacttttaa atgcatggaa gctactaaca ttttattggt aatttgagta atatgcaaat
    12841 ccaccacctc atccacacta ggatttaaaa gcaaaacttg tcttactttt tctatatcca
    12901 caggagaact ttcaagcaag acattagcac tttgtttaag caagataatc gcccatctta
    12961 aaagcaagat tgataataca atagctaaaa tcgtatctat ataaacaata ccactaaaat
    13021 acaccacaat cccacctata ataaccgcta aagagcccaa taaatcactc atcatatgca
    13081 aaaaagcgga cttcatattg acattttcta aatttgcacc cttaaacatc atcaaagcat
    13141 taatcccatt taccaaaaag cccaaaatag ctacaattat catggtttta gcatcaattt
    13201 cttttggatt aataaatttt tctatagcct cataaatgat aaataaagcc gataaaataa
    13261 tggttaaagc attgataaaa gccactaaaa cttcaagacg aaaataccca aaggtctttt
    13321 gatgatcttg ccatttttct acagctataa tggctaaaaa actaagagct aaggcaaaaa
    13381 catcagaaaa catatgcaaa gtatcgctta aaagtgctaa agaatttgaa aggattgaat
    13441 aaataaattg cacaagcatc atagaaaaag tcattaaaag agaaattttt aaaatctttt
    13501 tatccacact ccttgcatca gcatgggaat gatgatgttc atgagaatgt tcttcgtgat
    13561 tatgatgaca agatttgtta gctaaaggct cgtgtgataa aaatttatac atcttatatc
    13621 ctttttgctt gacattttaa gatattaagc taaaaaggat ataaatattt gttattttta
    13681 taaaattaaa agtcaaaaag ctcgcctagc caactttctt tctttttctt tttatagtag
    13741 tcattgtgct gatgataagc tgagtcatta tatcttgact cttgtcttga agcttggtta
    13801 aaatttgctg tattagggac actgcgttct atgattttgt caagttctcc acgatcaagc
    13861 caaacgccac gacactttgg acaataatca atctcaactc cactcctatc actcataacc
    13921 aaatctacat tacaaactgg acataacata caataccttt ttttaaaatt tttaatttaa
    13981 aattataaaa agaaatatta aacaaatttg caacaagttt taatgttttt ttgcatgtct
    14041 agtcatcata aaactttgtt caaaaaatat aagcaaagta acactcactc ctatagctag
    14101 agccaaagtc acagaaacag ttgtaaaaaa ataatcaaaa aattgaacca aaaattcaga
    14161 cttagccttc aaatcatcac tgcgtataaa agaaataaga tacaaaatcg ctttataagc
    14221 gtaaattcca ggtatcatag gaataagagc aggaaaagcg ataatttcag caggggtttt
    14281 aatgattttt gctaaagcaa ttcctaaaca tcctatgcaa aatgaagcaa caaaagttgc
    14341 aattgctaaa gtttgaaaat gaaaatattc caccaaagta aaacgaagcc catgtgcaat
    14401 tgctgctaaa agagcagata aaataagggt ttttaaaggt gggttgcaag cataagcaaa
    14461 accaaatccc gccacagcag caaaaaacat atctcttaaa ataaattcaa tcatcttaaa
    14521 atcccaaaat ccgaaatact aagcgtcatg taaattccaa gcgctataca acaaatcaaa
    14581 atccctacac tgataatacg actaagtccc attaaaatat gatcttttaa tatatcaatc
    14641 acagaattta taaaaaatac ccctggtata agatacaaga tactagaacc caaagccaca
    14701 tcagaagtat tggtatatcc catatccagc ccaaaaaata caaaccacga tgagataaaa
    14761 gaacaaagaa tatattgaat tcttaaatca atctttgctt tagttaaaat atatcttaat
    14821 aacaatccca caaatgttgc aaaaaatact aaatttccag caccaaaatc accaccaaaa
    14881 agtctacaaa aagccgaatt tgccatagaa acaaataaaa gattaagcaa ataagaatgc
    14941 tttttttgtt gagaaatttg ctcaaaaacg actttcgctt tttcaagatc gtatttgtga
    15001 tcatatatag cccagcttaa agcacttaaa tcaaaaataa gcttaaaatt aacatgggca
    15061 tgatgattgg gtataacata agttctttga atggagttat catccatatc tacaacattt
    15121 aaagtgatat gatgaaaaaa gaaattgata tttatctcat agccataaac ctcagctatt
    15181 cttcctacgc attttgccac cctagctgta taagttccag cacctagcaa agttttagta
    15241 tatacgatta aaaaattagt taatctttgt atatcaggtt tttccatatt ttaataatct
    15301 ttgattgaat ttgttataat tatagcaaat tttaaaataa ataaggagaa aaaatggcaa
    15361 aaatcggtat agttggttta ggttatgtag gagcttctag tgcttatagc atagttactc
    15421 aaggaatttg ttcagaactt tacttatatg atataaaaca agatttagct ctagctcatg
    15481 caagagattt ggaagatatg tcagccattc atttttctta tacaaaaatt tttcatgtgc
    15541 caaatttaga aaatttagct tcttgcgata ttatcatttt agcttttaga aaagaaagtt
    15601 taaaagaact acctagtcgc ttagtagaac ttcaaaacaa tatcctcgaa cttaaagaca
    15661 ttgtcttaac cttaaaaaat gctaatttta aaggtaaata catcgtcgca acaaatccaa
    15721 atgacaccat aacttactac actcaagtat taagccaatt acctaaaaat catgtttttg
    15781 gcagtggaac aaatttagat agttcaagac ttaagaaatt tttagccaaa gatttaaaca
    15841 taaattcaaa agatattttt gcttgtatga ttggcgaaca tggagattct cagtttgcag
    15901 cactttctaa tgcaagcgtt ttaggacaaa atttattaga tttttataag caaaaattag
    15961 gcaaagattt agacatacaa aaacttgaaa aagctgtgat tagcgaaggg tatttcatct
    16021 atgaacgcaa aggaaggaca gaatttggca taggaacttc ttgtgcaaat ttagccaaag
    16081 ccatcctaga agatagaaaa agtttacatc ctgtaagtgt ggtttttgat gatatggctt
    16141 tttcaatgcc cgctatcata ggaaaagatg gtatagaaaa agtttttgaa ttaaaattca
    16201 atgaaaaaga aaaaataaaa ttagaaaatt caaaacaaca aatcaaaaac gctatacaaa
    16261 gcgtaaaaga taaaatttaa gcctttttaa aaggcttttt gattttgata taaattaaac
    16321 ttgctaaaat cacaaaaaca attataatga ttaaaatttg agttaaataa gttttaatca
    16381 actcttcatt ttgtcctata taataaccca aaaatacaag tatagccacc caaatagcac
    16441 taccaagtgc agtaaaaagt ataaaattta caagtttcat ttttaccaaa cctgcaggca
    16501 tagaaatata ctgacgaatc cctggcaaaa gacgacaagt aaaggttgaa aattccccgt
    16561 gtttgttaaa aaattcttca aatttagcaa atttgacttc atttatacca aaatacttac
    16621 cccattttaa tacaaaattt ttaccccaaa aaaagcaaat ataataatta atcaaagccc
    16681 ctaaaacaga acctaaagtc ccactaagta tacaaagagt gatatcaagt ttgcctttat
    16741 gtgccaaata tccagcaggt atcataacaa cttcacttgg aaaaggtata aaacaactct
    16801 ctaaggtcat taagataata atacccaaat acccccaagc actagccgtc tcaacaataa
    16861 aagaaatgat ttcttgcata ttagccttat ttgaagaaaa ttttaaaaaa ttgtagctta
    16921 aaagattaaa cagtaaaaag cggttttaca ccgctttttt tatttacctg caactgaaac
    16981 ttgatttgga ttgtctgctg cacgagcgat catgcactct tttaaaacag cagcatcagc
    17041 tggatcgcta acttttttat taatccagcg ttcaacttgt ttcattgttt ttgactctgg
    17101 ctctggagct tcgtattttg ccattaaact tgcacaatca gccaaagcaa tgataggtaa
    17161 taaacttgca aaaagtattt ttctcatctt ttgctcctta gaattttaca ttatacatta
    17221 acatgatatt atcagctctt gctttatctt ttttcgctcc accaaatggt aagccacgat
    17281 taccccaaat attttggata ttagtataac ttaagcgtaa gaattgatat ctatcaagtt
    17341 gataaatcac ataaaaatca tgtgccgttc ctcttgtcat tcttatatta agtggatcat
    17401 tgatacttgg acggctcata gtataccaat atctacttcc ccagaagaac tcatacccta
    17461 cttttaaagc cttggtaaaa tcatagcgtc cgcctacatg cacagcatag ccatcttttt
    17521 cattaatttc caattgagat tgtacagtag gatttgcact tagagtatgt gcatttgctc
    17581 cgttagaata ccctaaagat acaaaataat taaaatttgt accaaaagct ttgtaatttt
    17641 caaaatgaat attagctaaa gtaagattac ctaaattaat aactccatca tcatcaccta
    17701 gtaatgtcgt cgatcctgga ataggcaatg caaaatcagt catatgagct acattgaaga
    17761 taataagatt atctcccata ccttctatag gaagctctcc ttctactgca gcatagtaaa
    17821 gatttgcatc agcatctttt tgatcgctca tccagtctct tactttacca ctttcttcat
    17881 cccattgata agttttacca taagctgcac ggatagctac cttatgatct tgcaaacttt
    17941 caggtttata agtgatcact gctgcatcac ctagagcgtt gattgccaag gctggataag
    18001 ttgattgtct taaagcattg tttctaagat tacttcctgg accatcggtt cctggctgtc
    18061 ttcctatggt tgcaatccac tcaggtgtga tatagtagtc aagataagct ctatctacat
    18121 aaagtacagg cccacttgat cttgtatttc ttcctgcatc taaatcaagt ggacttccac
    18181 tccaacccat ttgagaccag tttttagcca tagacaaacg accatagaat ttggttttat
    18241 cattaatatc agcattcata tttaaatgaa gctcattcat ccatttgtta ttagcactat
    18301 aatcttgtcc gccaacttta tagtttgtat ttgaaaccgc tgttgaaaac tcaagtccaa
    18361 atttaacctt gcttaaagca gcttgaaatt ctgtttcatc ggctctatca ttaagatcag
    18421 caagttcagc ttttacagct tcattttgct tagcttgagc ttctctttct tttctgattt
    18481 ctgcaagttc agcttgaatt tgcgcaagct gtttttgaag cttggttatc tcatcatctg
    18541 tatttttagc aaaaagtgaa gatgaaagaa gacaggcact taaaataagt gaaaacttag
    18601 ttttcataat cataactcct tgtaattttg ttacatttag taaattaaaa ttgtgattat
    18661 agaaaaaaaa gtttaaaaaa aaattataca ttaatcattt ttagctagtc aaacttatga
    18721 ctagctttgt aaatattgta gtttcaaaaa agttttaaaa ttttaaattt ttaaatttta
    18781 tcgcaaattt ttatgtctaa aattttatct ccttggcgta tagagtctaa aacttctaaa
    18841 ctttcttcat cttttggatc aatttgccca aaaacagtat gaactccatc taaatgagct
    18901 tgagggctgt gacaaataaa aaattgagaa ccacccgtat cgcgtcctgc gtgtgccata
    18961 gataaggttc cacgctcatg tttatgttct tgatcatcac attcgcaaat gatttcatat
    19021 ccaggcccac ctatgccatt gccgtgcgga caacctcctt gtatgacaaa atttgggatc
    19081 acgcgatgaa aatttaaatc tttataaaat ccttcattag ccaaagtagc aaaattacaa
    19141 accgtttgtg gagcctcatc accaaaaagt tttagtttca ttgtgccttt ttcagtttct
    19201 atgagagcaa atttgtattc atttactttg cttgtgtcga ttgtttttat cattatttct
    19261 ccttaatcta tatttgtata aacagcttga acatcatcat catcttctaa cttatctaaa
    19321 agtttttcta tatcgctaag ctgttcttcg ctaaagctta caggattgtt tggtatatac
    19381 tcaagccctg cttttttaag aactaaaccc ttagcttcta tagcagaact tagctcacca
    19441 aaggcagtat aatcaccgct aattactaac tcttcttcat tttgttctaa ttcttcaagt
    19501 cctgcatcaa tcaaatcaag ttctaattct tctaaatctc ctgcaaattt ttcaagatga
    19561 aaaaccgctt ttctagcaaa cataaagcct aaagatccat tttgtaaaac ttctcctcca
    19621 tttttactaa aaatagcttt tacattagcc acggtgcgtg tagggttatc gctcatacat
    19681 tcaactataa ccaaagctcc atgtgcagct tttccttcat aatgaatgtt tttaatatct
    19741 gcgctatctt ttccactcgc acgcttaata gccgcatcta tattatcttt tggcatatta
    19801 tttgcttttg ctgtggctat agcacttctt aattttggat tcatatcagg atcagtgcca
    19861 ccttctttag cagctacttg tatggcttta gcaagcttag gaaaaagctt actcatttta
    19921 tcccatctag cctctttaga agctcttcgg tattcaaacg ctcgtcccat aaattctcac
    19981 tttctttaaa gatttttaaa cttaaaagta taaactaaaa aggctaatta aagctttaaa
    20041 tggtatgatt ttaccattta tttttgggga gaagcttttt gaatatcgca aaaaaagaac
    20101 tttttgttgc ttggtttttc ttgattgctg ctattatatt tgaagtttta ggtactagtt
    20161 ttttaaaaat ggaaaatcaa attttaggct atatatttat ggctttattt atagcttttt
    20221 cttatttttt tatgggcaag gcgattaaaa aaattcaagt aggcatagcc tatgctgtat
    20281 gggaactttt agggattatt cttatacttt tagtttcttt tatagttttt aaagagagtt
    20341 taaccttaac tcaaattcta ggcattgttc tttctatcgt tggaattatc atgattaaca
    20401 taggcgaggt taaagaataa tgtatatttt tatcattgtt ctatcggcat tgttagatat
    20461 cgtagcaaat ttattactaa aaaaatcaga tggttttaag cataaaattt ggggcttggc
    20521 tgcgattgtc aatgctatac ttgctttttt cctactttct ttttctttaa aatatgttcc
    20581 tttaagcata gcttactcaa cttggggtgc tataggcatc ataggaactt gtcttggtgg
    20641 atggatttta tataaagaaa aattaaacaa aataggaatt ttaggtatca ttatcgtaat
    20701 aatagcagta tttttgctaa attattaaaa cagcaaaatg ctgttttaat gttccatttt
    20761 gtttttcgct tcaataccca ttaaagaaaa tgcggtttta atactaagag caactaaaga
    20821 aaataattta agcaaatcat tttcatttat agaacctaca actttatttt cattgtagaa
    20881 tttatgaaaa tttgcagcca aatttttaag ataatcagga attttttgca aagctctagc
    20941 ctcaaaagca tcgtttaaaa tagcttttaa attcaaagct tcaaaaagta aattaacacc
    21001 atcttgattt aaactttgta aatcagctct cattacatca tcgatttttt taccagcttt
    21061 agcaaacact tgatgaattc tagcgtgtgc gtagttgata taatacacag gattagaact
    21121 atcttctttt tgcaaatcac taatatcaaa ttccaaatga gtatcgcact ttttactcaa
    21181 aaagatataa cgcaaagcat cacttcctat ttcatcaatc acatcgctca tcaagataaa
    21241 atttcctgct cttttactca ttttataagg ctctccatct ttaagcaagg aaaccatttg
    21301 tgctaaaata atctcaagat tattagagtc aaatcccaaa aactccatcg cagctttcat
    21361 tctagggata taaccatgat gatctgctcc ccagatatta atacactttc cataaccacg
    21421 actcatttta tccttatgat aaacaatatc tgctgccaaa taagtcccgc gtccatcttc
    21481 acggataatt accctatctt tttcatcgcc cttttgcgaa gaagcaagcc aaattttacc
    21541 ttcttgctcg taaattcctt tatgctcttt caaagattct aaagttgcat ttaaagcgtc
    21601 ataatacgat ctctcgctta catagctgtc aattttaatc tttgcttgtt ctaaattttg
    21661 tttaatcaaa ataagcattt tatcttttgc ccaatcagct aaactaggga tattttcttc
    21721 actaaaaaat tctttaccaa atttttcaaa agcttctttt gccaaatctg ctatatactc
    21781 gcctttgtaa tattgctctg gatattcaac attttcatga agtatatttt ctttcacact
    21841 tagtaaaata gaaagcccta gtaaataaat ttgattaccc gcatcattga catagtattc
    21901 tgtatcaaat ttataaccca aatgtcttgc aagtcttgtt aaggtgtctc caaaaacagc
    21961 gcctcttgca tgtcctatat gtaaaggtcc agtaggattt gcactcacat attcaagcaa
    22021 aaaactttct tgtttttttt ctcctttaga aaaatcattt ggatttgcta aagcctgatt
    22081 tgcaagttca tttaaaaaag ttttggaaat tctaaaattt aaatacccat ttacagcttc
    22141 aaccgattca aaacaatcat gattttgaaa tttgctcgct aagtcgctag cgatcaacat
    22201 aggagatttt tttaattcct tagccagtga aaaagccaaa ggggtagcaa aatgtgctaa
    22261 atttttatcc tttggatttt caagtgtaaa atcacactct aaaatctttt taatttcatt
    22321 aaaaataata cttttcaaaa gactaaacct taagcttttt ttgttttgtc tatacttgca
    22381 tcagcacttg tattattagt tgtgtttttg ttttcttcta ttttttgagt attttttgct
    22441 acttcatcat cattattcat ttcatcttta aaagttttaa tacctttgcc taaacccttt
    22501 gcaagttctg gaattttttt tgctccaaaa agcaatacaa caatcaataa aataatcaac
    22561 caatgacttg gacttgacca accacccatt ttattctcct tcattccaaa tattttgaat
    22621 ttgtcctaga ttctgccctt tggttctaaa tttatgggca attaaaatcg ctcgcaatgc
    22681 ttcataactt tgctttagct catcattaat gataagataa tcatagtcgc taagttcttt
    22741 catttcatca ctagcgtttt gtaatctttt ttctagttgt attattgtat cagtatttcg
    22801 cttaataagt ctttttttta gctcatcttt attttttgta gtaataaaaa cagaaacaat
    22861 cttatcagcc attttttgtc tggctatttt aaatccttgc acatcaatat caaaaacaac
    22921 tatttttcca ttatctaaag catcttgagt gtgctttaaa gaagtgccat aaaaattttc
    22981 atgcacctta gcccattcta aaaaatgatc accatctata cctttttgaa attcttcatg
    23041 ggatatgaaa tgataatgta ttccattttt ttcaccctct cttggtttgc gagttgttga
    23101 agaaatagaa aaataaagct catcttcaaa ttcatcaaaa agttttttta aaagagttga
    23161 ttttccagct ccactaggac ctgaaatcaa caaaataaaa ccttgcaatt ttaatcctct
    23221 ttaaaactaa tgtttatatt tatattcata ttcataccct taagagcagc ttttaaggta
    23281 tcatccttaa tacttgaagt gatcgctcct gctatgcttt ggctaagctc attaactatc
    23341 tcttcactat tatcatcttt agttgcattg cttactatag gctcttcatt tttttctaca
    23401 atttcctctc caagagcttc ttgtatatca ctttctttca atgcatcaaa atcacttata
    23461 tttaaatttg gcacaaccac ttcctcttca tttgttccta attctgtatc gtctaaaatt
    23521 ggctcatctt taaaatcttc taaaaccttg ctactattat cactatcaat accataatca
    23581 agctcatcaa gttgagctag ttcttctttg atttgatctt gagtgctcaa atttgaaata
    23641 aaatcatcca tttcatcttg aacatcttct tccacaacag gagaaaactc ctctaaattt
    23701 tcctctgatt cttcattatc ttttgcttga cctaaaaatt cagcatcctc aggaatatca
    23761 tcaaaatcca tttctttttc ttgctcttca accacaggaa gatcatcaaa gtcgcttata
    23821 ttagcttgta attctttgtt atcttctaaa tcttcatcat ttttatcatc tagttcgtct
    23881 aaactaggct cagtatccaa agctgtatgt tcttggctta agtcttcttt ttggcttccg
    23941 ccatcttcca aagttaaatc taaatcagtt tgaatgtctt cttgagtctg ttctttagtt
    24001 gtttcttgtt ctaaattttc atcttctaaa ttttgagttt ctaaagcttt gtttgcatta
    24061 tcatcttgag attcgttaag ctcttcttgc atttctaatg tatttgcttt agaatcgttt
    24121 aataattctt gcttttctat ttcttca
//
LOCUS       DAEDTT010000013        21123 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.013, whole genome shotgun sequence.
ACCESSION   DAEDTT010000013 DAEDTT010000000
VERSION     DAEDTT010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21123)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21123)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21123
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.013"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..481)
                     /locus_tag="KLC54_000395"
     CDS             complement(<1..481)
                     /locus_tag="KLC54_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HBD9176805.1"
                     /translation="MYRYLLFVLAAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLTLANNLDKQAELNNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYY
                     "
     gene            complement(454..828)
                     /locus_tag="KLC54_000396"
     CDS             complement(454..828)
                     /locus_tag="KLC54_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HBD9176806.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVEFEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLF"
     gene            complement(818..1519)
                     /locus_tag="KLC54_000397"
     CDS             complement(818..1519)
                     /locus_tag="KLC54_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HBD9176807.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILADFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIKLIEKNLKSNQIQGDIFHDDFNQFQSIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLTKANSMLKPNGTLYFCYEALALDE
                     ICFILKDIKIKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            complement(1525..1674)
                     /locus_tag="KLC54_000398"
     CDS             complement(1525..1674)
                     /locus_tag="KLC54_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176808.1"
                     /translation="MIKIAFFITFVISFLTAQSPVNFKEDNNITKEQNIFKEQPPKRI
                     KIPTH"
     gene            complement(1692..1768)
                     /locus_tag="KLC54_000399"
     tRNA            complement(1692..1768)
                     /locus_tag="KLC54_000399"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1732..1734),aa:Arg,seq:cct)
     gene            complement(1797..3872)
                     /gene="fusA"
                     /locus_tag="KLC54_000400"
     CDS             complement(1797..3872)
                     /gene="fusA"
                     /locus_tag="KLC54_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HBD9176809.1"
                     /translation="MSRSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGAEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            complement(3885..4355)
                     /gene="rpsG"
                     /locus_tag="KLC54_000401"
     CDS             complement(3885..4355)
                     /gene="rpsG"
                     /locus_tag="KLC54_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HBD9176810.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            complement(4425..4811)
                     /locus_tag="KLC54_000402"
     CDS             complement(4425..4811)
                     /locus_tag="KLC54_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HBD9176811.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGTAK"
     gene            complement(4931..9484)
                     /gene="rpoC"
                     /locus_tag="KLC54_000403"
     CDS             complement(4931..9484)
                     /gene="rpoC"
                     /locus_tag="KLC54_000403"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HBD9176812.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMAAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANADSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIIKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKNI
                     VANRRNAAILLVEPKIKTPFKGVINIENIHEDVIVSIKNKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYQLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(9477..13613)
                     /gene="rpoB"
                     /locus_tag="KLC54_000404"
     CDS             complement(9477..13613)
                     /gene="rpoB"
                     /locus_tag="KLC54_000404"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HBD9176813.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLIGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLASEKEFIKSLSDEELLNYA
                     RDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(13722..14099)
                     /gene="rplL"
                     /locus_tag="KLC54_000405"
     CDS             complement(13722..14099)
                     /gene="rplL"
                     /locus_tag="KLC54_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HBD9176814.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMVAGGA
                     AAGGAAAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(14120..14599)
                     /locus_tag="KLC54_000406"
     CDS             complement(14120..14599)
                     /locus_tag="KLC54_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HBD9176815.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLSVSKVAAKFEENNDKFE
                     IKTAYIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(14751..15452)
                     /locus_tag="KLC54_000407"
     CDS             complement(14751..15452)
                     /locus_tag="KLC54_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HBD9176816.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(15507..15932)
                     /gene="rplK"
                     /locus_tag="KLC54_000408"
     CDS             complement(15507..15932)
                     /gene="rplK"
                     /locus_tag="KLC54_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HBD9176817.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(15958..16491)
                     /gene="nusG"
                     /locus_tag="KLC54_000409"
     CDS             complement(15958..16491)
                     /gene="nusG"
                     /locus_tag="KLC54_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HBD9176818.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(16501..16680)
                     /gene="secE"
                     /locus_tag="KLC54_000410"
     CDS             complement(16501..16680)
                     /gene="secE"
                     /locus_tag="KLC54_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HBD9176819.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVAVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(16699..16774)
                     /locus_tag="KLC54_000411"
     tRNA            complement(16699..16774)
                     /locus_tag="KLC54_000411"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(16739..16741),aa:Trp,seq:cca)
     gene            complement(16787..16945)
                     /gene="rpmG"
                     /locus_tag="KLC54_000412"
     CDS             complement(16787..16945)
                     /gene="rpmG"
                     /locus_tag="KLC54_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HBD9176820.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(16998..18197)
                     /gene="tuf"
                     /locus_tag="KLC54_000413"
     CDS             complement(16998..18197)
                     /gene="tuf"
                     /locus_tag="KLC54_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HBD9176821.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(18266..18340)
                     /locus_tag="KLC54_000414"
     tRNA            complement(18266..18340)
                     /locus_tag="KLC54_000414"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18306..18308),aa:Thr,seq:ggt)
     gene            complement(18445..18521)
                     /locus_tag="KLC54_000415"
     tRNA            complement(18445..18521)
                     /locus_tag="KLC54_000415"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18485..18487),aa:Gly,seq:tcc)
     gene            complement(18528..18613)
                     /locus_tag="KLC54_000416"
     tRNA            complement(18528..18613)
                     /locus_tag="KLC54_000416"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18577..18579),aa:Tyr,seq:gta)
     gene            complement(18663..18738)
                     /locus_tag="KLC54_000417"
     tRNA            complement(18663..18738)
                     /locus_tag="KLC54_000417"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18703..18705),aa:Thr,seq:tgt)
     gene            complement(18853..19590)
                     /locus_tag="KLC54_000418"
     CDS             complement(18853..19590)
                     /locus_tag="KLC54_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HBD9176822.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKAKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDEVLKEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDEGKIIE
                     ENDPKSFFENPKSERAKKFLNLFDYHK"
     gene            complement(19592..20248)
                     /locus_tag="KLC54_000419"
     CDS             complement(19592..20248)
                     /locus_tag="KLC54_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HBD9176823.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISIIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFVYIIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(20241..20942)
                     /locus_tag="KLC54_000420"
     CDS             complement(20241..20942)
                     /locus_tag="KLC54_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HBD9176824.1"
                     /translation="MDFDFILVQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLDLICLSVEETLRP
                     SFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLCYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLHA"
     gene            complement(20959..>21123)
                     /gene="nssR"
                     /locus_tag="KLC54_000421"
     CDS             complement(20959..>21123)
                     /gene="nssR"
                     /locus_tag="KLC54_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HBD9176825.1"
                     /translation="NLDTISQKQIAIDLNVRAQSLSRVLKELKISELIDTKKGRIEIL
                     NKDMIMKELW"
BASE COUNT         6573 a         4291 c         2841 g         7418 t
ORIGIN      
        1 tatagtattt tgtagcattt tttaaatcat tttttttaac caaaatatcc ccgtaaagct
       61 ctaaatttct aggatcacta tccttttttg ttaaaagctc tttcataagt ttttgagcat
      121 tgttgatatc atttgaattt aaagcataaa gagcactaag tcgcttaaga ttgtcatttt
      181 gatttaaata aggctttgct agattattta actctgcttg cttgtcaaga ttgtttgcta
      241 aagtaagtaa aaatgcattt tctaaaaaat tagtattatt ataatcttga taaagactta
      301 aaaattcatc tctggcttct ttgtattgtt tataatactc ataattataa gccttcataa
      361 cccttaaatc aaaatcattg cttttatatt ttgtataatc aggataaaca acattgattt
      421 ttgaacttcc acaagctgcc aaaaaaaagg ctgctaaaac aaataacaaa tacctataca
      481 ttctttttct aattcctttt gatgtgtttt aaaatattcc caaaatggaa aagttctgca
      541 ttgttttgga cgaaaatcgt agatactgca atttcttttt tgagtatcaa aaaaaatgca
      601 agcaaagcca tcttcaaatt cgacttcctt aaaactcatt ttaaagccca cttttctcaa
      661 gtatttttca gcaaattctt tgctttctaa atttaaatgc tttcttaatg cttctaattc
      721 ttctttgctt gcaaaaatat tgccactttc tccagtgcaa cactttccac cgcatttctc
      781 acaagcattt tcatcaaaag cataagaaaa atttttatca aatatcataa ctttttaacc
      841 taaatcttaa gtgaatttct tgcatttgtt tgcttaaaat ttcattttca tatacaaaaa
      901 aaggaggtaa aatctcacaa ggcgattttg aacctttttt tacctgtatc aaaacaagtc
      961 ttgctttttt gttttgatgt gtatgtacaa agcaaagctt tgttattttt atttttatat
     1021 cttttaaaat aaaacaaatt tcatctaaag ctaaagcttc atagcaaaaa tacaaagtac
     1081 catttggctt aagcatagaa tttgctttag ttaaaaagct atgcaagggt aaaaattcct
     1141 gaaatttact tatagcttta tgctgatctt cactcttgta agctccttgt ctataaaatg
     1201 gaggattgca aactatgaag tcaaattttt ttatgctttg aaattgattg aaatcatcat
     1261 gaaaaatatc gccttgtatt tggttggatt ttaaattttt ttcaatcaat tttatatttt
     1321 ctttttgaat atcaatcaaa gataaactta aatttgcaat atttttttta agtaaaatac
     1381 ctatgatacc acagcccgca cctacatcaa aaacagcgcc tttaattcct tgttttaaaa
     1441 taaaatcagc taaaattaaa gaatcactat tataacgata cccttgtgat aattgtgcta
     1501 gcgtaatcaa atctgacata tattttaatg cgttggaatt ttaatgcgtt ttggaggttg
     1561 ttctttaaat atattttgtt cttttgttat attattatct tctttaaaat ttactgggct
     1621 ttgtgctgtc aaaaaagaaa ttacaaaagt tataaaaaaa gcaattttta tcataataac
     1681 acctcataaa atggtgtcca cggcgagatt cgaactcacg gcctcaaaat taggaatttt
     1741 gcgctctatc ctgctgagct acgaggacag aaagcgggaa aaatcccgct aaaaatttaa
     1801 ccgtttcttt ttttgatgat ttcatccgca acatttttag gaacttcatc atagtgatca
     1861 aattccatag aataagtcgc acgaccttga gtttgacttc taagatcagt agaataacca
     1921 aacatttcag ccaaaggaca aaatgctgtg atgattttat ttccaccacg ctcatccatg
     1981 ctatttactt gaccacggcg tttgttaaga tctccaataa catcacccat ataatcttca
     2041 ggagtttcta cttcaacttt catcataggc tctaagatca cagcacctgc ttttctagca
     2101 ccttctttaa agcccataga agcagcaagt ttaaatgcca tctcagatga atccacctcg
     2161 tgataacttc catcataaac agttacttta acatcttcca caggataacc tgctaaaaca
     2221 ccattttgta atgcttcttg aacaccttta tcaactgcag gaatgtattc ttttggaatt
     2281 accccacctt tgatatcatt aacaaattca tatccactac ctggctcaag tggttcaagg
     2341 cgtaagaata catgtccata ctgaccacga ccacctgatt gtttagcgta tttgtattct
     2401 tgttcaacag tttttctaat agtttcgcga taagcaactt gtggttgacc tacttcagct
     2461 tcaactttaa attcacgaag cattctatca acgataattt caaggtgtaa ctcacccata
     2521 cctgaaatga tagtttgacc actttcttca tctgtagaaa ctctaaaact tggatcttct
     2581 tgtgctaatt tatttaaagc aatagacatt ttttcttgat cagctttagt ttttggctca
     2641 actgcaacag aaataactgg atctggaaaa tccattcttt caaggattac cttatctttt
     2701 tcacttgcaa gagtatcccc tgttaaagta tctttaagtc ctacaacagc accaatttcg
     2761 cctgcgtaaa gcactttaat ctcttctctt ttgttagagt gcatttttaa caaacgacca
     2821 attctttctt ttttatcttt agttgagtta tatgcataag aaccgctttc taaacaaccg
     2881 cgataaacac gcacgaaagt aagttgtcct acaaatggat ctgtcatgat tttaaatgca
     2941 agccctgcaa actcgccatc atcagttgat tttacagaaa cttctgcgcc atcttcatat
     3001 tcacccttga tatttgccac ttcatcagga gctggcaaat aagccacaac agcatcaagt
     3061 aaaggttgaa cccctttatt tttaaacgct gtaccgcaaa gcataggaac gatagaaaga
     3121 cttaaacatc ctgctttaat ccctgtttta atctcttcaa ggcttaattc ttctccgcct
     3181 aaatattttt ccatcaactc atctgaagtt tcagaaactg cttctatcat ttttgtgcga
     3241 tattcttctg ccttttcttt aagttcagct ggaatttctt tttctacata atccgttggc
     3301 ttagtatcat cttcccaaac taaagctttc atagttacaa gatcgattac gcctttaaaa
     3361 ttatcctcag caccaattgg aatttgaagt ggaactggat tagcttttaa acggttgcga
     3421 atttgatctt ctacattata aaaatttgca ccgattctat ccattttatt tacaaatact
     3481 attcttggaa caccgtattt atttgcttgt ctccaaactg tttcactttg aggctgcacc
     3541 ccacccactg aacaaaatac cgcaacagca ccatcaagaa cacgcataga tctttcaact
     3601 tcaattgtaa aatccacgtg gcctggagtg tcaataagat tgatttgatg atctttccaa
     3661 aaacaagttg tagccgcaga agtgatagta atcccacgct ctttctcttg ttccatccag
     3721 tccatagttg cagcaccatc atgaacttca ccgattttat gactcatacc tgtaaagaaa
     3781 agaattcttt cagatgtagt cgttttaccc gcatcaatgt gagcagcaat accgatattt
     3841 ctaacttttt ttaaaggagt acttcttgac atacacactc cttcttacca acgatagtga
     3901 gcaaatgctt tatttgcttc agccatttta taagtatctt ctttcttctt aaatgaagca
     3961 cctttgctat ttgctgcatc taaaagctca gctgcaagtt tatcaatcat agttctttcg
     4021 cttctttttc ttgcaaaaga aataatccaa cgaatcgcca aagcttgttg tctagcagga
     4081 cgaacttcaa ctggaacttg ataagttgca ccacctacac gacgagattt tacttctaat
     4141 aaaggcttaa tattttcaat cgcatcatta aaaatatcaa tacctttttt ctcgccacct
     4201 tttttatcaa tagcttccaa agcaccatac ataattgttg tagctgtgct ttttttacca
     4261 tcatacatta aagaattaat aaattttgtg attactttat taccataaat cggatcaggc
     4321 aagacttctc ttaccggagc ttttcttctt ctcattattt ttccttcaaa ttttaaattt
     4381 tactcaaaca aaatcaaatc taacggattt gtctgtatga atgattattt tgcagtgcct
     4441 gctttagggc gtttagcacc atatttagaa cgagaaactg ttctttttgc aacacctgct
     4501 gtatcaagag caccacgaac gatgtgatat ttaacccctg gtaagtcttt taccctacca
     4561 ccacgcacta aaacaatgct gtgttcttgc aagttatgac cttcaccgcc gatatagctg
     4621 atcacttcaa agccactagt aagtcttact ttggcaactt ttcttaacgc tgagtttggt
     4681 tttttaggtg ttgtagtata aaccctagtg caaactcccc ttctttgtgg acaattttta
     4741 agcgctggag atttagattt ttctaaaact tttttgcgct cttttctaac caattgattt
     4801 atggtaggca caataattcc tttctttaaa aatgtaataa actttggatg atatctaaat
     4861 tttgcttata ttttagttaa aaagattgaa aatgaagaaa tatagcccag aagggctata
     4921 aaatagagtt ttattcttgt tctttaagtt ttaaattttg ttcaccataa agccctgttc
     4981 caacaggtat cattctacct agaataacat tttcttttaa atcttctaag tagtcaaatt
     5041 tacccgctat acttgcttcg gttagaactt tagtagtttc ttggaatgaa gctgcagaaa
     5101 tcacactatc gcttccaatc gctgctcttg ttacacccaa aagcacaggc tcagcaatag
     5161 caggttctcc acccattcta atgattcttt cgttttcttc acggaattta cgtcttgaaa
     5221 ccaaatcacc ctcgataaat ttcgtatgtc cactatctac aacttttact tgtcttagca
     5281 tttgagaaac gataacttct atatgtttat cagaaatcac aacaccttgt ccgcgataaa
     5341 cttgttgaat ttcagaaatc aaataataat gcaaggcttt ttcacccaaa attttaagca
     5401 catcatgact tgaaacaact ccatctgtaa gtttttcacc tgcatggata aactcgccat
     5461 ctcttacttg aatatgtttt gatttatcga ttaaatactc agcgcttgtt ccatcttctg
     5521 cttggataat gattctttct ttagaacgca aaggtttatc aaaacgaaca acaccatcaa
     5581 tttctgcaat cacagccgca ttttttggtt ttcttgcttc aaaaagttca gaaactcttg
     5641 gaagacctcc tgtaatatct tttgatttag ctgcagcttt tggagttttt gctaaaatat
     5701 ctgcttgagc gattttatca ccatcatgaa caaaaataac ggtttttggt tcaagctgat
     5761 aacgcacagc cttatcacct tttcctgcga ttaccaaagt tggtctaact ccgcttggca
     5821 aatactcatt aatcactaaa gaacgcttac ctgtagcttc atcaatttgc tcatcagcac
     5881 tataacctgc ttcaatatcc tcaaagctta caacaccatc aatttctgca atgatagtat
     5941 tattataagc atcccattct gcaatcactt ttctttcttt tttaggagca cttgcaatga
     6001 tagtatttgc atcatcgatt ttttcactat cgttaaattc tatcttagat tctcttggaa
     6061 tatagtgtct ttttgcttct ctatcatttt catcagcaat cactacaaag aatccttttt
     6121 ctttaacaat atcgcctttt ttaacatttt ttaccctatc taaaccatcg cctttaagga
     6181 tataaaattt aagcgttcct ttttcgcctg ctttgatatt ttgaactaca ggctcaccat
     6241 cttctactaa aatttcactc gcaaaaggga tacgatttgg tacattccaa ccctctttaa
     6301 tcacttctac gatactttca ttttcttcta cttgcatacc actttgatat ggcaaataaa
     6361 gttttccatc tatactgcca cttacacctg ctaattcatt tggtttagca agatcgtatt
     6421 ttcttagtat gtattttact tcttgttttt tatttttaat agaaacaatc acatcttcat
     6481 gaatattttc tatattaatc acacctttaa atggagtttt gatttttggc tccacaagta
     6541 aaattgccgc atttctacga tttgctacga tatttttacc ttctttattt ttataagttt
     6601 taagattata aaatctgata aaaccttctt tttgtgcgct tacttgtcta tcttgtaaat
     6661 ccgtacttgc agttccccca ctgtggaaag ttcttagagt tagctgcgtt cctggttcac
     6721 cgatagattg agcggaaata attcctactg cttcgcctgg ttttaccaat ttaccttcac
     6781 caagattgat accataacat tttgcacaaa ttcctttttt agctttgcag gtaataggag
     6841 tgcggatatt gacacttttt ataccgcttt ctccaagaat ttttgctttt tcctcatcca
     6901 ttaaagtacc ttctgcaaaa agcacagaat ttgtaatagg atcaatcaca tcttcagcta
     6961 aaaccctgcc taaaattctt tcttctaaag tttctataat agagctatct gcggtaattt
     7021 cattgatttc aacaccctca tgcgttccac aatcttcaat ggtaattttt acattttgcg
     7081 caacatcgat gagttttctt gtcaaataac ccgcatttgc tgttttaaga gcggtatctg
     7141 ctagaccttt tctagcaccg tgagttgaaa taaagtattc aagaacattc aacccttcac
     7201 ggaaattcga aataatagga gtttcgataa tagaaccatc aggtttagtc ataagtcctc
     7261 tcatcgcagc aagctgagaa atttgagccg cactacccct agcaccagaa tctgccatca
     7321 tataaataga gttaaaacct tctttatctt tttctacaag cttcatcatc tcttttgaaa
     7381 ggacattatt tgtactcttc caaatatcga tgattttgtt gtatctttcc cctgaagtaa
     7441 tcaaaccaag attataagaa ttttgaattt ctcttacttg tttttttgct tcatctatag
     7501 ctttttgctt gtcattagga acaataatat ctgcaattga aattgaaata cctgctttag
     7561 ttgcatactc aaaacctaaa tttttgagtc tatctaagaa acttgctgta atctccaaac
     7621 caccttgttt ataaacataa tccacaagcg cggcaatgtc ttttttcttt aagactttat
     7681 tccagctatt ttcaggcaca aaatcaggta aaatggattt aataatcaat cttcctgctg
     7741 tagtggtaat ctttctacca tctaccatgg tttgtatact cgcatgaata tctaaacact
     7801 tactttcaag tgccatcatc acttcatcaa tgcctgtaca aattttatgc gaacctttag
     7861 cacctgcttt ttctaatgaa agataataaa ttcctaaaac catatcttgc gatggaacgg
     7921 ttacagactt accgcttgct ggcaaaagaa tattcattga tgaaagcata agcactttac
     7981 attctgcaat agcctcttga gaaagcggta catgcactgc catttgatcc ccatcaaagt
     8041 ctgcattaaa tgctgcacaa actaaaggat gaagttgtat agccttacct tccaccaaaa
     8101 caggatgaaa agcttgaata gaaagtttat gtaaagtagg tgcacggttt agcataacag
     8161 gatgcccttt taccacttct tctaaacatt cccaaacttc attagtttta ttttctatca
     8221 tttttttagc ttgttttact gtggttgcat aacctttttc ttcaagttta gctaaaagat
     8281 gtggtttaaa aagttctaaa gccatttttt taggcaaacc acattgatcc attctaagtt
     8341 ttggacccac aacaataacg ctacgacctg agaaatccac cctcttacct aataagtttt
     8401 gtctgaaacg tccctgttta cctttaataa tttcacttaa agatttcaat gggcgtttat
     8461 ttgctccctt tacagcatta gcacgacgac cgttgtcaaa aagtgcatca acagcctctt
     8521 gaagcattct tttttcattt cttataatga tttccggtgc atcaagttcc ataagttttt
     8581 taagacgtgt atttctattg ataacgcgac gatataagtc attcacatca gaaactgcaa
     8641 attttccacc atctaaagcc actaaaggac gcaaatctgg cggtaaaact ggaagatttg
     8701 taatcatcat ccattcagga cgatttggta cggcttcatc gctatcggca ttggcgttta
     8761 aatttgaatt taagaaattt tctacaactt ttaagcgttt aatgatagtt tttttcttag
     8821 cctctgaatt tgtagccgcc atttcttctt taagctgatt taaaagtgct acaagatcta
     8881 aatttgcaag taaatcacga acaacttctc cacccattct tgctttaaag ccactatttt
     8941 catagcgttg cattaaattt tgatattgct cttcgtttaa aacatcacaa tattctactt
     9001 ttttggtgct ttcattatca tagaaagcat cacctgggtt ttcaacgata taagcttcat
     9061 aataaagcac acgctcaaga tctttcatct taacacccaa aagcgttcct atacgacttg
     9121 gaagagaatt aacataccaa atatgagcca caggagttac aagctcgata tgtcccattc
     9181 tagaacgacg cacttttgaa tttgctactt caacgccaca tttttcgcac ttaacacctt
     9241 taaaacgcat ttttttatac ttgccacaaa gacattcata atctcttata ggtccaaaaa
     9301 tctttgcaca aaaaagccca tctctttcag gctttaaggt tctataattg atagtttctg
     9361 gtttttttac ttctccataa gaccatgatt tgattttttc aggacttgca agtcttagtt
     9421 gaaacgcttc gaaatcccta ggtcttgcat cttctttgat ttctattact ttaaatttac
     9481 tcattatctt catccttatc aaaaatctca acatctaaag caagagattt aagctcattg
     9541 gttaatacaa aaaatgtttc aggaattcct gttgctggaa cattttcacc ttttgtcaat
     9601 gctttataag cactaaatct accttctaca tcatctgatt tgatagttaa catttctctt
     9661 aaagtatgag ccgctccata agcttcaagt gcccaaactt ccatctcccc aaatctttgt
     9721 cccccaaaga gtgctttacc acccacaggt tgttgggtaa ctaagctgta aggtcctgta
     9781 cttcttgcat gaactttctc atcaactaag tggtggagtt ttagcatata catacatccc
     9841 acatgaacac gctctgcgat tttctcaccc gtgcgtccat cataaagttc tgttttgccg
     9901 tccatatcta tcttggccat ttcaaaaagc ttgctaaatt cttctatatt tacaccttca
     9961 aaaacaggag tagcaaattt aactccttta ctccagtctc tagcatagtt taaaagctct
    10021 tcatcgctta agcttttaat aaattctttt tcgcttgcaa gtcttggaat agaacaaatt
    10081 tcaagcattt ttgctcttaa ttctttaaga aaatcttttt gctttctgtc aaaaatttct
    10141 tgaatctgat ctccgagtct aagtccaatt aaacccaaat ggctttctaa aatttggcct
    10201 atattcatac gacttggaac gccaagtgga ttaagcgcaa tatccacgct tttgccattt
    10261 ggtaaataag gcatatccac ttcaggaact atagttgaaa ctataccttt gtttccgtgg
    10321 cgtcctgcca ttttatcacc gactttaagc tttctctttg tagcaatata aactttaaca
    10381 agcttaatta ccccacttgg taaaatatca tctttttcta aaatttcaag cttttcatcg
    10441 tgttctgctt ttaatttttt cttctcattt tggaaatgat tttttaaatc atcgtattct
    10501 ttttgaatct ctttagaata agctttaatc aaagttgtta aagtaaaacg attgattttt
    10561 tcaagttcgc taatatctgc agtttgtcct tttttataat ttttatctcc aattttttga
    10621 tcactattta aaggggcttt ggaaagaaga gcgcaaacac gaagcatttc ttctctatcc
    10681 atcatcaaaa gtctatcatg atgttctttt tctaaagcca ttttttcttt atcataagat
    10741 tttattgcgc gatcatcttt ttcatagcct tttttagtga aaattttaac atccacaaca
    10801 acaccctcta aagaagcggt tgcataaagg gatttattca caacatgtcc tgctttttct
    10861 ccaaaaatag ctcttaaaag tctttcttca ggagttggtt taacctcacc ttttggagaa
    10921 accttaccca ccaaaatcat acctggtttg atatgagtac caatttttgc aataccgctc
    10981 tcatcaagat gtgcaacatc ttcttctttt acatttggga tatctttggt aatttcttct
    11041 ataccgtctt ttagttctct tgcttcaatt tctttttcat aaatgtgcac gcttgtaaag
    11101 gtatcttcac gaataattct ctcacttaca actatagcat cctcatagtt ataaccattc
    11161 caaggcataa aagcgattaa agcattttta cctatagcaa gttcgccttg atccatagaa
    11221 ggaccatctg cgataatttg tcctgctttt actatatcac cttttttaac aataggatgt
    11281 tgaatataat ttgtattttg attggttctt aaatttttct ccatagtata atggtcaata
    11341 aatggacctt tatcatcttc acctaaaatg aaaatgcttt tattatccac tttctcaacc
    11401 acaccgccac gctttgcttt aacagcttcc caagcatcac gtgcaataat ttgttccatg
    11461 cctgttccta ctatcggagc tgaagcagta agaagtggca cagcttgacg ttgcatgttt
    11521 gaacccatta gcgctctgtt tgcatcatcg tgctctaaaa acggaatcaa agaagccgca
    11581 accccaacaa ccatacctga gcaaagatca attaattgca cttcttcgcg tcttgcaagt
    11641 atagtttcac catcttgtct agcctcaaca aattcttcta ctatattgcc tttagcatca
    11701 accttagttg aagctggtgc gataaacaag ccttcttctt gtgtcgctgt aagataaaca
    11761 acttcattag tcactttacc atttacaact tttctatatg gcgcttcaac aaagccaagt
    11821 tcatttactt ttgcataagt agaaagagtg ttaatcaaac caatattttg accttcaggt
    11881 gtttcaactg gacaaattct accataatgt gtcgcgtgaa catcacgcac ttcaaaacct
    11941 gctctttctt ttacaagtcc accttcacca agcgctgata aacgacgctt atgagtaacc
    12001 tcgcttaaag ggttggtttg atccataaat tgcgaaagct gacctcctgt aaaaaattca
    12061 atgatagttg tagtaatcat tttaggattg attaaatcat aaggcattac tttatcaaga
    12121 tccgcattta aagaagtaaa tttatctctg atcgcctttt gcatttttgc aagacctaaa
    12181 tgaagttcat tggccaaaag ttcacctata gaacggatac gacgatttcc taaatgatct
    12241 ctatcatcaa tatgtccttt accatttttt actttaatta aatattttgc agttttaata
    12301 atatcttcat tagtcaaaac agtaacatac tcaggtactt caagacctaa tttatggttc
    12361 attttcatac gacctacctt ggtaagatcg tatctttcag gattgaagaa taaatcattt
    12421 acaaaagcct tcgctgcatc ttttaccaca ggttcacctg ggcgcataac tttgtaaatt
    12481 ctaatcgcag ctaaatcatt ttcatcatcg atattttcac tttgtttaag aagttttaga
    12541 gtttctccat cttgagcaaa ggagttaata atcgctgcat caacgccatt agccaagtca
    12601 tttgctatat caaaactttt ttgctcttta atcttagcaa gcttactctc atctaacaaa
    12661 gttaaagaat caaataaaac ctctccactt tctttatcaa taataggatt tgctaaataa
    12721 cgattaagta aaatttctac aggatattct atccatttta aaccgtcttt aataagctgt
    12781 tctgcttttt tctttgtaag tctttttcca gcttgatgaa cgatttttcc tttttcatct
    12841 ttaatatcat attctattct atccataaaa tcatttggat taaattctgt taaaaattta
    12901 tcttttttca catgtatagt ctgaatagga taaaacaact taataatatc ttgtttttta
    12961 taccctaaag ctctaaaaag catagttaca ggaacttttc tacgcttgtt gattcttaca
    13021 tacaaaacat ctttggcatc gtattcaaaa taaagccacg aaccacgatc aggaataatt
    13081 tgtgctgtat aaacaagctt atttgcaacc gttgagcttt cttcttcttt aaaaataaca
    13141 ccagggcttc tatgtaattg atttacaacc accctctcaa ccccattaat gataaaagat
    13201 acacgatctg tcattaaagg aatttcgcgg atataaattt cttgttcttt aatatctttt
    13261 acgccaactt tttcccctgt tttttcatct ttttcatgca gagtaagacg gattttcatt
    13321 tttaaattta cagaataagt caaacctctt tccatgcatt cgcgaatggt atattttggc
    13381 ttgcctattt cactactaac atattcaaga ctcaatctat tttgcggatc atgaatagga
    13441 aaaattgatt taaaaacttt ttctatacca ctttcaccat tatcaagatt taaaaaataa
    13501 tcaaaactct ttttttgtaa ttgtagaaga tttgggattt ctatttgttt tgaaatgttt
    13561 gagaagtcta ctcttaaacg atttcctaat ttattatcta acatatcgca catacctcat
    13621 ggtaaatttt gtaaatttaa aaaagaagac ctaaaaatta ggtaaaaata aaaaaagaag
    13681 acttgccttg acaaatcttc ttctaacttt aaagcttaaa attacttaag ttctacttta
    13741 gcaccagctt cttcaagttg ttttttagct tcctcagctt cagctttagc cacaccctct
    13801 tttagagttg aaggagtttg ctcaactgca tcttttgctt ctttaagacc aaggcctgta
    13861 agagcacgaa cgattttaat aacttcaatc tttttagcac cgccatcagt taaaacgata
    13921 tcaaattcag ttttttcttc agcagcagct gcagcaccac cagctgcagc accaccagct
    13981 accattacag gggcagcaga cacaccaaat ttttcttcaa attcttttac aagttctgat
    14041 aactcaagaa cacttaaatt tgaaatatat tctaatacat cttctttaga aattgccatt
    14101 ttttatcctt ttatttaatt tattcagatt cttttttatt tttaagcgca tttaaaccta
    14161 ttgtgaaatt ggtaattggc gcattccaaa cttgcaaaag catagcaagc aactcattgc
    14221 gtgaaggcat tttagcaaga gctttaacct tagcaacatc tgcaacttcg ccttcaatat
    14281 aagctgtttt gatttcaaat ttatcgttat tttcttcaaa tttagcagct acttttgaaa
    14341 cacttagctg atcttcgccc caaagataaa tatttgtatc tttaagaact agacctgttt
    14401 taccggaatt gttaagagca atgttagcca aagtattttt aacaatttga acttttacat
    14461 tgttttctct tgcattattt ctaagctctt ctagtttttt tgtgctaaga cctctgtaat
    14521 tacaaactac aatagcttca ctagctttaa aaccttcttc aagtttagca ataatctcaa
    14581 ctttttcgct tctagtcaca ttttctcctt tccgattgag atttcaagta gagtggaaat
    14641 ccaattaagc ttacgcctcg actatcttca atctaaaata aacatctcaa aaaatcaaaa
    14701 attttttcaa atgtttattt tagaacaaaa gagttgcaaa aaagcaactc ttatttcata
    14761 tcaagcaatt cttgtgtttc aagctttaca gaagggctca ttgttaaaga taaagccgca
    14821 tttttaatat atctaccttt agctgcggca ggtttatgtt tgttaattgc ctttacaaaa
    14881 gtgctaacat tgtcccataa ttgttctttg gaaaaactta ctttaccaag acctgcatgg
    14941 atatttcctt gcttatcaac acggaaattt acctgaccac tttttgcatt attaactgct
    15001 tgagcaacat ccatagtcac tgttccagtt ttaggatttg gcattaaacc ttttgggcct
    15061 aaaattctac caactttacc aacaagtccc attaaatttg gagtagcaat caaaacatca
    15121 aaattcatat tacctttttg aatttcttct actaaatcat cgctacccac aatatctgca
    15181 ccagcatttt tcgcttcatc agcttttgcg tcttttgcaa ttacagcaac acgaactttt
    15241 ttacccgttc cagcaggtaa aacgacagat cctcttacca tttgatctgc atgtcttgga
    15301 tcaacattaa gttttaaagc aatttctaca gtctcatcaa atttagcaga ctttaaagtc
    15361 tttattgtat caattgcatc gcttaaagca tactctttat ttgaatcaat tttttgtgat
    15421 aattctttta atctttttgc tatcttagcc atttattttc tccgcatttt aaagtgctac
    15481 cgccttttac cttggcggtg aaaggattaa tctacgattt caacacccat agaacgagct
    15541 gaacctgcaa taattttagc agcttgatct ctatctttag tatttaaatc tgcaattttc
    15601 ttatctacta tttctaaaac ttgagcacga gttaacttac ccaccttatt tttaagtgga
    15661 ttatccgtac ctttagaaat tccagctgct tttttgatca aatccgtagc tggcggttgt
    15721 tttgtaataa aagtaaaact tttatctgca taaacagtga taacaacagg gatattaaaa
    15781 cctgccatat cttttgttct ttcattaaaa gccttacaaa actccataat attaacacct
    15841 tgctgaccca aagcaggacc aacaggtggt gatgggtttg cttttgtggc agcaatttgc
    15901 aatttaattt cgcctacgac ttttttagcc ataacaaatc tccttacttg atataaatta
    15961 aattattttc tcaacttgag aatataagat ctccactgga gttgagcgtc caaaaataga
    16021 aacatttaat tttaataaac cacgaaccat atcatactct tctacaattg cagtaaagtt
    16081 tgcaaatggc ccttctgtga ttctcacatt ttccccttct tcaaaagaaa tctttggttt
    16141 aggcgctgca cgattgtgaa ctttttccaa aatcaaatta atatcttttt ctgttaaagg
    16201 ggttggcttt ttggattctc caataaaacg accaaccttt ggaagagatt gaatgcgatg
    16261 ccaaagctct gtatttaaat caagaagtgc aaaaacgtat cctgaataca aacttctttc
    16321 gctaatcttc tcctttccat tcttaaattc aataacatct tcagttggaa caacaatttc
    16381 tttaagttgt tcttcaattc cgttatcttt tactaaattt tcaatggctc ttttaactgc
    16441 catttcactg ccagcataag tttgaattgc ataccattta tgagtactca tttactctcc
    16501 ttatacgatc gcagaaacaa tagaggacat aagccaatcc actaacgcca aaaacaaaga
    16561 aatcaccgca acaaccacaa aaactgtaat ataggcattt cttacctgtt cttttaaagg
    16621 aaaaattact ttccttaatt cggcttttga taatttaaaa taagttatta atttttccat
    16681 ttatttaaac cttaattatg gcagggcaag agggattcga acccccaacc atcggatttg
    16741 gaatccggcg ctctaccgtt ggagctattg ccctaagggc gcaagcttaa ctttttagct
    16801 taacttcttt gtgaagtgta tgttttttta atcttgggca atattttttt aattctaatt
    16861 tttcagtagt atttttacta tttttatagg tgctataatt aatatcacca cattcttcac
    16921 actttaaacc aactttaatt ctcatttcaa ttttccttaa aaaattaaag ccaagctttt
    16981 aacttggctt tattaaatta tttaataatt ttagaaacaa cacctgaacc aacagtttta
    17041 ccaccttcac gaatagcaaa acgagttcct tcttcaagtg ctactggagc gatcaagctt
    17101 acagtaattc tcacattttc acctggcata accatttcaa caccatcagc taatttaatc
    17161 gaacctgtaa catcagttgt tcttacataa aactgtggtc tatagttgtt aaagaatgga
    17221 gtatgtctac caccttcatc tttatttaag atataaactt cagcttcgaa gtcagtgtgt
    17281 ggagtaattg attttggttt agcaagaacc ataccacgga taacttcttc ctttttagta
    17341 ccacgaagaa gaacacctac gttatctcct gcttcgcctt gatccatttc ttttctgaac
    17401 atttcaacac ctgttacagt tgttgtttga gtatctttaa taccaacgat ttcgatagta
    17461 tcacctactt ttacaacacc tttttcaatt ctacctgtaa caacagtacc acgacctgaa
    17521 attgagaaaa cgtcttctat tggcattaag aagtcttttt cagtatcacg agttggagtt
    17581 ggaatatagc tatcaactgc agccataaga tccataattt ttgctgacca ttcaccatct
    17641 tgtccagctt tagcttcttc aagagctttt aaagcagaac cagaaataat aggtgtatca
    17701 tcgcctggga aatcataaga gcttaataat tctctaattt ccatttcaac taactctaga
    17761 agttcagcat catcaaccat atctgcttta ttcataaaaa caacaatata tggaacgcct
    17821 acttgacgag aaagaagaat gtgttctcta gtttgtggca taggaccatc tgcagcagaa
    17881 acaaccaaga tcgctccatc catttgtgca gcacctgtaa tcatgttttt aacataatct
    17941 gcgtgacctg ggcagtcaac gtgtgcatag tgacgattgt ctgtttcata ttcaatatga
    18001 gaagtagcaa tagtaatacc acgctctttt tcttctggag cattatcgat attatcataa
    18061 tctttaagct ctgctaaacc tcttctagaa agaacagcag aaatagcagc tgttaaagta
    18121 gttttaccat ggtcaacgtg accaatagta ccaatattta cgtgtggctt attacgtgaa
    18181 aatttttctt tagccatttt tttcctccgt ataaaaaata aattgagtaa agcaagtctt
    18241 atatctatat aattttttca attcatggag ctcatagcgg gaattgaacc cgcgacctct
    18301 cccttaccaa gggagtgctc tacctctgag ccatacgagc gctcagaaaa attatacata
    18361 ataatagaca acaaaaactc ttaaatggga tatatactgt aagttaaagg ttttaaaata
    18421 cagctcccag ttcttttaaa ttgttggagc gggaaacggg actcgaaccc gcgaccctca
    18481 gcttggaagg ctgatgctct agccaactga gctactcccg caaagcatgg tggtgagtcg
    18541 tggattcgaa ccacggaagg cgaaagccag cagatttaca gtctgccctc gttggccact
    18601 tgagtaactc accataaaaa tattgctttt tcaatattct ggtcaaacac tgctaaaata
    18661 aatggagctg gttaagggac ttgaaccccc gacctgctgc ttacaaggca gctgctctac
    18721 caactgagct aaaccagcaa aaataaaagt gagattataa ctcaaaaaaa aatttttgtc
    18781 aagacttttt tagtttttct ataaaatttt agtcttgtaa agtttattat cataaaccaa
    18841 tattattttt atctatttat gataatcaaa caaatttaaa aatttctttg ctctttcgct
    18901 ttttggattt tcaaaaaaac ttttaggatc attttcttcg atgatttttc cttcatccat
    18961 aaaaataatt ttatctgcta cagctttagc aaaacccatt tcatgagtaa caataagcat
    19021 agtcataccc tcttttgcaa gatttagcat tacctctaaa acttctctaa caatctcagg
    19081 atccaacgct gctgtaacct catcaaaaag cattaactca ggattcatac atagacttct
    19141 tactatggca attctttgct tttgtcctcc gctaagttct cttggataag catgaatttt
    19201 atgcaaaagc cccacctttt caagccaaat tttagcctct tttaaaacct catctttctt
    19261 tcttttttgc actttcatag gccctaaaag tatattttct tcaacactta aatgctcaaa
    19321 aagctcataa gattgaaaaa ccataccaac tttttgacgc attcttggcc attctttaaa
    19381 atctttatct attttctcat tatcaatata aatattacca cttgcaatct cttcaagccc
    19441 attaatacaa cgcaaaagcg tagattttcc acatccgcta ggacctaaaa tcaccacaac
    19501 ttctttagcc ttaacttcta aattaatatc ttttaaggcg tgatgcgaac cataatactt
    19561 ttgtaaattt tctattttta gtatgctcat tttagctcca ttttttctct aattttcttg
    19621 aatataaagt gataggataa caaagtataa aaaagataaa aaaaatcaaa ccataaataa
    19681 taaaaggtgc aaaatcattt ctattatgaa attctataat ttgttgccct acttttacaa
    19741 gctctaccgc gccgattaaa taagcaaagg ttgtactttt aatcatacga gtaagtaaat
    19801 tcatgctcat aggagttaaa cgacgcatag cttgtggaat aataatataa acaaaacttt
    19861 gcaccgtatt taaacctaaa gatgatgcac tttcatactg atgttttgga atactctgca
    19921 aggaaacacg caccaaatcc atcatctcaa aacaacccca aatgctaaaa acaataatag
    19981 ctgcacttac agaactcaaa tcccacccaa accatctagg aaaaccaaaa tacaccacaa
    20041 aaagccatac taaaagtggc ataacacgca caaattctaa acccaaacga caaaaagcat
    20101 agatataggt atttttaaaa ctcattaaaa ttcctaaaaa taacccacct atcgaagtaa
    20161 taataatgct gataaatgaa atttcaagag tgacaaaaag cccttgccag agtcttaaaa
    20221 gcgtatcggt atttaaaagt tcaagcatga agcaaccttt tttcaaactt tagcaaaata
    20281 aaagacaaag gtaagataat acacaaatat cccataaaca acaaaaacaa tagctcatct
    20341 gtcttatagg ttaaggaatt taaactcttc attaaattca ccaaatctgg caaggcaata
    20401 atactaacga ctgaagtttc tttgattaaa aatataatat tagcactaat acttggcata
    20461 gaaatagcca aagcttgcgg caaaatcaca taacacaaat ttccaaattt tgaaaaaccc
    20521 aaagaaagtc ccgcttcaaa ctgctgtttt cttatggctt caaatcccgc tcttaaactt
    20581 tcagccatat aagaacctcc taaaaaacta agtcctacta tagcacaagc aaaagaaggc
    20641 cttaaagttt cttctacgct taagcaaatc aaatcaagcg gtggaatttg ctctaaatgt
    20701 atattaaatt taggtaaagc ataatataag aaaaaaagtt gaattaataa aggcgtattt
    20761 cttgaaaact ctatataaag cttgcaaata ttttctaaaa tttttatttt aaaataactc
    20821 attaaaatgc aaaacaagcc tattatcaaa gaaaaaataa ttccaaaaaa gcttagtttt
    20881 atcgtaagcc aagcagccgt taaaaaagca ggagcttgaa ctaatataaa atcaaaatcc
    20941 attctctacc ttaaattttt accaaagttc tttcatgatc atatctttat ttaaaatttc
    21001 aattctacct ttttttgtat caataagttc tgaaatttta agttctttta acactcgaga
    21061 taaagattgt gctctaacat ttaaatcaat tgcaatttgt ttttgtgaaa ttgtatctaa
    21121 att
//
LOCUS       DAEDTT010000014        20641 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.014, whole genome shotgun sequence.
ACCESSION   DAEDTT010000014 DAEDTT010000000
VERSION     DAEDTT010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20641
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.014"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..1212)
                     /locus_tag="KLC54_000422"
     CDS             complement(<1..1212)
                     /locus_tag="KLC54_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HBD9176826.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLNDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFY"
     gene            complement(1209..1883)
                     /locus_tag="KLC54_000423"
     CDS             complement(1209..1883)
                     /locus_tag="KLC54_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HBD9176827.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIISSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(1959..3377)
                     /gene="htrA"
                     /locus_tag="KLC54_000424"
     CDS             complement(1959..3377)
                     /gene="htrA"
                     /locus_tag="KLC54_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HBD9176828.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTTTANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFPQRKGKNDKEVVSS
                     LGSGVIISKDGYIVTNNHVVDDADTITVNLPGSDTEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTISALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNDKIIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGAQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            3577..4470
                     /locus_tag="KLC54_000425"
     CDS             3577..4470
                     /locus_tag="KLC54_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HBD9176829.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNAGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEENLDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            4486..4860
                     /gene="hspR"
                     /locus_tag="KLC54_000426"
     CDS             4486..4860
                     /gene="hspR"
                     /locus_tag="KLC54_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HBD9176830.1"
                     /translation="MEHHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQDK
                     EAASKAVVKHKNSFDLIFYEKK"
     gene            4867..6492
                     /locus_tag="KLC54_000427"
     CDS             4867..6492
                     /locus_tag="KLC54_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HBD9176831.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTTLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            6502..6834
                     /locus_tag="KLC54_000428"
     CDS             6502..6834
                     /locus_tag="KLC54_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176832.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKSELLNLANALDKQKKQGEKKEKH
                     KNYLKDYE"
     gene            6831..7451
                     /locus_tag="KLC54_000429"
     CDS             6831..7451
                     /locus_tag="KLC54_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HBD9176833.1"
                     /translation="MINVFFDMDGTLIDSANAISCTVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSSFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHQIIPYFDKILGVNLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKDLKENEFSNASELKGFLEKYL"
     gene            7507..9501
                     /locus_tag="KLC54_000430"
     CDS             7507..9501
                     /locus_tag="KLC54_000430"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HBD9176834.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWKNVLEEYRLVNDFKF
                     YYTPRRLVFFHENFAEKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKAGISENELT
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMIEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSAKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPNKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPGEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYEICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSSHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSQNTDLIHINQSVNALIELSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            9498..10319
                     /locus_tag="KLC54_000431"
     CDS             9498..10319
                     /locus_tag="KLC54_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HBD9176835.1"
                     /translation="MKALWILLSLTLWLFGAQNLELIKGQALFLELDKKNFLSLKNND
                     KNIPTFAHPKNQEKILAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     VENKKIFPPKTVQERIAKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAATGTPIYAANSGIVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KINVKVGQKIKKGELIGLSGASGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            10316..11266
                     /locus_tag="KLC54_000432"
     CDS             10316..11266
                     /locus_tag="KLC54_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HBD9176836.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFSTLLAK
                     HFLNLIDKKILQPPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFVIEPHEKLK
                     NLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFTCELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLTKGELSLELENFFKDLDQACERFIFAGFDYGTLNPQNFSLRIY
                     QKHEVFSPFEVSLKDFFGKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLALMDFGFE
                     DLLEYTKNKNIKTYESFLSQAKILFFNFDEKFHFFEFQKN"
     gene            complement(11263..12237)
                     /locus_tag="KLC54_000433"
     CDS             complement(11263..12237)
                     /locus_tag="KLC54_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HBD9176837.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNALSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKEEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFRKSFKSFDFGIISFYEKNCHSY
                     YKSCISYKKLIKKYPKFIINIKDKKLKIHFLIANPYLKHLAFMAFDEVAMIKKELRSL
                     GVKTVVLNSGVPTTLSALKQNINYEKYEATRVNGKKLCHKDFLNYAIKLFHMEEKKAI
                     KEVGMMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
     gene            12293..13066
                     /locus_tag="KLC54_000434"
     CDS             12293..13066
                     /locus_tag="KLC54_000434"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HBD9176838.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIAAKHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPINLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHTKLKQSIEKLQNANIEVSLFINPSLEDIEKSKNLKAQFIELHTGHYANLHNAL
                     FSNISHTAFALKELGQDKKNLQAQFEKELQNLELCAKKGTELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            13063..14157
                     /gene="pdxA"
                     /locus_tag="KLC54_000435"
     CDS             13063..14157
                     /gene="pdxA"
                     /locus_tag="KLC54_000435"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HBD9176839.1"
                     /translation="MKKLAISIGDINGIGLEILVRSHEELSKICTPFYFIHENLLNKA
                     SKLLNLKLFNAKIVAFKDDKDYEFNFIKKENSLEIYSFCLPLGFKVDENFEIKAGEID
                     AKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKIGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLHSKKDEKFFKKALKDENLQKELLLNFKGKGVYLP
                     YPLVADTAFTKAGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLSLKT"
     gene            complement(14147..14749)
                     /locus_tag="KLC54_000436"
     CDS             complement(14147..14749)
                     /locus_tag="KLC54_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176840.1"
                     /translation="MKKIIFLFGLSLASLEALSFDELIYKDEVKPSFDCSKVKDDGKS
                     DDELMICNEIGVRNEFENKKLALADNIYSSLYQNISKKADKKMKKDFKAISKKMLKER
                     KICIKNMQNTKAGENPILPLLNASDCMQEAYIKALLELMQRAKKDTKTKEVLEQIFKN
                     KVDKYENLLTQSLNTNKDLQDFIDSLAKEDLIDSRAKFKF"
     gene            14863..16062
                     /locus_tag="KLC54_000437"
     CDS             14863..16062
                     /locus_tag="KLC54_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD9176841.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLIDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSHFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAIVPNDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKLLVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSIAKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLAGLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSLKKI"
     gene            16118..16438
                     /gene="ciaC"
                     /locus_tag="KLC54_000438"
     CDS             16118..16438
                     /gene="ciaC"
                     /locus_tag="KLC54_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HBD9176842.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     EEKTSSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFATIDAGNATN
                     NTKA"
     gene            16618..17640
                     /locus_tag="KLC54_000439"
     CDS             16618..17640
                     /locus_tag="KLC54_000439"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HBD9176843.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFDNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVEKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            17637..18539
                     /locus_tag="KLC54_000440"
     CDS             17637..18539
                     /locus_tag="KLC54_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HBD9176844.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKVVLEKNVEFDFLTLTANGEPSLYPHLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKA"
     gene            complement(18536..19732)
                     /locus_tag="KLC54_000441"
     CDS             complement(18536..19732)
                     /locus_tag="KLC54_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176845.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVAEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFYMQNDFLNFQKKIDVDSVLDLLKEKFETTGQNLTKTS
                     HEKDRYLHLLEENLYQLGNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKILNENVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCTL
                     KFKTPYQNNVLLFKQNDFDATLFFNIIEKQCDKNVCINSFSQLKQELSKETYRLILLD
                     YELIKFDLEQMRNLLSAYKKQHPQSHIIFFSKEKVGDFDCVSEVLSDVSRNDLITLLR
                     KYLPKA"
     gene            complement(19734..>20641)
                     /locus_tag="KLC54_000442"
     CDS             complement(19734..>20641)
                     /locus_tag="KLC54_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="excinuclease ABC subunit C"
                     /protein_id="HBD9176846.1"
                     /translation="QLILENFSMDIPLLANVIYVYEEFEDRMLLEEILSQRFDKKISI
                     KIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKSYFELENLPNDIEIFDNSH
                     LQGVANVGAMVTYSANSWDKSKYRKFHLKHKNDYDQMREVLMRRALDFDKIPPPDLWL
                     IDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGARDKIHSLKGEFSLSI
                     NDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNLGLSSGVIQKLLAYYGNFE
                     SIYKADFKDLAMLVGKKVAQKIKEN"
BASE COUNT         7428 a         3203 c         2959 g         7051 t
ORIGIN      
        1 ataaaacaaa tttaccccat cttcatataa ataatcaagc ttcattccat gtgtttctaa
       61 aatagtattt acaatataaa gccctaatcc aaaacttgat ttttgttttg atccttgagt
      121 aaaagcttga gtatagtatt ctaaagtatt gttaagctca ggaccacgat ttttaaaaca
      181 aatataatca tctataatat caatttgcac aaacccatct tcagaatgtt taataccatt
      241 atctatcata tttttaatcg ccgtagtaaa aagtttaaaa tccacattta caaaaaaact
      301 ttcttccata aaaatacgta tattgctatc atctcgcatt gcaatttctt tggcttcatc
      361 taaaacatct aaaatattgt atttttttct atttataaaa gcagcccctg aagtaatttg
      421 ctcaatagca gcaaattcat taattaaaat ttcaagtcta gtaaaaaccc catttaagcg
      481 ctctttatat ttattatctt ctatcatttc taaagttaaa agccccttag taataggagt
      541 tttgagttca tgcataatat ttcttaaaaa aaactgacga gattggttta gctttcgaat
      601 ttgaacaatg gcttgataaa aagcttcact tacttgtgaa atttcatcca ccccagtgct
      661 tacatcttct atatcgttaa gctttccttg ggcaaattta tcaatttgtt ttttaagtct
      721 tttaagtggt tttaattttt taaatatata aatataaagc aatacaagaa tacaaatcac
      781 agctacagct atagctttga taataaaata cctataggtt tgataatctt gatccttata
      841 aagataaacc tttccatcat aaataatatt taaatacacc tgtctattat aagaaataat
      901 ctcgattaag ccattattaa cctcaaccct agctaaaaca tcacctctaa aaagaatttt
      961 acggatctgc tttgcttctg ttatctcatc cattttatta taattttttg tctgctcttc
     1021 aaattctttt tcgctgataa ctcctgcaaa atttaagagc cttgcattag ctatcaaaga
     1081 atattttgta tttaattctc tagtataatt ttgctgatcg tattctataa gccacaaaaa
     1141 gccaagtata acactaaccc cagcaaaaat aaaaataaaa gttatagtat aaaaaatcga
     1201 agatttattc attgagtaag cttataacct attccacgta tagagtgaat atattttgga
     1261 gtttttggat catctcccat cttttgacga attctactga taataacgtc tatactttta
     1321 ttactagaat cctcactaat agaagaacaa ttataaacaa gctcttcacg acttaccact
     1381 ccaccctctt ttttaatcaa atagcttaaa atatcaaatt cagcattagt taaagtaagc
     1441 tcttgtcctt tcatggtaat aatatgctta tattgatcat aaacaagatc ttttacactt
     1501 tttgctatgg cgctttttgt atttgaaata cgtcttaaat gacttttaat acgtgcttgt
     1561 aattcttttg gattataagg ttttggtagg taatcatctg ctccaagctc taaagcatta
     1621 accttatctg taatatcatg tcttgcactt gaaataataa taggcgtatc atacttttta
     1681 cgaatctctt cacacacttc aagcccatca agtcctggca aagaaaggtc taaaatgata
     1741 agctgatact cttttaatgc gagcttagaa aggcctatat aaggctcatg agctatatca
     1801 actttcatat caaatttttc caaatattca gctgtaattt ctgctaattc taaatcgtct
     1861 tctatcataa gaatatttgt catagttttc ctttatttta aacttaattt taattttaaa
     1921 ctaaaattta taacgaaagg aaaatccttc cgttattttt atttaagcac aagcaaagtc
     1981 gcaaaaccat tgcgatatac ccaaactttg gtaaattctt ttttattaac ttgttttaaa
     2041 gcttgttcta aatcttttaa atttttaatt tcgctttgtc caacacctat gataatatca
     2101 ccctcttgga aaccagaatt ttttcctttg ctcttttctt taacactatc aaccaaaaca
     2161 ccattaacat cttttggaat ttgcaaacga tccttaagtc ttggatctaa atttctcaaa
     2221 ctcaaaccat caatcagatc actttgtgcg cctttaggat tttctttttc acctttaaga
     2281 ataaaacttg cttgcttatt ttctccatct ctttcgtaac ttaatgaaat tttttgacca
     2341 atctctaaag ttcctatata atttttaaga tcaataggac tttttataat cttatcatta
     2401 actttagtaa ctaaatctcc acgcttaagc cctgcttcat cagcacttga acctttttga
     2461 acatcagtaa ttaaagctcc ttcttgattt ttgtaagctt ttttagtatc accttgcaaa
     2521 gctgaaatag tcacacctaa aaatcctcta tcaatcttgc ctttttcaat aagtttttta
     2581 gctatatctt taaccatatt tgaaggtata gcaaaaccta tgccgttatt tccaccgcca
     2641 cgagaaagaa tagctgaatt aatacctact aaatatccac gactatccac caaagctcca
     2701 cctgaatttc ctggattgat agaagcatct gtttgtataa aattttcata ttgatttaaa
     2761 cctatattgt ctttgtttaa agcagatatt atcccacttg taacactaaa accgactcca
     2821 aaaggatttc caagtgcaaa aacaacatct ccttccatta aatcatcaga atttgtaaaa
     2881 gtaatagctg aaagattatt agcctctatt tttataacag ccaaatctgt ttttggatct
     2941 ttacctataa gttttgcttt atattctgta tcgcttcctg gtaaattcac tgtaatcgta
     3001 tcagcatcat ctacaacgtg attatttgtt actatataac catcttttga aataatcacc
     3061 cctgatccca aagaactcac cacttcttta tcattttttc cttttctttg aggaaaatca
     3121 aaatcaaaaa attgtttaaa ataaggatca ttaaagaaat catccaaagg acttggacga
     3181 ttcgctcttg taatagtttt tgaggtggaa atattaacca ctgatttttt tgcatcttta
     3241 atagaatcat gataagaaag cactgcattt ccagcagcag gattcacacg attagccgtt
     3301 gtggtcgatt cgttaaaatt aatacttgca gcaaataaag cacttgctaa acttaatgat
     3361 aaaaaaatct ttttcatttc atttcctttt gttcttaaag ataaattatc tcgtaaaata
     3421 ttttactgtc ttcatagtat aaaaccgaaa atttacaaaa ttgtaaataa aaccttgagt
     3481 gataaaaatt tataaaactt gattgactta ggctaaagtt tatgttataa tttaatcctt
     3541 tatataatca agtaaaaatt tttaaggaaa tataacatga atagtttata cgaaactctt
     3601 ggagttagca aaaatgctag tgcagatgaa ataaaaaaag cttaccgtcg cctagctaga
     3661 aaatatcatc ctgatatcaa caaagaaaaa ggcgcagaag aaaaatttaa agaaattaat
     3721 gctgcttatg aaattttaag tgacgaaaaa aaacgagctc agtatgacca atacggcgat
     3781 tctatgtttg gtggacaaag ttttcatgat ttttcaagaa atgctggtgg ggtaaattta
     3841 gacgatattt taaaagatct ctttggagga ggctttggtg gacgctcaag agggggtttt
     3901 aacggctttt cttcaaaagg ctttagcagt ggttttggag gatttggagg ttttgaagaa
     3961 gaaaatttag acagcaatct agagcttcac attcctttcg aaaaagctgt taaaggcggg
     4021 gaacatagtt ttaattttca aggcgaaacc attaaattta aaattccaca cggtataaaa
     4081 gaaggcgaga aactaagaat tcgctctaaa ggaaaacaaa gcagaaatgg agctagaggc
     4141 gatttaatca ttattgtaaa aatagaagaa agtcctattt acacaagaga agatgatgat
     4201 ttatatcaaa aggttgatat ttctttaaaa actgcacttt ttggtggaaa aataaatata
     4261 aaaacactca aagaaggtaa ggaagaagcg acaattaaca taacgcctaa ttcaaaaaat
     4321 aaccaaaaaa ttcgtttaaa aggttatggg gtgcaaaata gaaaaagtga tatttatggg
     4381 gatatgtatt tgattttaaa tgttgttttg ccaaatttag atactcttga tgaaaaattt
     4441 atagaactct taaaagaaaa attaccttaa agaaaggaat aaaatatgga acaccattat
     4501 gatgaacctg tatatttaat cagtgttgtg gctaaagttt taagcataca tccacaaacc
     4561 ttaaggcaat acgaaagaga aggattgata gagccaagta gaaccgatgg aaaaataaga
     4621 ctttattctc aaagggatat tgaccgtatt aaacttatat tgcgtttaac aagagacatg
     4681 ggaatcaatc ttgctggagt agatgttatc ttaaaattga aaaaccaact tcacgaattt
     4741 gaaaatttaa ttgatgaact acgcttagaa ttaagcaaac aacaagataa agaagcggct
     4801 agtaaagccg ttgttaagca taaaaatagc tttgatttga ttttttatga gaaaaaataa
     4861 aaaataatgg ataatttttt agaaattttt ttaatcaccg ttgctatagc tatagtttta
     4921 aatgtcatat ttaaaaaatt tgaaattcca actatcattg gatatatagc tgctggagaa
     4981 atcatttctg aaatttatca tttaagtggc aaaggcgaaa tcacccatat agccgaattt
     5041 ggtatagtgt ttttaatgtt taccataggg cttgaatttt cttttaagca tttaatggca
     5101 atgaaacaag aagttttttt aaacggctct ttacagatgc ttacttgtgg ctttgttttt
     5161 atgctacttg ctataggaat tttaggactt ggagataaaa gcgctaccat agtaggcttt
     5221 gcactagcac tttcttcaac cgcagtggtg cttaaaattt taaatgataa tggcgatata
     5281 aatgagcaat atggtagaaa agcattggga attttgcttt ttcaggatat agctgttatt
     5341 cctttgcttt tgcttgtaga tattttttca tccaacaatc aaaacataga aaaactcctt
     5401 tttaccactt taatttcagc acttatttta atcactttat tatttttcat aggtaaatat
     5461 ctagtggata gaatttttag actcattatc cacacctctt ctcaggaaat ttttattagt
     5521 actgttttat ttatggttat tggagcaagt tttttagcaa attattttgg attttcttat
     5581 tctttgggtg cttttatagc aggtgctttg atagcagaaa caaaatataa acacaaaata
     5641 gaagcggact taatcccatt tagagatttg cttttagggc tttttttcat aactgtaggc
     5701 atgcaaattc aacttgatgt agtggcgcaa aattggtttt taatcatagt tttaaccctt
     5761 cttgtaatgg ctttaaaatt tggcatagtt tttggctttt tatttcttta caccaaaaaa
     5821 agagtagcgc ttaaaacagc ttttgccata gcgcaaattg gcgaattcgc cctagcaatt
     5881 ttttctcttt tacaagcaaa aaatatgctt gatatcaaaa cttcacaaat tttaattgtt
     5941 gtttctatct taaccatgat tatcacgcct tttattttaa acaatataag aaaaattacc
     6001 aatgttgtag aagatatagc acttaatacc aacgctgtgc aaaatattga cagcaatatc
     6061 aagcttaaaa atcatcttgt tgtttttggc tacggacgtt taggtcaaga agtcgtacaa
     6121 aaaatcaaaa acacaggcgt accttatctt gttttagaaa gtgatttaaa tttagtagaa
     6181 cttggagtta gtcggggtga aaatgtcgtt tttgccaatg ctgctcaaga agaaacctta
     6241 aaaattgcca atatagaaga atgtgccgta gctattatca cagttacaaa tgaagctaaa
     6301 cttgaaattt tatgtcaagt gctagctaat tatccaaaac ctatagatac tatcattcat
     6361 gtaaatggaa ctttgaaaaa gatgcttttt tctagcatag atgaaaatat acgcatcatt
     6421 cgctctgaaa aagtaatcgc tagaaattta gttcaagaag cactagaatg ccgcattcat
     6481 aaaaatacct aaggaagaat tttgacaaaa aatgaagaaa aagccttacg cgtaaaatac
     6541 ctaagaaatc ttgaaaaatt tttcaatggc gctatatctg cacttaaaaa agaagatttt
     6601 gataaaacta aatttgaaga aagaatgtta aaaaatgcta aattttttga aaaaaatccc
     6661 gcggtaaatc ttaactcaac ttacgcaaaa aatcttgaat tttttgtcaa tgcttgttta
     6721 gatttttcca aagaaaaaag cgaactttta aatcttgcca atgctttaga taagcaaaaa
     6781 aaacaaggtg aaaaaaaaga aaaacataaa aattatttaa aggattatga atgattaatg
     6841 tattttttga tatggatgga actttaatcg atagcgcaaa tgccatttct tgtacagtca
     6901 atgaaataag acaggattta aacctagccc cactttcaag agaaatcatt atgcaaacca
     6961 tcaatactcc taatattgac tgggcaaaag aactttataa tatagaaaat ttccatcatt
     7021 ctagttttaa agaaggctat gaaaaatatt ttgtcaaaca ctatgaacaa agcgtggtgc
     7081 tttttgaagg ggtgaaagaa cttttggaat ttttaaaaag caaaaattgt tttttagcta
     7141 ttgctactaa cgccccgcaa agctcacttt caaacatact taaaaaacat caaatcattc
     7201 cttattttga taaaatttta ggcgtaaact tgggcataga acccaaacct catcctatga
     7261 tgctagagct tttaaaaagt gaggctccat ataaaacaag cgtttttata ggggatagtc
     7321 aaaaagataa agaatgtgct aaaaatgcta atttgcctta ttttcatgcc aaatggtatc
     7381 aaaaagattt aaaagaaaat gaatttagca acgctagtga acttaaaggt tttttggaaa
     7441 agtatttata agttttttaa tgaaatttta gttaaaatta gaaataaatt ttaaaaagag
     7501 taaattatga gtgaattatt aatagaaatt ggcacagaag aattacctgc tattcctttg
     7561 ctaaaagaat tagctaatat agaaaaaaaa tggaaaaatg ttttagaaga ataccgcttg
     7621 gtaaatgatt ttaaatttta ttatactccg cgtcgtttag ttttttttca tgaaaatttt
     7681 gcagaaaaac aagaagatag ctttgctgaa tttataggag cacctaaaaa tgtcgcctat
     7741 aaagatgggg ttttaactcc tgcggggcaa agcttcctac aaaaagcagg gatcagtgaa
     7801 aatgaactca cttttaaaga aatcaaaggc aaggaagttt tataccatca aaaagctatt
     7861 aaaggtttac aaagtcaaga aattttagga gaaatgatag aaaaatttct aaaaagtctt
     7921 agttttggca aaagtatgcg ctggggtgca aattcttttg aattcatccg tgcgatccgt
     7981 tctatagctt gcattttaaa tgatgaactt gtaaattttc aaagttatgg ggtaaaaagt
     8041 gctaaaaaaa ctttcattca cagaagtgta agttatgatt tgcaagattt taacaatgca
     8101 aaagaatatt ttgaactact agaaaaaaac tatattatcc ttgatccaaa caaaagaaaa
     8161 gaaaaaatac ttgagcaatt taaactcata gaaagtcaaa aaaatataca aattggagag
     8221 gatgaagaac ttttagctga agtagttgct atcacagaat accctaatgc acttttagga
     8281 agctttgaag aagaattttt agaaattcct ggcgaagtaa tcatcacttc aatgagagaa
     8341 aatcaacgtt attttgcagt ttttaacgat aaaggcttaa gtaatcattt tatagtagta
     8401 agcaatgcag tatgtaaaga ttattcaaaa atcatacatg gaaatgaaag agttttgcgt
     8461 gcaagactta gcgatgcaat gtttttttat caaaatgatt tacaaaatgg tttaaaacct
     8521 gaaaaacttg ccaaaatgac ctatcttgaa ggtttaggca caatgcaaga taaaagttta
     8581 agagagatta aaattgctga aattttatgt caaatgcttc ataatgataa aatcgaaaat
     8641 atcagcacag cactaaaata cgccaaagca gacttagcca cacaaatggt ttatgaattt
     8701 actgatttgc aaggcattat gggaagttat tatgcgcaaa aaatgggctt agattatgaa
     8761 atttgcttag ccatcaaaga acaatatctt cctaattccg aacaagctcc acttccaagc
     8821 acggaatttt caagcatagt agcccttgca aacaagcttg atacccttat aggacttttt
     8881 agcataggaa aaattccaag cggaacaaag gatccttatg ccttaagaag agcagccaat
     8941 gggatcatta aaatcgctct aaatttaaat aaagaatttg atatccaaat tttattagaa
     9001 aaactttcaa gtcattataa aagctttgat atgcaaattt taaaagattt tatttttgaa
     9061 agactttata ctttttatac ggtcaatgct tcttttgtaa aagcggtttt aagctcacaa
     9121 aatacagatc ttatccatat caatcaaagc gtaaatgctc ttatagaact tagcaaaaaa
     9181 gacaatttta atgaaaattt tgcaaccttt aaaagactgg ccaatatcgc cactaaaaat
     9241 cctcataaag ttgatgaaag tctttttgtt caagaagcag aaagcaaact ttacaaagct
     9301 tttcaagaaa aaactaaagc caactcttta caagaaaaac ttgaaaatct ttttgcgctc
     9361 aagcctttta tcgatgagtt ttttaatcaa gtgatgatta atgctgaaga tgaaaaactt
     9421 aaaaacaatc gccaagcttt agtttatgaa atttatgcgg agtttttaaa aatcgccgat
     9481 cttaaagagt taagcctatg aaagccttat ggattctttt aagccttact ctttggcttt
     9541 ttggagctca aaatttagaa ctcatcaaag gtcaagcttt atttttggaa ctagataaga
     9601 aaaatttttt atctttaaaa aataatgata aaaatattcc cacatttgcg catcctaaaa
     9661 atcaagaaaa aattctagct attttttccc taccttacaa aaatcccccg caaaacacca
     9721 agcttatcgc attttataaa gataaaaaag aagaaatttt cataaaaact ttagaaggta
     9781 attataaaag tgaaaaattg caagttgaaa acaaaaagat ttttccacca aaaaccgtac
     9841 aagaacgcat cgctaaagaa ttaaaagaag ccaatgcgat ttatagctct tatactccaa
     9901 aagctttatt taacggtgct tttaatatac ctttaaattc ttttatcaca agtgattttg
     9961 gcaaagcaag aacttttaat gaaaaagtag caagttatca tagcggaacg gactttagag
    10021 ccgctacagg aacacctatt tatgcagcca attcaggtat agtaaaaatc gcaaaagatc
    10081 gttattttgc aggaaattcg gtagtcattg atcatggctt tggaatttat tcacaatatt
    10141 atcatctttc taaaatcaat gttaaagtag gacaaaagat aaaaaaaggt gagcttatag
    10201 gacttagcgg agctagtggt agggtaagtg ggccgcattt gcattttgga attttagctg
    10261 gaggcaaaca agttgatcct ttggattttg tatccaaatt taatgctatt tttcaatgaa
    10321 atttagtgac tttttccatg cttggctaca tgaaagctat tataaaaatg ctgtaagtat
    10381 aggaaaaaat ggggattttt ttactgctgt tagcgtagga aatcttttta gcacactttt
    10441 agccaagcat tttttaaatt taatagataa aaaaatttta caaccccctt tagaacttgt
    10501 agaaataggt gctaatgaag gctatttaag tcgtgatttt ttagccgctt tacttgaatt
    10561 aaggcctgaa attttttctc aaatttcttt tttcgtcata gaaccacatg aaaaattaaa
    10621 aaatttacag aaaaagacct tagaaggagt ggaatttact cacaaaaata gtcttaaaga
    10681 atgccatttt aagaacgctt ttttcttttg caatgaactt tttgatagtt ttacttgtga
    10741 acttatagat catgataaaa tggcatttgt agaaaatttt aaacttattt ttaaaaatat
    10801 ggatgaaaat ttgatcacaa aatgcaaagc tttaaatctt acaaaaggcg aactcagttt
    10861 agagcttgaa aattttttta aagatttaga tcaagcttgc gagagattta tatttgcggg
    10921 atttgactat ggaactttga atccacaaaa ttttagctta agaatctatc aaaagcacga
    10981 agtttttagc ccttttgaag tatctttaaa agattttttc ggcaaaagtg atctaactta
    11041 taatgtcaat tttacccatc ttcaaaaact catcaaagaa tatgatttta aacctttagc
    11101 ttttaaaaaa caaagtcttg ctttaatgga ttttggtttt gaagatttat tagaatacac
    11161 aaaaaataaa aacattaaaa cttacgaaag ttttttatct caagctaaaa ttttattttt
    11221 taattttgat gaaaaatttc attttttcga atttcaaaaa aactaaaatt ttatattttt
    11281 catacttgct aaacaaactc cctcccttaa accctcatca atgactagaa gtttatgttt
    11341 atcaaacaaa gcataaaaca gcaaacaacc tgcactcaaa taattttttc tcatcatacc
    11401 tacttctttt atagcctttt tttcttccat atgaaaaagt ttaatagcat aatttaaaaa
    11461 atccttatgg caaagttttt taccatttac tctagttgct tcatactttt catagtttat
    11521 attttgtttt aatgcgctaa gcgtagtagg aactccggaa tttaaaacca ccgttttaac
    11581 tcctaaagaa cgaagttcct ttttaatcat agccacctca tcaaaagcca taaaagctaa
    11641 atgctttaaa tagggatttg caattaaaaa atgaatttta agttttttat ctttaatatt
    11701 gatgataaat ttaggatatt tttttatcaa ttttttataa gaaatacaag atttataata
    11761 agaatggcaa tttttttcat aaaaactaat aataccaaaa tcaaaacttt taaaactttt
    11821 tctaaaagaa agctcacaag aagcccctcc taaatcacaa tacgcaaact ctccccaaat
    11881 tttaagcctt cttaaacctg attgcatacc taaaacactg atcttagctt cacttttggc
    11941 atctataagc ttaaaatcaa tcccaaattc ttcttttaaa tgggcaaaaa tttcatttgt
    12001 attgcttgct tttctaaagg ctgcagtcgc tacagctctt gctttgctta aatcttgctc
    12061 tttagccaaa atactcaaag cattttttaa tctttgtatg gcttctttcg aaatttctcc
    12121 actttgattt agatttttcg ctgccccaat aacaaattca tattctttta atttatttaa
    12181 tttttcatcc atttgtactg ctcttaaagt atttgaacca agatctatac ctaacatgac
    12241 tttccttgtt tgattttata gtataatagc aaaaaagttc taaaggaaaa atatgctttt
    12301 aggtgtaaat atcgatcata tcgcagtgtt aagacaagct agaatggtaa atgatcctga
    12361 tcttttagag gctgctttta tagcagctaa acacggagat caaatcactt tgcatgtaag
    12421 agaagatcgc cgtcatgctc aggattttga cttggaaaat atcataaaat tttgcaaaag
    12481 ccctatcaat ttagaatgtg ctttaaatga tgaaatttta aatttagctc ttaaactcaa
    12541 accccaccgt gttactttag tgcctgaaaa aagagaagag cttactacag aagggggact
    12601 ttgtttaaat catactaaat taaaacaaag catagaaaaa cttcaaaatg caaacattga
    12661 agtttcactt tttatcaatc ctagtttaga agatatagaa aaatcaaaaa atttaaaagc
    12721 ccaattcata gagcttcata caggacatta tgcgaattta cacaacgcac tttttagtaa
    12781 tatctctcat actgcttttg ccttaaaaga acttggtcaa gataaaaaaa acctacaagc
    12841 tcaatttgaa aaagaattac aaaatttaga actctgtgcc aaaaaaggca cagaacttgg
    12901 tttaaaagta gctgcaggac atggtttaaa ttacaaaaat gtaaaacccg tagtaaaaat
    12961 taaagaaatt tgtgagctaa atataggaca aagcattgta gcaagatctg tatttacagg
    13021 acttcaaaac gctattttag aaatgaaaga acttattaaa agatgaaaaa actagccatt
    13081 agcataggcg atataaacgg cataggactt gaaattttag tgcgttctca tgaagaacta
    13141 agcaaaatct gcacaccttt ttattttatc cacgaaaact tgcttaataa agcttcaaaa
    13201 cttttaaatt taaaactttt taatgcaaaa attgtagctt ttaaagatga caaagactat
    13261 gagtttaatt ttataaaaaa agaaaattct cttgaaattt actctttttg ccttccttta
    13321 ggctttaaag tggatgaaaa ttttgaaatc aaagccggag aaatagatgc aaaaagcgga
    13381 ctttatggtt ttttaagctt taaggcggca agttattttg tctatgaaaa acacgcacat
    13441 gccttactta ctctacctat acacaaaaaa gcttgggaag atgcaggact taaatacaaa
    13501 ggacacaccg atgctttaag ggattttttt aaaaaaaatg ccattatgat gttaggttgt
    13561 aaagaacttt ttgtagggct ttttagcgaa catatacctt tagctaaggt gagcaaaaaa
    13621 atcactttta aaaatttaag tatcttttta aaagattttt acaaagaaac gcattttaaa
    13681 aaaataggac ttttaggttt taatcctcac gctggagatt atggagttat aggtggagaa
    13741 gaagaaaaaa tcatggaaaa agctatagcc tttgtcaatg cctttttaca ctctaaaaaa
    13801 gatgaaaaat ttttcaaaaa agccttaaaa gatgaaaatt tacagaaaga attgctttta
    13861 aattttaaag gcaagggcgt ttatctaccc tatcctttag tagctgatac agcttttacc
    13921 aaggctggtt taaaaaactg caatcgttta gtggctatgt atcacgatct tgcccttgct
    13981 cctttaaagg ccttgtattt tgataaaagc atcaatgtga gtttaaattt acccatcata
    14041 cgcgtcagtg ttgatcatgg cacggccttt gacaaggcct ataaaaatgc taaaatcaac
    14101 actaaaagtt attttgaagc ggctaaattt gcaatcaatt taagccttaa aacttaaatt
    14161 tagccctaga atcaatcaaa tcttctttag ccaagctgtc tataaaatct tgcaaatctt
    14221 tattggtatt taaactttga gtgagtaaat tttcatattt atcaacttta tttttaaaaa
    14281 tttgctctaa aacttcttta gtttttgtat ctttttttgc tctttgcata agttctaata
    14341 aagccttaat ataagcttct tgcatgcaat cacttgcatt gagtaaaggc aaaataggat
    14401 tttcccctgc ttttgtattt tgcatatttt ttatacaaat ttttctttct ttaagcatct
    14461 tttttgaaat ggctttaaaa tcttttttca tctttttatc tgcttttttt gaaatatttt
    14521 gatacaaact actatagata ttatctgcta aagcaagttt tttattctca aattcattgc
    14581 gcacgccaat ttcattacat atcataagct catcatcact tttgccatca tctttcacct
    14641 tagaacaatc aaaactaggt tttacctcat ctttataaat aagctcatca aaactcaaag
    14701 cctctaaact cgccaaactt aaaccaaata aaaaaataat ttttttcatt tttactcctt
    14761 taaaattttt attttatttt aacaaaaata ttttgaattt tttaaggaaa ttaagccttt
    14821 attttattat aatgagtttt tattttttat aaggaaatta aaatgcaaaa ttacaaaaaa
    14881 gctctttttg cactagctct tagtgctttt tgtatgggtg taaccgaatt tgtcatggca
    14941 ggagttttga ttgatgttga agcgtatttt agcgtagatg caaaaaccgc aggatatctt
    15001 acaactttat atgccatagg tgttgttata ggtgctcctc ttatcaccat acctttaagt
    15061 cattttcata gacatacaca acttttaatc aatcttggaa tttttgcttt agcaaatttc
    15121 atcatctttt ttagccaaaa tttctatctt acagcatttg cgcgttttat agcaggaaca
    15181 cagcatgggg tgttttttgt cattgctacc ttagctgtaa gtgctatagt acctaatgat
    15241 aaaaaatcaa gtgctctagc tataatggtc acaggactta ccgtagcctt agttactgga
    15301 gtaccacttg gaacttttat aggacattat tttggcttta aatttatctt tttacttatt
    15361 tttatcatta caagcctagc attttttgga gtatggcata tgatgcccaa aaatttacat
    15421 cctagtccaa caagtcttaa aaatctaatc cctgcttttt cgcatcaaaa tttgttaaaa
    15481 acttatacta taaccatttg tagttgtggg gctcaattcg ttctttacac ttatttgcaa
    15541 aaattacttg tagaaataag cggttttaaa gtccaagata cagcttatat cttgctttta
    15601 tatggaattt gcgcaatttg cgggaattta tggggcggaa aaatagtaga taaaaagggt
    15661 gctatttttt ccctgcgtct tattttaagc atacaagttc tagtattctt aagcgtattt
    15721 ctcaccatgc attctaaaat tttaatcatt tttagcgtag ctttgatagg attttttgcc
    15781 ttttcaacca tacctgcgct aaaaatgctt agcattgcta aagctaaacg ccacacttat
    15841 aaagtcatag acagcacagt aagtgtgaat gaagcagctt ttaatgtagg catagcttta
    15901 gcaagttttt taggtgggat tgttttagcg ggattgggta tagaatttaa tgctttattt
    15961 tcggcacttt ttgtaagccc tgctttgatt tttgccttac tttttgccaa agataaatta
    16021 aattataaaa aatttcaaag aaaaagttta aaaaagatat aaattggaat agaaattgct
    16081 tgtttattta atgtaaagtt aaataaagga ggagaaaatg gtagtagata atactcaaaa
    16141 aacatcaaat gctattttta gcaccacaac aaaggttaaa gagaaaaata cttcagcaga
    16201 tgaatttcaa gccacattaa atgaagtaaa aaacaaagaa gaaaaggaag aagaaaaaac
    16261 aagctcaagc aaatttacta atgaagacat tgatcttggt gctgttagag aagattttag
    16321 atcttatgct tggcaaaaaa tgagagaaga tcaatacaaa aaaaatgagg agactttgct
    16381 aaataagctt tttgctacaa ttgacgcagg aaatgccaca aacaatacaa aggcttaata
    16441 tacaaatcaa aactcaaact acacaaacga gaattccaat aattctcgta aaatttctca
    16501 taactctgga taaaatgaaa aaatttatta tttcctccat atgaagaaaa tatagaaaaa
    16561 ttgaccaatt taatttatca aattctgtta taattttgct aaaaacaaag gaaaataatg
    16621 atttttattg atgcttgctt taaaaaacct acaccctaca cccctatttg gatgatgcgt
    16681 caagcaggaa gatatttgcc agaatatatg gaagtaagaa aacaagcggg tgattttctc
    16741 tctttatgta aagactataa aaaagcttct gaagtttctt tacagcctat tgatatttta
    16801 gatgtagatg cagcaatcat tttttcagat atcttagttg ttcctcttga aatgggtatg
    16861 aatttacgtt ttgaaaaagg agaagggcct gtttttgata atcctatttc aaccctagaa
    16921 gacttagaaa aacttgacga tcaaaatgca cataaaaaat taaattatgt ctatgatgcc
    16981 ttaaagctta ctagagaaaa attatctcaa aacaaggctt taataggatt ttgcggaagc
    17041 ccttggacta tagctaccta tatgatagaa ggaagtggaa gtaaaaatta tgcaaagtgt
    17101 aaaaaaatgc tttatcaaaa cccagaactt ttacataaaa ttctaaacaa actaactcaa
    17161 gttttaaaac tttatttaga agagcaaatt aaagcaggtg ctaatgctat acaaattttt
    17221 gatagctggg caagtgcttt agaatacgat aagttttttg aattctcttt taattatatg
    17281 cttgaaattt caaattttat taaaagcaaa tacccaaata tacctgtaat tttattccct
    17341 aaaggcatta gtggttattt ggatagaatc gatggtaatt ttgatgtttt tggggttgat
    17401 tggagcactc cgcttgattt agcacgtgat aaactatcac acaaatacac tcttcaaggc
    17461 aacatggagc cttgcagact ttatgataaa aatgccatca aagaaggagt ggaaaaaata
    17521 ctaaaaacca tgcaaaataa agctcatatt ttcaacttag gacatgggat cttgcctgat
    17581 attcctgttg aaaatgcaaa atattttatc aagcttgtac aagaaagttc agctaaatga
    17641 aaatactctt tggtcctgtt agctcaaggc gttttggaag atctttgggt atagatttaa
    17701 gccctagcaa aaaacaatgc aattttgatt gtgtttattg tgagcttgat ccaaaaaaag
    17761 cccaagaaaa acaggatgaa attatcagca tagataaaat tatctccgaa gttaaagttg
    17821 tgcttgaaaa aaatgttgaa tttgattttc ttacccttac tgctaacgga gagcctagtc
    17881 tttatcctca tttaaatgag cttattttat ctttacgcag cattgctaaa gataaaaaat
    17941 tgcttatttt aagcaatggc acagctgtat tagacgaaga caaatttaat gctttgctaa
    18001 aactagatgt ggtcaaattt agcctagata gtgcagttgc taaaactttt tatcgtattg
    18061 atagagcttt aaaaaacata gatttagaaa aaatgataga aaaaatggca gattttagag
    18121 ctagatttaa cggagatttg attatggaaa ttctagttgt taaagatctt aatgacaacg
    18181 aagaagaatt tgaagcactt aatcaagctt taaaaaaaat catgccttta agggttgatc
    18241 taagcaccat agatagacct cctgcttatg ccgttaaaaa agtaagcgaa gaaaaacttt
    18301 tagaactttc taaacttata gattctactc ctgtactctt agccaaaaga cattatgaag
    18361 gtgaaaaact aagcttcaat gaagaagaat tattaaaaat gcttcatttg cgctcacaaa
    18421 gcgaaataga cattgaagtg aaatttgatg aacaatccaa aactctctta aatcaactta
    18481 tcaaagaaaa aaaggtaaaa attctcgatt tagctggagt taaattttat aaagcttagg
    18541 cctttggtaa atactttcta agtaaagtta taagatcatt tctacttaca tcacttaaaa
    18601 cttcgctcac acaatcaaaa tccccaactt tttcctttga aaaaaagatg atatggcttt
    18661 gtggatgctg ttttttataa gcacttaaca aatttctcat ttgctcaaga tcaaatttaa
    18721 ttaattcata atcaagcaaa atcaaacgat aagtctcctt gcttaattct tgttttaatt
    18781 gactaaaaga atttatacat acatttttat cgcattgttt ttctattata ttaaaaaata
    18841 aggttgcatc aaaatcattt tgtttaaaaa gcaatacatt attttgataa ggggttttaa
    18901 attttaaagt gcaaacctta tcaagcttgt tttgcaaaat attttcaaga tctttttttt
    18961 caaaaggtaa agttaaaaaa tactcataat gtgtattttt atggcgaccc atcactataa
    19021 aatcatagtt tttctttaca ttttcattta aaattttatc cttgataaaa atcaaatgaa
    19081 agtcattaac atcaaaactt aaatttttaa aacaagtgct ttctatgcca aaatacgaaa
    19141 gtaaatttgc aagtaaaaaa ttctcaagct catcattatt aactatagcc acacttgctt
    19201 caaattgcaa aacctttcca tgagatgtcc ctataatgct tttatgatgc tctaaagcct
    19261 catttaattc taatctaatt tgatcttttt gagaatttaa ggcatttaaa atcaaagaat
    19321 taatttcttt attataccct tcatttaagc aacgcattgc attggatata tttccaagct
    19381 gatataaatt ttcctccaat aaatgcaaat atctatcttt ttcatgggat gttttagtta
    19441 aattttgacc cgtagtttca aatttttcct ttaacaaatc aagcacgcta tcaacatcaa
    19501 tctttttttg aaaatttaaa aaatcatttt gcatgtaaaa aattttttga tatattttgt
    19561 ttatatttct attttgtcta aaagcaaaaa taaaaagtgt taaagataaa acaaaaatgc
    19621 tagaaaacat acctattttc agttgttcag caacactatc aagctttgag atatcaatac
    19681 ttaaatacgc taaaattaga ttaaaaataa aaattatccc tgctaatatc aaatcaattt
    19741 tcctttatct tttgtgccac tttcttgcct acaagcattg caagatcttt aaaatcagcc
    19801 ttatatatag attcaaaatt tccataatac gctaaaagtt tttgtataac ccctgaacta
    19861 agtcctaaat ttacaagctt agaactattc aagtcctgtt ttttcttagt attttgatga
    19921 aagctgatag caaaacgatg cgcttcatct cttaatttct gtaagaattg tagtttttta
    19981 tcgttaatac ttaggctaaa ttctcctttt aaggaatgaa ttttatctct agcacctcct
    20041 ttagccctat gtgcttttgc atcgattttt tcttttgaaa tagctaaaat atcgacattt
    20101 gccccactac ttacaatgat ttctttagcc aaatcaagca aagccttgcc tccatctata
    20161 agccataaat caggaggggg tattttatca aagtccaaag ccctacgcat taaaacttca
    20221 cgcatttgat cataatcatt tttatgtttt aaatgaaatt tgcgatattt tgacttatcc
    20281 caagaatttg cactataagt taccatagct ccaacatttg ccacgccttg caaatgagaa
    20341 ttatcaaaaa tttctatatc atttggtaaa ttttcaagct caaaataaga ctttaattct
    20401 ttttgtatag taaaatcatg atttttttgc tctttttcta tatttaaaag ggcattttga
    20461 aaagccaaat cacaaattct tcttttttct cctattttag ggattttaat actgattttt
    20521 ttatcaaacc tttggcttaa aatttcttct aaaagcattc tatcttcaaa ttcttcataa
    20581 acataaataa catttgcaag caaaggaata tccatgctaa aattttctaa aatcagttgc
    20641 t
//
LOCUS       DAEDTT010000015        19737 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.015, whole genome shotgun sequence.
ACCESSION   DAEDTT010000015 DAEDTT010000000
VERSION     DAEDTT010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19737
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.015"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(60..746)
                     /locus_tag="KLC54_000443"
     CDS             complement(60..746)
                     /locus_tag="KLC54_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD9176847.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFDFKFKRFIKLIIDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            825..1634
                     /locus_tag="KLC54_000444"
     CDS             825..1634
                     /locus_tag="KLC54_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HBD9176848.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGNPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            1776..2543
                     /locus_tag="KLC54_000445"
     CDS             1776..2543
                     /locus_tag="KLC54_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HBD9176849.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDKTLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNIKALEFVKKIKENLEKEQIQICALENFI"
     gene            2553..3293
                     /gene="pxpB"
                     /locus_tag="KLC54_000446"
     CDS             2553..3293
                     /gene="pxpB"
                     /locus_tag="KLC54_000446"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HBD9176850.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSAYASLLIYFNPCILSLNSLLDFLEKIKKDIKLAEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFDIQEQVAKKVYQKEIYEYKNH"
     gene            3274..4239
                     /locus_tag="KLC54_000447"
     CDS             3274..4239
                     /locus_tag="KLC54_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HBD9176851.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGVELCLKGGKYEFLDGNYFVLSGAEFEAKLNNQKIKTYKVYKANKGDILE
                     LGLAKIGFRGYLCVAGGFEIKSFLNSKSSDAKMGVGFFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSHKEPIIRVILGTNEDAFTQKGIDTFLNTSYKVGSKSDRMAIYAE
                     SSKSIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIGTVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(4236..5132)
                     /locus_tag="KLC54_000448"
     CDS             complement(4236..5132)
                     /locus_tag="KLC54_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HBD9176852.1"
                     /translation="MTRTKYLYILLVLAMFLWGSSWPTSKILSAYADTSVITFWRFFF
                     VLLGSLMVLGFLRIPLSLEKSILKWVLIAGILNGLYTFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAILFQKDKKSTHKIIKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALIAVFNHKAKGVHPLAINFYINLISVLMFSWVLFDVKSYEIFHFEFK
                     FWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(5165..5743)
                     /locus_tag="KLC54_000449"
     CDS             complement(5165..5743)
                     /locus_tag="KLC54_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HBD9176853.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQRYDPKEEIQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            5843..6184
                     /locus_tag="KLC54_000450"
     CDS             5843..6184
                     /locus_tag="KLC54_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002921808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HBD9176854.1"
                     /translation="MTKENSQCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMCK
                     WGEKDKKEKNA"
     gene            6177..6626
                     /locus_tag="KLC54_000451"
     CDS             6177..6626
                     /locus_tag="KLC54_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HBD9176855.1"
                     /translation="MLELIGELSLQNYMGEWLEMARKPAFFQKSCLNSKAKYELKYKN
                     GVPYVEIENFCSKENEISSIKGKAKIVSNRQLAVRFNIFMNLFNKVNYEIIFIDSEYK
                     VAIVGSPDKKYLWILARNIIDEKSIKELLDIAKQRGFSVSDVIFDKY"
     gene            complement(6628..7704)
                     /locus_tag="KLC54_000452"
     CDS             complement(6628..7704)
                     /locus_tag="KLC54_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HBD9176856.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAICVPKNA
                     PMHKVAPLLCAGITTYSPLKFSKIKEGSSVAIAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSTDKNAVKERFDLIISTIPTPYNPAIYLDLLKFGGEMAIV
                     GLPPVEDKVNIGINELVHKAGKKVYGSLIGGIAETQEMLDFSLKHEIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            7835..10144
                     /locus_tag="KLC54_000453"
     CDS             7835..10144
                     /locus_tag="KLC54_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HBD9176857.1"
                     /translation="MQNLYSEDDTRVKFIDAKLYDSSWNEENIKRNYYFTDGRKLLGG
                     KRAQRKFADYLLRYEGNNLAIIEAKKFSKDPLDGLSQGIEYAKILNVPFVYSSNGEKI
                     YEYDIRSHSGKYIDKFPSPKELFDRIYGNVKEWQYRLLTQNVMYIPQKELRYYQKIAI
                     DKVIEAIINNKNRILLTLATGTGKTTIAFNLCYRLLEARWNKENKDQKPKILFLCDRV
                     SLRDQALGEFNPIESDCKAISAEEIKKNDGKIITNANVFFGIYQSLAANSKEQENTQE
                     EQESKFYLQYPKDFFDLIIIDECHRGGANEEGSWRAVLEYFSYATQLGLTATPKKEEN
                     IDTYEYFGESVYDYSLKSGIEDGFLTPYKVKLIKTTLSDGYTYNPDDLIQGELEKGFY
                     KQSEFERNIFLPNYNDFIAKKILELINPMDKTIIFCANQAHANEVKRAIDKYKSVKRD
                     DYCVRVTSDEGKIGLDYLKQFQDNDKSFPVILTSSKMLTTGVDAKNVRNIVLLANIGS
                     MVEFKQIIGRGTRVYEGKDFFTILDFVGATKLFYDPKWDGEKIKELKEQNKQEKITKE
                     QIKQTKEESKEKKSVTIHLKGTKLKVLDITTSYVGAQGKPLSTKEFLEFLIGKLGEYY
                     DDEAKLREIWSDQKNRERFLKALANDGVDEDALKDLRKIFQKDCDIYDVLAHLSFNAE
                     IKTRQERVLQVENGEFLKRFQKEKAIKFIEFLLNRYQEYGIKDFDDGLKPLIELSSLG
                     NVRELADEFGGLEILKQSFDDLQREIYAR"
     gene            10234..11556
                     /locus_tag="KLC54_000454"
     CDS             10234..11556
                     /locus_tag="KLC54_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD9176858.1"
                     /translation="MLIEFRVENFLSIQDEQILSMMASKDNTFFDSHTNGDKKLALLK
                     SSVIYGANASGKSNIVKALQTMKTIVISSANTQRGDKLPITPFLLGDEDDKPTKFEII
                     FIQNDTKYQYGFILNSEKILEEWLLTFDENNTEQNWFERIYNKKEGRYNYSFGDQFLA
                     DEIYKQLWENSTRDNALFLSVAIQLNNEQLKPVFDFFNLKLQIANSNGWGNGKSITIN
                     EYKKDKELVNSFFKIADLDIEGVEIKTSDIDENSLPSNLQNIPQELKEKIIQEVKNIQ
                     NLKNVKILEDISFIHLSQKNQIKFLNFNDESDGTRKFFNIAGIWIDSLKKGNILIIDE
                     LNTHLHPLMTKFLVNLFHNEDLNKSNAQLIFTTHDTSILNQDIFRRDQIWFCEKQNKA
                     TKLYPLSDFEESEERRDKTNLENDYLLGRFGALPYFKEILSSWSDNGN"
     gene            11546..12178
                     /locus_tag="KLC54_000455"
     CDS             11546..12178
                     /locus_tag="KLC54_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RloB domain-containing protein"
                     /protein_id="HBD9176859.1"
                     /translation="MGTDDLRKKRNTKTRDREAKRKKNEIILIVCEGEKTEKNYLNQL
                     KDFFRLSNVSINIISSKKPNPSQIVEFTKEKNKDYSYNKVYCVFDKDTHSDFDKARQE
                     CEKYKFEAITSNPCFEFWILLHFTYTTKSFSTNSPCNELIESDLKKHIKDYKKDYNFT
                     SIIKQNLSTAIANAQKANKEAEKNNYTSSYTFMDKLALKFQELNSARINQ"
     gene            12175..13386
                     /locus_tag="KLC54_000456"
     CDS             12175..13386
                     /locus_tag="KLC54_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HBD9176860.1"
                     /translation="MTNLPQGWEVKTLSEIGEIVTGSTPSKSNLDFYGKDYPFFKPSD
                     FEQGYFLENAGDNLSKLGFGKARQLPPKTILVVCIGSLGKVALTKVIGSCNQQINAII
                     PHKNIISEYIYYYCISSKFQSILFSKAPQTTLAILNKTEFSKLEIIYPKDIKEQERIV
                     GILDFAFSKIDENIKKAKENLANIDELMQSALQKAFNPLNDNTKENYQLPQSWEWKSL
                     GDTSNYGKTSQVKPSQLKGNDWILELEDIEKESGVLLQKVLFQDRQSKSNKIKFNKGD
                     ILFGTLRPYLKKVIIADDNGACSSEIMPFSTGNSITNHFIYYYLFANFLHDRISSLTY
                     GARMPRLGTKDGKSLQIPLPPLQEQEQIAEHLDFVFEKAKALKELYTKELKDYEELKQ
                     SLLDKAFKGEL"
     gene            13531..15021
                     /locus_tag="KLC54_000457"
     CDS             13531..15021
                     /locus_tag="KLC54_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HBD9176861.1"
                     /translation="MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNL
                     KDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKN
                     FKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISFNKEDEVFALGEVYEK
                     LLKDMGSDGGNSGEFYTPRPLIKAMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYK
                     DRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK
                     KITDITEQEKYEVILANPPFGGKEKEQIQENFPIKSNATELLFLQHILRSLKNNGRCA
                     IIVPEGVLFQNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGLNS
                     ILKANDDKVYYYELIPPYKLTKNKPLEYAHFNEFLKYYKERKITANSWLVSKKELEER
                     NYDLSAKNPNVKEEKILRTSEEILNSLEENLKTQQEYLNELKSILK"
     gene            complement(15099..15854)
                     /locus_tag="KLC54_000458"
     CDS             complement(15099..15854)
                     /locus_tag="KLC54_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HBD9176862.1"
                     /translation="MQLRQKAREIFEKLLGGAKKDQLFASDKEFFTNHINFTFGESFV
                     KANLDTQKYFLITLASTLAVGGKIEFKALLQGAIKNDISPIVIKEVIYQATPYVGFAR
                     VCDFLSLCNKVFKKLNIALVLTPQGTTTQENRKIKGREIQNAIFSEANITKMIETTPE
                     DKAFINDFLSANCFGDYYTRMGLDLKTRELLTLVYLISLGGLDNQVKAHIQGNLNMGQ
                     SRKDLLNIIAALIPYIGYPKALNALNLFDDIKK"
     gene            complement(15961..16380)
                     /locus_tag="KLC54_000459"
     CDS             complement(15961..16380)
                     /locus_tag="KLC54_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HBD9176863.1"
                     /translation="MQELEKAGIHGSFKGDSKFFSKNVKVSMMFKSNEWRNFSGALVE
                     FEASARSAWHTHPQGQTLIVTEGEIITKVPGQKAFIAKKGDVISCPIGVKHFHGATNT
                     SSGVHIALTGEKEGKNVEWLELVSDEEYENALKEARE"
     gene            complement(16438..17613)
                     /locus_tag="KLC54_000460"
     CDS             complement(16438..17613)
                     /locus_tag="KLC54_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD9176864.1"
                     /translation="MKNLNKASNAQIILVFCLGVFGILSTELGMMGIIPIVSQNFSVS
                     ISDAGWCVSIFALVITFCAPIVPLLCANFNPKKLMLICLAVFILSSLTSAFVGEFWQL
                     LILRAIPAFFHPIYIALALSMVTNLVEDKKEIPKATAKIFAAVSAGMVLGVPMTSYFG
                     GNFSFKMAMLFFVFLNTLSFIATLFFVPDFKKVNSVKISKQLLILRYPLLWISILCVI
                     CINAGIWGFYSYFSDFLHSVGKMNFTLISIVLAIYGFSNIIGNYIAGKTLVKNANFTL
                     ILTPLIMIGFYILLFSFYSEIILIIFAFILGILAGVMNNGTHFMISYPFPKAANFSNG
                     LFISVANIGLSTGTAICGLVISLSDTRYIIVNTIVLLILGIIMIFVRSRIEKMKLRF"
     gene            complement(17789..17884)
                     /locus_tag="KLC54_000461"
                     /pseudo
     CDS             complement(17789..17884)
                     /locus_tag="KLC54_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
     gene            17988..18311
                     /locus_tag="KLC54_000462"
     CDS             17988..18311
                     /locus_tag="KLC54_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HBD9176865.1"
                     /translation="MQKFLTIISAINNESRILILYHLLRYKELCVCDLQELLNMGQSR
                     LSRHLKILKDAGFLYVRRQGTWAYYGINNELLKLHLDLFENIKNLELKNAIKKNENII
                     TQICP"
     gene            complement(18319..18750)
                     /locus_tag="KLC54_000463"
     CDS             complement(18319..18750)
                     /locus_tag="KLC54_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HBD9176866.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWAKWIEWLRISGMPIEQVKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKLHKFKG"
     gene            18829..>19737
                     /locus_tag="KLC54_000464"
     CDS             18829..>19737
                     /locus_tag="KLC54_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HBD9176867.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLHESALKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDITNLPYQSLITEENIINNVG
                     PILKYYRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTNLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKTHGDYNFFTYGLDGKERLGTCTKVFAYTACI
                     TESADIINKPIHKAAFIQAIVVIIVVV"
BASE COUNT         7506 a         2821 c         3079 g         6331 t
ORIGIN      
        1 tgatttttaa aacttctttg ttttgatagt tgaaaaaaag attagaaatt tctatcattt
       61 tatgttcttt tgagtttgtg tgtgatgaaa tttaaacaaa aggcaatgag aattaaaacc
      121 aaagccaaag ctataccgct agcaaattcg cctttgttgg tttcaagtga aatagctgtg
      181 gttatggttc tagtgtcgta tttgatattt ccacctacta tcatcgctac tcctacttct
      241 gctacaatgc gtccataagc tagtgcaacg acgctaatca aagcaaagcg taattcataa
      301 atcatggtta aaacaagttt taaaggactt agatgaaaag attttataag taaaaaatgt
      361 tttttattca tattttctat caaatttgaa aaaagcgcaa tcactatagg aagcgctaaa
      421 ataaactgcc ctaaaattaa agcctttata gtaaaaagta gtccaaattc ccctaaaggt
      481 cctcgacttg aaatcaatgc ataaagtata agccctactg caactgttgg aaaagagagg
      541 ctagtatcta tgataagttt tataaagcgt ttgaatttaa aatcaaaaaa gcctaagata
      601 aatcccaaag gaaaacctat aagcaaagcc aaaactatag aaatacttga gcttaaaagt
      661 gtagttttta tagccgaaat tacgctttca tcggcattga aaagtaaaaa taaagcttgt
      721 ttaaaaccat caaaaatata atccaaaaat atccttttta aaataagtaa ttttagcata
      781 attatgctaa aatatttttt tatgtaaatt tataaggaga aaaaatgaaa aaaatcattt
      841 ctttagccct tgctttagct ttaagtgcaa gtgcagcaga acttaaaatg gcaaccacaa
      901 caagcactga caatacagga cttttagatg ccctaaagcc tctttatgaa aaagaaagtg
      961 gcaatacctt aaaatgggtt gcggtaggaa caggtgcagc tttaaaaatg ggtgaagatt
     1021 gcaatgctga tgtgcttttt gtgcattctc caaaggctga aaaagaattt atgaaaaaag
     1081 gttttggtgt agatagaact cctgtgatgt ataatgattt tatcatcatc gcagataaat
     1141 ctttagcttc taaatttaaa ggtaaaaatt taaaagaaag cttagaactt atcaaaaatg
     1201 aaaaactcac tttcatctca agaggtgata aatcaggcac tgataataaa gaaaaaagtc
     1261 tttggaaaaa tcttggcggt gttcctgaaa aacaaagctg gtatcaacaa agcggacaag
     1321 gcatgttagc aagcattaaa atcgctgaag aaaaaaaagg tgtgatttta accgatcgtg
     1381 gtacctatat caaatatgaa gccaatgaaa aaggaaatcc aaacttagtc attgtaaatg
     1441 aaggcgatga tagtcttaaa aatttctatt ctgttatagc aacaaatcct aagcattgta
     1501 aaaatgtaaa ttatacagaa gctagcaaat ttattaaatg ggtaacaagt gataagactt
     1561 taaattttat tgctgatttt aaacttctta ataaaccttt atttgtgatt gatgcaaaaa
     1621 cgagaaaaga ctaaaaatta agcaggtttt aacctgctta aaatatcatt ttttacttat
     1681 tgtaactttt ttatttattt ttcaaaactt ttagcttatt taaaattctt ctttagatat
     1741 aataaaatca ataattaaat atacaaggtc aaataatgtt caaagtggat ttaaatagtg
     1801 atttagggga aagttttggc gcctataaaa tgggaatgga tgaagaaatt ttaaaatttg
     1861 taagctcagt aaatgtcgct tgtggctttc atgcgggtga tccttgtgtc atggataaaa
     1921 ccttaaattt agccaagcaa aatggtgttt gcataggagc acacccatct tatcctgatc
     1981 ttttgggttt tggaagacgc aatatgcaaa taagctttga agaggctaaa aactatgcct
     2041 tgtatcaact aggagcttta tttggctttg ccaaggcaaa aggtatgaaa atacagcatt
     2101 ttaaagccca tggtgcactt tataatatgg cagctattga tgaaaattta gccttagcac
     2161 tttgtgaggc agtggcgagt tttgatgaaa atattatttt tctagggctt agtaattctg
     2221 ctatgaatga agcggctaag aaaaaaggtt taagatatgc taatgaagtt tttgcagatc
     2281 gtgcttataa tgatgatggc actttagttt caagaaaatt agaaggggca ttaatacacg
     2341 atgaaaattt agctatcaaa cgcgtgataa aaatgataaa agaaagcaaa gttacaagca
     2401 taaatggcaa agaaattgat ttgaaagccg atagtatttg tgttcatggg gataatataa
     2461 aagctttaga atttgttaaa aaaatcaaag aaaatttaga aaaagaacaa attcaaattt
     2521 gtgctttgga aaattttata taggttttag caatgtttag tgtgcatttt agcggaagca
     2581 aggctttgct tttacgtttt gagcaagaaa tttcacctca aatcaatgct tatgttttaa
     2641 gtacagaaca aaggatacaa aaagccctaa aagaaggtga aatttatggt attgatgagt
     2701 tagtaagtgc ttatgcaagc ttgcttatat attttaatcc ttgtatactt tctttaaatt
     2761 ccttgcttga ttttttggaa aaaattaaaa aggatattaa acttgcagaa caaaactcaa
     2821 gtctttgtat agaagttcca ctttgttatg atgaagaatt tggactggat ttagaatttg
     2881 tgtgcaaaca caatcaaatt tcaaaagaag agcttatatc tcttcacact aagccttatt
     2941 atcttgtttt tatgctaggt tttatggcag gttttcctta tcttggaggt ttagatgaaa
     3001 ggctttttac cccacgcctt tcaagcccta gagcaaaaat agaagctgga agtgtaggca
     3061 tagccgataa acaaacagga gtttatccta tatcaagccc agggggttgg caaatcattg
     3121 ctagaacacc tttggaattt tttgataaag aagatgaaaa aaatcctact cttttaaaag
     3181 cgggtatgtt tttaaaattt aaagctattt caaaagatga atttttcgat atccaagagc
     3241 aagttgctaa aaaagtctat caaaaggaaa tttatgagta taaaaatcat tgaagcatct
     3301 ataaattcaa gtttgcaaga ctttggtaga aaaaaatttg ctaaatttgg catagcaaga
     3361 agtggggcta tggatgaaga tgctttaaga atggcaaata tcttacttgg aaacaaacaa
     3421 gatgaagcag gagttgaact ttgtttaaaa ggtggaaaat acgaattttt agatgggaat
     3481 tattttgttt taagtggggc tgaatttgag gcaaagctta ataatcaaaa aatcaaaact
     3541 tacaaggtgt ataaagcaaa taaaggcgat attttagagc ttggtttagc aaaaataggt
     3601 tttcgtggat atttatgcgt agcaggtggc tttgaaataa aaagcttttt aaactctaaa
     3661 tccagcgatg ctaaaatggg agttggattt tttgaaggaa gagctttgca aaaagatgat
     3721 attttaaata ctcataatac ttttatacct tttaatttag aagctagaga atgtgaaaat
     3781 cctcttttta aaagccataa agagcctatt atacgcgtta ttttaggaac aaatgaagat
     3841 gcttttactc aaaaaggcat agatactttt ttaaatacta gctataaagt aggttcaaaa
     3901 agcgatagaa tggcaattta tgcagaatct agcaaaagta tagagcataa aaactcagca
     3961 gatatcatct cagatcctgc agtttttgga agcatacaag taccaaaaag tggtattcct
     4021 atcattttaa tggcaggaag acaaagcaca ggaggttata caaaaatagg cacggttata
     4081 gaaaatgatc taagcttact cgcacaagct aagttaggtt ctagctttaa atttcaaagc
     4141 attagcatgc aagaagcctt agagctttat aaacaaagag aaatgaaatt taaagccatg
     4201 gatcaaaaaa tcaatcttga ttttgaaaat ttaatctaag cttttttacc ataaatattg
     4261 ataaaatata tagcacctat agccaaggca caacctaaca aggtaagtgc atttggcacc
     4321 tcatctagta taaaataact acaaattaaa gcactagcag gagtgattaa aacaaaagaa
     4381 tttgccttaa cgctccctaa aatgtgaatc ccataataat aaatactagt acctataata
     4441 gttgataaaa aagcaacgac aaacatactg atccaaaatt taaattcaaa atgaaaaatt
     4501 tcataacttt ttacatcaaa caatacccaa gaaaacatta aaacagaaat gagattaata
     4561 taaaagttaa tcgccaaagg gtgaactcct ttggctttat gattaaacac tgctatcaaa
     4621 gcccaaataa aagaacaagt taaaaataaa atattaaatt tgccaaataa atcttctaaa
     4681 ctccctaaat ttaacaaaca aaatccagat aataaaccta aaaataagcc tagaatttca
     4741 ctctttatga tcttgtgagt tgatttttta tctttttgaa ataatatcgc tatcataaat
     4801 atcaaataag aaaaaatagg aatcatagtt gtaaccaaaa caccgccttt tccagctaaa
     4861 ccatgcttaa tggcaataaa aaatacaaaa gtataaagcc catttaaaat tcctgctatc
     4921 agcacccatt ttaaaatgga tttttcaagg cttaaaggaa ttcttaaaaa gcccaatacc
     4981 atcaaagaac ctagcaaaac aaagaaaaaa cgccaaaaag taatcacaga agtatcagca
     5041 taagctgata aaatcttaga agtaggccaa gatgagcccc ataaaaacat agctaaaaca
     5101 agcaagatat acaaatactt tgttcgagtc aatgttacac cttgaaattt ttaagtcaaa
     5161 ttttttaaaa aatttttttc aagtgtagtt catactcgtt tagatatttt tccacttgag
     5221 gattttttac cacatcatta cacataaaag ttggtaaagc tttcatacct ataaattcat
     5281 gagccttatg caaatgccaa tacaccatat ccacaccctt tccttcaaaa aattcatttt
     5341 tatcattaaa ggcttcaaga ggtgcattcc aagtgagaga aaacatgtat tttttaccat
     5401 gatctaaacc accttttcca tagtttttac taggattttc atgagttctt ccatcatttt
     5461 taaaaagcac tccagcaccc aaaccaaaca cttcatcgat atatttttta actatccaag
     5521 gctcgcccat ccaccaagct ggcatttgat agatcacagc atcagctttt ataaattttt
     5581 gtatctcttc tttaggatca tatctttgat ctatatgagt ttgatctact tcgtatccta
     5641 atgtttttaa aatttctaaa gcatgattat gcaatgttaa attaagctgt ccttttgaat
     5701 ttccaaattc tttagcgcca ttaagcaaga gtatattttt catttttatc cttttttaaa
     5761 ttttatgata caattataac ttagcataat atcattttca atacagaaaa taaagtaaga
     5821 tactatacta aaggaatgtt aaatgactaa agagaattct cagtgcaatt tcgaagaatg
     5881 cggatttaac tatactctag cattaattaa tggaaaatat aaaatgagta ttttatactg
     5941 cttatttcgc tatgaaatcg tgcgttataa tgaactcaaa cgctttttaa gctccatatc
     6001 ttttaaaact ttaaccaata ccttaagaga actagaaaat gatggtttaa ttatcagaaa
     6061 agaatacgct caaattccac ccaaggtaga atatagctta tccaaacgcg gacaaagttt
     6121 aattcctatt ttacaagcta tgtgcaaatg gggcgagaaa gacaaaaagg aaaaaaatgc
     6181 ttgaattaat tggcgaactt tctttgcaaa attatatggg agaatggctt gaaatggcta
     6241 gaaaacctgc tttttttcaa aaatcttgcc taaattcaaa ggcaaaatac gagcttaaat
     6301 ataaaaatgg cgttccttat gtagaaattg agaatttttg cagtaaagaa aatgaaattt
     6361 caagcataaa aggcaaggca aaaatcgttt caaataggca attagcagtg agatttaaca
     6421 tctttatgaa cctttttaat aaggtgaatt atgaaatcat ttttattgat agcgagtata
     6481 aagttgccat tgtgggtagt cctgataaaa aatatctttg gattttagca agaaatataa
     6541 ttgatgaaaa aagcataaaa gagcttttag acatcgctaa gcaaagggga tttagcgtta
     6601 gcgatgtgat ttttgataag tattaaatta ttcttttgtc atatcaataa catagcgaaa
     6661 tttagccttt cctgaggtta gattttcata agctttatcg atttcttgtg gtgtgataag
     6721 ctcggtttct ggataaattt cgtgttttaa agaaaaatca agcatttctt gagtttcagc
     6781 aataccgcca attagcgagc cataaacctt tttacctgcc ttatgtacaa gctcgtttat
     6841 gcctatattt accttatctt ccacaggtgg taagccaact atagccattt cgccaccaaa
     6901 tttaagtaaa tccaaataaa ttgcaggatt ataaggcgtt ggaatggttg agatgattaa
     6961 atcaaagcgt tcttttacgg cgtttttatc agtgcttgtg taaaatgagc ttacacccat
     7021 agctaaagca tcggcttttt tgttttcatt tctagcaaaa acgctaacct ttgcacccat
     7081 tttaacagcg tattttacag ccatcatacc aagtccgcca aagcctgcta tagcaacgct
     7141 tgagccttct tttatcttag aaaattttaa aggcgagtaa gtggtaatgc ccgcacaaag
     7201 caaaggcgca accttatgca ttggtgcatt ttttggcaca caaatggcaa atttttcact
     7261 tacaactatg ttgtttgagt agcccccata agtgttttca ttgccgtgaa atacatcgca
     7321 actattgtaa gtaaagatgg ttttgccatt ttcgcaaaac tgctcttgtg agcgtttgca
     7381 agcatcgcac tcaccgcatg aatttaccat acaaccaacc cctgcgtaat ctcctacttt
     7441 aaatttgctc acatttttac ccacagcgat aacttctcct gctatctcat gcccaggtac
     7501 gcaaggataa gtagcttctc cccactcgct tcttgcggtg tgaatatcgc tatgacaaat
     7561 acctgcatat aggattttaa tcaaaatatc attatcacca atagcgtggc ggctaaattc
     7621 aaagggtgtg aatttcgcat ctttactaag cattgcatag cctttacttg cgatgcgatt
     7681 gttttctaaa attttatatt gcattttcgc tccttttttg attttttata attataaaac
     7741 attagagtag ctataagtca agagtgaaaa taattttttt aaaaactagt ataaatgcta
     7801 taattataaa atttaatttc actttggggt aaaaatgcaa aatttgtatt cagaagatga
     7861 tactagagta aaatttatag atgcaaagct ttatgatagt tcttggaatg aagaaaatat
     7921 aaaaagaaat tattatttta cagatggtag aaagctttta ggtggtaaaa gagcacaaag
     7981 aaaatttgca gattatttgc ttagatatga aggaaacaac cttgctataa tagaagctaa
     8041 aaaatttagc aaagatcctt tagatggttt atctcaaggc atagaatatg caaaaatttt
     8101 aaatgtgcct tttgtatata gtagcaatgg agaaaaaatt tatgaatacg atataagaag
     8161 tcatagtggt aaatatatag ataaattccc aagtcctaaa gagctttttg ataggattta
     8221 tggcaatgtc aaagaatggc aatacaggct tttaacccaa aatgttatgt atattccgca
     8281 aaaagaatta aggtattatc aaaaaatagc catagacaaa gtcatagaag ctattataaa
     8341 taacaaaaat agaattttac tcactcttgc tacaggcaca ggaaaaacaa ccatagcttt
     8401 taatttgtgt tatcgtttgt tagaggcaag atggaataaa gaaaacaaag atcaaaagcc
     8461 taaaatacta tttttatgtg atagagtgag cttaagagat caagccttag gagaatttaa
     8521 tcctatagaa agtgattgta aggcaattag tgctgaagaa ataaagaaaa atgatggaaa
     8581 aatcataaca aatgcaaatg ttttctttgg aatttatcaa agcttagccg caaattcaaa
     8641 agaacaagaa aacacccaag aagaacaaga gagcaaattt tatcttcaat acccaaaaga
     8701 tttttttgat cttatcatca tagatgagtg ccacagaggt ggagcaaacg aagaaggaag
     8761 ctggagagct gtgcttgagt atttttccta tgcaactcag cttggtttaa ccgctactcc
     8821 aaaaaaagaa gaaaatatag acacttatga gtattttggt gagagtgttt atgattatag
     8881 tcttaaaagt ggtattgaag atggattttt aaccccttat aaagtcaaac tcataaaaac
     8941 aactttgagt gatggttata cctataatcc tgatgatttg atacaaggtg agcttgaaaa
     9001 aggcttttat aaacaaagtg agtttgaaag aaatatcttt ttaccaaact ataatgactt
     9061 tatcgctaag aaaattttag agcttataaa tcccatggat aaaactataa ttttttgtgc
     9121 aaatcaagct catgcaaacg aggtaaaaag agccatagat aaatataaaa gtgttaaaag
     9181 agatgattat tgtgtaagag ttacgagtga tgaaggtaaa atagggcttg attatctaaa
     9241 gcagtttcaa gacaatgata aaagctttcc tgtcatactt acaagttcta aaatgcttac
     9301 aacgggcgtg gatgctaaga atgtccgcaa tatcgtttta ctagcaaata taggctctat
     9361 ggtggaattt aagcaaatca tcggacgtgg aactagagta tatgaaggta aagacttttt
     9421 taccatactt gattttgttg gcgctactaa gcttttttat gatccaaaat gggatggtga
     9481 aaaaataaaa gaactaaaag agcaaaacaa acaagaaaaa attactaaag agcaaataaa
     9541 acaaacaaaa gaagaaagca aagaaaaaaa gagcgtcact atacacttaa aaggcacaaa
     9601 gcttaaggtt ttagatataa ctacaagcta tgtaggagca caaggtaagc cacttagcac
     9661 taaagaattt ttagaatttt tgataggaaa gcttggtgag tattatgatg atgaagcaaa
     9721 attgcgtgaa atttggagtg atcaaaaaaa tagagaaaga tttttaaaag cccttgcaaa
     9781 tgatggagta gatgaagatg ctttaaaaga tctaagaaaa atttttcaaa aagattgtga
     9841 tatatacgat gttttagcgc atttaagctt taatgccgag ataaaaacaa ggcaagagcg
     9901 tgttttacaa gtagaaaatg gtgagttttt aaaacgcttt caaaaagaaa aggctataaa
     9961 atttatagaa tttttactaa atagatatca agaatacggc ataaaagatt ttgatgatgg
    10021 cttaaaaccg cttatagagc ttagttcttt aggcaatgta agagaattgg ccgatgaatt
    10081 tggtggctta gaaattctaa aacaaagttt tgatgattta caaagggaga tttatgcgag
    10141 gtgatatgtt taaagataaa tttgagattt ttagttaaaa taatctctaa aaaataatta
    10201 tctatatatt ttaagaaaaa agtaggaaaa aatatgctta tagaatttag agtagaaaat
    10261 tttttatcca ttcaagatga gcaaatttta agtatgatgg caagcaagga taatactttt
    10321 tttgattctc ataccaatgg cgataaaaaa ttagctttgc taaaaagtag tgtgatttat
    10381 ggggcaaatg cttctggaaa atcgaatatt gtaaaagctt tgcaaactat gaaaaccatc
    10441 gttatatcaa gcgcaaatac gcaaagggga gataagttac ctataacacc tttcttgcta
    10501 ggggatgaag atgataaacc tacaaaattt gaaattattt ttatacaaaa tgacacaaag
    10561 tatcaatatg gctttatttt aaattctgaa aaaattttag aagaatggct tttaactttt
    10621 gatgaaaata ataccgagca aaattggttt gaaagaattt ataataaaaa agaaggaaga
    10681 tataattatt cttttgggga tcaattttta gctgatgaaa tttataaaca actatgggaa
    10741 aatagcacta gagataatgc cttgttttta tctgtggcta ttcaattaaa taatgagcaa
    10801 ttaaaacctg tatttgattt ttttaatctt aaactccaaa tagcaaattc aaatggttgg
    10861 ggtaatggaa aaagtatcac gattaatgaa tataaaaaag acaaagaatt agtcaatagt
    10921 ttttttaaaa tagctgattt agatatagaa ggtgtagaga ttaaaacaag cgatattgat
    10981 gaaaactcat taccatcaaa tcttcaaaat attccacaag aactcaaaga aaaaatcatt
    11041 caagaagtta aaaatattca aaatttaaaa aatgtaaaaa tactagaaga tatatctttt
    11101 atacacttaa gtcaaaaaaa tcaaataaaa tttttaaatt ttaacgatga atcagatggc
    11161 acaagaaaat tttttaatat agcaggtatt tggattgatt ctttaaaaaa aggaaacatt
    11221 ttaataatag atgagctaaa tactcactta caccctttaa tgacaaaatt cttagtaaat
    11281 ctttttcata atgaagattt aaacaaatca aatgctcagc ttatttttac cactcatgat
    11341 acttccattt taaatcaaga tatctttaga agagatcaaa tttggttttg cgaaaaacaa
    11401 aataaagcaa ccaagcttta tcctttgagt gattttgaag agagtgaaga gagaagagat
    11461 aaaacaaatt tggaaaatga ttatctttta gggcgttttg gggctttgcc ttattttaaa
    11521 gaaatactat catcatggag tgataatggg aactgatgat ttacgcaaaa aaagaaatac
    11581 aaaaacaaga gatagagaag caaaaagaaa aaaaaatgaa attatactta tagtatgcga
    11641 aggtgaaaaa acggaaaaaa actatttaaa tcaattaaaa gattttttta gattaagcaa
    11701 tgtaagcata aatattattt caagtaaaaa accaaaccct tcacaaatag tagagtttac
    11761 caaagaaaaa aataaagatt attcctataa taaagtttat tgtgtatttg ataaagatac
    11821 gcattcagat tttgacaaag caaggcaaga atgtgaaaaa tacaaatttg aagcaattac
    11881 ctcaaatcct tgttttgaat tttggatact tttacatttt acatacacta caaaatcatt
    11941 tagcacaaat agtccttgta atgaattaat tgagagcgat ttaaaaaaac atataaaaga
    12001 ttataaaaag gattataatt ttacaagcat tataaagcaa aatcttagta cagctattgc
    12061 aaatgctcaa aaagcgaata aagaagcaga aaaaaataac tatacaagct catatacttt
    12121 tatggataaa cttgcactta aatttcaaga attaaacagc gcaagaataa accaatgaca
    12181 aatttaccgc agggttggga agttaaaacg cttagcgaga taggtgaaat tgttacgggt
    12241 tcaacaccta gtaaaagtaa tttagatttt tatggaaaag attatccatt ttttaagccg
    12301 agtgatttcg agcaaggata ttttttagaa aatgctggag ataatctatc aaaactaggt
    12361 tttggcaaag ctagacagct tccacctaaa acaattcttg tggtttgtat aggttcttta
    12421 ggtaaagtag cactaactaa agttattggg agttgtaacc aacaaataaa cgcaattatt
    12481 cctcataaaa atataatttc cgagtatatt tattattatt gcatatcttc taaatttcag
    12541 tctatattat tttcaaaagc accacaaaca actttagcta ttttaaataa gactgaattt
    12601 tccaaactcg aaattattta tccaaaagac ataaaagagc aagaaaggat agtggggatt
    12661 ttggattttg cttttagtaa gattgatgaa aatatcaaaa aagcaaaaga aaatttagca
    12721 aatattgatg agcttatgca aagtgcttta caaaaggctt ttaatccact taatgataat
    12781 actaaagaaa attatcaact cccacaatct tgggaatgga aaagcttagg ggatactagc
    12841 aactatggaa aaacatcaca agtaaaacct agtcaattaa aaggtaatga ttggatttta
    12901 gaacttgaag atatagaaaa agaaagcggt gttttgttgc aaaaagtgtt atttcaggat
    12961 agacaaagta aaagcaataa aattaaattt aacaagggtg atattttatt tggaacattg
    13021 cgtccatatc ttaaaaaagt gattatagct gatgataatg gggcttgctc ttctgaaata
    13081 atgccatttt ctacgggtaa ttccataaca aatcatttta tttattatta tttatttgcc
    13141 aattttttgc acgatagaat ctcaagttta acctatggtg caagaatgcc tagacttgga
    13201 acaaaagatg gcaaatccct acaaatcccc ctaccacctt tacaagagca agagcaaatc
    13261 gcagagcatt tagattttgt gtttgaaaag gcaaaggctt taaaagagct ttacactaaa
    13321 gagctaaaag attatgaaga gcttaagcaa tccttacttg ataaggcttt taagggagaa
    13381 ttataatgtt aaaaaatttg ccaaatttta acacattggc ttgatatgtt aaaaattttt
    13441 gattttttta acatattgca gttcaaaaac aaaaataaaa aataaaacta gactttgata
    13501 aaactatttt aaaagcttta aagggagaaa atgcaaaaca aaatcgataa aatcacagat
    13561 attctaagaa gagatgatgg cataagtggt gctatgcact atacagagca gattggctgg
    13621 atactttttt taaaattttt agatgattat gagacaaatt taaaagattt agcgttttta
    13681 gatggcaaag attataaaag cattttgcaa gaaaaattta gctggagtgt ttgggcagca
    13741 cctaaaaaag atggcaaact tgatgtaaaa aatgctttaa gtggatcgga tttgcttgaa
    13801 tttgtaaata aagagctttt tccttatctt aaaaatttta aaaataatga tgattttaaa
    13861 agtatagagt ataaaatcgg tggaattttt gaatttatag acaatcgcat agcaaatgga
    13921 catactttaa gagaagtgat aaatatcatt gatgagatta gttttaataa agaagatgaa
    13981 gtatttgcct taggtgaagt ttatgaaaaa cttctaaaag atatgggtag cgatggtgga
    14041 aatagtggag aattttacac ccctcgtcct ttgataaagg ctatggtgga agtaatagat
    14101 cctaaaccaa aagaaagaat ttatgatcct tcttgtggta gttgtggatt tttagttgag
    14161 agttttttac atattttata taaagacaga accaaaggca aaaaagcaaa tttaagcgta
    14221 gaagagcttg aatttttaaa aaatgatgct ctttttggta aagaaaaaac tccgcttagc
    14281 tatgcaatgg gcgttatgaa tatgatactt catgaaattt caagtccaaa tatcataaaa
    14341 acaaacactt taagtaaaaa aatcacagat ataacagaac aagaaaaata cgaagtaatc
    14401 cttgcaaatc caccttttgg aggtaaagaa aaagaacaaa ttcaagaaaa ttttcctata
    14461 aaatcaaacg ctactgaact tttgttttta caacacattt taagatcttt aaaaaacaat
    14521 ggaagatgtg cgatcatcgt gcctgaaggt gtgctttttc aaaattcaaa tgcctttgtg
    14581 agtgtaaaaa aagatttact agatgatttt aatttagaat gcgttttgag tttgccaagt
    14641 ggagtatttt tgccttatag tgcggtaaaa acaaatgtat tatttttctc aaaaggctta
    14701 aatagtattt taaaagcaaa tgatgataag gtgtattact acgaacttat accgccttat
    14761 aaacttacta aaaataagcc tttagaatac gcacatttta acgaatttct aaaatactac
    14821 aaagaaagaa aaatcactgc taattcttgg cttgttagca aaaaagagct tgaagaaaga
    14881 aactatgatc taagtgctaa aaatccaaat gtaaaagaag aaaaaatcct aagaactagc
    14941 gaagagattt taaattcttt agaagaaaat ctaaaaacac aacaagaata tctaaatgaa
    15001 cttaaaagca tactaaaata attgcaagtt ttttgataaa aactaattta caaataactt
    15061 ctaagctcaa tttacaataa atattcattg cttgtattct actttttaat atcatcaaac
    15121 aaatttaggg catttaaagc ttttggataa ccgatatatg gaataagagc tgcaatgata
    15181 tttagcaaat cttttctact ttgccccatg ttaagattgc cttgtatgtg agcttttact
    15241 tgattgtcga gcccaccaag tgagataaga tatacaaggg ttaaaagctc tctagttttt
    15301 agatcaagtc ccatgcgtgt atagtagtct ccaaaacaat tcgcactcaa aaaatcattt
    15361 ataaaagctt tatcttctgg tgtagtttct atcattttag tgatattggc ttcactaaaa
    15421 atagcatttt gtatttccct gccttttatt ttgcgatttt cttgcgtagt agtaccttgt
    15481 ggagttaaaa ctaaggcgat atttagtttt ttaaacactt tattacaaag gcttaaaaaa
    15541 tcacatactc tagcaaaacc cacataaggc gtagcttgat aaatcacttc tttaatgaca
    15601 ataggactta tatcgttctt gattgcacct tgaagtaaag ctttaaactc tatttttcca
    15661 cctactgcta aagtagaagc aagggtgatt aaaaaatatt tttgtgtatc caaatttgct
    15721 tttacaaaac tctcgccaaa agtaaaatta atgtgattag taaaaaactc cttatcactt
    15781 gcaaaaagtt gatccttttt tgctcctcct aagagttttt caaaaatttc tcttgctttt
    15841 tgtcttaatt gcatggtttt atcctttgtg gtttttaaaa tttgtgaaaa aagagcattt
    15901 aaaatactcc aaaaacataa aagtttttat aaaatttttg tgttttattt acaaatttct
    15961 ttactctctt gcttctttta aggcattttc atattcttca tcgcttacaa gctcaagcca
    16021 ttctacattt ttaccttctt tttcgcctgt aagtgctatg tgtactccac tacttgtatt
    16081 agttgcacca tgaaaatgct ttactcctat aggacagctt atcacatcgc cttttttagc
    16141 tataaaggct ttttgccctg gaacttttgt gatgatttcg ccttctgtta cgattaaggt
    16201 ttgtccttga ggatgagtat gccatgcact tctagcactg gcttcaaatt caaccaaagc
    16261 cccactaaaa tttctccact catttgattt aaacatcata gaaactttta catttttgct
    16321 aaaaaattta ctatcgcctt taaaacttcc atgaattcct gctttttcta attcttgcat
    16381 tttacctcct tttttagtat tataaaacat gagagctact ctaagtcaag taaaaattta
    16441 aaatcttaat ttcatttttt ctatcctact tcttacaaaa atcatgataa ttcctaaaat
    16501 caacaaaaca atagtattta cgataatata acgcgtatca ctcaaagaaa tcacaagtcc
    16561 acaaatagca gttccggtgc ttaatcctat attggccacg cttataaaaa gtccattgct
    16621 aaaattagca gcctttggaa agggataact tatcataaaa tgcgtgccgt tattcatcac
    16681 acctgctaaa attcctaata taaaggcaaa tattataagt ataatttcac tataaaaact
    16741 aaaaagtaaa atataaaatc ctatcataat taaaggtgtt aaaatcaaag taaaatttgc
    16801 gtttttaaca agggtctttc cggctatata attgcctata atatttgaaa aaccataaat
    16861 agccaataca atactaatta aagtaaaatt catctttcct acactatgta agaaatcaga
    16921 aaaataagag taaaaacccc aaattccagc atttatacaa ataacacaaa gtatgctaat
    16981 ccataaaagc gggtatctta aaataagcaa ttgtttgctt atttttacag aatttacttt
    17041 tttaaaatca ggaacaaaaa ataaagttgc tataaaagat aaggtattta aaaatacaaa
    17101 aaataacatt gccattttaa aactaaaatt tccaccaaaa taactagtca taggtacacc
    17161 caaaaccatt ccagcactaa ctgctgcaaa aatcttagct gtagcttttg gaatttcttt
    17221 cttatcttcg actaaatttg taaccatact tagagcaaga gctatataaa taggatgaaa
    17281 aaaagcagga atagctctta aaataagcaa ttgccaaaat tcacccacaa aagcagaagt
    17341 taacgagctt aagataaaca cagctaaaca aataagcata agttttttag gattgaaatt
    17401 tgcacaaagt agcgggacaa taggggcgca aaaagttatc acgagtgcaa aaatactcac
    17461 acaccaaccc gcatctgaaa tacttacact gaaattttga gaaacaatag gaattatacc
    17521 catcatccct agttctgtgc tcaaaatccc aaatacccct aaacaaaata ctagaataat
    17581 ttgagcattt gaagctttat ttaaattttt cattttatcc tttcaattaa tatttttaaa
    17641 agtataaaag atgagagtag gtctaagtca ataacctaaa ataaaaatat ttatctatat
    17701 taaataaaat ctttagaaaa atctaaaact tcaaaataag catttaaaag aaataaaaga
    17761 tgccttaaaa gcataagata tcttttattt ataggcttat tactccaatg cgtgtatttt
    17821 tatcgcaaga attaagcact atgtctatca tagcactagc ataatcacta tagcttattt
    17881 tactcaaaca aatgtttaaa ataaaatttt tatttttatt ggttatgatt attttaggcg
    17941 tggctatatc ttttggaatt tttattaatt taatttaagg aaataaaatg caaaaatttt
    18001 taaccattat ttcagcaatc aataatgaaa gtaggatttt gattttgtat catcttttaa
    18061 gatacaaaga actttgtgtt tgtgatttac aagaactttt aaacatgggt caatcaagac
    18121 tttcaagaca tttaaaaatt ttaaaagatg caggtttttt gtatgtaagg cgtcaaggaa
    18181 cttgggcgta ttatgggatt aataatgagc ttttaaaact gcatttagat ctttttgaaa
    18241 atatcaaaaa tttagaactt aaaaatgcta ttaaaaaaaa tgaaaatatt attacccaaa
    18301 tttgccctta atataaaatc aacccttaaa cttatgcaat ttatcacaag gttgatagtc
    18361 cttgctttct ggattaaacc catcgacttc atttgcaagc atttcttcat aaatttttat
    18421 ctttttgctt aaaacttttt cactttcttt taatgtttta atctggtttt gtaatttttt
    18481 ctttgtttgc tttaacatct cttgtctctc tttggcagtt tttataccca aagagcaaag
    18541 ttttatataa tgtttgactt gttctattgg catacctgaa attctaagcc attctatcca
    18601 ttttgcccat tctatatcgc tttttgaaaa atatttcaca ctattttcat ctttttgaac
    18661 aaaaggaaac aaaccttttt tagcccaaaa tcttaaagta tgagcactaa tttttgtttc
    18721 tttttctact ttttttatag tataagccat attttctcct ttttaagata aaaataaaaa
    18781 tttattttat tttttttgtg ataaaataat agccaaatta ttagttttat gctaaaaata
    18841 acaaagatta aaaggaaaat aatgaatagt attaaaatca aactttccct cattgcaaat
    18901 ttaattgcaa tttttgcctt aattgttcta ggtattgtaa gtttttattt tacaaaaacc
    18961 tcactacatg aaagcgctct taaaaatcaa actgatctac ttaaagtcac acagtctacc
    19021 gttgaagatt tccgttccac aaatcaatct tttactagag ctttagaaaa agatatcacg
    19081 aacttacctt atcaatcttt aatcactgaa gaaaatatta ttaacaatgt tggtccaata
    19141 ttgaaatatt atcgtcatag tataaatgca ctaaatgttt atttaggttt aaacaatgga
    19201 aaagttttac ttagtcaaaa atctaatgat gcaaaaatgc ctgaattacg tgatgattta
    19261 gatataaaga caaaagattg gtatcaagaa gccttaaaaa caaatgatat ttttgttaca
    19321 ccagcatatt tagatacaaa tttaaaacaa tatgtaataa cgtattctaa agctatttat
    19381 aaagatggca aaatcatagg agtactgggt gtcgatatac catcagaaga tttgcaaaat
    19441 ttagttgcaa aaactcctgg aaatactttt ttatttgatc aaaaaaataa aatatttgca
    19501 gcaaccaata aagaattatt aaatccatcc attgatcatt ctcctgttct aaatgcatat
    19561 aaaacacatg gagactataa cttttttact tatggattag acggcaaaga aagacttgga
    19621 acttgtacta aagtctttgc ttatacagct tgtattaccg aaagcgctga tattataaat
    19681 aaacctattc ataaagctgc atttattcaa gccattgttg tcattattgt agtagta
//
LOCUS       DAEDTT010000016        19532 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.016, whole genome shotgun sequence.
ACCESSION   DAEDTT010000016 DAEDTT010000000
VERSION     DAEDTT010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19532
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.016"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            5..685
                     /gene="ubiE"
                     /locus_tag="KLC54_000465"
     CDS             5..685
                     /gene="ubiE"
                     /locus_tag="KLC54_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HBD9176868.1"
                     /translation="MFNQIAPTYDKANRILSFGADVVWRKKACQRVMSLYLKKDLKIA
                     DIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEFIEAGAQNLP
                     LESQSLDILSISYGIRNVVERQKALSEFARVLQKGGILVVLEFTKREKGGFIAACRDF
                     YLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKEEFILELKNAGFEMLDYKSFSFGVS
                     SMFIAKKL"
     gene            682..1845
                     /locus_tag="KLC54_000466"
     CDS             682..1845
                     /locus_tag="KLC54_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HBD9176869.1"
                     /translation="MTPTELNLKAKALLETHFEDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGDFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPLFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NHKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            1855..2931
                     /gene="serC"
                     /locus_tag="KLC54_000467"
     CDS             1855..2931
                     /gene="serC"
                     /locus_tag="KLC54_000467"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HBD9176870.1"
                     /translation="MRKINFSAGPSTLPLEILEQTQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLSLNGVCEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFNHIPRVEFSDNADYAYICSNNTIYGTQYQNYPKT
                     KAPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGELDKVHEKNSQKAAMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            2928..3278
                     /locus_tag="KLC54_000468"
     CDS             2928..3278
                     /locus_tag="KLC54_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HBD9176871.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDTLFEKIGACKGDLIQIQIWLANMQDFDAMNEIYDAWIKNYPKPIRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3275..4249)
                     /locus_tag="KLC54_000469"
     CDS             complement(3275..4249)
                     /locus_tag="KLC54_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HBD9176872.1"
                     /translation="MLKASLKSIASYIPEKILSNADLEKMVDTTDEWITRRTGIKERR
                     IASENENTSDLGTKAALKAIKRANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIIGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSNLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGDLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(4242..5228)
                     /gene="plsX"
                     /locus_tag="KLC54_000470"
     CDS             complement(4242..5228)
                     /gene="plsX"
                     /locus_tag="KLC54_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HBD9176873.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNENATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIINKTLLLDVGANTDCKAENLFQFAIMGEVY
                     ARAIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKPSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINELIENELGKYNA"
     gene            complement(5234..5380)
                     /gene="rpmF"
                     /locus_tag="KLC54_000471"
     CDS             complement(5234..5380)
                     /gene="rpmF"
                     /locus_tag="KLC54_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HBD9176874.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            complement(5404..5757)
                     /locus_tag="KLC54_000472"
     CDS             complement(5404..5757)
                     /locus_tag="KLC54_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176875.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINSKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCNN"
     gene            complement(5758..6171)
                     /gene="ndk"
                     /locus_tag="KLC54_000473"
     CDS             complement(5758..6171)
                     /gene="ndk"
                     /locus_tag="KLC54_000473"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HBD9176876.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIDFFFKPNEIC"
     gene            complement(6284..6568)
                     /locus_tag="KLC54_000474"
     CDS             complement(6284..6568)
                     /locus_tag="KLC54_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HBD9176877.1"
                     /translation="MAVKITDICIACGSCIDECPVSAIVDDVNNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            6774..7370
                     /locus_tag="KLC54_000475"
     CDS             6774..7370
                     /locus_tag="KLC54_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HBD9176878.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
     gene            7489..8577
                     /gene="flhB"
                     /locus_tag="KLC54_000476"
     CDS             7489..8577
                     /gene="flhB"
                     /locus_tag="KLC54_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HBD9176879.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(8583..9326)
                     /gene="motB"
                     /locus_tag="KLC54_000477"
     CDS             complement(8583..9326)
                     /gene="motB"
                     /locus_tag="KLC54_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HBD9176880.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQALENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAP"
     gene            complement(9329..10105)
                     /gene="motA"
                     /locus_tag="KLC54_000478"
     CDS             complement(9329..10105)
                     /gene="motA"
                     /locus_tag="KLC54_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HBD9176881.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLIEFAIIARRDGLLALESRTNE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGRKMKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPKISQFDKG"
     gene            complement(10121..12760)
                     /gene="polA"
                     /locus_tag="KLC54_000479"
     CDS             complement(10121..12760)
                     /gene="polA"
                     /locus_tag="KLC54_000479"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HBD9176882.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEHKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISV
                     SQEGYEADDIIASFVRTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPHQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYENLEVQDLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLIQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMSENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFGLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNALLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAK
                     SYIEKYFENFTSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESI
                     NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            12921..14282
                     /locus_tag="KLC54_000480"
     CDS             12921..14282
                     /locus_tag="KLC54_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HBD9176883.1"
                     /translation="MTNQQIDGIADKNFNTPEGRKVFKKAVFSCWLGTAMEYADFALY
                     GLAAATIFSEVFFPEQTPVIALLLSFVTYGIGFIARPIGALFFGYLGDKHGRKNVMMS
                     TVALMGISTTLIGFIPSYAVIGVWAPICLVILRFMQGFGAGAELSGGTVMLGEYAPSK
                     RRGLVSSVIALGSNSGTLLASFVWLLMVQMDEASFKEWGWRVPFMGSILIALFAVYIR
                     FHVKETPVFEKQKNEMMKLRLNNEKHMKKDERSFWQRSRAFWTMVGLRIGENGPSYLA
                     QGFIVGYVTKILLLDKSVATTAVMIASLVGFLVIPLAGYLSDRFGRRITYRMFCLLLM
                     IYAFPAFMLLDSKNEIIVILTIIVGMSLASLGIFGVQAAWGVELFGVKNRYTKMAFAK
                     ELGSILSGGTAPMVASALLAYYGTWWPIATYFVLTAGIGFVTTFFAPETRGRDLNKIE
                     DAI"
     gene            14279..15286
                     /locus_tag="KLC54_000481"
     CDS             14279..15286
                     /locus_tag="KLC54_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HBD9176884.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILASKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFKRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLVPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYASKTRGTKGTWIHDALTIAYALDSSIADFDECYADVICDSSL
                     ARGMSWRCFKEPKMSMGVDLSTKNCVKILKNVDNTKLLKLIKERLLKGVCYENYESIT
                     T"
     gene            complement(15242..15685)
                     /locus_tag="KLC54_000482"
     CDS             complement(15242..15685)
                     /locus_tag="KLC54_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HBD9176885.1"
                     /translation="MFDFLYNDISYLGLFIVCFLSSTLLPLASEAFVLGFIKLDFNPN
                     LVLIVATLGNTLGSLSTYGLAYLGKQKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYAFIIFIANSF"
     gene            complement(15690..18515)
                     /gene="uvrA"
                     /locus_tag="KLC54_000483"
     CDS             complement(15690..18515)
                     /gene="uvrA"
                     /locus_tag="KLC54_000483"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HBD9176886.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSASDIVSEILKFPKGAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHCACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKGLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRAQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCQGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            complement(18588..19373)
                     /locus_tag="KLC54_000484"
     CDS             complement(18588..19373)
                     /locus_tag="KLC54_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HBD9176887.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNLINF"
BASE COUNT         6335 a         3003 c         3200 g         6994 t
ORIGIN      
        1 agaaatgttt aatcaaattg cacctactta tgataaggcg aatagaattt taagctttgg
       61 agctgatgta gtgtggcgca aaaaagcttg tcaaagagtg atgagtttat atttaaaaaa
      121 agatttaaaa atcgctgata ttgcctgtgg cacaggggat atgatagaga tttggcaaga
      181 gagtgcttta aaaatggaaa aaaacatttt aaatattaaa ggtattgatc caagtagtgg
      241 catgctaaat gttgcaaaag aaaaatttcc gaatgtcgaa tttatagaag caggggcgca
      301 aaatttgcct ttagaaagtc aaagtttaga tattttaagt attagttatg gcattcgcaa
      361 tgttgtagaa aggcaaaaag ccttaagtga atttgctaga gtacttcaaa aaggtggtat
      421 tttggtagtt ttggaattta caaaaagaga aaagggtgga tttatagcag cttgtagaga
      481 tttttatctt aaaaatattt taccaagtat aggtgggata atcagtaaaa ataaaagtgc
      541 ttatgagtat ttgccaaact ctattgaagg atttttaagt aaggaagagt tcatcttaga
      601 acttaaaaat gctggttttg aaatgcttga ttataaaagt tttagctttg gcgtgagttc
      661 aatgtttata gcaaaaaaac tatgacacca acagaattaa atcttaaagc aaaggcttta
      721 ttagaaacac attttgagga tatagtttta agtggagaaa tttcaaaaat cactttgcat
      781 ggttcagggc attggtattt tgatttaaaa gatgaaagat caagcattgc ttgtgctatg
      841 tttaaaggag ctaatttaaa agtcggattt aaaccagctg tgggggattt tttagagctt
      901 tgtggaagtg tgagtttata tcctgaaagt ggtcgttatc aatttatcgc tactagtatg
      961 aaaaaagcag gttttgggga tttggaagca cagtttttgg ctttaaaaga gcgtttgcaa
     1021 aaagaaggac tttttgatcc actctttaaa aaatctttgc caaaatttcc taaaaaagta
     1081 ggcattatca cttcaaaaac ttctgctgct ttgcaagata tgttaaaact tattcatcaa
     1141 aaagaatatt ttttggcaaa aatttatatt tttgatgctt taactcaagg aaataatgct
     1201 cctttttctc ttatacaagc tttaaaaaaa gccgatgata tggatttaga tgttcttatt
     1261 atagcacgtg gtggaggaag cagggaagat cttttttgtt ttaatgatga aaatttagca
     1321 agagagattt ttaaagcaaa aactcctatc atttcagcca taggacatga gattgattat
     1381 gttattagtg attttgttgc agattttaga gctccaacgc cctcagctgc tatagatact
     1441 ttgttttatt ctaagctgga tatagagcaa agtttggatt taatggaaga aaaattgatg
     1501 caactttgga atcataaaat acaaaattat gaaaatttgc ttttaaattt aagcaaattt
     1561 ttcaaattta attctttgcc aaaaataata gatgaaaaaa taaaacaaag ccataatata
     1621 gaaaagcaat taaatcatct actagcaaat caaatgcgtt ataatgaatt aaaattagat
     1681 aaattgcaaa atgcttattt gcaacatgag aattttttta ataaaagcaa aaagtttatt
     1741 tgtatcagaa aaaatggtaa aatagcaaat ttagaagatc ttaagagtga tgatattgtt
     1801 attttaagtt ctcaaacttc tcaaaaagaa gcaaaaattt tataaggata gattatgaga
     1861 aaaatcaatt tcagtgcagg gccatcgact ttacctttag aaattttaga gcaaactcaa
     1921 aaagaactct gtgattatca gggtaggggt tattctataa tggaaatttc tcaccgcaca
     1981 aaagtatttg aagaagtgca ttttggagca caagagaaag ctaaaaaact ttacgggtta
     2041 aatgatgatt atgaagtatt atttttacaa ggtggagcaa gtttacaatt tgctatgatt
     2101 cctatgaatt tgtctttaaa tggggtttgt gaatatgcaa atacaggagt ttggacaaaa
     2161 aaagcaatta aagaagcgca aattttaggt gtcaatgtta aaaccgtagc aagtagcgag
     2221 gaaagtaatt ttaatcatat tcctagagtg gaatttagtg ataatgctga ttatgcttat
     2281 atttgttcta acaatactat ttacggcact caatatcaaa attatcctaa aactaaagct
     2341 cctttgattg tggatgcatc gagtgatttt ttttctagaa aagtagattt ttcaaatatc
     2401 gctctttttt atggcggggt gcaaaaaaat gctggaattt cgggtttaag ttgtattttt
     2461 atccgtaaag atatgttaga aagatctaaa aataaacaaa ttcctagtat gttaaattat
     2521 ttgactcatg ctgagaatca gtccttgttt aacacgcctc caacctttgc tatttatatg
     2581 tttaatcttg aaatggattg gcttttaaat caaggcgaac ttgataaagt acatgagaaa
     2641 aattctcaaa aagctgctat gctttatgag tgtattgatt taagcaatgg attttataaa
     2701 ggacatgcag ataaaaagga tagatcttta atgaatgtga gttttaatat tgctaaaaat
     2761 aaagatttag agcctctttt tgtaaaggaa gccgaagaag ctggaatgat aggacttaaa
     2821 ggacatagaa ttttaggagg aattcgtgca agtatttata atgcgcttaa tttggatcag
     2881 gtaaaaacct tgtgtgaatt tatgaaagaa tttcaaggaa aatatgcatg ataaagcgtt
     2941 ttgatgagtg cgatagaatg tcgcaaatta ttgtttttga taaatatttt aaaactgcag
     3001 gacaagtggc ttttgaacct agcggagata ttaaaaaaca aactaaagaa gcacttgcag
     3061 aacttgatac tttgtttgaa aaaataggcg catgcaaagg agatttgatt caaattcaaa
     3121 tctggttagc taatatgcaa gattttgatg caatgaatga aatttatgat gcttggatta
     3181 aaaattaccc taaacctatt agagcttgtg taggaagtgc tttagcagag ggttatttgg
     3241 tggaaattca agcttttgga aagctaagag agaattaaaa attctctcct ccaaatttta
     3301 aaagtgcaga tccccaagta aaaccaccgc caaaagcatc tagtaagatt agatctcctt
     3361 ttttaagtcg accttcttca taggcatcat tcattgccat aggtatagaa gcagctgagg
     3421 tattgccata tttttgtacg gtaatcacac atttttcatc gcttagattg agtttttctt
     3481 ggacggcttt aatgatgcgt agattagctt gatgaggaat aaaaagatca atttcttgtg
     3541 ctaaaatgtt atttttggct aaaatttcta caacatcatt gctaagtgtg tttactgcta
     3601 ttttaaaaac ttcattgcct ttcatttgca tagaaagtgt ttgacatagg tttgattttt
     3661 gcgatctttg agtcattaaa agatctccat aattaccatt gcttgcagta tgtacatcaa
     3721 ggatgtgatt ttcattatcc aagcttacaa ctccagcacc cgcaccgtct ccaaagagta
     3781 tgcaaatact tctgtcattg taatccataa tggaacttgt tttttcagct cctatgatta
     3841 aaacattttt tttcaaacca ctttctacca aagctttagc ttgttcaagt aaatagataa
     3901 aaccagaaca agctgctgaa atatcaaaag cactgatatt tacgagtcct aaatttgaag
     3961 caattttaca agctgttgaa ggcatagtaa aataatcagg acttaaagtg gctacgagaa
     4021 tagcatcaat atcttcaggt tttaaatttg ctctttttat ggctttcaat gcagcttttg
     4081 tgcccaaatc gctagtattt tcattttcac tagcaatgcg cctttcttta atacctgtgc
     4141 gtctagtgat ccattcatcg gtggtatcta ccattttttc aagatcagca ttgcttaaaa
     4201 ttttttctgg aatataagaa gctatacttt taagactggc tttaagcatt gtatttccca
     4261 agttcatttt ctataagttc attgatatga gattggctaa aatttatagc ttgaaaaatt
     4321 gcatttttaa tagctctaga atcgcttttt ccatgactta tgatcacaca gccattaact
     4381 ccaagaaggg gtgctccgcc atattcttgc caatctgtgt gtttttttaa ttttttaaaa
     4441 gatggcttca taagtaaagc acctatttta gaaataaaag attgttttac ttcgtttttt
     4501 agaagttgaa aaatagctgt tgctacacct tcgcaagcct ttaaaataac atttccatca
     4561 aaaccatcac agactaaaac atctatttca ccattgaaaa tatctctacc ttcagcatta
     4621 cctataaaat ttggaatttt tttcataagc tgatgacttt ctttggtaag ttcattacct
     4681 ttgcattctt cttcaccatt agaaagtaaa gcaaggcgtg gtttttgaat ttgcatgatt
     4741 gctctagcat aaacttcacc cattatggca aattgaaata aattttcagc tttacaatct
     4801 gtattagctc caacatccaa aagtaaagtt ttgttaatga tatttggcat taaagtggca
     4861 atagcaggtc ttgaaatgcc tttaagtctt ccaagcctta aggtagccaa agacatactt
     4921 gctccactat gacccgctga aactacagca tctacttttt tttcttttaa taaattaata
     4981 gctttgtata tggttgtttc tttatttttt aaagcatctg tggcattttc attcatcgaa
     5041 aaaatttcac tagcttcttc gtattgtata tattgttcta atttttttgg tattaaaggt
     5101 tttagaattt tagaatttcc cactaagata gcgttaaaag gttttgcttc tagcgccttt
     5161 aaaacgcctt ctataatggg tttttctcca aaatcaccac ccattgcatc aatggcaatg
     5221 ttaatcattg attttaatat tccttagttg ttggattcgc acggtgaggc attttgtagc
     5281 ttccatcttt gtcttttata ggcataggaa gactaacttt atagtgagtt ctgcgtttag
     5341 ctgcacgagt tttgctcact cttctctttg gtactgccat tttttctcct ttataaaatt
     5401 taattaatta ttgcaattta tgcaataaaa ataatcactt aaataagctt caagctcgct
     5461 gatagcaact tctattaaat caatatgtcc atcgaaaaat tctatagtat tgctcaattc
     5521 gtttgcttca tctttaaaaa taccatcact tgcaaaaagt tctaaatttt ctttaatttc
     5581 aagttctaac tcagttccac aactatcaca aggtctatag ataaaacctt gcataatagc
     5641 atttatttta acaagcttag aatttatttt tactaaattt ccctcaaaaa tcatattttc
     5701 aagattaagt ttaaaaggat attcctttgt attaatctta gaaaaaggga ttttcattta
     5761 gcaaatttca tttggtttaa agaaaaaatc aatttctatt tttgcatttt ccaagctgtc
     5821 acttccatga acagcattag catcaatact ctcagcaaaa tcggctctaa ttgttcctgc
     5881 tttagcttct ttaggatttg tcgctcccat taaatctcta ttttttaata cagcaccttc
     5941 tccttctagt acagaaacaa caacaggacc gctaatcata aattcaacca agtctttaaa
     6001 aaaaggtctt tctttatgaa cagcataaaa attttcagct tgttctttac taagttgaac
     6061 ttttttcatt gcagcgattc ttaatccatt gctttcaaaa cgatctaaaa tttttcctat
     6121 aacacctttt ttaacagcat caggtttaat tatagataaa gttttttcca tctttgtaat
     6181 aactccttat tttaataaag cttaaaatta tacttgaatt tgtttaaaga aagttaaatt
     6241 aaaagaaaaa gctaggaatc tctagctttt taatttttta aaattatgca aaaactggag
     6301 tgtccccact tctcatatca gcgccaatat tatcacgact tggttgtcct gattctacag
     6361 cactccaaac tatacatcca tctgttgggc aagcactagc acaagcgggt tgatcattat
     6421 gtcctacgca ttcaacgcat ttgtttgcat aaacataata tctatcttcg ccttctggat
     6481 tgttaacatc atcaacgata gcactcactg gacactcatc aatacaagaa ccacaagcaa
     6541 tacatatatc tgtaattttt acagccattt tttctccttt ttaatattaa gatttaaaag
     6601 attttagcat aaaattctta aataatgtaa attttgataa tcaaaaattt acattatttg
     6661 ataataatta taactttctt aaatttttaa tattatttta gatatttaaa aaaaaataaa
     6721 gatttaaacg atataatttc gttatcaata aaatttatta tttaggagaa aatatgatag
     6781 ttactaaaaa agctttagat tttactgctc cagcagtatt gggaaacaat gaaattgttc
     6841 aagattttaa tctttataaa aacataggtc caaaaggagc ggtagtattc ttttatccaa
     6901 aagattttac ttttgtttgt ccttcagaaa ttatagcttt tgacaaaaga tatcaagaat
     6961 ttaaaaaccg tggcattgaa gtaattggaa tttcaggaga taatgaattt tcacattttg
     7021 cttggaaaaa tactccagta aatcaaggtg gtattggtca ggttaaattt ccgcttgttg
     7081 ctgacttaac taagcagatt gctagaaatt ttgatgtact ttatgcagaa gcagttgccc
     7141 ttcgtggttc gttcttgctt gatgctgatg gaacagttcg ccatgctgtg gttaatgatt
     7201 taccactagg tagaaatata gatgaaatgt taagaatggt tgatactatg ctttttacaa
     7261 atgagcatgg tgaagtttgt cctgcaggat ggaataaggg tgatgaaggt atgaaagcta
     7321 accctaaagg cgtggctgaa tatcttggca aaaacgaagc taaactttaa tttcttagta
     7381 taaagcctct ttacgaggct ttttcttcat ttttattctt taattgaaat tcataaattt
     7441 tctactataa ttttacacac atattaaaat ttttatttag gctaaaatat ggcaggcgaa
     7501 gatcaagaaa aaacagaaga acccacgtcc aaaaagatag aagatgcgcg taaagaaggt
     7561 aatgttccaa agtctcaaga tgcggcagct attgtaactt tgataattgg agtaactata
     7621 actttattta tgatgagttt tatgggcgag agaattgtaa atttatatag atactatcaa
     7681 agttttattg gtgttgaatt tgatttgcgt attattcaag ccattatgat taaaagcatt
     7741 tttgaggttt taattattct tgcacctatt gttttaagta ttatgattgc tggggttttg
     7801 ggaaatatta tgcaatttgg ttttattttt acaactaaac ctattatgcc aaatttagga
     7861 aaaatcaatc ctctaaaagg tttaaaaaac cttttttcat tgaaaaaaat tgttgaaagt
     7921 ataaaaatta ttttaaaagt gggtattgtt tttactatag cttttatagt tttacttaaa
     7981 tttatgcaag agcttccaag agttgagctt tatactatgg ttgcacagct tacttggcta
     8041 agagacagag ctattgtttt agcagctatt gttatagttg cttttttaat tattgctgtt
     8101 ttagatgttt ttttggtgcg ttttcagtat tttaaaggtt tgcgtatgag caaacaagaa
     8161 ataaaagatg agtataaaca aatggaagga gatcctcagg ttaaaggtag aattcgtaga
     8221 cttcaaatgg aagctgcgcg tcgtcgtatg gttcaagatg ttgcaggtgc ggatgtggtg
     8281 atcacaaacc caacgcatta tgccgtagct attcgttatg atacaagtaa agaacaagcc
     8341 cctagggttg ttgctaaagg agtggatttt ctcgctcttc gcataaaaca agtagcctat
     8401 gaaaataatg ttgtagttta tgaaaatcct cctttagcaa gagagcttta taaagcttgt
     8461 gatgttaatg atcttattcc tagggaaatg tttaaagctg tagctgaggt gctaggattt
     8521 gtttataata caaataataa gagtcgttta gctggtcaag taaaaaaagg aaactaaaac
     8581 ttttaaggtg ctttagttcc tattttgtta ataagctcaa gaaccgattt ttgagtactt
     8641 gtatctgctg tatcaacttt aaaatatatt tctactctat tattttctag agcttgtgga
     8701 tttccattga taggattatt aagcccgtag cttttaatgc taatgttttt taaatttgct
     8761 ccaccttcta taaaatattt taatacattt tccgctcttt ggtaggcgag ttcataactt
     8821 cttataatag agtcgctatt gtctgtatag cctctaattt ctatttttgc ttgaggtggc
     8881 aaatatgttg ttagttcagc catacgtttt aaataatctt gtatatcagc tgaaacgatt
     8941 tgagcgctac ctctttcaaa ttcaacttta gatggaaggt taagagcaac ctgattgtcg
     9001 ctttgatcta gagccgcttg aagacgtttg atagtttctt gctgcgtcat agtcatttgt
     9061 tttaatgatt tgagttcatc actttcttct tttgctgcgc ctttatattt ttcttgagtt
     9121 ttactctctt ctttgactgt ttgagtagag gtgtaatcaa agattttaac aaattcagtt
     9181 tttaaagcct ctactttagc aggatttgtt ttagaaattg cccaaagagc aataaaaagt
     9241 gccaaaagca aacttagaaa gtctgcataa ggtacagccc atttttcacc tgcaggacat
     9301 tctggacatt tatgtttctt ggccattttt aacctttatc aaattgtgaa atttttggat
     9361 catcgtgact taagaaatta aaaagcttag cttccaaatc tctagggttc gcaccttctg
     9421 caattccttt tatggcttca gtgatgacaa tttgctcttt tacaagatcc attccgttag
     9481 ctttcatttt tcttccccaa ggggcaaaaa gcgcataagc accaaaaatc ccagtaaccg
     9541 tagctgtaaa agcacctgaa atacccgctg ccattgcctg aggattatct agcaatttaa
     9601 gagctagaat aagaccaaaa accgcaccaa caagtcccat agtagggcaa gtttctccaa
     9661 atactatcca atattctgcg cattctttat aatgctcttc aagttgttcg gtttgtattt
     9721 ccatgctttc gtgaatttct tcaaagcttt taccatctac aagcatcatc atagcatttt
     9781 ttaaaaattc attttcaatc tcattggttc ttgattctaa cgctaaaaga ccatctcttc
     9841 ttgcaataat agcaaattct attaactggg ctatcctttc aggtagattt actccagaac
     9901 ctttaaagac aactttgagt tctttataag ctgcttttac aattttttta tgtgtagaag
     9961 tcattgcaca aaatgcagcc gttggcataa ctataagaaa ggaagaaaga tgcacaacat
    10021 gtaaaggatt accaccttct agtatatctc ctactgaaat actagtaact gcaagcacca
    10081 ttcccagtat ggttgaaaga tccattaaat atctccttga ttattttaaa tcgccccaat
    10141 ttttggcgat acttgagctt gtttttaatt ttacttttaa ttttactata ttttccataa
    10201 tatctctagt ttttttcaca aaattttcac ataaatcatc ttttacttca aaaattaatt
    10261 catcgtgaat ttgcaaaata agctttttat cttcatttaa ttccttgttg atttctaaca
    10321 ttgcaagttt gattacatca gctgctgagc cttgtaagat tgaattaatg ctttctcttt
    10381 catacatggc aatttgcata ggttttgcgt tttcaaaatc aaaataacgc ttgcgaccgc
    10441 ttaaagtagt gataaaacca ttttgtttag ctttgttttt aactgtttca aaatatttct
    10501 taatactagt aaaattttca aaatattttt ctatgtaaga tttggctaaa tgagcttcta
    10561 tttttaaatt ttgacttaaa gttttatagc ccatgccata aataagtcca aaatttatac
    10621 tttttgcaac acttctggtt tcataattgc tttctccaaa aatcattata gctgttcttg
    10681 catgtatatc ttcatcgtta gcaaaagcat ttaaaagttt ttcatcttcg ctaaaatgcg
    10741 caagcattct cagttcgatt tgagaataat caagagagat aaaactaaat ccatctttag
    10801 ctacaaagca agatttataa tcttttgcgt attgtccgtg tgcaggaata ttttgcaaat
    10861 ttggatcttt agatgaaagg cgtcctgtag cggttccagt ctgtaaaaaa cttgaataaa
    10921 tgcgtgaatt tttatctttt aacgctagtt ttaacaaagg ttcgcaataa gtggaataaa
    10981 gtttggcaag ttctctataa tctaaaattt tggcaattac aggatgttta tctaaaagtg
    11041 catttaaaac tttttcatcg gtagaatatc ctgtttttcc tttttttcca cttggaagtt
    11101 taagtttttc aaaaagtata tcacctactt gtttaggtga gtttaggtta aatctatcct
    11161 cacaaagagt ataaatttct tcacttaaat ttttgatttc attttcaaat tttttcataa
    11221 ggatttcaag tgcatttgta tcaagcttta tgccattttc ttccatcatc ataatgattt
    11281 taatgaaatc aaattcgcag tttttagcaa gttctagcaa aggagtttca agatttttta
    11341 aaaaataaag ataaaatctt aaagtgatat aagcatcttc cgcagcatat ttgcaagctt
    11401 tttcaagctc tacacttgca aaattttctc cttttttaac aaggctttca aaatgtaagg
    11461 tttcataatt aaaaagtctt aaagctaaat catccatatt tactcttaaa gaaggatttt
    11521 taagccatgc taaaatcatt gtatctgcgt atttttgagg taaatttaat ccaaaattgt
    11581 tttgaatgat tttaaaatca tatttgagat tgtgtcctat aacaaaatga ttaaagatta
    11641 cttctatagc ttttttggcg ctttgcaatg agatttgctc acctactcca agatagttat
    11701 gagttaaagg cacgtaaaaa gcttcatttt cactcatgca aaaactaaaa ccaacaattt
    11761 ttgcttcttt tgtatcaagt cctgtggttt cggtatcaaa agcaataata ctttctttat
    11821 caagggtatt taaaatttca aaaagtttgt tttcatcttg tattaaagtg gctttaaaac
    11881 ctaaattttt atctttatta tcaggatttt gacgcagttt tttaagcaaa gtattaagtt
    11941 cgtaatgttc taaaatttca agtattttta aaagaggttc ttcatcagga taagttgctt
    12001 tttctataag atcttgcact tctaaatttt catacaaaga ggctaatttt ttgcttaaaa
    12061 atgcattttc cttaccctct aaaagcaaat tacgacttct ttcgttgcgt actagggtta
    12121 aattttcata aattccttct atactaccaa attcatcaag taaggtttta gccccttttg
    12181 cacctatacc tttaacgcct ggaatattat cagaactatc tccgcaaaga gctaaaaaat
    12241 ctctgatttg atgaggtttt actccgtatt tttctaaaca cgctgcttca tcatagtcgt
    12301 ttttagaaat aggactgtaa atgcttgttt taccatcttt tatgagttga taaagatctt
    12361 tatcttgagt gataatgcgt acaaaaatat ccctatcttc acaagttctt acaaaagaag
    12421 cgatgatatc atcggcttca taaccttctt gagaaacgct tataaaaccc attttttcta
    12481 tcatctctat gcaaattgga atttgttcta gaagttcagg tggtggtgga gtgcgatttt
    12541 gtttatagtt tggatcaatt tcgctacgaa aagtttttcc tttggagtct aatgcaaaaa
    12601 caatataatc acttttatgt tcatttttta agctataaat aaaatttgca aaaccgctaa
    12661 tcattccact agcttgtcct tgtgaatttt taaaaccttt taatgcgtag taaagtctga
    12721 aaaaaaatcc aaaagtatcg ataatagtta aagttttcat aataatttct tctttaataa
    12781 aatatatttt taagctgtat tatttcaaaa ttttgcttaa aatgtctaca atttaagatc
    12841 tttaagcaaa aacactgcaa tttttagcca taattacaaa ttatttataa aaaaatatat
    12901 taaaatataa ggataatgta atgacaaatc agcaaattga tggaattgcg gataagaatt
    12961 ttaatacacc tgaaggtagg aaagttttta aaaaggcagt tttttcttgc tggttgggaa
    13021 ctgctatgga atatgcagat tttgcacttt atggtttagc agctgcaaca attttttcag
    13081 aagtattttt tcctgagcaa actccagtaa tcgcactttt gcttagtttt gtaacttatg
    13141 gcataggttt tattgcaaga cctattgggg ctttgttttt tggttattta ggtgataaac
    13201 atggaagaaa aaatgttatg atgagtactg ttgctttaat gggaatttca actactctca
    13261 taggttttat tccaagttat gcagtaattg gtgtttgggc gcctatttgt ttggttatat
    13321 tacgttttat gcaaggtttt ggtgcaggag ctgaactttc aggtggaaca gttatgctag
    13381 gagaatatgc tcctagcaag agaagagggc ttgtttcttc tgtgattgct ttaggatcaa
    13441 atagtggaac tttacttgcg tcttttgtgt ggcttttgat ggtgcaaatg gatgaggcaa
    13501 gttttaaaga atggggttgg agagttcctt ttatgggaag tattttaatc gctctttttg
    13561 ctgtatatat tcgttttcat gtcaaagaaa cccctgtttt tgaaaagcaa aaaaatgaaa
    13621 tgatgaaatt gcgtcttaat aacgaaaagc atatgaaaaa agatgaaaga agtttttggc
    13681 aaagaagtcg tgctttttgg actatggtgg gcttaagaat aggtgaaaat ggaccttctt
    13741 atcttgcgca aggttttatt gtaggttatg tgactaaaat tttactttta gacaaatcag
    13801 tagctactac agcagtgatg atagcttcat tggtgggttt tttggttatt cctttggcag
    13861 gttatttaag tgatagattt ggaagacgta ttacttatag aatgttttgt ttacttttga
    13921 tgatttatgc ttttcctgct tttatgcttt tagatagtaa aaatgaaatt attgtgattt
    13981 taactattat tgtaggtatg tctttagcat ctttagggat ttttggtgta caagcggctt
    14041 ggggtgtaga actttttggg gtaaaaaacc gttatacaaa aatggctttt gctaaggagc
    14101 taggttctat tctttcagga ggaacagcgc ctatggtggc ttctgctttg cttgcgtatt
    14161 atggcacttg gtggcctatt gcgacatatt ttgtattaac tgcaggtata ggttttgtga
    14221 ctacattttt tgcgccagaa actagaggta gagatttaaa taaaatagaa gatgcgatat
    14281 gagacttatc ttagacacag atataggcaa tgctattgca ggagcaaata ccgatgatgg
    14341 tttagcgctt gctttgattt tggcatctaa agaaatcaaa cttgaaatgc taagcacggt
    14401 ttgcggtaat gttccaagcc ttgttgccta tagtgtggct aaggatttat ttaaacgttt
    14461 aaatttaaat attcctgttt atttaggagc gaatgaagcc ctaaaagaac caagtaaagc
    14521 ttggcgtcaa agacttgatg aaagtgtaaa aaattttaaa cttgaatatc tttgggaaaa
    14581 tataaaaagt cccgaaattt tagaaaatat aaatcctgat gcgattttta aaatgggtga
    14641 gttggtgagt aaaaatccta aagaaatttc tatttgtgcg ataggacctt tgacaaatat
    14701 cgctatgact atgaaaattt ttaaagattt tgatataaat cttaaagagc tttttattat
    14761 gggcggtagt tttgatatgc cttattatac taaagataca aattttggtt tcgatcctga
    14821 ggcggctagt atagtgttaa attcaagagc taaaattaca ctcgtgcctt ataatgcaac
    14881 catgcagact ttattaacac acgaggattt aaaagagttg caaggtaaga atattttatg
    14941 tgattttatc gttgaaactt taggtgtttg gattgattat gcttctaaaa cacgtggtac
    15001 aaagggaact tggatacatg acgctttaac gatagcttac gcattagatt ctagtattgc
    15061 agattttgat gagtgttatg ctgatgttat ttgcgatagt tctttggcaa gaggtatgag
    15121 ttggcgttgt tttaaagagc caaaaatgag tatgggggtg gatttaagca ctaaaaattg
    15181 tgttaaaatt ttaaaaaatg tagataatac aaagctttta aaacttataa aagagaggct
    15241 tttaaaagga gtttgctatg aaaattatga aagcataacg acttaatttt ccaagtaaga
    15301 taaaaaatat agtttttaaa aaagaatatt tcgcaaaacc aagtcccaag gcaaaaagat
    15361 ctcccaccaa aggtaaaaaa gtaaaaaaag caaatatact tccaaattta gcaaaattag
    15421 cattgaaatt ttctaatttt ttcaaggatt tgctaaagta tttttctaaa attttttgct
    15481 taccaagata agccaagcca taagtactta aacttcctaa ggtattaccc aaagtagcta
    15541 cgataagcac taaatttgga ttaaaatcaa gttttataaa gcctaaaaca aaggcttcgc
    15601 ttgccaaagg taatagtgtg cttgaaagaa aacacactat aaaaagtcct aaataactta
    15661 tatcattata taaaaaatca aacataaaat tatgattttt gtgtattttt aagctctaag
    15721 tctagataat atcctgtgta agaacgggtt tttttgtgtt ctttagcgac tttttccacg
    15781 cttcctgtgc ttataacttt tccaccttta actccgcctt caggccccat atcgatgata
    15841 taatcagcat ttttaatcac atccaaatta tgctctatta caaaaaccga atttttaaga
    15901 tcaaccaaat gttgtaaaac taagatgagt ttattgacat cttcaaaatg cagtcctgtt
    15961 gtaggttcat caagtatata aagcgttttt cctgtatcgc tacggcttag ttctttagca
    16021 agtttgattc tttgtgcttc acctccactt aaggtggtgg cattttgtcc tagggttaga
    16081 tagtctaaac ccacttttac tagagtgtct aatttttgct tgattttagg aacggctgta
    16141 aaaaattcac tcgcttctaa aacactcata tttaaaattt cactgatatt tttgccttta
    16201 tatttgattt ctagcgtggc atcattgtag cgtttgccct gacaagtatc acaaactacc
    16261 ataacatcag gtaaaaaatg catttctatt ttgatttctc catctccgct acacttctca
    16321 catcttccac ctttaacatt aaaagaaaag cgtcctgctt tataaccacg cattttagct
    16381 tctttagtgg cggcaaaaag atttctgatt tcatccatag cacctgtata ggtggcagga
    16441 tttgaacgtg gtgtgcgtcc aattgggctt tgatcaagat aaatgacttt atcaagtttt
    16501 tcaagtcctt ctatttgcac cccaccaagt tttttaactt ttttagcgcg gtttaattcc
    16561 tcttgtgcaa aaggaagtag ggtttgaagt atcaaagaac tttttccaga acctgaaact
    16621 cctgttatag cgactaaatt ttgtaaagga aattttacgc ttaaatcttg gatattgtta
    16681 atatttacat ttttaagttc aagccattct ttttgtgctc tgttttgaag ttgtgaaatt
    16741 tgttttttac cattcatata aagtgcagtt tcgcttttgc tttttaaaag ttctttataa
    16801 gttccactaa atacaacctc acctccaaat tttcctgctt ttgggccaat atctacaata
    16861 aaatctgctt cttctatagt cattttatca tgctctacga caattagggt attgcccttt
    16921 tgttgtaaat ttcttaaagt tttaatcagt tttgcagtat ctctttcatg aagtcctatg
    16981 ctaggctcat ctaagacata catcactcca cttaaaccac tgccaatttg tgaagctatg
    17041 cggattcttt gtgcttcacc cccactaatc gttcttgcat cgcgccctaa ggaaagataa
    17101 cctagcccca catcatacaa gaaaaacaat ctttcgttga tttcttttag gataggttta
    17161 gaaataagtt tttgttgctc gcttaaatag gaaaaatttt tctcatctgc aaaaaaggcc
    17221 gtactatctt ctatgctcat atctaaaatt tcacccaagc cttttttggc tactttcacg
    17281 gctaaacttt cgggttttaa acgatgccca ccgcagtctt tacaaatttt ttcactcata
    17341 tattcggcta aatctttttc atcttttagc atttcataag ccattttaac cacgccttca
    17401 aaggtgcgtt ttagacgatt tcttttccaa agaaattcta tagttttggc attaccatac
    17461 aatacaagac gtttttgttc ttcgtttaat tgcataaaag gtattttgat aggaatttca
    17521 ttttgttcgc aaaaggcgat taggaattta taataataac ttttgttaaa accatacatg
    17581 attttaacag caccattttc gaggcttaaa ttttcatcga taattttttt catatctaaa
    17641 gtataacgaa tgccaagtcc atcacaagct tcgcatgctc cttttggaga attaaaagaa
    17701 aagcttaaag gttcaagtgg aacaaaggaa attttacaat caaaacaagc gcagtgttcg
    17761 ctaaaatgat agtgtttatt aaggtttatt tcctcatgat ttaaaacttc tatttctatt
    17821 tctccaaagc tttcttgtaa gcctttttct atatcgcttg caagacgaga aagtaaatct
    17881 tcttgaattt caagcctatc tatgacaagt ttaatggtgt gttttttggt tttggccagt
    17941 tcaatttctt catcaagtct tactaaaact ccatcaattt gagctcttac atagcctttg
    18001 ttgcgtaaat tttcaagtaa atctgcataa gttccttttt tttctcgtat gagtggagcg
    18061 tagatgatga tttttgcacc ttttggaaat tttaaaattt cactgactat atcacttgca
    18121 ctcatagatg agattttttg tccacattga tgacaatgtt gaatgcccac tcttgcatat
    18181 aaaagtctta gataatcata aatttcagtg atggttccta cagtagagcg tgggttttta
    18241 gaagtggttt tttgatctat agcaatggct ggggttaaac cttcgatttt atcgacatca
    18301 ggtttgccta ccttatctaa aaattgtctg gcataagcac ttaaactttc tatataacgg
    18361 cgttgtcctt cggcataaag agtgccaaaa gcaagggttg attttccact cccactcagt
    18421 cctgtaaaaa caatgagttt gtttttggga atttcaaggt ggatattttt taggttattt
    18481 tctcttgcac caatgatttt tatggtatcg ttcatagtct ttcctaaaca ttaaataaat
    18541 ttaagatttt agcataataa tattaaaaga acttggataa atccaagtta aaaatttata
    18601 agatttagct tattaagtaa agagtgggtg gttccaagta ttgataaggc atatacgcaa
    18661 agtaaaattt ttctatgagc tgaaatatgc attttttcta tgattttaat tcctataaaa
    18721 actccaacca tagaagctat acctactagt attcctttat gaataacttc agagtctata
    18781 actccagaat ttgaaaaaga tataatacca gagactgaag caaaaataac aaaaaacaag
    18841 gataaagaaa caactttttt actatcatag cctaaaaaat aagctaaaat cggagcaatt
    18901 aaaagtccac caccaattcc caaagaaata gcaaaaatac cagtaaaagc tccagcaata
    18961 aataaaatga cattctttac ccaaacgctt ctttgatttt gcacaatgtt ttctttaatt
    19021 ccaaaagcat atttgataaa aaatatacaa cttaccgcca aaaatacgct agtaagagct
    19081 acatcactta aagcttttaa aagcattccg ctaaagcttg cccctatgag tcctccaaaa
    19141 cctatcataa taccatcttt aagatttaga ttttttttct tataattaat ataagagcca
    19201 aaaactgctg caaaaatcat ttgcaatact gaaattccga tagcatggtg agcacttgct
    19261 ccaagtgcga acatagaagg aacgataatc atacctccac caatgccaaa aagtccagaa
    19321 gcaatacctg aaatgattcc tatgattaga taaggtaaat ctgtgatttc catagctttt
    19381 cctaaaaaat attaaatatt tcaaatacgg aataatttta tcttattaag ctaagtatta
    19441 tcttagtttt ttataacaat agaatatttt ttggtaactt taagcatcgt aaaaatgttt
    19501 caaaatatta taaaatataa agattttata at
//
LOCUS       DAEDTT010000017        18690 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.017, whole genome shotgun sequence.
ACCESSION   DAEDTT010000017 DAEDTT010000000
VERSION     DAEDTT010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18690)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18690)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18690
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.017"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            18..1199
                     /locus_tag="KLC54_000485"
     CDS             18..1199
                     /locus_tag="KLC54_000485"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HBD9176888.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIVVTSCATESINWVLKGVYFDHILDKERNEVIISSVEH
                     PAVAAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
     gene            1209..2180
                     /locus_tag="KLC54_000486"
     CDS             1209..2180
                     /locus_tag="KLC54_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HBD9176889.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(2204..4087)
                     /locus_tag="KLC54_000487"
     CDS             complement(2204..4087)
                     /locus_tag="KLC54_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HBD9176890.1"
                     /translation="MKKIIFSLCFFILYLGAQEFKFIDANISKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNPEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     LFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYTKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(4084..4719)
                     /locus_tag="KLC54_000488"
     CDS             complement(4084..4719)
                     /locus_tag="KLC54_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HBD9176891.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRVGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            4879..5574
                     /locus_tag="KLC54_000489"
     CDS             4879..5574
                     /locus_tag="KLC54_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HBD9176892.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            5678..6049
                     /gene="secG"
                     /locus_tag="KLC54_000490"
     CDS             5678..6049
                     /gene="secG"
                     /locus_tag="KLC54_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HBD9176893.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPTT
                     PNTNSIAPSAPQLPSDVNSSK"
     gene            6059..6622
                     /gene="frr"
                     /locus_tag="KLC54_000491"
     CDS             6059..6622
                     /gene="frr"
                     /locus_tag="KLC54_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HBD9176894.1"
                     /translation="MIMLNEIFNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHITV
                     DYYGTQTPLNQVATVLASDASTINITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDTYTTKIDESVKSKESELLKV"
     gene            6625..7233
                     /gene="pyrE"
                     /locus_tag="KLC54_000492"
     CDS             6625..7233
                     /gene="pyrE"
                     /locus_tag="KLC54_000492"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HBD9176895.1"
                     /translation="MNLEQIYKDCGAYLEGHFLLSSGKHSQFYLQSAKVLEDPKLAAK
                     LCDELAKIIASYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKGEKFIICEDIITTGGSALESAKIIESLGGIIVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            7234..7644
                     /locus_tag="KLC54_000493"
     CDS             7234..7644
                     /locus_tag="KLC54_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HBD9176896.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYVPILYLFYFLLGSKEAFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFIRKDRLNLHDILTQSCIATKA"
     gene            7658..8680
                     /locus_tag="KLC54_000494"
     CDS             7658..8680
                     /locus_tag="KLC54_000494"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HBD9176897.1"
                     /translation="MQRKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            8667..10040
                     /locus_tag="KLC54_000495"
     CDS             8667..10040
                     /locus_tag="KLC54_000495"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HBD9176898.1"
                     /translation="MMISKTSLALLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDTEDIEFLRKQGIFDTEFLDFLSSFKFKGEIYAMRE
                     GEVIFPNEPLLCVKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQEGGVRIDSGNLLELSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLELVYKEKRLLKKSSLNTIQDYTKEQISKLDESFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(10009..10557)
                     /locus_tag="KLC54_000496"
     CDS             complement(10009..10557)
                     /locus_tag="KLC54_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HBD9176899.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDEKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDNALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNDEEV
                     SFLKQSALNYVDFKNEFLKDLQ"
     gene            10646..11275
                     /locus_tag="KLC54_000497"
     CDS             10646..11275
                     /locus_tag="KLC54_000497"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HBD9176900.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            complement(11295..12482)
                     /locus_tag="KLC54_000498"
     CDS             complement(11295..12482)
                     /locus_tag="KLC54_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HBD9176901.1"
                     /translation="MKMDYKEQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGIKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELIKEFDFCKKRKGLGF
                     MQGLSLDKNVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(12486..13331)
                     /gene="argB"
                     /locus_tag="KLC54_000499"
     CDS             complement(12486..13331)
                     /gene="argB"
                     /locus_tag="KLC54_000499"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HBD9176902.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATTEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIITPIGMDENFNTYNINADDAACSIAKALRAEKLAFLTDTAGLYEDFNDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            complement(13335..13781)
                     /locus_tag="KLC54_000500"
     CDS             complement(13335..13781)
                     /locus_tag="KLC54_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HBD9176903.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     DLSVVAVLGEEIVGSILCGHDGRTGGFYHVCVHKDHRKKGIAHEMTKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            complement(13791..14819)
                     /locus_tag="KLC54_000501"
     CDS             complement(13791..14819)
                     /locus_tag="KLC54_000501"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HBD9176904.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHEFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFNSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYGLASHRHTPEIEEHLSY
                     AAKEKITLQFTPHLVPMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            complement(14901..18528)
                     /gene="vvfC"
                     /locus_tag="KLC54_000502"
                     /pseudo
     CDS             complement(14901..18528)
                     /gene="vvfC"
                     /locus_tag="KLC54_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter serine protease VvfC"
     gene            complement(18568..>18690)
                     /locus_tag="KLC54_000503"
     CDS             complement(18568..>18690)
                     /locus_tag="KLC54_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA modification methylase"
                     /protein_id="HBD9176905.1"
                     /translation="LSTLGKYRILEQKYNTFRASRNLKNRNIHLHEQLYILVKN"
BASE COUNT         6391 a         3194 c         2707 g         6398 t
ORIGIN      
        1 aaattaagga ttttaaagtg aaagtatatt tagataacaa cgcaacgaca atgcttgatc
       61 ctaatgctta tgagttgatg ctaccttttt taaaggatat gtatggaaat ccaaatagcc
      121 ttcatcaata tggtagcgca acacatcctg ccttaagaga agctttggat aaactttatg
      181 caggacttgg agcaaatgac ctagatgaca tagttgtaac ctcctgtgcg acagaaagca
      241 ttaactgggt gcttaagggt gtgtattttg atcatatttt agataaagaa cgcaatgaag
      301 tgattatttc tagcgtagaa caccctgccg ttgctgctgc tgcttatttt ttaaaaagtc
      361 ttggagtaaa agtcatagaa cttcctgtaa atgaagaagg ggtttctact gtagaagatt
      421 tgcgtaaagt gattagcgat aaaacagcgc ttgtaagtgt tatgtgggca aataatgaaa
      481 caggtatgat ttttgatatt aaagcgatgg cagaacttgc gcatgaattt ggtgctcttt
      541 ttcatacgga tgctactcaa gcagtaggta aaataaaggt taatttaact caagtaggag
      601 ttgattttgc ttcattttcg gcacataaat ttcatggacc aaagggtgtg ggtggacttt
      661 ttataaaaaa aggacttaaa cttactccac ttttacacgg tggagaacac atgggtggtc
      721 gtagaagcgg aactttaaat gtaccttaca tagtggctat gggcgaggct ttgcgtattg
      781 caaatactat gcttgatttt gaagattctc atatacgccg tttaagagat aaactagaag
      841 atcaaatttt agctttacct gatacaacag tggttggaaa aagggaacac cgtgtgccta
      901 atacaatctt agcaagtatt aaaggcgttg aaggcgaagc gatgctttgg gatttaaata
      961 aaaatggtat agctgcaagt acgggctcag cctgtgcaag cgaagcttta gaaagcaatc
     1021 ctattatgga agctatcggt gcggaacatg atttagcgca cacagcttta agactttctt
     1081 tgtcacgttt taacactgaa gaagaaattg attatgcagc aaaacaaatt aaaaatgcaa
     1141 cacagagatt aagagcaatt tcttgcactt atgcttataa tccaaataat tacaaataag
     1201 gatgaaaaat gggaaaaaat agtttaattg gtggatccat ttgggatgag tattcacaaa
     1261 aagttcaaga tagaatgaat aatcctcaac atatgggaga atttagtgaa gaagatgcta
     1321 aagcacgcaa tgcaaaattg atcgtagctg attttggcgc agaaagttgc ggcgatgcgg
     1381 taagactttt ttggcttgta gatgaaaaaa ctgataaaat tatcgatgca aaatttaaaa
     1441 gttttggttg tggtacagct atagcaagta gtgatactat ggtggatctt tgtataggaa
     1501 aaactgtaga tgaagcagta aaaatcacaa atttagatgt ggaatttgct atgcgtgata
     1561 atccagaaac tccagctgtt ccacctcaaa aaatgcactg ttcggttatg gcttatgatg
     1621 taatcaaaca agcagcagcg cattataaag gtataagtcc tgaagatttt gaagatcaaa
     1681 ttatagtttg cgagtgcgct agggtaagtc ttggaactat taaagaagtg attaaactta
     1741 atgatttgca tagcgtagaa gaaatcacac aatatactaa agcgggtgct ttttgtaaat
     1801 cctgtatcaa accaggcgga catgaaaaaa gagattatta ccttgtagat attttagctg
     1861 aaactagagc tgaaatagat agagaaaaac tcaaaaatac aatgaaaagt gatgtggctt
     1921 ttgatgaaat gaccgtagtg ggacaattaa aagcagttga aagtgtttta gatgctgaaa
     1981 ttcgccctat gcttcataat gatggtggag atttggaagt gattgatata caaaaggctg
     2041 aaggtgcagc aattgatgtt tatattcgtt atcttggtgc ttgtagtggt tgttctagtg
     2101 gaagtggtgc aacactttat gctattgaaa caattttaca agaagaatta agtccaaata
     2161 tacgcgttat gccagtttaa aaaaatagca agataaaatc ttgctatttt atagcttttg
     2221 cttgcaaatc aaggggtggt aaattttcta tataaatact acgacttggg aaagcaaagg
     2281 ttaaaccatt tttttcaatt atacgcataa actcaagcat taaactttgt ctagcttctc
     2341 taaaatcttt tccgcctatt tctttggtat aaaaataaag ctctatatta atactactat
     2401 ctgcaaattc acttaaagcc acataacaag catttttata gccttctaaa tcattaatag
     2461 atacaagatt ttgacgatat tttgttgtat gatcgccata ttttaatgcg ctatcctcat
     2521 cgtgagctac taaatcactt gtatgcaaaa attctcttag atcttttaca cattgttcta
     2581 gtttttcagg agtagcatca taaccaacac ccaaatacat tctaacatgg cgacccatgc
     2641 gtcttttgct ccaatttttg atattagctc ccataatagt tgaatttggt aaaaatacaa
     2701 gacaattatc aaaagttcta atagtagttt ttctaagtcc tgtttcaacc acggttcctt
     2761 ctatgcctga aacctctacc caatctcctt gattaaagct attatcaaaa agtaagagta
     2821 tagaagcaaa gaaatttgca atgatatctt tcgccgctaa agcaacagct aaaccaccaa
     2881 ttcccaaaga tgcaataata gccgaaatat taaaaccaag ttgagcaaga atatataata
     2941 aagctatgat aataatgaca aaatataaaa ttttaataat taaatttaca acttcttttt
     3001 ttccactttt ttgagcaagt ttagaaacca ataccacgcc ataaccatca agcattctta
     3061 aaataagcca tgcaattaaa actgcataaa ctatatgaaa aaaattactt aaatttacac
     3121 tcaaaggtgc aggataagtt gctatagtaa gacaaagaga aatagcatag acaatcaaca
     3181 agaaacctac gggtttttta atattctcaa taaaaatgac tttaatatca tctacatcat
     3241 ttttatttct ataaaaaagc tgaacaagga aaaaatatac tatatttgca aaaaaacgtc
     3301 ttaaagatat aaaaaatact aaaaccaaag cagaaattac tatttttccg atattaacaa
     3361 aacttacccc aattgcctca tttatacgat ctatccaaac ttgaagctcg agtaatgaaa
     3421 aaatataatt actttcaagc aaatctgcat ttgagcgtaa atacttaaga atttcagaat
     3481 aagaatctac agcattactg atatatcttt cttttagggt aattttttct aattcttctg
     3541 gatttgtaat tttgctttta aaactatcta aattaacatt agaagaattt tgtaaatttt
     3601 ccattgcctt atcaacagta gcaatcaaat cttcactgct tgctgtattt ttaaaaagtt
     3661 tttccacttc aaacaaagaa gaataaaaac tttccacaat attaaaataa actagattaa
     3721 gagtagcatc tgtataaata taaggcttat taatattctt tttttgaaca tctagtaatt
     3781 tttcttttgc ttttaaaaat ctagccactg cctcttcatt aatcttttgt cctactatca
     3841 tatcgggtat ttttgctaaa atagtctttt tgtctttttc aaattcactt aaaataccat
     3901 taaaagtgct tgaattttca tcattgtttt tcttaaattc tttaatttga ttgttaagat
     3961 caacatattt ttcaactaaa gcataaattc cttcatcctc tttgctaata tttgcatcaa
     4021 taaatttaaa ttcttgtgct ccaaggtata aaataaaaaa acataaacta aaaataattt
     4081 ttttcattga actttcctat cctgtattaa agtaaaaatt tttgctttaa aatcatactc
     4141 ataaatttca cctgtctcta taatataata ccaagcatgt acttctattt ttccttcatc
     4201 taaagcttct tgcacgcctg gataagtaag tatattttgc aaagaattta ctaaatttaa
     4261 tttttctgta agccatgaac gcatagccaa atcgtctctt gcaaaaatca tcacatcttt
     4321 ttttatcgga tctaacatag taagccattt tttcacgtta ggaattttat ttaactcttc
     4381 atcagaataa taaagagcat tgcaacctcc acaattacta tggccacaaa cgacgatatt
     4441 tttaatatgc aatgaattta aagcatactc tattgctgaa gttgtcgcca agtaatcttc
     4501 tccaacgcga taaggtggaa ctatatttgc aatatttcgt attacaaaaa gctcacctgg
     4561 acccgtatta gtgatcaaat ttggaattac tctagaatca gaacaaccta taaaaagagt
     4621 atggggattt tgcttatttt ttagactttc aaaaagttct tcatgctcct taaagtcttc
     4681 ttgcataaac ttaatcgcac cgctaataag attttccata aaaccaacct gaaactaaaa
     4741 tcttgaaatt ataacaaaat ttcagcaaag atttcattta agcataagat attatataaa
     4801 ttaacttttt atttagtcta atatgttaga tttcgctcaa gattttaaaa aatctaacaa
     4861 ttttgcaagg agaattttat gagtctttat gatagagact actcaagatc aaaagaattt
     4921 gaaaatacac gctcaagcga attaagtatt tttattaaac aaacttatca actttttgct
     4981 gcttcattat tagctgcaac agtaggtgcg tatgtaggaa tttttgcttt agcatcattt
     5041 tttatacaat cacaagtaac tttttggatc ctttttgctg ttgaaatcgg acttttattt
     5101 gctttgcaat ggaaaaaaag agaggctcca ttaaatcttg ttttactttt tggttttact
     5161 ttctgctcag gtttaacgct tacaccttta cttatttcag ttttagctct accagctgga
     5221 ggaattatca tcgctcaagc ttttgcttta acaacagttg cttttgcagg acttagtgta
     5281 tttgctatga atacaaaaaa agattttact gttatgggta aagctttatt tatagtatta
     5341 atcgttattg tagcagcatc tttactaaac cttttcttcc aaagcagtat agttaatcta
     5401 gctatttcag cagtagctgc aatattattt tcattttaca ttctttatga tacgcaaaat
     5461 attatccgcg gaaattatga aactccaatc gaaggtgcag tagcacttta tcttgatttt
     5521 gttaatcttt tcgtatcttt acttaatatc ttaagaagct tcaatagcag ataagttttt
     5581 gtgggatttt tctcacaaaa acttttcaag tttcaaaact tttcaagttt tatttagcta
     5641 aaataatcat ttaaaaatta acttttagga aatttcaatg atcactcttt taatcatttt
     5701 acaatttatc atcgttgtag ttatttgtat agcagtttta cttcaaaaaa gttcaagtat
     5761 aggacttgga gcttatagtg gaagcaatga aagtttattt ggtgccaaag gaccggctgg
     5821 atttttggca aaatttacct ttgtcatggg aattttactt attgcaaata ctattggtct
     5881 tggttattta tacaataaag ctagcaagga ctctctagca gagaaaatta aagtagaaaa
     5941 caacaacact actattccaa gtgctcctat tgtgcctact accccaaaca caaattctat
     6001 cgctccaagt gcaccacaac ttccaagcga tgttaattca agtaaataat taaaggaaat
     6061 gataatgcta aatgaaattt ttaacaaaca aaaaacccaa agtgaaaaat ctttagaagc
     6121 cttaaaaaaa gactttacca ctttaagaac tggaaaagtt aatacccata ttttagatca
     6181 tattacagtg gattattatg gaactcaaac tcctttaaat caagtagcaa ctgttttagc
     6241 aagtgatgct tcaactatta acatcactcc ttgggaaaaa cctttactaa aaaccataga
     6301 aagcgctatt gcagctgcaa atatcggtgt caatccaaac aatgacggcg aaagtgtaaa
     6361 attatttttc cctccgatga ctagagagca aagagaagaa aacgtaaagc aagctaaagc
     6421 tatgggtgaa aaggcaaaag tttctataag aaatatacgc aaagatgcca acgatgcagt
     6481 taaaaaacta gaaaaagata aggcaataag cgaagatgaa gcaaaaaaag cttatgatga
     6541 agtgcaaaaa cttaccgaca cctatacaac aaaaattgat gagagtgtaa aaagcaaaga
     6601 aagtgaactt ttaaaggttt aacgatgaat ttagaacaaa tttataaaga ttgtggtgct
     6661 tatttagaag ggcatttttt actaagttca ggtaaacatt cgcaatttta tcttcaaagt
     6721 gcaaaagttt tagaggatcc aaaattagca gcaaaacttt gtgatgaact tgcaaagatt
     6781 attgcaagct ataagataga atttgacagc atttgttctc ctgctttagg tggaatttta
     6841 gcaggttatg agcttgcaag agcttgtagc aaacgtttta tcttcactga aagagtaaat
     6901 aaagaaatga ctttaagacg tggttttgaa gtaaaaaagg gtgaaaaatt tataatttgt
     6961 gaagatatca ttactacagg tggtagtgct ttagagagtg caaaaatcat tgaaagttta
     7021 ggtggcatta ttgtaggttt tgcagcattg gcaaatcgtg gtttttgtgc agtagaaaat
     7081 ttaaaatctc caagaaaaga taatgcgaaa ttacctgaaa atttaccact ctttactcta
     7141 ggaaattttg aatttgaaat ttatgatgaa acaaattgtc cactttgtaa aaaagggagt
     7201 aaagctataa aaccaggaag ccgtggaaat taaatgaaaa ctaaagcaaa aattagctct
     7261 agatggctaa gatttagagc tttgcttata gatatttttc ttatttatgt tcctattttg
     7321 tatttatttt attttctatt aggctctaaa gaagcttttt taaacaacca ttttatcaca
     7381 actttatgta cttttttatt tggtttgatt caagctattt ttttaacaaa aaaggcacaa
     7441 agcccaggtc ttaaagcgta tgatttatat cttattgata taaaaacggg aaagaagcta
     7501 agttttctta gaattttact aagatatgtg atatttatta taagttttgg cttactcttt
     7561 ggtttatttg tcagttttat aagaaaagat cgtttaaatt tacacgatat tttaactcaa
     7621 agttgtatag ctactaaagc ataaagaaag gttaaaaatg caaagaaaaa gaatttacaa
     7681 tccaagttca aacgaaaccc taggagatcg taaagttttt gatggtaacc cacatggaat
     7741 tttaaatttc actaaggcaa aatatacttg ggctttaaaa ctttgggatt taatggaggc
     7801 aaatacttgg tttccaaaag aagtggatac aactaaagat gcacttgatt atcgctgtaa
     7861 tttaactgca ggtgaaaaaa gaatgtatga tttggtttgg agtcagctta tttctatgga
     7921 tagttttcaa accaataatt tagcagacaa tatcaaccct tacatcacag ctcctgaaat
     7981 caatgcggtt ttggcacgcc aagcttatga agaggcaaac cattcaaaat cttatgctgt
     8041 tatggtagaa gcgatttgcg ataatacaga tttgatttat gaaatggaaa agcatgatga
     8101 aactttgcgt gaaaaaaatg actttatttc aagcatttat gaagaattag caggcgatgt
     8161 agatgataat aaacttcttt tagctatggt ggcaaatcaa attttagaag gagtatattt
     8221 ttatagtggt tttactgcta tttacgcact tgcgcgtgca ggaaaaatgc taggttcagc
     8281 acaaatgatc cgctttatcc aaagagatga aatcacacat cttttattat ttcaaaatat
     8341 gatcaattca gtacgcaaag aaagacccga tttattccat gatgaaaata tcaataaaat
     8401 ttatgatatg tttaaaaaag ctggagatct tgagatcaaa tggggtaaat acatcactca
     8461 aaatcaaatc atgggcttta ctgatgatat catagaagaa tacatccatt atcttgtaga
     8521 tcaaagatta agtgcgatca atttagataa gttatacaat gcaaaacatc ccattaaatg
     8581 ggtggatgat ttttcaaaat ttaacgatca aaagagcaat ttctttgaaa gtaaagtaac
     8641 gaattattct aagggtagta taagctttga tgatttctaa aacttcttta gccttgcttt
     8701 gtgattttta tgaatttaca atgtctcaag gctatttcaa aaacaataaa aaagatcaaa
     8761 tttgttattt tgatatattt tttagaaaaa ttccagattc aggttctttt gctatttttg
     8821 caggtcttga agatatttta gactttgttg aaaatttgag ttttgataca gaagatatag
     8881 aatttttaag aaaacaaggt atttttgata cagaattttt agatttttta tctagcttta
     8941 aatttaaagg cgagatttat gccatgcgtg aaggagaagt gatttttcca aatgaacctt
     9001 tactttgcgt taaagctaca actatagaag cacagctttt agaaactttt ttacttttaa
     9061 gtttaaacca ccaaagcctt attgctacca aaaccaatcg tatcgtgcgt gcagctaaag
     9121 acagtaaaat tttagaattt ggttcacgca gagcacaagg aagtgaagca gccttaaaag
     9181 gagcaagagc agcttttata ggaggttgca taggaagtgc ttgtacttta gcaggaaaaa
     9241 tttataatat ccctatcaat ggaactatgg cacattcttg ggtgcaaatg tttgaaaatg
     9301 aacttgaagc ttttaaagct tatgtgaaaa tttatccaaa aaatcctgtt tttttgatcg
     9361 atacttatga ttgtctaaat agcggactta aaaatgcgat taaagttttt aaagaatttg
     9421 gtatccaaga aggcggtgtg agaatagatt ctggaaattt gcttgagttg agtttgaaaa
     9481 tcagacaaga acttgatcaa gcaggacttc aaaaatgtaa aatcatagtt tctaacgccc
     9541 ttgatgaatg gagtattaaa aaactcaaag aacaaaatgc acctattgat atctttggtg
     9601 taggcgaaag attgatcact gcttcaagcg atcctatttt tagttgcgtt tataaactcg
     9661 cagccttaga agatcaaggc ataaaaccta aaatcaaaat cagcgaaaat aacgaaaaat
     9721 caaccctacc tcattttaaa aagcttttta gggtttatga taaaaacacg caaaaaatcc
     9781 tttttgatga gctttatgtt tttgacgaaa acccaaatca agatgaaaat ttagaacgca
     9841 aagaactttt agaattagtc tacaaagaaa aaagacttct taaaaagtca tctttaaata
     9901 ctattcaaga ttatacaaaa gagcaaattt caaaactcga tgagagtttt ttagatcttg
     9961 atcgttttgt gaaatttgaa gtaaaactct cgcctaaact tcaaaatatc actgaagatc
    10021 ttttaaaaac tcgtttttaa aatccacata atttaaagcg gattgtttta gaaagctgac
    10081 ttcttcatcg tttaattcac gcacaaattt tgcaggattt ccaagtatca aagagcgtgg
    10141 cggaaatttt ttaccctttg ttacaacgct tccagcaccc actatgctat cttcttctat
    10201 caaagcatta tccatgataa cagcattcat tccgattaaa acacgatttt ttatcacaca
    10261 agcatggata acgcaattat gtcctatagt tacatcatct cctattattg taggaaaacc
    10321 agcgtctttt aactttcctt tttcatcaaa ttccctatgc caaacatgga ctgtgctaag
    10381 atcttgaata ttggttcttt tgccaatttt tataaaatta acatcggctc ttaaaacaca
    10441 attaaaccaa atactacttt catctcctat ttctatttct cctatgattt tagcgccctc
    10501 tgcaacaaaa acattttgac ctaatttagg actatgattt ttaaatttta taagcatttt
    10561 tttccttttt atttaagtat agctaagttt aactctattt caactttttt agttacaatt
    10621 tttatttaaa tttataggag aagtaatgaa cgcatttgaa caaaaaagat gtcaaaatat
    10681 ggctgaagaa attgcacaaa aagtttttat caatgaagaa ctttttaatg ctttttgcca
    10741 aattccgcgt gaaatttttt ctcctttaaa agctcatgct tatcgccttg atgctttgcc
    10801 tttggcaaat tctcaatgga ttagttcacc tttaactgtg gctaaaatga ctatggcttt
    10861 agattttaaa aatgctgata gtattttaga gataggttgt ggaagtggct atcaagctgc
    10921 gattttaagc aaagtcataa ggcgtgtttt taccatagaa cgcatagaaa atttagccaa
    10981 aaaagccgct caaactttca gagaattaga actttttaat atcaatgtaa aatttgatga
    11041 tgggcaaaat ggctggaaaa attatgctcc ttatgatagg attttatttt ctgcttatgc
    11101 gacacaaatt cctgaaattt tactcgatca attaagtgat gacgggattt tagtcgctcc
    11161 tattttacac aatggcaaac aattcatcac acgccttaga aaaaatggca caaatttaca
    11221 aaaagaaatt ttagaagaat gtttatttgt gcctatagta gatgggaaag aataaacttt
    11281 ttttacaaaa tttattaaaa actctttaga gcctttctta acttttcact catttcatca
    11341 atatgttctt tttgcaaaat caaaggaggt aaaaatctca aatcattctc cccgcaactt
    11401 atcagtaaaa gtgcattttc ttggcatttt tgaatgacct tagctacttt tacattttta
    11461 tcaagactca gcccttgcat aaaccctaag cctttgcgtt ttttacaaaa atcaaattct
    11521 ttgatcaact catctaaact ttgctctaaa taaggcgtga gtttattgac attttctaaa
    11581 attttttctt ctttaaaaat ttcaaaaacc gcattcactc ctgcacaaac caaaggattt
    11641 cctccataag tgcttccatg atcacccgct tctaaagaat tgcttgctac tttttgattt
    11701 attacaaaag cacccacact aagcccacaa cctaaggcct tagccgaagt catgatatcg
    11761 ggtaaaattt gcgcgtgctc ataggcaaaa aattttccac ttctacccat gccacattga
    11821 atttcatcag cgattaataa tatatctttt tcatcgcaaa gctttcttaa ggctttgtaa
    11881 aaatctttat ttgcaggatt tatcccacct tctccttgca cgctttctaa gataatagcg
    11941 caagtttttt cattcaccaa tttttcaacg cttgaaatat cattatattt tgcaaattta
    12001 acccctgaaa ttaaaggttt aaaaggcttt tgatattttt cattagcagt aagcgataaa
    12061 gcccctaaag tacgcccatg aaaagaatgc ttaaaagcga taaattgtcc acccttaata
    12121 cctttgttaa aggcgtattt tctagctgtt ttcatcgctc cttctatact ttctgtacca
    12181 gaatttgtaa aaaaaacacg ctctaaagca ctagctttgg ctaaattttt agctgcagcg
    12241 gctatgtttt cattataata taaattgcta gtatgcaaaa gcttatccac ttgcgctttg
    12301 attttggcat taaatttagc atgattatat cctaaagcac aaacacctat gccgcttgaa
    12361 aaatcaagat attttttagc cttatcgtca aaaagataaa ccccctgccc tttttctaaa
    12421 actatatcaa aacgcttata ggtagggata atatgacttt gttctttata atccattttc
    12481 atcctttaac ccaccaaagt acctatacct tcatcggtaa aaaactcaag caacaaagaa
    12541 tgtttcacac gcccatctaa aatatgtacc tttttgactc cattttcaca agcatcaatg
    12601 caagatttta attttacatg cataccacct tctattttgg gggctaaaat tttagcttgt
    12661 tcaaggctga ttttagaaat caaagaattt ttatcattaa aatcctcata aagccctgca
    12721 gtatcagtta aaaaagcaag tttttcagcc cttaaagcct tagcgatcga acaagctgcg
    12781 tcatcagcgt tgatattata agtattaaaa ttctcatcca taccaatagg agtaatgata
    12841 ggtaaaaaat ccttttctaa aagctcttct aaaattttag aatttacctt ttgtatcgtg
    12901 ccaacaaaag ctaaattttc atcttttttc acacattcta aaagcgcgcc atctttacca
    12961 caaagcccta tggctttaac tcctaaattt tgcaaactat ggactaaatt tttattgata
    13021 tgatttaaaa ccatactggc tacttcagta gtggctttat cactaactct aagaccgttt
    13081 ttaaactcac tctttacgcc taatttttca cacatagcag aaatatcttt tcccccacca
    13141 tgtacgatga taggctttaa acccacaagt tttaaaagag ctatatcttg catcacgcaa
    13201 tgctttagct cttcattttc catagctgat ccgccgtatt ttataagtat aatcttggaa
    13261 ttaaatttgc gtatataagg caaagcttcg attaagacat tggctttttc taaatatttt
    13321 tgcatgatca ttccttaagc attaaagctg gtttgattat actcatttaa agaaagatcg
    13381 taataattcg catcctctct taaagtaaaa ccataatgtt tccaaaactc attgcctaaa
    13441 tcattgtttt taaaagcgat taaggcgatt ttattgatct tttgagcttt taaggcctca
    13501 agacaaaatt ttgtcatctc gtgtgctata cccttttttc tatgatcttt atgcacacat
    13561 acatgataaa atccccctgt gcgtccatca tgcccgcaaa gtatgcttcc tacaatttct
    13621 tcaccaagca ctgctacaac actaagatct gggtttctat ctaaaaaatt ttctatattt
    13681 tctttgctat catcaatgct tcttatccca aagcctttta tctcgcacca aagcttataa
    13741 acggcttcat aatcgctttt ttgcatagct cgtattaaca tttttatcct ttacaaattt
    13801 gcaaagaatt taagtccttc atcttcatca aaatcaaaca ttaaattcat attttgaaca
    13861 gcttgtcctg ctgcaccttt gattaaatta tcaatagcac caagcacaat aacacgcttt
    13921 gtgcgttgat ctacactaaa atttatatcc gcaaaattgc ttgatttaac ccaccgagtc
    13981 tgcggaagcg actgcggcgg taaaagcctt atgaatttat tgttttgata gtattttgta
    14041 taaatatcgc gtatatcttg ttcttgcaag tcctctttta aatttgcata agcactgatt
    14101 aaaattcctc tttgcatagg tacaaggtga ggggtaaatt gtagagtgat tttctctttg
    14161 gctgcatagc ttaaatgctc ttcaatttca ggagtatggc ggtgcgaagc caaaccataa
    14221 gctttgatat tttcattaac ttcacaaaaa agattttcca ccttagcact tcttcctgct
    14281 ccacttactc cactttttgc atcaatgata actgaattaa aatcaatgat cttttcttta
    14341 aaaagcggat aaagacttaa gatagaacag gtggtatagc aacctggatt tgccaccaaa
    14401 cttgcttttt ttatctcttc tttataaagc tcgcaaagtc cataaactgc attttgcaaa
    14461 agctcttgat taggatgagt gaatttatac caaagctcat aatctttagg atttttaaga
    14521 cgaaaatccg cacttaaatc aatgattttc atctttttta acaaattctc atttaaaagc
    14581 ttagcactaa attcatgcgg agtagccaaa aacaaaagat caagttcaag ttcatctaaa
    14641 tttttgtttt caaaacataa atttaaaggg gtattaggat aaagatcttg ataattttgc
    14701 cccacgctag aactcgaacc taaataagaa atttcaactt tgggatgatt aagcaaaatg
    14761 cgtacaagct cattgcccgc ataaccactc gctcctaaaa tcccaacttt tattttcatc
    14821 tttatccttt aaatgtaaaa gcaagtatta taaacaaaaa aagcttaaaa taaaaataca
    14881 atttttaaat tattttttat ttaaaaacta tatcttaaat tagcatttac actccaatcc
    14941 acatttaaat cgccaaaaaa tgtcttttca aattcgaaac taaagcgtgt tttatcatta
    15001 agcttataat cacttcctaa atttataaac attctttgat ctttttttcc ttcatatctt
    15061 ctctggcttg cttgatcctc taaaatttga tctcctgttt taatcagatc tgcatacaaa
    15121 ccaagtcctg ttctaaaatt taaattttga ttttgacttc ctatgaaaaa tgctgttttt
    15181 gcgactaaag gaatataaga agatcgtttt aaactggcaa tatctccttt tagatccata
    15241 gctcctacat aaccactgat aaattccaaa ctcggctcaa gataaaattt atcataattt
    15301 tttctataac ctaactcagc acttaagatg atattatgcg aaccatcgtt atcatctagt
    15361 ctaccttgat ttcctgggat aaaatttgca tttacttcat tttgatgata aatatatctt
    15421 aaaacaaaat cactataaaa accttcatta aacaaaaggc taaaatattg tcctattcca
    15481 taaccattta atttcgcact caaatcagta gcacttaaat tcatatttgt ataattgatc
    15541 atcaccccgc tataaagctc gaaattcgaa tactcgttta atttatcata tccgctttga
    15601 atttcaaagt attttccact attatactca tcactcgtac ccccaccaaa agttcttaac
    15661 cacaccccac tttcgtaagg attattgcgt aattctccca ttcttttatg catattattc
    15721 cattctatca tggagcccaa agtagcttga gcaagtatag atttagcttt tgcaatagct
    15781 tgagtattat cattagtaaa aaaatactca tctttagttt tagaatcaat tttttctaaa
    15841 ttccactggg caaaattttc ctcattgtaa gaaaaaacaa catttggggt ataaatacta
    15901 aaaccttgct ccacatttgg tatagtaaaa aattcctttg ttaaatgttt attttcatct
    15961 tttaaatgag ctagtaatat atttaaaccc gcttctttgc taggattgtt aaaaaattta
    16021 atactaaagt attatttgtt ccttgcgcgc tttccttaga attaatataa tctgccttag
    16081 atttttcaaa atccacattg attttaaata ttgtattatt tgcacttaat ttttttgcat
    16141 caactttccc ataaatggca cttttttctg cttgaatatt actcatttgt atattagact
    16201 caagcaaaga atctttaatc acaagatttt tttgtgcatc atcaacacct ttaatattac
    16261 cgctaaaaac tatgttttgt aaagtagcat cagaatgatc aagatttaaa tttccactaa
    16321 aataaacctt ttctatctta gcattttggg tatttttaag attttgctca aatcccattt
    16381 ctttaccaac tcctgtttgt gcaacgtctc cataaaaact atcttgaact ttatcagtga
    16441 tattttcccc atctttttca tcgatccaca aatttttact tccaagctct attttggaat
    16501 ttttagcatt aagattttct acttttaagc ttgcattacg tcctaaataa aactcgcttt
    16561 tttctaaatt aagctctttt aaaacaaaaa accctatctt cccaatcttc ttgtgtaaaa
    16621 cttacaggtt tggttaaagc acttaaacct tgctcttgaa gttttttagc ttgttcttcg
    16681 cttacataag cgtgtattct agcatgtcct tgaaaattta acttggcgtt ttctgcctta
    16741 aaaacacctt ctttattgta aatattgcca tcaaaaatca aagctttatc tgtattagca
    16801 ctaattgtta tggcctcatc tgaaaaaata ttgccataat aaagataatt ttgcttgttt
    16861 tctaaattta aatttgcccc tgctttagag cttgtgataa aaacattatt agaattggct
    16921 ttaatttgat caaaaattta atgttaagcc cgatagatcc aaagttccac cattcatata
    16981 taaagtgtcg gtttttaaat tttgtgcgtt tttaaaccct aaagttccac cattcatata
    17041 aatttcacca aagcttaaac cttcaccctc aagacttacc ttaccctcac ccatcctaag
    17101 tcctgcatcc gcactttgac ttttgacaat aagttctcct tcgcccattt tataaagaaa
    17161 atcatctttt ttggttttaa cattatattc tatacttgaa cccttatcag cgtaaattcc
    17221 tccatgtata agccatttat cgcctgttat ttgccaattt gaattttgtt caaaatttaa
    17281 aacactagcg cctaaatcca catcgctatt taaatttata cttccatttt gaaaaaaata
    17341 caaatccttg ctattttgca tttctttgat tctatcatca tatttagcct tatcaccaaa
    17401 aatattttca taacttacat aacccgcatt agccccagaa attaagctaa caccttgcac
    17461 caactgccct tctttcatca aaccttgatt gcttaaagta taaacgcctt gtgcgatatt
    17521 aaccctatgg ctattttgaa attcattgat ctttgcttga ttgatcaaag cataatcaac
    17581 ctgtgaacaa gtatatccat cagtaaaatg ggcattacaa ttactcgtac ttactacacc
    17641 tactaaatac cattttttat caatcttatc ataaacataa actccacttc cagaatcccc
    17701 aggtgttgaa gaacttgtaa aaggatttct tttatcattg gtataattaa gaaattgcaa
    17761 cttaaaacgc ttatcttcag tatttttagg agctaaactg acaaaacctc ctaaattaat
    17821 ttcattagaa tcaaaaatct taatgggtac tttatttgta tcttcaaaac ctaaagctac
    17881 aataccactt ccctctctta caaagtactc ataacgcgaa ctatcaaaaa gcttgccttt
    17941 gcctttagaa taatcacatt ttccactttg acaactatcc caaaaaggat ccttgtattc
    18001 ataaatatct ccaccatcgc cagaatcttt ttcaataaaa ttgaaatctt tactcaaatt
    18061 tgcactttta ttgagattga tcttactcat ttttaaaaca gcaaaatcca cattttcttt
    18121 cttataagta aaattatcac ttgagcttac gattctattt gctacacctc caaagtgtaa
    18181 aacactacct tgtttcacat agcctttatt tacttcccca gtatttgaac ttgtactcat
    18241 atgagaagca ctgactatat aagattgtcc tatattggta aattctcctt ggaattttcc
    18301 tccacgattt gaagtagaaa aatcaatcat aggtacattg aaagagatat tttgattagg
    18361 attttttgct aaaatttcaa agccaatttg acctacttga aatttaccct tattgctagc
    18421 aaaatcaaga tattcttgaa aataaaactt tggatcaatg gccgaagcaa aaagataatt
    18481 agaaaaacca aatgccatta atgcacaaaa agataatttt agtttcataa atccctcctt
    18541 tttataaata taattttagc acaaaattta atttttaact aaaatataaa gttgttcatg
    18601 aagatggata ttacgatttt taagattgcg agaagctcta aaagtattat atttttgttc
    18661 taaaatccga tattttccaa gagtacttaa
//
LOCUS       DAEDTT010000018        18282 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.018, whole genome shotgun sequence.
ACCESSION   DAEDTT010000018 DAEDTT010000000
VERSION     DAEDTT010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18282
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.018"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..543
                     /locus_tag="KLC54_000504"
     CDS             <1..543
                     /locus_tag="KLC54_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HBD9176906.1"
                     /translation="NINYENKKDIAIFRGAVYQKHRKEFFDSYFGRTFCDIGDTSKQP
                     SQWEKNFLNKKEQMKYKFIISLEGNDVASNLKWAMNSNSLVLAPKITCETWFMEGTLK
                     PNYHFALIDNENLSAVIEYFKSRPKDALEIINNAHQYIKKFLDKKKEFHIGILVLTKY
                     FYYSRQLELNKKRDILELIK"
     gene            683..758
                     /locus_tag="KLC54_000505"
     tRNA            683..758
                     /locus_tag="KLC54_000505"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:716..718,aa:Ala,seq:ggc)
     gene            762..837
                     /locus_tag="KLC54_000506"
     tRNA            762..837
                     /locus_tag="KLC54_000506"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:795..797,aa:Val,seq:gac)
     gene            865..1395
                     /locus_tag="KLC54_000507"
     CDS             865..1395
                     /locus_tag="KLC54_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HBD9176907.1"
                     /translation="MQNTIIQKAVNKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFEPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     NAKGKGVAQKLLNFCENFALENHKASLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(1375..1977)
                     /gene="leuD"
                     /locus_tag="KLC54_000508"
     CDS             complement(1375..1977)
                     /gene="leuD"
                     /locus_tag="KLC54_000508"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HBD9176908.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(1979..3391)
                     /gene="leuC"
                     /locus_tag="KLC54_000509"
     CDS             complement(1979..3391)
                     /gene="leuC"
                     /locus_tag="KLC54_000509"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HBD9176909.1"
                     /translation="MTMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSIDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIRKLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ESITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALSYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGHKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(3378..4454)
                     /gene="leuB"
                     /locus_tag="KLC54_000510"
     CDS             complement(3378..4454)
                     /gene="leuB"
                     /locus_tag="KLC54_000510"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HBD9176910.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFEFNEAKI
                     GGASIDAHGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHTSPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERIAHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENDNG"
     gene            complement(4451..5986)
                     /gene="leuA"
                     /locus_tag="KLC54_000511"
     CDS             complement(4451..5986)
                     /gene="leuA"
                     /locus_tag="KLC54_000511"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HBD9176911.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRVLDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGMATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSAIGIHENRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENK
                     FILEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPALKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGISTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMA"
     gene            6306..6935
                     /locus_tag="KLC54_000512"
     CDS             6306..6935
                     /locus_tag="KLC54_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176912.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(6971..7615)
                     /locus_tag="KLC54_000513"
     CDS             complement(6971..7615)
                     /locus_tag="KLC54_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HBD9176913.1"
                     /translation="MNKKLLSIIASATLFSNLALADENSGFFIGADAAWMHAQVKSEL
                     KHKNTKQNFNGDISGNIPSFGLKLGYRLNENHRIYAGYNYSDEFSDFIKTPKIQIEGD
                     FTTHKFLTGYDFTPKLFEKTRAVLGVYGGYARTDLTLKTSFLSLSQNFDGYFYGAKIG
                     ALYDLTPHNEIELGFKAEQIHYNSRNFYQNKVGSNFYDPKQTNYGVYLGYNYKF"
     gene            complement(7753..8136)
                     /gene="queF"
                     /locus_tag="KLC54_000514"
     CDS             complement(7753..8136)
                     /gene="queF"
                     /locus_tag="KLC54_000514"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HBD9176914.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            complement(8382..10979)
                     /gene="flgE"
                     /locus_tag="KLC54_000515"
     CDS             complement(8382..10979)
                     /gene="flgE"
                     /locus_tag="KLC54_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HBD9176915.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTNYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQ
                     FYTTSKNSVEVTEKGVDAGSLFNAKGQGLNLRDGQGIWVSYADATYSTNKVGVNAFDP
                     NLQQNQTAAFWGTANQKVNLDITLNGVRIQNANIQSIDDAIAYINTFTAPTDTRDGTG
                     VKAVKNKDGSGIDFVNDNADGTTDNMKNINLVVANTNTAGELWNAVWDNNNQTFTFNN
                     TGNGQAGTPTINKNGSSLWTATNITFAPQPPQAATNVQLTGGLNAQIITAHKYIYSSN
                     PVDIGPMYNPDGGPAFQPGANATTRPTEPGSAAYWDAVNGGLLNTNVRTFRTTEDLRE
                     LLQRDARYGVDYDGSGTFAAADINQNIKVVVTADGHFAISNANEQSTVPPNAINGVGN
                     ATTTDPKNMSFNITAYSNKQGTVSTNDAFTAIFKAFDGPLVIGNQIKESEQLKLSAFS
                     AGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIIVGT
                     ARFNNDGSLASYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQAT
                     DGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVT
                     ANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQM
                     LQTLIQLKQ"
     gene            complement(11183..11665)
                     /gene="ruvC"
                     /locus_tag="KLC54_000516"
     CDS             complement(11183..11665)
                     /gene="ruvC"
                     /locus_tag="KLC54_000516"
                     /EC_number="3.1.22.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HBD9176916.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            11761..13083
                     /gene="dnaA"
                     /locus_tag="KLC54_000517"
     CDS             11761..13083
                     /gene="dnaA"
                     /locus_tag="KLC54_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HBD9176917.1"
                     /translation="MNPSQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAIIHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGIIERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKILVKSQS"
     gene            13243..14310
                     /locus_tag="KLC54_000518"
     CDS             13243..14310
                     /locus_tag="KLC54_000518"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HBD9176918.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMKLHF
                     NKDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            14339..16648
                     /gene="gyrB"
                     /locus_tag="KLC54_000519"
     CDS             14339..16648
                     /gene="gyrB"
                     /locus_tag="KLC54_000519"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HBD9176919.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEASYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(16674..17015)
                     /locus_tag="KLC54_000520"
     CDS             complement(16674..17015)
                     /locus_tag="KLC54_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HBD9176920.1"
                     /translation="MKKIILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(17018..18256)
                     /locus_tag="KLC54_000521"
     CDS             complement(17018..18256)
                     /locus_tag="KLC54_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HBD9176921.1"
                     /translation="MKQNNQKEDRRDFLKNIGFGLLGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YVSNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNVYGV"
BASE COUNT         6322 a         3161 c         2678 g         6121 t
ORIGIN      
        1 aacataaact atgaaaataa aaaggatata gcgatattta gaggagcagt atatcaaaaa
       61 catcgaaaag aattttttga ttcttatttt ggtagaactt tttgcgatat aggagatact
      121 tcaaaacaac ctagccaatg ggaaaaaaac tttttaaaca aaaaagaaca aatgaaatat
      181 aaatttataa tttctttaga gggtaacgat gtagcaagca acttaaaatg ggctatgaat
      241 tctaattctt tagttttagc tccaaaaata acttgcgaaa cttggtttat ggaaggaact
      301 ttaaaaccaa attatcactt tgctttgatt gataatgaga atttgtcagc agtaattgaa
      361 tattttaaaa gtcgcccaaa agatgcattg gaaattatta ataatgctca tcaatatatt
      421 aagaaatttt tagataagaa aaaagaattc catataggaa ttttggtttt gaccaaatat
      481 ttttattatt ctagacaact tgaacttaac aaaaaaagag atattttaga attaatcaaa
      541 tagtaaaatt actctcatta attctctaat ttttcataaa aaataaatct ttttatacat
      601 atattacatc ataaattaaa aatttgattt tagttttcag ccaaaaacaa gtaatattgc
      661 gataaaatct cagacttata aaggggcatt agctcagctg ggagagcaca acgctggcag
      721 cgttggggtc agcggttcaa acccgctatg ctccaccata tggttccgta gctcagctgg
      781 tagagcacta ccttgacatg gtagtggccg ttggttcaag tccaatcgga gccaccatca
      841 cccttcctta tacaaaggat tatcatgcaa aacactatca tacaaaaagc cgtcaataaa
      901 gatttaaatt ctatacttga aatcacaaaa gatgctttaa atgctatgaa aactatgaat
      961 tttcaccaat gggatgagaa ttatcccaat gaaatagttt ttcaagaaga tatacaagca
     1021 caagaacttt atgtgtttaa agaaaatgat gaaattttag gctttatctg tatcaatgaa
     1081 aaatttgaac ctgaatttta caaacaagtt atttttaaca aaaattatga tgataaagcc
     1141 ttttatctac accgtttagc tgtcaaacaa aatgcaaaag gcaaaggcgt ggcacaaaaa
     1201 cttttaaatt tttgcgaaaa ttttgccttg gaaaatcaca aggcaagttt aagagcagat
     1261 actcatagta aaaattttcc tatgaattcg ctttttaaaa agcttgattt taatttttgt
     1321 ggaaactttg acatacctaa ttaccaagat ccttttttag cttatgaaaa aattctaaac
     1381 caaaaagctt tttgagtttt tttcataggc tttgatttgt gcttcatgtt ttaaagttaa
     1441 agctatatta tcaagccctt ccaaaagaca aattctgtga aaatcatcta aatcaaaaga
     1501 aaaaatctta tctttaaaaa atactctttt ttccaacaaa gaaatttcta tatttttatc
     1561 ttgggatttt tttaactcat caactatttc caaaacctca tctttagcaa gttctatagt
     1621 gagcaaaccg tttcctaagg cattgttttt aaaaatatcc gcaaaagaag gtgcgataat
     1681 agctctaata ccataatcaa ccaaagccca aggcgcatgc tctcttgaag agccactacc
     1741 aaaattttca aaactcacca aaatagagct attttgatat tcttttttat tgagattaaa
     1801 atccatattt aaaacacttt ctttatcatc taaataacgc aaatcatgga acaaatgctt
     1861 gccaaaacct tgcttagaca ctgcaagtaa aaattgctta ggtataattt gatctgtgtc
     1921 tatattggca tattctaaag gacaagctat acctttgtgt ataataaatt tttgcatatt
     1981 aaactcctaa atactttcta ttatcacaaa taacaccttc tatggcacaa gctgctgcac
     2041 ttgcaggact catcaaatga gtgatagaac ctttgccttg tctgcctaca aagttacgat
     2101 ttgaagttga agcaactctt tgacctgaat ttgctttgtc atcattcata ccaagacaca
     2161 tagaacaccc tgcatatctc cactcacacc ctgcctcgat aaaaatctta tcgagtccta
     2221 aattttcagc ttcttttctt acttgcattg aaccaggcac gattaaagct ttaacatttt
     2281 tatgaatttt gtgccctttt aagatatcag cggctatttt aagatcttct aaacgcccat
     2341 ttgtgcaaga tcctataaat acaatgtcga tttttacccc ttctataact tgatcttgct
     2401 ctaaatttac ataagataaa gcatcaagca aagatttttg ctcactttga tttttaaaat
     2461 cacttatttt tggaattttt tcatctatgc caatcacttg cgaaggattt gttccatagc
     2521 taatttgtgg ttttatcttg cttacatcta gagtaatact ctcatcatat tttgctcctt
     2581 catcgcttct taaactcttc caatactcac aatacttttg aaattcttct cctttaggtg
     2641 caaattcctt tcccttaata tactcaaaag tgatctcatc aggagctatc atacctactt
     2701 tcgctccaaa ttctatagcc atattacaaa gagtcattct agcttccata cttagttttc
     2761 ttataagttc tccgcaaaat tctatagcat aacctgtgcc ttttgccgtg ccgtattgtg
     2821 cgatcaaata taaaatcaaa tccttagcat aaacgccttt ttgaaactgc cctttacatt
     2881 cgattttcat agttttaagt ttggcttgtt ttaaagtttg cgttgccatg acatgctcta
     2941 cttcactcgt gcctatacca aaggctaaag ctccaaaagc tccatgtgtt gccgtatgag
     3001 aatccccaca aactaaagta accccaggta aagtaaagcc aagctcagga cctactatat
     3061 gaactatgcc ttgattttta tctccaagtc ctaaaagcct tactccaaat tccttagtat
     3121 tttgcatcaa agttgtaatt tgctcttttg ccatatcaga acaagcattt aaatctatac
     3181 ttttagttga aacatcatga tctatagtag ccaaagttaa atccgctctt gccattctac
     3241 gcttagccat tttaagccct gaaaatgctt gagggcttgt tacttcatgg attaaatgtc
     3301 tatcgatata aagtatagga agttcgtttt tgccttcata aaccacatga gcatcaaaga
     3361 ctttttcata taaagtttta gccattgtca ttctccttta aaatttctaa aatacaatcc
     3421 cccatttcat cggtatttaa atacgactta gcatttaaat ccttagtcat ttttccttgt
     3481 gccaatgcca aagatatagc attttctata tcctgtgcgg cttgttcttc tttgaaacta
     3541 tactttaaca tcaaagccgc acttaaaatt tgagctatgg gattggctat atttaaatga
     3601 gctatatcag gcgcacttcc acctgctggc tcataaagtc caaaaccttt atcattcaaa
     3661 cttgctgaac ttaacaaacc caaagatcca ttaatggcag ctaactcatc actcaaaata
     3721 tcaccaaaaa gatttgaaca aagcataaca tcaaaaatgc taggattttt tacaatctgc
     3781 atcgcagcat tatccacata catgtactct aagtttatat cttgataatc ttttgcaaca
     3841 tttgccacca cttctcgcca caaaatagaa cttgctaaaa cattcgcctt gtcgattaaa
     3901 tgcacttttt tctttcttat tcttgcactt tcaaaagcga tatgagctat cctttctatc
     3961 tcttttttag tgtaaatttc agtatcatac gcactttctt tacctaaatc ttgcttacca
     4021 aaataaatcc cacctgtaag ctctctaaca cataaaatat ccactccttt ttggataatc
     4081 tcatttttta aaggtgaagt atgagttaaa ctttcataaa ttttacaagg acgcaaattt
     4141 gcaaacaaat taaaatgctt tcttaaaggc aaaagcgagg ctctttcagg tctttgatct
     4201 atgggcaaat tatcccactt aggccctcca acagagccaa ataaaatcgc atcactttgc
     4261 tcacaaagct ttaaagtttc atcacttaaa gccactccat gagcatctat acttgcaccg
     4321 cctattttag cttcattaaa ttcaaaacta aaattgtatt tttgcgcgat aaaagttaaa
     4381 atttttaaag cctctttcat taccaaaggc cctataccat ctcctgctaa gacagctact
     4441 ttataagttt tcatgccatt ttcctttctt ctacttttaa agagcgataa atcgcattgt
     4501 aagcactcac aaaagcttgt gctgaagctt ctataacatc tgttgaaatt ccttttccat
     4561 ggaattttct ccctttaaat tccaaatcca catccacttg tccttgagca tctacccctg
     4621 aactttttgc attgatacta taagctttta gcgcaggctt taaattcgtt atcctagcaa
     4681 tgcagttaaa aactgcttca acaggaccat ttcctgtgca agcttcagtt tttaactctt
     4741 ctttaatacg catacaaaca caagcagttg ggatattgcc actaatcacg cttaattttt
     4801 caagtataaa tttattttct tcttcatttt catagcttaa aaacatcaaa gcttccaaat
     4861 cataatcata cacttgaccc tttttatccg caaggcgtaa aaaacgctca taaacatcat
     4921 ctaaattata agtattttca tcatagccta aattttcaag gcaagttttt atcatagccc
     4981 ttccacttct tgccgtcatt aacatacgat tttcatgaat tcctatggca ctagggctta
     5041 tgatctcgta agtttgccta tttttaagca ctccatcttg atgaatgcct gaactatgag
     5101 aaaacgcatt gctacccact atagctttat gcgaaggtat actttcatta gtgatagctg
     5161 aaactaattt tgaagtttta aagatatttt cacatttaat atcagtataa aaacctttta
     5221 aataatcttt cctagttttt atcgccataa ccacttcttc taaagcacaa ttacccgccc
     5281 tttcgccaag tccatttata gtgcactcta tctgtcttgc accttgtaaa atagcactta
     5341 aactattgcc cgttgccata cctaagtcat tgtgacaatg cacagaaatg atagctttgt
     5401 ctatatttgg cactttgtta aataaaattt tgatgatatt agcaaattca cttggcaagg
     5461 tatagcctac ggtatctggg atatttatag ttttagcgcc tgcttttatc gcattttcca
     5521 ccataaaaca aagattatct atcggagttc ttcctgcatc ttcgcatgag aattctacat
     5581 catcagtata agatcttgct cttataatcg ctctttttgc catagacaaa atttcatcaa
     5641 aatctttttt taatttatct tgcatatgca aagtcgaagt ggctataaaa gtatgaattc
     5701 taaaatgctt tgccactttt aaagcttcat aagccatatc tatatcttta tccaatactc
     5761 tagaaagtgc gcaaatagtt gagtttttca ccttagaagc gatcttttgc accgctttaa
     5821 aatccccttg tgaagatacc ggaaaacctg cttctataac atctacgcct aaattttcaa
     5881 gcgctaatgc aatttgtaat ttttgattga tacctaaaga actacctaaa gcttgttctc
     5941 catcacgtaa agtggtatca aagattatga ttttattatc tttcatgatt taatccttta
     6001 aaaccaaaca gactgaatga attaaaaatt caaaaactta acaacaatga taaaaaatta
     6061 aaaatgtaaa aaatgattaa aaataaaatt gagttttaga gtgagagttg cagtagcaga
     6121 ttaaaagtat tgtctttact tttttgttgg actgaattta aaatttcaaa aatttgtttc
     6181 atcttttcct cctttgttaa aattaatact taatgtatca tatttttagt aaatgtgttt
     6241 gtaaaattct taaattaaga aaattattga tataattgta attttaagta acaaaaagga
     6301 agttgatgtt aaaagaactc ttagagatta aaaaagaaat ggaacctgtt atccacgaag
     6361 ccaatgtgaa attaaatgtc ctagctcgtg aagtcatagt ccgaaaaaaa gaatacgaaa
     6421 tttatgggcc tatggtagat cgtgtttatc ttgataatgc catttatgtt aaagttatgt
     6481 caagtggacg cgatgtaaaa acagacaatg tgactataaa aaatggtttt tatatggttt
     6541 ttgttgcccc tgaaaaagaa agtacaaaag atatcaaaaa taaactcaaa gtagcttatg
     6601 aaggacttga taacaaattt atcgctacac ttatacgatc ttgccaacgc tttaaagaga
     6661 tcataaacaa aacccaagct acacttgcta aagcttctaa aatgaatgta gtagtaaaaa
     6721 caaatttagg cgaagcaagt gctgctctaa aatttaacat cactatagaa tatactaaag
     6781 agaatcaaaa actcactcgt gaaaattcaa aatcagcagg aagtttcaga gatactaaaa
     6841 cttatatcaa tcttgtagta gaaaaaaata cagattctca aatttgtgaa aaactacttg
     6901 atgatgttga aaaatacttt atcggtggag gttgatttca ttaatgcaag ttataaaaac
     6961 ttgcattaga ttaaaattta taattatatc ctaaatatac accataattt gtttgtttag
     7021 gatcgtaaaa gtttgaaccc actttatttt gataaaaatt tctagaatta taatgaattt
     7081 gctctgcttt aaagcctaat tctatttcat tatgtggtgt caaatcatat aaagcaccta
     7141 ttttcgctcc ataaaaataa ccgtcaaaat tttgcgacaa agataaaaag cttgttttta
     7201 aggtaagatc tgttcttgca tatcctccat acacacctaa aacagctctg gttttttcaa
     7261 aaagcttagg agtaaaatca taacctgtta aaaatttatg tgtagtaaaa tcaccttcga
     7321 tttgaatttt aggagttttg ataaaatcac taaattcatc agaataatta taaccagcat
     7381 aaattctatg attttcattt aaacgatatc caagttttag accaaacgat ggtatattac
     7441 ctgaaatatc tccattaaaa ttttgctttg tattcttatg ttttaactca ctttttactt
     7501 gagcatgcat ccaagctgca tcagcaccta taaaaaaacc agaattctca tctgctaaag
     7561 ccaaatttga aaacaaagta gcacttgcga taatgcttaa taatttttta ttcataacct
     7621 aactccttat aataaaattc gatctaaaaa atttagatct ttttatatta tatattcttc
     7681 aaagattaaa taagaatttt ttataaaata cttaatcttt acataaaaat atgttaatat
     7741 tttacttaaa tattattttg gcactaccat atcgctacga cattctatca ccgtatgcac
     7801 atttccacgc gggttaaaat cccccacaac tttaatccat tttggtttta atttatcttt
     7861 taaagtatta taaatttcat tgatacttgc ttcatgtgaa acatttctat acataaaagt
     7921 attgatataa agttttatcg ccttaagctc aaccacaaat ttatcaggca tatactcaag
     7981 ataaatcgtc gcaaagtcag gataacccga acgcggacaa caacacataa attcaggtaa
     8041 agtgatttta atgatatagt catttttagc atcatttggc caaatttcca tattttctac
     8101 atcaaattct ttgatttcct tttcaccata acgcataaat ttccttaaat ttaaattcga
     8161 gcaaaaatta taacaaaata agtttttaaa acgattataa tacagataag aaaatgcaat
     8221 tttattgcaa ctcaccccct agcaagagtg agttagcaat aaattgaagg cagttcaagc
     8281 ctaagcctag tattacaaga ctaccaagat aggcttgtaa agcaaggctt gctcccttaa
     8341 agggagcaaa aaacaatatt ttatagaata ctaagcttaa attattgttt aagctggatt
     8401 agagtttgaa gcatttgatc actcgttgaa atggtttttg aatttgcttg ataacctctt
     8461 tgaatgataa taagctctgt taaagaacga cttaaatcca catttgacat ttcaagagct
     8521 gaggttttca tctcaccacg acctcctgtt cctgcttcac ctactacgat attaccacta
     8581 tttgcagtga ctttaaaaag atttccaccg atttcttcaa gacctgagtt atttgccact
     8641 gaagccattg ctatttttgc tacagcaaag gttttaccat tagtaaattc acctaagata
     8701 tttcctttat catctacacg gatagcatca ggttttaagt tacctgaagt ataaccatca
     8761 gttgcctgtc ctgttagagt tgaagcagaa tttgagctta caagaccatc attgcttccg
     8821 cttgttccaa aggaaagttt aatttgttga tttggtgcgg caccattatt tggtgaaaaa
     8881 tttatcgttc ttggtgtata actagctaaa gatccatcat tattaaatct tgctgttcct
     8941 acgatgatat tgtttggtcc ttcgcctgta gtgttaatct cagcaggttc tggcacacgg
     9001 ataatcattt gccattcatt acccccatct tgagtggtgc tttgcttaac aaactgcact
     9061 tctaaagtat gttttgaacc taaggaatca taaatttcaa gtcctgctga aaaagcagaa
     9121 agcttaagtt gctcgctttc tttgatctga tttcctataa ccaaaggacc atcgaaagct
     9181 ttaaaaatag cagtgaaagc atcattagta cttacagttc cttgtttgtt actataagct
     9241 gttatattaa aactcatatt ttttggatct gttgtagtgg catttcctac accattaata
     9301 gcatttggtg gaacagttga ttgttcatta gcattggaaa tagcaaaatg tccatctgcc
     9361 gttactacta cttttatatt ttgattaata tcagctgcag caaaagttcc acttccatca
     9421 taatcaaccc catatctagc atccctttgt aaaagttctc ttaaatcttc tgtggttcta
     9481 aaagttctta cattagtatt taaaagtcca ccattaacag catcccaata agctgctgaa
     9541 cctggttcag ttggtcttgt agttgcatta gcaccaggct ggaatgctgg tccaccgtca
     9601 ggattataca taggacctat atccacaggg tttgaactat aaatatattt atgtgctgtt
     9661 attatttgtg catttagtcc accagtaagc tgaacattcg tagctgcttg aggaggttgt
     9721 ggtgcaaatg taatatttgt agctgtccac aaagaagaac catttttatt aatagtcggt
     9781 gttccagcct gtccattacc agtattatta aatgtaaatg tttgattgtt gttatcccat
     9841 acagcattcc aaagctcacc tgctgtattg gtattggcaa ccacaagatt gatatttttc
     9901 atattatctg tagtaccatc ggcattatca ttgacaaaat caattccact accatcctta
     9961 tttttaaccg cttttacacc tgttccatcc cttgtatccg ttggtgcagt aaaggtattg
    10021 atataagcaa tagcatcatc aatactttga atattagcat tttgaattct aaccccattt
    10081 aaagttatat ctaaattcac tttttgatta gctgttcccc aaaaagcagc agtttgattt
    10141 tgctgtaaat ttggatcaaa agcatttact cctactttat tggtagaata tgttgcatct
    10201 gcataagata cccaaattcc ttgtccatct ctaagattaa gtccttgtcc tttcgcgtta
    10261 aaaagcgagc ctgcatctac acctttttca gttacttcta cagaattctt agaagtcgtg
    10321 taaaactgag tggttcctgt atcattttca tcttcggctc tttgggtttt agtattccat
    10381 ccatgaacag aatcaagtgc ataaagattt ctacttgaag ttcctatatt taaaccgcta
    10441 tttaaattcg ctttgatggc tacttctgtg gattttgctg cagggatatg catacctgga
    10501 tcgataaaaa tattttgtgg agttcttgaa ctatctatag tttgatcatc ccagtttata
    10561 ttccatcctt ggacaacaaa acctgcattg tttacaaaat tcccataagc atcaagttta
    10621 aaatccccgc tccttgtaag atagtttgta agccccccat catcactcac cataaaaaaa
    10681 ccatcaccat ttatagcaac gtcagtgttt ttatctgtgg tttgaactga accttgagaa
    10741 tgaattctag ttgtagaact tactgaaacg ccaagaccga tttgaagtgg attagatcca
    10801 cctcttccat cagttggagc tgtagcgatt ttcacagttt ggctaaacat agtcccaaaa
    10861 tctgcacggg agtatttaaa accagtggta ttaacatttg aaatgttatt accttcaaca
    10921 tccatcgcaa cttgatgtgc ttgtagtccg cttacgccag accaaagtga tctcatcatc
    10981 ttaaatcctt tataaaatat tgctttaaaa aatttaacgc tttggcttta aaaaactttt
    11041 gcgtttatgt gaagtttaca agcaagttct gttccaactt ttgaaatttt ttatgaattt
    11101 tttaaaaatt tatagaaaaa atttaaaggt attttgggag tttatgaagc tttggtcttt
    11161 tgtgtaatga aaattaccaa aatcacaccc taactcttaa atttgctgca tgggttaaag
    11221 ccactgcaat agcatctgtg atatccaaag gcttgatatc tttactaagt cctaaaagtc
    11281 tttttaccat aaaagcaact tgttctttgg ttgctttggc ttttcctgta acggcttttt
    11341 ttacttgtaa gggagtgtat tctgcaaaat ctccatgaat ttgaagaatt tttaaagata
    11401 gggctccgcg aaattgtgcg agttttaaaa cggtttttgg attgtaagca aaaaagatat
    11461 cttctatagc cacctcatca aaagaatgat ttttaaaaat caagtccaaa ccctcgcaaa
    11521 gctctgtgat ttgatactgt aaggtacttg gctttatctt tataagtcct gcttctatga
    11581 gaatgttttt tcctttgtca gcttctatga tagcataacc acaatttctc gaacctggat
    11641 ctatacctaa aattttcaaa ttcatacctt ttgaaaaata aaatacaaaa gcggatttta
    11701 accttttttt ataaaattta agataaaatt tatacattat gcaaaattta aagagagatt
    11761 atgaatccaa gccaaatact tgaaaattta aaaaaagaat taagtgaaaa cgaatacgaa
    11821 aactatttat caaatttaaa attcaacgaa aaacaaagca aagcagatct tttagttttt
    11881 aacgctccaa atgaactcat ggctaaattc atacaaacaa aatacggtaa aaaaatcgca
    11941 catttttatg aagtgcaaag tggaaataaa gccattataa atatacaagc acaaagtgct
    12001 aaacaaagta acaaaagcac aaaaatcgac atagctcata taaaagcaca aagcacgatt
    12061 ttaaatcctt cttttacttt tgaaagtttt gttgtggggg attctaacaa atacgcttat
    12121 ggagcatgta aagctataat acataaagac aagcttggaa aactttataa tcctatcttt
    12181 gtttatgggc ctacaggact tggaaaaaca catttacttc aagcagttgg aaatgcaagc
    12241 ttagaaatgg gaaaaaaagt tatttacgct accagtgaaa attttatcaa tgattttact
    12301 tcaaatttaa aaaatggctc tttagataaa tttcatgaaa aatatagaaa ctgcgatgtt
    12361 ttacttatag atgatgtgca gtttttagga aaaaccgata aaattcaaga agaatttttc
    12421 tttatattta atgaaatcaa aaataacgat ggacaaatca tcatgacttc agacaatcca
    12481 cccaatatgc taaaaggtat aatcgaacgc ttaaaaagtc gttttgcaca tgggatcata
    12541 gctgatataa ctccacctca actagataca aaaatagcca tcataagaaa aaaatgtgaa
    12601 tttaacgata tcaatctttc taatgatatc ataaactata tcgccacttc tttaggggat
    12661 aatataagag aaatcgaagg tatcatcata agtttaaatg cttatgcaac catactagga
    12721 caagaaatca cactcgaact tgccaaaagt gtgatgaaag atcatatcaa agaaaagaaa
    12781 gaaaatatca ctatagatga cattttatct ttggtatgta aagaatttaa catcaaacca
    12841 agcgatgtga aatccaataa aaaaactcaa aatatagtca cagcaagacg cattgtgatt
    12901 tacctagcta gggcacttac ggctttgact atgccacaac ttgcgaatta ttttgaaatg
    12961 aaagatcata cagctatttc acataatgtt aaaaaaatca cagaaatgat agaaaatgat
    13021 ggttctttaa aagcaaaaat cgaagaactt aaaaacaaaa ttcttgttaa aagtcaaagt
    13081 taagtgaaag gatgtgaaaa ataaattcta gagtgtgaaa aaaagaaatt aagcaaagta
    13141 tgataaaata caaatttgat tattttgctt tgaagaattt cacaatttca acaagcttat
    13201 tattacaacg aatttaaaat taaaataaac caaggagaaa aaatgaagtt aagtatcaat
    13261 aaaaatactt tagaatctgc agtgatttta tgtaatgctt atgtagaaaa aaaagactca
    13321 agcaccatta cttctcatct tttttttcat gctgatgaag ataaacttct tattagagct
    13381 agtgattatg aaataggtat caactataag ataaaaaaaa tccgcgtaga atcaagtggt
    13441 tttgctactg caaatgcaaa aagtattgca gatgttatta aaagcttaaa caatgaagaa
    13501 gttgttttag aaaccattga taatttttta tttataagac aaaaaagcac aaaatacaaa
    13561 cttcctatgt ttaatcatga agattttcca aattttccaa atacagaagg aaaaaaccaa
    13621 tttgacattg attcaagtga cttaagtcgt tctcttaaaa agatattacc aagtattgat
    13681 acaaacaacc caaaatactc cttaaatggt gcatttttag atataaaaac agataaaatt
    13741 aacttcgtag gaactgatac aaaacgcctt gcaatctata ctttagaaaa agcaaataat
    13801 caagaattta gttttagtat ccctaaaaaa gctattatgg aaatgcaaaa acttttctat
    13861 gaaaaaatag aaatttttta tgatcaaaat atgcttatcg ctaaaaatga aaattttgaa
    13921 ttctttacaa aacttatcaa tgataaattt ccagattatg aaaaagttat accaaaaact
    13981 ttcaaacaag aactcagttt ttcaactgaa gattttatag atagtcttaa aaaaatcagc
    14041 gttgtaactg aaaaaatgaa acttcatttt aacaaagata aaatcatctt tgaaggtata
    14101 agtttagaca atatggaagc aaaaacagaa cttgaaattc aaacaggagt aagtgaagaa
    14161 tttaatctta ctataaaaat caaatattta cttgatttct taacttctat agaagaagaa
    14221 aaattcactt taagtgtaaa tgaacctaat tcagcattta tagtcaaatc ccaaggacta
    14281 tcaatgatta tcatgcctat gattttgtaa taaaacaagt aaaagataaa ggaaaaatat
    14341 gcaagaaaat tacggtgcga gtaatattaa agtcctaaaa ggcctagaag ctgttagaaa
    14401 acgcccaggt atgtatatag gagatacaaa cataggcgga cttcatcata tgatttatga
    14461 agttgtagat aattctatcg atgaagctat ggcaggacat tgtgatacta tagatgtaga
    14521 aatcactact gaaggaagct gtatagttag tgataatggt cgtggtattc ctgttgatat
    14581 gcacccaact gaaaatatgc caactttaac tgttgtttta actgtcctac atgcaggggg
    14641 aaaattcgat aaagatactt acaaagtttc aggcggtttg cacggtgttg gggtttcggt
    14701 tgtaaatgca ctctctaaaa aacttgtagc tacagttgaa agaaatggag aaatttatcg
    14761 tcaagaattt tcagaaggta aagttatcag tgaatttggt gtgataggaa aaagtaaaaa
    14821 aacaggaaca actatagaat tttggcctga tgatcaaatt tttgaagtaa ctgaatttga
    14881 ttatgaaatt ttggctaaaa gatttcgtga acttgcatac ttaaatccaa aaatcactat
    14941 aaattttaaa gataaccgcg taggcaaaca tgaaagtttt cactttgaag gtggaatttc
    15001 tcagtttgtt acagacttaa ataaaaaaga agctttaact aaagcaattt tctttagtgt
    15061 agatgaagaa gatgtgaatg ttgaagtagc tttgctttac aatgatactt atagtgaaaa
    15121 tttactctct tttgtaaata atatcaaaac cccagatggt ggaacacacg aagctggttt
    15181 tagaatgggc ttaactcgtg tgataagtaa ctatatagaa gcaaatgcaa gtgctagaga
    15241 aaaggataat aaaatcacgg gtgaagatgt gcgtgaaggt ttaatcgctg ttgtgagtgt
    15301 aaaggtgcct gaaccacaat ttgaaggaca aaccaaagga aaacttggtt caacttatgt
    15361 gcgtcctata gtttcaaaag caagttttga gtatttgact aaatattttg aagaaaatcc
    15421 tatcgaagct aaagctataa tgaacaaagc cttaatggca gctagaggaa gagaagcagc
    15481 gaaaaaagct agagaattaa cgcgtaaaaa agaaagttta agcgtaggaa ctttaccagg
    15541 gaaattggct gattgtcaaa gtaaagatcc aagtgaaagt gaaatttatc ttgtggaagg
    15601 ggattctgca ggaggttctg caaaacaagg tagggaaaga tctttccaag ctatactgcc
    15661 tttgcgtggt aaaattttaa atgttgaaaa agcaagacta gataaaattt taaaatctga
    15721 gcaaattcaa aatatgatta ccgcttttgg ctgtggtata ggtgaagatt ttgatctttc
    15781 aaaacttaga tatcataaaa tcatcatcat gacagatgcg gatgttgatg gatctcatat
    15841 acaaaccttg cttttaactt tcttcttccg ttttatgaat gaacttgtgg caaatggaca
    15901 tatttattta gcacaaccac ctttatatct ttataaaaaa gctaaaaagc aaatttattt
    15961 aaaagatgaa aaagctttga gcgaatacct gatagaaacg ggaatagaag gtttaaacta
    16021 tgaaggtata ggaatgaatg atttaaaaga ttatttaaaa atcgttgcag cttatcgtgc
    16081 gattttaaaa gatcttgaaa agcgttttaa tgtgatttct gtgatacgct atatgataga
    16141 aaattcaaat ttagttaaag gaaataatga agaattattt agtgtaatca aacaattttt
    16201 agaaacacaa ggacacaata tcttaaatca ttatatcaat gaaaatgaaa ttcgagcttt
    16261 cgttcaaact caaaatggct tagaagaact tgtgatcaat gaagaacttt tcactcatcc
    16321 actatatgaa gaagcaagtt atatttttga taagattaaa gatagaggct tggaatttga
    16381 taaagatatt ttagaagttc ttgaagatgt tgaaaccaat gctaaaaaag gtgctactat
    16441 acaacgctat aaaggtttag gggaaatgaa tcctgagcaa ctttgggaaa ctacaatgga
    16501 tccaagcgta agaagacttt taaaaatcac tattgaagat gcacaaagtg caaatgatac
    16561 ctttaatctc tttatgggtg atgaggttga accaagacgc gattatatcc aagcacacgc
    16621 taaagatgta aagcatttag atgtgtaaat ttatcattga agaaatgatt tcttcaatga
    16681 gttttgtttt gtaagagtat agctagagga attcttcttc ttgtatcgta tttttctcca
    16741 taatattttt caagataatt taaaattttt tcttcatctt caggttctat ttcccaaagt
    16801 ccttcactat cttgcatcca tcttatagct gctaaccaag cttttctact tgcatgcata
    16861 ttggtaatga gattggatcc atgacaagct aaacaatttg cttccactaa cggtgaatca
    16921 ggatcgataa tcaatcctgt atcagggtta atttcaagat tttgagccca acttgcactc
    16981 aaaaacaatg ctaagatcaa tataattttt ttcatactta aactccataa acattaactc
    17041 tatggcatgc attattgata tatcctcctg gattccactg tgctaaaacc ataggttgac
    17101 tgttaccttg actatcgata gctcttgccc aaatttcata atatcctttt gttggtattg
    17161 atatttgagc actccatttt tgccatgcta atctatttaa tggtttttct acctttgctt
    17221 tagtccatgt tacgccataa tcattgctta cataaacttc actaacttca agttctccag
    17281 cccaagcttt acctctaact tcaaattttt tatttgcttt tatttcagaa ccatttttga
    17341 tattagtaat tacagatctt ataggcattg attctatgat tttcatctcg cctttatagt
    17401 taaaatctcc tggttttacc ggatttacag gaactttata agaaccttcc attttttcac
    17461 catcgtgaat tttatttctt actgaaattt tataaagcca tttaccgctt gtacttgcag
    17521 ggtaaccacc acaaacaagt ctaagtggat agccattgac taaaggaata tctttgcctt
    17581 cataagccca agctattaga gtttcatctt gtaaagcttt agaaatagga actcctctac
    17641 taataggtga agtttcttca ccatttaatt ttgtatctat gccataatat ccgatataaa
    17701 ccgcatcatt tttgatgcca caatctttta aaatatcttt taaacgcact cctgtccatc
    17761 taccgcaagc tactgcacca taaccccatt gagttccttt tgtgctaggt ataacttcgg
    17821 atctaccatt tccaccgcat tcaactgtta aggcataagt ataggtttta aatttctttt
    17881 ttaaatcttc tatggtgtaa gattttttat tgataatgct ttctccatcg atttctaaag
    17941 tccaaccttt atgaagtctt tcttttatcg tttctaggct tggtggtaag ccattatttc
    18001 taacaaagaa attttcaggt ttagtaaaat cagaatcaag agcataaatt tcagtttctg
    18061 ctgttaatgg tttttcgcca tgatagataa gatctttttt accttctatt ttaaaatcag
    18121 gcaattcttt tgccaaagcc ttacttccta aaaaattctc aaaagaaaaa tttgacaata
    18181 cgctgatacc aagcaaacca aatcctatat tttttaagaa atctctgcga tcttcttttt
    18241 gattgttttg tttcattgaa atatccttat atttttatga tt
//
LOCUS       DAEDTT010000019        17947 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.019, whole genome shotgun sequence.
ACCESSION   DAEDTT010000019 DAEDTT010000000
VERSION     DAEDTT010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17947
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.019"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            36..461
                     /gene="exbB"
                     /locus_tag="KLC54_000522"
     CDS             36..461
                     /gene="exbB"
                     /locus_tag="KLC54_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HBD9176922.1"
                     /translation="MEFLKDYIDLIIFLILGIMAFIAFWCVVERMLFFRKINFKNYEN
                     QEQFDDAISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIVVGLSL
                     ALKATALGLLVAIPALMAYNALLRKVSLLSNAYKANKNA"
     gene            454..843
                     /gene="exbD"
                     /locus_tag="KLC54_000523"
     CDS             454..843
                     /gene="exbD"
                     /locus_tag="KLC54_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HBD9176923.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            840..1523
                     /locus_tag="KLC54_000524"
     CDS             840..1523
                     /locus_tag="KLC54_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HBD9176924.1"
                     /translation="MKTLFLNHKYQASYITFIVFIPLLFVIFHSNDFFKMEIKNEDSF
                     SLAIKQFTQTNPTNETKPTESIIEPIKPKPQPKVIKKTPEKIQKKIKKTPPHPIPNKT
                     PIAPTQEVKTFTKTTDTNVKPKITQLTQGKDNHPVLKEIQKAIQQAQFYPRQAKKMRM
                     QGTVKVEFLWKENKTLADLKIIESSGYDLLDKSALESIRKASLNFPQYNGDLRITLPI
                     IYDFKTLRG"
     gene            complement(1536..2405)
                     /locus_tag="KLC54_000525"
     CDS             complement(1536..2405)
                     /locus_tag="KLC54_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176925.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKIVFENKQGELIALNLSDENYSSLQKNFGSYTNYVARNDGSIRLNGEANQFVSNWF
                     ESVKDNFGSLNSNLNNKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIKEASGGGANAMKTIDPQKINKKDDKENNI
                     KEKEDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIVDKRV"
     gene            complement(2409..2570)
                     /locus_tag="KLC54_000526"
     CDS             complement(2409..2570)
                     /locus_tag="KLC54_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176926.1"
                     /translation="MLKIILVLSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            2665..3648
                     /locus_tag="KLC54_000527"
     CDS             2665..3648
                     /locus_tag="KLC54_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HBD9176927.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMIGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGISGRSRKRQLELAAKFGLEDFESPGGGCLLTLDNFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEVIELGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(3735..4823)
                     /gene="aroC"
                     /locus_tag="KLC54_000528"
     CDS             complement(3735..4823)
                     /gene="aroC"
                     /locus_tag="KLC54_000528"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HBD9176928.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFDICVQSGVFGVGTFV
                     SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLVGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSCHNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLEFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(4823..5497)
                     /locus_tag="KLC54_000529"
     CDS             complement(4823..5497)
                     /locus_tag="KLC54_000529"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HBD9176929.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(5484..5924)
                     /gene="rnhA"
                     /locus_tag="KLC54_000530"
     CDS             complement(5484..5924)
                     /gene="rnhA"
                     /locus_tag="KLC54_000530"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HBD9176930.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5911..6897)
                     /locus_tag="KLC54_000531"
     CDS             complement(5911..6897)
                     /locus_tag="KLC54_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176931.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFANKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKEHDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            6967..8784
                     /locus_tag="KLC54_000532"
     CDS             6967..8784
                     /locus_tag="KLC54_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HBD9176932.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPTKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAQKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGYEDSDIREFESKNIRKNLNYSEFLLG
                     ICKVNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEELNNFLKEYLSFLKY
                     EKNEEILQQSFRNLNGIFSNKNFTAYDLGFSAQDNDEPF"
     gene            8866..9138
                     /locus_tag="KLC54_000533"
     CDS             8866..9138
                     /locus_tag="KLC54_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HBD9176933.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGVVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            9125..9676
                     /locus_tag="KLC54_000534"
     CDS             9125..9676
                     /locus_tag="KLC54_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HBD9176934.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANDRFIKLQEKLIGFKSEIKT"
     gene            9660..10943
                     /locus_tag="KLC54_000535"
     CDS             9660..10943
                     /locus_tag="KLC54_000535"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HBD9176935.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLKFVAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISAIATNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGTIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            10947..11258
                     /locus_tag="KLC54_000536"
     CDS             10947..11258
                     /locus_tag="KLC54_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HBD9176936.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            11255..12349
                     /locus_tag="KLC54_000537"
     CDS             11255..12349
                     /locus_tag="KLC54_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HBD9176937.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNTKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWIGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDAYWGDIGVDFVVRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNT
                     SLVVTKIDPKSKASNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            12346..13191
                     /locus_tag="KLC54_000538"
     CDS             12346..13191
                     /locus_tag="KLC54_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HBD9176938.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDTHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            13201..15099
                     /gene="tkt"
                     /locus_tag="KLC54_000539"
     CDS             13201..15099
                     /gene="tkt"
                     /locus_tag="KLC54_000539"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HBD9176939.1"
                     /translation="MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSGKKELLERLLNPDFSKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHGMGDFIEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFVLSRQKLKALNEP
                     IFGDVKNGAYLLKESKDAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFE
                     KQDKTYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSK
                     LINFILSK"
     gene            15101..16210
                     /locus_tag="KLC54_000540"
     CDS             15101..16210
                     /locus_tag="KLC54_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaE family lipid ABC transporter permease
                     subunit"
                     /protein_id="HBD9176940.1"
                     /translation="MNANFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKDKNIKITKEGLNSRFQTLFELCEKNYQRLSKTKKSH
                     KNFSEYFIDLGKLSLELLKILIKFTNFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIIIPRVMALVVAMPLIVAISDAISII
                     GGMMVAKLNLDISFAEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVVLTSAGI"
     gene            16211..16933
                     /locus_tag="KLC54_000541"
     CDS             16211..16933
                     /locus_tag="KLC54_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HBD9176941.1"
                     /translation="MVIKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDGGEYEILGYKLKNIDEEDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKKFME"
     gene            16936..17826
                     /locus_tag="KLC54_000542"
     CDS             16936..17826
                     /locus_tag="KLC54_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HBD9176942.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEISIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFIQLQGGSKNSKDLVSIHGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKNIKESTMILKNFIKKADEKLNTYDDIKASLMQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
BASE COUNT         6542 a         2802 c         2713 g         5890 t
ORIGIN      
        1 ttttaaaatt tataagtata tttttggaga aaaatgtgga atttctaaaa gattacatcg
       61 atttaattat ctttttaatt ctaggaatta tggcatttat agctttttgg tgtgtcgtag
      121 aaagaatgct attttttaga aaaattaact ttaaaaatta tgagaatcaa gagcaatttg
      181 atgatgcgat tagtgaaaat ttaaccacta tatatatcat ctattccaat gctccttata
      241 taggactttt aggcactgta ataggcatca tggttacatt ttacgaaatg ggcttggcgg
      301 gtaatataga tgtcaaatct atagtcgtgg gactttcttt agctcttaaa gctacagcct
      361 taggactttt ggttgctatt cctgctttaa tggcttataa tgccttactt agaaaagttt
      421 ccctcttaag caatgcttat aaggcaaata aaaatgctta aactaccaaa aaatgaaggt
      481 ttaaatatag ttccatttat agacattatg cttgttttgc ttgctatagt gcttagtatt
      541 tcaaccttta ttgcgcatgg aaaaattcaa atctcacttc cttcaagtga aaatgctacc
      601 aatataagca ataatgaaaa aaaacttctt ataaccatag acgaaaaaaa tactttttat
      661 ttaaatgata aattagctga tttaaatgaa gttcaaaatg ctattttttc acttgataaa
      721 aaaaccatag tagaactaaa aagcgataaa aatgctaaat ttgaaagctt tgtaaaaatt
      781 atagattttt taaaagccaa agaacatgaa aattttcaga ttcttactga gaaaaacaaa
      841 tgaaaacttt atttttaaat cataaatacc aagcttctta tataactttt atagtcttta
      901 tacctttact ttttgtcatt tttcactcaa atgacttttt taaaatggaa attaaaaatg
      961 aagattcttt ttctttagca ataaaacaat ttacccaaac taatccaaca aatgagacta
     1021 aaccaacaga atccattata gaacccatca aaccaaaacc tcagccaaaa gttattaaaa
     1081 aaactcctga aaaaattcaa aaaaagataa aaaaaacacc tccacaccca ataccaaata
     1141 aaaccccaat agcaccaact caagaagtta aaacttttac aaaaacaact gatacaaatg
     1201 tcaaacctaa aatcacccaa ttaacacaag gaaaagataa tcaccctgta ttaaaagaaa
     1261 ttcaaaaagc tatacaacaa gcacaatttt atccaaggca agcaaaaaaa atgcgtatgc
     1321 aaggaactgt aaaagtagaa tttttatgga aagaaaacaa aactttagca gatttaaaaa
     1381 tcatcgaaag ctcaggatat gatttgttag ataaaagtgc tttagaaagc ataagaaaag
     1441 cttctttaaa ttttccacag tataacggag atttaagaat tacactacct attatatatg
     1501 attttaaaac cctaagaggg taaaattata atttgctaca ctctcttatc tacaatttgc
     1561 gcttcttgat tttcaatttt attttgaaaa tctttactta aattctgact taattcttgc
     1621 aaagattttt gcttcagttt ttcaaattct tcaggattgc tagcctcaag ctttgcctgc
     1681 tcatcagcac ttaaagcact taaacctttt tcttgagctt tttgaagcaa atcttcgtct
     1741 tctttttctt tgatattatt ttccttatca tcttttttat tgattttttg cggatctata
     1801 gttttcatag cattagctcc accacctgat gcttctttaa tgtcgcttaa aatttctctc
     1861 atgctaggtt ctttaacatc actatcatca actttaccat ctttatttac atctttatca
     1921 ataaaaaaat ttaatttttc ttctatattt gcatcatcag atattttttc atcgcttgtt
     1981 ttaaagccta aattttgcat actttgctga agagtacttg tattaaaatt taattttaca
     2041 ctttgttgtt tattatttaa atttgaattt aaagaaccaa aattatcttt tacactttca
     2101 aaccaatttg aaacaaattg gtttgcttcg ccattaagcc ttatactacc atcatttcta
     2161 gcaacataat tcgtataaga accgaaattt ttttgtaaac tactataatt ttcatcgctt
     2221 aaatttaaag ctataagttc accttgctta ttttcaaaaa caatcttaac accatcgcta
     2281 tttaaactcg aaagatcttg cacgggaatt ttatcttgat cttctttttt taatacgcta
     2341 agctcttttt tatcaacatt attagttaaa gaatgagtta aactagcaga agtatcgatt
     2401 ttcattattt atcctttttt acattttgca aataaaccta aacgacacat ttttctctca
     2461 tgtgaatttt ttaaagaatt acacttttta agttcttgct cgtagttagc acaagaattt
     2521 gcaaaagcaa aagaactcaa aatgcttaaa accaaaatta tttttaacac tttccaatcc
     2581 ttattttaaa gattttttag ttaaaattat accttttata atcgacaaaa tcttaaaaaa
     2641 ctttataatc tcagaaagga atcaatgaaa gcattagctc tttttagcgg tgggcttgat
     2701 agtatgcttg caatgaaact catcactgca caaggcatag aagttaaagc tctaaatatc
     2761 aacataggtt ttggaagcac aagtgataaa agcgaaatca tgaaaaagcg tgcggcaatg
     2821 ataggtgcag attttgaaat gatagatgta agaaattcct atcttcaaga agtgcttttt
     2881 aatccacaat atggctatgg caaacatttt aatccttgta tagattgtca tgcttttatg
     2941 tttaaaactg ctttggctat gttaaaagaa gaaaacgcaa gttttatcat cacaggagaa
     3001 gttttaggac aacgccctat gagtcaaaga agtgatgcga tggcaaaggt taaaaaactt
     3061 gctcttgatg aagaagattt aatcttgcgt cctatgtgtg caaaaaacct acctctaacc
     3121 aaacctgaaa gagaaggttg ggtagataga gaaaaactcg aaggtattag tggaagaagt
     3181 cgtaaaagac aacttgaact tgcagctaaa tttggcttag aagactttga aagcccaggt
     3241 ggaggttgtt tgctaactct tgataatttt gctaaaaaaa ttcgagattt catagaattt
     3301 gacaaagata tgcaggttaa tgacgcacaa cttttaaaat atggtcgtca tttaagatta
     3361 cctaatggag ctaaaatgat cataggtaga aatgaacttg aaaatactct tttaaaaggt
     3421 ttaaaaactc ctaaatatga agtcatagaa cttggggatt taatcggagc ttactctttg
     3481 gtagatgaaa aaatttcaga aaaagactta gaacttgcct taaaaatagc ccttacctat
     3541 actaaacacg aagtaggaaa aagctatgaa cttaaattta aaaatcaagc ttatacaagt
     3601 atagcttttg aaaataaggc tgatattaat caatttttta ttagttaaag tataaagtat
     3661 ttagcaaaac aagcgatata gtatttgaat cttttcaaaa tattgcaatc aagcccatga
     3721 aaatgggctt ttttttattt taatccataa gcatttttta aattgtttaa attcgcactc
     3781 gcattcaaaa gcaaacaatc agccaaaact aaacgcacca tagcactagc tacaacactt
     3841 cctctaacac ctacacaagg atcatgccta cctttgagtt caaattccaa attattgcca
     3901 aatttatcta tactttcttg cttggcaaaa atagaaggag taggtttaaa ataagttttt
     3961 aaaataagat tttctccatt tgaaattcct cctaaaattc ctccactatg attgcttaaa
     4021 aacttgccat cttttaaagc atcattatga cacgatccgc gcattttgct tgcattaata
     4081 ccttcgccta tttcaactgc tttaacagca ttaattccca ttaaagcatg agctaattta
     4141 gagtctaact tatcataaag aacttctcca agtcccacaa gcataccact aacttttgta
     4201 aaaacagcag cgcctacact atcttttgaa tttctagcat ttaaaatttc atttttaaag
     4261 tcactttcta gttttggatc aaggcaaaaa atttcacttt tcttagcaaa ttcaaaatca
     4321 aattcttctt ctttcaaatt tgatacaaaa gttcctactc caaaaacacc actttgaaca
     4381 caaatatcaa attcacgcaa aagcatcgct gcaactgcac caccagccac tctagcaaca
     4441 ctttccctag cgcttgatct acccccaccc ctatgatctc ttatgccata tttataaaaa
     4501 taagtaaaat ccgcatgagc aggacgaaat agatctttta aattatcata atccttagaa
     4561 tgagcatttt cattaaaaac cactatagct atgggatgac ccgttgtata tccttcaaaa
     4621 accccgctta aaacctgagc tttatcgctt tcttttcttg gtgttgcaaa tttacttccg
     4681 cctttgcgtt tatcaagctc attttgtaaa aattcttcat caaatttaac tccagcaggc
     4741 attccatcaa taatacatcc aacagccaca ccatgagact caccaaaact tgtaaatttc
     4801 aatctcgtac caaaggtatt cactataaag ctcctaattt ctcaagtgca atttttgctg
     4861 ccatttgctg tgcttctttt ttgcttcccg caatagctct tgcaagttct ttaccatcaa
     4921 gcattaaagc gatttcaaat tgctttaaat gatcaggacc aaaagcacgc actgtttcat
     4981 actgcggagt ttgtccgatt tttccctgtg taatctcttg taattttgtt ttataatctt
     5041 ttataagaat ttttgcatca atttgaggga aatttttttc tataagcctt aaagcaatag
     5101 tttttgcaaa ctcaaaccca gcttctaaat gtatagcacc tataatggct tctaacgcat
     5161 ctgaaagtat agaaggcttt tcttttcctc cattgttttc ctcagcaaca ctcataaaaa
     5221 taaaatcgcc caaatttaaa ctatttgcaa tttttgcaaa agacttttca ttcactaaag
     5281 ccgctctaag cttagataaa tctccttcgg catctttagc gaatttatga aaaaggtatt
     5341 cacccacaac taaatcaagc acagcatcac ctaaaaattc caagcgttcg ttgttgtaag
     5401 attttttaaa acttttatgg gttaaagcat gtatgagaag atttttatct ttaaattcat
     5461 aagttaaact ctgctctagt ttttcaatgt ttttcatcat tttcccttgc aattttcaaa
     5521 gcagcttcac gcgccaatgt atcacacctt tcattttcca aatgtccatt atgtgctttt
     5581 acccaaaaag ccttaatctt atgagatttt gccactttaa tatattcctt ccataaatct
     5641 atattttttt tacctttaaa atcctttttt atccatcctt ctagccattc attaatactt
     5701 tgaaccatta ggttagaatc tgtaaaaagc gaaatttcac aaggctcttt taaagccttc
     5761 aaagattcaa taattgccat tagctccatt ctattgttag tggtattagc ctcagctcca
     5821 aaaccttcct tttgatactc cttataacgc aaaatataag cccatccgcc aaaacctgga
     5881 ttattaagac atgaaccatc tgtataaatt tcaatgtgtt tcattgtttt tcacttcata
     5941 aataatttta caagtattaa actcataaca aacaggacag tgataaaaaa acaaaggcat
     6001 aacattttta cactcagaac aacggtatga aaattctaac cccgcattaa aagaattatc
     6061 ttttaaaatt tttaacattt taaaattaga atttttaaaa acaaactgat gcgtatcatc
     6121 atgttttgaa attttaccca aagcataaaa gaattctaaa aaatcttgat tttctaaatt
     6181 aaacgcttca ttttccctat aaagcaaatc acaaatatca aaaaaatttt gccctaaaaa
     6241 catatgatat ttttcaaaaa ctaaacgccc caacatagga ttatcttcta ttttaaattc
     6301 taaaagtttt ttcttttttt cttcatcagt gatattaaaa gtacaaagtt ctaaagcttt
     6361 gataaaatca tgctcttttt gcacatcttc attaagctca aaaagacatt ctaaaagttc
     6421 taaattttct ttataagaac gaagttttaa ataaacaatt tttaaaagtt ttaaagcttg
     6481 tatatttctt ggacgcagtt ttaaagcttg taataaaact tcttttgcac gctctaaaaa
     6541 tcctgcttta aaataaactt ttgccaaaga aaggaaaata aattctcttt cttgtttatc
     6601 tttacatttt tcaagagcaa ttaaataaat ttgagttgct ttttcaaatt ccccactttt
     6661 agtaaaaatt tcggccaaaa aacttaaatt tccaaaactc aagctactat ttcttaacaa
     6721 ctctttatga gcgttatcca tttcaaattt ttttataaat ttttcaagct tttgttcttc
     6781 atctttgtta gcaaatattt tccaaatata atttgcaaca gctacaacaa atactaaaat
     6841 tgttaaaatt ataagcccta ctaaagggtc tctgtattct acaaagaaaa aatccatagt
     6901 ctcgctctaa aaattttatg ccaaattata gccaaatctt tgtataattt taacaaggtt
     6961 tgtaaaatga taactaaaga aagtatagaa aatttatccc aaagacttaa tattgttgat
     7021 attatagaaa attatattga agtaaaaaaa caaggctcta gttttgtgtg tatctgccct
     7081 tttcatgcag ataaaaaccc gtctatgcat atcaatccta ccaaaggttt ttatcattgt
     7141 tttgcctgca aggctggtgg agatgctttt aaatttgtaa tggattatga aaaattaagt
     7201 tttgccgatg cagttgaaaa agttgcaagc cttagtaatt ttactttgag ttatacaaaa
     7261 gaaaaacaag aaaataaaaa agagctaaag tctatactac caagcttaaa tgcgtatttt
     7321 aaagataatc tcaaacacca caaagaagtc ttaacctatc tttaccaaag agctttaaat
     7381 gacaaagata tagccaaatt cgaattaggt tttgcgggag caagtgaaga tagtataaga
     7441 ttattgcaaa atcaaaaaat tcctttagaa gatgctatga gtgttggagc tttaaaaaaa
     7501 gatgaaaata atgaatttta cgcaagtttt atatggcgta tcacctttcc aatctacgat
     7561 cataaagact tattagtagg gtttggaggg cgtactttaa atcccaatgt accggcaaag
     7621 tatgtaaatt caccccaaaa tatacttttt gataaaagta gaatttttta tgcttttaac
     7681 atcgctaaag aaaatatagc ccaaaaaaaa gaaataatag tatgtgaagg ctacatggat
     7741 gcaatagctt ttcacaaagc agggtttaat aatgctgtag cagttcttgg aacagcatta
     7801 accgaacatc atctaccctt aatccgccgt tatgatgcaa aagtgatttt atgttttgac
     7861 aatgatgaag caggattaaa agctgcgaca cgatctgcat ttttattaag cacaaacaaa
     7921 atagacggta aagtggcaat tttgcaaggt ggaaaagatc ctgctgagct cgtagcaaaa
     7981 aatgaaagca caaaacttca tgatatactc gatgaaggaa tagagcttgg tgaattttat
     8041 atcagacgct taatatccac tcattccata atttctgctc ttgataaaca aaaagcttta
     8101 gaaactatac aaaaattcac ctttaatctt gaacctttag tggcaaattc ttacactagt
     8161 ctagtttcaa atttattaaa agtagatgaa aaatttattg tcttatcaca aaattcaaaa
     8221 aaaaccatac aaaccccttt aatttctcaa aataaataca attttcctaa agaaaaaatt
     8281 cacattgcag aattagaact tatagctttt ttaaaacagc atccagatat atgtaacgat
     8341 tttaagcaaa ttagtgatag tgtttgtttt aagcataaaa ttttattgga taaaatttta
     8401 gaaaaaaaag gttatgaaga tagtgatatt agagaatttg aaagtaaaaa tattcgaaaa
     8461 aatttaaact atagcgaatt cttgttaggt atttgcaagg ttaatttagc ttttttaaac
     8521 aatgtaaaaa ttaaaaattc tacactcgca ttaaaaaaac aactttttac gcttattgat
     8581 aaaaatttaa atcttctaat taaaaattta aataccgaag aattaaataa ttttttaaaa
     8641 gaatatttaa gcttcttaaa atatgaaaaa aacgaagaaa ttctgcaaca atcatttaga
     8701 aacttaaatg gaatttttag caacaaaaac tttacagctt atgatttagg atttagcgca
     8761 caagataatg acgaaccttt ttaatttatt taaatttcaa gccttaattt accttttttt
     8821 aaacacaatc acgctaaagt atataaaaat ttttaaggat aaattatgat gccttttagc
     8881 gatgaagagc ttataaatcc tgttaaagca agtttagaaa agagcttgcc tatgcttgaa
     8941 cgtgatggcg gagggcttga atttttagga attaaaaatg gggttgttta tgtccattta
     9001 ataggagctt gtaaaggctg tgcatcgagt ggaacaacgc taaaatatgg ccttgaaagg
     9061 caacttaaga tcgatattca tccagaaatc actataatca atttaaacgg cggagcagac
     9121 gaatttgcaa aattataaaa aacttggaat tgaacatttt tacaagaaag attttaaaac
     9181 tgcaaaaatg tatttttcta tggcttatga aaaacgcaaa aataaacgct tgctaaattt
     9241 tatctgcctt tgtgatcttg ctttaaaatc tcctaaagaa gcttctttac tttttgattt
     9301 ttatatagaa cattacaaaa tctctagcat tgataaagac ttagaagaaa ttttaagtac
     9361 aattgaattt aaaaaacaag aaaacaaaca ggaaaatgaa tttgaagatg ggcatgcgtt
     9421 aaattatcaa gattttttaa aaagcgaaga agaacttggc tttcaaaaaa gttttgaaaa
     9481 tatcattaat agcactaaat tagttattga taatcgtgat gattttttag attttttgga
     9541 aaaattactt gataatggct ataaagatat gactttaaat tatatagaaa atgttatgcc
     9601 tcatttttgg gcaaatgata gatttatcaa actccaagaa aaactcatag gatttaaaag
     9661 tgaaattaaa acttgaaaat tcattcatta cagataatac cttagagtgt gaaaaagaat
     9721 gctttttttt acaaaccaca caaaatgcta aatttcacgc tcaagcctta gaaaaaggtg
     9781 caaaaatcat tgatgtaaat gagtgtaaaa aacttttaaa aatcgatgaa aagattcaaa
     9841 tcataggaat cacaggaacc aatggcaaaa ccacaaccgc agcagcgatt tattctatct
     9901 tattggattt aggttataaa tgcgggcttt gcggaacaag aggagctttt atcaacgatg
     9961 aacaaattga tgaaaaatcc ttaaccacct cccctattct taaaacctta gagtacctac
    10021 aaatagccac tcaaaaaaaa tgtgattttt tcatcatgga agtaagctca cacgcactcg
    10081 ttcaaaaccg tatcgaaggc ttaaaatttg ttgctaaaat ttttaccaat atcactcaag
    10141 atcatttaga ttttcacggt acttttgaaa attacaaaga agcaaaagag ctttttttta
    10201 cagatgagag tttaaaattt atcaacaaag atgctttggc tattaaattt aatgtgcgta
    10261 atgcttttac ttatggtata gaaaatcctg ctttatatca aatcaaagct tattctttag
    10321 aagaaggcat tagtgctatt gcaacaaata aaaatcaaac ttttcacata gactcgccct
    10381 tgctaggact ttttaatctt tacaatcttc tagttgctag tgcttgtgtg aatgaactcg
    10441 taaagcctga tttaaaagat ttagaaaaag ctatcagtgg atttggcggg gtttgtggta
    10501 gagtagaaca agtagcaaaa ggtgtgatcg tagattttgc tcatacgcct gatggcattg
    10561 aaaaagtact tgacactctt aaaaataaaa aactcatcgt tgtttttgga gcaggtggag
    10621 atagagataa aaccaaacgc cctttaatgg gaacaatcgt cgaacatttt gcaaaaattg
    10681 ctatcattac aagtgataat ccacgtagcg aagaaccaaa aaccatcatg gaagaaattt
    10741 tatcaggctt tgctaaaaaa gaaaaagttt taatgataga agatagaaaa gaagctataa
    10801 aaaaagcttt agaactaaaa gaaaatgacg atttagtcgt tattttaggc aaaggtgatg
    10861 aaactactca agaaattaaa gggataaaat atccttttag tgataaagta gttgttaatg
    10921 aaattttaaa aaatcaagga taatcaatgt ttgaaaatat ggatttttct aaaatgggcg
    10981 aacttttaaa tcaagttcaa gaaaaagcaa aaaatataga actagaactt gcaaatcgtg
    11041 aatttagcgc caaaagtgga gcaggacttg ttaaagtaag tgctaatgga aagggtgaaa
    11101 ttatcgatgt tagcattgat gattctttac ttgaagataa agagtccttg caaattttac
    11161 ttatttctgc aattaatgat gttttggcta tggttgcgca aaatcgttcc agtatggcaa
    11221 atgatgtttt aggtggtttt ggaggtatga aattatgaaa aaaattttaa ttatttgcat
    11281 gctttttact ttgtcttttg gtatagaaag acctaaattt gaagattttt tagcaggtta
    11341 tgaaagaaat aaggcaagca tgctcaacta tgaaggaatg ccagcttttg cactcagtga
    11401 aaatttactt gctgtgttaa aacagcctaa tactaagctt aacaaatatg taaaatatga
    11461 tccattttta aatttatatc ttgtaagaac tgactttagc ctaatcccta ctcctatggg
    11521 tgatgaagaa aaacttactc gtaatgattg gattggaatt tgggatccta ataaacctta
    11581 tatagggcat attaagtatt tagctcaaaa tattgacgaa aaagatcaac ttgattttaa
    11641 ttctaaaata ggacttttag ggactccgtg ctgtgaaatg atggggattg ctttaaataa
    11701 tagctctttt ataggcaatc gctatttaaa acattttatg aaatataacg atgcttattg
    11761 gggggatatt ggcgttgatt ttgttgttcg agaaaataaa atttatgtta acaatgtaag
    11821 aaaaaatcca caatttttaa tcaacgatca agttataagt gttgatggct tgcccgccaa
    11881 tgatttaaga aaactcaatg aaaaaattct ttttgcagat cgcggaagca ctctttattt
    11941 tcaagtgttg cgtgataata tggatttaaa tatttctact gaagtttttg caaaagattt
    12001 gagcaaattt aatcttcctg attctaaacc aaaaccaaaa attacaaatt tcacaagcaa
    12061 tcttggttta acggttaata ctagtcttgt tgtaactaaa atagatccaa aatcaaaagc
    12121 atcaaatgca ggatttatgg taggagataa aattttacgc gttaataata ttattttaaa
    12181 taattttaaa gaattacaaa atattttaag cgctggtaat gactttagca tcttgattga
    12241 acgcaaaagt actaaattac ctttatcaaa tttcaacaat gaactaggcg gaaatgccaa
    12301 ctcaggtggc gacggtaaat ttcaattttt cataaggctt actaagtgaa tttaaaagaa
    12361 ctttttatcc atcacttaga aaaaaatcta cctaaagttg aaagttttca tccttttttt
    12421 aatgaagctt tagcccttat gctaaaagca ggaggaaagc attttcgtgc acaattgctt
    12481 ttaagcgtag tacaaagcaa taaacctgaa cttttaaatc aagctttaga tgtggcttta
    12541 gctttggaat ttatccatac ttattcactc atacatgatg atttacccgc tatggataat
    12601 gcggatttta gacgaggaat tccaacctta cacaaaagct acgatgaaac tacagccatc
    12661 ttagtgggtg atgctttaaa tactgaagct tttttagttc taagtcatgc tcatttaaaa
    12721 gatgaaatca aaatcaaact catcaaaacc cttgccttta atgcaggact taatggaatg
    12781 gtcataggac aagctattga ttgtttcttt gaagacaaaa gactgagttt aaatgaactt
    12841 gagtttttac atacacacaa aaccgcaaga ttaatcgctg cagctttaaa aatgggttgt
    12901 gaaatttgcg aacttaacaa cgaagaaagc aatcaaattt acaaacttgg tttaaaacta
    12961 ggactgattt ttcaaatcaa tgatgatatt atcgatgtaa ctacaagtca agaacaaagc
    13021 ggaaagccta ctaacaacga tactcataaa aattcttttg tcaatttact tggacttgaa
    13081 caagccataa aaacaaaaga aaatcttctt agtgaatgtg aacaagactt agaaaaactt
    13141 aatgaaaaac tcgcgcaaat gatacaaaat ttaataattc aatacttata aaggcaaaaa
    13201 atggacattc aaattttaca agaacaggca aatactctaa gatttttaag tgccgatatg
    13261 gtgcaaaaag caaactcagg acacccaggt gcacctttgg gtttagcaga tattttaagt
    13321 gttttaagtt atcatttaaa acacaatcct aaaaatccca cttggctaaa ccgtgataga
    13381 cttgtatttt caggcggaca tgcaagtgct ttgctttata gttttttaca tttaagtggc
    13441 tatgatttaa gcttagaaga tcttaaaaat ttccgccaac ttcattctaa aaccccagga
    13501 caccctgaaa tttcaactct tggagtagaa atcgctacag gccctttagg acaaggcgtt
    13561 gcaaacgctg taggctttgc tatggcagca aaaaaagcgc aaaatttgct aggtagtgat
    13621 ttaatcgatc ataaaattta ttgtctttgc ggagatgggg atttacaaga aggcatttct
    13681 tatgaagctt gttctttagc aggacttcac aaacttgata atttcatact tatttatgat
    13741 agcaacaata tctccataga aggcgatgta ggtttagcct ttaacgaaaa tgtaaaaatg
    13801 cgttttgaag cacaaggatt tgaagtttta agtataaatg gacacgatta tgaagaaatt
    13861 aataaagcct tagaacaagc taaaaaatcc acaaaacctt gtcttatcat cgcaaaaaca
    13921 actatagcaa agggtgcagg agagcttgaa ggcagtcata aaagccatgg cgcacctttg
    13981 ggcgaagaag tgattaaaaa agccaaagaa caagcaggtt ttgatccaaa tatcagtttt
    14041 catatcccac aagcaagcaa aatccgcttt gaaagtgctg tagaacttgg ggatttagaa
    14101 gaagcaaaat ggaaagataa acttgaaaaa agtggtaaaa aagaactttt agaaaggcta
    14161 ttaaaccctg attttagcaa gatagcttat cctgatttta aaggaaaaga tcttgctaca
    14221 agagatagca atggtgaaat tttaaatgtt ttagctaaaa atttagaagg atttttaggt
    14281 ggaagtgcgg atttaggccc ttcaaataaa acagaacttc acggtatggg agactttata
    14341 gaaggtaaaa atatccattt tggcatcaga gaacacgcta tggcagcgat taacaatgct
    14401 tttgcaagat atggaatttt cttaccattt tcggcaactt ttttcatctt tagtgagtac
    14461 ttaaaacctg ccgcaagaat agcagcccta atgaaaatca aacatttttt tattttcacg
    14521 catgatagca taggcgtggg cgaagatggc ccaacacacc agcctataga acaacttagc
    14581 acttttagag ctatgccaaa ttttttaacc tttaggcctg ctgatggggt agaaaatgtc
    14641 aaagcttggc aaatagccct aaatgctgat attccaagtg cttttgtgct ttcacgccaa
    14701 aaactcaaag ctctaaatga acctattttt ggagatgtaa aaaacggagc gtatttactc
    14761 aaagaaagca aagacgctaa atttacactt ctagcaagtg gaagtgaagt ttggctttgt
    14821 ctagaaagtg caaacgaact tgaaaaacaa ggttttgctt gtaatgttgt ttctatgcct
    14881 tgttttgaac tttttgaaaa acaagataaa acttatcaag aaagattgtt aaaaggtgaa
    14941 gttataggcg ttgaagcagc gcattctaat gaactttata aattttgcca caaagtgtat
    15001 ggcatagaaa gttttggaga aagtggtaaa gacaaagatg tgtttgaaca ctttggattt
    15061 agtgtttcaa agcttataaa ttttatcctt agcaaataaa atgaatgcaa atttcaaatt
    15121 tcaaaataac actcttttta tctttggaat ttgggataaa acaagtattt ataagttaaa
    15181 aataaaagat tttttagctt tgattcaaag caaggaagtg atttttgatt ttaaagatct
    15241 aaaagcaatc gataccgctg gagtaagatt tttccttgct ttggaaaatg accttaaaga
    15301 taaaaatatt aaaatcacca aagaaggctt aaattcacgc tttcaaaccc tttttgaact
    15361 ttgtgaaaaa aactaccaaa gactaagtaa aacaaaaaaa tcacataaaa atttcagtga
    15421 atattttatc gatcttggaa aattaagttt agaactttta aaaattttaa taaaattcac
    15481 caatttcaca ggagcttttt tcacaagtct ttttttatgc cttaaaaatc ctaaaaattt
    15541 tcgctttatt gcttttttat atcatataga aaattctgct tttaaagctt tgcctatagt
    15601 tattttaacc gctcttttag taggagtggt tttagcctat caggctgctt atcaactcgc
    15661 acaatttgga gccaatattt tcatagtgga tttgatggga atttcagcca ctagagaact
    15721 tgcaccttta atcgctgcca tagtgatcgc aggaagaagt gcaagttctt ataccgcaca
    15781 aattggagtg atgaaaatca ctgatgaaat tgcagctatg aatactatgg gttttcgttc
    15841 ttttgaattt attattattc cgcgtgttat ggctttggta gtggctatgc ctttaatcgt
    15901 tgccattagc gatgcgatca gtattatagg tggaatgatg gttgcaaaat taaatcttga
    15961 tatttctttt gccgaatttt taagacgctt tagagaagct gtagatataa aacatatctt
    16021 tataggactt gcaaaggcac ctatttttgg atttttaata ggacttattg cttgttttcg
    16081 tggttttgag gtaaaaaaca ctacacaaag cataggaatt tatacaacaa aaagcgttgt
    16141 aaatgctatt ttttgggtga tagcttttga tgctttattc tctgttgttt taacttctgc
    16201 aggaatttaa atggttatta aagcgcaaaa tatcattaca aaatttggag aaaaaattgt
    16261 ccatgatggc gtaagttttg aaatcaaaaa aaatgaaatt tttggtattt taggaggtag
    16321 tggaagtgga aaatccgtcc ttttaaaaca aatgcttatg cttgaacatt ttgatggtgg
    16381 agaatatgaa attttaggct ataaacttaa aaatatcgac gaagaagatg cacttgcttt
    16441 gcgtaaaaaa tggggtgtgg tttttcagtt tgctgcactt tttagctttt ttaatgttta
    16501 tgaaaatatc gctattcctt taaaagaata cactcattta gatgaaaata gcatacaaga
    16561 actggtttta atgaagctaa aaatggtagg cttaaacgaa agtgttttaa aacaatttcc
    16621 aagcgaactt agtggcggta tgcaaaaaag agtggcaatt gctagagctt tagcacttga
    16681 tagtaaattg ctttttttag atgaacctac ttcaggactt gaccctcata gtagtcgcga
    16741 atttgacgat ttggttttag agttaaaaaa aagttttgat ttaaatatca ttttggttac
    16801 acatgataaa gaaagtatga aaaatttact cgatcgcttt atcattttag aaaataaaaa
    16861 agttggattt tgcggtactt acgaagaatt gcgcttgcaa aatgaacgac tttttaaaaa
    16921 atttatggag taaaagtgga aaatagagca aattattttt ttgtaggact ttttgttttt
    16981 ggagtatttt ttgcaagtct tggtttcata ctttggcttg ggggatactc caaagaagaa
    17041 agttttaagt attatgaaat tcacacacaa gaatccgttg caggacttgg tataaaagca
    17101 cccgtaaggc ttttgggcgt ggaagtaggt agcgtggaag aaatcagcat ttacaatcaa
    17161 gatgaactcg gcgttaatat acgcatcaag gtcaaaaaca atacccctat aaaagaagac
    17221 acctttgcta ctttacaact tcaaggtatc acaggactta aatttatcca acttcaaggc
    17281 ggaagtaaaa atagtaaaga tctagtatct atccacggaa aacttccagt cattcctttt
    17341 aaagaaagtt ttttagcaac catagacaga caaagtgaac atattttttc tttggttaaa
    17401 acggccgatg ataaatcaaa agaactttta agcgaaaaaa atcttaaaaa tctagaaatc
    17461 cttttgcaaa atctagcaga attaagtgca aatttaaacg ctaattctaa aaatttaagt
    17521 cttaatcttt caaacgcaag tttaaaaata ggaaaaatgg ctgataatat aagccttagt
    17581 gcgcaaaatt tcaactccag tcttaaaaac ataaaagaaa gcacaatgat tttaaaaaat
    17641 ttcataaaaa aagctgatga aaaattaaac acttatgatg atattaaagc atctttgatg
    17701 caaaatttag aactttttaa acgggtttta attgaaagca atattctaat agaaaattta
    17761 caaaacagcc ctgctgattt gatttttaaa gaaactaaac ctaaacttgg accaggagaa
    17821 aaataatgct aaagcaaata ttctatattt ttacttttat ttttatatta tgcggatgct
    17881 ctttaaaaca cgaaaccatc aataaaaatg aaaatatcat attaaaagat gaaggaatag
    17941 actcaaa
//
LOCUS       DAEDTT010000020        17150 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.020, whole genome shotgun sequence.
ACCESSION   DAEDTT010000020 DAEDTT010000000
VERSION     DAEDTT010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17150
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.020"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            142..699
                     /locus_tag="KLC54_000543"
     CDS             142..699
                     /locus_tag="KLC54_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HBD9176943.1"
                     /translation="MKIKKILLLVAISCLFVACGNDKEKQQNDVNLSTEASINQSDDM
                     NFKLNLIDGGSISVKKENAVLNFNDEDKATLFVFFTTWCTPCIAEIPHLNKLQEKYNN
                     DFNIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKH
                     SKLINQYLGLIPEEMLEIDIQKAIL"
     gene            699..1565
                     /gene="ftsY"
                     /locus_tag="KLC54_000544"
     CDS             699..1565
                     /gene="ftsY"
                     /locus_tag="KLC54_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HBD9176944.1"
                     /translation="MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            1565..2905
                     /gene="radA"
                     /locus_tag="KLC54_000545"
     CDS             1565..2905
                     /gene="radA"
                     /locus_tag="KLC54_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HBD9176945.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIIDSIQTLYSNKITSVAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            2974..3654
                     /locus_tag="KLC54_000546"
     CDS             2974..3654
                     /locus_tag="KLC54_000546"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HBD9176946.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHAP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            3651..3842
                     /locus_tag="KLC54_000547"
     CDS             3651..3842
                     /locus_tag="KLC54_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176947.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(3864..4712)
                     /gene="metF"
                     /locus_tag="KLC54_000548"
     CDS             complement(3864..4712)
                     /gene="metF"
                     /locus_tag="KLC54_000548"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HBD9176948.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEVASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLEKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALAGIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNALALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(4722..6986)
                     /gene="metE"
                     /locus_tag="KLC54_000549"
     CDS             complement(4722..6986)
                     /gene="metE"
                     /locus_tag="KLC54_000549"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HBD9176949.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALIQ
                     KYGFAKDKILFAGLINGKNIYANDYAKSLKLIKELQKYTQNIVLNTSCSLLHVPYSTE
                     FESKLDSSYLKLFAFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRTKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            complement(6998..7768)
                     /locus_tag="KLC54_000550"
     CDS             complement(6998..7768)
                     /locus_tag="KLC54_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HBD9176950.1"
                     /translation="MTLFTKAFCVATLFTSFAWANEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKHKKFNPEEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLDDVDYSLINSNFAILVGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSDEVKKFIEEKYQGALIPTF"
     gene            complement(7779..8770)
                     /locus_tag="KLC54_000551"
                     /pseudo
     CDS             complement(7779..8770)
                     /locus_tag="KLC54_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
     gene            complement(9082..9576)
                     /gene="luxS"
                     /locus_tag="KLC54_000552"
     CDS             complement(9082..9576)
                     /gene="luxS"
                     /locus_tag="KLC54_000552"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HBD9176951.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSVAK
                     AWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
                     LENA"
     gene            9691..11109
                     /gene="gatB"
                     /locus_tag="KLC54_000553"
     CDS             9691..11109
                     /gene="gatB"
                     /locus_tag="KLC54_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HBD9176952.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHENNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKARFIDELGIKESDAEVLISSLEMSRFFESLISQNL
                     NSKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKDKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            11106..12002
                     /locus_tag="KLC54_000554"
     CDS             11106..12002
                     /locus_tag="KLC54_000554"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HBD9176953.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGMRAWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGAKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILVELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQSLLKQND"
     gene            12012..13190
                     /locus_tag="KLC54_000555"
     CDS             12012..13190
                     /locus_tag="KLC54_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HBD9176954.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDANGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCRFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMYIIKGKNILEK
                     "
     gene            complement(13198..14724)
                     /locus_tag="KLC54_000556"
     CDS             complement(13198..14724)
                     /locus_tag="KLC54_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HBD9176955.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWIASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKDQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            14866..15672
                     /locus_tag="KLC54_000557"
     CDS             14866..15672
                     /locus_tag="KLC54_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HBD9176956.1"
                     /translation="MRGIFYIIALFSLLNADELTEALAKNNNQNSWEHFDYENTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENAQVKNLSSLYEGENNSLL
                     FQKELFVAQDNYNYSWGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKNLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(15669..17045)
                     /locus_tag="KLC54_000558"
     CDS             complement(15669..17045)
                     /locus_tag="KLC54_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HBD9176957.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIIAGIVLGYIDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVAQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGDMEISEANATL
                     AQVLPVTAIGILLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
BASE COUNT         5746 a         2483 c         2921 g         6000 t
ORIGIN      
        1 agttttgaat gtttgaaaag gcgtattttt tgcaatgccc taaaatctgt tttttccatt
       61 aatatgcctt taaaaaaata ttatcttatg tatgttataa ttttagcatt tttataaaga
      121 agaataaagg attgataaat aatgaagatt aaaaaaatac ttttactagt ggcaatatct
      181 tgtttgtttg ttgcttgtgg caatgataaa gaaaagcagc aaaatgatgt aaatttaagt
      241 accgaggcaa gtatcaatca aagtgatgat atgaatttta aacttaattt gattgatgga
      301 ggatcaattt cagttaaaaa agaaaatgcc gttttaaatt tcaacgatga agataaggca
      361 actttgtttg tattttttac tacttggtgt accccttgca ttgctgaaat ccctcatctt
      421 aataaattac aagaaaagta taataatgat tttaacatag ttggagtttt attagaagat
      481 aaatctaacg atgagattca aaaatttata gaacagcata aaatatctta taaagtcgct
      541 aatggtgaaa ataactatct tttagctaaa gctttaggcg gggtaaatgg aattcctact
      601 atgtttcttt acaacaagca ttctaaattg attaatcagt atttagggct tattcctgaa
      661 gaaatgctag aaatcgatat acaaaaggct atactttaat gtttaatttt tttaaaaaag
      721 gacttgcaaa aactcttgaa aatattgttg gagttaaagg agagaacaaa aaaataacca
      781 aagatttgct tgaagaaatt ttgcttgaag cagatgtaag ttatgaaata gttgaagaga
      841 taatttatta tttaccacct caaaatgaag taaaaaaaga agatttaaag cgtgttatgg
      901 gttcttattt tctttatgaa aaaaaagaaa ccaatcaaga aaaacctttt gtagagctta
      961 ttttaggagt aaatggagca ggaaaaacaa caagtattgc caagcttgct tatttataca
     1021 aaaaccaaaa tcaaaaagtg attttagggg cgtgtgatac ttttagagca ggtgcgattg
     1081 agcaattaaa actttgggcg caaaaagtgg atgtagatat agttttaact gcacaagggc
     1141 atgatccttc agcggttgct tttgatacca tttctaaagc aaaagcaaag gattttgata
     1201 gagttattat cgatacagca gggcgtttgc aaaatcaaaa aaatttagct catgagcttg
     1261 aaaaaattgt aagaatttca aacaaagctt tagaaggcgc accccataga aaaattttag
     1321 ttttagatgg aacacaggga aatgctggaa ttttacaagc taaagctttt aatgagcttg
     1381 taaaacttga tggtgtgatt attacaaagc ttgatgggac agctaaaggg ggtgcacttt
     1441 ttagtatagc aagagagctt gagcttccta ttttttatgt aggcgtgggt gagcaaatga
     1501 cggatttaca agaatttaat gcaagtgctt acttagatac tttattagat cctatttttg
     1561 aataatggca aaaaataaag cactttttga atgtcaagct tgtggaaatc aacaaagcaa
     1621 atggcttgga aaatgtcctg attgtggagc ttgggatagt tttgtagaat taaaagctga
     1681 gcaaattaaa gttttaaaag agcttgcgca agttagtatg aaaacaagtg aggctgtttg
     1741 tattgaagat gtggagttag aacattttac aagatacagc acagatgata atgagcttga
     1801 tttggtttta ggcggagggc ttgttgaagg ttctttagtg cttataggcg gaagtccagg
     1861 tgtgggaaaa tctacacttt tgttaaaaat tgcttcaaat ttagctaaac agggtaaaaa
     1921 agtgctttat gtcagtggcg aagaaagtaa agctcagatt aaattaagag ctgatcgtct
     1981 tgaggctaat actccgaatt tatttttact tactgaactt tgccttgaaa atattttaga
     2041 agaattgcac aaaaaagatt atagcattct tatcattgat tctatacaaa ctttatattc
     2101 aaataaaatt acttcagtag caggaagcat cactcaagtg cgtgagatta cttttgaact
     2161 tatgcgtgtg agtaaggctt ataatatcag tacttttatc atagggcata ttactaaaga
     2221 aggtgctata gcagggccta gggttcttga gcatatggta gatgtggtgc tttattttga
     2281 aggagatgcc actaaagaaa tcagactttt aagaggcttt aaaaatcgtt ttggtggaac
     2341 gaatgaagta ggtatttttg agatgactgc taagggtttg atcagtgcaa aagatttggc
     2401 aaatcgtttt tttactcgtg gaaaggctat ttcaggaagt gctttaggtg ttgtgatgga
     2461 aggatctcgt gccttggttt tagaagttca agctttagtg tgcgaaagtt cttatccaaa
     2521 acgcagcgct acaggatatg aaaaaaatcg cttagatatg cttttggctt tgcttgaaag
     2581 aaaacttgaa attcctttag ggcattatga tgtatttgta aatattagcg gcggagtaaa
     2641 agtaagtgaa actgctgcgg atttggctgt ggttgctgcg attatttcaa gttttaaaaa
     2701 tcgccctttg agcaaagata gtatttttat aggggagctt agtttaaatg gagaaattag
     2761 agaggttttt agccttgata cgcgtttaaa agaagctaaa atgcaaaaat ttaaaaatgc
     2821 cattgttcct tctaagcctt tggaagatat agggcttaag tgttttgttg ctaaagaact
     2881 ttcgcaagtt ttagaatgga tgtaaatttt cattaaaata taagtaagat tttgctagaa
     2941 ttccgagttt agaataaaat ttttgaggaa accatgaaag atttattttt atttagctct
     3001 ttgcttgatg caagtcatac tttttcttat ttttttcaca taggtttggt agctttaatt
     3061 gctgttatag tggctatgat ggctactcgt tctatgcaac ttgttccacg cggtatgcaa
     3121 aatttaggtg aggctttttt agagggagtt ttatctatgg gtagagatac catgggaagt
     3181 gaaaaaggtg caagaaaata tcttcctttg gttgcaactt tggggattat agtgtttttt
     3241 agtaatatta taggtataat acctggtttt cacgctccaa ctgcaagttt aaatttgact
     3301 ttgtccttgg ctattatagt ttttgtatat tatcattttg agggtattag ggcacaaggt
     3361 tttgtaaagt attttgctca tttcatggga cctattaaac ttttagctcc tttgatgttt
     3421 cctatagaga tagtctctca tctttctcgt gtggtttctt tgtccttccg tttgtttgga
     3481 aatattaaag gcgacgattt atttttaatg gtaattttag ctttagttcc ttacatagct
     3541 ccacttcctg cttatgtgct tttaactttt atggcatttt tacaagcttt tatttttatg
     3601 attttaactt atgtatattt agcgggtgca actgttgttg aggaaggtca ttgatctata
     3661 ttttagaatt tttcaaaggt gcatctttag ctttaatgct ttttggtgca cttttcttct
     3721 tttttaaata taattctttt ttctatcttt gcttgggtat tataccaggt ttgcttttat
     3781 ctttaatttt tgttttactt atagaaaacc ataagctaaa aaatgaaaat aagttaagat
     3841 aaaagcaaaa aatagtttat tttctaagca tgaagctctt ctttaagcaa atgctttaca
     3901 gcttcataaa ttttaatagc cgctttggat ttattcatag tataaagatg aattccatct
     3961 acgccacttg tgattaaatc gacaatttga tcgcaagcat aagcgatacc tgcatcttct
     4021 aaagccaaag cattattttc atatttttct aaaattttaa caaatttagg agggatttta
     4081 gctccgcaaa gttgagaaat ttttaaaacc tgtcttttgt tagtaatagg cataatacct
     4141 gcgtaaatag gtatgtcaat acctgctaaa gcacaatttt gtttaaaagt ataaaaatct
     4201 tcattatcgt aaaaaagttg agtaatgagc ttgtctgttc ctgcatttac cttagtttta
     4261 agatggtgta tatcctcgat gaaattttta gattcattat gtttttcagg atagcatgcg
     4321 gcataaattt caaagtattc ttgttttttt ataaaagaaa ttaaatcact agcataagaa
     4381 aaatctttac ttttttctaa attttcacat atatcgcctc ttagagcaag aatttgatta
     4441 agattttttt ctttgcattt ttgaagtatc tgagtgattt tttctttact agaatggatg
     4501 caaggtaaat gcactatgct aggaatttga tattcttcct ggattaagct tgcaacttct
     4561 aaagtatttt gtgagttaat agagcctcca gctccaaagg ttacgctgat aaaattaggg
     4621 cttaattgcc ctaaatcatc taagatagca tgaagatttt tgatattttc atcctttctt
     4681 ggtggaaaaa cttcaaaaga aaaactacac atgaaaactc cttataattg ttctcgtatt
     4741 ttttgcgtag ccgtaactaa atttttaaga gaggctataa cttcttcata ggctcttgtt
     4801 ttaagtccgc agtctggatt gatccaaatt tgctccttag gtaatttgtt taaaattttt
     4861 tctatagtta aacttaattc ttctacgctt ggaactctag ggctatgtat atcataaact
     4921 cctggtccca cctcagtttt aaaacgaata gcttttaggg tatctaaaag acttaagttt
     4981 gatcttgaag cttcaaaaga aatcacatca gcatccatag cgtcaatttc ttttaagata
     5041 tcactaaatt cactataaca catatgagtg tgaatttgag ttttagcttt taccccgcta
     5101 tgcacaagat taaaagcagg aatagcccaa tctaaatact cactatgcca atcacttttt
     5161 cttaaaggca gtttttcacg caaagccgct tcatcaattt gtatgatttt tatacctgca
     5221 ttttcaagat ctaatacttc atctcttata gctaaggcaa tttgctcagt gctttctttt
     5281 agactgatgt cttctcttgg aaaggaccaa ttaagtatgg ttacaggtcc agttagcata
     5341 ccttttacga ttttttgact taaactttgt gcaaatttag accaagctaa ggtgataggc
     5401 tttgtgcgtg atacatcacc ccaaattaca ggaggcttaa cgcaccttgt gccatagctt
     5461 tgaacccagc cattttgagt aaataaaaag ccctttaaat tctctccaaa atactccacc
     5521 atatcatttc tttcaaattc tccatgcact aaaacatcaa gtcctatttc ttcttgaatt
     5581 tgtatgcatt ctttgatttt ttgttggtta aattcagtgt agttttgagc tgaaattttt
     5641 tcttgcttaa aggcaaggcg attagatctt acatcggcac tttgaggaaa ggaacctatg
     5701 gttgtggttg gtaaaagagg gagttttaaa aattcttttt ggattaaggc acgttcttta
     5761 aaactaggcg ttctggtaaa atcttctttt tttaaagcct taagccttgc tttgactttt
     5821 tcatctaaac gctctgggat atttttaaaa agctcttgat tggctctaaa gagcggattt
     5881 tcttcgctag aatttagaat ttcttttaaa tctttaagtt cttgaagttt ttctttagca
     5941 aaggcaaaaa gtttaagata gcttgaatct aatttgcttt caaattcagt gctataaggc
     6001 acatgcaaaa gcgaacaaga ggtgtttaag acgatatttt gtgtatattt ttgaagttct
     6061 ttaataagct ttaggctttt agcataatca ttagcataga tatttttgcc gttaataaga
     6121 cctgcaaaaa ggattttatc tttagcaaag ccgtattttt gaatcaaggc taagctttgt
     6181 ttaccttcga taaaatcaag acccaaagca tcaaatttgc tttctaaaag tttaggataa
     6241 atatctctta agtctccaaa atagctttga agtaaaattt taagatcttt tttgtgattt
     6301 aaaagctctt ggtaaaattc ttcaaacaaa gcgatatctt ccttgcttaa atcataaacc
     6361 aaataaggct catcaagttc aagccatgtt actttaagtt catttagttt atcaaaaagc
     6421 tctatgtaag cgtttaaaag cttttctttg gcgagttttt gagttttttc atctttaaag
     6481 gcaatgagtt taaaaagtgt gaaaatgcct attaaaacag gcttgctttc tatgccaagc
     6541 tctttagctt cgagatattc tttaaaaatt ttatcccctg ttaaagctat aatatcagca
     6601 ttatcgcact caggcaccaa ataatgataa tttgtattga accatttttt cattgctaag
     6661 gctgtaacat ctccattttc tccttgataa cctcgacttt gagcaaagta ttcatctaaa
     6721 gcatctaaat ttaaattttt atactttgta tgaacaatgt taaaaagcac agctgcatct
     6781 aagacattat cataaagtga aaaatcatta ctagggataa aatcaatgcc agctttttga
     6841 atttcttgcc agtgtctaat ccttaaatcc ttagcactct ttaaaagctc ctctttagaa
     6901 ctttggtttt taaagtattt ttcaatagca aattttaatt ctctatttgc acctattctt
     6961 gggtaagaaa tgattgaatt tttcatattt gttctcctta aaatgtaggg attaaagcac
     7021 cctgatattt ttcttctata aattttttaa cttcatcgct ttgcaaggcc tttactaggg
     7081 ctttgatttt aggaaggttt tcattacctt ctttaacggc gatgatattg ccatattcac
     7141 tatatttact ttctgtataa agcccatctt ttacagggtt taaacctact aaaatagcaa
     7201 aattgctatt aataagagaa taatctacat catctaaact ccttgtaagt tgagcgtctt
     7261 ttaactctac aaatttaagc ttcttaggat ttttagtgat atctaaagga gtgatgagct
     7321 cattatcctt aacttctata agtcctttgc ttgctacaat gcgtaaagca cgactttcat
     7381 ttgtaggatt attgggtata gaaatgcttt gtccttcctc ggggttaaat tttttatgtt
     7441 ttttagaata cactgccata ggttctatat ggatactagc aacttttaca agatgagtgc
     7501 cttgtctttg attgaattct tttaaataag gctcatgctg aaaataatta gcatctaact
     7561 caccattttc aaccattaca ttagggatta ccccatcatt gaattcataa atttttaaat
     7621 cataaccttg tttttgaagc gctgatttta taaatcttaa aatatctgca tgaggtgtta
     7681 tagaagagcc aactttaagt tcttcatttg cccatgcaaa actggtaaaa agagtagcga
     7741 cgcaaaaagc tttagtaaat aaagtcattt tttctccttt acgcaaattt aaatttttct
     7801 atcaagtcac tatgataaat acttgccaca tcaggatgag agcgtatcat tcttttaaaa
     7861 taattacttg caacatttct taaaagtgga ttttaggatc agtatccata cctttacttt
     7921 ctttagcaag ctctggattt aacttaaaaa taggtatatc cttatcaagc tgcactccaa
     7981 gaaaataagc tatgctaaag cgttcttttg ggcttaaatt cacgcggtga atagtagctt
     8041 ttaaatagcc attggtagct agttctaaaa attctcctat attaactaca acgctatttt
     8101 caagtggggg tatactaagc catttaccat ctataaaagc ctcaagtccg ctttgttttt
     8161 cttgaaaaac aaaagtgata agcccaccat ctttatgtga acctacgcct tgagtgatat
     8221 tttttgagct ttttggataa tgtatgattt tacaatgttc gtaagaattt tctccataaa
     8281 gtttatcaaa agcattgtta ggtagatcaa gagcttgagc gaaggctttt aaaagcttta
     8341 aacaagcttt tttggtttgt ttgtgccaag ttaagaaagt ttttttaagt tctggaattt
     8401 cactaggcca aagattagga ccttctagtc tttgccataa gggtgagttt aaattccagt
     8461 ttaaagcatc tctttctgtg cctatatcca gttgttctct ataatcctta gatcctgctg
     8521 tgtattcaaa accttcgcta gtataacctc taaattgagg agaatgtacc atagaaataa
     8581 gctctttcga acttctagaa agattaaaaa attctttgcc aagtttgaat aatttctcgt
     8641 ttaaattttt atctatactg gtattgataa gataaaaaaa acctatttta gaagcaattt
     8701 ctcttaaatt tttaagaaaa gtgcttttat ctttttcata agcttgtaaa tcaagtatag
     8761 gtaagttcat ttttgctcct taaattaaaa ttaaggataa gaagatattt tgaattaaat
     8821 tttatttaga gaaatttttg taagttaaga ttttaaatga gtattttgaa aaaataaact
     8881 tttttgactt tcttacacat tatatctcct tatccacttt ttggaccttt ggaaacataa
     8941 tgttaagcca aaggacgcac tagatactac acatctcgca catcagtttc attttttctc
     9001 cttttaaaat aataaaattt caaaatcata tataaaaata tattaattaa agcttaatcg
     9061 tctaaaaaat aaagattctt tttaagcatt ctcgagtttt aattctttgt tattcattat
     9121 gctaatacct agatttaaaa ccttttgggc aatttgtttg gcttcatcta aagaatgcat
     9181 tgcgcaagtt ccgcattgat agatattaag ttcaggaatt ttgctttgat cgcttacgct
     9241 taaaacatct ttcatagctt cttcccaagc ttttgcaaca cttttttcat ctggtgttcc
     9301 aattaaactc atataaaaac ccgtgcgaca acccataggt gaaatatcaa taatttcaac
     9361 tgaatttgaa ttaagatgat ctctcataaa tcctgcaaat aaatgttcta aggtatgtgt
     9421 acctttttcg ctcataatgt ctttatttgg tatacaaaaa cgcaaatcaa acacgctaat
     9481 atcatcaccc ttaggtgttt tcataacttt agctaaacgc acagcaggag ctggcatttt
     9541 agtatggtca actttaaagc tgtctaataa tggcatttta actccttaaa tataaattgt
     9601 ctaagaatta tagcatttaa agttaatatt taaagccttt ctaaaagaaa aaaagataaa
     9661 ataaaacatt taaaaattca aggaaatttt atgtttgaag tagttatagg tcttgaagtt
     9721 catactcagt taaatacaaa aacaaaaatc ttttgctcat gtgcaacttc ttttggagaa
     9781 gctccaaata ccaatgtttg tcccacttgt ttggccttac caggagcttt gcctgtttta
     9841 aatgaagagg ctgtaaaaaa agctatagct tttggaaaag ctgtcaatgc aacaattaat
     9901 aaaaaaagtg tttttaatcg taagaattat ttttatccag atttacctaa agcctatcaa
     9961 atttcacaat ttgatatccc tatagtagaa aaaggtgagc tttttatcaa tgtaaagggt
    10021 gaaaataaac gcataggtat tacaagagca cacttagaag aagatgcagg taaaaatatc
    10081 catgaaaata atttttctaa agtggattta aatcgtgcag gaactccttt gcttgagatt
    10141 gtcagtgagc ctgagcttag aagtagcgat gaggcggtgg cttatcttaa aaaacttcat
    10201 tctattatac gctttttaga tatttcagat gcaaatatgc aagaaggaag ttttagatgc
    10261 gatgcaaatg ttagtataag gcctaagggc gatacaaaac tttatactag agtagagatt
    10321 aaaaatctta attcttttcg ttttatccaa aaagccatag aatatgaggt aaaaagacaa
    10381 agtgaggctt gggaagatgg aacttacgaa caagaagtag ttcaagaaac cagacttttt
    10441 gatacaacaa atttagttac aagaagtatg cgtggcaaag aagaagcggc tgaatatcgt
    10501 tattttccag accctgactt gcttcctgtt ttgttaaaag atgagttttt ggatattaaa
    10561 attcctgaac ttcctgatga gaagaaagca cgctttatag acgagcttgg tataaaagaa
    10621 agtgatgccg aggttttaat cagttcttta gaaatgagtc gtttttttga aagtcttatt
    10681 tctcaaaatt taaattctaa gctttgcgta aattggttaa atactgaact tatgggactt
    10741 ttaaaaggag aattgactat agaaaattct cccgtagatg ctcaaaagct tggagtttta
    10801 attaaacgca tagaagatgg caccatcagt gcaaaagcgg ctaaagatgt cttagctttt
    10861 gtatttgaaa atactagcgt ggaaattgat gaagctatag aaaagctagg acttaagcaa
    10921 gtaagtgatg attcagccat agaagcggtg attgaacaaa ttttaaatgc aaatgccgat
    10981 aaggttgcag agtataaaag tggtaaagac aagctttttg gattttttgt gggtcaaaca
    11041 atgaaagaag gcaaaggagc ttttaatcct gcaaaagtaa atgaaatttt aaaaacaaag
    11101 cttggttgat gcgtatagcg gttattggtg cgggaaaatg gggcagtgct ttacatctag
    11161 ccttaaaaga aaatcacaat tgttttatta gttctttgca tcagcgtgat ttagaagatt
    11221 ttgttagcat aaaagaagct ttagaatgtg aatatcttgt ttttgcttta agttctcaag
    11281 ggatgcgtgc ttggcttaaa gaaaatttca tcaacaaggg acaaaaaatt ttaattgctt
    11341 caaaaggcat agaagatcaa agttgtcaat ttttagatga aattttttta gattttgtac
    11401 caaaagaaaa tttttgtgtt ttaagcggtc cttcttttgc tgctgaagta atgcaaaaac
    11461 ttcctactgc tttgatgatt agcgggataa atcaagagct ttgtaaaaaa tttgcaagtt
    11521 ttttccctga ttttattaaa acttatattg ataatgatgt tcgtggtgct gaaatttgtg
    11581 gtgcttataa gaatgtttta gcaattgcaa gtgggattag tgatgggtta aaacttggca
    11641 ataatgcaag agcggcactg atttcaagag ggcttataga aatgcatcgt tttggtaaat
    11701 tttttggtgc taaagaagaa acttttttag ggttaagtgg ggcaggggat ttgtttttaa
    11761 ctgcaacgag tgttttatca agaaattata gagtaggttt aaaactggcg caaaatcaaa
    11821 aattagatag tattttagtc gaacttaatg aagtagcaga aggtgtaaaa actgcttatg
    11881 ctatagaaaa actagcaaaa atgaaaggaa tttatacacc tattgtaaat gaagtagtgg
    11941 caatttttaa gggtaaaagc gtgcaagaag caacgcagag tttattaaag caaaatgatt
    12001 aaggaaaaat catgataatt aaaaatgcaa aaatttatgg agattcttta caagatatag
    12061 agattaaaga aggaaaaatt accaatattg gttctaattt acaaggcgaa gaaattttag
    12121 atgctaaagg tatgacttta cttccatctt ttgtggattt gtgtgtgagt ttaaaaaacg
    12181 ataaattttc tttagctaat ttagagcttt tagaaaatga gtgtctaaaa ggaggaattt
    12241 ctagtatagt tttgcgtgat tgcatggatt ttgatgaaga aagttttgct ttatttttac
    12301 aaaatttagc tcaaagaaag atgcaaattt tttcaagtgt gcgggttaag gatgcaaacg
    12361 gcaagcttaa aaatttagcc actcttttaa ataaaggtgc ttgtgctcta gaacttgaca
    12421 gctctttaga tgcaaatact ttaaaagtaa gttcacaata tgcttttatg aaagactctc
    12481 caatttttgt gcgttgttat gataaggatt ttgatgataa tggagtgatg aatgattgtg
    12541 aaatgagttt tgagctaggg cttataggca tgagtaaaat cgctgaaact agccagatag
    12601 ctaaaatgaa agaattggct aaattttata aaaataaagt tatttttgat cttttaagtt
    12661 tgaaagattc tttagtatta ttagatgaaa aggatttaaa acttgtaagc attcatcatc
    12721 ttatcaaaga tgatagtgct tgtgaagatt ttaatacggc tgcgaaactt atgccacctt
    12781 taagaagcaa agaagatgtt ttggctttaa gagaggcttt aaaagaagga aagattagct
    12841 ttttaacttc cctgcatagt gcaaaatcaa tttctttaaa agatttagct tttgatgaag
    12901 cggcttttgg aattcatagc gtatgcgaat ttataagtct ttgttatact tttttaatca
    12961 aagaaggatt tttaaattgg caagagcttt gtcgatttac aagtaaaaat cctagtgaat
    13021 ttttaggttt aaatagtgga gttatagaag ttggcaaaga agctaatcta gttctttttg
    13081 atgagaatga agaaattttt gctccaaaaa gttctcttta ttctgaggat aaactttttg
    13141 gaaagattaa aatgtatata attaaaggaa aaaatatttt agaaaaataa gctttactta
    13201 aattcccaaa gatagtttaa atcctaaaaa tacaagtgct gccataatac cagcggctgg
    13261 taaagtgata atccaagcca atcctatagg cttcatcata atccaatttg cgtttttatt
    13321 atacactcct atacccaata tagcacctat gagtatatgg gtggagctaa caggaattcc
    13381 aaattgtgta gctaagagta taactatgct tgcaccaagt tctgcagaaa atccagtagt
    13441 agggcgtatg gttgcaagtt ttgaacccac tgtagtaatc acttctttac ctaaaaacca
    13501 aagccctaca actagagcaa ctccaaacat agctaaagca gcaaaaggta caggagaagt
    13561 cgcgttaatt gtgccgtttt ttaagacatc taaaatcgct gcaaaaggac ctatagcatt
    13621 ggctatatca ttggctccgt gtgaaaatgc aaaactagag gctgtaaata tttgaaacca
    13681 tgagaaaatt ctatcagtag ttttattaag ttctgttttt ttaacgattt tgactatagc
    13741 aaatgttaca acataactta tagttcctat aattccgata atccaaaagt tttgtaaaat
    13801 atctaaagtg ctaacattat ttaaaccttt aaataaaaac attgccgaaa tgatagcagc
    13861 agcaatacaa gcaatgattg gcatatgagt ttttaaaata gagtaaatat ctatatcttt
    13921 ttcttgatcc ttaaattcct tcattttatt tctatagaaa ttattttctt gttcttcctc
    13981 atctaaagct atagcggaaa gttctttgat ttgttcttct tgggattttg tttttaaatt
    14041 taaaaagtat tcttctttga atttttttct ttcttttttg atatttttca aatcatcatt
    14101 tagtttttct gatggtttta aaattttctt atcaatatat gaataaataa tataagctac
    14161 aataccccct aaaagaggag aagctatcca agaaatagct attcttaaaa tttcactcca
    14221 tttaaccata gagagtgttt ggatcccatc aaattttaaa agccccatca taatgctagc
    14281 acctacaatt ccaccaacta tactgtgtgt ggttgataca ggtaagcctt tcttggttgc
    14341 aataaaaatc caaaccccag agcttaaaag tgcagcaagc ataatgataa caaaaagcat
    14401 aggatctaaa gaatttggaa aaataacaat accgctgcgt atggttttag taacttctgc
    14461 gcctgcgaag attgccccgc ttagctcaaa aacagctgct ataattaaag cttgtttaat
    14521 ggttactgtt tttgcgccaa cgcttgttcc aaaagaattg gctacatcat ttccacctat
    14581 attaaatgcc ataaaaatgc caaatataga agcaagaata aaaagaatca attgatgttg
    14641 cgaaatataa ccaaatcccc aaataacaaa tgcgatagta ctgataataa aaataacaaa
    14701 agctatgagg ttgtcttttt gcattaataa ccctttttta ttttaattat acacttattt
    14761 actttaaatt tgctaatttt attttttagt ctttgtggaa tttttattta tattattttt
    14821 ttataataaa tactcaaaca agaaataata aggaatataa gaataatgag gggtattttt
    14881 tatataatag cattgttttc tttactcaat gccgatgaac ttacagaggc tttagcaaaa
    14941 aataataatc aaaattcttg ggagcacttt gattatgaaa ataccaaaga agctccaaaa
    15001 attcaagaag agaatgtgga ttttaaaagc acttttgata gcttactttc aaaaacttta
    15061 gaaaataata atggtataga taaaacagat gggaatttgg attttcaaaa cgaaaacgcg
    15121 caggttaaaa atttaagttc tctttatgag ggggagaata attctttgct ttttcaaaaa
    15181 gaactttttg tggctcaaga taattataat tactcatggg gtttaatcaa tcgttatgaa
    15241 aaagatgatt ttttatttgg agttaatggt tttattgata aacaaaaaga acaaaaagat
    15301 actaaaagct ttggtacaga gtttggttat agtaaattta taaaggctta tagtaattat
    15361 tatataccca atgaagcaga aaaaaattta cagcttggaa tgagttttgt aattccaact
    15421 tataccgctt ttgcttttga tataagtaag gataatgata aaactaatta tcaagtatct
    15481 tactctcctt atagtgtatt tagtttaaat ttattgcgtc gtgattatag tgcaagagag
    15541 actgttgatg atactgttgt tcaagttgga tttagtttta atttcaatga aagtttttta
    15601 aagcaattta gaaaaaaaga taatacttta gaggaggtta atcgatatga tttcctccaa
    15661 agaacccatt agttcattcc agcattatgg aatttttctg gattatccat agcatagcgg
    15721 aatttttccc aatcaatttg tttatcccag atggcaacga ttaaggctgc tactgaattt
    15781 ccacaaagat ttccaaccgc tctcatttca gacataaatt tgtcaacacc taaaagaata
    15841 cctatagcag ttactggtag aacttgtgct aaggttgcat ttgcttctga aatttccata
    15901 tctcctagag ccgcaagcgt acttccaagc actataaaac ctgatccagt tacacctact
    15961 gcaccttttg aggctatcat taatactatt aaaatactga tttcgtgtgc taaacttaaa
    16021 tttacattga aagcttgtgc tagaaagatt aagctcatag ctagataaat atttgtacaa
    16081 tcaagattaa aactatatcc cgttggtaaa acaagtccga ctgttgcttt agaaagtcct
    16141 gctttttcta gttttctcat taaaggagca agtgcagact cgcttgaact ggttgcaaaa
    16201 acgatcaata cttctcttga gataaatctc ataaatttga agatatttac ttttgcaaaa
    16261 taacaaatca gacctaagat tccaaatata aaaacaagac atgaaatcag cattactaaa
    16321 agtaaatatg ctaagttgat caaagagcca attccgtatt gagctatgag tacagccatt
    16381 gctgaaaagg cggcaatagg actaaaatac ataatgattt gtagaatttt aaaaacaaaa
    16441 ttttgtgcca cttcaaaaac tctttgaatt gcctgtttat cttctattct cattaaagaa
    16501 ataatcaaag cagtaattat agcaataact aaaacttgta tggtttttcc ttctgtaaaa
    16561 ggcgtgataa tatcagtagg catagcatct tttaaaatat gcataatctc agagctcgca
    16621 cttacttctg tggtttgaga aatgtatttt tgaacgcttt ttgtatcaag ttgacttgga
    16681 tcaagattca ttccatggcc tggttgcata acatttgcca taaaaatacc tatagcaagt
    16741 gctaaagtac ttacaacttc aaagtaaata accgctttag caccaatgct acctactttt
    16801 tttaaacttt caagactaat gatgcctaaa accaaagtaa caaaaataat aggacctata
    16861 agaaccttta aagcacctat aaaataatca actcctggtt tgctagcaat ggctaattct
    16921 ttatctatat agccaagtac aatacctgca ataatgccta taatcaccca aaatccaaga
    16981 cttttgataa tacgtttata taaaggcggt tttctttcag ctaaagtttg acttaaagtt
    17041 tccaagttta ttcactcctt ttgatctttg taaaatataa ttttaacaat gcgtattgta
    17101 aattttaaca aaaaaacaaa tctagaaata ctttctttta tatgatatga
//
LOCUS       DAEDTT010000021        16977 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.021, whole genome shotgun sequence.
ACCESSION   DAEDTT010000021 DAEDTT010000000
VERSION     DAEDTT010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16977
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.021"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..462)
                     /locus_tag="KLC54_000559"
     CDS             complement(<1..462)
                     /locus_tag="KLC54_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HBD9176958.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNVKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKSLGF"
     gene            complement(459..938)
                     /locus_tag="KLC54_000560"
     CDS             complement(459..938)
                     /locus_tag="KLC54_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HBD9176959.1"
                     /translation="MSEFKIIDLRQEDLDILQEMIIEFAKYEDMLDFLQCTKEKLEHS
                     LLKNKFARAFLLKENEKTIGYMIYFYTFSSFWGSGGIYLEDIYIREDFRKKGYGKAVF
                     KFLGEICKKENLKRLDWVCLNDNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            1069..1203
                     /gene="rpmH"
                     /locus_tag="KLC54_000561"
     CDS             1069..1203
                     /gene="rpmH"
                     /locus_tag="KLC54_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HBD9176960.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            1200..1526
                     /gene="rnpA"
                     /locus_tag="KLC54_000562"
     CDS             1200..1526
                     /gene="rnpA"
                     /locus_tag="KLC54_000562"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HBD9176961.1"
                     /translation="MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            1523..1864
                     /gene="yidD"
                     /locus_tag="KLC54_000563"
     CDS             1523..1864
                     /gene="yidD"
                     /locus_tag="KLC54_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HBD9176962.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRILRCNPFFKGGFDYPRVSKNFYPMNLCFKPIFLAKKQLCFLYIPYKNKSFY
                     LIKIIFKRTNQ"
     gene            1861..3453
                     /gene="yidC"
                     /locus_tag="KLC54_000564"
     CDS             1861..3453
                     /gene="yidC"
                     /locus_tag="KLC54_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HBD9176963.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVVYDYFFIPKQPLKIEQNIT
                     QQNQQNTSINNTPNIQNTTTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DKKYQNEKGEFINLVSKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDANKNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGVTMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKQAEHEK"
     gene            3450..4268
                     /locus_tag="KLC54_000565"
     CDS             3450..4268
                     /locus_tag="KLC54_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HBD9176964.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFASSKNHKPETHEPKQENKIEIKNEKNKIQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYNEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQSVIKK
                     IKIHGRGQTKPLDGVLIKIALEQLRAEFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            4261..5589
                     /gene="mnmE"
                     /locus_tag="KLC54_000566"
     CDS             4261..5589
                     /gene="mnmE"
                     /locus_tag="KLC54_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HBD9176965.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DAIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYLNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            5600..7786
                     /gene="purL"
                     /locus_tag="KLC54_000567"
     CDS             5600..7786
                     /gene="purL"
                     /locus_tag="KLC54_000567"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HBD9176966.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGDIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPMRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVMGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPTSEPKYLSEIKNYKFE
                     LKSSIQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGKLGASVIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGESLGEFGGSMVMKIQDKKVSGSLKELDYKAELALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGANLTSDFDDEKMIFDESASRAIIGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDSIELSKAELDKLYFESFKEQIQ"
     gene            7783..8553
                     /locus_tag="KLC54_000568"
     CDS             7783..8553
                     /locus_tag="KLC54_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HBD9176967.1"
                     /translation="MTLVLIILVVLVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERMDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSTKKELSLDEAFAILELPNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEELKIGVEKFQKINEAYEKVKKHLER"
     gene            8556..10088
                     /gene="purH"
                     /locus_tag="KLC54_000569"
     CDS             8556..10088
                     /gene="purH"
                     /locus_tag="KLC54_000569"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HBD9176968.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFRANFKALKSEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            10187..11779
                     /locus_tag="KLC54_000570"
     CDS             10187..11779
                     /locus_tag="KLC54_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HBD9176969.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     DTVSTSVFQTMRMAMNLGDPEKIKEAIEDAKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENVNGVVHLRLIRPLIADESCVACHANANVGSVIGVMDI
                     SHSLEGVQKDISKTSQSYIIIFTIALIFTLCVVLLMLKVVVGKPVLELLNHAKELAQG
                     SGNLKARISVKGQDEIALACGYINQFIEKTHKAVSGASHNSKNVEKQSNLLNSNAISL
                     SDISSQSHKQIDQSFKLGANVGNELGELASLSNKANSANEKSFLLLEQMLKSLFNVAN
                     KVSTVSQNENELAKKVENMVNQAGNIQKATQMMDEIADKTNLLSLNAGIEAARAGAFG
                     RGFSVIAEDVRQLAQNSEEFLGNVAQITKELLQSINEVSAELKKNAQSVQALNDDTAL
                     LVDDANEVKLCNEDARALVTQCTEKIKISQENIQNLLSRMQENVEVSEKNEEISKILL
                     QVADELKIVCHNLESELNQFQI"
     gene            11789..12223
                     /locus_tag="KLC54_000571"
     CDS             11789..12223
                     /locus_tag="KLC54_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HBD9176970.1"
                     /translation="MKKTLQIALAAAFFAGCASTSVTSSTSKGNNELVQNQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGTFKISNENGKLVLSNDEMKIFFK"
     gene            12322..13299
                     /locus_tag="KLC54_000572"
     CDS             12322..13299
                     /locus_tag="KLC54_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agamatine deiminase"
                     /protein_id="HBD9176971.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKAVS
                     EFQKVLLIAPKQSDFENFKDIKNVEYFKCDTNDTWIRDFGAIDIVENGRFKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDTKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLIELPIPKPLYYEGRRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPNHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            13296..14183
                     /locus_tag="KLC54_000573"
     CDS             13296..14183
                     /locus_tag="KLC54_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HBD9176972.1"
                     /translation="MSLQKKATFVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKKQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            14180..15052
                     /locus_tag="KLC54_000574"
     CDS             14180..15052
                     /locus_tag="KLC54_000574"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HBD9176973.1"
                     /translation="MKIALIQQKFHSNKEQTIKKTCEFIEEASKQGAELICLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLITSLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFDKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGVEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFADLTKRFID"
     gene            complement(15064..16410)
                     /locus_tag="KLC54_000575"
     CDS             complement(15064..16410)
                     /locus_tag="KLC54_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HBD9176974.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHHENLEQKNENQHYAKLEY
                     EQNVSILPQFAYDINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNATNNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNAGTPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFPIYSEDGKFFFESRIGAIYPYYKEDKNYFYGKIGSKKYKISKKDVSKFP
                     LQFNDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSAAQKNSFN
                     HFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYVGQIADNNIAIHNIWGLRKDTT
                     QRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYLENIQNK"
     gene            16459..>16977
                     /gene="pif1"
                     /locus_tag="KLC54_000576"
     CDS             16459..>16977
                     /gene="pif1"
                     /locus_tag="KLC54_000576"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HBD9176975.1"
                     /translation="MLDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSALDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSASVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKL"
BASE COUNT         6110 a         2127 c         3086 g         5654 t
ORIGIN      
        1 aaatcccaag cttttaaatg tgtattctcc tagacaaagc aaaaaagcag gttgaatcag
       61 ttttagttcg ttccagaaaa atggtaagca agattgtagc gaaaaatcat caaattttcc
      121 attacaaaaa catttaaata gataagaaaa ataaaaatct tcatcgcaaa gccctaaaat
      181 ttgataaata tagtgtttta atttttcacc tttttttgaa ttaagtaaaa ttccactttc
      241 attttcactc ttttgcccaa aaacatcaag aattagcaat ttgacatttt ttatcttagg
      301 ctccataaga ctaaattttc ttgttttgga aaattggcat aaggtgcaag atgaaacaag
      361 ttgttttaat tcttgaaaat tttgtacttg ttcaaaatgg tttgtatgtg tatcaacaaa
      421 gttaaacccc atagctttta aataataaag acttcttatc ataaatcaca caatttttct
      481 aaattttctc cacttagacg ataatttctc cattgtttaa gatgtttagc gtttaaactt
      541 tcataaaaat taatacctaa aatattatca tttaagcaaa cccagtcaag tctttttaaa
      601 ttttcttttt tgcaaatttc tcctaaaaat ttaaaaacag cttttccata acctttttta
      661 cgaaaatctt ctcgtatata aatatcttca aggtaaattc caccgctgcc ccaaaaagac
      721 gaaaaagtat aaaaataaat catatagcct atagtttttt cattttcttt taacaaaaaa
      781 gcacgagcaa atttattttt tagtaaagaa tgttccagtt tttctttcgt gcattgaaga
      841 aaatctaaca tatcttcgta ttttgcaaat tctatgatca tctcttgtaa aatatctaaa
      901 tcttcttgtc ttaaatcaat aattttaaat tctgacattt ttaacctttt aaaaataatt
      961 tcaaaattta tcaaaagaat ttaaaaatta ctcttaatca aaagcaattt ataagtaaga
     1021 ttaagataaa atacaagttt attttataat tttttaagga aaaatcaaat gaaaagaact
     1081 tatcagccac atggcactcc aagaaaacgc actcatggtt tccgtgttcg tatgaaaact
     1141 aaaaatggtc gcaaggtgat caatgcaaga cgcgctaaag gtagaaaaag acttgctgtg
     1201 tgaaaaattt tgataaattt agcacaaacg aggaattttc atctgtatat aaagtaggta
     1261 aaaaatggca ttgcgaaggt gtgatcattt tttatctgaa tagttatgaa aaaaaaatag
     1321 cagttgttgc tagtaaaaaa gttggaaaag cagtggttag aaatcgttca aaacgaattt
     1381 taagggcttt gtttgctaag tttgaaagat atcttcaaga tggcaaatat atttttgtag
     1441 ctaaaaatga aatcactgaa ctttcttttt ctaggttaga aaaaaatcta aaatggggat
     1501 tgaaaaaact agaatgtttc aaatgatatg cctaaaaata ctccgttttt atcagaaatt
     1561 cttaagccct ttaaaacccg ctgcttgtag gtattatcct agttgttctg agtatgcgct
     1621 ttggcagttt caaaaaaaga atttttttct agcttttttt tctacttttt ttagaatttt
     1681 aagatgtaac ccttttttta aagggggttt tgattatcct agagtttcta aaaattttta
     1741 tcctatgaat ttatgtttta agcctatatt tttagcaaaa aaacaacttt gttttttata
     1801 tataccttat aaaaataaaa gtttttatct tataaaaatc atctttaaaa ggacaaatca
     1861 gtgaataatt caaataatat ttttcagcaa aagcgtatac ttttggctgt tgtgatttct
     1921 tttttatttt ttgttgttta tgattatttt ttcattccaa agcaaccttt aaaaatagaa
     1981 caaaacatta cacaacaaaa tcaacaaaac acaagcataa ataacactcc taatatacaa
     2041 aataccacca caaatactcc aagtgcagct ttagtttcgc aagatagtgt gatatctaag
     2101 gttcaaagca agcattttga agcacaaatt gactcttttg gtagaatttc tgctttttat
     2161 ttaaaagata aaaaatacca aaatgagaaa ggagaattta taaatcttgt tagcaaggaa
     2221 aatagtcctt atcctttaga aatgcgtttt agtgatccaa gtattaactc agaggctttt
     2281 aaaattcctt atgttgctaa cgctagcaat ctttttgttg atgaaaatgg aagtcaagtt
     2341 ttaaaactca ctcaaaatct ttctggattg aaaatcgaaa aagatattac tttttatcca
     2401 aaaggaaatt atgagataga agttaaactc agcaagaatg caaattattt tataagtcca
     2461 ggatatcgtc caaatattgc cgtagatagt tatacagttc atggtgcttt ggtaatggat
     2521 aataaagaaa ccatcgaaac ttataaagat ggagatgtag aaaaggatga aagtgctaat
     2581 aatgtcgtaa tgacttcggc ttttgataga tactatgcaa ctttctttta taattttgat
     2641 aaacctttaa atgtggcaat tagcaaggat gctaataaaa accctatagt ttttgcttat
     2701 agtgataatg aatttaaagc agggggttat ataggttcta aagaacatgt gattttaaga
     2761 agtatagatc cacgccttga agcagttgtt gaatatggtt ggtttacttt tattgctaag
     2821 cctatgtttg agtttttgaa tttcttgcat cagtatatag gaaattgggg ttgggctatc
     2881 gttgtgatga ctttaattgt gcgtattatt ttattcccgc taacttataa gtctatgatt
     2941 tctatgaata aacttaaaga tcttgctcct aaaatgaaag atattagaga gcgttacaaa
     3001 ggcgatccac aaaaaatgaa tatgcacatg atggagcttt ataaaaaaca tggtgcaaat
     3061 cctatgagtg gttgtttgcc tatactttta caaattccta ttttctttgc tatttatcgc
     3121 gttttgctta atgctattga gttaaaagca gctccttggg cgttttggat acatgattta
     3181 tcggtaatgg atccttattt tattttgcct attttaatgg gtgtaacgat gtttttacaa
     3241 cagcttatta cacctatgac tatacaagat cctatgcaag ctaagattat gaaattttta
     3301 ccagtgattt ttactttttt ctttatcact ttcccagcag gacttacgct ttattggttt
     3361 gtaaataacc tttgttcttt ggttcaacaa tgggttatca ataaaatatt tgccaaagaa
     3421 catcacaaaa aacaagcgga gcatgaaaaa tgaaaatcga agccattgat cttcaaagtg
     3481 ccttaacaga agcttcaaga agtttagaat gttctgtgat ggacttagaa tatgagatta
     3541 ttcagcatcc aagaaaaggt ttttttggat ttggaagaaa aaaggcaatt atagaggcta
     3601 aagcaaaaaa aaggattttg aaaaaaaatc ctaaaaaaga atttgcaagt tcaaaaaatc
     3661 acaaaccaga aacacatgag ccaaaacaag aaaacaagat tgaaataaaa aatgaaaaaa
     3721 ataaaattca aaaagaaaaa tacacagtaa aaagtgatga aatttttgat agttttcatc
     3781 gagaaagcaa aggagtgcgt aatactcagg atattttaga tgagattcgt attcagcttg
     3841 taaaactttt agaaagctcc cagtttaaaa tagagcttag tgaacttaga atgtataatg
     3901 aagattgtgt tttgattcga ttggatgggg aagatgctgc tttgatgata ggcaaagaag
     3961 cgcatcgtta caaggctatt tcttatcttt tgcataattg gatcaattta aaatataatc
     4021 ttttagtacg ccttgagatc gctcaatttt tagaaaatca aattcaaggt atgcagcttt
     4081 atttacaaag cgtgattaaa aaaattaaaa ttcatggacg cggacaaacc aaacctttag
     4141 atggggtttt gataaaaatt gctttagagc agttaagagc tgaatttcca gataaatatg
     4201 taggaattaa gcaaaataat gatcaaagat ttgttgtaat aaacgacttt ttcaaaaaag
     4261 atgagtgata ctatagcggc tattgccaca gctcatggtg tgggttcgat ttctattgta
     4321 agattaagcg gtgaaagggc tttagaattt gccttaaagc ttagccacaa aaccaaactc
     4381 accccccgcc atgctacttt tacaaaactt tttaatcaaa ataatgaaat tattgatgaa
     4441 gctataatga tatattttaa agccccttat agttttacag gggaagatat agtagagttt
     4501 caaactcatg gaggatttag tgtgagtgaa gttttactcg aagaacttgt aagtttagga
     4561 gcaagacttg ctttagcagg ggaatttagc aaaagagcgt gtttaaatgg taaaatgact
     4621 cctttaaaag ctttaaatat acaagatctc atactttcaa aatctgcact tgcagctaaa
     4681 attatagcac gcaacatgca aggaaactta ggagaacttt tagaaaaaat tcgcacagat
     4741 ttggttaaaa ccttggcttt tgtagaaact agcattgatt atgctgatga tgatttacct
     4801 tctgatttat tagagcaaat ttctactatg tgtgaagaaa attctaaaat tttaaaagaa
     4861 atttatacgc tttctcaaag caaaaaagga ctcatagaag gttttaaaat cgctattgta
     4921 ggtaagccaa atgtaggcaa atcttcgctt ttaaatgcct tgctttctta tgaaagagct
     4981 attgtttcag atatagcagg caccactcgt gatactatag aagagagctt taaattagga
     5041 acgcatttat tacgcattat agatacagcg ggtattaggg aaagtaaaga tgctatagaa
     5101 caaatcggcg tagctttaag taaaaaaagt ttagaagatg cagatattat tttggcagtc
     5161 tttgatgctt caagagtgca agataaagaa gatgagaaaa tttttgactt attagcaaat
     5221 actgataaaa aaatcttttg gattttaaat aaaagtgatt tagaaaatgt tttcaaaaat
     5281 actcaaaata aaaattttat caagcttagt gctcaaaaag atatcacttt gttaaaagaa
     5341 gaattgcaaa attatcttaa ttcttttgat agcgaaggta ttatggtaag ttctttagat
     5401 cttattaatg cttgcaaaat ttcaagtgaa gcgattttta gagctaaagg acttttagag
     5461 gaaagttctt tagaactttt tgcttttgaa cttaatttag ctattaatga acttgcaaga
     5521 tttaccaaag attttcaaag agatgaaatt ttagacgaaa tgtttggtaa tttttgttta
     5581 ggaaaatgaa aggataaaaa tggataaaga aaccataaaa gcacataaaa tcagcgatga
     5641 agaatatgca caaattttag aaattttagg acgagaacca aatctgttag aacttggggt
     5701 tatttctgcg atgtggagtg agcattgctc ttataaatcc agtaaaaaat atcttaatgg
     5761 ttttccaact aaagcacctt gggtgattca aggcccagga gaaaacgcag gggttattga
     5821 tatcgggcaa ggtatggcag cagtttttaa agtagaaagt cacaatcatc ctagctttat
     5881 cgaacctttt gcaggtgcgg ctacaggagt agggggaatt ttgcgtgatg tttttactat
     5941 gggtgcaaga gtggttgcgg ggctaaattc tttaaaattt ggcgatattc atgatgaaaa
     6001 atgtggcaaa catcaaaaat accttgttaa aggcgtggta aatggaattt ctcattatgg
     6061 aaattgcatg ggtgtgccaa ctataggtgg agaatgtgct tttgatgagt gttttaatgg
     6121 aaatatctta gttaatgcct ttgctttagg ggtttgtaaa agtgaagata tcttttatgc
     6181 taaggctgaa ggtgtaggaa atcctgtgat ttatgtgggt tcaaaaacag ggcgtgatgg
     6241 acttggtgga gcggttatgg caagtgatag cttcaatgaa gaaagcaaat ctttgcgtcc
     6301 tacagtgcaa attggcgatc ctttcagtga aaaacttctt atggaggctt gtttagagct
     6361 ttttaaaacc gattatattg tgggtattca agatatgggt gctgcagggc ttacttcaag
     6421 ttcttttgaa atggcaggaa gaagtggcag tggcatgaaa ctttacttag ataaaactcc
     6481 tatgcgtgaa agcggtatga ctccttatga gttaatgctt agcgaatctc aagaaagaat
     6541 gcttatttgt gcgaaaaaag gctatgaaga taaggttata gaaattttca aaaaatggga
     6601 tttagatgct gtggttatgg gtgaagttac caatacagga aaaatggagc ttttttggca
     6661 tgatgagctt gtagggctta ttcctatcga gcctttaagt gaaaaggcac cgattttaag
     6721 ccgtcctaca agcgagccaa aatatttaag tgaaattaaa aattataaat ttgagttaaa
     6781 atcaagcatt caagagcttt ttatacaaat gcttcaaaat gaaaatatta ataataaagc
     6841 ttttatttat gatcaatttg attcaagcgt gcaaaccaat accataaaag ctgatggaaa
     6901 attaggtgct agtgttattc gtatcaaaga aaatggtgca agtgtggcta tggctataga
     6961 atgtaattca cgcttaaatt atgtaaatcc taaaatagga gcagctttag cagtagcttc
     7021 tgcaggaaga aaagttgctt gcacaggagc taagcctttg gcaataagtg attgtttaaa
     7081 ttatggaaat ccgcaaaatc ctgaagtgat gtggcaattc gcacaaggtt gcgaaggtat
     7141 taaagaagct tgtaaagagt taaatactcc agtagtaagc ggcaatgttt cactttataa
     7201 tgaaactgaa ggcgtaagta tttatccaag tcctactata gtaagcgtag gggttttaga
     7261 agatgcaaat aaaaccttaa aagctagttt tgaaaaagaa aatttaagcg tttatctttt
     7321 gggtgaaagt ttaggagaat ttggcggatc tatggtaatg aaaatccaag ataaaaaagt
     7381 atcaggaagt cttaaagagc ttgattataa agctgaactt gcactttggg atttgcttta
     7441 taaagccaat caaaattctt tacttgagtg tgccaatagc gtaggaatag ggggtattgc
     7501 tatgactttg gcaaaaatgt ttgctatttc tagtgtgggt gcaaatttaa caagtgattt
     7561 tgatgatgaa aaaatgattt ttgatgagag tgcaagtcgt gctataatag ggcttagtaa
     7621 agaaaatgaa gaagcttttt taaatttagc taaagaattt ggagtaaaag cttataaatt
     7681 aggtgtgagt acaagccaaa aacattttaa acttgatagc attgagttaa gcaaggctga
     7741 acttgataag ctttattttg aaagttttaa agagcaaatc caatgacttt agttttaatt
     7801 atactcgttg ttttggtgtt ttactggtat tataaaactt ggggaaaaca ggatttttta
     7861 aactcagcta caagaggagc caaaggcttt gctaagggtt ttgctcgtgg ggttatggaa
     7921 gaaagaatgg atgagtttaa aaggcgtatg aattactatg ttatcgcact tttggcaaaa
     7981 attgcaaaaa gcgatggcag ggtaagtgaa aatgaagctg aaatgatcaa agatctttta
     8041 gatgcaaatg ccaaagatga aaaagaaaga gcttttttaa aagcaagttt taacgaacat
     8101 aaagaaaatt taagcgatgc tttttatgtg gcaaaagatt ttttaaaaga agtgcctttg
     8161 cctaaaaatg agcgttttaa tgtcttgcgt gtgcttgttt ttatggcttt aatcgatgca
     8221 gattttaatg ctaaaaagcg tgaaatttta gagcaaatcg ctaaagcctt tgatatagca
     8281 aaaagcgaac tagacgcttt tatagcaagt ctttcaaatt taaaaagtac taaaaaagaa
     8341 ttaagtcttg atgaagcttt tgctatttta gaacttccaa ataatgcgga tttaaatgcg
     8401 gtaaaaaaac aataccgcaa tttagcaaaa aaataccatc ctgatatttt aaatgcaaac
     8461 aatgttagcg aagaagagct taaaatcggc gtagagaaat ttcaaaaaat caacgaagct
     8521 tatgaaaaag ttaaaaaaca tttagaaagg taaaaatgag agcattactt agtgtgagtg
     8581 ataaagaagg catagtagaa tttggcaaag agcttgaaaa tttaggtttt gagattcttt
     8641 caactggggg gacttttaag cttttaaaag aaaatggaat aaaagttata gaagtgagtg
     8701 attttacaaa gagtcctgag ctttttgaag ggcgtgtgaa gactttgcac cctaagattc
     8761 acggtgggat tttgcataaa agaagcgatg aaaatcatat caaacaagca aaagaaaatg
     8821 aaattttagg cattgatcta gtttgtgtaa atttatatcc ttttaaaaaa actaccatta
     8881 tgagcgatga ttttgatgaa attatagaaa atatcgacat aggcggacct gcgatgataa
     8941 gaagtgcagc aaagaactat aaagatgtga tggtgctttg cgatccactt gattatgaaa
     9001 aagtgattga gactttaaaa aaaggtcaaa atgatgagaa ttttcgttta aatttgatga
     9061 taaaagctta tgagcataca gcaaattacg atgcttatat tgcaaattat atgaatgaac
     9121 gctttaacgg aggttttgga gcgagtaaat ttatagtagg acaaaaagta tttgatacaa
     9181 aatatggaga aaatccacat caaaaagggg ctttatacga gtttgatgcc ttttttagag
     9241 caaatttcaa agcccttaaa agcgaagcaa gttttaacaa tctaaccgat attaacgcag
     9301 ctttaaattt agctagtagt ttcgataaag ctccagctat tgctatagta aaacatggaa
     9361 atccttgcgg ttttgctata aaagaaaatt tagtacaaag ctatatacat gctttaaaat
     9421 gcgatagcgt cagtgcttat ggaggagtgg ttgcaatcaa tggaactctt gatgaggctt
     9481 tagcaaataa aatcaatgaa atttatgtag aagtaatcat tgcagccaat gtagatgaaa
     9541 aagctttagc cgtgtttgaa ggtaaaaaac gcattaaaat tttcactcaa gaaagtccgt
     9601 ttttaattcg cagttttgat aaatatgatt ttaaacatat tgatgggggt tttgtatatc
     9661 aaaacagcga tgaagtaggc gaagatgagc ttaaaaatgc aaagcttatg agtcaaagag
     9721 aggcaagtaa ggaagaatta aaagatcttg aaatcgctat gaaaatagca gcatttacca
     9781 aatcaaacaa tgttgtttat gtaaaaaatg gcgctatggt ggctataggt atgggtatga
     9841 caagtagaat cgatgcagca aaggcagcaa tcgctaaagc taaagaaatg ggacttgatt
     9901 tgcaaggttg cgttttagca agtgaagcct tttttccttt tagagatagc atagatgaag
     9961 caagtaaagt aggggttaaa gctatagtag aaccaggcgg aagtataaga gatgatgaag
    10021 tggtaaaggc ggctgatgag tatggtatgg cgctttattt tacaggagta agacattttt
    10081 tacattaagt ttaatggaat gttatgtttt ttacacataa ttcaataaaa attaaataaa
    10141 ttatgtgtaa aatatttccg aaaaatttta tttttaggaa actatgatgt ttaaaactat
    10201 aggatttaag gtttctgctg caatttttgt ggtgttgctt ataagtttta ttgtaatgca
    10261 agtgatttta aatttggact ttaaaaatac tgccaataaa atgagcaggg caaatttaga
    10321 taccgtaagt acttctgttt ttcaaacaat gagaatggct atgaatttag gagatcctga
    10381 aaaaattaaa gaagccattg aagatgcaaa aagtatagag ggtattagtg atattaaaat
    10441 ttatccttca aaagatacta tagatctttt tgagatgaaa gcccctcaaa tttcaaatga
    10501 taagcgtatt atagaacaat tttcaaatcc taaaattcaa gctttagaag aaaatgtaaa
    10561 tggtgttgtg catttaagat tgatacgccc tttgattgca gatgaaagtt gtgttgcttg
    10621 tcatgcaaat gctaatgtag ggagtgtgat aggggttatg gatatatcgc attctttaga
    10681 aggtgttcaa aaagatataa gtaaaaccag tcaatcttat attataatat ttactattgc
    10741 tttgattttt accctttgtg tggttctttt aatgcttaaa gttgttgttg gaaagcctgt
    10801 tttagagctt ttaaatcatg ctaaagaatt agctcaagga agtggcaatt taaaagctcg
    10861 tatttcagtt aaaggtcaag atgaaattgc tttagcttgt ggatatatca atcaatttat
    10921 cgaaaaaact cacaaggcag ttagcggtgc aagtcataat tcaaaaaatg tagaaaaaca
    10981 aagcaatctt ttaaattcaa atgctatttc tttaagtgat atcagttcac aaagtcataa
    11041 gcaaatagat caaagtttta aacttggtgc aaatgttggc aatgaacttg gagaacttgc
    11101 tagtttgtca aataaagcaa atagtgccaa tgaaaaatcc tttttattat tagaacaaat
    11161 gcttaaatct ttgtttaatg ttgctaataa agtatcaaca gtatcccaaa atgaaaatga
    11221 attggctaaa aaagttgaaa acatggtcaa tcaagcaggt aatatacaaa aagcaactca
    11281 aatgatggat gagatcgcag ataaaaccaa tttactatcc ctaaatgctg gcatagaagc
    11341 agctagggct ggtgcatttg gacgaggttt ttctgtaatt gctgaggatg ttaggcagtt
    11401 ggctcagaac agtgaagaat ttttgggaaa tgtagctcaa attacaaaag agcttttgca
    11461 aagtattaat gaggttagcg cagaattaaa gaaaaatgct caaagtgtac aagctttaaa
    11521 tgatgacacc gctttattgg ttgatgatgc taatgaggtt aaattatgta acgaagatgc
    11581 tagggctttg gtaactcaat gtactgaaaa aataaaaatt tcccaagaga atatacaaaa
    11641 tttactttct cgtatgcaag aaaatgttga agtaagtgaa aagaatgaag aaatttctaa
    11701 aattctgctt caagttgcag atgagttaaa aatagtgtgt cataatctcg aaagcgaact
    11761 taaccaattt caaatttaaa ggaataaaat gaaaaaaacg cttcaaattg ctttagcagc
    11821 agcttttttt gcaggttgtg ctagtacttc tgttacttca tctacttcta aaggtaataa
    11881 tgaacttgtg caaaatcagc ttttcaaaat agaaaaaatt atagttaatg gtaaaacttt
    11941 tgatccaaaa aacgcagagg aaagtccaaa tatcagtttt gaaaataata aattttatgg
    12001 ttattcagga tgcaatcgtt tttttggttc ttaccaaact aaggcggata ctttacaaat
    12061 cgaaggtgat cgcgtagctt caactcaaat gctttgtcac ccaatggatg taatggattt
    12121 tgaaaattct ttcctttcaa atttcaaagg aacttttaaa atttcaaatg aaaatggaaa
    12181 acttgtttta agcaatgatg aaatgaaaat cttttttaaa taatacccta aagcctcgaa
    12241 atatcgaggc aaacttctta aatttgacaa aagtctaaaa aatgatacaa ttataatttt
    12301 attatcaaaa aaggtagtta aatgataaaa tcaattcctg aatggagtga gcaagaatac
    12361 ctcatgcttt ctttacctca tgaaaaaagc gattggaatc cctacttaga ggaaatttta
    12421 caaagttata aagaatttgt aaaagcagtg agtgaatttc aaaaagtttt acttatagct
    12481 cctaaacaga gtgattttga aaattttaaa gatataaaaa atgtagagta ttttaaatgt
    12541 gataccaatg atacttggat acgtgatttt ggagctatag atatagtgga aaatggtcgc
    12601 tttaaggctc ttgattttac ttttaatgct tggggaaata aatttcaaag cgagcttgat
    12661 aatgctgtaa attctaagct ttttaaagaa aaatttaaag aggagcttaa aaaggttgat
    12721 tttattttag aaggaggaag tattgacttt aatggagagg gtgtgatgct tacaagctct
    12781 cattgtcttt taaatgaaaa tagaaattct catctaaaca aaactcaaat tgatacaaaa
    12841 ttaaaagaaa tttttggctt aaaacaaatt atttggctag aaaatggttt tataaaaggt
    12901 gatgatacag atcatcatat cgatacctta gcaagattta tagataaaaa taccatagcg
    12961 cattgtattt gtgaagatga agaggatgag cattatttgc ctttacaaaa aatgaaagaa
    13021 gagcttaaaa aaacaggctt tgatttaata gaacttccta tacctaagcc tttatactat
    13081 gaaggaagaa gattgggggc gacttatgcg aattttgttt ttataaataa tgctttaatt
    13141 gtgccttttt acaaggataa aaatgatgaa atcatagcta aaagactttc taaagcttta
    13201 cctaatcata aaattatagg agtagatgca agagtgtttt tacgacaaaa cggttctttg
    13261 cattgttctt gtcaaaatcg tttcaaaggt ttaagatgag tttgcaaaaa aaagcaactt
    13321 ttgtagcaag tttatgtgct attgttttag ccttggttaa atttatagta ggcttaacaa
    13381 gtggttctgt tgcagtgctt tcaagtgcga ttgattcttt aatggatttt gctatttctg
    13441 cttttaattt tttagctctt aaaaaaagct cacaaaaggc gaatgaaaat tataattttg
    13501 gtttttctaa aattgaagct ttaatgggtt tgttagaagg tgtttttata gttggcgtgg
    13561 ggatttttat tttttatgag agtattttaa agatttatta taaagaagaa attaaagatt
    13621 taaattcaag catctatgtg atgatttttg ctttaattat gacttttttt cttgtacttt
    13681 ttttaaatta tgtagctaaa aaaaccaaaa gtttgattat agaaagtgat gctttgcatt
    13741 acaaaacaga ttgcttaacc aatgcttgta ctttaggggc tttggttttg atttatttta
    13801 caaatttaca tattattgat gctatttttg ggatagtgat cagtctttat acggcgtttt
    13861 ctgcttttaa aatcattaaa aaagctttgg cttttttaat ggatgaggct ttacctaaga
    13921 aacaagtgga taaaatttgt actttgattt ctaataatcc tgaaataatt tcctatcatg
    13981 aattaaagac gcgtaaaact ccaagttgta attatttaag cgtgcatttg gttttttgcc
    14041 ctataatttc gcttttaaat gcgcataaaa tttcagatga aatagaagaa ggtgtgcgta
    14101 agatgtttga aaatgaaaaa tgggatatac aaattcattt agatccttat gatgatgcag
    14161 aacaagaaag gcaaagacaa tgaaaatcgc tttaatacaa caaaaatttc actcaaacaa
    14221 agaacaaact ataaaaaaaa cttgcgaatt tatagaagaa gcctctaaac aaggagctga
    14281 gcttatttgt ttgggagaac ttcatcaaag tgagtatttt tgtcaaagtg aaaatgtgga
    14341 tttttttgac tatgctaatg attatgaaaa agatgtgaaa ttttgggcaa atatagctag
    14401 aaaaaatcaa atagtgctta ttacttcatt atttgaaaaa cgaagtgctg gactttatca
    14461 taatactgca gtggtttttg aaaaagatgg ttctatagca ggcaaatatc gcaaaatgca
    14521 tatacctgat gatccttgtt tttatgaaaa attttatttt actcctggag atttgggttt
    14581 tgaacctata aatacaagtt taggcaagct tggagtgctt atttgttggg atcagtggta
    14641 tcctgaagca gcaagaatta tggctttaaa aggagctgag attcttattt atcccacggc
    14701 aattggttgg tttgataagg ataaagatga agaaaaacaa agacagctca atgcttggct
    14761 tggcgtacaa aaaggacatg ctatagctaa tggtttatat gtagtagcta tcaatagagt
    14821 aggttttgaa aaagatgtaa gcggggtaga agagggcatt agattttggg gaaattcttt
    14881 tgtttttggc cctcaaggtg aagaactttg tcttttagat tctcaaaacg aatgtgtaaa
    14941 aatcatagaa atagataaaa aaagaagtga aaatgtgcgt cgttggtggc cttttttgcg
    15001 agatagacgc atagaatatt ttgcagattt aactaaaaga tttattgatt aaatcaataa
    15061 atcttatttg ttttgtatat tttcaagata gctttttatt tgctcttttt cttgttcgtt
    15121 taaatttata aaacttattt ctttaagtct tgataaaagc aaattatctt ctaaaatttc
    15181 attttttcct atttctaaag aagtgatgac gctagaactt atgagaagtc tttgggttgt
    15241 atcttttctt aagccccata tattatgtat agcaatatta ttatctgcaa tttgtcctac
    15301 ataaagcata atatgtccag gtaaataaag taaactaaga taagctttcc caaagcggtt
    15361 taaaaaatct tttttttgag aattgctaag agtgcttata tcaaaatgat taaaagaatt
    15421 tttttgtgca gctgaatttc ttggtagata aagtccaaaa gctgaaaaga tatcacgagt
    15481 tagtaaagaa caatctcttt caaaattata accgccccag ccataaggca aatttaaaac
    15541 ttgtgaaagt tgatttttta aatttttatc attgaattgt aaaggaaatt tagatacatc
    15601 ttttttagaa attttatatt ttttagagcc tatttttcca taaaaatagt ttttatcttc
    15661 tttgtagtaa ggataaatag cgccaattct actttcaaag aaaaatttac catcctcgct
    15721 atagatagga aatttttctt ttagcggtgt gataaagttg agattttcat agattttcgc
    15781 tctatcgttt gagaaaaatt ccaaattttt actttcaaca aatccaaatc cagcttcacc
    15841 taaaacaaaa gcataacgct tatctttact aaaatgtgaa attaagacag gggttccagc
    15901 atttaaaatg ccatcgcttg catagtcaaa aggaattcct tcattttcaa aaaaaggatt
    15961 ttttaagata gctctttggg ttggaagatt tttaatgatt gtattttgga taattaaagc
    16021 tttttgatta agtttgccaa attcttggat atttgcgtta tttgtagcgt ttttaaacca
    16081 tgaaagtgga ataatttgtt tattgaaaaa ataataagta ttttttgaat ttaaatataa
    16141 gggaaaggac caaaaaatat tttgtccttt gtaattttta aacgaatcat gccaagggtt
    16201 aaagaaatat tttttatatc gttttgcatc aaaattaata tcgtaagcaa attgtggcaa
    16261 aatgcttaca ttttgttcgt attcaagttt tgcataatgt tgattttcat ttttttgttc
    16321 taaattttca tgatgaagtg aagttaaatt ttttgttgaa caagctgtta aaaatagcac
    16381 tataaaagta aaatataaac aagatttcat aatcaacctt ttagaaaaaa tagttataat
    16441 taaagccaag gaaatataat gcttgataaa ctagaaaaaa ttttagctta tgataatgtt
    16501 tttttaagtg gtggtgctgg agttggtaaa agctttttga caaatgagct tatcaaatct
    16561 tatagaaaac aaaaaaaatt agccatagct cttggttcta gtgctctatc ggcgtttaat
    16621 ataggcggtg ttaccttaca cagctttttt tgtttaggat attgtgatga tatgatgaaa
    16681 ttaagcgcat tggatcgcaa tcaaaaacaa aaagaaaaat taacaaaact taaagagctt
    16741 ttaaaaacga ttgagcttat tattatcgat gaaatttcca tggttagcgc aagtgttttt
    16801 gaaatgatag gctttagact taaaaattct caatttaatg gaaaaatttt agttgtagga
    16861 gatttttttc aactgcctcc cgtaattaaa gaaaaaaaag aaactttatt taatcattct
    16921 tattatgctt tttcttcatt tttttggcaa gatttaaatt ttaagaatat taaactt
//
LOCUS       DAEDTT010000022        16807 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.022, whole genome shotgun sequence.
ACCESSION   DAEDTT010000022 DAEDTT010000000
VERSION     DAEDTT010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16807
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.022"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..228
                     /locus_tag="KLC54_000577"
     CDS             <1..228
                     /locus_tag="KLC54_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HBD9176976.1"
                     /translation="KISALQNINSDDLKVQALLTRPFTKNFDQKLEGQVKNGILSIAL
                     PKLDKGRWELKLKFYANQETVGFFSYELNAQ"
     gene            225..2591
                     /locus_tag="KLC54_000578"
     CDS             225..2591
                     /locus_tag="KLC54_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HBD9176977.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLALLEKNSFYDDLSLPKNYTLNKDFLDEYEAIVY
                     DLQGFLSKFEENLLSEISQIKEVVLSFKTSKFNLEYLLKLDFLKTFDLKINTYYEINL
                     SKQEILKEEIFKTKNSKIKLKSFELRALQCAFVMDEISHFVRKGLKPENIVVITPDES
                     FCEFLRLFDKDNMLNFASGISIKESLFYQKFQALYESASSASFVYKNQEDYFEDTQMI
                     FDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFEKLLALFLENEKQELVYLIRKELYFIK
                     DLLKNQSLTLKELIHLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDFNEE
                     FIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSK
                     SRFLDELDFDFFYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFALSFSR
                     FNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHKMLEIYYKNYANNDFDIKV
                     FANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEHFSKGFYVAHTELELNNILKLGT
                     DSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSYQLAFYQALYDENANVGFYDLNSMQ
                     ILHQKAKSLDELRERLKDLVLMSKEEIEFENEQDEHCPYKLIYKKELK"
     gene            2588..5353
                     /locus_tag="KLC54_000579"
     CDS             2588..5353
                     /locus_tag="KLC54_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HBD9176978.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDVKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNLPKIPNPSKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     FIDEFQDTSVIQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDSLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQKI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCTLKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIVKRSEESVNGNYPSYFKGGFLNIYSQERGFLE
                     SKEQILSVKKESIQALQKFEKISPQEVQSEEKLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQMLTQRCKSKFRHFLDESDFEKLFKRIEILLKNTQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLALKDEEAFIIDYKTGLAMQDKHKEQVRTYKIAISEILKKDKVRAFIVYCLEN
                     EIQILEI"
     gene            5437..5862
                     /gene="rplM"
                     /locus_tag="KLC54_000580"
     CDS             5437..5862
                     /gene="rplM"
                     /locus_tag="KLC54_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HBD9176979.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            5865..6254
                     /gene="rpsI"
                     /locus_tag="KLC54_000581"
     CDS             5865..6254
                     /gene="rpsI"
                     /locus_tag="KLC54_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HBD9176980.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            6379..7338
                     /gene="cadF"
                     /locus_tag="KLC54_000582"
     CDS             6379..7338
                     /gene="cadF"
                     /locus_tag="KLC54_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HBD9176981.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRPAPQTKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            7338..7979
                     /locus_tag="KLC54_000583"
     CDS             7338..7979
                     /locus_tag="KLC54_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HBD9176982.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLAYREIYAQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKRLNKTQENAY
                     MIGDTILDIQAAISANITPLALACGYGNENELKAYSMVFLNAYEAVNYIARLN"
     gene            8072..11632
                     /gene="nifJ"
                     /locus_tag="KLC54_000584"
     CDS             8072..11632
                     /gene="nifJ"
                     /locus_tag="KLC54_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HBD9176983.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPERVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIVDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            11656..11967
                     /locus_tag="KLC54_000585"
     CDS             11656..11967
                     /locus_tag="KLC54_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HBD9176984.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKEIKFQYDNLEIAIQINKNDKINI
                     N"
     gene            11945..13357
                     /gene="mshL"
                     /locus_tag="KLC54_000586"
     CDS             11945..13357
                     /gene="mshL"
                     /locus_tag="KLC54_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HBD9176985.1"
                     /translation="MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAK
                     YCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGI
                     NTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
                     KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIID
                     VSILAVSLNESHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDS
                     IINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESYNN
                     YSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSS
                     VVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKVTEIVFIITP
                     SIVDSVNAPSLKDLGFKHYE"
     gene            13350..13958
                     /locus_tag="KLC54_000587"
     CDS             13350..13958
                     /locus_tag="KLC54_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD9176986.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAMLESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFELKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
                     QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR"
     gene            13962..14549
                     /locus_tag="KLC54_000588"
     CDS             13962..14549
                     /locus_tag="KLC54_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HBD9176987.1"
                     /translation="MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKY
                     NKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYKELEEVKAVQENTHISKIE
                     IDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWTLKANELDKQKQDSW
                     LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
     gene            14539..16098
                     /locus_tag="KLC54_000589"
     CDS             14539..16098
                     /locus_tag="KLC54_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HBD9176988.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLHKLNLGDKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLACAIRENQDKTILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            16095..>16807
                     /locus_tag="KLC54_000590"
     CDS             16095..>16807
                     /locus_tag="KLC54_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HBD9176989.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYFMYSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFV
                     IFIVMLILAYKNFHSFAFS"
BASE COUNT         6199 a         1967 c         2970 g         5671 t
ORIGIN      
        1 aaaatttctg cattacaaaa tataaattct gatgatttaa aagttcaagc tcttcttaca
       61 agaccattca ctaaaaattt tgatcaaaag ttagaaggac aagttaaaaa tggaatttta
      121 agtatcgctt tacctaaact agataaaggt agatgggagc ttaagctaaa gttttatgca
      181 aatcaagaaa cagtgggttt ttttagctac gaattaaatg ctcaatgaaa ttaagaattt
      241 ttagttcttc aagacaaatt agagagtatt ataaccaaaa aaaacagcaa aatgctttat
      301 tagatagtgc tattcatata ggtgaatttt tagataaagt ttgtttgagc aattttcata
      361 aggcaagttc ttatgaaagt ttgcttttaa tgcaagaagc ttgtctaaaa agtaaggatt
      421 tagaaaaaaa actaggaatt tcggtagaat tttttgcttt tttgaaaaat aacgaatatc
      481 ttttttcttt ttttaaagaa cttagtttag aaaaaaaaag catagaagat cttaaaaaca
      541 atgattatta tgctacctat aatgaacatt tggaaatttt agatgaggta tataagaatt
      601 atcttgcttt gcttgaaaaa aattcttttt atgatgatct ttctttacct aaaaattaca
      661 ctcttaataa agatttttta gatgagtatg aagctatagt ttatgatttg caaggttttt
      721 tgagtaaatt tgaagaaaat ttattaagtg aaatttctca gattaaagaa gtggttttaa
      781 gttttaaaac aagtaaattt aatcttgaat atcttttaaa acttgatttt ttaaaaacat
      841 ttgatttaaa aataaacact tattatgaaa tcaatctttc aaaacaagag attttaaaag
      901 aagaaatttt taaaacaaaa aattcaaaaa ttaaactcaa atcttttgaa ttaagggctt
      961 tacaatgcgc ctttgttatg gatgaaattt cacattttgt acgcaaaggt ttaaagcctg
     1021 aaaatattgt agttataact ccagatgaaa gtttttgtga gtttttaagg ctttttgata
     1081 aagacaatat gcttaatttt gcaagtggga ttagtattaa agaaagttta ttttatcaaa
     1141 aatttcaagc actttatgaa agtgctagta gtgcttcttt tgtttataaa aatcaagagg
     1201 attattttga agatacgcag atgatttttg attatcacaa tacgctttta cattctttaa
     1261 agcttgattt tatagagttt aaaaagtatt ttgatgagaa atgtgatttt gaatattttg
     1321 aaaaattact tgctttattt ttagaaaatg aaaagcaaga gcttgtttat ttgatacgaa
     1381 aagaacttta ttttattaaa gatttattga aaaatcagtc tttaactctt aaagagttga
     1441 tccatctttt tttcatgcaa atttcacaac tttcccttag tgatgtaggc ggaggtaagg
     1501 ttacggtaat gggactttta gaaagtcgtg ggctttgttt tgatggggta attttggttg
     1561 attttaatga agaatttatt cctaaaagaa gtgttaatga acttttttta aacaatgaag
     1621 tgcgtaaaaa agcaggattg attagctatg atagaagaga aaatttacaa agattttatt
     1681 atgaaagctt gatgaagaat gctttagaag taagtatttg ctttgtggaa aatgaagaaa
     1741 aaagcaaatc acgtttttta gatgaacttg attttgactt tttttatgaa actcatatcc
     1801 atcaaaaagc ttatcttaat gctttaaaat tagactatga aggcataaaa cctaatctaa
     1861 ctcctataaa agctcctatt ttaaagcata atcctttcga gtttgcgctt tcttttagtc
     1921 gttttaattt attggaaaat caaaaaagaa cttattatta tcgttatatt ttaaatttag
     1981 cagaacctag ggttttaagc gaggaaagca aagcgaaaaa tcaaggaaat ttcatccata
     2041 aaatgcttga aatttattat aaaaattatg caaataatga ttttgatata aaagtttttg
     2101 caaatttatt ggataaagaa tatcaaaaat acaatattag cgaacttgat cttgaagtat
     2161 ttaaattaaa atttatacaa tttgctaaaa atgaaaaaga gcatttttca aaaggctttt
     2221 atgttgcaca tacagagctt gagttaaata atattttaaa gctcggaaca gatagtataa
     2281 aacttaaggg cactatagat cgtatcgata gttcaaaaga aggcaatttg atcattgatt
     2341 ataaaagtgg aaaagtacca agtaattctt atcaacttgc tttttaccaa gccttatatg
     2401 atgaaaatgc aaacgtgggt ttttatgatt taaatagtat gcaaatattg catcaaaaag
     2461 ctaaaagttt agatgagcta agagaaagac ttaaagattt ggttcttatg agcaaggaag
     2521 aaatagagtt tgaaaatgaa caagatgagc attgtcctta taaactcatt tataaaaagg
     2581 aattaaaatg agtcaatttg agcctttttt ggcattagaa gcgagtgcgg gaagcggaaa
     2641 aacctttgcc ttgagtgtgc gttttgtagc acttatttta aaaggagcta ggattaatga
     2701 aattttagct ttaactttta ctaaaaaagc tgctaatgaa atgcaaaaaa gaattattga
     2761 gactttttta aatttagaaa aagaaaataa aaccagtgaa tgcaatgaac tttgcaagct
     2821 tttaggtaaa gataaagaag agcttatttc tttaagagat gttaaaaaag aagaattttt
     2881 aagaacagag ttaaaaatca gtacttttga tgcttttttc ggaaaaattt tgcgtgtttt
     2941 tgctttaaat ttgggcttaa gtagtgattt tacaatgagt gaagagagac ttgatgtaag
     3001 agagattttt ttaaaacttc ttaaaaaaga tgaattaaaa gatttggctt attatattaa
     3061 tttagttgat gagaaagaaa atttttttaa cgagcttgaa aaattttatg agaatgctta
     3121 ttttcaaaat cttcctaaaa ttccaaatcc atctaaagct tatatcaata aagcctatag
     3181 tgagttaaga agttattgtt tgggtcttac tcatgtaaaa aattataaaa atttgtgtga
     3241 caatttcaaa agtgaagttt tagatttatc cgtgtttatg caatcaagtt ttatgacaaa
     3301 atttgaaagt acaaaatatt tacaagattt agaaagtact aacttgcatt ttagtgcaaa
     3361 aagaatggag cttataaatg ctttaaatac ctatgccata gagcttgaaa attataaaat
     3421 tgctaattta atgaatcttt taaatcatta tagtgaagct aaaaatatat ttcataaaga
     3481 taaaaatacc ttaaatttcc aagatgtgag taaaaaagtt tatgagttaa taaccagtga
     3541 atttaaggat atgatttatt ttcgtttaga tggttttatt tcgcatttgt ttattgatga
     3601 atttcaagat acaagcgtga tccaatatca aattttacgc cctttgatcg ctgagcttgt
     3661 ttcaggagaa ggggttaaga aaaatcgcac ttttttttat gtaggagata aaaaacaaag
     3721 tatttatcgc tttcgtaaag gaaaaaaaga attatttgat ttgttaaaac aagaatttag
     3781 tcaaattaaa agtgatagtt taaatactaa ttatcgttct aaagagcttt tggttgattt
     3841 tgttaatgaa acttttaaag aaaaaatcaa agattataaa gagcaatttg ccttagaaag
     3901 taaaaaaggc ggttttgtgc gtattgtgga atctaaagaa caaaaggtta aaaaccaagc
     3961 ccaagaaatc aaggaaaaga ctttagaaac tttatttgag caaattaatt ttttaagatc
     4021 taaaaatatt tcttatgatg atatttgtat tttgtgttgg aaaaatagcg atgcagatat
     4081 ggttttggat tttttaagag agcaaaaaat tcctgcattt actcaaagta atgttttact
     4141 tgaaaataaa gcaagcgtaa ggcttgtttt agaatatgct aaatattgta tttttggtga
     4201 tgagttttac ttggtatttt taaaagaact tttaggtttt gagccgagaa aaatcaccct
     4261 tgatttttca aaaaatgcta tggaaaatgt acttttttta ataaaggaat taaaacttga
     4321 tttaaatgat atcgctttaa tacaatttat cgaatatgct aaaactaagg agaatttttt
     4381 aaagctttta tttgagcctt gtactttgaa aatagtaagc gaacaaaata tgggaattag
     4441 tattatgagt gtgcataaat ctaagggttt ggaatttgat catgtgattt tgcttgatag
     4501 tttatctaaa aacaattcaa acaatgaaga tatcatgctt gaatatgata tcaatcaagg
     4561 ttggcaactc catattaagg ataaaattcg agagcttact aaagagccta tttataccct
     4621 ttttaaagaa aatattacaa gagcaaatta tgaagatgat atcaataaac tttatgtggc
     4681 ttttacaaga gctaaggaaa gtttgataat cgtaaaaaga agcgaagaaa gtgtaaatgg
     4741 aaattatcca agttatttta aggggggatt tttaaatata tattctcaag agagaggttt
     4801 tttagaaagc aaagagcaaa ttttaagtgt taaaaaagaa agtattcaag ctttacaaaa
     4861 atttgaaaaa attagcccac aagaagttca aagtgaagaa aagcttgata gtaaagagct
     4921 atattttgga aatgcttttc acttttttat gcaaaattta aaacttccta agggtgaaaa
     4981 ttttcaaatg cttactcaaa gatgcaagag caaatttaga cattttttgg atgagagtga
     5041 ttttgaaaag ctttttaaaa gaattgaaat tttacttaaa aatactcaat ttcaaaattt
     5101 gattggtgat ggaaagcttt taaaagaaca agctttgagt tttaatggag aaattaaaca
     5161 attagacttg cttgccttaa aagatgaaga agctttcata attgattata aaacaggtct
     5221 tgctatgcaa gataaacata aagagcaagt aagaacttat aagatcgcca ttagtgaaat
     5281 tttgaaaaaa gataaagtgc gtgcttttat agtttattgt ttggaaaatg aaattcaaat
     5341 tttggaaata taaactttat ttttacttaa attaagtaaa aattaatatt attttttata
     5401 caatcacatt ttaaattttt ggcaaaggta aaaattatga caaagataac aaagccaaac
     5461 gaagtaaaac gagaatggat tgttttagac gcagaaggca aacgctttgg tcgtctttta
     5521 actgaagtag caacaatttt gagaggtaaa aacaagcctt gctttactcc aaatgttgat
     5581 tgtggtgatt atgtaattat catcaatgct tcaaaagctg tatttacagg tgctaataaa
     5641 gcagaagata agctttatca tagacattca ggatattttg gaagtgtaaa aagcgaaaaa
     5701 tttggtgatt tacttgaaaa aaatcctgca aaattatata aattagcagt tagaggtatg
     5761 cttcctaaaa caaatttggg cagagctatg cttaaaaaat taaaaatcta tgcgggtagt
     5821 gagcacccac acactgcgca aattgctaaa gaaggaaaat aatcatggca acaacatacg
     5881 caacaggtaa gagaaaaact gctatcgcaa aggtatgggt aaaaccaggt agtggtaaaa
     5941 ttagtgttaa tggtgttgat ttaaacactt ggcttggtgg acacgaggcg attaagctta
     6001 aagtggttca acctttactt gtgactaaac aagaaacttc aatggatatt aaagcaacta
     6061 ctttaggcgg gggctatagt gctcaagctg aagctttaag gcatggaatt tcaagagctt
     6121 tagcagctat ggatgctgat tttagagcct tattaaaacc taaaggactt cttactagag
     6181 atagtagaac tgttgagcgt aaaaaatatg gacgccgcaa agcaagaaga agtccgcaat
     6241 tctctaaacg ttaatatttt tggtgggatt ttcccacctt tctacaattt tttataaaac
     6301 tcatcctttt ttctgtcatt tatgatataa ttgcaaaatt taaattttta ttttataaca
     6361 caatgaaagg ttttttctat gaaaaaaata ttcttatgtt taggtttggc aagtgtttta
     6421 ttcggtgctg ataacaatgt aaaatttgaa atcactccaa ctttaaacta taattacttt
     6481 gaaggtaatt tagatatgga taatcgttat gcaccaggga ttagacttgg ttatcatttt
     6541 gacgattttt ggcttgatca attagaattt gggttagagc attattctga tgttaaatat
     6601 acaaatacaa ataaaactac agatattaca agaacttatt tgagtgctat taaaggtatt
     6661 gatgtgggtg agaaatttta tttctatggt ttagcaggtg gaggatatga agatttttca
     6721 aatgctgctt atgataataa aagcggtgga tttggacatt atggcgcggg tgtaaaattc
     6781 cgtcttagtg attctttggc tttaagactt gaaactagag atcaaattaa ttttaatcat
     6841 gcaaaccata attgggtttc aactttaggt attagttttg gttttggtgg caaaaaggaa
     6901 aaagctgtag aagaagttgc tgatactcgt ccagctccac aaacaaaatg tcctgtagag
     6961 ccaagagaag gtgctttgtt agatgaaaat ggttgcgaaa aaactatttc tttggaaggt
     7021 cattttggtt ttgataaaac tactataaat ccaacttttc aagaaaaaat caaagaaatt
     7081 gcaaaagttt tagatgaaaa tgaaagatat gatactattc ttgaaggaca tacagataat
     7141 atcggttcaa gagcttataa tcaaaagctt tctgaaagac gtgctaaaag tgttgctaat
     7201 gaacttgaaa aatatggtgt agaaaaaagt cgcatcaaaa cagtaggtta tggtcaagat
     7261 aatcctcgct caagcaatga cactaaagaa ggtagagcgg ataatagaag agtggatgct
     7321 aaatttattt taagataatg aataaaacta ttttatttga tttagatggc actttaattg
     7381 attctactga tgctatttta aattctttcc aaggagcttt taaagccctt ggattaactt
     7441 ctaaaaataa tgaagaaatc aaaaatctca taggttatcc tttagagcaa atgtttagaa
     7501 tgctttatcc agataaagta aatttaagta aagaatttgt attagcttat cgtgaaattt
     7561 atgcacaaat ttatttagaa caaactactc ttttgcctaa agcaaaagaa gcattagaac
     7621 ttggaagcga aattgcagat cttggtatag ttacaacaaa aggaggtaaa tttactccga
     7681 ttttacttga ttatttggga gttaaaaaat tctttaaaac tttaattact cttgaagatg
     7741 tcacaaatcc aaagccaagt tccgaaccta taattttagc cttaaaaaga ctcaataaaa
     7801 ctcaagaaaa tgcctatatg ataggcgata caatactaga tattcaagct gcaatttctg
     7861 ctaatatcac tcctttggcc ttagcttgtg gctatggcaa tgaaaatgaa ttaaaagcct
     7921 attctatggt atttttaaat gcatatgagg ctgttaatta tatagctaga ttaaactaat
     7981 ttcaagtttt cgttaaacgc cttttaagag aatttatagt aaattgatag ctaaaaaatt
     8041 ataaaaatta tcaatataaa ggaaggtctc aatgggtaaa attatgaaaa ctatggacgg
     8101 aaatgaggct gctgcatacg ctgcgtatgc ttttactgaa gttgctggaa tttatcctat
     8161 tacacctagt tctcctatgg ctgattacac cgatatgtgg gcagctgcag gcaaaaaaaa
     8221 tctttttgga gttcctgtaa aaatcgtaga aatgcaaagt gaagcaggag ctgcaggtag
     8281 tgtgcatgga tctttacaag ctggggcttt gacgacaact tatacagctt ctcaaggatt
     8341 actccttaaa attccaaata tgtataaaat agcaggtcaa ttactcccct gtgtaatcca
     8401 cgtagcagcg cgttctttgg ctgctcaagc tttgtctatc tttggtgatc atcaagatat
     8461 ttatgcagca agacaaattg gttttgctat gctttgttcg cattctgtgc aagaaaccat
     8521 ggacttagct ggtgtagcac atttagctgc gattaaggga agagtgccat ttttacattt
     8581 ttttgatggt tttagaacaa gccatgaaat tcaaaaagtt gaagtgatgg attatgcgca
     8641 ttttgataga ttattagata gagaagcttt gcttgaattt agaaataatg ctttaaatcc
     8701 agaaaatcca aaaacacgcg gaacggcaca aaatgatgat atttattttc aaactagaga
     8761 agtaagcaat cgtttttatg atgctttgcc tgatgttgtt aatgaatata tgcaagaaat
     8821 ttcaaaaatt acaggtagag aatacaagcc atttacttat tatggtcaca aagagccaga
     8881 gcgtgtgatt gttgctatgg gttctgtaac tcaagcactt gaagaggtag tggactatct
     8941 taatgctaag ggtgaaaaag tagggatttt aaaagtttat ctttatcgcc catttagttt
     9001 aaaatatttc tttgatgtta tgccaaaatc agtgaaaaaa attgcagttt tagatagaac
     9061 caaagaacca ggaagtcttg gggaaccact ttatcttgat gtaaaatcag ctttctatgg
     9121 aagagaaaat gctcctgtta tagtaggtgg aagatacgga ctttcttcaa aggatgttga
     9181 tcctgctcaa atgatagcag tatttgaaaa tcttaaactt gataatccaa aagatggctt
     9241 tactgtaggt atagttgatg atgtaactca tacttcactg agtactggag agaaaatttc
     9301 acttggagat gaaagtacga tcgaatgttt attttacgga cttggtgctg atggaactgt
     9361 gggtgcaaat aaaaactcga ttaaaatcat cggggataaa acggattttt acgctcaagc
     9421 ttattttgct tatgattcta aaaaatcagg gggttataca agaagccatt taagattttc
     9481 taaaaaacct atccgttcaa cttatcttgt ttcaactccg cattttatcg cttgttcggt
     9541 agcggcttat ttggaaattt atgatgtttt agcaggaatt cgcaaaggag gaactttcct
     9601 tttaaatagt atttggaatg ctgaagaaac cataagacaa cttccagatg cagtaaagaa
     9661 aactttagct gaaaaagaag taaattttta tatcatcaat gcaaccaaac tagctcgtga
     9721 tataggtttg ggaaatcgta caaataccat tatgcaatca gcctttttca aacttgcaaa
     9781 aatcattcct tatgaagacg cacaaaaata catgaaagag cttgcgtata aatcttatag
     9841 taaaaaaggc gatgctattg tagaaatgaa ttacaaagct attgatgtgg gggctgatgg
     9901 acttgtaaaa gttgaagtgg atccaaattg gaaaaattta gagcttaaag aaaaagaaca
     9961 aaccaatgcc tataaaggca ctgaatttgt tgaaaaaatc gtaaaaccta tgaacgcagc
    10021 taagggtgat gatttacctg tttcagcttt tttaggttat gaagatggaa gttttgaaca
    10081 cggcacaacc gaatacgaaa aacgcggtgt tggggttatg gtaccaagat ggatagaggc
    10141 aaattgtatt caatgtaatc aatgcgcttc agtttgtcca catgctgtta tcaggccatt
    10201 tttgattaat gatgaagaaa tggcaaatgc acctcgtgga gtaaaagatc atgctttaga
    10261 agctaaagga accaaaggag aaaaattaag ctttaaaatc caagtttctc cacttgattg
    10321 tacaggctgt gagctttgtg ttcatgagtg tcctactaaa gaaaaatctt tggttatggt
    10381 accacttcaa gaagagatgg attttggtga gcaagaaaat gcggattatt tatttaaaga
    10441 aattacttat aaagatgata ttttaaataa agaaaccaca aaaggagcac aatttgccca
    10501 acctttattt gaattccatg gggcatgtcc tggatgtggg gaaactcctt atattacttt
    10561 aattacaaga ttgttcggtg aaagaatgat tgtggctaat gcgacaggtt gtagttctat
    10621 ttatgggggt tcagctccat caactcctta tagaaaaagt gtgaaaaatg gacacggtcc
    10681 tgcttgggga aattcacttt ttgaagacaa tgctgagttt ggtttgggta tgaaaattgc
    10741 aactgaaaac acaagacacc gcattgaaca tatcatgaat gaaagtatgc aagaagttcc
    10801 aaatgcttta tcagcccttt ttaaagattg gattgcaaat aaagacaatg gtgctatgtc
    10861 tgtggaaatt aaagataaaa tgatccctat tttagagcaa aataaaaata ttaaagccgt
    10921 acaagatata ttagagctta aacagtattt aagtaaaaaa tctcactgga tttttggtgg
    10981 tgatggttgg gcttatgata taggctatgg cggacttgat catgttttag caagtggaga
    11041 aaatgtaaat attttagtgc ttgatacaga agtttattct aatacaggcg gtcaaagttc
    11101 aaaatcttct agaacaggag ctgtagcaca gtttgcagca gcaggcaaac ctatacagaa
    11161 aaaagatcta ggtcaaattg ctatgactta tggttatatt tttgtagcac aagtaaattc
    11221 aacggcaaat tatactcatc ttatcaaagc tatcactgca gctgaggcct atgatggacc
    11281 atctttggtg atttgttatt ctccttgtat agctcatggt attaaaggtg ggcttggtta
    11341 ttcaggagag caaggtgagc ttgctacaaa atgtggttat tggccacttt atacctttga
    11401 tcctcgttta gaagagcaag gaaaaaatcc tttaactcta acaggaaaag aacctgattg
    11461 ggatttatat gagcaatttt tgatgaatga agtgcgttat aattcactta aaaaagcaaa
    11521 tcctgaacac gctgctgagc tttttgaacg caataaaaaa gacgctcaac gtcgctatag
    11581 acagcttaag cgtatcgcta tggctgatta tagcaatgag gttgaaagct gataaaatat
    11641 atttttagtg ctacattgtg ttttagcact ttgtttgcac aagataattt tgaagagtac
    11701 tttaaactta tagataaaga aaatcgcata aattttaata ctcttcaaaa cccatttgtg
    11761 aatcctactt ttgaaaaatt aagacatatt aaaattactg caattatgct tgataaagta
    11821 aaaatttatg atcgatggta taaaaaaggt gatatgattg atgatgctat aatacatgaa
    11881 ataaatacta aagagattaa attccaatat gataatttag aaattgcaat ccaaataaat
    11941 aaaaatgata agattaatat taattaacat tcttttttgc cattatcttt atgctttaga
    12001 ttgtcaaaag cgtctttttg atatcagtat taatgaaaaa ttaagcatac aagaaagtct
    12061 tgatgagctt gcaaaatatt gttcttttag tattattgtt aaagataaaa ttgccaaaga
    12121 aaaattagaa acattgcaaa actctgtcaa tattcatcaa atgagtttag acgaaatttt
    12181 taattttttt atcaaagagc atgatcttag ctatgatttt gatggtaaaa ttttaagaat
    12241 ttcaggcatt aatacgaaga tttttaagat aagttatatc acttctatca gagaaggaca
    12301 aagcataact aaagcgtctg tagacgctaa accaaggcaa agtgaatata gcggtagttt
    12361 tgatgacgca gaagacaata tgattaaaag tatggaaaaa tttgattttt ggcaaaatat
    12421 agaaaaagag attattgtat tattaaaaaa ttctcatgaa gattatgagg ctaaaactcc
    12481 cattataaat cccaatgcag gtcttattat agtaactgga acaaattctc agttaaaaag
    12541 tgtgaaaaat tatttgcaaa aactagaaaa tcgtcttaaa aaacaagtta ttatcgatgt
    12601 tagcatactt gctgtgagtt taaatgaaag tcattctagt gggattaatt ggcaaaattt
    12661 taatataggt ttaaattcgc aagtaaataa tgaaaattct tttattcagt ttcaaaatgg
    12721 gcaaggtttt gttaagaatt tgggtttaag ggcgaattta aattttgatt ctattattaa
    12781 cttcctttct caaaatggaa aaactagcgt gctttctaat ccaaagctta tggctttaaa
    12841 taaccaacaa gccattattt ctgtaggcga tactataaat tatcaagtta aagaaagttc
    12901 taaaggcact gaaaatggga ctactgttag tgaaagttat aataattatt ctatttttgt
    12961 aggcatttta ctcaatatct tgcctgaaat ttctgatgat ggaaaaataa tgcttaggat
    13021 taatccaagc ttaagtgatt ttaagtatcc agaagataat aaacgacaaa aagaaccaag
    13081 aactattgct cctgatacca tacaaaaaaa gctttctagt gttgtgcaag tagagaataa
    13141 tcaaacttta attttaggcg gattgatttc tcacgataaa tctaatgaga aaaattctat
    13201 caattttcta tcaaaaattc caatcctagg ttctttgttt aaaggagaag ttttaaattc
    13261 taaagtaacc gaaattgttt ttattatcac tccaagtata gtagatagtg taaacgctcc
    13321 aagtcttaaa gatctaggat ttaagcatta tgagtaaaat tattccattt agagaagaaa
    13381 tttttcatca aatcaatcaa attttagaaa gccaaaaagc ttttattttt ttatggggaa
    13441 aaagtggtag tggtaaaagt gtattgttgc aaagattggc aaaaaaatat aatgttgatt
    13501 ttattaatga aaattttaaa gatcagagtt tcttaaaaga aaaaattgag tttttgattt
    13561 cacaaggtca gagtttaatc attcttgatg aagtaggaat gtatgattat gcaatgctag
    13621 aaagcattag gatttatagt gattctataa gttttgtttt aagttctcat aaaaagttaa
    13681 atatacttaa aaaagagcat tttaaaagtc gtttaagtgc ttgttttgaa ttgaaaaata
    13741 ttagtctttt agagcttgat gattatatta aattgaaatt cggaatgaat ttttcaaata
    13801 aatgtcttaa gtttttacaa aaaatttctc aaggaaattt aagatatatt gataaaactt
    13861 taaaaagttt ttatgagata aatagttttt ttgataaaaa taaaagtcaa gagtatattt
    13921 taaagcttag tgctttagag aatggcttat taaggtaaga tatgcaagaa agaattaaag
    13981 agcttgagct taggtataaa tactttttac ttaaaaaata tttaaaatat ttattgttag
    14041 ttattttaat atcagttata gcattttgtt tttttgtgct aatgcaaaaa tataataagc
    14101 aaaaaaatat ttatttgcaa gctattgaac ataaaaagca tttagagcaa aagattcttc
    14161 aagcgcaaat tttacaagaa aaaaataaga tttctaggga aaagttatat aaagaactag
    14221 aagaagttaa agcggtgcag gaaaatacac acattagtaa gatagaaatt gattctaaaa
    14281 ttttaaatat ttctgattta aaaaaatctt tttatcaaaa tccaagctat gaaaaggctt
    14341 taaatttagc taagaagtat tttgatatta aagcttatca aaagacaata ttttggactt
    14401 taaaagccaa tgaacttgac aagcaaaaac aagattcttg gctgattttt gctcaggcta
    14461 aaagagcttt aggtgaagaa aaagaagctc aaagtgcttt agatgcttat ataaattatt
    14521 atggtttaat ggaattagat ggaaagtaga atggataaaa tttttcaagc ttatattgat
    14581 aatgaaataa gtcttgatga aatttgcact aaatttaata tcacttcttg ggattttttt
    14641 aaaaaattag caaatttttg taatttacat tttgttgatt tagatgaaga taatgatttt
    14701 atttatgaag gtataccttt ttctttactt ttaaaattta aatttctgct tattaaaaac
    14761 aatgacggct ttatgattat tagatccaaa ccttgttctt tagagctttt agagcaagtt
    14821 aagactttta tgatttgtga aaaaatcgac actgcaattg ccgatgaatt aaagatagct
    14881 aaaattttaa atcaaattcg cattcaagag gagattaaaa gattaagcat taagcttaga
    14941 cttgaatggc aagaaaatca caaaagagat gatcaaagtt gcatcagtca aatttttgat
    15001 tttttattac atgaaatttt atcttttcat gcgagtgata ttcatataga agcaaggaat
    15061 gatgatgctt tgattaggtt tagggttgat ggaattttgc gtgaatttgc tatttttgag
    15121 aaggatattt atgaagcttt ggtttttcat gtcaaatttt tagcttgttt gaatttagct
    15181 gaatcaagaa aaacgcaaga tggaagtttt gaattagatt ttgaaaatga aagatatgat
    15241 tttcgtgttt catgtttgcc tttgatttat ggcgaaagtg ttgttataag aattttaaaa
    15301 catgataaag aaattttgga tttgcataaa ctaaatcttg gagataaaaa tttagaaatt
    15361 ttaaaaaaga ttttacatcg tcccaatgga atgattttat taaccggtcc tacaggtagt
    15421 ggtaaaagca caactttata cgcgtgttta aatgaattga aaagtattga aaaaaagatt
    15481 atctccgcag aagatcctat agaatataaa attcctttag tgcagcaaat tttgcttaat
    15541 tcaaaagttg gagtcgagtt taatagtgtt ttaagagcaa ttttaaggca agatcctgat
    15601 attatcatga taggagaaat tcgcgatgaa gaaagtttag atattgcact taaagcttct
    15661 ttaacaggtc atttgctttt aagcaccttg catactaatg atgctcttag taccattgat
    15721 aggcttttgg atatgcaagc aaaaagttac ttgatagcat cggctttgag tcttgttata
    15781 gcacagcgtt tggttagaaa actttgtcct tggtgtaagc aaaaaagcaa aaaacattat
    15841 attgaatttg aaggtgaatt ttttgaacca aaaggatgtg agcgttgtca tcatagtgga
    15901 ttttttggca gagaattaat cgctgaatgc ttagagatca atgaagattt agcttgtgca
    15961 attagggaaa atcaagataa aacgatttta atggagcttg caaaaaaata tggctttcaa
    16021 actatgtttg aacaaggttt aaaaaaagcc aaagaaggtc ttacaagtat agatgagctt
    16081 ttaagggttg taagatgaaa ttttatgaag tagaatttct taaaaacaat caaaattata
    16141 caaaaactat aaaagctgaa aatttaaata cagcacaagc aaaagcctta tcaaagaatt
    16201 ggaaaatcat tgatataaaa gaaattcaaa aatctaattt tcagagatta aaggatgaaa
    16261 attttatact cttttttaaa gagctagctt tgttgtgtga agttggatta agtgttcaag
    16321 aagcgattag agaattatat tttatgtatt cttgcaagat tatgaaaaaa atattagaca
    16381 atttaatttt agctcaaaat ctaaatcaag cttttgaaaa tgctaatttt ggattaaatc
    16441 gtgcggagtt agctttgatt aaaacggctg aaaagacagg aaaaatcagt gaagtgttta
    16501 gtcaaatttc taaacttcga gaaaaaagct tagagagtca aaaacaatta aaaaaggctt
    16561 ttagatatcc tactttggtt tttttaagta ttatcggagc atttttgttt ttaatgcttt
    16621 ttgtagtgcc taattttaaa gatttatttg aaaatttagg cgcgagtttg ccttttatca
    16681 cgcatgtaat gttagaaatt tataattttt tagatgacta tggaattttt tgcatatttt
    16741 tgtttgttat ttttattgtt atgcttattt tagcttataa aaattttcat tcttttgctt
    16801 tttcttg
//
LOCUS       DAEDTT010000023        16768 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.023, whole genome shotgun sequence.
ACCESSION   DAEDTT010000023 DAEDTT010000000
VERSION     DAEDTT010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16768)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16768)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16768
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.023"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..491)
                     /gene="yaaA"
                     /locus_tag="KLC54_000591"
     CDS             complement(<1..491)
                     /gene="yaaA"
                     /locus_tag="KLC54_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HBD9176990.1"
                     /translation="MKILFSPSESKNENCVKNPINENSFIFKELFPYRMEALKHYEEF
                     IKNASLQNLQELFGIKNENEIDKFKHDLKQAPTQEAILLYTGVSYEYLNFKALDKKSQ
                     AYILENTLIFSNLFGVVRANDTLPFYKFKQGAKIGNFAIEKFYKEHFSKALDEYLENE
                     EIL"
     gene            complement(582..1700)
                     /locus_tag="KLC54_000592"
     CDS             complement(582..1700)
                     /locus_tag="KLC54_000592"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176991.1"
                     /translation="MKKGIFLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIAS
                     LSQDSGIKIEFSDFKCNADGDFIACLSSNFKTLAKDNKDEYQELFQAKNIKIRSNEIY
                     KGEANASISIKEYYNDLFKNQKSIQSNLVFENFKLGEKVVSDINASLFQQDPKISSFI
                     NKLSSDSYTLSFDNSINKQENNYLDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKG
                     IKFNTQTLAMDEQAINELLNMANYEQASDFSNTIQKYIILNNFKIDSTLKTEGVFSSY
                     IATAKENLQTLKAQSQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYST
                     QGIDSIEKLSINNQDATEALKIILPFIMFSMLMGGASF"
     gene            1919..2758
                     /locus_tag="KLC54_000593"
     CDS             1919..2758
                     /locus_tag="KLC54_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HBD9176992.1"
                     /translation="MKKILLSVLTAFVVVVLAACGGNSDSKTLNSLDKIKQNGVIRIG
                     VFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCLPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPDIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMAIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            2799..4046
                     /locus_tag="KLC54_000594"
     CDS             2799..4046
                     /locus_tag="KLC54_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD9176993.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFVKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYRICSIFSIAFIIFGMLFSFYDEKFLFYFLLACFTQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFVVNAFYKEYLGIYLAIVGSCS
                     LFCVFLLKRVFARSKIKELSIVF"
     gene            complement(4029..5297)
                     /locus_tag="KLC54_000595"
     CDS             complement(4029..5297)
                     /locus_tag="KLC54_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HBD9176994.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKA
                     GNIRAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFKNLECLFTNDEEVGLMGVNSLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLPFNTLRKKGKIYELYAQNFKGGHSGINIVRNEKSSIKEMAKFIQENKGEIISFEGG
                     ERINSIPKHAKALVHFKNEVKSNNWIKCDFKEEGEFEICDQSNKLLSLINSFTHGVRA
                     YDENLGIVQTSINLATLRMQDKQIKFALFARSNILDGLKQVEFETLEFFKAFDFKVRS
                     FNFYPPWEGKPNALSDMVFKALKKISPNAKVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
     gene            5365..5892
                     /locus_tag="KLC54_000596"
     CDS             5365..5892
                     /locus_tag="KLC54_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HBD9176995.1"
                     /translation="MRINYKKLFNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSF
                     EGKVVRIIDGDTIEVNHENKLTRIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEII
                     YKNKDTYGRIVAIVKLNNVDINRFLVSKGYAWADTYYSNAYIKEQENAKKNHLGLWKE
                     GNPIEPYKWRKHNKF"
     gene            5901..6074
                     /locus_tag="KLC54_000597"
     CDS             5901..6074
                     /locus_tag="KLC54_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176996.1"
                     /translation="MKKYTLMILLVLGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     VCPKNWVDIKMTP"
     gene            complement(6075..6653)
                     /locus_tag="KLC54_000598"
     CDS             complement(6075..6653)
                     /locus_tag="KLC54_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9176997.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLTGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEIKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(6725..7615)
                     /gene="cmoB"
                     /locus_tag="KLC54_000599"
     CDS             complement(6725..7615)
                     /gene="cmoB"
                     /locus_tag="KLC54_000599"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HBD9176998.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYTKIQELKALNLACNFSLDDSVNL
                     STNSQAKDEILAITKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIEYELLGVEDLPRY
                     GLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYVRIGI"
     gene            complement(7689..8300)
                     /locus_tag="KLC54_000600"
     CDS             complement(7689..8300)
                     /locus_tag="KLC54_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family protein"
                     /protein_id="HBD9176999.1"
                     /translation="MDKLITWNEKYSIHDTMIDIQHQKLFELAGKVESAVYKFVKREE
                     LKEILTELFNYMKEHFDNEEQYMQEIHYPYLNEHKIMHKNIIRDMSYLIQNIKTTNDL
                     KEKLYLAVKKWLLEHILYEDMKVEQYRRSSLASEDDKEVSFEEEGDEELENAVYLYIC
                     KCSGAIHDVPFGIHEKIKLQGKKFKCKKCREALEFYKVYSEGF"
     gene            complement(8355..10085)
                     /locus_tag="KLC54_000601"
     CDS             complement(8355..10085)
                     /locus_tag="KLC54_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HBD9177000.1"
                     /translation="MLEQSPYKEDANLKNYNNTLKVKDGVIIIDHSNTSDDNNSKTIN
                     TKKNTQKDNNNTQKNQPNLSNDNTLKTKTPNSNTPSLKNTSKEESIHKVSFSFHITNK
                     NINFKDLGLDEQVLQEALNDYKKESISVQDLQDIANIISYYVQVSGYPAATAYIPQQE
                     LKDQIQINITLGVLGKYVVQNNSSVRDYAIESKLPNHKGEIITTKLVEDAVYKVNEMY
                     GIQTLASLKAGDNPGETDVVIETTPSDSFVSVLFYGDNYGIKESGRYRGGASMSFNNI
                     AHQGDSLNAYLQRSDEAQTNYGISYTTFLGNLKITPSYSKGNYALGGIWREFDFIGTS
                     ENLGIDLKYPLWITTYNSFYLTSSYYHKKLSDSKFDILTFDKSSDTISFGIEGVYNGI
                     SNDSFSYSANVSYGNVKDEGMTIVGIGTSKVGGVEFGKFAKLNVNLNNAYFFNDTFTH
                     LFSLNYQQVINGATLDSSETISLRGPYGVRAYNNGDGEGDNAVVASFGLRMATPLKDF
                     YITPFYDIGYSWYENDSYTNYMDAYGLQLLYNKTGNFYVKLDLARALKKYKLDDDYSS
                     KAYVSFGKYF"
     gene            complement(10409..12112)
                     /locus_tag="KLC54_000602"
     CDS             complement(10409..12112)
                     /locus_tag="KLC54_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HBD9177001.1"
                     /translation="MKKLNKLSLSLVVGSLLFTQSYALPSGGKFTHGTSGSISVSGGT
                     MNISGSKTNSVIQWGGGFNIANGETVNFKGNGYNYLNIVYGSKSSHIDGTLEGGTNNI
                     FLINPNGIVVGKDGSINANRVFLSASSIGDKEMKEFAKDGKISAFEGNPLTTASPVIK
                     SNAGNVINLGTITAGERVVMVGNQVSNMKYGSTDYGKFIFTNKKEQSNTVYLDVYSND
                     IFVIRGPASNTIKKEDSVMLSIRPNKGSTGPGGDPTDTIGYKETSDLVAKDNISNEVL
                     NSIFNDLKFNSSVDISDLSKFYKDGKILTADELTSINQSMDFITALYGQTQDSNNATF
                     ANALKEVLGNSYGNLGKANQAIIKTKEILSQIPKITEQQKNIQKAYDQAVDAYNEAVK
                     KYNAALSGVTGSNASETITALKTVLDKAYNDLKNAEANLESTTASNNSSLKSSNETLA
                     SVSIDGYKLTVNGEYLADYKTVNKPNDNNSGSNNGNDGTDSGDINNGNNNGSNNNPND
                     TIGQQEPDIATALLMQTTDEDPNINEDDKQASIDEASTQESGNACIVSDNFKAGNPCS
                     R"
     gene            complement(12209..14472)
                     /locus_tag="KLC54_000603"
                     /pseudo
     CDS             complement(12209..14472)
                     /locus_tag="KLC54_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002933025.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            15123..15497
                     /locus_tag="KLC54_000604"
     CDS             15123..15497
                     /locus_tag="KLC54_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HBD9177002.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERARSEIFFNKKVDIFDAS
                     KGHFLLAKANCNFLKPAKLGDMIEIKTKILEVKNASVEILQEIYKDEILLFKMELTLA
                     FIKNEKPARMDMQLKKLFEELF"
     gene            complement(15489..16679)
                     /locus_tag="KLC54_000605"
     CDS             complement(15489..16679)
                     /locus_tag="KLC54_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177003.1"
                     /translation="MKKIFLIFFLSCFLLNAKEQKLVDVKPVENFYPKLSVQECNTNC
                     LFDLLESRLYLSFLSEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEK
                     TIKSYSNTIINSSIAYLLRQRAEIKVKVFLTGTEDSDKIRAALDAAQAQGYQYAIAGF
                     TLKGANELKNYSGNMKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAI
                     FSDGSALSSNLNSRILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNTPLIKT
                     ALASSQLRIYNIHPYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNE
                     IFNQSIDYNWIAYATSIGVDYFYTEFLNKKSESLFDEKIKNSQVDYKVRLMQGKQASF
                     EELK"
BASE COUNT         5329 a         2413 c         2502 g         6524 t
ORIGIN      
        1 tcaagtattt cctcattttc taagtattca tctaaggctt tactaaaatg ttctttataa
       61 aatttctcta tggcaaaatt tcctatttta gccccttgct tgaatttata aaagggtagg
      121 gtatcattag ctcttacaac gccaaaaaga ttagaaaata taagagtatt ttctaaaata
      181 taagcttggc tttttttatc taaggcttta aaattaagat attcataact taccccagta
      241 taaagcaata tagcttcttg ggtgggagct tgttttaagt cgtgtttaaa tttatcaatt
      301 tcattttcgt ttttaatgcc aaaaagttct tgtaaattct gtaaacttgc atttttgata
      361 aattcttcat aatgctttaa agcttccatt ctataaggaa ataattcttt aaatataaat
      421 gagttttcat tgataggatt ttttacgcaa ttttcatttt tgctttcact aggggagaat
      481 aaaattttca ttttagcctt ttttgttaat gttatgaaac attaagagca aagaatttaa
      541 tcttgctttt aatgtttttg aagtttttat cattttaaaa tttaaaatga cgctccgccc
      601 attaacatgg aaaacatgat aaatgggagt ataattttta acgcttctgt ggcgtcttga
      661 ttgttgatgc ttagtttttc tatgctgtcg attccttgtg tgctatagtc actaacaggg
      721 atgtttttaa attttaaatc aaggttgagt ttataatcat cattttgagt gatattgttt
      781 aaaatagcta aagctttatc aaagattaat gcttgttctt cattttgact ttgagctttt
      841 aaggtttgta gattttcctt agcagttgct atatagctac taaatacgcc ttcagtttta
      901 agagttgaat caattttaaa attatttaag atgatgtatt tttggattgt attgctaaaa
      961 tctgaagctt gttcgtagtt tgccatatta agaagttcat tgatagcttg ttcatccata
     1021 gctaaagttt gagtgttaaa ttttataccc ttagaatcaa ggtaattaag taaatcttct
     1081 tttagattta tatttagatt tgtattgaaa tttaattttg cgttataaaa ttttatatca
     1141 agattatcta gataattgtt ttcttgtttg ttgatagagt tatcaaatga taaagtataa
     1201 gaatccgagc ttaatttatt gataaaagag ctgatttttg gatcttgttg aaataagctt
     1261 gcattgatgt cgctaacaac tttttctcca agtttaaaat tttcaaaaac caaatttgat
     1321 tgtatgcttt tttggttttt aaaaagatcg ttgtaatatt ctttaatgct aattgatgca
     1381 tttgcttcgc ctttgtaaat ttcatttgag cgaattttga tattttttgc ttgaaatagc
     1441 tcttgatact catctttatt atcttttgca agagttttga aatttgaact taaacacgct
     1501 ataaaatcac catctgcatt gcatttaaaa tctgagaatt caatctttat tccagagtcc
     1561 tgagaaaggc ttgcaatttc ttgtttaact gtttgattta gttgattttc atatttttta
     1621 actgtttttt catctatgga atttccgcaa gctgaaaaca aaacagctat tccaatagag
     1681 agaaaaatac cttttttcat agttttctcc ttaaaaattt taaaaaaaag attatatctt
     1741 tttttactta aaatttaaac aatgctaaaa gagagtgtga gattaattac atttttacac
     1801 ataggaaaat ctttttagtt tgtttcaaat gcattattta taattttaag tataattaac
     1861 tttgcaatta ttatatattt tgcaatagct ttaagcttat tttaaagaaa ggaaatgtat
     1921 gaaaaaaata cttctaagtg ttttaacggc ctttgttgta gtagtattgg ctgcttgtgg
     1981 aggaaattct gactctaaaa ctttaaattc tcttgataag atcaagcaaa atggagttat
     2041 taggattggg gtatttggcg ataaaccacc ttttggttat gtggatgaaa aaggaaacaa
     2101 tcaaggctat gatatagctt tagctaaacg catagcaaaa gaactttttg gcgatgaaaa
     2161 taaggtgcaa tttgttcttg ttgaagctgc aaatagggtt gagtttttaa aatcaaataa
     2221 agtagatatt attttggcta attttactca aactccgcaa agagccgagc aggttgattt
     2281 ttgcttgcct tatatgaagg tagctttagg cgtagctgta ccaaaggata gtaatataac
     2341 tagcgtagaa gatttaaaag ataaaacctt gcttttaaac aaaggcacaa cagcagatgc
     2401 gtattttacg caaaattatc ctgatattaa aactttaaaa tacgatcaaa ataccgaaac
     2461 ttttgccgct ttgatggata aaagaggcga tgctttaagt catgataata ccttgctttt
     2521 tgcttgggtg aaagatcatc ctgattttaa aatggctatc aaagagttag gcaacaaaga
     2581 tgttatcgca ccagcagtta aaaaaggcga taaagaactt aaagaattta tcgataattt
     2641 gatcattaaa ctaggccaag agcagttttt tcacaaggct tatgatgaaa ctttaaaagc
     2701 tcattttgga gatgatgtta aggctgatga tgtagtgatt gaaggtggaa aaatttaaca
     2761 aagggctttt tgccctttat attgatttag gataaaatat gcaaaaaaaa tacaaaaata
     2821 ttatttatgc ttctttgggt ggaattttgg aattttatga ttttgtgctt tttgcctttt
     2881 ttttggatat ttttgctaag gtattctttc cgcaaaatga tgctttttgg atgcagataa
     2941 atgcttatat agcctttggt gctgcttatt tagcgcgtcc ttttggttct attgtgatgg
     3001 cacattttgc tgatagatat ggaagaaaga atatttttta tatttctatg cttttgatgg
     3061 ttttgcctag ttttgcttta gcttttttgc caagttatga aagtataggt atatttgcta
     3121 ctttgatttt atttactatt cgtattttgc aaggtttagc cgttggaact gaggtgagcg
     3181 gagcttggat ttatgtgagc gaatttgtca aagggcgtca aattccttta gctcttggtt
     3241 ttatttcagc gactttaacc ataggtttat tgctaggaaa tattgccact ttaggcataa
     3301 gatcttattt taccccagaa gaagttcaaa gctatgcttg gagaattcct tttatcatag
     3361 gaggattttt tggaatttta gctttgtttt taagaaataa actcagcgaa actccagaat
     3421 ttgtaaaagt tcaaaatgaa aagaaaattt taagttttcc attgtttgaa gctttaaaaa
     3481 ctcataaaat gagcatgctt gtttgttttt taatgaccat ggttttaaca agcggtgtgg
     3541 caactttgat gattttgcct aagtattttg aaagtctttt agctatgagt aaaacttctg
     3601 ctttatgggt acaaaatttt gctattttag cggtgatttt tggagcttta tttcaaggtt
     3661 ttttagcaag caaatgggga agctatagga tttgttctat ttttagtata gcttttatta
     3721 tctttggtat gctttttagt ttttatgatg agaaattttt attttatttt ttactggctt
     3781 gttttacaca aggtattatc actttcgcac ctgtttttat gacacaaatt tttaaaagcg
     3841 aacttaaatt tagtgggctt agttttgctt ataatatttc ttatgcgatt ttaggttttt
     3901 taaccccttt tgtagttaat gctttttata aagagtattt aggtatttat cttgctatag
     3961 tgggatcttg ctccttattt tgcgtgtttt tgttaaaacg cgtttttgca agaagcaaga
     4021 ttaaagaatt aagcattgtc ttttaaaact tcaaaaacaa ccttagatat tttttcaact
     4081 gaagcgattt cgcaatgctc atcagttgaa tgaggattat ggatatttgg acctatagaa
     4141 gcgcataaaa gctcttgttt tttctctata atgccacact caagccctgc atggatagct
     4201 gaaactttgg cattaggcga tattttttta agcgctttaa aaaccatgtc gctaagtgcg
     4261 tttggtttgc cttcccaagg tggatagaaa ttaaaacttc ttactttaaa atcaaaagcc
     4321 ttgaaaaatt ctaaagtttc aaattctact tgcttaagtc catcaagtat attagatctt
     4381 gcaaaaagtg cgaatttgat ttgtttatct tgcattctta aagtagctag gttaatgctt
     4441 gtttgaacta tacctagatt ttcatcataa gctctaactc catgagtaaa agaatttata
     4501 aggcttaaaa gtttgttact ttgatcgcaa atttcaaatt caccttcttc tttaaaatcg
     4561 cattttatcc agttattgct ctttacttca tttttaaaat gcactaaagc tttggcgtgt
     4621 ttaggtatag aattgattct ttctccacct tcaaaagaaa tgatttctcc tttattttct
     4681 tgtatgaatt tagccatttc tttgatggag cttttttcgt tgcgtacgat atttatgcct
     4741 gagtgtccac ctttaaaatt ttgcgcgtaa agctcataaa ttttaccctt ttttctaagg
     4801 gtattaaaag gcaagctagc ttctatatct actccacctg cacagcctat catgatctca
     4861 tcatcgcttt catgatctaa atttaaaagc attttagatt ctaaagtgtg ctcgagtgaa
     4921 ttcactccca tgagtcctac ttcttcatcg tttgtaaaaa gacactctaa atttttaaat
     4981 tcagccatag cactcatcat gatggctata cctataccat tatccgcgcc aagacttgaa
     5041 tttttggctc ttaaaaagcc attttcttca taaacttcta agtttggtgc atcgcccata
     5101 cagaccatat cataatggct ttgtaagcaa atttttggtt tgccttttat ggcacggata
     5161 tttcctgctt tatctacact cactttaaag cctttatctt tagcataaga gcttaaaaat
     5221 tctttcattt gttctgtttc ataactgcaa tgaggaattt tacataattg tttaaaattt
     5281 tctataacat tttgcatttt atctcctttg ttttgataaa attatggcat attttttaaa
     5341 atttaaaggc aaaatgatta aaaaatgaga ataaattata aaaaattatt taatttaaga
     5401 aaattactaa gtgatccaaa aaaacttttt tctgtattaa tttttactct tgtagttgtt
     5461 tttatccaga attatattgc ccaaaattct agttttgaag gaaaagtagt tagaattatt
     5521 gatggagata ctatagaagt taatcatgaa aacaaactca ctagaataag attttttggt
     5581 atagatgcac cagaacttaa acaaagtttt ggaaagcaat caaaagaagc tttaagtaga
     5641 attttaagcg gtaaacaagt tgaaattatt tataaaaata aagatactta tggtagaatt
     5701 gttgctattg taaagcttaa taatgttgat attaatcgat ttttagtaag caaaggctat
     5761 gcttgggctg atacttacta tagtaacgct tatattaaag aacaagaaaa tgctaagaaa
     5821 aatcatttag gtctttggaa agagggtaat cctatagagc cctataaatg gagaaaacac
     5881 aataaattct aaggaaaaac atgaaaaaat atactttaat gatactatta gttttaggaa
     5941 tttctggatg ttttgtaaat gaaagaggaa tttcaaatcg tttttatgat gattgtaaag
     6001 aatattatga tggaagtgga acttatcata aggtttgccc aaagaattgg gtggatatta
     6061 aaatgactcc ttgattattt tccacccaca gaggccatta atgcagctgc tacggcttct
     6121 ggattgttga ttttggcacc ttgttcttga ttttctgtag gtttaacagt attaagtggc
     6181 ggacgcttga gtttaaatat atgctcatca gtgctaacaa cttgtatcgt tccttcaaac
     6241 attttaattt ctttaacatg cccgaccact tttacatctc tttttttgga ggtttcgtca
     6301 aaaagtgcat gagcttcaag ttctaaaaca tcgcctaatt taagcggagc ataaaaaaaa
     6361 cattttgatc caataatcac tgaaaattct ttattgatag aggcttgtgc tacatagttt
     6421 gccgcagcga aaataaaggc atcaaaaatc aatccttgat catctgctac catttcgctt
     6481 gtggttatta aaattgattt ggcatagttt ttatcaattt ctataatggt tccagtaagc
     6541 gaagtgttta attcaggaca agtgagtaat tctgctctaa cacgagatat atcttctgca
     6601 gatgcgtatt cttcaagttg tgcatattct tcaaaattat ctttttttgc catatctaac
     6661 ctttaaattc tacttatcta cttcaaaata tctaaagcct agatcgacaa aaagcaaaaa
     6721 gaatttatat cccaatacgc acataaactc ttttgggtgc ttcatagcct tcaatggtaa
     6781 gatttttatc ctttggatct aagaaatttt ccagcgaaaa agagtctatc cattctgttt
     6841 ttctttgttc gttttcatcg gttttttttg tagccaaaac ttcaaattct ttaaatcctg
     6901 ctctttcaca ccagtttttt aatgcactaa tgcttggtac aaaataaata tttggaattt
     6961 tagaataagt tttattaggc acaagagcga tttctctctc atcttctata tacatggtat
     7021 ctaaaaaaac aactccattt ttattaagtc ctgcttttaa atcttttagc atttttatag
     7081 gatcacttct atgataaatc accccaagac agaaaatcac atcaaatttc aagccatatc
     7141 ttggaagatc ttctacgcct aaaagttcat attctatagg agttttagct aaagcgttaa
     7201 tgagttcaaa ttgcaaacgg tatttgatag aaggatcaaa acctatgagt tttgcaggat
     7261 taaattcaag cattttaaac atataataac cattattaca gcctatatca gcaacgcatt
     7321 tttgagaaat ttcgttcata aaaggcttta aaatattaaa tttaataaaa ctttgccatt
     7381 ctgtatcgat gaaaagatcg tctattttaa aaggaccttt tctccatggt ttaagttctt
     7441 ttgttatagc taggatttca tctttggctt gagaatttgt agataaattt acactatcat
     7501 ctaaagaaaa attacaagca agattgagag ctttaagttc ttgaatttta gtgtataaag
     7561 ggtgatttag aaattgtttt tcgagtaaat tttcttgcat ttttatcctt gacatttgct
     7621 tttaatgcta aattataaca ttaaaagctt ttagaattag caagtataag ctaagattat
     7681 ttttaaaatc aaaacccttc cgaataaacc ttataaaatt ctaaagcttc tctacatttt
     7741 ttacatttga atttcttacc ttgtaatttg attttttcat gaattccaaa aggcacatca
     7801 tggatagcac ctgagcactt gcaaatataa agataaacag cattttcaag ttcttcatcg
     7861 ccttcttctt caaagcttac ctctttatca tcttcagaag ctaaagaaga tcttctatat
     7921 tgttcaactt tcatatcttc ataaagtata tgttctaaaa gccatttttt aacagctaaa
     7981 taaagttttt cttttaaatc attagtagtt tttatgtttt gtataagata agacatatcg
     8041 cgaatgatat ttttatgcat gattttgtgt tcatttaaat aaggataatg aatttcttgc
     8101 atgtattgtt cttcattgtc aaaatgttct ttcatgtagt taaaaagttc tgttaaaatt
     8161 tctttgagtt cttctcgttt tacaaattta taaacagcac tttcaacctt gcctgcaagt
     8221 tcaaaaagtt tttggtgttg aatgtcaatc attgtatcat gaatactgta tttttcattc
     8281 caagtgatta gtttgtccaa aatttctcct atccacccct tacaccctta gcaagaaaaa
     8341 cttcttgcta aaactcaaaa atacttccca aagcttacat aagctttaga actataatca
     8401 tcatctagtt tatatttctt taaagctcta gctaaatcaa gcttaacata aaaattccct
     8461 gttttattat aaagtagttg taaaccataa gcatccatat agtttgtata agaatcattc
     8521 tcataccaag aataacctat atcataaaaa ggagtgatat aaaaatcttt taaaggagta
     8581 gccattctaa gtccaaagct agccactaca gcattatctc cttctccatc tccattatta
     8641 taagccctta ctccataagg acctcttaaa gatatggttt cactactatc taatgtagct
     8701 ccattgataa cttgttgata atttaagcta aaaagatgag taaaggtgtc attaaagaaa
     8761 taagcattgt taagattgac attaagttta gcaaattttc caaattctac tccacctact
     8821 ttgcttgttc ctatacctac tatagtcata ccttcatctt taacattacc atagcttaca
     8881 ttagcactat aagaaaaact atcattgcta atgccattat aaactccttc tataccaaag
     8941 cttatcgtat cagagctttt atcaaaggtt aaaatatcaa atttagaatc actaagtttt
     9001 ttatgataat agcttgaagt taaataaaaa gaattataag tcgtaatcca caaaggatat
     9061 tttaaatcta tacctagatt ttcagaagtt cctataaagt caaattctct ccaaattccc
     9121 cctaaagcat agtttccttt agaataactt ggagtgattt ttaaattccc taagaaagta
     9181 gtatagctta taccatagtt agtttgtgct tcatcgcttc tttgcaaata agcattaaga
     9241 ctatctcctt gatgagctat gttattaaaa ctcatactag caccacccct atatctgcct
     9301 gattctttta taccgtaatt atccccataa aacaatacag aaacaaagct atcactaggg
     9361 gtagtttcta tcactacatc tgtttcacct ggattatctc ctgcttttaa agaagcaagg
     9421 gtttgtatgc catacatttc attgacttta taaaccgcat cttctactaa tttagtagtg
     9481 atgatttcac ctttgtgatt aggtaattta ctttctatag cataatctct tacactagaa
     9541 ttgttttgaa ccacatattt acctaaaaca cctaaggtga tattgatttg aatttgatct
     9601 tttagttctt gttgtgggat ataagctgta gcagcaggat agccactaac ttgaacataa
     9661 taagaaataa tattggctat atcttgtaag tcttgaactg aaatactttc ttttttgtaa
     9721 tcgtttaagg cttcttgtaa aacttgctca tctaaaccta gatctttaaa gtttatgttt
     9781 ttattggtaa tatgaaagct aaagctaact ttatgaattg attcttcttt agaagtattt
     9841 tttaaagaag gagtgtttga atttggggtt ttagttttta aagtattatc attagacaaa
     9901 ttaggttgat ttttttgagt gttgttatta tctttttgag tgtttttctt tgtgttgatg
     9961 gtttttgaat tattatcatc actagtatta gaatgatcta tgataatcac tccatctttt
    10021 acttttaaag tgttattgta gttttttaag ttagcatctt ctttataagg agattgttct
    10081 aacatttgta tggttttttt attatcttta gtatcactag cataaaggct taagatagct
    10141 aaactagata gtaagataat gcgtttcatt tgtgtttttc ctttttaatg atttcataag
    10201 agcttgtttt atagatttag tttttaatct tttttatttt ttgctttttc tgtttttatt
    10261 ttttctttct ttttatcttt ttatttttct ttattttttg tatttgtttg attgattatc
    10321 aatctttttt gatttttaat ctttaaattt tgtttgtttt attaattttt aacaagatcc
    10381 aaaaggcttt taaccttttg gattttaatc atcttgagca aggatttcct gctttaaaat
    10441 tatccgatac tatacaagca ttaccacttt cttgagtact ggcttcatct atacttgctt
    10501 gtttatcatc ttcattgata tttggatctt catctgtagt ttgcataagc aaagctgtag
    10561 caatgtcagg ttcttgttgt cctatggtat catttggatt gttattagaa ccgttgttat
    10621 taccattgtt aatatcacct gaatcggttc catcgtttcc gttgttggaa ccactattgt
    10681 tatcattagg cttgttaaca gttttataat ctgcaagata ttctccatta actgtgagtt
    10741 tataaccatc tatgcttaca cttgctaaag tttcattaga actttttaag ctagaattat
    10801 tacttgctgt agtgctttca aggttagctt cagcattttt taaatcatta tatgctttat
    10861 ctaaaacagt ttttaaagca gttatagttt cactagcatt gctacccgtt actccactta
    10921 aagcagcatt gtattttttc actgcttcat tgtaagcatc tacagcttga tcgtaagctt
    10981 tttgaatatt tttttgttgt tcggttattt taggaatttg agaaagaatt tcctttgttt
    11041 taataatggc ttgattagct tttcctagat taccataaga atttcccaat acttccttta
    11101 aagcgtttgc aaatgttgca ttattgctat cttgagtttg tccatataaa gcagtaataa
    11161 aatccatact ttgattaata cttgttaatt catcagctgt taatattttt ccatctttat
    11221 aaaatttact taagtcgcta atatcaacac tagaattaaa tttcaagtca ttaaatatag
    11281 aatttaaaac ttcatttgag atgttatctt tagcaacaag atcactagtt tctttataac
    11341 ctattgtgtc tgtcggatct cctcctggtc cagttgagcc tttattaggt cttatactca
    11401 acattacaga gtcttctttt tttattgtat ttgatgcagg accacgaatg acaaatatat
    11461 cattactata gacatcaaga tagacggtat tggattgttc ttttttattt gtaaaaatga
    11521 atttaccata atcagtgcta ccatatttca tatttgaaac ttgattgcct accataacaa
    11581 ctctttctcc tgctgttata gttcctaaat ttataacatt tcctgcattg gatttaatta
    11641 caggtgatgc tgttgtcaga ggatttcctt caaatgctga aatttttcca tcttttgcaa
    11701 actccttcat ctctttatcc cctatcgatg aagcagataa aaacactcta tttgcattaa
    11761 tacttccatc tttacccact actataccat taggattgat taaaaagata ttgtttgtac
    11821 caccttctag tgttccatct atatgagagc ttttagaacc atagacaata tttaagtagt
    11881 tatagccatt acctttaaaa tttacagttt caccatttgc tatattaaaa ccaccacccc
    11941 attggataac agagtttgtt ttacttcctg agatattcat agtgccacca ctaacactta
    12001 tacttccact tgttccatga gtgaacttac ccccacttgg taaagcatag ctttgtgtaa
    12061 aaagtaaaga acctacaact aaagacaaag aaagtttatt taactttttc atgacttgct
    12121 cctttttgta agattaagat ttaagaatct tttgtttata tttataaaaa tacaagcaaa
    12181 agattcctat ctttaagata ggaatgattt attttatctt tgcgtaaatg cttttaccat
    12241 cttgggatat tcttacttca taagaaagtt tttgtaaatt catctttttt aatctatcta
    12301 tagaacttag tttaaaatct tctttgtttt tttgcatttt ttcaataaag ctttgaagtt
    12361 cttcttgatt taaagtatta gaattttcat ctataaaacc ttgctcactt tgtaagatta
    12421 agatttcttt atttttaagg taggggtatt gctctttgag ggtgtaaaga gctaatactc
    12481 cctcgctaga aatattaata ggagcatcgt atgacttcaa aaggggggtt gtgttgattt
    12541 tattggatac aataagataa taatgctcaa agttattaat aattctagct tcaactttag
    12601 tatttaaatc agtctattgt ttttacttaa actgatatct gaaggagcta cagcattaga
    12661 agcactattg ctatcttcat aatgcactaa agcccctgct aatatatcta tgaaagtgtt
    12721 tttaaatata tttaaattcc cgcctatata taaggtatta ttataagatt tagcttcact
    12781 taaacctgta atggctgaag gagctataaa aatagaattg ttatttttat actcatcaag
    12841 attaagattg tttatgatta aggtattatc atgggcattg tttgaaagtc cagctataat
    12901 acttaaaatt ccttctcttt tatctgaagc tacaccaaat aaagtatcat tgataatgat
    12961 tttattataa gctgcttcat tgtaagccat aatcaaataa gcattatcag ctgcattaga
    13021 agaatagttt tttatatcta tggtattatg attggcttta tctaaagctc ttatgatgat
    13081 tttagaacct ttatctatat tacttgcatc ggtaatgctt tgaacattgt tgtaatttat
    13141 agtattataa gaggcttctt tagcttctgt taatacagtt agatttctaa aagaagcaaa
    13201 gtctttaatc actacttcat tgttattagc accactagga taaaagtctt gattattaag
    13261 aatgtttttc ttagctgtat aaatgtatac aggtaaggtt gacatagaat tattgatata
    13321 aactttatta taatccgcac tgccttctaa ggttctagca gctacaatat ttaaagcatc
    13381 tttatagctt tgagaaagat cggttgtggt aagatcgttt ttaatgttaa tggtattatg
    13441 attagctcct ttagttgcaa agccaccata aaaagaatgt tggttataac ctaagaagtt
    13501 attagcgatt tctaaaggat gttttaattc tatgtttaag gtattataat ttgcttctcc
    13561 attattagaa gctcctgcat agaagttaaa caaagcttga gcaaaaatgt tctcattgtt
    13621 tttatctttt tttaggtttt taatatcttt taaattgata gtattatcta aggcttgtcc
    13681 ttgttcggtt tttccacccc aaaaatcagc aaataaaaca gaattataag ctaggggttg
    13741 tttatcatgg ttcatataca tatcaagatt aaaaccatct atgtctaaaa ggtttttact
    13801 ggcttgaaag tttttatctg ttccactatc tatataacct gcgctaatat gagcagcagc
    13861 tgaactagca taagctttgc ttggaccatg gataatcata ttagcatctt tgataaagat
    13921 tttattgttt tttacattac cttgataagc taaaccacct acaaggtgag tgattctttc
    13981 atcaaaggta ttattaccat ttttatcttt tttaggtaag gaagtaaaaa actctacact
    14041 gctacctgct tctatattta aactattatt tgtagaatct ccataagtgg ctatagctcc
    14101 gattaaataa ggagcaccat ttaaggctaa atcataagtg ttctcaactc ccatactaat
    14161 atgagcatct ttttgaagta tggtttggtt atagcttgca ttaccataat gagtaaaggt
    14221 agaactcatt aagaaattca tgcgttgatt gcttttagaa ttactagggt tttttatatg
    14281 agtatcttta ggtttaagat aaaaaaccga actaagttct ccttgttcta atataagttt
    14341 attataactt gcatcagcat gatcggtttt tgctgtgatt aaaaaaggaa gcactctaac
    14401 tgtttttata ctatgatcgg ctgtattaac accatgcctt gctttaaaag aaagaacttc
    14461 atcttctctc atatcaggag taagtaaata atgtttaaaa tttaaatcgt ttatatttgt
    14521 aatatttggt ttaggattgt tataaattaa agtaatattg ttaatatctt gtttagaact
    14581 cttagcataa taatttatac cttggagttt tttataagta gaattgcttt tatcataaag
    14641 ttcgttatca ttaaaataat gctctggaat attgaaattt cgattgtctg tagtatttgc
    14701 ttgagtggct gcaaaagcgt tgatacttaa gaaggtaaca atagaaagtt taaaacaaaa
    14761 tttctctata ccccgccccc gtgaagttaa aaagcttaat agctggcata gatgtccttg
    14821 aatattgatt attatatttt aactatttaa caatatctgt aaatatcatt aaaagtaagc
    14881 gtaattataa ttataatatt cttaaatata tattaattat aaataaaata tttaaataat
    14941 attaataata aaaaagttat tttttaattt tatttttata atatatattt aatattatta
    15001 aaaagcttta ttaaattaag attggacgga attttttaat ataaactaaa aagcgatatc
    15061 aaagaatttc cgttgtataa tccaatgttt tttaaatgta aaatattttt taaggtaaag
    15121 cgatgaaaat gcgtgtgtat tatgaagata ctgatgcggg tggagtggtg tatcatagta
    15181 attatttaaa attttgcgag agagcaagaa gtgaaatttt tttcaataaa aaagtagata
    15241 tttttgatgc gtctaaggga cattttttgc ttgcaaaagc aaattgcaat ttcttaaaac
    15301 ctgcaaaact tggagatatg atagagatta aaacaaaaat tttagaagtc aaaaatgctt
    15361 ctgtggaaat tttacaagaa atttataaag atgaaatttt gctttttaaa atggaattaa
    15421 ctttagcttt tattaaaaac gaaaaaccag ctagaatgga tatgcagtta aaaaagctct
    15481 ttgaagaatt attttaattc ttcaaagctt gcttgtttgc cttgcataag acgcactttg
    15541 taatcaactt gagaattttt gattttctca tcaaataaac tttcgctttt tttatttaag
    15601 aattcggtat aaaagtaatc aactcctata ctagtagcat aagcaatcca gttataatct
    15661 atactttgat taaaaatttc attaagatag actaagttat catcgtggtt attgatggaa
    15721 ttagcaatga tgaaattttc tctatctcct tgttgtgtta aacttaaaaa tgttggatta
    15781 tagttgattt gagtggataa aagcacataa ggatgaatgt tataaattct tagttgagaa
    15841 cttgctagag ctgttttgat caatggagtg ttaaaaaata ttgaggcatt attaactcca
    15901 ccttgtgatc ttaaaagcct gctaaaatca agcttctcgc cttctatggt atatattcta
    15961 gcattattat tttgagcaag aattcttgaa tttagattgc ttgataaagc agagccatcg
    16021 ctaaatattg cgatattagc atttgatttg cttaaaagtg tggcaatttg agcatcatag
    16081 tcaatacttc caaaaataat attttgattt gaaatttgta tgttgttttt atggatagtt
    16141 ggtatgaaaa ttttcatatt tcctgagtaa tttttcaact cgttagcacc ttttagagta
    16201 aatccagcta tggcatactg atatccttga gcttgtgctg catcaagtgc ggctcggatt
    16261 ttatcactat cttctgtgcc ggttaaaaaa acttttactt tgatttcagc tctttgtctt
    16321 aaaagataag ctatgcttga atttattata gtatttgagt aactttttat agttttttct
    16381 gggataatta tcgcaagttt aacagaagta attttttgaa catttttttc aaaatcagta
    16441 atggaattta ataattttgc ataaacatta gatagaaatt gatcgttttg atctgcaaat
    16501 tcacttaaaa aactgagata caatcttgat tctaaaagat caaaaagaca gtttgtgttg
    16561 cattcttgaa cgcttaattt aggataaaaa ttttcaacag gttttacatc gactaatttt
    16621 tgctcttttg cattaagcaa aaagcaagat aagaaaaata ttagaaatat ttttttcata
    16681 aaaatccttt aatttttttt aaatcttgta tgaaattttt ttcataactt ggattttttt
    16741 ctataaaatc taaatcataa cttggcat
//
LOCUS       DAEDTT010000024        16726 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.024, whole genome shotgun sequence.
ACCESSION   DAEDTT010000024 DAEDTT010000000
VERSION     DAEDTT010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16726
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.024"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            6..1457
                     /locus_tag="KLC54_000606"
     CDS             6..1457
                     /locus_tag="KLC54_000606"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HBD9177004.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYEDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTRTLERFIISSEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNITCKIYDEKFLAKEKMNAFLAVNRA
                     SVHPPRLIHLSYKATNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAAMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPHLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            1454..2557
                     /gene="ychF"
                     /locus_tag="KLC54_000607"
     CDS             1454..2557
                     /gene="ychF"
                     /locus_tag="KLC54_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HBD9177005.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPEKIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVNENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(2579..3961)
                     /gene="argH"
                     /locus_tag="KLC54_000608"
     CDS             complement(2579..3961)
                     /gene="argH"
                     /locus_tag="KLC54_000608"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HBD9177006.1"
                     /translation="MKNEMWSGRFSGASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVKSEIEQGKFVFDIKDEDIHMAIEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELLKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYATNRELSAEIL
                     GFKDIMPNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGLFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(3971..5545)
                     /gene="pckA"
                     /locus_tag="KLC54_000609"
     CDS             complement(3971..5545)
                     /gene="pckA"
                     /locus_tag="KLC54_000609"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HBD9177007.1"
                     /translation="MKKFDNLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKINQPITKELFDKLLTKAKQELSGKKIYVQ
                     DAFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     HEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     IAKCEFENFEVFNLAIPKALEGVESTLLNPINTWLDKNAYTETRDKLAHMFVQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            complement(5558..7357)
                     /locus_tag="KLC54_000610"
     CDS             complement(5558..7357)
                     /locus_tag="KLC54_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HBD9177008.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFAMMDRFRAIVGKDANLQTLARGVNTVTLDTGSSELID
                     LHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIVKYGLKHEITITLMDLPSNCKGAHD
                     VPFYEKILKEILAAEIPFHSICFKDASGTSNPNKIYETIKMARKILPQDTHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKDKDYDLGGFEEEKI
                     LKYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWKKIAEGYGKMVLGYFGKTPVAPD
                     ANIIELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEGIETSEENIFVAAACK
                     EKGIAFLKGEAKVNVRKLASMPKPMSVDENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEVLAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIISELCIKIGDTVNEGEVLAIYKN"
     gene            complement(7390..8730)
                     /locus_tag="KLC54_000611"
     CDS             complement(7390..8730)
                     /locus_tag="KLC54_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HBD9177009.1"
                     /translation="MRTYFSKIGFVLAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFVLSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNLITTNLTSSVFFFILSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFSHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGAGIVFVSLMSLFNQLGALGYIFAFCFFLALFFAGITSAVSMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLPLGA
                     IVCSIFVGFFMNKKQIYKIFSKFISRKIFLIWLFFIRFISPIAIILVMCYQIFV"
     gene            complement(8743..10077)
                     /locus_tag="KLC54_000612"
     CDS             complement(8743..10077)
                     /locus_tag="KLC54_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HBD9177010.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFTSEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFMMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFAFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSISSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFEPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
     gene            10311..10649
                     /locus_tag="KLC54_000613"
     CDS             10311..10649
                     /locus_tag="KLC54_000613"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HBD9177011.1"
                     /translation="MKKVLFLLLACAAVAFAAETNAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
     gene            10684..10769
                     /locus_tag="KLC54_000614"
     tRNA            10684..10769
                     /locus_tag="KLC54_000614"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10718..10720,aa:Leu,seq:gag)
     gene            11844..12072
                     /locus_tag="KLC54_000615"
                     /pseudo
     CDS             11844..12072
                     /locus_tag="KLC54_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881942.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
     gene            12076..12435
                     /locus_tag="KLC54_000616"
     CDS             12076..12435
                     /locus_tag="KLC54_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HBD9177012.1"
                     /translation="MKDLDYYLNLPYEIIIKKLDEKDGGGYFARYKDFPYIMGDGENE
                     IEALKDLKEAFKGALEVMLEKGDYIKEPIDNEAKIRINITLPKSLVEAIDTISDNRSK
                     FLADLANSAIKSYKIST"
     gene            complement(12920..15649)
                     /locus_tag="KLC54_000617"
                     /pseudo
     CDS             complement(12920..15649)
                     /locus_tag="KLC54_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807409.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
     gene            complement(15915..16378)
                     /gene="traN"
                     /locus_tag="KLC54_000618"
                     /pseudo
     CDS             complement(15915..16378)
                     /gene="traN"
                     /locus_tag="KLC54_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853989.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraN"
BASE COUNT         6053 a         2875 c         2345 g         5453 t
ORIGIN      
        1 aaatcatgaa atttgaatta aacgataaaa aactagatgc tataaaagca gactttgaac
       61 ttgtttttat acaggataaa aatttaaaaa tttttaacaa agaaaaagat ttttttaaac
      121 ttaataatta caaaggtgaa ggtgcattat tagacttaaa caataaaaag ctttatttag
      181 agcttaaaag tcttgcttat gaggatataa gattaagtct ttgcacagca tataaaactc
      241 ttgagaaact taatattaaa agcgtaaaac ttcctagcat aataggagat tgtgtagtta
      301 gaagttttgc atctttagtt gaaggcgtac tttttggagc ttataaattt gacaaatata
      361 aaagcgagaa aaaaacaaga actttagaaa gatttattat ttcaagtgaa gaattaaatg
      421 gtaaaaaatt taataaagat gaagctaaga taggtttaga gcgtggagaa attttagcca
      481 atgctacaaa ttttaccaaa aatatagtca atgaaattcc tgaaatttac acccctttaa
      541 aaatggcaga agatgcacaa aatttagcta aagaaaataa aaacatcact tgtaaaattt
      601 atgatgaaaa atttttagct aaagaaaaaa tgaatgcctt tttagcagta aatcgcgcct
      661 cagtacatcc tccacgcctc attcatctaa gttataaagc cacaaatgca aaaaaacgtg
      721 ttgtatttgt tggaaaaggc ttaacttacg atagcggtgg attaagctta aaaccagctg
      781 attttatgct tacaatgaaa gctgataaaa gcggtgcagc agcagcaatg ggaatcataa
      841 aagccgtagc tgaacttgct ttagatttag aagtgcattg cattttaggt gcaactgaaa
      901 atatgatagg cggcaatgct tataagcctg atgatgtgtt aatcagtcgt gaaggtgtaa
      961 gcatagaggt aagaaataca gatgctgaag gacgcttggt tttagccgat tgtctttctt
     1021 ttgcacagga tttaaaacct gatttactta tcgatatggc aactcttact ggagcttgcg
     1081 ttgtaggact tggagaattt acaagcgcta ttatgggaaa taatgaagaa ttgcaaaatg
     1141 atttttatct aagctccaaa aaaagtggag aatataccac aatcttacat ttcaaccctc
     1201 acttaagaga acttataaaa tcaaatattg ctgatgttag caacactgcc tctagtcgct
     1261 acggaggtgc aattaccgca ggattatttt tagataaatt tattcgtaaa gaatataaag
     1321 acaaatggct acatcttgac atagcaggac ctgcttatac agaaaaatct tggggatatt
     1381 ctagttttgg cgcaggtgga gctggagtta gaatgtgcgt taattattta attcaaattt
     1441 taaggaaagc taaatgagtt taagtgtagg tatagtagga cttccaaatg ttggcaaatc
     1501 aacgactttt aatgctttaa ctaaagcaca aaatgcccaa agcgcaaact atcctttctg
     1561 caccatagag cctaacaaag ccatggttga agttcctgat ttaagactta atgaacttgc
     1621 caaaatcgta aaacctgaaa aaattatgca ttctttaata gaatttgtag atatcgctgg
     1681 acttgttaaa ggtgcaagta aaggcgaagg cttgggaaat aaatttcttt caaatatacg
     1741 tgaaactgag gttattttac acatagtgcg ttgttttgat gaagaaaata tcacccatgt
     1801 tgaaggtgga gttgatcctt tacgtgatgt agaaattatc aatacagagc ttattttagc
     1861 agatattgag caacttagta aaaaaataga aaaactcacc aaagaagcca aagccaatca
     1921 aaagggtgct aaagaaagtc tcgaacttgc aaattcctta cttgatcatt taaacaaagg
     1981 cttagctgca agttcttacc ctgaaaaaga aagtgaaatt tatcaagcct taatcaaaga
     2041 attaagactg ctttctgcta aagaagtgat ttatggtgca aatgttaatg aaaatggtat
     2101 tagtgaagat aatgattatg taaaagcttt aaaagaatat gctaaaaaaa atgatcatga
     2161 agttatcaag ctttgtgcaa aaatcgaaga agaattagta ggattaagtg atgaagaaag
     2221 tcatgaattt ttaagttctc taggagttaa cgaaagcggt cttgatcaaa tcatacgcac
     2281 tgcttttgct aagcttggac tgatcagtta ttttaccgct ggtgtagttg aagtgcgttc
     2341 ttggacaatc aaaaaaggtt ggaaagcacc aaaagcagca agtgtaattc acaatgactt
     2401 tgaaaaaggt ttcataaaag ctgaagttat ttcctatgaa gattatatcc aatacaaagg
     2461 cgaaaatggc gccaaagaag caggaaagct acgccttgaa ggaaaagact atatcgtttt
     2521 agatggcgat gtaatgcatt ttagattcaa tgtttaggca aaatagccta aacaatattt
     2581 ataaattttg aataaaacct tccaaaattt gaatttgctt ttctacgctt gcaatagaac
     2641 ttgagccttc actttgctta gaatttaaag aaaattcaaa atttaaaagt tccatagctt
     2701 tttcatcaaa tacaggatct atttttgaaa gatctttaat ttcacttata tcaatgcctt
     2761 gtgcttcagc ttgtgcaaca acatttccca ctataaaatg tgcttttcta aaaggaatat
     2821 ttttttcacg caccaaataa tctgccaaat cggtagccaa caaatgacct tttttacaag
     2881 cattaagcat attttctttg ttgatttgta tttcttttaa cattgcattt aagataatta
     2941 agctatcttt agccgttttt acactatcaa aaagcccctc tttatcttct tgcatatctt
     3001 tattataagc taaaggtaaa gctttcatta tagttaagag agaaatcaaa tttccataaa
     3061 cacgccctgt ttttccacgt ataagctcac aaacatcggg attttttttc tgaggcataa
     3121 tagaacttcc cgttgaaaaa ctatcactta tggttataaa agaaaattct gagcttgaaa
     3181 ataaaatcat ttcctcacaa agtcttgaag tgtgtgtaaa aataactgct atatcataaa
     3241 gcaaatcaag agcaaaatcc ctatcactca ctccatccat agcatttggc ataatatctt
     3301 taaatcctaa aatttcagca ctcaactcac gattggtagc atagcttgtt cctgcacatg
     3361 cacaagaacc aagtggcgaa aagtctgcaa gttctaggct attttgcaaa cgcttaatat
     3421 ctcgcattaa cataaaagca taagctaaga tataaaaaga aaaactcaca ggctgagcgt
     3481 gttgtaaatg tgtaaaactt ggcataatag tttttttatg cactttagca tgttcgagca
     3541 tggtttgaat caattctttt aaaagtttta aaagttctat gtgagatttt tttacaaaaa
     3601 gtttaaaatc agtagccact tggtcatttc tacttcttgc agtatgtagt cttccaccaa
     3661 tttcactgcc tataatctcg cttaaacgct tttctatggc catatgtata tcttcatctt
     3721 tgatatcaaa aacaaattta ccttgctcta tttcactttt aacttgttct aagcctttta
     3781 taatagcatc taattcttct ttttttaaaa taccacaact ttcaagcatt gtagcatgcg
     3841 ctatagatcc ttgtatatct tcattaaaca aagttttatc tacatttaaa ctcgcattaa
     3901 attcttttaa aagctcatcg cttgcaccgc taaagcgtcc tgaccacatt tcatttttca
     3961 tttaaatacc ttaaattttt ggtccaaatt tgctaaattc aataccttct ttgacatctt
     4021 cataacgttt gaaattttgc acaaacatat gtgctagctt atctcttgtt tcagtatagg
     4081 catttttatc taaccaagta tttataggat ttaaaagcgt gctttctaca ccttctaaag
     4141 cttttggaat agctaaatta aacacttcaa aattttcaaa ttcgcatttt gcaatactcc
     4201 catctaaaat agcattaatg caagccctag tagccttaat actcattctt ttacctacac
     4261 cgtaacttcc accgctccaa cccgtattaa caagataaac attaacttca tgtttttcaa
     4321 tcttttcacc aagcaatctc gcataaaccg ttggatgtaa aggcataaaa ggttctccaa
     4381 agcaagctga aaaagttgct tgaggctctg ttataccacg ctcagttcca gctacttttg
     4441 ctgtataacc gcttaaaaaa taatacatag cctgttcttt gcttaattta ctcaccggag
     4501 gcaaaattcc aaaagcatct gcacttaaaa atataatatt ttttggatgc cctgctttta
     4561 agctaggctc atgattttca atatgctcta taggataaga aactctcgta ttttctgttt
     4621 ttgaagcatc agcataatca acactcttat cagctcttaa aactacattt tctaaaagtg
     4681 catttctttt aatcgcgcca taaatttcag gctcatgctc aggatcaaga ttgattgttt
     4741 ttgcataaca accgccctca aaattaaaca caccttcatc atcccagcca tgctcatcat
     4801 cacctatgag tcttcttttt ggatcggttg aaagcgtagt ttttcctgta ccgctaagtc
     4861 caaagaaaag tgccacatcg tctttttctc cgacatttgc actacaatgc atagaaagtt
     4921 tattttctag tggcaaccaa taattcatca tagaaaaaat accttttttc atttctccac
     4981 cataccaagt tccaccaata accgctatat tttcttcaac attaaagatc acaaaaacct
     5041 ctgaatttaa accatcttgt ttataatctt cattaataca tttgcaagca ttataaacaa
     5101 taaaatctgc tttaaaattc tcaagttcct cttgacttgg gcgaataaac atatttttaa
     5161 caaaatgcgc ttgccatgca atttcagtaa caaatcttac tgctttgcga ctttgcaaag
     5221 aagcaccgca aaaagcatct tgaacataaa ttttctttcc acttaactct tgctttgctt
     5281 tagttaaaag tttatcaaat aattcttttg taataggctg gtttatcttc ccccaagcta
     5341 tatatttact agatggatct tgttttacaa aatatttatc tttaggactt ctacctgtaa
     5401 aaattcccgt atccacacaa aaagtatcat tatccgtgct taaaccttca ttatttgctt
     5461 tttcatgagc atttaattca tcataactta aattatgaaa aatttccttt atattatcta
     5521 aacctaaatt atcaaatttt ttcatttttc cctcacttta attcttgtaa atagctaata
     5581 cttcgccttc attaacagta tcgcctattt taatacaaag ctctgaaata attccatctt
     5641 ttggagcatt aacctcaatc tccattttca ttgcttctaa aaccatgata gcttgacctg
     5701 attttacttc ttcgccttcg ttaacataaa ttttaaaaac attacccgaa atacccgcta
     5761 aaacttcatt ttcagcatcg acagaacttg tcgaatttga agaaataata tttttatttt
     5821 cttctacttt tttcacactt ttaacattaa catctttatc aaaaccataa cttacttcta
     5881 catgatattt attaccattt acagctacgg taaatttgtt ttcatctaca ctcataggtt
     5941 ttggcatact ggctaatttg cgtacattta cctttgcctc tccttttaaa aatgctatac
     6001 ctttttcttt acaagctgct gcaacaaata tattttcttc actcgtttct ataccctctt
     6061 tttcaagcaa ggttttggta taagctatac ttttactctc atctttatca gctatattta
     6121 tagcaagctc tgtagtaggt tctaaattaa gttgttttga agcaagctca ataatgtttg
     6181 catcgggtgc aactggagtt tttccaaaat aaccaagcac catttttcca taaccttctg
     6241 cgattttttt ccaaggccca aacataacat tattaaatgc ttgttgaaaa taaaattgag
     6301 aaactggagt aaccgaagta ccaaatccac ctttttctac aacttctctc atagcatgaa
     6361 tgacctgtgg aaatttatct aaaatattat tatccctcat catttgtgta tttgccgtta
     6421 aagctcctcc tggcatagga gaaaaaggaa taagtggatt taccatagta gcttcagggg
     6481 gtaaaaaata ctcttttaaa caatctttta aaacttcttc gtattttaga attttttctt
     6541 cttcaaatcc acctaaatca taatctttat cttttaaggc atgcatcatg gttaaaatat
     6601 caggctgaga agttccacca cttacaggag ctgcagccaa atcgatacca tcaacacctg
     6661 cttcaagtgc tgcaagatag caagctatac tcactcctgc agtttcatgc gtatgaagcc
     6721 taatgtgtgt atcttgaggt aaaatttttc tagccatttt aatggtttca taaattttat
     6781 ttggattaga agttccactt gcatctttga aacaaatact atgaaaagga atttctgctg
     6841 ctaaaatttc ttttaaaatt ttttcataaa aaggcacatc atgggcacct ttacaatttg
     6901 acggtaaatc cattaaagtg atagtaattt catgctttaa cccatatttt actatacatt
     6961 caccactaaa ttttaaatta tttacatcat taagggcatc aaaatttctt atcgttgtag
     7021 taccgtgttt tgcaaaaagt tttgcatgca aatcaataag ctcactactt ccagtgtcta
     7081 aagtaacggt attgacccct cttgctaaag tttgaagatt ggcatctttt cctacaatag
     7141 ctctaaatct atccatcatg gcaaaagcat cttcattaag ataaaaatac aagctttgaa
     7201 atctagcacc accgccaaat tcaaaatgtg taatgcctgc ttcttttgct gcttctactg
     7261 caggaaaaaa atcatccatt aaaaccctag ccccataaac ggactgaaaa ccatctctaa
     7321 agcttgtatc cattacatcg atgaattttt tagccattat ttttccttaa aaaaaatatt
     7381 ttttcattat tatacaaaaa tttgataaca cattaccaaa attattgcta taggcgatat
     7441 aaaacgaata aaaaacaacc aaattaagaa aatttttcta cttataaatt tagaaaaaat
     7501 tttataaatt tgttttttat tcataaaaaa acctacaaat atagagcata ctatagcacc
     7561 aagtggaagt aaaaaatttg aagttaattt atctaataaa gtaaaaaaat ctttgccaaa
     7621 aaaactaaac atagaaaaaa aatttaaatt taatgacaag atacaacaaa ttccaaaaac
     7681 aaaaacaaat aaacctatta aaaatagagc tttaacacga gaaatttgat agttattaat
     7741 catataaaaa gttaaaggct ctatcattga aacagctgaa gtaataccag caaaaaaaag
     7801 tgctaagaaa aaacaaaatg caaaaatata gcctaaagct ccaagttgat taaacaaact
     7861 catcaaggat acaaaaacaa ttcctgctcc ttgagtatgc ggatcggctc caaattcaaa
     7921 gataaaagta aaaacaataa gtcccatgat aaaagaaatc aataagttaa tcaaaacaat
     7981 atacactgaa ctttttataa aatttgtttt tttatccaag gctgatgaat atgtaactat
     8041 acaacctatt cccaagcata aggtaaaaaa tgcaagccct aaagcttcgg caatagagct
     8101 aaatttaaaa tgtgaaaaat caggataaaa taaataagaa aaagcatttg caaaaccttg
     8161 cttaaatccc atacaataaa acaacataaa aacaagcatt aaaaataagc taggcattat
     8221 aacaacgttt aatttttcaa tccctttgat taaaccttta gatactatta ataaagtaag
     8281 aaaaaaagat aaaatgaaga aaaaaacaga acttgtcaaa tttgtagtaa ttaaattctg
     8341 aaaattactt gctgcttcat ctaaggtttt aggaagataa taaagactaa ctacagtata
     8401 ttttaaaacc catcccataa taactagata aaaagagaga acaaaaatac cacctaacat
     8461 aaaaacgccg ccatatcgcc atctattgcc atattttatg gcaagatttg aataagcatt
     8521 tgcaagatca cttttactta aacgtcccat agccacttca gccaaaaaaa tactaaatcc
     8581 tatggttaaa gtaaaaaaca aatataaaag cacaaaaaca aaaccgccat tttctgcgct
     8641 taaagttggg aatttccaag cattacctaa accaacagct ccaccagcaa cagccaatac
     8701 aaaaccgatt tttgaaaaat atgttctcat tatttttcaa actcacttta aaaaagcggc
     8761 tatcataact ataacaacag ccaaagggga aataaatctc aaaaacacat accaaagttc
     8821 aaaaaatata cccctcatat aaggttcaaa taaaattttt aaagcttctt ttttcatcac
     8881 aaatcccaca aaaatagctg ccaaaattcc acctaaaggc ataataacct tacttgaaat
     8941 actatcaagc aaatcaaaaa aactcattcc aaaaaatcca aactgagtac tttttaaaga
     9001 agataaaata cacaacattc ctaaaatata aacaacaatt cctattaaaa tcaaagcttt
     9061 tttacggctc ataccaaaag tattaataag ataaaaagca aaaggctcta tcattgaaac
     9121 agctgaagta ataccagcaa agattaaaga aataaaaaac gctgctccaa aaatacaacc
     9181 gatcacccca attttttcaa ataaagtagc caaggaaata aaaacaagcc ctggtccttg
     9241 ctgattagga ttgtaaccaa attcaaagat aaaagtgaaa acaaccaaac ccattaatag
     9301 accaactaaa agattgataa aaataatatt taaagtactg gtaataaaat tagttttatc
     9361 aggcagacta gcagaataag taataatcgt cccaacaccc aaagaaagac taaaaaaggc
     9421 aagtcctaaa gcttcaagaa catttgaagt gttgattttg gaaaaatcag gcacaaaaag
     9481 aaatttaacc gccatcataa aaccatcttt actaatagca taaacaagca tcaagattag
     9541 taaaataaat aatgaaggca tcatccaaac atttaacttt tcaatcccat tcttaacacc
     9601 tttagaaaca atataaaaaa cacataaaaa aaccaaagta aaacaaataa actgacttaa
     9661 aaaatcctca cttgtaaaaa atccaaactg tgctttactt acttctagat ccataggcaa
     9721 atttccagtg atacttaaaa acacatattt aactatccag ccaatcacca aggtataaaa
     9781 agaaactatt aaaatcgccc ccaccatagt aaaaccaaca taagaccaag cttttttatt
     9841 tgaaggtgct aacttttcat aggcattaac cggatctttt tcactaattt ttcctatgct
     9901 aagctcagct aaaaatatca caaaacctac acccaaagta agaattatat aaagcaagat
     9961 aaaagcagat ccaccacttt gacctactag tgttggaaat ttccaagcat tacccaagcc
    10021 cactgctgaa cctgctaccg ctaaaatgaa acctattttt gaaaatttag aactcaatgt
    10081 tgcaacctta acttaaaaat tattttaaaa tattattaaa gcaaaaaaac ttttaagctt
    10141 tattgaaaac aatcaaattt aaatcaaaaa tgtgaatttt tgtaaatttc aataaaaata
    10201 aagatacttt tggttataat tcggctttat ttttaagtct taagtaggga tacgcaagcc
    10261 gaactgattt aaaaattgaa aaaaattttt tttatagaaa ggttaagata atgaaaaaag
    10321 ttcttttttt attattagca tgtgcagcag tagcttttgc agctgaaact aatgctccag
    10381 tagagcaaga agctattaat gtatggatta aagcattttc agttcttgca gcaggcttag
    10441 gtcttggcgt tgcagcactt ggtggtgcta tcggtatggg taatactgca gcggcaacaa
    10501 ttgcaggaac agctagaaac cctggtcttg ggccaaaatt aatgacaact atgtttatcg
    10561 ctttagcgat gattgaagca caagttatct atgctcttgt tatcgcgcta atagcacttt
    10621 acgcaaatcc ttttatagtt ttacaataaa acttatcaaa gccctttttg ggcttttttc
    10681 tatgcggtta tggtggaatt ggtagacacg ccatcttgag ggggtggtgc gctccgcgtg
    10741 tgcgagttca aatctcgcta accgcaccat ttatactgct aactacataa attaacataa
    10801 atataaaact taaaaaatat ctataaaata ggactttaaa actatctaaa atctaaatta
    10861 aatttttccg ttaaaatcca ttttaaaaat ttttccctaa cttttctcct aactttttat
    10921 tttttgtttt aaaaagttag gagaaattag cttaaggagt ttattttaaa tgcttacaca
    10981 aaaagacata ataaaaaaga taaaaactat ttttataaga agttttttgt atttgattat
    11041 aaagatatcc aaaaataaga aaattaacaa gagactaaaa gtattaaggt acattgattt
    11101 gcggaaagga aattctatca cacaaataat caataagatg ataaaacatt tattcaaaaa
    11161 tactataatt aaagcatatt aggcatggct actctttcgg ttacaagaaa gagacatgat
    11221 gagtaagatc attgaatttt tagttcttgt cttagaatta attaatgaga taatcaagct
    11281 catttgatat aatcattgaa aaattttata aaaaccacgc ttagtctaag cttaatacat
    11341 ttatactaaa aaacatttaa ccgaaagaga cgtggctttc ggttatgaga aattcatagc
    11401 aaaaatactt ttacaaaaaa atagaaaaga ttggtaaaaa attagaaaag caaaaaacaa
    11461 gattcgctat aataaaaaat ccgccttgag ttttcactct tggcggaaat ttatcaatca
    11521 aggctaacta tgaaacgaca tagtaagcgt tttgtgagat tatatctaaa ctttaggttt
    11581 tttaagttta aaatggaagt atttttaaca aaaccgcagg acagaaaagc cccttgcctt
    11641 tgttagtaca tgaaactaca aattctcatt catttttcca agtcaaataa aaaagaaatc
    11701 cgtttcaaaa cgcagctcaa taatctcagt cttaatactt tcaattaaac atacaaagac
    11761 aacaagatta aaagaattgc gatcggttta taagtgatac ttaataaaaa gtgtgtataa
    11821 tacatactca taaggatatt atagtgagta aaaaagataa aattattaaa gatttaaaaa
    11881 ataatcctaa caatgtgcgc tttgaaacgc ttaagatttt attagaaagc gaaggttatg
    11941 aatgttttaa taaaggcgga tcacattatc aattcaagaa aagaagaatg tgatcttatt
    12001 actattccat ttaaacgccc tataaaggct atatatgtca aaatggtttt aaaagctata
    12061 acaggagaat gaatgatgaa agacttagat tactatctta atctacctta tgaaattatt
    12121 ataaaaaaac ttgatgaaaa agatggcgga ggatattttg caagatataa agatttccct
    12181 tatattatgg gagatggtga aaatgaaata gaagccttaa aagatctcaa agaagcattt
    12241 aaaggagcat tagaagttat gcttgaaaaa ggtgattata ttaaagaacc tattgataat
    12301 gaagcaaaaa ttagaattaa tattaccttg cctaaaagct tagtagaggc aatagataca
    12361 ataagcgata atagaagtaa attcttagct gatcttgcaa atagcgctat aaagtcttat
    12421 aaaataagca cttaaaaatt gacatagtta aataaaaaaa agaaatccgt ttcaaaccac
    12481 taaaaaatag gcattttata gcaaaaatac tttcaaaatt tattaaaata tggtataatt
    12541 ttattaaaaa tatgaataag ttattagtca aggagtaata ttatgctttc cacatactta
    12601 gttgttagct ttttaatatt tattgtgttg tttttttcaa ttttaagttt ttatatgatt
    12661 tttctaaaaa acagaaatac agaaaaaagg gaaactaaaa taattaataa aattttattt
    12721 ctcttatgtt ttctcttact aatttcaatt tcgattttaa ttggagttta tttaggagta
    12781 ttaacaactg ttaaatctgt cgtaattgct tttattgcat tagtttttat attatcgttg
    12841 ttttttatag ctttttctgt aaattgtgct attttagatt ctattttatc tttaaacaaa
    12901 aggctataaa gccttttgtt taaatagaag gagtatcttt tccaatagga ttccaatttt
    12961 tagaagtttc cctaatagca ttacttcctt ttttattatc ttaagctatt tgcgagtgag
    13021 ttgctccgct tttaacttct tgactatctg gcattgttgt agtgttgctt gttcttttac
    13081 tactttgatt tacttgatct tgatttaaat tagattgagt taaaacactt ctttctgatc
    13141 catcaatggt tttaaaattc atacctgcag cgtgtggcat agtagtgtta tttggactaa
    13201 caatgctttg agcgccatat tgactattat attgtgcaag ttgtgcagga tcattcttaa
    13261 ccatatcgga tacataatta tctgcttttg caaagtattc attttgttga gctgtattaa
    13321 gattgctaaa gtctttatta tctccagcag caagatctct tgcaaccaca ttaagtgtat
    13381 tgtcaatatt attagtacta acagattgaa taccttgttc tgtttgggta tagctttgag
    13441 tatatccaac catttttgaa taagctgtag aatcgccacc tgaaagcgta ttactccaag
    13501 aagaatccat accttttgtg gtagatagag ttttaagaga agctctttcc attatttcat
    13561 tatatgcagc tttttgagct tctgaaaaag tttcaacatt tcctatacct ctttttgaac
    13621 ttgcacttga ttgaatttca gcaccatttc caagaacgct aaaacctgca tgagcagaag
    13681 ctgctaatgc aatttccgcc ttttcttcgc tagttaaatc agttctattt tgaatctctt
    13741 gtccaatatt atttgcaaaa gccttcttaa atgcttcatc tcctttctcc ataaatcctt
    13801 tagcttcatt taaatgcact tgctctaccg ctttgactca tatgtgaata ttgatcatta
    13861 aagtttttat tccaagcatc agaatttgct tgagatacgc tattaacagt tgtcatagtt
    13921 cctgcgctaa gtttggcgcc tgacatcata ccatcaacat ttgttcctgt catatttgca
    13981 ttagagattt cagaattctt tgtattatca cccataactg attgagtatt aaatttagta
    14041 accacaccat ctatatttct tgcatattga agcgatgcta cccctgcatt catcgaccaa
    14101 acttcatctc ctctaggagt agcaatgcta gtttgtgtag ataaggcttg ctgatttgca
    14161 aagcttccag cagcttttga agcacctgtt agagcttgag ataatccaga agcaaaagtt
    14221 acaaatcctt gctcacttgc tttagctata gcataagcta aaacaggagt actcattaca
    14281 aggtaattca tgaaatttga tctatttgct acttctttaa agataagcat gttatctcct
    14341 aagcttaaag ctgcttttcc acctgttatt acttgtgcaa cattcataag attaaaatca
    14401 tttataaaat taataataca aagtatagga gtccaaagca ctatccaaat acatagagta
    14461 aaaaacatct taatatgtgc gtaagagcca aacacaatag aaagcaaagc aacaagccaa
    14521 gacaaaccta tgatgatagc tgttaaataa gctttagcta aaggcaaata agtttgcgcc
    14581 aagtgtcctt gtgcttgtgc atacttgcgt aaaattgctg atccgcataa gcagtatttg
    14641 cagccacaga agcaggattt aatcctactg atttagcggt attaatgatt gcattttgag
    14701 aagcaagcat tatcatggat tgttgcaaat aagatctagc acttacagct tgttcgttat
    14761 agatttgtgc agcgcctaag aacttttgct cataatttgt catatcatct accataccaa
    14821 gcaaagcagc atggatcttc atagcttcat ctgtatcttt ttgaatcatt tcaacgattt
    14881 gaggacctgc atcagaacaa ggcacaacac tttgttcttc aatattattg ttatttgtga
    14941 acaaaggagt aagctgagag ccattgccta tgtttgtgaa aagatcttgc attaaattat
    15001 cagagttttg aaaaagattt ctaccttgtt gattaagcaa gatacctact gaaacgcagt
    15061 ttctaaagta aaaatcaata tttttttgca aagttgcatc aatagccgaa agctttacac
    15121 ttggtaaagt actcattact tgaagtgaaa aacctaaacc tgcattagag aaatttgtag
    15181 attgtggagt tgaaaaatgt ttttccatag cttctaagat aaccttctca aattgtgtca
    15241 ttaatgcaaa gctttttcct atacctatag gaatttgaga aatgacataa tctttgctag
    15301 tgacttcatc atgaatcatg aagcggtgat tattgtcatt tggtgctttt aaaaacatga
    15361 cccacactac agcaaaaagt acaaacattt ttccaaattc aaacacaggg tttgtttgtc
    15421 catccattgc ttttttaata ctaaaaagta ataatgaaat agctaaggct gcattaacga
    15481 tataacttgt ttcagtggtt attcctttaa ccgcttgcat gatttcattc attacatcgc
    15541 cgtaacccca agtataaatt agatttccat tagctatttc agttgcacca aataaaaatg
    15601 aaggtgcaaa aaacaaagtg ctaaggaata acaagtaaaa tcttttcatg gactatatta
    15661 aagaagttaa agagtttgtt tggtataatt gcattaaggg ttttgccaca aggctgcaac
    15721 cctgtggcat aatcacaccc tagaaagggg gtgaactata tgacacgact catacttata
    15781 attatactaa tttgtataat tactgtcaag gcttattagc cttgcccctt ttcttaaggg
    15841 gcgaaactcc cttgtggctt accaaacaaa cttttaacta agcttctctc ctttctaata
    15901 atttattttc ttttttaatt tgtaggtttt ttcgttacat tctcgatatt gttttgaatc
    15961 ttttcttgta ttttcacaga atcagcttgt atttttcctg tgtcaaaact tcctacaata
    16021 tcagcaatga attcacttaa atcaatttcg ctaaaatcta atttttgaaa ttcttcagga
    16081 gtgaagcctt tgcattgcgg accttccgca ctactccacc cttttccaag ctgagggcgt
    16141 ccttgttcat tgaaaattct tcctaattta gaattgaagc aacaaaaact tttctttttt
    16201 caacgcaaat tttagtaaaa cctaaactaa cctttttaga acaataagtt cctacttcat
    16261 gacattttcc tgcatcgttt aatttagcaa gctttttctt atcttcttta caaggtacaa
    16321 atcctaaaaa tacattatcc ttatcacaac atccaccacc aagtaaaccg ccaaacatat
    16381 cccaattttt acaacgatta tcttgtccat tgaatattta tagatactga actatttgaa
    16441 accttattat taaaaaatac aaaatcagcg caaatgtgaa aaaaccgcta tacaacctta
    16501 aagaaattga aaaaaataat ttcaaattca aatgatgcac agtgaaaata agaaaagcaa
    16561 taagataaac tttcaaaata aatctgtctt attgcgtgaa tattaaaaat aaaaataact
    16621 aaagcagatg atctccgcct aaataagttt aaaaatattc aaaaattaaa aacaaaagct
    16681 atattaattt attgttttta tatcattcta aatacaatat atagta
//
LOCUS       DAEDTT010000025        16688 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.025, whole genome shotgun sequence.
ACCESSION   DAEDTT010000025 DAEDTT010000000
VERSION     DAEDTT010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16688)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16688)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16688
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.025"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..850)
                     /locus_tag="KLC54_000619"
     CDS             complement(<1..850)
                     /locus_tag="KLC54_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HBD9177013.1"
                     /translation="MTKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFITTNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKRISREKYLEILDEAMHALLNPSILIKNLEKQMLVLAQ
                     NENYEEAAKVRDQIVTIKDLEVKVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKI
                     ISVNSKI"
     gene            complement(843..1337)
                     /locus_tag="KLC54_000620"
     CDS             complement(843..1337)
                     /locus_tag="KLC54_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177014.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAVNKNKNDEKLSKNSYLELSKGEFKNCFEDEKLFKKFEDLRELIKKG
                     SNLD"
     gene            1476..3011
                     /gene="guaA"
                     /locus_tag="KLC54_000621"
     CDS             1476..3011
                     /gene="guaA"
                     /locus_tag="KLC54_000621"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HBD9177015.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLGLPILGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEVKKDSALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESVWNMGSFAKTQAEKIREEVGSDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSGEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLANVRDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRPSLELLRKADVILLEELKSTGWYDKTWQAFCVLLNIKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEVLENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            3097..4557
                     /locus_tag="KLC54_000622"
     CDS             3097..4557
                     /locus_tag="KLC54_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177016.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKPVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMIADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRNNRLASLEAQMKTLQSEINLKSNAANADPEKLKA
                     RQERLTKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            4797..6047
                     /gene="purD"
                     /locus_tag="KLC54_000623"
     CDS             4797..6047
                     /gene="purD"
                     /locus_tag="KLC54_000623"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HBD9177017.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHAKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            6044..6496
                     /locus_tag="KLC54_000624"
     CDS             6044..6496
                     /locus_tag="KLC54_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HBD9177018.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIIGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAIRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            6486..8534
                     /locus_tag="KLC54_000625"
     CDS             6486..8534
                     /locus_tag="KLC54_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HBD9177019.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKISAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNDPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYILPGAKSGKITQNYLEEYDKENEHTSLYAVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELQNLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            8604..10763
                     /locus_tag="KLC54_000626"
     CDS             8604..10763
                     /locus_tag="KLC54_000626"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HBD9177020.1"
                     /translation="MQYSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     TYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEILNLEIAKDWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAVLTDIMGLEDH
                     DGDMDFKVAGSKDGVTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIIEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKSKHLNLTENQSLKVKISEIKNGKISVDLCE"
     gene            10760..11242
                     /locus_tag="KLC54_000627"
     CDS             10760..11242
                     /locus_tag="KLC54_000627"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HBD9177021.1"
                     /translation="MSKFLTHPFEPFFDKDSKILILGSFPSVKSRQDGFYYQHSRNRF
                     WPILETLFDVKLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLSLIL
                     SQAKIQAIFTTGQSAYKFFVKFHPRLEAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            11300..11510
                     /locus_tag="KLC54_000628"
                     /pseudo
     CDS             11300..11510
                     /locus_tag="KLC54_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344646.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
     gene            complement(11507..12169)
                     /locus_tag="KLC54_000629"
     CDS             complement(11507..12169)
                     /locus_tag="KLC54_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HBD9177022.1"
                     /translation="MEMILFALVMILLVFLFIVLFRQYKSSKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDTYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     VN"
     gene            complement(12187..13371)
                     /locus_tag="KLC54_000630"
     CDS             complement(12187..13371)
                     /locus_tag="KLC54_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD9177023.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHIDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISAVFDVVAFLIACSFVTIYFFIHERKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKI
                     ILIALIFCGICFYLQAVASNVYTLIFVRLFIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGLMASHFSVEFVFAFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            13425..13880
                     /locus_tag="KLC54_000631"
     CDS             13425..13880
                     /locus_tag="KLC54_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HBD9177024.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFISSAGTSG
                     EHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            14132..15403
                     /locus_tag="KLC54_000632"
     CDS             14132..15403
                     /locus_tag="KLC54_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_052795691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major outer membrane protein"
                     /protein_id="HBD9177025.1"
                     /translation="MKLVKLSLVAALAAGAFSAANATPLEEAIKDIDVSGVLRYRYET
                     SNDWSNANFGSGISGKQDHKYRAQVNFSGAISDNFKAFVQFDYNSQDGGYGIDSISNT
                     SDTLTVRQLYLTYTNEDVATSVIAGKQQLNTIWTDNGIDGLVGTGVKVVNNSIDGLTL
                     AAFAMDSFNEKVPATADVVNGTFNKGNVNGDGDVSGALDWSKNIYGAAAIGSYDIAGG
                     QFNPQLWLAYMNENAFLYALDAAYSTTIFDGINWSIEGAYLGNSVDNKLKDRLDAANG
                     NFFALRGTVEVNGWDASLGGLYYGKKDKTTVTTIEDQGNIGSLLAGEEIFYTRGSNLN
                     GDIGRNIFGYVTAGYTFNETVRVGADFVYGGTKTNIIGQGGKKLEAVARVDYKYSPKL
                     NFSAFYSYVNVDTDPESTHHDAVRLQALYKF"
     gene            complement(15519..16643)
                     /gene="dnaJ"
                     /locus_tag="KLC54_000633"
     CDS             complement(15519..16643)
                     /gene="dnaJ"
                     /locus_tag="KLC54_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HBD9177026.1"
                     /translation="MEISYYEILEITQSADKETIKKAYRKMALKYHPDRNQGDKEAED
                     KFKLVNEAYEVLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEG
                     FGSSSRRRKSSNDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDG
                     KLQTCPKCQGRGQVGVSQGFITFAQTCPDCQGSGEKASEKCSDCKGLGYNESKDSVEL
                     NIPEGIDTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFVRDDDDIYIEFPVFFTQ
                     AILGQSIKVPTIRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRIGNQIVQISIKFPT
                     SLNDEQKELLEKLSESFGIKDGMHQEQKGLFEKIANWFKS"
BASE COUNT         6004 a         2801 c         2673 g         5210 t
ORIGIN      
        1 taatcttaga atttacactg ataatttttc cattttgcac tacaaaacgc aaggttgaaa
       61 gcatggaatt ttcaaaagct aaagcaaata cttcaaaatc ttctaatttt gcaatatcta
      121 tttcaacctt aacttctaaa tccttaatcg ttacaatctg atctcttact ttagctgctt
      181 cttcataatt ttcattctgt gctaaaacaa gcatttgttt ttctaaattt tttattaaaa
      241 tactaggatt taaaagcgcg tgcatagcct catctaaaat ttcaaggtat ttttccctgc
      301 taatgcgttt atcacaaggc gcaagacaac gagaaatttg ataaaaaata caaggggatt
      361 tacaacttgc tttttgcttt aaaggatagt ataaataaag cgcatctaaa agctctctag
      421 cgcctttaaa aaaagggcca aaatatttaa ttttgctttt ttttactaat tttctagtga
      481 tctcaaagcg tggaaattct tcttcaaaat ccacataaat ataaggataa gttttatcat
      541 ctcttagtaa aatattatat tttggatgca gttgtttgat aaaagaattt tccaaaatca
      601 aagcatcggc ttctgaatta gtagtgataa attccaaatg cactgtttct tcaatcattt
      661 tttgaattct taaagaattt cttgggtttg catgtaaatt tggagtaaaa gcgaaataag
      721 atttgacacg atttttaaga tttttagcct tacctacata taaaagcttt ccttcttgat
      781 taaaatattg atacactcca gcactattag gaagagtttt taactcattt tctaaatttt
      841 ctttagtcaa gattagaacc tttttttata agctctctta aatcttcaaa tttcttaaat
      901 aatttttcat cttcaaagca atttttaaat tcacccttag aaagctccaa ataagaattt
      961 ttagagagtt tttcatcatt tttgttttta tttactgcat aagtgtattt ttgagaaaag
     1021 atttttatat cttttatatc aacaaatcca cttaaaggat atttttgtcc atacgctttt
     1081 atgagaaatt taatataaat tttgctatca tcatgattta attcttgata agctgctgga
     1141 tgtaaggtta ttatatttaa aatatgattt tttacataaa ttttagcaat caaacgttgc
     1201 ttagcaagcg gaaaagaact taaaaaatct ttgcaaaaaa ataaggtttt taaaggctta
     1261 taatgaggtt tatccatcaa ttcattaata acagcactag cgtttttagt catcttaata
     1321 ttatttcttt ttcccataag atgattttag catttctttt cttaattttc ttctgtgctt
     1381 gcggatataa aggcaaccct caatacacaa gctatgaaca aaatggttcg gtaaaaacca
     1441 ttaaaaaata cgaacaatta cataggtggt aaataatgaa aaaagcagat attttagttt
     1501 tagactttgg ctctcaatac actcagctta tagcaagacg cttaagggaa caaggagttt
     1561 atgcagaaat tttacctttt aatgtgagct tagctgatat taaggcgaaa gaaccaaaag
     1621 gtattatttt aagcggaggt ccagcaagcg tatatgcaac tgatgcgtat ttttgcgata
     1681 aaggtatatt tgacttaggt ttacctattc ttggaatttg ttatggtatg cagcttatgg
     1741 cacatcatta caaagctaca gtagcacctg caggacataa agaatacggc aaagcaaaca
     1801 tagaagttaa aaaagatagc gctttgttta aaaatcttcc aaaaaaacaa actgtttgga
     1861 tgagtcattc tgataaggta gaaaatttac ctcaaggttt tgaagtttta gccacaagtg
     1921 aaaatagtcc tttttgtgtt tttggaaatg aagataagaa attctttgct ctacaatttc
     1981 acccagaagt acaacacagt gaatttggca aaaatatctt aaaaaatttt gctaaatacg
     2041 cttgcaattg tgaaagcgtt tggaatatgg gttcttttgc aaaaactcaa gcagaaaaaa
     2101 tccgtgaaga agtaggcagt gataaagtgc tttgcgcagt aagtggcgga gtagatagta
     2161 gcgtagttgc tgcactttta gctagcgcta taaaagagca agttatagta gtttttgtag
     2221 acaatggact tttaagaagt ggagaaaaag aacaagttga atttatgttt aaaaatacct
     2281 taggtatcga tcttatcagc attgatgcaa gtgaaatttt cctaagtcgc ttggctaatg
     2341 ttagagatcc tgagcaaaaa agaaaaatca taggaaatac ctttatagaa gtttttgaag
     2401 aagaagcaaa aaaacataaa gatgtaaaat atctcgctca aggcacactt tatactgata
     2461 tcatagaaag ttctgttgta ggtgcaagca aaaccattaa aagccatcat aatgtagggg
     2521 gcttacctga aaaaatgaat cttaaactca tagagccttt aaaagaaatt tttaaagatg
     2581 aagtgcgtgc tttagggctt gagcttggac ttagcaaaga agtggtttat cgccatcctt
     2641 tccctgggcc agggcttgct atacgcatta tgggagaagt aaatcgccct agcttagaac
     2701 tattgcgcaa ggctgatgta attttactcg aagaacttaa aagtacaggt tggtatgata
     2761 aaacttggca agcattttgc gtgcttttaa atattaaaag cgttggggtt atgggggata
     2821 accgcactta tgataatgca gtttgcatac gcgttgtaga tgcaagcgat ggtatgacag
     2881 ctactttctc gcatttacct tatgaagttt tagaaaacat aagtcgccgt atcatcaatg
     2941 aagtagaagg tataaaccgc gttgtttatg atatctcaag caaaccacct gcaaccatag
     3001 aatgggaatg atccattttt tctagctctt atttttatta taaaattttt ataaaaataa
     3061 ggctagaatt tattcaagaa atttcaagga agaaatatgc atggaaaaat agctatttat
     3121 atggattcta caggacgtgg aaccgttaca aactcagcaa ataccttttt tgacttcaat
     3181 cgccaaattt ggaatgataa aaaaagtatg ccaagtgttg gtatgcttgt ggaatttaga
     3241 actctttcta gcgaaaaaaa agcagaagac ggcaagcccg ttcaaacaag caaaaccata
     3301 acaggtataa aaccttcaaa atttcaagaa tttaaagaag gggattttat cactgagcat
     3361 gatttttgga aaactgataa tgatgatgaa ttagaagact tgcaaaactc aagaagaagt
     3421 gcttatataa cagaacttta tagaacgaca gactttgaca ctatagaaaa aattcctctt
     3481 tcttttacta tacctcaagc tatacaaaaa tattttgctc atgaaatttt atccgtagaa
     3541 acacttcaag ccaatctaca agatgaaaag gaaattccct gcatacttga ttatcttata
     3601 cttaaaagat ttttatttaa agcttatgat actttaattt ttatggataa tagcatagac
     3661 caaacccaat ttagcgcatt aaaaagcatc atgatgcatt tagagaattc atacaagcaa
     3721 atgatagctg atcaaaaacc aaatatcact aaaattttta acgaaacttt tttatctttg
     3781 cagtgtcatt accaagcttt agtagccacc atagatacaa gaaacaatcg tctagcctca
     3841 cttgaagcac aaatgaaaac tttacaatct gaaataaatc ttaaaagcaa tgcggccaat
     3901 gcagaccctg aaaaacttaa agcacgacaa gaaagattga ctaaactaca aaaagaagca
     3961 gaatactaca gaacaacact aaaaagactt gatgctataa gggaagattt ttataagaaa
     4021 aattacaata ttttcgaaaa tgcttttaaa ctttcacgag aaaagctctt taaaaaaatt
     4081 gtcacaggtt taaatctatg cgcaaccata atggatgtta aaatttggca cttatcttta
     4141 aaatcatcag gggttaaaaa ttcttatttt actatgagta atatagaaaa ttctttctgt
     4201 tctctttctt ttgcagaaca ttacttaagt cgcttaaata aatccgctct aaatcctttt
     4261 gatcaaaaac ttttagtgta tattcaaaaa atcacaaaag aacaaagaaa aaaattttta
     4321 gttgtcacat cggatttaga tttattatgc aaattaaaaa ttgaaaactt ttcacaaaat
     4381 ccgtattatt tagtaaaata cgcacctaaa aaagtaaatt atcagtcttt aatgcgtgat
     4441 aacacctttg atatagtcta tattgatgaa aaacatgttt gggaaaatgt tgccgatatt
     4501 attttacaag gaaagcattt tgacaaatca ggaaaaacca aatttaaact gatttaagac
     4561 atagaaattt aagctaaatt aagttataat ttccttgcct aaacagtttg tggtatttaa
     4621 agtgattcaa cacattttta ttaactgcga ttgtgtgatt taccgtgttc tgtggcatcg
     4681 tttgagcttt gaaaaaagcg agaagttgca gcctttaaaa attacctagc ggttttcttt
     4741 gactttttgg ggtcaatctt tgttaaacgg ctgtttgggt ttaaaaggag atataaatga
     4801 aaataatgat tttgggtagt ggcgcaagag aatactctat tgctttagcc ttaagaagag
     4861 tagacaaaaa tttagagttt tattttgctc ctggaaatgg cgctaccgaa agtcttggaa
     4921 caaatttaaa cctaaaagat ccagtagttt tagcaaccta tgcaaaagaa aaaggttttg
     4981 atctttgtat agtaggaagt gaaagttttt tagctgaagg ggttgtagat atttttaaac
     5041 aacaaggact tgctattttt gggccaagca aagctgctgc aatgcttgaa acctcaaaat
     5101 cttttatgaa aagctttctt aaaaaatacc gcatcaaaac agccaaattt ttaaacacaa
     5161 atgacattga aaaagcaaaa aattttatat atagtttaac ccctcccata gtagtaaaag
     5221 ctgatggact ttgtgccgga aaaggcgtta ttatagctaa aactcatgaa gaagctatag
     5281 aagaaacagc taaaatgctt agtggagaaa gctttggaga tgctggaaaa ctcgttgtaa
     5341 ttgaagaatt tttagacggt tatgaattaa gcatttttgc agtatgtgat ggcaatgatt
     5401 ttgttttact tcctgcagca caagatcaca aaaaattact cgataatgat caagggccaa
     5461 atactggtgg aatgggtgct tacgccccta gctctttagc gaatgaaagt ttgcttagaa
     5521 aagttcaaaa agatattatt ttaccgactt tagcaggtat gaaaaaagaa ggagcggaat
     5581 tttgtggcgt tttatttata ggcgctatga tcgttggaaa taaaccttat gtattagaat
     5641 ttaatgttcg ctttggcgat cctgaatgtg aagttttaat gcctttaatc gaagatcctt
     5701 tagagcttat tttagctgct actcaaagac gcttaagaca cgcgaaaatc aaaatcaaaa
     5761 aagaatttgc agtaggggtt gtatgcgcga gtgaaaacta tccttacaaa agttcaccaa
     5821 aaagtgaaat tactgtaaat aacattcctg aaaactctca tatttcttat gctggagtaa
     5881 gcctagaaga tggcaaatta atggctgatg gtggaagagt tttagtttgc gttggcacag
     5941 gaaaaagtat agaagaagcg caaaaaaatg cttataaact ttgtgataat gtaaatttca
     6001 aaggaaaaca atacagaaaa gacatcgctc atcaggttct taaatgaaag aaaatttaca
     6061 agaccgctta gagcgtgaaa atctaaaaat agcaagtttt ggaaaaagag ttctagcttt
     6121 tttaatcgat gatatggtta tttctttgat tgtatttatc attttttatg atcgtctaat
     6181 ccaagcaaaa gatttatttg aaacgactca aattatagga aatttttatc ttggcttcat
     6241 cttgcttcat tttagctatc aagcgatttt tacttatctt tatggggcaa gtttgggaaa
     6301 aatattatgc aaaattatca tcttggatga aaatcttctc gacaaaccca atctcatcca
     6361 aagttgcatc agatctgcca taagacaagt tagtgctatg gcgtttatgc ttgggtttgc
     6421 ttgggcttta agcaatgatt tgcgcaaagc ttgggaggat tatctagcaa ggacaatagt
     6481 agtcgatgtg gcgtaaattt tccctattgc taggaactag catagcttta aatgcagcac
     6541 aagttgatat ttacgctctt gatgcaaaaa aagaaggtga tattcttact gcaaacaatg
     6601 atgttattat tttttctgat ttttatttca tcactgccaa taaagcaatt tacaatgaaa
     6661 aaaccggaga tgttgagctt tttggcgatg ttaacatcct aaggggacaa aacgaaagat
     6721 cacattctga ttatgctaaa atcaacctaa attccaatca agccgatttt agtaattttt
     6781 tcttttccaa taacaatctt gaagtatggt ttcaaagcaa aacaagccat ctaaatgata
     6841 aagtctttga aagcaaaatt tcagcagttt caagctgcaa tgttgaagat cctgattggg
     6901 aaattcgttt ttcaaaaggc tggcttaacc gggaaaccaa ttttgttcat ctttacaatg
     6961 caagattata tgttaaaaat accccagttt tttatctacc ttattttgga tttagcgctg
     7021 atactcatag acaaagcggg cttttaatcc caaaaatcgt tttaaaaagt agcgaaggct
     7081 tatactatga acaacctatt tatatagcca ctcaagaaaa ttgggattta gaacttgatc
     7141 cacaaattcg aacaaaccgt ggttttggac tttattctac tttaagattt cttgattctc
     7201 catattcaac aggagaatta aattttggtg cttttaggga aaatagctcc tattttcacg
     7261 atgaaaattt gaaaaatcaa acccactatg gaatagaact aaaatactca agagatgatt
     7321 taatcaaatc tttactcagt gataattttc aagaaggcct atggatagat gcaacctatc
     7381 tcaacgatgt ggattattta aatttaggaa gtagggatta tcgagatctt aactcgcttg
     7441 taacctccaa aatcaattat tttttagccg atgaaaacaa tttttatgga gcttatgcaa
     7501 gatattatat cgacacatct aaacttagca acaatacaac cttacaagaa tatccaagct
     7561 ttcaatatca tagattttta aataaccttt ttgatgaacg cttgcgttat tcatttgatg
     7621 cttcatttca taatttttac cgacctgctg gttcttatgc aaatgagcta aatttagact
     7681 tgcctatctc gtatcacaac gctttttttg gagacttttt acactttact tttacagaaa
     7741 gattttatgc ttcttttgta aattatagca acgatcccga aagaaaccat gagcattatt
     7801 tcagaaacac tcatgatttt aatctctaca ccgatctttc aaaagcttat gaaaatttct
     7861 ttcatacttt aaatttaggg gtgaattaca ttttaccagg agcaaaatca ggtaaaatca
     7921 cgcaaaatta tcttgaagaa tacgacaaag aaaacgaaca tacaagtctt tatgctgtgc
     7981 aatatttcta taacaacgaa ggacaaaaaa aactcaaaca cagaatttca cttgactatc
     8041 tcaataaaca aaatgaattc tatgaacttc aaaatctttt aacttattat tttaatgaaa
     8101 acatcaatct taacagcgaa gtgctttact cttatgaaca aagtcgcttt accaatgtca
     8161 tcagccaaat agaagtcaat acaaattcaa aatttaattg gatgttttct catgcttatc
     8221 aaaacgatga gtatggaaaa tatagcttta ttggcacaag agcaaattat attgccacac
     8281 ctaattacaa tttatttggt ggaatttggt ttgatactca aagagctcat gcaaacatgt
     8341 gggaacttgg ctatacctac caaagaaaat gttggaacta ttctttaatg tatagagaaa
     8401 gaatcgatcc acaactcaca agtggtggca tcacagctaa aaatcaaagc ggagtttatt
     8461 ttattttcaa cttctatcct ttaggaggag taaaatacga tttctcttta gcagaaagtg
     8521 aaaacaaaat ttaaaaagga tgaaatttgc taaatatttt aaaaaatttt acgaatttat
     8581 tatctggtaa aaaaggaaaa ataatgcaat acagcataga aattaacaaa aatacagaaa
     8641 tatttgatat agacaaagtc gccaaacaag ctgccggtgc tgttttaatg agacaaggca
     8701 aaagcgttgt tctagctaca gttgcaagag aagaaaaaca agttgaagaa gattttttac
     8761 ctctaaccgt ccaatacatc gaaaaagctt atgccgcagg aaaaatccct ggtggttatg
     8821 tcaaaagaga aaccaagcca agcgatgcag aaaccttaac agcgcgcatt attgatagaa
     8881 gcttacgccc tctttttcca aaaggctata cttatccgac tcaaatcgtt gtgatggttc
     8941 tctcagctga tcctaaagta gatttgcaag taatgagctt aaatgccgca agtgtggcac
     9001 tttatcttag tgatatacct atgaaagctc cagtatgtgg tgtgcgtata ggaaagatag
     9061 atggaaattt catactcaat ccaaacaatg aggaacttca aaatagcacc ctagatctct
     9121 atgtagcagg tgtaaaagat gagcttttga tgatagaaat gagagcctta cctgatcaaa
     9181 aagaaaatga aatctttatc gaagctcctt atgctgatgt tttaactcaa accacttcac
     9241 aaaatatgaa tgaacttagt gaagatgaaa ttttagaagc tctaaattta gctcaaaaag
     9301 ctatattaaa tggttcaaat gcttatgaag aagcctttag caaacacaaa aaaaattctc
     9361 aaatcgaact aaaaaatgag attgaacatc ctgaaatttt agcttttata gaaaataatt
     9421 tccaaaaaca aatcaaagaa gccatcaatc aaatggcaaa aagcgaaaga gcgagcgaat
     9481 taaataaaat cgctaaagaa attttaaatc ttgaaatcgc taaagactgg agcgaagaaa
     9541 gtgtcttaaa taccttagct aaagtcaaac gcaaacttat tcgtgagcaa attttaaatg
     9601 aaggcaaaag agctgatggt agaagtttaa acgaggttcg tcctatcagt atagaaacca
     9661 atatcttgcc aaacgctcat ggctcttgtc ttttcactcg tggacaaact caagctctag
     9721 ttgttgcaac cttaggcgga gaaaacgatg ctcaaatgat agacttgctt acagaaaaaa
     9781 atcctataag cgaacgcttt atggtaaatt ataattttcc aggtttttca gtaggcgaag
     9841 caagtcctat caaagctcca ggaagaagag aactaggaca tggaaattta gccaaaagag
     9901 cactttatcc aagcgtggat gaaaactatc cttatgtaat ccgcttagtc agtgaaattt
     9961 tagaaagcaa tggctcaagt tctatggcaa cggtttgtgg cggatcttta gccttaaaag
    10021 cagcaggagt gccaagctta aaacttgttg caggagtagc catggggctt atctttgaag
    10081 ataacaagca tgctgtttta acagatatca tgggacttga agatcatgat ggggatatgg
    10141 attttaaagt agctggtagc aaagacggcg ttactgctct tcaaatggat ataaaactag
    10201 gcggaatcga tcaagaaaca ctaaaacaag ctttatatca agccaaagaa ggaagaattc
    10261 acatcctaaa tatcatggaa gaagctgcaa aagaaatcat agtcaatgaa gaagttttac
    10321 ctaaacttga gctttttagc gttgatcctt caaaaatcgt tgatatcata ggacaagctg
    10381 gaaaaaccat caaagaaatc atagaaaaat ttggcgtttc tatagactta gatcgcgaaa
    10441 aaggtgaagt aaaaatagca ggtagtcaaa acgagcaaat caaagccgca aaagactaca
    10501 tcataaacat cacaagctct caaaaaggaa ctaaaaaagg ctctaaagac aaagatatat
    10561 caggctttga acttgggcaa gaatttcaag gtattgttaa aaaaatcgct ccttttggag
    10621 cctttgtgga acttaaaaat ggtgttgatg gtttattgca tagctcaaaa agcaagcatc
    10681 ttaatttaac tgaaaaccaa agcttaaaag ttaaaattag cgaaattaaa aacggaaaaa
    10741 tttctgtgga tttgtgtgag tgagtaaatt tctaactcat ccttttgagc ctttttttga
    10801 caaagattct aaaatcttaa ttttaggatc ttttccttca gtaaaatcaa gacaagatgg
    10861 cttttattat caacactcaa gaaatcgttt ttggcccata ctagaaacac tttttgatgt
    10921 aaaattagaa aatatcacag aacaacaagc ctttttaaga aaaaaacata tcgctctttg
    10981 ggatgtactt caaagttgca agataaaaaa ttcagatgat aaaactataa gttatgcaaa
    11041 agccaatgat ttaagcctga tcctttctca agccaaaatc caagccattt ttactacagg
    11101 acaaagcgct tataaatttt ttgttaaatt ccaccctcgc ttagaagcca tagccctccc
    11161 ctcaacttct cctgcaaatt taaatttttc ttttgaacag cttttacaaa actatgaaat
    11221 aatcaaaaaa tttacaaaat aaaagaatat tttaattttt tagattttag aataattata
    11281 aaaatttaag gagttaaaaa tgccttttgt aaatatacac atcaccaaag aaaacggaga
    11341 acctacaaca gaacaaaaac aagagcttat cgccaggagt aacggattta cttgctaagg
    11401 ttttaaacaa aaataaaagc tccactgtag taattatcga tgaaatcgat acagataatt
    11461 acggactagg tggaaaaagc attacccaag caagacaaga aaaaagctag tttacatcta
    11521 gcttttgcgt attatcctta aattcaaatt ccactctctt agccccaaaa cctttagcaa
    11581 tagcttctaa agtatcctta gcgcttttat gaattttgct ttccaaattt tggataagat
    11641 ttaaagacaa gtctttaacc tcatctttag cttcttttat gagtttgttt ttatcacttt
    11701 cgctaaaact aatccccgta ctattgatag aatcaggcag taaaaaaggt aaaaatttag
    11761 catttttttc atcataaaat ttcatatcta tgatgctgtg tttatatcta cactctggca
    11821 tgatgatctt ataagtatcg tcccctaaag gcaaaatatc aaagttttta tctcttaaat
    11881 catacaaaaa agtgatctca aattcaaaaa tcaaagcaat ctgtctttca ctcaaagacc
    11941 atcctaaaag atttttccaa attccattaa aagcactatc ttttttagtg acaatctctt
    12001 tactaaaaac ttgaaaaaca cttaactctc ctatggattt aagctgcatg atatcgctaa
    12061 agctttgcgt gcttttttct tctattttag agcttttata ttgcctaaaa agtactataa
    12121 ataaaaacac aagcaaaatc atcactaaag caaataaaat catttccatt ttaaaccttt
    12181 ctaaatttat aagccttgat ttgaaaagat atattttttc tcaaacgcta aaaaaataaa
    12241 agcattaatg ataaaaatca aacacacaaa agcaaaaaca aattccacgc taaaatgcga
    12301 agccataagc cctccgccaa aagcaccgca aaaatttccc aaaaattgac aagtttgatt
    12361 aaaaccaaaa atcacactta aatttttagc actcacactt tttttaagca aggcattcac
    12421 acaaggcaaa agccctccaa gtcctacacc tataaacaaa cgcacgaaaa taagcgtata
    12481 aacattactt gctacagcct gcaagtaaaa gcaaattcca caaaatatca aagctatcaa
    12541 aataatctta ctaggcccta tcttatcagc aatttttcca agttttggtg cgaaaaaaag
    12601 attactaatc ccacttgcag ctaccactat acccgcccaa agagccaaat ttccaccttg
    12661 atgaatttgc tcaacataaa tacttaaaat cggcatcact ccaaaagtac caaattgtat
    12721 cacaaaagta gtgataaaaa gaacgatgat aagggtttta ttttctttta ctttttgagt
    12781 atttttcttc gcctcttttt gaatttttct ctcatggatg aaaaaataaa tcgtcacaaa
    12841 agaacaagcg atcaaaaaag ccaccacatc aaaaaccgca ctaatgctaa aaaattcagc
    12901 cacaaagcca ccaaacaaag gtccaagcaa acttccactt atagaagccg tagaaagagt
    12961 tcctaaagca taagccactt tttctttagg tgctatcaca gcgataaaca caacagcagc
    13021 agaagtaaaa cctgagatta tccctgttaa accccgcaca aaaaccactt ctaaagcact
    13081 atgagcaaag ctaagccata aggttaaaac cgacatccca aaacttgcac gaagaagcat
    13141 atttttataa ccatactttg cacccaaaaa agcccacaaa ggtgaaaaaa cagccataaa
    13201 aagcggagtg atcccaaaag caagccctga ataaaacgct atttcactcg tatcaatatg
    13261 tcctagttct ttgatataaa aaggcaaaat cggagcgatt tgactaagcc ccatacttgt
    13321 ggtaaaaaca ccaaaccaac acacaagcaa agttctattg aaattttcca tggatttatt
    13381 gtatgatatt ttttataatt tttaattaaa actcaaggat aaaaatgaaa aaaatactct
    13441 ttatatgctt aggcaatata tgccgttcac ctatggcaga atttatcatg aaagatcttg
    13501 tcaaaaaagc aaatttagaa aaagaatttt ttataagcag tgctggaact tcaggagaac
    13561 acgatggaga aggtatgcac tatggcacca aaaacaagct tgcccaactt aacatagaac
    13621 acaaaaactt cacaagcaaa aaactcactc aaaagctttg cgatgaaagc gattttttaa
    13681 ttaccatgga caattctaat ttcaaaaatg ttttaaaaaa cttcaccaac acccaaaaca
    13741 aagttttaaa aatcactgat tttagtccta gtctaaacta cgatgaagtc cctgatcctt
    13801 ggtatagtgg gaattttgat gaaacttata aaattttatc cctagcttgt aaaaatttac
    13861 ttgttttttt atcaaaataa tttaaaacaa ctatatatta cttctcgttt actttttagg
    13921 cttatacttc taaacgaacc gaaaaacatt cataagaaaa actccttaaa attacacgcc
    13981 tagcttaaat ccctttagct aggcttttct ttagatgttt ttatccttcg gatttaaaat
    14041 ttttactatt ttaagtgctt cttaagaaaa aactccaaat ttatgtgcta caattacgat
    14101 gttttattaa tttttgacaa ggagaattct catgaaacta gttaaactta gtttagttgc
    14161 agctcttgct gcaggtgctt tttcagcagc taacgctact ccacttgaag aagcgatcaa
    14221 agatatcgat gtatcaggtg tattaagata cagatatgaa acaagcaatg attggagcaa
    14281 tgcaaatttt ggttctggta tttctggaaa acaagatcat aaatacagag cacaagttaa
    14341 cttcagcggt gctatatcag acaactttaa agctttcgtt caatttgact acaactcaca
    14401 agatggtggt tatggcatag acagcatcag caacacaagt gatactttaa cagttcgtca
    14461 attatactta acttatacaa atgaagatgt tgctacaagc gtaatcgctg gtaaacaaca
    14521 actaaacact atctggacag ataatggcat cgatggttta gttggaacag gtgttaaagt
    14581 agtaaataac agcatcgatg gtttaactct agctgctttt gcaatggata gcttcaatga
    14641 gaaagttcca gctacagcag atgtagttaa cggaactttc aacaaaggta atgtaaatgg
    14701 agatggtgat gtaagcggtg ctttagattg gagcaaaaat atttatggtg ctgcagctat
    14761 cggctcttac gatatagctg gcggacaatt caacccacaa ttatggttag cttatatgaa
    14821 tgaaaatgca ttcttgtatg ccttggatgc agcttatagc acaactatct ttgatggaat
    14881 caactggagc attgaaggtg cttacctagg aaactcagta gataataaac ttaaagatag
    14941 attagatgca gcaaatggaa atttctttgc tttaagaggt actgttgagg taaatggttg
    15001 ggatgctagc cttggtggtt tatactacgg taaaaaagat aaaactactg taactacgat
    15061 cgaagatcaa ggtaacatcg gttctttact agcaggtgag gaaattttct atactagagg
    15121 atctaaccta aatggcgata ttggtagaaa tatcttcggt tatgtaactg ctggatatac
    15181 tttcaacgaa acagttcgcg ttggtgctga cttcgtatac ggtggaacaa aaacaaatat
    15241 aattggtcaa ggtggtaaaa aacttgaagc agttgcaaga gtagattaca aatactctcc
    15301 aaaacttaac ttctcagcat tctactctta tgtaaatgtt gatacagatc ctgaaagcac
    15361 tcatcacgat gctgtaagac ttcaagctct ttacaaattc taagaagctt tcaagtttaa
    15421 ctttcaaagg tggggtttta ctccgccttt ttttatgcct tatttttaaa acttaaattt
    15481 atataaaaaa ttttcccaag ctaaaagctt taggaaaatt aagacttaaa ccaattagcg
    15541 attttttcaa aaagcccttt ttgctcttga tgcataccat ctttgatacc aaaactttca
    15601 cttagttttt ctaaaagttc tttttgttca tcgtttaaag aagttggaaa tttgatagaa
    15661 atttgaacga tttgatttcc tatgcgagaa ctatgaacat cttttactcc ttctttttca
    15721 agaacaaatc tttgtccatc tttagcaccc tttggtaaat ttaaggtcgc ttcaccgcgt
    15781 atggtaggta ctttaatact ttgccctaag atagcttgag taaaaaacac tggaaattct
    15841 atatatatat catcatcatc tctgacaaaa gtatcatctt cagcagcgat gatcttaaca
    15901 tacatatccc ctctagtgcc attttttaag atattgcctt tagcattgac acgaagtttc
    15961 atacctgtat ctataccttc tgggatatta agctcgacac tatctttgct ttcattataa
    16021 cccaaacctt tacaatcact acatttttca ctagcctttt ctccacttcc ttgacaatca
    16081 ggacaagttt gtgcaaaagt gataaaacct tgagaaaccc caacttgtcc tctaccttga
    16141 cactttggac aagtttgaag ttttccatct ttagcccctg ttccattaca agttttacaa
    16201 gagcatttat aagtaaagtc tatatttttc ttgcaaccaa aaaccgcttc tttaaaactt
    16261 aattttaaat taacgataaa atcggaaggg attttctcat catttgaact ttttctacga
    16321 cgcgatgatg agccaaagcc ttctccaaaa aaactagaaa atatatctcc taaatcctca
    16381 aaaccaccaa aacctgagct actagaacca aatccaccgc cttttaaggc atcttttccg
    16441 tatctatcat aaatagcacg cttttcatca ttgcttaaaa cttcataggc ctcattaaca
    16501 agcttgaatt tatcttctgc ttctttatcg ccttggtttc tatcgggatg gtattttaaa
    16561 gccatttttc tataggcttt ttttatggtt tctttatcag cactttgcgt gatttcaaga
    16621 atttcataat aacttatttc cacattattc ctttaaaaaa tttaaaattt tgctagaatt
    16681 ttaatctt
//
LOCUS       DAEDTT010000026        16684 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.026, whole genome shotgun sequence.
ACCESSION   DAEDTT010000026 DAEDTT010000000
VERSION     DAEDTT010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16684
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.026"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1360
                     /locus_tag="KLC54_000634"
     CDS             <1..1360
                     /locus_tag="KLC54_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HBD9177027.1"
                     /translation="ETNKNNYKTMSSMLSVLSTENILQKTTLNQLNNLMKEIKNDTKS
                     ENLQLFLKHYNMIVKQISIMQDNSSIYENNSLMKELKQLNTFTQNTIEQSNLFKFYIA
                     LAVFGITLVLFVFFILLTLKKVIMPIHTLEKLSANLASKEANLHSRLNIDPKSELGQS
                     AQYINSFISTVQNSIIEAIENAKSSHQNSQKLKNNSMMLENSSNSQHEQIQGVKEITH
                     VLDDHINLAGNLAQESIENMQDMHILMDKVELTLSELVNLINENNEKEQNIVANMDNL
                     TQSADNIIEITNSIKDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVGQLADKTSK
                     SLLNINATVNTIVQQINDNKALMDLIHDSMKETSSKTNDLQQELVNSMHKLESSIEST
                     QTMKDKSMEVKDKMLILGTNIDKVNELANSVKDLSCEINNISQNVLNGASKLSEKLSS
                     FQ"
     gene            1466..1633
                     /gene="dba"
                     /locus_tag="KLC54_000635"
     CDS             1466..1633
                     /gene="dba"
                     /locus_tag="KLC54_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HBD9177028.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            1645..3171
                     /gene="dsbI"
                     /locus_tag="KLC54_000636"
     CDS             1645..3171
                     /gene="dsbI"
                     /locus_tag="KLC54_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HBD9177029.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMSTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(3192..3866)
                     /gene="queC"
                     /locus_tag="KLC54_000637"
     CDS             complement(3192..3866)
                     /gene="queC"
                     /locus_tag="KLC54_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HBD9177030.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            3942..5168
                     /locus_tag="KLC54_000638"
     CDS             3942..5168
                     /locus_tag="KLC54_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HBD9177031.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRAEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMHEFFKENPTIDG
                     VNFFEICESLREYFKI"
     gene            5260..5784
                     /locus_tag="KLC54_000639"
     CDS             5260..5784
                     /locus_tag="KLC54_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YagU family protein"
                     /protein_id="HBD9177032.1"
                     /translation="MKKYFQKRYTLAFFIGILAGIFGAIVKWGWEVPFPPRNPNVFWP
                     ADALERVTPPKIFLEQLGLPTDWTYMFSGMQMPLSIFIVHVGFSIIFGVAYCMIAEKW
                     HRITMWQGAVFGFFVYLFAHVIVMPLIAEVPPLSEIPFDEHLSEIFGHIVWLWGMEIV
                     RRDIRNRITKEIEE"
     gene            complement(5796..7472)
                     /gene="ilvD"
                     /locus_tag="KLC54_000640"
     CDS             complement(5796..7472)
                     /gene="ilvD"
                     /locus_tag="KLC54_000640"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HBD9177033.1"
                     /translation="MRSDAIKKGHLRAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNDYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSRELIANSIE
                     TVMNAHQLDALICIPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYESKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAEQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
     gene            7632..8279
                     /locus_tag="KLC54_000641"
     CDS             7632..8279
                     /locus_tag="KLC54_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HBD9177034.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIIDG
                     KPLEVTTKNLVTAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            8344..8583
                     /locus_tag="KLC54_000642"
     CDS             8344..8583
                     /locus_tag="KLC54_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HBD9177035.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITIE"
     gene            8616..9191
                     /locus_tag="KLC54_000643"
     CDS             8616..9191
                     /locus_tag="KLC54_000643"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HBD9177036.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADASILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(9192..10637)
                     /locus_tag="KLC54_000644"
     CDS             complement(9192..10637)
                     /locus_tag="KLC54_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HBD9177037.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERVLNFKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLIYRSLWEEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGVSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAIIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADTAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVEGVEANDLKREFKEGKA
                     INVEIPNSKKTYKADLVLLAMGFSGCEEAIAKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(10648..15138)
                     /gene="gltB"
                     /locus_tag="KLC54_000645"
     CDS             complement(10648..15138)
                     /gene="gltB"
                     /locus_tag="KLC54_000645"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HBD9177038.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEILKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKNANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHIAYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
     gene            complement(15273..16580)
                     /locus_tag="KLC54_000646"
     CDS             complement(15273..16580)
                     /locus_tag="KLC54_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HBD9177039.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSVSLNDVTNTMYFAAICMIAGLFLALFVFYRKPREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
BASE COUNT         5630 a         3025 c         2492 g         5537 t
ORIGIN      
        1 tgaaacaaat aaaaacaact ataaaacaat gagttctatg ttaagcgttc tttcaactga
       61 aaatatttta caaaaaacaa cactaaatca actcaacaat cttatgaaag aaatcaaaaa
      121 tgatacaaaa agtgaaaatt tacaactttt tttaaaacac tataacatga ttgtaaagca
      181 aatttctatt atgcaagata attcttctat ttatgagaat aattctctca tgaaagagtt
      241 aaaacaactt aacactttta cccaaaatac tatagaacaa tctaatttat ttaaatttta
      301 tatcgcttta gcagtatttg gaattactct tgtattattt gtatttttta ttttattaac
      361 actaaaaaaa gtcatcatgc caattcatac tttagaaaaa ctaagcgcta atttagctag
      421 caaagaagcc aatctacact ctcgtttaaa tatagatcca aaaagtgagc ttggacaaag
      481 tgctcaatat attaattcat ttatttccac cgttcaaaac tcaatcatag aagccataga
      541 aaatgctaaa tcaagtcatc aaaattcaca aaaactcaaa aacaactcta tgatgcttga
      601 aaacagctct aattcgcaac atgaacaaat tcaaggagtt aaagaaatca ctcatgtttt
      661 agatgatcat atcaatcttg cgggaaattt agcacaagaa agtatagaaa atatgcaaga
      721 tatgcacata ctaatggata aagtagaact tactctatct gaacttgtaa atttaataaa
      781 tgaaaataat gaaaaagaac aaaatatagt agccaatatg gacaatctaa cccaaagtgc
      841 ggataatatt atagaaatca caaactccat taaagacata gctgatcaaa ctaatttact
      901 tgccctaaat gcagctattg aagctgcaag agcaggcgaa catgggcgtg gatttgctgt
      961 tgtagccgat gaagttggac agcttgctga taaaacaagt aaatctcttt taaacatcaa
     1021 tgctactgtt aatactatag tccaacaaat caatgacaac aaagccttaa tggatcttat
     1081 ccatgattct atgaaagaaa cctcttcaaa aaccaatgat ttacaacaag aacttgtaaa
     1141 ttctatgcat aaattggaaa gctctataga atcaacccaa accatgaaag ataaaagcat
     1201 ggaagtaaaa gataaaatgc ttatcttagg aacaaatata gataaagtta acgaacttgc
     1261 aaattctgtt aaagatttat catgtgaaat caataatatc tctcaaaatg ttctaaatgg
     1321 tgcctctaaa ctctccgaaa aattaagtag ctttcagtaa cttttttcac gttaatttaa
     1381 cttaacgtga aatttcaata aaaattttat ttttaattta tgtttttcaa gtaaaattag
     1441 cagtttttat ttcaaaggag atactatgga gtttcttgaa cttttattag ttttaatcgc
     1501 cttgatactg attatcaaaa aaccagaaaa agaaaatttg gcttttggtt tggtaatggt
     1561 agcttggctt ttaatggttt ttttctatgt tggccacaaa acaggcgcac tattaacaat
     1621 aatgaatctg taaggaaggg ctaaatgaac gaaatcaata aaacaaaaaa tttctacaca
     1681 ctaatgtgtt tagcaggctt tttgattata ctcttgcctg taggtattgc aaatttgata
     1741 tttggttata tgttgggcga tagtccttgc acgctttgct ggggacaaag agaagcaatg
     1801 atctttatcg gtgtaatggc gcttttcatt gttcgttatg gtatgaaagg taaatacctt
     1861 gctgctcttt taatcatgac agcagtaggg ctttatcaat cttttgctca ctatggtaat
     1921 cacgctcata gagatttaga tcaaggtttt ggtttagcag tttttggtat ccatacttat
     1981 ttttgggctg aagtagtatt ttgggctgtt gtattgctct taggtgtgat ttttgctttt
     2041 gctcctaaat ttaatgcttt tgaagctgaa ctaaatggag aaaagtttag aaaatatact
     2101 aaatttagct ttgcagcagt tttaatcagt gctatcatcg tagcatcaaa tgttttccaa
     2161 gcctttgtta gcacaggtat tcctccttat gtaggacaag gcgatcctgt aagatttagt
     2221 ttaaatccaa aatacatcat ttggagtaaa gaaggttgga atggtttatg gcaaaatatt
     2281 tctttcttag gaaaacgcga tgttaaagct cctgattatg cttttgcacc tgcaagtgaa
     2341 aaacttggca taaaatttga taatgatatc aacaatgctc catttgcaaa aatcaatgat
     2401 gagcttaaaa tcacaaatga acaaaccata aattttgaca aagccatcaa tactcttgat
     2461 tatatcaata acgaatttgt agcaagttct aaatgggatg tagctttctt agataataat
     2521 tttagcgtta aagaaggttt tgaacttgat ccttattttt cagcttctat cgatccaatc
     2581 atcggtatca taccttatat gaacgataaa ttcattctta tgggctcaaa caaatctttc
     2641 ttaagatttg caaaaaatcc taatgcaagt gaagaagata tcgctaaaca atacgctgac
     2701 tttgtaaaag gcaatgataa atttaaaggt caaggcgaaa gtttaggtcg cggaagactt
     2761 gatactgtaa gagcgaaatt taaccatgta gcaagcatga gcacagatgg aaattatctt
     2821 tatcttgcaa ctgttccaaa caacaaagac gctaaaactt ttgtaatctc taaagtttct
     2881 ttaaaagatc gtgttctttc aggagaattt actccaaaag caaatcttaa agaaggtaaa
     2941 actttaggcg atctttatgt aacttctatg acttttaaag atggggaaat ttatgcactt
     3001 agcaaaaatc acaatgtgat tgccgtaatt gatccagtca aagaagaagt agtgaaaact
     3061 atcgctttcc caagctctat cactaatgct agaagcattt tctttaaaga tggaaaaatc
     3121 aatattcttt cttatcaaga tggagcaaac aagctttata ctttaaacta agctttaagt
     3181 cctagtgaaa actaggactt atatttaatc ttatctttaa atcctgcttt ttcaaaacct
     3241 cttaaacgaa gcaaacaact atcgcactcc ccacaagctt catcttcact ctcataacaa
     3301 gaccaagtaa gttctaaagg tacattttct tttaaggcta gttctacaat tttagctttg
     3361 tttagtctaa caagcggagt ttttatacaa actttgaaat tcttactcgt accttcattg
     3421 ataaattctt gtgccttttg tataaactca tcagtacagt caggataacc actgccatct
     3481 tcttctacca cccctataaa aatactctca caattttcct tttcagccaa agatcctgct
     3541 atacttaaga aaattccatt gcgaaaaggc acataagtga taggtggagt atcgcttgta
     3601 caaagctcat ttttagggat gtctatactt ttatcggtta aggcattgcc ccctatatct
     3661 ttgataaaac tcacatctaa aatataagat ttttctactt ttaaagcctt gcaaatttgc
     3721 ttaaaacatt ctttttcttt ttcttgagtg cgttgttcat agtcaaaatg caaagcgatg
     3781 atttcataac cttctttttt ggccagataa gcacacaaag tactatccat accgccactt
     3841 atgatacaaa gtgctttttt actcattttt atccttaaat ttgctataat ttcacaattt
     3901 taacgaaaat ttttaaattt aaattgcaaa aaggcaaaag catgataaac ataaaactca
     3961 tagaacacat ttttaaagcc gcttctatca gtcgttggaa tgattatcca agaatggcaa
     4021 atttggttga acttgacaaa caagctcata aattcatcat cgcatatttt atcgctaaaa
     4081 tggaaaaaga tgtggatatg agagtgatta tagaaggggg aatttttgag tttttaagtc
     4141 gtgttgtggt aactgatata cgccctgatg tgtatcatga aatcgtgcgt caaaaaaaag
     4201 ctgaagttaa tgcttgggtt ttaagcaaaa tcgaacctat gatagaagat atagaagatg
     4261 gggaatttct aaagcgtttt gaagcgtatt taaacggtaa tgcttatgct aaagaaagac
     4321 ttatcttaaa agcagcttca tattttgcta caagatggga atttaacata gtttatcaaa
     4381 cctcagcttt tttaaatgat attgatgaga ttaaaaacaa agttgaagaa gaattagaag
     4441 attactatga gcttatagga gctagaaaaa tcgctttaaa tcaaaaaata gccaaaatta
     4501 ttgatcttag cggaagactt cgctttcaaa aacgttgggc tcaaactcca cgcataccag
     4561 aaaccgcggt tttaggacat atgcttgtgg tggcgatttt aggatatttt tactcactaa
     4621 aaatcaaggc ttgtgataaa agacttgaga ataattttta ttgtgctttg tttcatgatt
     4681 tgccagagtc tttaacacgt gatattatca gccctgtaaa atacggcatt gatggacttc
     4741 atgatatcat aaatgattat gaaatgaaac ttattaatga aagaatttta ccctttgtac
     4801 ctgagggttt aagggctgag ttttcttata ttttaggcat tagagaaggt agaaacggtg
     4861 agtcaaattt tgtaaaaaat gagtttgaaa atcgcactta taaaaatgct aaaatcgagc
     4921 tttgcagcgg aagtttaagc tcttttaatg aaaatgaatt tggcgctata gatggtaagg
     4981 cgcttaaata ctgcgataaa attgctgctt atatagaagc aggacttagt ataagttatg
     5041 gtgtaaagtc taaagaactt gaaagtggtt ttttaggaat gcatgagttt tttaaagaaa
     5101 atcctaccat agatggggtg aatttttttg aaatttgcga aagtttaaga gaatatttta
     5161 aaatttaaat aagattttta tactcctatt ttcaatatgt tttaaataaa aatattataa
     5221 attcaaattt tattttgtat aaaacataaa ggagttatta tgaaaaaata ctttcaaaag
     5281 cgctatactt tagccttttt tataggtata ttagcgggta ttttcggagc tattgttaaa
     5341 tggggttggg aagtaccttt tcctccaaga aatcccaatg ttttttggcc agcagatgct
     5401 ttagaacgtg ttactccacc taaaattttt ctagaacaac taggcttacc tactgattgg
     5461 acttatatgt tttcaggtat gcaaatgcct ttgtcaattt ttatagtaca tgtcggtttt
     5521 tctattattt ttggagtggc ttattgtatg atagcggaaa aatggcaccg tattactatg
     5581 tggcaaggtg cagtttttgg attttttgtt tatctttttg cccatgttat tgtaatgcct
     5641 ttaattgcag aagttccacc actttctgaa attccttttg atgaacacct gtctgaaatt
     5701 tttggccata ttgtttggct gtggggcatg gaaatagttc gtagagatat aagaaatcgt
     5761 ataaccaaag aaatagaaga atgaaaggaa acctttcatt ccatatctaa aaccgcacct
     5821 ttactagcat tgctaacaag tttttgatac attctaagcc atcttgaaga cacctctttt
     5881 tgaggcaatg caaattcttt tttacgttta gcaatttctt cttcacttac atttgcatgg
     5941 atagtataag catccacatc aatttctatt tcatctccat cttttaaaag tcctataaga
     6001 ccaccttcag ctgcttcagg ggaaatatga ccgacgctta aaccccttgt agccccacta
     6061 aaacgaccat cggtgattaa agctacatca gcacctaaac ccatacccat taaaagtgaa
     6121 gtaggactta acatttcttg cataccagga cccccttttg gaccttcata gcgtattaca
     6181 caaacatttc ctttttgcac cttgcctttg ataatgcctt ttatagcttc atcttgagag
     6241 ttaaaacaaa cagctttgcc tttaaatttt ctttctccga ttattcctgc ggtttttata
     6301 acgcaacctt gctcggctaa atttccaaac aaaatggcaa gcccacctac ttttgagtaa
     6361 gcattatcta ctttacgaat gatattttca tctttgattt tggcattttt taagcgttct
     6421 ttgagacttt ctcctgtaat ggtcagtgca tcaagttcta aaatatgtcc ttgtctgctt
     6481 gaaatttcag ccataactgc actcacaccg cctgctttgt ggatatcatc catataaaca
     6541 ctatttagcg atggggctat ttttgctatg tgtgcaactt tgcttgagat gaaatttaaa
     6601 tctttaatgt ctagtgctac ccctgcttca cgcgaaatgg caagcatgtg taaaactgta
     6661 ttgctacttc cacccattgc catatctact accatagcat tacgcacagc tttttgagtg
     6721 atgatattac gaattttaaa acgttcatct agggcgattt cacaaatacg acgcgctgct
     6781 tttcttaaaa gctcttctct ttctttactt aaagctaaaa tggttccatt gccttctagt
     6841 gctataccca tagcttcgca taaggtattc atagaatttg ctgtaaacat tcccgaacaa
     6901 gatccaccac ttggacaggc tgaacattct atatctttaa attcttcttc actaattttt
     6961 ttggattcat aagcccctac agcttcaaaa acagagctaa ggctgatctt ttctcctttt
     7021 ttggttactc ctgaagccat aggcccacca cttacaaaaa tggttggaac attgaccctt
     7081 aaagctccca ttaacatacc aggagtaatt ttatcgcagt ttggaataca gattaaagca
     7141 tcaagttgat gagcattcat cactgtttca atagaatttg cgataagttc acgacttggt
     7201 aaagaataaa gcataccttc atgtcccata gctataccat catctacgcc tatggtatta
     7261 aactcaaaag gtacgcaacc atttttgcgt atctcatctt taatgatttt agcataatca
     7321 tttaaaaaat aatgccctgg gattatatct atatagctat ttgctacacc tataaaaggt
     7381 ttgtcaaaat cttcatcttt caaaccacaa gcacgaagta aagaacgatt aggtgctctt
     7441 aaatgtcctt tttttatcgc atcgcttctc attgtaactc ctgataataa ttttttaaaa
     7501 ttatatttag caaaacttaa tttttgtgaa atttattttg atatacattt tcataaatga
     7561 taaaaattat taattgacaa aaatattttt ttataataca atactttttg ataatcaaaa
     7621 aaggagtcaa aatgagacaa tatgaaacct ataaatgcca aaaatgtggc aatgaagtag
     7681 aagttcaaaa tgtaggtggc ggtaagctta gttgttgtgg tgaagaaatg aaatgtatca
     7741 ctacagattt aactgcagta aatttaatga aagcttttgc aggcgaatct atggcaagaa
     7801 acaaatacga tttatttgct gatgtagctg aagaagaagg ttggcatgcg gttgctagac
     7861 attttagaga agcggctgaa aatgaaaaat ggcatgcaag agcagaattt aaagcttatc
     7921 atgaaatcat tgatggcaaa cctttagaag taactacaaa aaacctagta actgctgcag
     7981 aaggtgaaaa ctatgagcac acaactatgt atccaaattt tgcaaaaatc gctgaagatg
     8041 aaggcaaaaa ggctatagcg agattattta cagctattgg taaagtagaa atcgaacacg
     8101 aaagagaata tctagcgctt aaaaaaatgc tcgaagaaga agaatttttt aatagtgaag
     8161 tagaagaatt atgggtttgt gaagtatgcg gacatataca tcgtggcaaa aaagctccag
     8221 cagcctgtcc tttatgtaaa gcaccaaaag agtattttaa acgcgaattt ttgggttaag
     8281 ttaagaaatt cttatccttt ttaagataat attataatta ttttttaata aaaggataag
     8341 aaaatgaaaa aattactatt tttatttttt gctttaacgg cttttctctt tggtgctgta
     8401 aatatcaaca ctgcaacact aaaagaatta aaaagtttaa atggtattgg cgaagctaag
     8461 gctaaagcga ttttagaata ccgcaaagaa gcaaatttta caagtattga tgatcttaaa
     8521 aaagttaaag gcataggtga taagcttttt gaaaaaatca aaaatgatat cacaatagaa
     8581 taaaagggta tttttgccct tctttttaga aaaatttgaa aactttattt gacacaaaag
     8641 aacttttaaa cgaatttgat ataaatttaa tcggtattga tgaagcagga cgcggtgctt
     8701 tagcaggtcc tatgatgatg gcagcttgca aactgaacaa acaacttgat gggttgtgtg
     8761 attctaaaaa actaagcgaa aaaaaacgcg aagaacttta tgaaatcatc atcaaaaatt
     8821 caaactatct catacttgct ttttcttcag aacaaatcga cgcactaggc ttaagcactt
     8881 gtttaaaaaa aggcttaaaa cttataaaaa agcattttaa aacagaaaat aacttcttat
     8941 atgatggaaa caccaaccta ggtataaacg ggataaaaac acaaatcaaa gccgatgcta
     9001 gcattttgca agtaagtgca gctagcatac tcgcaaaagt tagtaaagat agggtgatga
     9061 atttcttagc taaagacttt ccttgttatg aatttgaaaa aaacaaagcc tatggcacaa
     9121 aagctcataa agaatttata gctaaatttg gaatttgcaa actccaccga aaaagtttta
     9181 aacttttatg attattttgc taaattttga tgcaaactca aagcacattc tataccatct
     9241 tttatagccc aaacaactaa agattgtcct tttctagcat ctccacaagc aaagattttt
     9301 ttatgagtgg tttggaaatt ttctgtgctt atgttgtttt tctcatctaa tttcactcca
     9361 aaatttttag ctatagcttc ttcgcacccg ctaaaaccca tagctaaaag cactaaatcc
     9421 gctttataag tttttttaga atttggaatt tcaacattta tagctttgcc ttctttaaac
     9481 tcgcgtttta aatcatttgc ttcaacacct tctacatgag tttttcctaa aaatttcttt
     9541 gtcatttttt gatattccct aggatctttg ccatatacag caatggcttc ttctaaacca
     9601 taatcagtag taaaaatgtc agcttttaaa ggccaaggat tgttttggct tctttgcaaa
     9661 ggtctttttg gacttctttc aaaacgcact atagatttag ccccttgtct tgtcgccaca
     9721 gcaatacaat ccacacttgt atccccactt cctataacta agacattttt acctttggcc
     9781 gtatctgcac ccttgcctgt ttttaacaaa gttttggtat tttgcgttaa aaaatcaagg
     9841 gcaaattcaa ccccttttag ctttctacct tctatatcaa gatctatagg cttacttgct
     9901 cctgtacaaa gcaccaaagc atcaaattct tttagaagtt ttgaaacctt atctttgctg
     9961 tctatatttt cattcacttt aaattcaatc ccactttttt taagcaaatc cacccgtctt
    10021 tgaactatac ttttatcaag cttcatatca gggatgccat acatcaaaag tccgcctatt
    10081 ttatcgcttc tttcaaaaac acttacttta taacctagtg aatttaaagt gttagcacaa
    10141 gcaagcccag caggcccact tcctatgata gcgatttttt tgccattgta ttgcttaggt
    10201 ttatttactc ttactaaatt ttccttaaaa gcattttcta taatggataa ttcattattt
    10261 tttatactca cactaacacc atttatcgca cacacacaag aatcctcaca aggagcaggg
    10321 caaacacgac cggtaaattc aggaaaagga ttggtaagat caagtctttc ataagcttct
    10381 tcccataaag aacgataaat aagatcgttc cattcaggaa tgagattgtt taaaggacag
    10441 cccacatctt ttccttcgct catcacaccc gtatgacaaa aggctacccc acaatccata
    10501 catcgtccac cttgaatttc ttgttctttt ttatccaaag gtatagtaaa ttctttgaaa
    10561 tttaaaaccc tttccttagg agcaattttt ttaaaatcca ttcttttaaa gtctaaaaaa
    10621 cctcttgcat ttcccatttt ttactcctta tttttgtgtg attttcaaaa atgctgctaa
    10681 atttggatct ttttcatttt tacaaagatc aagcattttt aacatctttt cataatctct
    10741 tggcatgact ttaaaaaagt cttttttatc gaatttttct aaaatatctt tagccttttt
    10801 agaatctgta taagcgatat gtttttctat cacggctttt aattcttttt catccttagc
    10861 attaagatct ttaatatcca caagctcggt atttacatga gcttcattgt gtcttccaaa
    10921 gatataaaca acgcccccac tcataccagc agcgaaattc gcacccacat ctccaagaac
    10981 tacaacttgc ccacctgtca tatattcaca gccatgcaca cctgttccta aaaccacagc
    11041 taaagcccct gaatttctta cacaaaatct ttcccctgct ataccatcta aatacacttc
    11101 accttttgta gctccgtata aacaagcatt tcctgcgatg atattttctt caggtgaaaa
    11161 agtggcttca tttgaaattt ttgctatgat tttaccacca cttaaaccct tgcctaaata
    11221 atcattgcta tcacctataa tctcaagttt aatacccttt aacaaaaacg ctccaaagct
    11281 attgcctgca ttgcctatag ctttgatatg gatactatct tcatctaaag cgtcttttcc
    11341 ataagttttt aaaatttcac ttgaaagcat agtcgcaaaa gtacggcttt gatttcctac
    11401 ttctaaagaa agtttgatag gttctttttt ctccacagca tttttacaaa gtggaagtaa
    11461 aattctataa tcaatcgttt tttcaagctt gttatcttta tagtctttaa aatgcacagc
    11521 ggttctatta taagtaggca aggattttaa aattttatcc aaatttagct ttcctgcttt
    11581 accttgcaca cttttttgac ggagtttatc cacgcgacct atcatatcat ctaggcgttc
    11641 aaaaccaagt cttgccatgt attctctaag ctcctcagct ataaaataca tgaaattaat
    11701 cacatcatct actttgccct taaaacgatc tctaagttct gtatcttgag tagctatacc
    11761 aaaaggacag gtatttagat gacaaactct catcatcgta caacctaaaa caatcaaagg
    11821 cgcggttgca aaaccaaatt cttcagctcc taaaagtgcc gctatggcta aatcacgccc
    11881 attcataagc tttccatcag tttctaatct taccctatct ctaagcttat ttaaaatcaa
    11941 agtttgatgt gtttcagcca aacctaactc ccaaggaatt cccgcatgcg gtatagaagt
    12001 tctaggactt gcacctgtac ctccatcata acctgaaaca aggattaaat tcgctcctgc
    12061 cttagccaca cctgcagcaa ccgttcctat gccattttcg cttacaagtt ttactgaaat
    12121 tttagcgtct ttgttagcat tttttaggtc ataaataagt tgagccaaat cttctataga
    12181 ataaatatca tgatgaggag gtggggaaat aagcgtcaca cctgcagtag aatgtctagc
    12241 cttagctatc caaggataga ctttaaagcc cattaattgt ccgccttcac ctggttttgc
    12301 gccttgagcg actttgattt gaatttcttt tgcatgactt aagtagttta gatccacgcc
    12361 aaaacgccca cttgctactt gcttaatggc tgagttttta tccacaccct ctttgatttc
    12421 atagcgttct tcatcctcgc caccttcacc tgaatttgat ttagcaccta ttttattcat
    12481 agcctgtgcc aaacactcgt gtgcttcttt agaaatagaa ccataactca tcgcccctgt
    12541 tctaaagcgt ttaactatac tttctacact ttcaacctta tctatactga tagcttcact
    12601 aaaatcaaat tccatcaaag aacgcaaatt aacttgtttt tcatctacta aagccgagta
    12661 ttttttaaag cttttatagt ctttgttgcg acaggcttgc tgaagattaa aaatcacaag
    12721 tggatcaatt aaatgttctt ctttagcact tctaaaacca tgaattcctt tagaatctaa
    12781 agccttatgc gtatcgttaa aagcatgttt gtgtaaagca ataagttctt tttcaaaatc
    12841 ttctaaatcc ataccttcga tgcgtgaagt tgtagaagtg aagtatttat caatcacctt
    12901 agagcttaag cccagacatt caaaaagtgc agagccatta taactttgca aggtagaaac
    12961 tcccatttta gaagcaattt tgactatgcc acttgaactt gccttgatga aattttctac
    13021 cgccttttca taacttaaat ttaaatcttt attggcaatg agtttttgta tgctctcata
    13081 aaccaaataa ggattaataa cagtcgcacc ataacctaaa agacatgcaa aatgatgaat
    13141 ttctctaggt tcaccacttt cgataataag acttgtgtgt gttcttaaat tttttcttac
    13201 tagatgatta tgcactccag aaacagcaag caaagcaggg atataagcgt ttttttcatc
    13261 cactccttta tcgcttaaaa tgataataga aacacctttt ttcacctcat cttctatctt
    13321 aacgcaaagt tcatctaaag ccttttctag agttttttta gaataatcat aaagtataga
    13381 aaattcttta acttgaaatt tatttaaagc cttaacttca aaaagttctt cattgcttat
    13441 cacaggcagg gctattttta cgcgttttgc attgttttca tcgggtttta ataaattgcc
    13501 ttcgcttcct agataaatcc ttgtagaagt aacgatctct tctcttatgg catcaagagg
    13561 aggattagtt acttgtgcaa aaagttgttt aaaataatta tacaaaggtt gataagtttt
    13621 agaaagtata gccaaaggag tatctacacc catagctgct atagcttctt taccattttg
    13681 agccatagca gccacactca ttttaagctc atcataactc caaccaaaag ctttttggag
    13741 ttttaaaatc tcatcttctt ttaaaaactg atgtttataa actccgcttt tttgtttttc
    13801 aagttcaact aaatttttaa gccatttttt ataaggctta gcattagcat aatgctcttt
    13861 gatttcatta tcagctataa ccctacctct tgctgtatca acgagtaaaa gttttccagg
    13921 ttctaagcgt tttttagctt tgatattttt ttcatcaagt tttaaagccc ctgtttcact
    13981 tgaaagtatg agcatatcat cttttgtaag ataatacctt gaaggacgaa aaccatttct
    14041 atccaaactc gcccccataa tcactccatc agtaaaaact atagcagcag gcccatccca
    14101 aggctccatc aataaagaat gatactcata aaaagcacgc tttttgcttt ccatattttc
    14161 atttttatgc caaggttctg gcaccatcat cataaaagct tcttctaaag tgcgaccatt
    14221 tagagctaaa aattctaaag tattatcaaa cattgcagaa tcactgctag gcttagctat
    14281 gatgggaaaa atttcatcta aattttcaaa atactcactt tgcatcaagc cttctctagc
    14341 tcttatgcta tcaacatttc cgcgtatggt attaatctct ccattatgca ccatataacg
    14401 gtttggatgg gctctttccc aacttgggaa ggtgttagtc gaaaagcgag aatgcaccaa
    14461 agcgatggct gatttcatat tgacatcttt aaaatcaaga taaaaatcgc tcaattgagt
    14521 tgaaagaagc attcctttat aaactatggt gcgtgaagaa aaacttgaaa aataaaattt
    14581 tggcacatta atagctcttt tttctataag gcgacgcgta ctataaagca ctctttcaaa
    14641 ctcaagtcct gcacttattt tacttggttt tttcacaaag gcttgtaaaa aataaggcat
    14701 agcttttaaa gcacttgcac ctatatcgct aggattaaaa ggcacttctc taaaacctaa
    14761 aaattcaagt tttttatcct ttaaaccttg taaaaatatc tcttttgctt cttcttttgc
    14821 atcagtattg ggtgataaaa acatctgtgc tacggcataa tcaccctttt taggaagttc
    14881 aaaacccaat tcttgagttt taaaaaaatc atgtggaatt tggatcaaaa tccccgcccc
    14941 atcacctgaa ttttcttcag ctcctgcacc acctcggtgt tcaagattca tcaaaatttc
    15001 taaagcatca caaataacct tataagaggc aataccgcgt atattagcaa ctgcagcgat
    15061 accacaggca tcgtgttcgt tctttgggtg atataaacct atgctttgat tattttctag
    15121 gatattttct aaatccattt tgctctcctt aataagactg atttaaattt tgttagcttt
    15181 ataaggatta tagcatacat ttttttaaaa tcgatataat ttttatctta aaaataaata
    15241 aattaaaaaa tattttgata gatttgtaaa aattataaaa acatggcgat aatactacct
    15301 aaaatcaata atgggccatt atagaaaata aaagttggta tgcaagtatc tttaatgtga
    15361 tcgtgttgtt tatcagcatt taatcctaca gtagttccca tggttgtttc actagctgga
    15421 cttcctgcat ctcctaaagc tcctgctact cctaagataa atataataag tgctgtacta
    15481 aaaccaagtt ccaaacaaat aggacaaaaa agcgtagcta tgataggtat agttccaaaa
    15541 gaagtaccta tacccatagt gatgataagt cctattaaaa gcatgaaaaa tactgctaaa
    15601 aatttacttt gctccatcca aggaacgact gaatttacaa gatctactac tgatccactt
    15661 tcttttaaaa cttctccata tcctgcagca acaaggataa caaaagctat aaaacccatc
    15721 attttaagcc catcatcaaa aacttcattg acttttgaaa attcaactcc acccaaaata
    15781 accattaaaa caaaacccaa aagccctgat aaaggcaaat tcatagtcaa aatttgcaaa
    15841 attaaagtta aaacaagccc agctaaaacg ccccattcct tacgcgtcat ttcaagattt
    15901 tctaaatcca ctttagcaat ttctacttct tgatactctc ttggcttacg ataaaacaca
    15961 aaaagcgcta gaaaaagtcc tgctatcata caaatagcag caaaatacat agtatttgta
    16021 acatcattta aagatacact tacattattt gcatttaaat tatcttttaa aagatcttga
    16081 aaagtaagcc caaaacctac tggcaaaacc atataaggcg tagtaaggcc aaaagttaaa
    16141 gcacaagcaa ccgctctacg atcaatttta agtttattaa aaagacttaa aagaggtgga
    16201 atcaacaaag gtataaaagc tacatgaata ggaattaaat tttgagaaaa acaagaaatc
    16261 aaagctatag acaaaagcaa taaatatttt ttatgagata taaaatgact tactatcttg
    16321 atcaaatatg cagttaaatt tgtctttgaa atcgctgcag caatggctcc taagagtata
    16381 tagctaagag ctgtttttaa attttctttc attccgctta taagtatatt catagtatct
    16441 acgagttcaa gatgagaaaa tacacctgca acaagagctg agatcaaaag actcaaaagc
    16501 acattaaaac gaaacaaaca aagtaaagtc atcaaaacaa cactgataat gataggatta
    16561 gtaagtaaag tcaaaatcat tccttaaata attttaaaaa tttaattgta gaaaaaactt
    16621 agttaaaatg taataaaact cgaacatata atgattttat tttaatatgc aaaattataa
    16681 aaat
//
LOCUS       DAEDTT010000027        16678 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.027, whole genome shotgun sequence.
ACCESSION   DAEDTT010000027 DAEDTT010000000
VERSION     DAEDTT010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16678
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.027"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..654
                     /locus_tag="KLC54_000647"
     CDS             <1..654
                     /locus_tag="KLC54_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177040.1"
                     /translation="KQILDTDKEKLKQENKQAKIEALKKEISKQQKILERERAVKKEL
                     QSNKSNKNKYLNTAREYLSIGKNSRLEPELSTENMKVYILDGKFLSQYRINLLKDMLS
                     VIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSPYLNNPKE
                     LNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEIIEISSIK"
     gene            677..3289
                     /locus_tag="KLC54_000648"
     CDS             677..3289
                     /locus_tag="KLC54_000648"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HBD9177041.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREKFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYTKFVGKEVILPISKKAIKIIADEHVEKEFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFNEKGILNEHCLEFQGLERLEAREKIVAKLESLGFIEKIEEH
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSENDLEDFYPNSLLITGFDILFFWVARMMFQSTNALHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVGIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIMMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            3294..4304
                     /locus_tag="KLC54_000649"
     CDS             3294..4304
                     /locus_tag="KLC54_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HBD9177042.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRVLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGAIDELFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            4301..5212
                     /locus_tag="KLC54_000650"
     CDS             4301..5212
                     /locus_tag="KLC54_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD9177043.1"
                     /translation="MNEENISIISAFFSRISQFFNEFSWQDIKEVSLSSITSFSENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGISIVINI
                     NNDENFFWQVIVFILFLGSLLYKGFEK"
     gene            5404..6177
                     /locus_tag="KLC54_000651"
     CDS             5404..6177
                     /locus_tag="KLC54_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HBD9177044.1"
                     /translation="MKIKSLFIVSILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGVKIAIPNDPTNESRALDIIAKKGLVKFKDKALKTPLDIID
                     NPKKIKFVELKPAQLPRALDDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALTQALQSDKIKQFIIEKYNGSVLPAF"
     gene            6226..6996
                     /locus_tag="KLC54_000652"
     CDS             6226..6996
                     /locus_tag="KLC54_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HBD9177045.1"
                     /translation="MNLFKIIILACILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     HSEDKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            7006..7782
                     /locus_tag="KLC54_000653"
     CDS             7006..7782
                     /locus_tag="KLC54_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HBD9177046.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTNLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAVITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATIKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIPTF"
     gene            7866..8528
                     /gene="flgA"
                     /locus_tag="KLC54_000654"
     CDS             7866..8528
                     /gene="flgA"
                     /locus_tag="KLC54_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HBD9177047.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERTIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKT
                     TALIRRNDPIIGVLSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            8525..9088
                     /locus_tag="KLC54_000655"
     CDS             8525..9088
                     /locus_tag="KLC54_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HBD9177048.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLSFKAE
                     NEVNLEEICQENFKYTHFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIVGKWLDLLEIKHNLYEKWQNF"
     gene            9128..9604
                     /gene="coaD"
                     /locus_tag="KLC54_000656"
     CDS             9128..9604
                     /gene="coaD"
                     /locus_tag="KLC54_000656"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HBD9177049.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            9595..10173
                     /locus_tag="KLC54_000657"
     CDS             9595..10173
                     /locus_tag="KLC54_000657"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HBD9177050.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPISKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDL
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISIEILTLDAKESKEKLHQQIKEFLQ"
     gene            10170..11396
                     /locus_tag="KLC54_000658"
     CDS             10170..11396
                     /locus_tag="KLC54_000658"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HBD9177051.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKTCEEVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYHGSMFRYERPQKGRLREFHQFGVESFGNASVYEDASIILMLVEIFSRLDIKFKLL
                     INSLGCLKCMPKYRENLIHFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQSLLNDAP
                     LLNQNLCSSCQKDFEILQSVLKENGVDFEVDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLDGKSGFGVGFAMGIERIIAILEQKEEKVQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEHKVLLSYEARKLAKHLENADKNNAEIFLCMGENEAQNESLFYKNLV
                     KKEEKMIKISDLKKVL"
     gene            11393..13228
                     /gene="speA"
                     /locus_tag="KLC54_000659"
     CDS             11393..13228
                     /gene="speA"
                     /locus_tag="KLC54_000659"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HBD9177052.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINHEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSI
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDALEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            13229..13867
                     /gene="cysE"
                     /locus_tag="KLC54_000660"
     CDS             13229..13867
                     /gene="cysE"
                     /locus_tag="KLC54_000660"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HBD9177053.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRVFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGAKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
     gene            14040..15209
                     /locus_tag="KLC54_000661"
     CDS             14040..15209
                     /locus_tag="KLC54_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HBD9177054.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QIIKNAAISAIEKGCGKYTAVAGIPEVLKAIQIKFKKDNNLDYETSEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFVEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSEDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDKDIEKMRQAFEKRRNLALDILKQIPNISVYKPEGAFYLFVNIQKIEK
                     DSMNFCQKLLEQEKVAVVPGVGFGMDGYFRLSYATSDELIKKGLERIANFIKNYK"
     gene            complement(15259..15600)
                     /locus_tag="KLC54_000662"
     CDS             complement(15259..15600)
                     /locus_tag="KLC54_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HBD9177055.1"
                     /translation="MKIIQWNRAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNVLDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
     gene            complement(15670..16674)
                     /locus_tag="KLC54_000663"
     CDS             complement(15670..16674)
                     /locus_tag="KLC54_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HBD9177056.1"
                     /translation="MFDISNTQRSKAKKVQGKKYEIFLNENEHSLITPKVSFKEILRY
                     YYLYPKNAIPSFKLPFFKPDLSGFSTPHITWLGHSSLFISFKEYKILIDPIFNTHASP
                     ISFINKAFKNAPVYNINDFNEIFAVIITHSHFDHLDAKSVKALKDKAKFFITPLKVGN
                     YLKSYGVSEKKIIELDWWSGVEFGDLKIMATPAQHSSSRGDGKNKTLWASFVMEFLSV
                     DKRVFFSADGGYFTHFKKIGEYFGSFDLACLESGQFNIAWPYSHSFPEQILKEAKDLN
                     AKAVMPIHWGRFLAGTHAWNEVVKFLYENLDLPLITPKMGEAYEVGAKFKQDFWWKEE
                     "
BASE COUNT         6316 a         2401 c         2742 g         5219 t
ORIGIN      
        1 aagcaaattt tagatacgga taaagaaaaa ttaaaacaag aaaataaaca agccaaaata
       61 gaagctctta aaaaagaaat cagcaaacaa caaaagatct tagaaagaga aagagctgta
      121 aaaaaagaac ttcaatcaaa caaatcaaac aaaaataaat atctaaatac cgctagagaa
      181 tatctaagca taggaaaaaa cagtcgttta gaacctgagc ttagcacaga aaatatgaaa
      241 gtttacattt tagatggaaa atttttaagc caatacagaa tcaatctgtt aaaagatatg
      301 ctaagcgtta tacaagataa tgcaaaagat tattatctaa gtatttttgt taaaatgcta
      361 ccaaaagggg aaatgaaatt aactatctat aacaaagaaa ttatcttttc agatatgaaa
      421 aaagcttata aatatattag tttagataga ttaagcccat atttaaacaa tccaaaagaa
      481 ttaaatgaac atgtagcacg tgaagaaatt ttagaaagac ttaaacttca aattaaaaaa
      541 gacggcaaag gaagtgattt ttctaaacat atcaaaagtt tgaaaactgg acttaataca
      601 gcacaatatt tcttcccgtt ttgtgaaatt atagaaatta gctctattaa ataagctaaa
      661 acaataaagg caaataatgt atgataaaaa tttagaaaaa gagtattatc aaatttgcga
      721 agaacgcgga tattttgaaa tcgatggcaa taaaaccata caagaaaaag ataaaaattt
      781 ctgcattatg atgcctcctc ctaatgtcac tggagtttta cacataggac atgctttaac
      841 cttcactcta caagacatta tgacgcgtta taaaagaatg gatggttata aggttcttta
      901 tcaaccagga cttgatcacg caggtattgc cactcaaaat gttgtagaaa aacaactcct
      961 tgctcaaggc attaaaaaag aagaactagg tagagaaaaa tttatagaaa aagtatggga
     1021 gtggaaagag caaagcggtg gaaaaatttt agaccaaatg agaacactag gcatcactcc
     1081 tgcatggagt cgcttgcgtt ttactatgga tgaaggtttg gttaatgccg taaaaaaagc
     1141 ctttgtagaa ctttatgata aaagacttat tgtacgcgga aactatatga tcaattggtg
     1201 tactcacgat ggcgctttaa gtgatataga agttgaatac aaagaaaaca aaggaaaact
     1261 ttatcatatt aaatactttt taaaagatag cgatgaattt ttagtagtag ccacaacgcg
     1321 tcctgaaact ttttttggcg atactgcagt tatggtacat cctgatgatg aacgctatac
     1381 taaatttgtg ggtaaagaag tgattttgcc tataagcaaa aaagccatta aaatcatagc
     1441 cgatgaacat gtagaaaaag aatttggaac aggagttgta aaagttactc ccgctcatga
     1501 catgaacgat tatgaagtag gacttagaca taatttagat tttataagtg tttttaatga
     1561 aaaaggaatt ttaaacgagc attgtttaga gtttcaaggt ttagaacgct tagaagcaag
     1621 agaaaaaatc gtagccaaac ttgaaagtct tggctttata gaaaaaatag aagagcataa
     1681 caatcaaata ggatattgtt atcgttgcaa caatatagtt gaaccttata tctccaagca
     1741 atggtttgta aaaaaagaaa tcgcccaaga aagtatagaa aaagttgcac ttggcgaaag
     1801 taaattttac ccaaatcact ggataaatag ctttaatgct tggatgaaag atttaagaga
     1861 ttggtgtatt tcaagacaac tttggtgggg gcatcaaatt cctgtgtatt attgcgaatg
     1921 ctctcatgaa tgggcaagcc aacatacgcc taaaacttgt ccaaaatgtc aaagtcaaaa
     1981 tttcaaacaa gatgaagatg tacttgatac ttggttttct tcaggacttt gggctatgag
     2041 tactctaggc tggggaaatg aaaattgggg caaagataaa atttggtctg aaaatgattt
     2101 agaagatttt tatcccaatt ctttactcat tacaggtttt gatattttat ttttctgggt
     2161 ggctagaatg atgtttcaaa gcactaatgc tttacatcaa ctgcctttta aagatattta
     2221 tttacatgct cttgtgaaag atgagcaagg tagaaaaatg agtaaaagtc ttggaaatgt
     2281 catcgatcca aatgaaagta ttaaagaata tagtgctgat attttacgct ttactttagc
     2341 acttcttgct atacaaggac gagatattaa acttagcaat gataaacttt tacaagttag
     2401 aaattttaca aataaaattt ataatgctac aaattatctg cttttaaatg aaagtaaatt
     2461 tgaagatttg gaaaatatca cacttcattc agaattagca aaatatatct atgccaaatt
     2521 tcaaacttgt gttaaggatg taagagaaaa tttagacaat tatcgcttta atgatgcagc
     2581 taatactcta tataaattct tttgggatga tttttgcgat tggggtatag agcttagcaa
     2641 agccgaaaaa tcaagcgtta aagaacttgg tagtattttc aaagaagctt taaaactttt
     2701 aaatcctttc atgcctttta tcagcgagta tttataccac aaactaagcg atacagaact
     2761 taaaacaagc ccttctatta tgataagcaa atatccaaaa tttaaagaac aagataaaaa
     2821 tatagaaaaa atcttttctt tgctcataga aagcatagtt ggtatccgcc gtgctaaaag
     2881 tttaatcgat cttggaaatt ctaaaataga aaaagcttat atcaaattta acgataaaaa
     2941 aatcaaagat gaaatcaaag cttatatgaa ttttatcatg atgctcgcaa agtgcgagca
     3001 aatagaattt agtgaagaaa aattaccaaa ggcaatatgt gatgttagcg agaatttaga
     3061 aatttttatt acgcttgaaa atgttgattt aagtggtatt ttaacaagac ttgaaaatca
     3121 aaaaaataag cttgaaaaag aaagtttcaa gcttaactcc atgctttcaa atgaaaaatt
     3181 catcgctaac gcacctaaag aggtggttga gcaaaataaa gaagctctag aaaatttaaa
     3241 aattcaactt gaaaaaatat cagttgaact tcaaaatcta agaggttaaa aatttgataa
     3301 aaataaaaaa tttaaaaaaa tattatggca aggaactcgt gataaacgat gtttctttgg
     3361 agattaaaaa gggtgaaatt tacgccatag taggtcatag tggagctgga aaatccactc
     3421 ttttaagatg tattaatgga cttgagaatt atcaagaagg aagtttaaaa gtctttgatc
     3481 aagaaattaa agatttaagt caaaaaaaat caaaagagct aagagtgctt agaaaagata
     3541 tagggatgat ctttcaaaat tttgccctaa tggaacgcaa aaatgtattt gaaaatgttg
     3601 ctatgccttt aagaacacac tatactcagt gtaaatttca tgccaagctt tttaataaag
     3661 aatacatgag cgaaaaagaa attgcccaaa aagtcaattc cttacttgaa atcgtagggc
     3721 ttgatcataa aaataaatcc tatccaagag aactgagcgg ggggcaaaaa caacgcgttg
     3781 ctattgctag agccttagct ttaaacccaa aaattttact tagtgatgaa gctacttcgg
     3841 ctcttgatcc aaacactaca aaaaatattt tagagcttat atctaaaatc aatgctgaat
     3901 ttgggattac tgttgtttta gtaactcacg aaatggatgt agtaaaagac atagctcaaa
     3961 aagctttatt acttgaacat ggacaaatca taggaagtgg agcaattgat gagctttttt
     4021 taaggcctaa tgccaaaatg aaagaatttt taggagaaag cgacttcttg cctgagcacg
     4081 gacttaatat caaactttac tttccaaaag aagttgccca aaatagtgtc atcactcata
     4141 tggcaagaac tctaaatata gactttaaca tagtttgggg taaaatagaa aaacttaatg
     4201 gaaaagcctt gggaaattta gttataaata taaatgaaaa ggataaagac aaggttcttg
     4261 attacataga aaaaagtgga gtattatggg aggtggcatc atgaatgaag aaaacatctc
     4321 tatcatcagt gcttttttta gtagaatttc tcaatttttt aatgaatttt cttggcagga
     4381 tattaaagaa gtgagtttaa gttctattac aagtttcagt gaaaattatg aaaacatttt
     4441 aaaacctgcg cttaatgaaa caatttatat gagtttaatg gctgtactat ttggattttt
     4501 attggctatc attcctggaa ttttacttgc tatttgggat aaaaacggaa ttaaagaaaa
     4561 taaaatcgct tatagcattt tagattttat tacaaatata ctgcgtgcct ttccattttt
     4621 aattcttata gttgttcttt taccactttc taaaatcata gtaggcacaa gcataggtac
     4681 aaatgctgcc atagttcctt tagctatcgg aatagctcct tatttggcaa agatgcttga
     4741 aagcgctttt aaagaaatag acaaaggaat catagaagca gcaaaaagtt atggtgctag
     4801 caatattcaa attatcttca aggttatctt tagtgaggcc cttcctgcta taattagcgg
     4861 aattactcta actttgatct ttaccattgg tttttctgct cttgctggaa ctgtcggtgg
     4921 tggaggtttg ggagatgtcg ctattcgcta tggttatgaa agatttaaca aagaagttat
     4981 gattcaaact gtagttattt tacttatatt agttcagtta gttcaaattc taggtaattt
     5041 attttatact tgggctaaaa atagtaaaac tacatatatt attgccactc tattgatttt
     5101 acttggaatt agcatagtta tcaatataaa caatgatgaa aatttctttt ggcaagtaat
     5161 tgtttttatc ttatttttgg gaagtttgct ttataaaggt ttcgaaaaat aaggagatta
     5221 tatctccttt taagataaat ataagttttt ttaagtaaaa tttaaacaaa aaattaaagg
     5281 aattaaaatg atgtatcaga tgcgttaatc tgactatcaa caagttttta tatgcttctt
     5341 cctgatagtc agagtgaatt tattaagatt aaagcaagca caaaatgact aaaaaggaaa
     5401 aaaatgaaaa tcaaatcttt atttatagta agtattttaa cattaagtct taatgcaaat
     5461 gcattagaaa ccatcacagt tgcagcaact cccgtccctc atgctgaaat cctagagcaa
     5521 gtaaaacctg atttagaaaa acaaggctat aaacttgaaa tcaaagaatt tacagattat
     5581 gttttaccta atctagctgt tgataacgga gaagccgatg caaatttttt ccaacatact
     5641 ccttatttgg aagaatttaa taaaaacaaa ggcaccaaac ttatcaaagt agccgccata
     5701 cacatagaac ctatggctgt ttactccaag aaatataaaa gtctagatga tattaaagaa
     5761 ggggttaaaa tcgccattcc aaatgatcca accaatgaaa gtagagcttt agatattatt
     5821 gcaaaaaaag gtttggtaaa atttaaagat aaggctttaa aaacacctct tgatattata
     5881 gacaatccta aaaaaattaa atttgtagaa ttaaagcccg cacaacttcc aagagcttta
     5941 gatgatgttg attttgctgt aattaattcc aactacgctc tctctgcaaa tctaaatcct
     6001 gcaaaagata gcgtatttat cgaagataaa gaaagcccgt atgcaaacat tcttgttgta
     6061 agagtgggac atgaaaacga tccaaaaatc aaagccttaa cccaagctct acaaagtgat
     6121 aaaatcaaac aatttatcat agaaaaatac aacggatctg ttttacctgc tttttaattt
     6181 tgtcccttac ctggggactt ttttcttaaa tacaaaggag tttttatgaa tttatttaaa
     6241 attattatac tcgcttgcat tctaaattta tctagtctat ttgcacaaaa cattactata
     6301 ggagccactc caaatccttt tggtagctta ctagaactaa tgaaagatga ttttaaaaac
     6361 aaagggtatg agcttaaaat agtagaattt tcagactata ttttgcccaa tcgtgcatta
     6421 gaggaaaaag aacttgatgc aaatttatat caacacaaac cttttttaga agaatacaac
     6481 ctaaagaaag gttcaaattt aattgcaaca acgcctgtac ttatagctcc agtaggagtt
     6541 tatagtaaaa aaatcaaaaa tttagaaaat cttaaagaag gtgctagagt tgctatacct
     6601 aatgatgcca ccaatgaaag tagagcttta gagcttttag agaaagcaaa attaatagag
     6661 cttaacaaaa atactctaaa aaccccattg gacataaaca aaaatccaaa aaaacttaaa
     6721 tttatagagc ttaaagctgc acaacttcca agagctttag atgatgttga tattgctata
     6781 attaattcta atttcgcact tggagccggt ctgaatccaa gtaaagatac tatttttagg
     6841 gaagataaaa atagccctta tgtaaattat gttgtggtac actcagaaga taaaaatagc
     6901 gaaaagacca aagtaattga tgaaatttta agaagcgata aatttaaagc catcattaat
     6961 gaacattata aagatatatt aatcccagct ttttaggagt ataacatgaa tattaaaaaa
     7021 atatttttaa gtgttttatt tacaattagc cttagttttg gagcagataa aaccataatc
     7081 ataggtgcaa caccaacgcc ttatgctgaa attttaaatt tctccaaacc cttatttcaa
     7141 gaaaaaggtt ggaagttaat agttaaggaa tttaatgact ataatatacc taatatcgct
     7201 ttaaatgaaa aagatttaga tgcaaattta tatcagcata aacctttttt agatgatttt
     7261 aatacccaca aaggaacaaa tttaagttct ttaggtgcta ttgttttagt tcctatggct
     7321 atatattcta actccataaa agatataaaa gatattccta atggtgctaa aatcgctata
     7381 cctaatgatg ctaccaatga aagcagagct cttgatttac tagctaaagc aaatttaata
     7441 gagtttaaaa gtcaaagcac ccttaaaacc cctattgaca taagtaaaaa tccaaaaaaa
     7501 cttaaattta tagagcttaa agccgcacaa cttccaagag ccctaaatga tactgatttg
     7561 gctgttatta ccacaaacta tgctcttgga gcaggtttaa accctttaaa agatggtatt
     7621 tttatggaag ataaagatag tttatatgct attgttttag ctacaataaa aggtgaagaa
     7681 acaagtcaaa aaagtcttgt tattaaagaa attttaacaa gcgataaaat taaaaatttt
     7741 atcatagaaa aatataaagg ctctgttatc cctacttttt aactctatac aaagccttct
     7801 aaaggctttg ttaaacttat aaaagctaaa atactattta ttgcattata attcttagga
     7861 taaaaatgaa aattattttt ttaacttttt ttattgtgat aaattatatc caagcagcta
     7921 gtttagaaga aatcaaaaca gcactagcta aagaatttag aaataatttt cctaaaatta
     7981 taatttctca aattgattta aaaataacat cattgcctaa agattttgat caatatgaat
     8041 ttctaagaat cgctaatgga cgttttaatc aagcacaagg ctttttaagg gctgaattta
     8101 aaactccgca aaatatacaa aaaaatgtat tttttagata tttcattcaa gcaaatttag
     8161 aagttttaaa aagcgaacgc actataaaaa gaggagataa acttggagct tttgactata
     8221 aaagcgtatt gattgatttt gataaagttc ctttaaatgc cttaacctta gatgatgtag
     8281 ataatcttgt agctaaaagc aatattaaca aaaacgctat tttaagagca aatatgttta
     8341 aaaccacagc tttaatacgc cgaaatgatc ctataatcgg ggttttaagc gaagcaaatg
     8401 ttgatgtttt aatcgaactt gtggctttgc aaagtgcaaa tatgggcgaa aggattcgtg
     8461 caaaaaacaa agaaggtaaa gttatgcaag gcatcgtagt gggtaaaaat aggatgatta
     8521 tacaatgaag gttttattag gaatttctgg ttcaagcagt gtcaatttag gcttaaaatt
     8581 attaaaaaat ttagaaaatc aatgcgaact ttattgtatt ttaactcaag gtgcaaaact
     8641 tagtttcaaa gctgaaaatg aagtaaattt agaagaaatt tgtcaagaaa attttaaata
     8701 cactcatttt ttagatgata aaaatttaag tctaagtgta gcaagtggat cttttggaat
     8761 agaaaaaact atcattgctc cttgttcgat ttcaagttta gcaaaaattc acgctggttt
     8821 tgcagacact cttttaatgc gtgctgcagc agtagcccta aaagaaagaa aaaaactcat
     8881 cttaggcgta cgtgaaatgc ctttttctac tttaaattta gaacatatgt taaaacttag
     8941 ccaaatggga gttatcatcg cacctcctat tatcgcaagt tattctaaag caaacaatct
     9001 agagcaaatg gaaaatttta tcgtaggtaa atggttagat cttttagaaa taaaacacaa
     9061 tttatatgaa aaatggcaaa atttttagtt taaatttgtt atatttttaa aaaaaattgg
     9121 agcaaaaatg acttgtttat atcctgggac ttttgatcct attaccaacg ggcatttaga
     9181 tgttataaaa cgggctttaa aaatttttga tgaagtcatc gttgccatag caaaaagtga
     9241 acataaaaaa ccttgctatg atttagaaaa acgcaaagaa ctagccctgc ttgcaacaca
     9301 aaatttaaaa aatgttaaaa tcattgcttt tgataattta cttgtagatt tagccaaaga
     9361 attaaaagtt aatactataa tccgtggact tagagcagtg agtgattttg aatacgaatt
     9421 gcaaattggc tatgcaaatc acgcactttg ggaagatatg gaaaccattt atcttatgcc
     9481 aagtctaaaa catgctttta tttcaagttc tattgttcgc tctatagtag cacatggggg
     9541 cgatgtaagt tctcttgttc caaaagaaat tctacctttt ttaaaggatc aatcttgtat
     9601 gtagtttttg aaggtattga ctgcgtagga aaaagtacgc aaatttcact tttaaaagaa
     9661 atttacaaag acgccatttt tacactcgaa cctggcggaa cagaacttgg aaaacattta
     9721 agagaaattt tacttaataa aactcatcct attagcaaaa gagctgaact cttgcttttt
     9781 ttagctgatc gtgctcaaca ttttgaagaa atcttaaaaa ccaatcaaaa caaactcatt
     9841 attagcgata gaagttttat ttcaggcatg gcttatgcca aagattttga aaacgatttg
     9901 ctttttgctt taaatagttt tgctttagaa aatttttttc cacaaaaaat tatcttttta
     9961 aaaggagatg caaaccttat ccaagaacgc ctcagtcaaa aagaactaga tagcatagaa
    10021 aaacgtggca ttgagtattt tttaagtgtg caagataaac tcgaaaaagt gcttcatttt
    10081 ttaaaagaaa aaatttctat agaaatttta acacttgacg caaaagaaag taaagaaaaa
    10141 ttacaccaac aaataaagga atttttacaa tgattaacgc tttaaaagga atgaaagatt
    10201 tattagataa agatgcatat tattatgaaa aagtgattaa aacctgcgaa gaagtagcta
    10261 aaaactatgg ctttactttt atcaatacac cgcatttaga actttgcacc ctttttaaaa
    10321 gaagcgtagg agaaagttct gatatagtag gtaaagaaat gtatgaattt atcgataaag
    10381 gcgaaaatca tgtttgcatg cgtcctgaag gaactgctgg ggtggtgcgt gcctatatag
    10441 aaaaaaaact cgataaaaac actagtgtga aaagatggtt ttatcatggc tctatgttcc
    10501 gctatgaaag accccaaaag ggacgcttaa gagaatttca tcaatttggc gttgaaagtt
    10561 ttggaaatgc aagcgtttat gaagatgcaa gtattatttt aatgttagta gaaatttttt
    10621 cacgcttgga tattaaattt aaattactga ttaactcttt aggctgttta aaatgtatgc
    10681 caaaatatcg tgaaaattta atacattttt tagatagcaa agaaggtttt tgcgaggatt
    10741 gtttgcgtag aaaaaactta aatcctattc gtgttttaga ctgcaaaaat gagcattgcc
    10801 aaagcttact taacgatgct ccgcttttaa atcaaaattt atgctcatct tgtcaaaaag
    10861 actttgaaat tttacaaagc gttttaaaag aaaatggagt ggattttgaa gtggattcta
    10921 agcttgttag agggcttgat tactactcta aaacggcttt tgaattcatt agtgatgaaa
    10981 ttggtgcaaa agctgctatt gctgggggcg gaagatatga tagacttatt gaatatcttg
    11041 atggaaaaag tggttttggt gtaggttttg ccatgggcat agaaagaatt atagccattt
    11101 tagaacaaaa agaagaaaag gttcaaagag aaggaattta tctttgtgct atggatgaaa
    11161 tttatatcca aaaacttttg catatcgcta caaatttaag aaaagaacat aaagtgcttt
    11221 taagctatga agcaagaaaa ctagctaaac atctcgaaaa cgcggataaa aataatgctg
    11281 aaatttttct ttgcatggga gaaaatgaag cacaaaatga aagtttgttt tataaaaatt
    11341 tagtaaaaaa agaagaaaaa atgattaaaa tttcagactt aaagaaggtt ttatgatgga
    11401 ttatggtatt gatatttggg gaaatgaaaa tttcattatc aaaaatggta aagtttgtat
    11461 caatcacgag aaaaaacctg ctattattga tatagttaaa gaattaagag atgatggata
    11521 taagggacct ttacttttaa gatttcctca tctcatccaa aaacaaattg aaaatattta
    11581 cggaaatttc aataaagcaa gaaaggaatt tggctataaa ggaggattta acgctgttta
    11641 tcctttaaag gtaaatcaat accctggttt tgtaaaaaat cttgtaaagc ttggaaaaga
    11701 ctataactac ggacttgaag caggttctaa agcagagctt ttactcgcta tggcttataa
    11761 taacgaaggt gcacctatta ccgtaaatgg ctttaaagat agagaactta tcaacatagg
    11821 ctttatcgca gctgaaatgg gacataatat cactttaact atagaaggac ttaatgagct
    11881 tgaagctatc atagacatag ctaaagaacg ctttaaacct aaaccaaata taggcttacg
    11941 tgtgcgttta cattctgctg gagttggaat ttgggcaaaa agcggtggga ttaattctaa
    12001 atttggactt acatccactg aacttataga agcggtaaat ttactcaaag aaaacaaact
    12061 tttagaacaa tttaccatga ttcactttca tctaggctca caaattaccg aaattcatcc
    12121 cttgaaaaaa gccttaaatg aagcaggaaa tatttacaca gaacttagaa aaatgggagc
    12181 taaaaatcta aaagctatca atcttggtgg cggtttagct gtagaatact cacaatttaa
    12241 aaatgaaaaa agtagaaatt ataccttaag ggaatacgct aacgatgtag tttttatcct
    12301 aaaaaatata gctgaacaaa aaaaagattt agagcctgat attttcatag aaagtggacg
    12361 ttttgtagca gctaatcacg ctgttttaat tgctcctgta ttagaacttt tttctcaaga
    12421 atacgcagaa aacaaactca tacttaaaaa acaaaatcca aaacttatcg atgagcttta
    12481 tgatctttat aaaagcataa aaccttccaa tgcattagaa tacttgcacg atagcataga
    12541 tcatttagag agtattttaa ctctttttga tttgggctat gtggatttac aagatcgttc
    12601 caatgctgaa attttaactc atttgattac aaaaaaagcc atcttgcttt taggtgataa
    12661 gcaaaatcct gcggatttac ttgctataca agatgaagta caagaaaggt atttggtaaa
    12721 tttttcactc tttcaaagca tacccgattt ttggggctta gaacaaaatt tccctatcat
    12781 gccacttgat cgcttagatg aagaaccgac tcgaagtgca agtatttggg atataacctg
    12841 cgatagtgat ggagaaattt catactctaa agataaacct ttatttttac acgatgtaga
    12901 tgtagaaaaa gaaaattatt ttctagggtt ttttcttgta ggtgcctatc aagaagtact
    12961 tggaatgaaa cacaatcttt ttactcatcc tactgaagct attataagta tcaatgaaaa
    13021 aggctatgaa gttgagggga ttatagaagc acaatccata cttgatgcct tagaagattt
    13081 agactatgat atacacgcta tcatggatat acttaatgaa cgcataagta attctaagct
    13141 tgtaaatgac aagcaaaaaa agcatatttt aggggagctt tatcttttct taaatgataa
    13201 tggttattta aaaagcatag gagtttagat gaatttttgg ggtattataa aagaagattt
    13261 ttctcagcca aaggcacaag atccagcttt taattcttgt atagaacttt tttttaatta
    13321 ccctggagtg tgggctgtag taaattaccg ctttgcacat tttttttata taagaaattt
    13381 taaacgcatt gctagaatga ttagtggaat ttcacaattc ttaactgggg tagatttaca
    13441 ccctggcgca gaacttggaa ggcgtgtttt tatagatcac gccaatggag tggttatagg
    13501 tcaaacagca attatagaag atgatgtttt aatttatcaa ggcgttactt taggtggaac
    13561 aagcctagaa aaaggtgcta aacgccatcc aaccataaaa aaaggagtga tcataggctc
    13621 aggcgcaaaa gtacttggca atatcaccat aggagaaaat gccaaaatag gctcaaatgc
    13681 tgtagtagtt aaagatgtag gtgcaaattt aactgccgtt ggcattcctg cttatattat
    13741 cgaagagcgt aaaaataaaa acattagagc catagatgca aattgcgatg acaaactaga
    13801 aaagttagaa aagaaaattt tagaacttga aaatcttata ttaaaacaac ctgaatcaca
    13861 aaaataataa ttttttataa tacataaaat tatatgtatt attatgcgta ttaatttttc
    13921 ctaaaaaatt aatacaaatt ttcacattta ttgaaattta taactcattt ttaaattaaa
    13981 tttattgtaa aaatgcaatt ttctgctaaa attaaacaaa aattattaag gattgaaaaa
    14041 tgcttacaaa aagatctcaa gttttagaag aatctatcac tttagccatc actgcacttg
    14101 ccaatgaact taaagctaaa ggcgaagata tcattagttt ttcagcaggc gaacctgatt
    14161 ttgacacacc acaaatcatc aaaaatgccg ctataagtgc tattgaaaaa ggatgtggaa
    14221 aatacactgc tgttgcggga attcctgaag tattaaaagc tattcaaatc aaatttaaaa
    14281 aagataataa tcttgattat gaaacaagcg aaattatcac caatgtaggc gcaaaacact
    14341 ctctttttga atgtatagaa tgtttagtag aaaaagatga tgaagtgatt atccctagtc
    14401 cttactgggt aagctatcct gaaatggtaa aatttgcagg tggaaaacct gtatttgtag
    14461 aaggcttaga agaaaatggc tttaaaatta ccgctgaaca actaaaaaaa gctatcacag
    14521 ctaaaaccaa ggttttgatg ttaaattctc cttcaaatcc tgtggggtcg atttattcta
    14581 aagaagaatt aactcaaatt gcaaaagttt tagaaggaac acaaatcact gttttaagtg
    14641 atgaaatgta tgaaaaactt cgctatgatg gttttgattt tgtagctttt gcaagtgtaa
    14701 gcgaagatgc tttaaaacgc actgtgacta ttaacgggct tagtaaatgc ggggctatgc
    14761 caggatggcg ttttggctat atggcaagca aaaataaagc cctaatttca gccgttaaaa
    14821 gacttcaagg acaaagcact tcaaatattt gttccatcac tcaacatgca gccattcctg
    14881 ctttaaatgg agaatgtgat aaagatatag aaaaaatgcg tcaagccttt gaaaaacgcc
    14941 gtaacttagc cttagacata cttaaacaaa tcccaaatat cagtgtttat aaaccagaag
    15001 gtgcttttta tctttttgta aatatacaaa aaatagaaaa agattctatg aatttttgtc
    15061 aaaaattact tgaacaagaa aaagttgccg ttgttccagg tgtaggtttt ggaatggatg
    15121 gatacttcag actttcttat gccacaagcg atgagcttat caaaaaaggt ttagaaagaa
    15181 tagcaaattt cattaaaaac tataaataat tctaggttaa agcctagaat tatttaggca
    15241 aattaaaacc ttataaaatc aaggcttttt aagcacagca tttacccttt gaacactatc
    15301 tgatttattt aaactcaatc ttattataga attttctaat ccacctaaag aatgcgctac
    15361 atttgcctct aggcttatca tatctaaaac atttaattca aatttttcct tttccacttc
    15421 aaaccaaatt ttaccactta aaacttgaac atgtatagca aaaggagctt tatgctcttt
    15481 catcacacta tctttagcta ataaaatttg aatttcttta cctttttcat tgtcaattaa
    15541 aacattgatt ttcacttctt ttgggctaaa ttccgcccta ttccattgaa tgattttcac
    15601 aaaatctcct tttttagttt tataaaacta tagcaaaaac caaaatataa attataaact
    15661 tgtgttaatt tattcttctt tccaccaaaa atcctgttta aatttagctc ctacttcata
    15721 agcctcgccc atttttggtg tgataagggg taaatctaaa ttttcataaa gaaattttac
    15781 cacctcattc catgcatgag ttcctgctaa aaatctcccc caatgtatag gcatgacagc
    15841 ctttgcatta agatcttttg cctcttttaa aatttgctca ggaaaagagt gtgaatatgg
    15901 ccaagcgata ttaaattgtc cgctttcaag acaagctagg tcaaaacttc caaaatactc
    15961 acctattttt ttaaaatgtg taaaataccc tccatctgcg ctaaaaaaca ctctcttatc
    16021 tacacttaaa aattccatca caaaagaagc ccaaagggtt ttgtttttac catctcccct
    16081 acttgaactg tgctgtgcag gtgttgccat gatttttaaa tcaccaaatt ctactccact
    16141 ccaccaatca agctctatga tttttttctc gctcacccca tagcttttta gataatttcc
    16201 cacttttaaa ggagtgataa aaaatttagc cttatctttt aaagctttta cactcttagc
    16261 atctaaatga tcaaaatgcg aatgcgtgat aatcacagca aaaatttcat taaaatcatt
    16321 tatattataa acaggagcat ttttaaaagc cttgttgata aaagaaatgg gcgaagcatg
    16381 agtgttaaaa ataggatcaa tcaaaatttt atactcttta aaacttataa aaagcgaaga
    16441 atggccaagc caagtaatat gtggggtgct aaaaccactc aaatcaggct tgaaaaaagg
    16501 taacttaaaa gaagggatgg cattttttgg ataaagataa taatacctca aaatttcttt
    16561 aaaagacact ttaggagtta taagactgtg ctcattttca ttaagaaaaa tttcatattt
    16621 tttaccctgc acttttttag cttttgatcg ttgtgtattg gaaatatcaa agatttta
//
LOCUS       DAEDTT010000028        16427 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.028, whole genome shotgun sequence.
ACCESSION   DAEDTT010000028 DAEDTT010000000
VERSION     DAEDTT010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16427
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.028"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..221)
                     /locus_tag="KLC54_000664"
     CDS             complement(<1..221)
                     /locus_tag="KLC54_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HBD9177057.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKCIKTLRLRLNEKGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKIRFEKKV"
     gene            complement(197..1513)
                     /locus_tag="KLC54_000665"
     CDS             complement(197..1513)
                     /locus_tag="KLC54_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HBD9177058.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFILGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGIGLSNIFARIVAIVALFAILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQAISIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            complement(1591..2331)
                     /locus_tag="KLC54_000666"
     CDS             complement(1591..2331)
                     /locus_tag="KLC54_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HBD9177059.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            complement(2328..3416)
                     /gene="pstA"
                     /locus_tag="KLC54_000667"
     CDS             complement(2328..3416)
                     /gene="pstA"
                     /locus_tag="KLC54_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HBD9177060.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLVQKGEIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAQAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            complement(3413..4327)
                     /gene="pstC"
                     /locus_tag="KLC54_000668"
     CDS             complement(3413..4327)
                     /gene="pstC"
                     /locus_tag="KLC54_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HBD9177061.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTMNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFIITLIINMFSVYLINRFHKRKNL"
     gene            complement(4337..5332)
                     /locus_tag="KLC54_000669"
     CDS             complement(4337..5332)
                     /locus_tag="KLC54_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HBD9177062.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGVTDIVGIMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     EFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            5511..6014
                     /gene="ctf"
                     /locus_tag="KLC54_000670"
     CDS             5511..6014
                     /gene="ctf"
                     /locus_tag="KLC54_000670"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HBD9177063.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            6057..7433
                     /locus_tag="KLC54_000671"
     CDS             6057..7433
                     /locus_tag="KLC54_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HBD9177064.1"
                     /translation="MTYFSLEFSILMIAFFAIYWTFKNDYKIQNILILIFSYIIYILI
                     NPYFALVLFIYTFFIHYFALLIFVRRKRYIFATCMAFIILNLCFFKYFPSIKGSVDEI
                     LNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSG
                     PIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNF
                     IQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPPNFNMPYLAKNLKDFWARWHI
                     SLSTFIRDYIYIPLGGNRKGMPRTIVNILIAFILSGMWHGNTLAFIVWGLLHGIGIVF
                     IHLLALSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNFFQIPS
                     YNDIYMLVAFGVLFMVYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGI
                     PDFIYSSF"
     gene            7434..8444
                     /locus_tag="KLC54_000672"
     CDS             7434..8444
                     /locus_tag="KLC54_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HBD9177065.1"
                     /translation="MSVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQESKSTDENLSKIDKVLNTLENDENTS
                     HKETNLTLIQDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFVKNSNIKYLVVLLGANDPWDIKKGGNYHRFGSPS
                     WIDIYTNRVDEIIKIAKKHKAKVFWFEIPPVKKEDLNKKIQVLNKIYSDEILKNKEIF
                     INTKLFFSVNDEYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            8431..9609
                     /locus_tag="KLC54_000673"
     CDS             8431..9609
                     /locus_tag="KLC54_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HBD9177066.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKIKGAKINLDTTLDKKKFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKDNNVFLDTIAINGAKSDLWLSWNQTVVKKELGLLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(9612..10982)
                     /locus_tag="KLC54_000674"
     CDS             complement(9612..10982)
                     /locus_tag="KLC54_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HBD9177067.1"
                     /translation="MRVIFSIFLAFFLSACGAKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLINYDLYPTLSGNLGFGGDKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMKELYSYKYKLGKIEELDLLNIEQSLLRAKQNLLSN
                     DQNRNLLIKNLQDLLAKQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFTYEQLLISYEQALQSAMNEFALNYKDYQSNTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDEN
                     LEFPKY"
     gene            complement(10984..12909)
                     /locus_tag="KLC54_000675"
     CDS             complement(10984..12909)
                     /locus_tag="KLC54_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD9177068.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYIFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKKLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALMNGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNAQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLTLKTMSKEKKTLTLLKNQAFECFKIAYSSILAHKLRSVLTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGRGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRLYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVVICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            complement(12909..14081)
                     /locus_tag="KLC54_000676"
     CDS             complement(12909..14081)
                     /locus_tag="KLC54_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HBD9177069.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIASKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVPNKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNENEELIVSSSADGLAPKVKLRF"
     gene            complement(14160..15350)
                     /locus_tag="KLC54_000677"
     CDS             complement(14160..15350)
                     /locus_tag="KLC54_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HBD9177070.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILATIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGSLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMAT
                     QFVNNIQSVVSRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAALIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            complement(15359..16240)
                     /gene="ppk2"
                     /locus_tag="KLC54_000678"
     CDS             complement(15359..16240)
                     /gene="ppk2"
                     /locus_tag="KLC54_000678"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HBD9177071.1"
                     /translation="MQENNSPKTQAVVKKNEIYVSVKRKKSTIEYEKDLKNLQIELLK
                     FQNHVKAKGLKVLILIEGRDAAGKGGAIKRLIEHLNPRGCRVVALEKPSDVEKTQWYF
                     QRYIAHLPSAGEIVIFDRSWYNRAGVEPVMGFCTPQQHKDFLREVPLFENMISNSDII
                     FFKFYFSVSKDEQKKRFEKRRSDPLKQYKLSPVDQKSQELWDKYTLAKYSMLLASNTP
                     TCPWTIISSDDKKKARLNLLRFILSKVEYPNKKTGDFSKIDAKLVRSGEEEIRKMEAN
                     LEKLDSKKADEKIKDLD"
BASE COUNT         5627 a         2926 c         2161 g         5713 t
ORIGIN      
        1 aaaacttttt tttcaaatct tatttttgcc tcattcatcc aagaacttga tttatctaaa
       61 aactcataaa cacttttaaa ggtgcaaaaa taaggaatac taagaacaaa ttcacccttt
      121 tcatttagcc ttaatcttaa agtttttatg cattttttag aataaaaata gcactcatct
      181 ttataaataa atgattttaa actagagctt tgccttgcca ttttttactt ttccatctgt
      241 atgaatttac cattccacgc aaaaactcat ctgcacaaaa tcctatccaa acccctaaaa
      301 ttccaagatt aaaatgaaaa caaagcacat aacccacagg caaagatacc cccatcataa
      361 aaacaagtcc gctaaaaaat ggaaacttag catcgccact tgcgcgcaag gaattaacca
      421 taactatatt aaaagttcgt gaaatttcaa gaaagattga aagagcaaat aaaggtatca
      481 ttaaattttt tagctcttct ttaagcccta aaatttgcat agtaaaatct tgacaaagat
      541 agtttaaaaa cgccactaaa gcactcgcta ttacactaaa atataaagca cgccaagcat
      601 gtttataagc gatattttca tatctagcac cgactaattt acctactatg atttcattag
      661 ctatgcttat agcttgtcct ataagcatga taagcattga aatttgaaaa taaatcgttt
      721 gcacactcaa actcgcctca cctaagcttg ctacaaaagc aaaagctata gtgtattgga
      781 ctatccacaa aagattttcc cctgctgaaa atcctcctat atttaaaacc ttttttaaaa
      841 cttctttttc aagttttatc atttctttga ttttaagatg aattttaagt ttataaaaaa
      901 gtatcgcaaa caaagcaact atagcaacaa tgcgagcaaa aatattacta agccctattc
      961 caaaaagttc tgactttgta taatgcaaaa cataataatt tccacaaatc accactatat
     1021 ccatcaaaaa acctataaac atgacccaat aagccatatt ataaaccctt acaatagcag
     1081 ctaaaacaat acctatggca tcaaaaaaca aacaaattgc aagcatatgt aagtaaattt
     1141 cgctatcttt gagcaattct tgtggaattt ttaaaagata aagcaaatac tccccatgcc
     1201 ataaaataag cacaccgcat acaaagccta aaagtgcatt taagaacaaa ctttgatgaa
     1261 tcacttttct tgctaaaaca tgatcttttg caccaatagc ttgtgcgatc accacactac
     1321 aacccacact taaaaatgaa aaaatagtga taaaaagatc taaaatttga tttccagccc
     1381 ccatagcacc gagaataaaa ttagaataat gcgacaccat agcggtattg ataatcacag
     1441 ttaaatactt agaaagcaaa tcccaaaata taggaaaact aagtcttgtt aaagagagtt
     1501 gtttttttgc catgattaat gccttaaaag ataaaaggca aattttaaca aatttttctt
     1561 aaaataaaac cgctaaaaat agcggtttta ttatccaaaa gcaccgctta agtaagcctt
     1621 ggttttttct tgttttggat tttcaaaaaa ttctttactt tcaccaaatt ctataagctc
     1681 gcctagatga aaaaatgcag tataatcagc cacgcgttta ccttgttgca tattatgcgt
     1741 aaccatgatc atagaaagat tatgacttaa ttcttttaaa agctcttcta taacacctga
     1801 gctaatagga tcaagtgcgg aagttggctc atctaaaagc aagagcttag gttttattgc
     1861 taaagctctt gcaatacaaa ggcgttgctg ttgtccgcct gaaagagcta gggcattttg
     1921 ctttaattta tctttaacct cttcaaaaag ccctactttt tgcaaacaat ccaccaccaa
     1981 agcttcttct tcatctttgt ttttaatcat accatgaagt tttggtgcat aagagatgtt
     2041 ttcataaatg ctttttacga aaacattagg ttgttgaaaa accatgccta catttttacg
     2101 caaggctact acatcttgat ttttaacatc ttttccttca atttccacta aaccatcgat
     2161 ttttgcgatt ttatcattca ttctgttaaa acaacgcaaa aaagtggatt taccacatcc
     2221 agaagcaccg atgagtgcgg taattttgtt ttgttctatt tgcatattga tatcaaataa
     2281 agcttgtttt tttccataaa ataaatttaa atttgttgtt tttgctatca ctttaatttt
     2341 ccttgaaaat attttcttaa taatatcgca ctaagattta acacgactaa aagtcctaaa
     2401 agcacaataa tacccgctgc tgttctttct aaaaatgcac gctctggcat agccgaccat
     2461 gagtaaattt gagcaggtaa aacgctagtt ggatcaaaaa tagaactagc tacatcaggg
     2521 ataaaggcta tcataccgat aatcatcaaa ggtgcagtct ctcctatagc ttgcgctaaa
     2581 gtcaaaatag aacctgttaa aatcataggc atagccaaag gcaacataat gccttttacc
     2641 atttgaacct ttgtcatgcc taaggcataa gcggcgtttt tcatgttaat gtccacactt
     2701 tttaaagccg ctttggttga aacaatgata ataggtaaac tcatgatcgc caaagtaagc
     2761 ccacccacta aagcacttga gcgaggcatt ccaaaaagat tgataaacac tccaagtcct
     2821 aaaagtccaa acaagatact tggaatactt gcaaggttgt taatacacac ttctataaaa
     2881 tgtgtaagga tattttgtgg cgcaaattct tctaagtaaa ttgccgctgc aacgcctata
     2941 ggaacactca caaccataca gacaagcata acaagcaaag tccctacaac tgaagataaa
     3001 attcctgaat tttcaggaga ttttgagtcc ccatttaaaa agaaattgct attaaattta
     3061 agctctatct cgcctttttg cacaagatca tctactaaag ttctttgttt ttcactaagg
     3121 cgattatatt tttgcttcat atattgatct acttctgaat ttgccaaaag ccaagatttt
     3181 tcagtgattt gccctgttct tatttttctt tgttctgcgc gagataaaag atcataagca
     3241 ggagaatttc tattagcctc tacaaaaata taggtttgct taaaagcagg aaatccaaga
     3301 taagccacac ttcctaaaaa gatacaaaga aaaattaaat taatataaag ccccatttta
     3361 caaagtcttt taaaagactt tgaagctttt tgtctttttt taaaaagttt tttcataaat
     3421 ttttcctttt gtgaaagcga ttgatgagat aaacgctaaa catattgatg attaaagtga
     3481 tgataaaaag caccaaacct aaagaaaaag cactcaaagc caaagaacta tcaaaagctt
     3541 gatctccact taaagcttct acgattttta ccgttactgt tgtcatatct tctaaaaaat
     3601 tcatcgttaa atttggacgc aaagaagctg ccattaccac tatcatagtt tcgcctaagg
     3661 ctcttgaaag tcctaaaaga caagctgcaa ctataccagg aatagcctca ggtaaaatca
     3721 cagcaaaaac cacttctttt tttgtcatac ctaaagcata agcgccatta atccttttct
     3781 cgcttactgc ttcaatacaa tcttgagata acgaagccac tataggtact atcatgatcc
     3841 ccatgataaa acctgcgcct aaagcacttt gaaaacttgc ttgtatgcca aataaagaaa
     3901 aaaaccacac tataaaaggc gctacaacta tagccgcaaa aaatccaaaa acaacagtag
     3961 gaatccctgc aatgatttct aaaataggtt ttaagtaatt tttagatttt ttgccagcaa
     4021 aaacacctaa atatatagca cacataaccc ctaaaggtaa agccgttagc atagcaatca
     4081 atgaaatata aaaagttccc caaaaaagcg atagcgctcc aaaaacacct tgtttgctcg
     4141 tgccatctgc attcataaaa gctgcatcag ctgcccactg acttgagaat aaaaaggtaa
     4201 caacactttc tttttgaaag aattttaaag cttcaattaa aattgtaagc atgatagcaa
     4261 agcttactat cacgcttaca aaagcacata aaaaaagtgc aaatttgatt attttttctt
     4321 ttagcaaagt ttttccttaa aaaacttttc cagcttttac aagctcatca tttaaaattt
     4381 ttctatcttc tacatgtttt tgagaagctt ttaatttatc atcacttaaa ggaacaagtc
     4441 ctattttttc aagctctcca ccactttttg ccaaatcatc actcatataa atttttgcaa
     4501 attcaaaggc ttcttttgga tttttcttag cattgatata aataaacaaa cttcttgcaa
     4561 gttcgtattt ttcatctgcg atgctttctt cgcttggcgt aacaccatcg atattagcag
     4621 cattgatttt gtctgaattg ctcaccaaaa agctataacc aaaaattcca aaagcatctt
     4681 tatcaatagt aagttttgaa acaattagat tgtcattttc gccacttggg atataagcac
     4741 catcttggcg tatggtttta tactcgcctt tatactcagg aattttttta gacacatcac
     4801 tcattacaag ctcttctata gtatctcttg ttcctgaact tgatggtgga ccataaacac
     4861 taattttacg atttggtaaa tttttattga tttgattcca gtttgtataa ggatttggta
     4921 taagttttcc attttgtgga atttcttttg ctaatgctaa gaaaagttct ttttttgtga
     4981 tatttaatgg agcattggtt ttattttgag ctaaaactat accatcataa cctatcataa
     5041 tccctactat atcagttacc cctgcttttt tgcaagtttc aaattcgctt aatttcatag
     5101 gtcttgaagc attagaaata tcagtagttc cttcgcaaaa taccttaaat ccaccccctg
     5161 ttcccaagct ctctactata ggagtttttg tatttttaat cgaagcatat tcttcagcta
     5221 caaaagaagt aaaaggatac acagtcgatg aacctgcgat ttttaaatct gctgcattta
     5281 aagcaccaca aagtgcaaga cttgccacac ttaaagatag aatttttttc attttttctc
     5341 cttaacttta aaaaagtaat ggaagtttaa aaaaacttgg aaacattttg gaaacatttt
     5401 ttattttgtg tttttcttaa atataatttt taactatcaa aaatttagct tgtttttaaa
     5461 aaaataatat atcattataa aacattttaa attttaataa ggagataaga atgctttcta
     5521 aagaagttgt aaaattactc aatgaacaaa taaacaaaga aatgtatgca gcaaacttat
     5581 atcttagtat gagttcttgg tgctatgaaa acagtcttga tggagctgga gccttcttgt
     5641 ttgcacatgc aagcgaagaa agcgatcatg ctaaaaagct tatcacttat cttaatgaga
     5701 cagattctca tgtagagctt caagaagtaa aacagcctga acaaaatttc aaatctttac
     5761 ttgatgtttt tgaaaaaacc tatgaacatg agcaatttat cacaaaatca atcaatactt
     5821 tagttgaaca catgctaaca cataaagact attctacttt taatttctta caatggtatg
     5881 taagcgaaca acacgaagaa gaagcacttt tccgcggtat agttgacaag attaagttaa
     5941 tcggagaaca tggaaatgga ctttatttag ctgatcaata catcaaaaat attgcattaa
     6001 gcagaaaaaa ataatctttg ccctactatg ggcaaatctc gctttggatt gaaggtatga
     6061 cttatttttc tctagaattt agtattttaa tgatagcttt ttttgctatt tattggactt
     6121 ttaaaaatga ttacaaaata caaaatattt taattttaat tttctcttat attatttata
     6181 ttttaatcaa tccttatttc gccttggttt tatttatata tacctttttt atacactatt
     6241 ttgccttgct aatttttgtg cgtcgcaagc gttatatttt cgctacttgc atggctttta
     6301 ttattttaaa tttatgtttt tttaaatact ttcctagcat caaaggaagt gttgatgaga
     6361 tattaaattt tttcggttta gaatttttaa atattgattt agtattacca ataggaatta
     6421 gtttttatac ctttacttct atcacttatc ttgtagaagt ttatcaaaaa cgccgtttag
     6481 aaagtttttt aaatttagca accttcttat cattttttcc aacactactt tcagggccta
     6541 ttatgcgaag ttcttttttc tttgagcaag cctatcaaaa acgcgaattt aaacatgcaa
     6601 atttaatcat catcttgctt gtttttggta tagttaaaaa agttttaata gccaattacc
     6661 ttggaattta tgctaaaagt attttagact ttccacaatc ttataatttc atacaacttt
     6721 taagtgcaat ttacgcctat gcgattcaaa tatactgcga ttttagcgga tatgttgact
     6781 tagtttgtgc ttttgcttta atgctaggtt ttacccttcc gcctaacttt aacatgcctt
     6841 atcttgcaaa aaacctaaaa gatttttggg ctagatggca tatcagtctt tcaaccttta
     6901 taagagatta tatctatata cctttagggg gcaatagaaa aggaatgcca cgcactatag
     6961 ttaacatact catcgctttt atactttcag gtatgtggca tggcaataca cttgctttta
     7021 ttgtttgggg tttattgcat ggtattggca tagtttttat acatttgcta gctttaagca
     7081 aatttagttt acaaaaaatt ccagctttag gaagattttt aacctttcaa tttgtatgtt
     7141 ttacttggat tttcttttac tatagcaaaa atctagaaga tgcaatagaa tattttaaag
     7201 cttgttatta taatttcttc caaattccat cttataatga tatttatatg ttggttgctt
     7261 ttggggttct ttttatggtc tatcctttat ttattaattt taaagaatat tgcattaaga
     7321 ttttaaacct tactccattt ttgctaaaac cttttattat agcttttatt ttacttttgg
     7381 tttttgcttt tatgccagat ggaattcctg attttattta ttcgagtttt tagatgagtg
     7441 tagttagatt tttcttcatt ttgattatag tacttggctt ggttgttgta gttatgaatc
     7501 agagtattag ctcttatata gaacaaaaat atcattttgc attctatcct cataatgatc
     7561 ttttaaaaga agccaatggc ttcaaaatta aattagaaca aattcgtgca attttaagca
     7621 acgaaccctt gcctcaaacc aatgaagaaa ctacaaatca agaaagtaaa tcaacagatg
     7681 aaaacttaag taaaatagat aaagttctaa acactttaga aaatgatgaa aacacttctc
     7741 ataaagaaac aaatctaacc ttaatccaag atgcaaatat tagttttatc gacaatacca
     7801 aattagagct acaaaatgga gatgagtttt tatttatcgg agattcttta atgcaaggtg
     7861 ttgcaatagc cttaaataga gatttaagaa atttaaatct taaggtaacc gatcttagta
     7921 aacaaaatac aggcctttct tataaatcct attttgactg gtcaaaagcc accaatgaag
     7981 cttttgttaa aaactcaaat attaaatatc ttgttgttct tcttggcgct aatgatcctt
     8041 gggatattaa aaaaggagga aattaccatc gttttggctc cccttcttgg atagatattt
     8101 atacaaatcg tgtagatgaa atcattaaaa tcgctaaaaa acataaagcc aaagtttttt
     8161 ggtttgaaat ccctcctgta aaaaaagaag atttgaacaa aaaaatacaa gtgctcaata
     8221 aaatttacag cgatgaaatt cttaaaaata aagaaatttt tatcaacact aagctatttt
     8281 ttagtgtcaa tgatgaatac tcagcttata taaaagatga aaacaataga agtataaaag
     8341 taagaacaga tgatggggtt cattttactc caagtggcgc aagagaaatg tctaaacttt
     8401 tattagaaca cataaaactt aaggaagaaa atgctagtaa ataaatttaa aattatctta
     8461 ttgtttttta ttatttttac tagctcttat gcacaaaatt taaatacaaa tgacacaata
     8521 gattccatac tcaatcaaaa caaaaatcac tctgctttaa caagttatgt attaaaaaaa
     8581 gatcttaaaa atctagaaaa aaaattagaa aaaaatcaaa acataggaat tagaatttat
     8641 ggagattctc atatggcggc tgatttcttt ccgcgtgtca taagaggata tttaatccgc
     8701 tctaactcta taggttttgc ctatccttta cagcccaaat atcaacaaaa tcttaatctt
     8761 gtttattctt ataaaaactt tgaaatttta aactcaagaa atcctgctaa tgctggacat
     8821 aattttccac taggtgggat aatagccaaa gcaaaaatca aaggcgcaaa aatcaacctt
     8881 gatacaacct tagataaaaa aaaattcaag ataggatttt tatttaaagc caaacaaaat
     8941 accaatgctt ttagcatcaa agatgcaaaa aaccaaagct atgagttaag aactacacaa
     9001 attaacaaat ggtcttataa agaactagaa cttgatcttc ctttgcaaat ttcagcctta
     9061 caaaaagatg ctgagctagg aggatatttc atcacaaata aagataataa tgttttctta
     9121 gataccattg caatcaatgg tgccaaaagt gatttatggc tctcttggaa tcaaacagtt
     9181 gtaaaaaaag aactaggact tttacacaat gatttaatta ttcttgccta tggttctaat
     9241 gatgcactct ttaaagggtt tgaaaaacaa aaattcaaaa ataatttaaa aaaatggatt
     9301 agtattttaa aaacttacaa taaaaacgct gttatcatgc taatctctcc accaactgta
     9361 gttcaaaaac aaggtaaaaa ctacaagctt gctcctgatt tttttaccat acgcaaagca
     9421 ttatatgaag ttgctaaaga agaaaaaact cttatttttg atatgcatca gtttatgcaa
     9481 gatagtggag gaaaaaacaa atggatagaa caaaagcttt cgctcaatga tgtacatctt
     9541 actataaaag gctatgagct gatggctaaa aagttactcg aggatttaaa aaatatcatc
     9601 gattattaaa tttaatactt aggaaattct aagttttcat cattaaaact taaagctgtg
     9661 atttgatagt aagaattaat ggtttttaaa agattaaatc tagctcttaa aaattcttgc
     9721 tgggtagaat ttaaagtatt gtttgcatcc aaataatctt ttaattcact ttttcctaaa
     9781 atatattttt cataatacgc cttagtgata agctcttgtt taatgttaat attttgcaaa
     9841 ttttgcaaaa gcaaggtgtt actttgataa tctttataat ttaacgcaaa ttcattcatc
     9901 gcactttgca aggcttgctc ataagaaatt aaaagttgct cataagtaaa ttgtgaaatt
     9961 ttgatatttt gctttactct accataatct aagaaaggta aagaaatctt aacattgcca
    10021 cttaaaattt caaatttaaa actatcatcg atttttttat cacttccgct taatgctcca
    10081 cctaaagaaa tgctaggcaa aatagatttt tgcatggaag aataatcctt aaaggctgat
    10141 tttaagctat tgagtttaga tctcacatct gcacggtacg ctaaagcttt taaaggtata
    10201 ttaaaatcag gacttaaggt tttaaaatca tttaaagata aagttttaaa atactctatg
    10261 taagcaaaac cttcttgctt tgccaataaa tcttgtaaat tttttatgag taaattacga
    10321 ttttgatcat tgcttaataa attttgttta gctcttaata agctttgttc tatgtttaaa
    10381 agatctaatt cttctatttt tccaagcttg tatttataac tataaagctc tttcatttgt
    10441 tctaaatttg aaagataagc tcgaagtaat ttatctacat cgttaaaata agccagctca
    10501 aaaacatcat ttaaagctgt attgatcatg cttattttta aattttcaag atcataagca
    10561 cttgcttttg cactaaattc actcgcactt gcactatctc ttaatttgcc ataaatatca
    10621 agctcatagc ttaaatttaa agaattattg aaatttttac tttgtttgcc tgaatttaaa
    10681 tctttatctc caccaaaacc caaatttcca cttaaagtcg gatataaatc ataattaatc
    10741 aaatcggctc tagccaaagc tgaaagcaaa gtttttctag caatattaat atcgctatta
    10801 ttcaataaaa caaaatttag aaattcattt aattttgcat tatcataaga tctataccaa
    10861 tcataagtaa gatttaaatc tttcatttgt tcttgggtta aatcaacttc tttaggcaag
    10921 ctaagttttg caccacaagc gctcaagaaa aatgctaaaa aaatgctaaa tattactctc
    10981 atatcattcc tttgataatg cactaatagg atttaaattt gctgcatttc ttgcagggaa
    11041 aaaaccaaaa accacaccga taaacataga acttaaaagt cccaaaagca cagaataggc
    11101 atttaaaatc ataggaaaat cagtacttaa agtattaaaa gcaaaaataa caaaaatcga
    11161 taaaatcaca cctaaaatcg cccctatagt acaaatcaca accgcttcga ttaaaaactg
    11221 catcataata tcttctcttc tagcccctat agccatgcgt atgcctattt ctcttgttct
    11281 ttcacttaca gaaacaagca tgatattcat cactcctata cccccaacaa tcaaagcaat
    11341 cacagccaca caagcagtaa gtatggttgt agtgcgttta tttgctgtaa tagcttgttt
    11401 aaaagtatca gaattaaaag taaaaaaatc cttttgcccg cgtttaattt ctaaaattct
    11461 tatgatagca ttttcagcca aagttgaact cacatcatct ttaaccttaa ctatgatttc
    11521 acgcaaattt ctatctcctg taagcttatt catcagtgtt gtatagggta tataaagacg
    11581 cactacatta tcttctatag gtttgtctgt atctttttgt aaaactccta tgatcttaaa
    11641 aggttgagaa ttaaaaagta ccacacgacc taaaatattt tcactttttt catcaggaaa
    11701 aagatttttt ttagcattaa aatctagcac agcaacattg gtactatttt ttacatcatc
    11761 attatttaaa attcttcccg catctatcct taaaccttct atggcaaaat tatttacccc
    11821 cactccttca gctcttgcac ttaaagaaat attggtataa gttgccacac ctgaagtatt
    11881 tgaatgagca tcaactgctt ctaaatattc tagggatctt agcgtttcta aatcactaaa
    11941 attaagcctt gttttacccg aacgcaaatc tccaaaaccc cttccaggac gaatttcaat
    12001 agtatttgtt ccaagtcttg caatggactc aagcacctta gcttgagaac ccaatcctaa
    12061 agccacaaca caaactacag aagcaatacc tatgatgatt ccaagcatag ttaaaacaga
    12121 acgaagtttg tgtgcaagta tggaagaata agctatctta aaacactcaa aggcttgatt
    12181 tttaagcaaa gtaagtgttt ttttctcttt agacattgtt tttaaagtga gtttttcttg
    12241 agctttttcc tttttagtat cgcttaaaat ttctccatct ttaatctcta taaccctttt
    12301 agcttgtgct gcaatttttg gatcgtgagt tactaagact atagtatggc cttgtgcgtt
    12361 aagtttttgt aaaatttcaa gcaccataat gccgctttta ctatccaaag cccccgttgg
    12421 ctcatcagct aaaataagct ctccaccatt catcaaagct cttgctatag aaacgcgttg
    12481 ttgctgtcct ccgcttaatt catttggttt agaatctaac ttatgagcta gttctaaatc
    12541 atttaaaagt tttttagcgt tttgacttct ttcttgtaat ttttttcccg cataaactgc
    12601 aggtaaagaa acattttctt tagcgctaag caagcttaaa agattatatc tttgaaatat
    12661 aaagcctatt ttttcacgcc ttaatcttgc tttttcatca ttattaagtt tagtgacttc
    12721 atattcatca aaaatataag ttccactact tggtgtatct aatgttccta tgatatttaa
    12781 aagtgaagtt ttaccacttc cactttgtcc tataatggca acaaattcac ctttttctat
    12841 acttaaactt acatttttta aaatggcatt ttcgcctata tttttgcaaa tatttttaag
    12901 aaaaatcatt aaaatctcaa cttcacttta ggagctaaac catcagcact tgagcttact
    12961 atcaattctt cattttcatt tacgccttct aaaatttgag tattgataga atctttaatg
    13021 ccaagtttga catatttttt aacagctttt tgattttcta aaatttcaac ataatagcct
    13081 tttggatcgc ttttaattgc ataagttggc actgctaaaa cagcctttgc acttgctaca
    13141 acaatttcat tttgtatgct cataccaata cgcaaaaaat catctttatt aggtacataa
    13201 aattttgcgt aataataaat agcatttgat gagcttgagc ttgaagaact tgaacttgat
    13261 gagcttgagc ttgtactaga atcactcact tcagtatcag ctggatctat acttgcaatc
    13321 ttagcatgat aagttttttg aggatcatta agtaaagaaa aatcaagctc tgttcctact
    13381 tttatcttac tcacatcagc ctctgctatt tccattctta cttccatttc gtctaaatta
    13441 gctatacgga ctatagtagg agtgttttga ttagcattaa ctgtttgtcc ttcatctaca
    13501 gctacattaa tcacaacacc atccatagga gcagtaatgg ttgtataacc taaatctttt
    13561 tgtgcatttt taagagtgat ttcaagctga actacttgag cattaagctc tgcaacatta
    13621 gcttttaaag tataataatt atttttttga gtttctaaat tttcaagaga acttgcttta
    13681 gctgcataaa gtttttgctc tctttgatac tgcttactcg caatctcaag agcaactttt
    13741 ttactctcta aattagcctt agcactttca agctgagctt ttgtaatatc taaatcgttt
    13801 tgttgtttat ctttgtcaat ttgagcgatc aaatcacctt gctttacatg agttcccaca
    13861 tccacataaa gttttataat ttgtccgcta acttgagcac ctacatcgac ttgatctttg
    13921 gcatatacct ttcctactgc ctctatggtt tgagatatat cttttttttg tattttttga
    13981 gttaaatagc tgattttttc atcattatta aaaaaaataa aataagcccc aacacttcca
    14041 agtattgcaa ttaaaatgat taaaacaatc ttctttttca taataacaaa tcctaaagaa
    14101 aaatcaagat taaattttac tcattttttg tgaatttttt gtgaattttt aattctattt
    14161 tataaattta aaaattctaa agccatcatc acatcacctt gcattaagac ttttaaattt
    14221 tcatcatccc aacaaaaagt agaactatga tgcaaagctg gatgatttaa atcctttgaa
    14281 attccaacaa acacataagc tcccattctt tctcgtgtta aaaaagcaaa atcttcagcc
    14341 cccatgtcag gtttagaaga aacaatgata ttttcttctc ctaagacctt tgcaaaagct
    14401 tttcttgcta ttaaagcagc tttttcatca ttaatcaatg gaggaaattc tttagtatat
    14461 ttaagcttat aatctccacc attagatttt gctgtagcag cagccacttc ttctagagaa
    14521 ctttttaaaa tatcttgtgt tttatcattt aaaaaacgca cggttccttt taaataagca
    14581 tttgtaggaa taacattata agtagttcct gcacaaattt gacctacagt aatcacccct
    14641 gcttcataag gggctaaacg cctagaaaca acactttgta tattatttac aaattgcgtt
    14701 gccataatta taggatctat acaagtgtgc ggatgagctc catgtcctcc tctgccaata
    14761 aattccaaat caaaaatatc cgttccagcc atcatttcgc cacttacaat ttgagcagta
    14821 ttttcaagca aagaccccca taaatgacaa ccaaaaaccg catcaacata aggattttcc
    14881 aatacacctg attctatcat aggtttagct ccaccgcttc cctcttctgc gggctgaaac
    14941 ataaatttaa tcgtgccaca aaattcatct ttgagctcat ttaatatcaa agcagctccc
    15001 aaaagtcctg ctgtatgtcc atcatgtcca catgcgtgca tcttaccatc aatttttgaa
    15061 gcataactta gattagtttt ttcttgtaca ggcaaagcat ccatatccgc tcttaaaaga
    15121 acgcattttg gttttttctg actcttcttt tttccttcta tagtagctaa aattcctgtt
    15181 tttgcaatat ttttttgata tttaatgcca aactcatcta aaattttaca cactaaatga
    15241 gctgtatttt cttcttcaaa ttcaagctca ggatgcatat gaatttgatg tcttaaatca
    15301 actactttat catagtactt tagtgctaaa ttttcaacca gcttttgcat tcttttcctt
    15361 aatctaaatc ttttattttc tcatctgctt ttttactgtc aagtttttcc aaattcgcct
    15421 ccatttttcg tatttcttct tctccactac gcactaattt tgcatcaatt ttggaaaaat
    15481 ctccagtttt tttatttgga tattctacct tagaaagtat aaaacgcaat aaatttaatc
    15541 ttgctttttt cttatcatca gaagaaataa tagtccaagg acaagttgga gtattagatg
    15601 ctaaaagcat agagtattta gctaaagtat atttatccca taattcttgc gatttttgat
    15661 ccacaggaga taatttatat tgtttaagcg gatcgcttcg gcgtttttca aaacgttttt
    15721 tttgctcatc ttttgatact gaaaaataaa atttaaaaaa aataatatca ctatttgaaa
    15781 tcatattttc aaacaaaggc acttctctta aaaaatcttt atgttgttgc ggtgtacaaa
    15841 aacccataac cggttctact cctgcacgat tataccaaga tctgtcaaaa atcacaatct
    15901 caccggccga gggcaaatgt gctatataac gctgaaaata ccactgtgtt ttttccacat
    15961 cactaggttt ttcaagagcc acaacgcggc aaccacgcgg atttaaatgc tcaatcaaac
    16021 gtttaatcgc cccacctttt ccagccgcat cacgcccttc tataagtata agaaccttta
    16081 aacccttggc tttaacatga ttttgaaatt tcaaaagctc aatttgcaaa ttctttaaat
    16141 ctttttcata ttctattgta cttttctttc ttttaacaga aacataaatt tcattctttt
    16201 taacaaccgc ttgcgttttt ggagaattat tttcttgcat tttcaaacct ttataaagta
    16261 tttaaagcaa atttaccata ataaattata attgaagcta aaaataaagg aaaaaataag
    16321 tttttaggaa atttatgcgt atttttggta ttattttatt aagtttttgt ttatgttttg
    16381 cttctatatt gtctttaaat gaagctttta atgtaaaatc aaactct
//
LOCUS       DAEDTT010000029        16289 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.029, whole genome shotgun sequence.
ACCESSION   DAEDTT010000029 DAEDTT010000000
VERSION     DAEDTT010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16289
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.029"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..342
                     /locus_tag="KLC54_000679"
     CDS             <1..342
                     /locus_tag="KLC54_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177072.1"
                     /translation="LLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEAN
                     TNLLVQSINDMAESIKEQTAGITQINESVAQIDQTTKDNVEIANESAIISSTVSDIAN
                     NILEDVKKKRF"
     gene            complement(385..2751)
                     /locus_tag="KLC54_000680"
     CDS             complement(385..2751)
                     /locus_tag="KLC54_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HBD9177073.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIAGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFTPELVRVKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFASEFILYKLRAQN
                     KLYTQDPSMRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDA
                     FAKMSKLDPSYEETLKDLALVLSHTNRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACL
                     IRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDD
                     ENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTI
                     LTYAPKAIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRA
                     RALYIQALTYERMQNVQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ"
     gene            complement(2774..4162)
                     /locus_tag="KLC54_000681"
     CDS             complement(2774..4162)
                     /locus_tag="KLC54_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HBD9177074.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYAFLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIAMRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIVFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTAILNGYWYLALFVALSSVIMLYAYLKILIHALFMKNDRVYNIKFSFIQNFILACC
                     VCVSTFAILLML"
     gene            complement(4152..5639)
                     /locus_tag="KLC54_000682"
     CDS             complement(4152..5639)
                     /locus_tag="KLC54_000682"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HBD9177075.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALILMLLSSLMIFLSFLFLKLEQKALVSC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLIALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYVNSPVLVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIENFSLRLREIVALVCIIVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            complement(5641..7431)
                     /gene="nuoL"
                     /locus_tag="KLC54_000683"
     CDS             complement(5641..7431)
                     /gene="nuoL"
                     /locus_tag="KLC54_000683"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HBD9177076.1"
                     /translation="MQNLALISLFSPFVAFLFASCFALSEKKQFVGIICSLLVALSAF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSVVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVARDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKFTAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHNEHPHEASKIALLAMSPLM
                     VLAIVAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGVILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPQFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQIIS
                     QKMIMPNSLNLMLRFLVSAFVILLILVWMV"
     gene            complement(7433..7729)
                     /gene="nuoK"
                     /locus_tag="KLC54_000684"
     CDS             complement(7433..7729)
                     /gene="nuoK"
                     /locus_tag="KLC54_000684"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HBD9177077.1"
                     /translation="MIEKYFFIAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA"
     gene            complement(7726..8244)
                     /locus_tag="KLC54_000685"
     CDS             complement(7726..8244)
                     /locus_tag="KLC54_000685"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HBD9177078.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAIMFFDASKEFKEQLKAKKSFFTLVVLSAIL
                     LLAMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     VLTRKELTKEKQ"
     gene            complement(8241..8882)
                     /gene="nuoI"
                     /locus_tag="KLC54_000686"
     CDS             complement(8241..8882)
                     /gene="nuoI"
                     /locus_tag="KLC54_000686"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HBD9177079.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQTFRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVGNYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDADLLVVKTPNYYDVMIERALENQDTQEQGENK"
     gene            complement(8892..9890)
                     /gene="nuoH"
                     /locus_tag="KLC54_000687"
     CDS             complement(8892..9890)
                     /gene="nuoH"
                     /locus_tag="KLC54_000687"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HBD9177080.1"
                     /translation="MSDFAFFALEALIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFVSLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVAII
                     SYESVGALALIAIVMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYASMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALAVLL"
     gene            complement(9883..12345)
                     /locus_tag="KLC54_000688"
     CDS             complement(9883..12345)
                     /locus_tag="KLC54_000688"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HBD9177081.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMIVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKHWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPANGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGTLLRYDAPTLSYK
                     INNALVINKGSGLYFHPMEDMGIAKYSKNFISHIHKSGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKKIIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVVGNDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDKNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLNPKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGASHE"
     gene            complement(12342..13034)
                     /locus_tag="KLC54_000689"
     CDS             complement(12342..13034)
                     /locus_tag="KLC54_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177082.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGHFCDLDEGYLSAESCFGEEEAGEVLSFLKEAKYLIVD
                     KNIHSYKDSENIKYFLNFLSIKYELKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSLKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            complement(13031..13258)
                     /locus_tag="KLC54_000690"
     CDS             complement(13031..13258)
                     /locus_tag="KLC54_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HBD9177083.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            complement(13255..14481)
                     /gene="nuoD"
                     /locus_tag="KLC54_000691"
     CDS             complement(13255..14481)
                     /gene="nuoD"
                     /locus_tag="KLC54_000691"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HBD9177084.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRIASHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLVFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCATLYKDTPPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            complement(14483..15277)
                     /locus_tag="KLC54_000692"
     CDS             complement(14483..15277)
                     /locus_tag="KLC54_000692"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HBD9177085.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHAVKSDVNESVFKDDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFVADKNGFEVF
                     YQLLNLEKKLRVRIKTFVGVKERLQSVAHVFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGSQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            complement(15274..15777)
                     /locus_tag="KLC54_000693"
     CDS             complement(15274..15777)
                     /locus_tag="KLC54_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HBD9177086.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLV"
     gene            complement(15759..16148)
                     /locus_tag="KLC54_000694"
     CDS             complement(15759..16148)
                     /locus_tag="KLC54_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HBD9177087.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFVFIVLLGVGFLYAYKKGAFAWQSIK"
BASE COUNT         6087 a         3050 c         1975 g         5177 t
ORIGIN      
        1 cttctagctt taaatgcagc tattgaagca gctcgtgctg gagaacatgg tagaggcttt
       61 gcagtggtag ctgatgaagt tagaaagtta gctgaaagaa ctcaaaagtc tttatctgaa
      121 atagaagcta atactaattt acttgttcaa tctatcaatg atatggcaga aagtattaaa
      181 gaacaaactg caggtatcac tcaaatcaat gaaagtgtag ctcaaattga tcaaactact
      241 aaagataatg ttgaaattgc taatgaatca gctattattt ctagtacagt aagtgatata
      301 gctaataata tcttagaaga tgttaagaag aagaggtttt aaccttagat aactagccaa
      361 aaagctagtt atctctaaat ttacttattg atttaaaatt tgatttttac tcttacataa
      421 attctgccaa tttgaagcac ttttgatttc aagacattgt tttaaacttt ctttttcagc
      481 ttgtacattt tgcattcttt cataagttaa ggcttggata tataaagctc ttgctctatc
      541 ttcatctgaa agttttaatt taagtaaatc tgttaaaaca gctaaacttt cttcattttt
      601 attgatttta gtcaaagcat caagatatat aaattctaaa ttaggactaa aaagatttat
      661 acctttaaaa ttttgatagt caatggcctt aggtgcgtaa gttaaaatag ttgtttgcat
      721 attatgatca ttagcgtaag aaagtaaagc atcgtaggct tctaccatac taaaattcat
      781 tggaaaactt tctaaaattt gcaaaatttt aatggcttga ttgtagtcat ttaagcgcaa
      841 taaagataaa aattgcaaat aataagcctt aaaattctca tcatcacttt ttaaaattct
      901 agaattagct atgtctttag aaattttaat cacctgagga tattgtttat tgtcaaaaag
      961 aatagatgct ttttgaagac cataaaatat agaatcttca ttataatttt tatctatata
     1021 atcaagtgct tgttcaacat tagaagttct gataagacaa gctaacattt gttttttatt
     1081 ctcaattttc tgacctatat cataagcact aaaacgcata aaaatatttg cagcattgat
     1141 acaattatca gcttttatcg cattttttaa atcattaatg gctgctttct ctaaaaattg
     1201 agtagcattt ggaatttttt tactttctat aagatcttta taagctaaaa tagcactaaa
     1261 atttccctct ttataataaa gtgcaacatc ttcatctaaa gctttatttg caatattctc
     1321 atctttattt gcatattgct tcattaaatc tgtataacgc tgatgcaaaa agcttgcatt
     1381 attatcacct aaagcaaaga atacctcatc acttgctttt ttaatttcat ctaaatactt
     1441 accatctaaa taatcatcca tatataaatc aaggtatttt ttagcatcac tagatctgtt
     1501 agtatgtgat aaaactaagg ctaaatcttt taaagtttct tcataacttg gatcaagttt
     1561 tgacatttta gcaaaggcat cttcataaat acttgcactt atatcaaatt gtcctttttg
     1621 attaaataat ttagcaagtt ctaaagatct tggaatatct tttccaaaat attcaggatt
     1681 ggcttttaaa atggtattaa tatactctat agctttattt acttgctcat ttgaaagcaa
     1741 attctttgcc aaactcatag ctgctcttgc agctaaatct aaattttttg tattaaaata
     1801 agtattttca taaatattta cagctttttc tttttcattt aaattataaa tatagtctgc
     1861 ataatcaagt tttgataact gagtaaaata attattaggt tgttcattat ccaaaatcga
     1921 cattgtatac tctacatcag cacgctgagc taaagcgata taagttctta acattatatg
     1981 taaaacttct gaaaaatttt tatcacttgt aaaagtacgc gtccaatttt tagcatcatc
     2041 aatcatcttt tctaaaattt gttgatcacg catacttgga tcttgagtgt aaagtttatt
     2101 ttgagctctt aatttataaa gtataaattc actagcaaaa atactgccac gatatctatt
     2161 gatagcattt tgtgcatcaa tcacaacttg attgtaatta gccttatcgt attctttttt
     2221 gatgcgtaaa taagtattga tatctgcact ttgaggaata acaacaggat cagaatttaa
     2281 atctaaagct ccaacataag gcaaactctc atgtggaaaa ttgatattaa aatcaagtcc
     2341 atcatagtct ttaacgcgta ctagttctgg tgtaaaaata aaagtaaaag ccttactttt
     2401 atgcgaactt gatgaactga gttctttatc tatataaata ttttgagaag tgtcaaacat
     2461 tcttgcttgt atttttggca aaatgatcat tttaattttt tgagcttctt gtataaattt
     2521 taaatcaaaa gcagaaaaac tctgatcttt taatttatta tcaaccatac ctgcaatatc
     2581 acattcaaaa tgaacttttg cttcggtaat aaatttttga catgtaaatt ctaaatcatt
     2641 actcgcatgt aaaactgcaa aagcttgatt attttcgcga cccgtattta aaacaagctc
     2701 aaaagcaaaa gcatttaaaa aacttaataa aattaaaaat aatattctca taaaaataat
     2761 tatagcaaaa ctcttataac attaacaata tagcaaaagt gcttacacaa acacaacaag
     2821 ctaaaataaa attttgtata aaactaaact taatattata aaccctatca tttttcataa
     2881 ataaagcatg aattaaaatc tttaaatacg cataaagcat aataacagaa gataaagcca
     2941 caaaaagcgc caaataccaa tatccattta aaattgctgt atttaaaatc ataaatttac
     3001 cccaaaatac tccaaaaggc gggatacctg ctaaagaaag cacactaatg cttaaacaaa
     3061 aaacaattaa aggtttttta accaaaagcc catttaaact ctcataagaa ttattctcat
     3121 aattgcttaa aatcataaat acagcataat ttgcaaaagc aaataaagtc caatatccaa
     3181 aaatagcaag caaaattcca tcaaaatttt gttcttttaa taaaggaatg caagctacca
     3241 aaaccaaaga agaatgcact acagaactat aagcaaacat ttttttgata ttgttttgac
     3301 ttagagccgc aaaagcgcct ataagcatag aaaaaatcgc tagaactatt atgatatatt
     3361 caaaacctgt attatttaaa aaatcaaaca aacgaataac cacaaccaac atggcaactt
     3421 ttggcacaac tgaaataaaa gcaaccaaat ttgtatgtgc tgcataatac acatctttaa
     3481 gccaaaaatg aaaaggtgcc aaagaaagct tgattgcaca aagaacaaaa atcatcactc
     3541 cggcacccaa aagcatggga tctttttgaa actcattttt taacgctaaa ttagcagata
     3601 aatctaaagt tcctgttttt aaataaataa aagctacagc cataacaaaa aacccagctc
     3661 ctacagccgc tacactaaag tattttatcg cacttgaaat agcattatca cttccacgca
     3721 ttgctattaa agtataaagt gctaaagaag aactttcaag tcctataaaa ataagcacta
     3781 aatttgagct tgaaaccatc aaaagcaaag atgcgatcat aaataaaaat aaagcataaa
     3841 attcaccttg attttcttct ttttgcatta aaagatataa aaatgaaaaa cacaaaatca
     3901 ccaaaaaagc ataaaatgaa acaatatcat tatttaaagt agccaaaaaa gcttttgctt
     3961 ctaaaccttg agcatttgca ttatttaaaa tcaaaaaagc acttacaatt aaagataaag
     4021 aacttatacc gatataaaac gatcgatgaa atttccaaaa accagagcaa agcaaaagaa
     4081 ctattgcagt tgtaattaaa aataaaaatg gataagataa gcttatattt aaaagttcta
     4141 aatttaaaaa attatttaac atttgcctct cctattttag ataaaaaatc taaagtattt
     4201 tgctcaacag ctctaatatt cattgttttt ataagattat ccacatcttt ttgtatgggc
     4261 tttaaaagta tatttggcat aagccctagt ccaaaaatca ttactataat gcacacaagc
     4321 gctactattt ctctaaggcg taaagaaaaa ttctctataa agctttgttt ttgcatgaaa
     4381 aatatttttc taaatactgc gaacatataa attgctccta aaataatcac caaacctgcc
     4441 aacaaagcgt aaaataaatt aatctttgct atacctaaaa gaattaaaaa ctctcccaca
     4501 aaagaaacag ttaaaggcaa agaaacgctt gcgagtaaaa ttaacataaa gaaaattgaa
     4561 aataaaggtg cttttttggc caaagaatgg taaaaagaaa tatcataagt atgatatctt
     4621 tggtataaaa gttcaaccat taaaaataaa gctcccgtta caataccgtg tgcaaacata
     4681 taaaaaaccg caccgctaat acccaaagca tttaaagaaa aaattcccaa aatcatcaca
     4741 ccaagatgtg aaatagaact ataagcgatc aattctttaa tattttctgc tctataagca
     4801 attaaagcat tataaacgat actcactata cataaagcta caattaaagg cataaaatac
     4861 acactcgcat ctggaaaaag tggtaaacaa aaaagcaaaa atccaaaagg agccatttta
     4921 aaaactacaa gcattacaga aacaagaaca ggcgaattta cataaacctt aggtgcccaa
     4981 gtatgaagtg gaaataaagg agctttgata gcaaaagcga taaaaaatgc tccaaaaagt
     5041 aaaagttgct ctgtaaaatt tactgccgag gcattatttt tccaaatttc taagtcaaaa
     5101 gtgaagatgt ttaaaagttg ataatttaaa taagcttgat aaatcaatgc tataagcatt
     5161 aaaattgaac ccgcaaaagc atagataaaa aatttcaccc ctgctctaaa atctttacca
     5221 taaactccca taatataaag caaaggcaaa agagaaaatt cccaaaaaac ataaaataac
     5281 aaaccatctt ttgcactaaa aagtcccata attgcaaatt ctaaaaagaa tatacaagat
     5341 acaagtgctt tttgttccag ctttaaaaat aaaaagctta aaaatatcat caaagaactt
     5401 aaaagcatca atataagtgc gatactgtct actcctacat gaaagctaaa aaatttcaaa
     5461 attttaaaag aaagattata atcaaagctt accccttgta aaaaatccgc aaaaatatcc
     5521 aaatttaaag ccaaaatcat aaaacttaca acaacgctaa aaaccttaac gcctccacga
     5581 tttaaaagca aaaccacaaa agcagaaatt aaaggaaaaa atatcaaata atttagcatt
     5641 ttacaccatc cataccaaaa tcaacaaaat cacaaaagct gacaccaaaa atctaagcat
     5701 taagtttaag ctgtttggca taatcatttt ttgtgaaata atttgagaat acaaagcaat
     5761 tttttcaact attctatcaa aaatataaag atcacaatgc tttaaaatcg cacataaact
     5821 ttcatatttt gaaacgataa attgatgata gaattgagga ataaaataat cattacttaa
     5881 aagtttgtga attttatttt cttcaatact ttctttaaac caagaatttt tataagcaaa
     5941 aatagccaaa attacaccca aaatagctgc tacactcgca caaatcatta caatttgatt
     6001 ttgtgcatca ataaaaacta attttgtgct taaatattca aaaaaactat gttcaaaaaa
     6061 tcctgcaaca atagctaaaa ccatcaaagg actcatagcc aaaagtgcga ttttacttgc
     6121 ttcatgtgga tgttcattgt gtcttgcagg ggtaaaaaat accaacatta aaagtctaaa
     6181 gctataaaat gctgttaaaa aagctgcgat taaaagcact aaaaaaatac catggtgaaa
     6241 agaaatgaaa gaatatccta aaatcaaatc tttagagaaa aatcctgcaa aaggataaat
     6301 tcctgctaaa gctaaagatc ctatacacat caaaatagcc gtaaatttta aaggtttaaa
     6361 aagtccaccc atttttttaa tgtctaattt atcattcata gcatgcatta catttccagc
     6421 acctaaaaaa agtaaagatt taaaaaaagc atgtgtagct aagtgaaata aagctatacc
     6481 ataagcccca agtcctgcgg ccacaaacat atatccaagt tgcgataagg tagagtaagc
     6541 aataatacgt tttaaatccc tagccaccaa agccatagag gctgcaaaaa tcgctacaaa
     6601 agctccaagt aaggcaataa tataagaaac ctcaggaact aaatcataaa gcgtgctagc
     6661 acgaattacc aaataaaccc ccgctgttac catggttgct gcatggatta atgcagaaac
     6721 aggagttggc cctgccatag catcagcaag ccaagtgtga aaaggaaatt gtgcagattt
     6781 tcccatagct cctataaata aacaagttgc gattaagatc aaagcattgt gatctaggct
     6841 ttgtgccatg gaaaaaactt catcatattt taaagttcct gcttgtaaat aaagccaaaa
     6901 aattcctaaa agcataccca aatccgcaat acgattcata ataaaagctt cattagctgc
     6961 aaaagaataa gtatcgtttt tataccaaaa acctatgagc aaccaagagc aaagcccaac
     7021 gccttcccaa cctacgaaaa gtcctaagaa attatcactc ataactaaaa aaagcataga
     7081 aaagacaaaa agccccaaat aagcaaaaaa tttattaaaa ccttcatcat gagccatata
     7141 aaaaatacta taaaaatgca cacaagtagc tacaatacct acaacactca tcatagtgag
     7201 cgaaatggca tctatatcaa agccaaaatt tactccagca aaccattcaa acaaactcac
     7261 attaaaagct tcattgcaaa aaagcaaata caaagaacaa aaagcactca aagctactaa
     7321 aagtgaacaa attatcccta caaattgttt tttctcactc aaagcaaaac aacttgcaaa
     7381 caaaaaagct acaaaaggac taaaaagaga aatcaaagct aaattttgca tgctaagcct
     7441 ccacttcttt taagcttttt aattccaaag tgccttttct tctataccaa agcacacaca
     7501 aagctacacc aacagctact tcacaagctg ctacacccat gataaaaagc gcaaaaacct
     7561 gtccatttaa atcattgtgc attttagaag ctgctactaa ggctaaatta gcactattta
     7621 ataaaatttc actcgaaata aaaagcatga tgagattttg tctttttaaa atccctacaa
     7681 gccctatgac aaacattaaa atagctataa aaaaatactt ttctatcatt gtttttcctt
     7741 tgttagctct ttacgagtaa gcactatagc acaaactaaa gcaatcaaaa gcaaaatagc
     7801 tataaactca aaagctaaaa gatattttga aaaaatcgct aaagccagtt gtttattaaa
     7861 atcaaacaaa gcaggatcat ttaaaggcaa atccgtgctg atattttggt atttaaaacc
     7921 tataagcatg gccaaaagta aaatcgcact taaaaccacc aaagtaaaaa aacttttttt
     7981 agctttaagt tgttctttaa attctttaga agcatcaaaa aacattatcg caaaactata
     8041 aagtccaagc acagctccac tataaacaat aatttgtatc acgcctaaaa actctgcatc
     8101 aagtaaaaaa taaaatcccg ataaaaacac cattccaccc gctaaagcag aaagagaata
     8161 aagcatattt ttacttaaaa ccgcaatgcc aaaaaaacct aaaaccacta cactaaaaaa
     8221 tacaaaagcc aaattttcta tcatttgttt tctccttgct cttgtgtgtc ttgattttct
     8281 aaggctcttt caatcatcac atcgtaataa tttggtgttt ttaccaccaa taaatcagca
     8341 tcttttctaa ggcttcccgc tccttcaaat tcaacttgat ttttaagctt atcaatagga
     8401 gttaaaaaat cttgcttata gccaaaataa gatctttgtt cagccgcatt ttcatactct
     8461 gttccatgta ctatagcaag ctcagggcaa acctcagcgc aaaaaccaca ataaatacaa
     8521 cgccctaaat taatactata atttcctact tttttacgcc cattttcatc taaagaagtt
     8581 tccattctaa tacaattgct aatgcaaatt ttttcgcaaa gcccacaacc tatacatctt
     8641 tcattttcgc tttctataaa acgcatcaaa cgatgaacag cacggtaacg attgtcaagc
     8701 tttacctttt caaaaggata tttaatcgta gcgctattat ttctcttaag caattctctc
     8761 atcatcacaa aaagccctac aaaaagttct agtttaacgc ttctacgaaa agtttgtgaa
     8821 attttctccc aagtgctaac aggagttttt cttttctcat ccactaaata ataatttttc
     8881 atatcaaact cctataaaag aactgccaaa gcagtgatta aaaggtttaa aaccgctaaa
     8941 gggattaaga tcaaatagca cattttcatc acttgatctg gacgcaattg cggaaaagca
     9001 gctcttgccc aaaaatacca aaagaaaata aaacttgatt ttactatcat cataatccaa
     9061 ccaggaataa tccaaaagct attaaaaccc cctaaaaaca aaagagttac caaaatagct
     9121 ccagctatca tagaagcata ttcacctata aaaaacatac cccatcttaa acccgaatac
     9181 tccgttccat aacccgctac aatttcagca tcattttccg tcaaacaaag cggagttcta
     9241 ttagtctcta taaataaagc aattataaaa agcacaaaag ccaaaggctg tttaaaaata
     9301 agccaggaaa aaaatccatc gctttgataa ttgttgatat ccaccaaaga aaaagaacct
     9361 acaagcatta caatagcaat caaagctaaa gctcctacgc tttcatagga aataatcgct
     9421 acaagccctc ttgcagcccc taaaatcgac catttattat tacttgcaag tccacccaaa
     9481 aacaccgcat aaaagcaaag tcctgaagtg ccgatgacaa aaagcaaagc tacattgata
     9541 tctgccacta taggctgaat cacccttcca aataaagtaa attcaggtag cataggaata
     9601 gctgctaaag aaacaaaagc acaaatagca gaaatcaaag gtgctatagc aaaaataaat
     9661 ttttgcgaat ttgaagggat tatatcttct ttggtaaaaa gttttatcat atcagctaca
     9721 agttgaataa gcccaaaagg ccctaccata tcaggcccta tgcgtctttg aaaataagct
     9781 aaaacctttc tttcagcata agttgcaaga cctgctaaac tcgcaaatat tgcaatgata
     9841 ataatacatt taatcaaagc ctctaaagca aaaaaagcaa aatcactcat ggcttgctcc
     9901 taatttttct aaattcgcca caacaaatct ttcatcaaaa aagcttagcg tgtcaagctt
     9961 ttcatcaaaa tacggcaaga aagctccatt ttttatatcc ttatccacac gcacgctaag
    10021 gcttaattct ttatctttta ttttaagttt tacaagatct ttatctttta aatttttctc
    10081 tttagctaaa ttttcactta cacctaaaaa aatcacctca ttaattgcac tagcacgatt
    10141 tgaaaatcta ccaaattgat agctaggatt agcactataa agcaaaattt catcttcttt
    10201 tgggtttaaa ttttcaaaat ttggagagat gaattctttt ttagcaactt gtttgaaaca
    10261 ttctaaatta agttcatatc cccttttaca atcgcctgca ttagtataaa aattgtctaa
    10321 atgatcaaaa tcaatcggag aaaaaccttt atttataggg agtctcttag tataatttat
    10381 agtatattcc tcatcaaaac ctaaagcatt agctaaatca tttaaaaaat atcccttaaa
    10441 ttctaaagca gcgttagttg gtaccactct tttatcataa tttaaaaaag ttccttcttg
    10501 ctgatttaaa ctcgcactag ctaaatttgc atgctcttca taagaaaaac taaaatcacc
    10561 tttttcattg tagcctaaag tcttgccttc ttgtgtgttt ttatccaaat cacaaatcat
    10621 agccacacct aaggtattag tatgcgtagg atttaaaaag actttaaaag gagtagtatt
    10681 ttggatcaaa gcaagtaatt tagcaagttt tttcgcattt ttatgaaaat aaaaatcatt
    10741 ccctacaaca agagtaaaat ttgctttttt aagcaataaa tcttctaatt tatcttcatc
    10801 tatgcctaaa tttttagcaa aaacagagcg ttgtacttct ataatttttt ttactttttt
    10861 aggtacgact ttttttactt ctttttgaat ttcattgcct tcttcatctt tttctatgac
    10921 ttgttctaca acttcttcgt tgatactttc ttctatttct ttattttcac taacaaaaaa
    10981 ctctgctaaa tgagttttga taccttcatc ttggctaaat ttttgaagta aaaaatataa
    11041 aatttgctct tcatcgccac ttttatgaat gtgtgagata aaatttttag aatattttgc
    11101 tatacccata tcttccatag gatgaaaata aagccctgag cctttattta tcactaaagc
    11161 attattgatt ttatagctaa gcgttggagc atcatatctt aaaagcgttc cagccacaac
    11221 caaaaaatca ctttttgtta tatcttgagt attagcacta taaaactcac cggaattagc
    11281 gataaattct tgtaaaaatt ctttaaattt caaagcttct tcattgatca aagaaagatt
    11341 aaatttcttt tttaaatttt gtaaaatcaa agcttcttca ttggtaataa aactattaaa
    11401 tttaatgttt ttaatttcat ttttctcaaa aagttccaca agttctttaa aggctttttc
    11461 gtctttatcc gcctcatttt gcgtatcaaa agcaaatctt gcagccttat ttaaactcgc
    11521 aaaggcaaaa tcattactca cacgataaat tttttctttt tgattgctaa taccactttg
    11581 cttaatatca taatacatca actcacaatc gcttgaatgc ggatttgaag cagggattct
    11641 tttaagttcc caaatatttg aagtgtattg aaatttcgaa cctattaaag ctcctgttgg
    11701 acatacgctt gtacattctc cacaaaatga acaatcaagc gtatcgccat ttgcaggacc
    11761 tatcaaactt ttttgaaatt tagtccaaat cgcataagca tcttttccca tgctctcttt
    11821 aaagctatta tccacactat ctccaccacg aggaacagtc tttaaagcac tttcgccgat
    11881 tttatcctta caaaccgtaa tgcaacgctc acacactatg caaagtgcgg gatcgtaatt
    11941 aatcattccc caatgtttat gcggtttatg cgtgtcttta atccaatgct tttgaacatt
    12001 tacacggctt ttatgagtga aattttgcaa ttcacactcg cctgatttat cgcaaacccc
    12061 acattctaaa ggatgattga tgcaataagc ttgcatgatc tcatttcttt catcccaaag
    12121 attttgtaaa tcactttcta caatcatacc ctcttttgct ttagtattgc aagaatatac
    12181 ctttttacca tcagcttcaa ccatacacat acgacaagcc aaagtaggac tacagcctga
    12241 aagatagcaa atcgctggga taaaaatatc atttcttctt gctatattta aaatatattc
    12301 gccttcttca aaggcgcaat ctataccatt aatcttaact gtcattttgc ttcctttatg
    12361 cgaattggag taaaatcaaa accattgttt tcataattta aaaaagctat agtgccttgt
    12421 aaattttcat ctaaacaaag cttggtttta agactaaaat ctttagccaa aatttcaact
    12481 tcactttgat ctttgcattt tgcaatttgt aaaaattgct ttgaacaatg taaattttta
    12541 tcttgtaaat tggctctaaa aagcactaaa ccatcataat tatcaagttc ttttagagta
    12601 tttaattttg cctttttaaa atcgcattct tcttcatcac tatctaaaat ctttaattca
    12661 tattttatgc ttaagaaatt caaaaaatat ttgatatttt cgctatcttt gtaagaatgg
    12721 atatttttat ctacaattaa atacttagcc tcttttaaaa aagaaagcac ttcacctgct
    12781 tcttcctctc caaagcaaga ttcagcactt aaatatccct catctaaatc gcaaaaatgc
    12841 ccttcatcgc ttaatttaca aagcaaggct aaaacaaaac tcaaacttgc aatttcgcat
    12901 ttgtaaaatt tagcttttaa gtttttatct tccaaacaag aaatattaat gctatttaca
    12961 cctatttttt cacataaatt tttgttttta aggcttggca tatctaaaaa acaaagagca
    13021 ttatcataaa tcataccctc tcctttttta taacaatagt ccaatccact tgattaaatt
    13081 tcaaagaatt taaaagctca cagccttgtt cttttacaaa agaaaaactt ttttcaacag
    13141 gagaaaaatc gccgatttca aaaagcacca ctaaaacctc gccttgtttt gcttctttta
    13201 tgatttgtgc taaatcttca aaaagctctt tgctttttct taaatctact cttctcatcg
    13261 atctatctca cctaaaacta tatttacatt acccataatg gctacaacat cagccaaata
    13321 agtacctaca agcatttctt caaaaaacgc acaatgccaa taactaggcg ttctagcctt
    13381 taaacgataa ggtcttcctg taccatcact atggataaaa aagccaagct cgccttttgg
    13441 actttcagta ggcacataaa cttcgccttt agggggtttt aaaccttgag tgattaaaac
    13501 aaaatgctgc attaaagaat aattctgcgt taaaatttgc tcctttgaag cacttacata
    13561 ctcaggatgc gtagctaaaa tttcaggtgg ggtatcttta taaagcgtgg cacattgtct
    13621 aaggattttt aaactttcac gaaattcttg catataaact ttatatcttg cataagaatc
    13681 cccttgcgta gcataaggca caccaaattc aacttcatta taaagcaaat aaggctcttc
    13741 tttgcgtata tcgtatttta taccacttcc tcttaacatc acacccgtac aaccccaatt
    13801 taaggcttgt tctttagtaa ccacacctac attttcagtt cttaaacgcc aaattctatt
    13861 atcatctaaa agatcttcat aatcttttaa atcatttgga aatttatcgc aaaatacaag
    13921 catttcttct agataatttt caggtaaatc aagcataacc ccgcctattc tcatagaaga
    13981 atgtgtaagc cttgcaccac aatacttttc tatcaaatcc aaaacatatt ctcgttctct
    14041 aaagcagtat aaaaacacac tcatcgcacc aatatcaagt gcatgagtgg caagccaaag
    14101 taaatgtgat gcgatacggt ttaattctaa aagtatcatg cgtatgactg cggcacggcg
    14161 tggaatctct aaaccacaaa gcttttcaac cgctgcgcaa taagcataat tattcgctga
    14221 agcagcgata tagtccattc tatcagtagt aggaataaat tcttgataaa tcatattttc
    14281 agccattttt tccataccac gatgcatata acctatacaa ggacgcgctt ttacaacttg
    14341 ctctccatca agttctaaaa taaggcgtaa atttccgtgt gctgaagggt gttgagggcc
    14401 taaattgata atcatttttg agtcttcttg ctcaaaagct atattttcat aataaggttt
    14461 taacttgcta ggaatttgca ttttaacgcc ttttctctaa aatttttgct tcatcgcgtt
    14521 ttactttttt tacaaaagcc acgccttcat cttcttgata ttcttgttta aaggaaattt
    14581 ccttcttttg actacctttt ggcacttcat gataaagtct tgcaaaattt agcgtatctt
    14641 tatcatcagc aaaaccagaa tctctttgct cttcacccac tacttcacga tattctttgc
    14701 caaaaatttt atcaatctca taccatcttg caaactcatc gccctttaaa ggataagttt
    14761 ttaaaagcgg atgtccaaac caatcatcag gcattaaaat gcgttttaag ttaggatgat
    14821 ttatgatgaa aattccaaac atatcataaa tttctctctc gctccaattt gcccctttaa
    14881 aaacatgagc cacgctttgc aaacgctctt ttacgcctac aaaagttttt attctcactc
    14941 ttaatttttt ttctaaattt aaaagctgat aaaacacttc aaaaccattt ttatctgcta
    15001 caaaatcaat agcacttgcc tctgtaaaac ttaaataccc taaagtttta agcatttgca
    15061 aggttttaac attgtcttct tttttaattt ctattaccca aaaatcaagt tctacaaaag
    15121 aatttaaaat ttctacttga gtttttaaaa cttcaaaatc atctttaaaa acactttcat
    15181 taacatcaga ttttacagcg tgtggcgcgt gataaaatct atctttgtaa taattttgag
    15241 tttgagcatt ttttttatcg ctatactttc tcattatacc aaccttttag gtgcgatttt
    15301 acgacttgct ttttctttgc ggatcttttt ttgcaaaatc atcaaagcaa actgaaaact
    15361 ttctggacgt ggagcacagc ctggcacata aatatctaca ggtataattc tatccactcc
    15421 ttgaaccgta gaataagtat taaacatacc ccctgtattg gcacaacttc ccatagaaat
    15481 cacccattta ggatcaggca tttgatcgta aagtcttctt gtaaattcag catgcttttt
    15541 acataaagtt cctgcgataa tcatcacttc actatggcgt ggtgaagctc taaaaatcgt
    15601 tccaaatcta tcaaaatcat atcttgaacc cccagccgcc atcatctcaa tcgcacaaca
    15661 ggcaagtcca taagataaag cccataaaga attactcctg ccccattgaa ctagtttatc
    15721 cacactagtt aaaactacgg gcaaaccact tgcataattt acttgatgct ctgccatgca
    15781 aacgctcctt ttttataagc atataaaaat ccaactccta aaagtacgat aaaaacaaaa
    15841 acttctaaaa gcccaaacca acctaaatct ttaaaaatca aagcccaagg aaataaaaac
    15901 acaacttcta tatccaaaag tatgaagatt aaggcgatga tgaaaaattg agagttaatc
    15961 ttgttagctt gtttaacagg aataggacca cattcataaa ttccaagtcc taattttttg
    16021 cgattttttg cggcaaaatt attaccgatt tttgaagcta aaaaaaccag tccaaaaaaa
    16081 ataacactag caagtactag cattaaaaaa ataccaaaat aaggatgcga agcatctata
    16141 tgagacattt attctccttt tttaaagcac tttaatcact ccacaacaaa aattaaattt
    16201 acacttttct ttattttact ctaaactttc tatattgaaa cttatattaa aaaatatttt
    16261 ttaaagtttt aattttttat gattaaatt
//
LOCUS       DAEDTT010000030        16088 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.030, whole genome shotgun sequence.
ACCESSION   DAEDTT010000030 DAEDTT010000000
VERSION     DAEDTT010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16088)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16088)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16088
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.030"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(176..1372)
                     /locus_tag="KLC54_000695"
     CDS             complement(176..1372)
                     /locus_tag="KLC54_000695"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HBD9177088.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCEPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            1512..2735
                     /gene="sstT"
                     /locus_tag="KLC54_000696"
     CDS             1512..2735
                     /gene="sstT"
                     /locus_tag="KLC54_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HBD9177089.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIVLGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFLASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSEIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFIVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVTTMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYGISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            2745..3632
                     /locus_tag="KLC54_000697"
     CDS             2745..3632
                     /locus_tag="KLC54_000697"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HBD9177090.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLKGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVSRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHIHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGDVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSDERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            3636..5357
                     /locus_tag="KLC54_000698"
     CDS             3636..5357
                     /locus_tag="KLC54_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HBD9177091.1"
                     /translation="MLEWDLSALFHDKEALQNFTQDQIQQSLNFKKNYENKLYALNAN
                     EFLQALKDYENLNQALGKIMTYAYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELAPEKSQEFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEILSKMYDEDRKTRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYDIAKNAFNQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTDKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQKMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            5351..5788
                     /locus_tag="KLC54_000699"
     CDS             5351..5788
                     /locus_tag="KLC54_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177092.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDVKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQIENNILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            5785..7860
                     /locus_tag="KLC54_000700"
     CDS             5785..7860
                     /locus_tag="KLC54_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HBD9177093.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIKYISYCKNEGKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAVLFRVNALSRAIEEAFMKEKISYKLLSGMRFYERLEIKD
                     LISYLRLILNPNDDLSFRRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPEASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVAITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            7857..8675
                     /gene="truB"
                     /locus_tag="KLC54_000701"
     CDS             7857..8675
                     /gene="truB"
                     /locus_tag="KLC54_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HBD9177094.1"
                     /translation="MNKIFAAFKPRGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIKNIKEFDLANLQQII
                     DQMQGIISYTPPQFSAKRINGTRAYELAKKGIEANLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYINLKPNF
                     IKDLNKLENGAKIFVEELKFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            8669..8896
                     /gene="csrA"
                     /locus_tag="KLC54_000702"
     CDS             8669..8896
                     /gene="csrA"
                     /locus_tag="KLC54_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HBD9177095.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            8893..9660
                     /locus_tag="KLC54_000703"
     CDS             8893..9660
                     /locus_tag="KLC54_000703"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HBD9177096.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDLFDELELVDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSKRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLMNETLNLKLNLQELINLSIQLGSDIAFFLSGFHSANVSGCGEIIEEF
                     EDDIPNLKWTFPQISCQTKAVYDEFDRGIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDR"
     gene            9657..10109
                     /gene="smpB"
                     /locus_tag="KLC54_000704"
     CDS             9657..10109
                     /gene="smpB"
                     /locus_tag="KLC54_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HBD9177097.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGKNLHDKRETLKKKQADLEARAAMKNYK"
     gene            10120..10722
                     /locus_tag="KLC54_000705"
     CDS             10120..10722
                     /locus_tag="KLC54_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HBD9177098.1"
                     /translation="MKKILTLFLISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFADDYGAYYFLSNGGSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNAPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            10722..11012
                     /locus_tag="KLC54_000706"
     CDS             10722..11012
                     /locus_tag="KLC54_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HBD9177099.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVIDAAKLANFPLQAKVEEE"
     gene            11009..13138
                     /locus_tag="KLC54_000707"
     CDS             11009..13138
                     /locus_tag="KLC54_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HBD9177100.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSIDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIQDSRSYSSYLLKKHNINLTKIQELQNHENIQNLSNHTSNLTLLAQNGKIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILNELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDCAIDLIDELGASFALNPKAKKNAN
                     LKDLENVLAKMTHHHKMFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTEFCKALAEFLGLNLERFDMSEYAEKHAISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSVDDKVKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNGKLEFIF"
     gene            13113..13760
                     /locus_tag="KLC54_000708"
     CDS             13113..13760
                     /locus_tag="KLC54_000708"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HBD9177101.1"
                     /translation="MESSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKVAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(13783..15072)
                     /gene="cetZ"
                     /locus_tag="KLC54_000709"
     CDS             complement(13783..15072)
                     /gene="cetZ"
                     /locus_tag="KLC54_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HBD9177102.1"
                     /translation="MFGAKKNNTEIIEQLEKKCNGLGDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYSDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGHVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLRLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
     gene            complement(15153..15779)
                     /locus_tag="KLC54_000710"
     CDS             complement(15153..15779)
                     /locus_tag="KLC54_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HBD9177103.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLLSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIAAMGFKMIIVGLKDIFNL"
     gene            complement(15794..>16088)
                     /locus_tag="KLC54_000711"
     CDS             complement(15794..>16088)
                     /locus_tag="KLC54_000711"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HBD9177104.1"
                     /translation="GKYNDFYEKGIYQCKQCGASLYKSEDKFKSGCGWPSFDDEIKGA
                     VKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKNVRHCVNSISLEFVKTKD"
BASE COUNT         6026 a         2452 c         2370 g         5240 t
ORIGIN      
        1 ttttgactta gaggggtttt taccccaaaa gctaaattaa tttagcttcc ttcctaactt
       61 ttatatttat gggggatatt gaaaaatatc cctctaagtc aaaaattaat ataacctcat
      121 taattcttta taattataca agccttattt aagcttgtat aatattgtta attttttaaa
      181 gtagcttttt aaactgttct agagcatcaa gtttttccca aggatagtcc ttttgtccta
      241 cttgcccacg agctgctaca tccgcataaa gaaaagtttc tttacttggt ttatccagat
      301 gaaatttatc acgaatccaa tttggtgtta aagagaaatt ttgcataaca aaatcactta
      361 aaacatcgtc atttacacta gtatttgtgc ccatacaatc cacgcttacc gaagtaggtt
      421 ttgcaacacc tatagcatag ctaagttgaa caatacattt tttagcaagc cctgctgcaa
      481 ctatgttttt agctagccat ctacctgcat aaagtccact tctatcaacc ttagtataat
      541 ctttgctcga ttgtgcgcca ccacctattg gagaataacc tccaaaacta tctactataa
      601 gctttcttcc tgttaaacca ctatcatgca aagaagaatg attaacatat ttaccggttg
      661 gattaattaa aattctagtt ttattaggat caaaaagttc ttttggtaaa ttactatcta
      721 agataagttt catcaccaaa gatcttaaat cttctatttt catactttca acacaaggtg
      781 cagaaactac tatagtatgg atactttgcg gttcgcaatt ttcaaaattc gccttagtac
      841 cataatcaat agttacttga gttttaatat ctactccaag ttcatgtgga tttgcttttg
      901 cataagcata aactctatcg catagcattc ttgcataact aatagctgct ggcatgtatt
      961 cttcagcttc gcaacttgca aaaccaaaca taataccttg atcacctgct cctgtttcgc
     1021 catcttcttg atcgacacct tgattgatat cagggctttg ttcatttaaa aacaccataa
     1081 catcaacttc atcaggatgc aaacactgct ctttactaaa atgccctgct ccgtcataac
     1141 caatgttttt taaaacatct ttaactaaat tatcgtaatc agctttacta agcttgtgat
     1201 ttgacttaac ttcgcctcct atcacaacct tatttcctgc gacaaaaacc tcactcgcca
     1261 cccttgaatt tttgtcattt ttcaagagta tatccactat cgtatcagcg attatatcag
     1321 cgcacttgtc tggatgacct gcacttacga cttctgaagt gaatagatac ataaaaagtc
     1381 ctttcattta aaatgaacca caattgtatc caaataaact tatcaaagct tgataaatta
     1441 aaaatttact aaaattaagc aaaagttagt taaaatcaac ttctgatata aaaaatattt
     1501 aaaaggtttt tatgttttct aaaatcattc aaagctacgc taaaggcaac ctcatagttc
     1561 aaatttgtat aggtatagta ctaggaatac tcataggcat tagctctaaa gaaatatctg
     1621 aaattgcaaa tttactcgga atacttttta caagtgcctt aaaagctatc gctcctatgc
     1681 ttgtttttat tttaatttta acctcaattt gcactaaaga tttttctcaa agtggtgcta
     1741 agatcaaaaa tattattatt ttgtatatag taggcacctt tcttgcttca gcttgtgcgg
     1801 ttcttgctaa ttttttcttc cctgtaaagc ttgttttaga tggagttcaa accgctacaa
     1861 actcatctcc aacccacatg agtgagattt tcaaagatct tttatttaaa attgtcgata
     1921 atcctataaa tgctctatca agtggaaatt atttaggaat tttaacttgg gcaatagccg
     1981 gaggtatagc attaaaacac tgttctaacg aagcaaaaca agtttttata gatatcaatg
     2041 aaggggtttt aaaaattgtt aaatttatag taaaacttgc tccttttgga atttttggac
     2101 ttgtggctaa ttctgtagca caaacaggag cgcaaggttt actaagttat gtaaaacttt
     2161 taattttact tgtaactact atgctttttg ttacttttgt tattaatgcc ttaatagtct
     2221 ttttttatac aagaaaaaat ccttttcctt tgatttttat ctgcttaagg cacagtgcat
     2281 tttttgcttt ttttacaaga agttcggcag caaatattcc tgtaaatatg gcactttgtg
     2341 ccaaacttgg catagataaa gaattttatg gcatttctat acctttagga gctactatca
     2401 acatggcagg agcggcagtt actatagcta ttttaagcct tactgcagcc aataccgttg
     2461 gtatagaaat cagtctttta caagcctttt tattaagcat tattgctacc tttgcagctt
     2521 gtggggctag cggagttgcg ggcggatctt tactgcttat acctttggct tgttctttat
     2581 ttaatataga ctatgatatt gctatgaagg tagttgccat aggttttatt ataggggtta
     2641 ttcaagatag tgttgaaact gctttaaata gttctacaga tgttcttttt acagcaattt
     2701 gttctaaaaa tgaattaaat tacaatatca aataaggtaa aaacatgcgt catctcatca
     2761 ctacaaaaga ttttaataaa gtcgaaatta tggagctttt taaagaagca agtgatttct
     2821 tagatgaaaa acctagaact tttcttaaag gaaaaagtat cacgacaatt ttttttgaaa
     2881 actctacacg caccctttca tcttttgaaa gcgctgcaag aagattaggc gctagggttt
     2941 tacgccttga tgtttcaaga tcaagctcta gcaaaggaga aactctttat gatactgctg
     3001 ctaatttaga tgccatgagt cctaatgcta ttgttgtaag acacgcaaac tcaggagttc
     3061 ccttgatatt agcaaagcat atacattgtc cagttgttaa tggaggagat ggaaaacacg
     3121 cccatcctac tcaagctttg ctagatttat ttactattta taatcatttt caaggtgatg
     3181 tcgaaggtaa gaaaatttgc atcgtaggtg atattaaaaa ttcccgcgtt gcagcgtcta
     3241 atatagaact tttaagcaga tttaatcttg atattaccct agtagctcca ccgcatttta
     3301 tgcctaatac ccatcttaaa aaacattata agcttgatga gaatatcata gcaaattcag
     3361 atattatcat gagtcttaga acacaaacag aaagacataa taaaaccgtt tacgcttcac
     3421 ttaaagacta tgcaaatgat ttttgtattc aaaaaagctt agtaaaagat aaaaagctta
     3481 ttttactaca tccaggccct gtaaatcgca atattgacat aagcgatgaa atgatgagcg
     3541 atgaaagaac tttagtttta aaacaagtta aaaatggagt ggccattaga atggctgttc
     3601 ttaaaaaact catattagaa aatgaaggat aaaaaatgtt agaatgggat ttaagtgctt
     3661 tattccacga taaagaagca ttacaaaatt ttacacaaga tcaaatccaa caaagtttaa
     3721 atttcaaaaa aaactatgaa aataaacttt atgcattaaa tgctaatgag tttttacaag
     3781 ctttaaaaga ttatgaaaat ttaaatcaag cccttggcaa aatcatgact tatgcttatt
     3841 tactttttgc taaaaacact caaaatggtt ctttttatgc acaatacgaa gaagaatgca
     3901 aaaaaataga agaaaattta ctctttttcg agcttgaatt ttgcgagtta gctcctgaga
     3961 aaagtcaaga atttacaact ttttgcaaag attatgattt ttatctttct aatttattgc
     4021 aaaacaaacg ctataatctt agcaaaaacg aagaacgcat tatgctctat ctttcaaata
     4081 caggtgcaaa tgcttttagt agactttttg atgaaagtat gagtgcttta aagatccctt
     4141 ttgaaggtaa aaaacttagc gaagaagaaa ttctaagcaa aatgtatgat gaagatagaa
     4201 aaacacgcaa aaaagctgct aaaaaattca gtaaagtttt gcaaaaaaat agcagacttt
     4261 taagttttat tatcaatatg ataaaaacag aaagaaaaaa tataagctta ttaagaggtt
     4321 atgaaaatgc tgaaatttca agacatatca gtaatcaaat ttcacaaaaa agcgttgatt
     4381 ctttgatagc aagcgcacaa aaacatttta acttagtatc gcaattttac aaaagaaaaa
     4441 aacaaatttt aggctatgat gagcttaaag actacgacag atatgcaccc ataggaaaag
     4501 aagcaagttt tgattttaaa acaagtaaaa atattgtttt agaggcattt caagcttttt
     4561 ctccgcaatt ttatgatata gcaaaaaatg cttttaatca aggctggatt gatgtttatc
     4621 cacaagaaaa taaacaaggg ggtgcttttt cacattctgc aacttctgat gcgcatcctt
     4681 ttgttttatt aaactacacc gataaaaggc gtgatctttt tacacttgca catgaattag
     4741 gacatactat ccatcaaaaa ctttcttaca atgtaagcta cttaaatcaa aacacacctt
     4801 taaccaccgc agaaacagct tcagtttttg ctgaaatgct ggtatttgat tttattaaag
     4861 ataagttaaa aaaagaagaa ctcctatctt tatatgcaaa taaaatcgaa gatatttttg
     4921 caacttttta tagacaaatt aattttactt gttttgaaag acgcttacat gctcaagaaa
     4981 atgaacttag caccgaagaa atcaataaaa tttggatgga agaatctcaa aagatgtttc
     5041 aagacagcgt aaaacttaca aaaaattatg cttcttggtg gagttatatt cctcatttta
     5101 tccattctcc tttttactgc tatgcttatg cttatgcaca acttttagtt ttagctcttt
     5161 atggacttta caaaagtaaa aaatgtgaaa attttaaaga actttatatc aaaatgcttt
     5221 ctttaggtgg aagcgtgagt ccaaaagaac tagtaggaat gtttggcttt gatatagaag
     5281 atgaaaattt ttgggaaata ggcataaaag aaattcaaaa actcatcaat gaatttatgg
     5341 agttacaatc atgctagaaa caatcttaaa aaatgaaaat tttatccata ccatgcaaaa
     5401 gcattgttat gaagttattt cacaccttat agaagaaaat atagaatttt ccatagttgc
     5461 aaatacaaat ttcatagatt ttaaccctga acttcccaaa gagcttgatg ttaaacaaaa
     5521 tccttatgct ctttttgctc ttggaggata cacctttgaa tccatacaac taaataaaga
     5581 tttcattcaa tttcacgcag gttttggaaa tgatgatttt gatagttttg taaaggttga
     5641 tttaggagct atcacgcaaa ttcaaataga aaataacatt ttatttgtta attttagcct
     5701 ttataaacgc gaagatagta aaaatttaca aaaatctaaa aatatatttt taaataatcc
     5761 aaaaaataaa gatattttca aaaaatgaat ctatttgaag atttaaatga tagtcaaaaa
     5821 caggcagtaa gccacattga tggagctatg cttatcctag cgggtgcagg tagtggaaaa
     5881 accaaaacta ttaccactcg tcttgcttat cttatcggtg aagtaggcat cccctcgcat
     5941 aacactctta ctcttacttt tacaaataaa gcagctagtg ttatgcgtca tagagcatta
     6001 aattttctac aaggcaatca caatcccttg ctttgcacct ttcataaatt tggactttta
     6061 tttttaaaac tccattttga aagattggag cgtaaaaata gttttattgt tatcgataca
     6121 gatgatacaa aaaaaataat taaagactta atccatgata aaaacaaaga taatgtctat
     6181 gatattatca aatacatatc ttattgcaaa aatgaaggca aaagagtaag caatgtcttt
     6241 gaagatttaa atttactaaa agaacataat tttgaaaaat atcaaaatga atacaaattt
     6301 gccaactatt accgtgctta tgaagaatac ttattaaagc aaaattttgt agattttgat
     6361 gatcttttat tgctaagcaa tctcatttta gaaaatgata taaattttgc caaagaacaa
     6421 agcttacttt ataattacat tacagttgat gagtatcaag atactaatac cttgcaatat
     6481 aaaattctaa aaaatctatg ttgtatgcat gaaaatatca cagttgttgg tgatgatgat
     6541 caaagtattt atagttggcg tggagcaaaa attgaaaata ttttaaattt tcaaaacgat
     6601 tttaaaaatg ttaaacttgt aaaacttgaa caaaactatc gttcagtagg gactatttta
     6661 caagcagcaa ataatctcat atctcacaat gagcaacgac ttggaaaaac tttaatctgc
     6721 actaaagata ctggggaaaa tattaaaata ttaaaaaacg aaaacgaaaa agatgaaggt
     6781 ttatatatcg ctcaagaagt gaaaaaattg ctaaattctg gagtagaagc taaagagatc
     6841 gccgttttat ttcgagttaa tgcactatca agagcaatag aagaagcatt tatgaaggaa
     6901 aaaatttctt ataaactgct tagcggtatg cgtttttatg agagattaga aataaaagat
     6961 ttaatctcgt atcttagact tatcttaaat ccaaatgatg atttgtcgtt taggcgtatt
     7021 attaatcgcc ctaaaagatc cataggagaa aaagccctaa aaaatttaga agaatatgca
     7081 aaaaaacgtc aaatttcact ttttgatgcc ttatgtgaaa gcgatggcgg tgtaggaatt
     7141 ttaacaacaa aaaaagcaca aaatgaagca aatattttta tacaaaatat tcacactcta
     7201 aaaagctacg ataatgcaaa aaaagttttt gacaatatag aagaattatt taaaatcaaa
     7261 gattattttt cagagcaaga tgatggagat gaaagaatca gaaatcttga tgagttttat
     7321 gctaatctaa gagaaaaact caaagaagat cccgaagctt ctttagaaga tctacttagt
     7381 gaaatttctt tattaagtga tcaagataat ttagatgaag aatgtgtttg cttgatgagt
     7441 attcatgcta gcaaaggttt ggaatttgat tatgttttta taataggctt tgatgaagga
     7501 ttttttcctt taaatagcga agaaaatctc gaagaagaac gccgtcttgc ttatgttgcc
     7561 atcactcgcg ccaagaaatt tctcacaata agtgttgcaa attctcgttt ttatcatggt
     7621 tcaagagcaa atatcaatcc tagtcgcttc ttagaagaaa gtaaattaat caatgaaaaa
     7681 tcaaaaaatc aaaatataca aaaaactagt ttttgcaaag gagatctagt taaacataaa
     7741 atttttggca ttggcagggt tgttgaagtt aataaaagcg gaaaagagga aaagcttaat
     7801 attaattttg gtggtataat gcgtgtaatc atggcaagct ttgtggaaaa agcagtatga
     7861 ataagatctt tgcagccttt aaaccaagag gtttgagttc taatgccttt ttaagtactt
     7921 taaagaaaaa atataaaaat aaaaaagcag gatattctgg cactcttgat cctttcgcca
     7981 aaggggtttt aatcgttgcg tttggacaat acacaaaact tttccgattt ttaaaaaaaa
     8041 ctccaaaaac ctataaagct actttatggc ttggagttta ctccttaagt cttgatgatc
     8101 aaaatataaa agaaattaaa aatataaaag aatttgatct tgcaaattta caacaaatca
     8161 ttgatcaaat gcaaggaatt atctcctata caccgccgca atttagcgcc aaaagaatca
     8221 atggaactcg cgcctatgaa cttgcaaaaa aaggtataga agcaaattta aaaccttgcc
     8281 aaatggaagt atttgattgc aagattttaa gctataatca tcctttttta aatatcgaaa
     8341 tcacagtcag tgaaggtgct tatataagat cttattgcga actttttgct agaaaactag
     8401 gtattaatgc gactttaagc tctttagagc gcattaaaga aggcaaattt gtttataata
     8461 atgagaaaag cttaaatgtg ttaaaataca ttaacctaaa gccaaatttt atcaaggatt
     8521 taaataaact cgaaaatggt gctaaaattt ttgtcgaaga attaaaattt catgatgaag
     8581 gagattatta tattgaaaca gaaaaatatt ttagcataat taatattaaa gaaaatacag
     8641 taaaatatct tctaaataag gttgaaaaat gttaatatta tcaagaaaag aaaatgaaag
     8701 tataattatc ggagaaggta tagaaatcaa agtcgttcaa acagggaaag gatatgccaa
     8761 aataggcata gaagctccaa aatcccttat gatacttaga aaagaacttg ttcaacaagt
     8821 aaaggatgaa aatttgcatt ctgttgttca gaatgatatt aaacttgatg acttaagcaa
     8881 aaaactaatc aaatgaaagc ttacgctaaa gcaaatattt ttttaaaact taccggtttt
     8941 gactcaagaa aatatcatct tttagaatca cgatttatac ttttaaaaga tctttttgat
     9001 gagcttgagc ttgttgataa agaatcagac tctaaaaaag aatttgaaat cattagtaat
     9061 tttaaatgcg aaaataatat tattcaaaag gcttacttac tactttctaa aagatataac
     9121 aacgaattaa aagaattatt tagcaaaaaa agcctaaaac tcacaaaaaa tatcccagta
     9181 tgtgctggac ttggcggtgg aagtagcgat tgtgcgagtt ttttactact aatgaatgaa
     9241 accctaaatt taaaattaaa cctacaagaa cttataaatt taagcataca actaggaagc
     9301 gatattgcct tttttttaag tggctttcac tctgctaatg taagtggctg tggcgaaatt
     9361 atagaagaat ttgaagatga catacctaat ttaaaatgga cttttccaca aatatcttgc
     9421 caaactaaag ctgtttatga tgaatttgat agaggaatat ttgactttca aaaaaacaat
     9481 aatcaagcgc aaatctacaa aaaactcagc acaaaagagt tgttacaaaa ttttaaaaac
     9541 aaagaattaa atgatttatt tactccttgt gcaactttat atcctaaaat gaagtcttac
     9601 ttacaagaag atttttttct aagcggtagc ggtagtagtg tttttaaggt tgatcgatga
     9661 aaattattgc gagaaataaa aaagctttat ttgattatag catcatagaa cgctttgaag
     9721 ccggaattgt ccttaaagga agtgaagttg tagccttaag agcaggaaga gcaaatctta
     9781 aagactcttt tgttcgcatt ataaaaaatg agattttttt acttaattct catatttcat
     9841 tgcttcatac tacacattct ttctataaac acgaagaaag aggtgctaga aagcttttaa
     9901 tgcatagaaa gcaaattgat aaattattag gtaaagtaag tatagaagga tatactattg
     9961 ttgcattaga tctttatttt aacacaaaaa ataaagtaaa agccactctt gctttagcta
    10021 aagggaaaaa tttgcacgac aagcgtgaaa ctttaaagaa aaagcaagcc gatttagaag
    10081 ctagagctgc tatgaaaaat tataaataaa ggaaattaaa tgaaaaaaat tttaacccta
    10141 tttttaataa gtttagcatt ttttcttaat gcttgctcca aagaagaaga aattcaaaat
    10201 gattttatgt ttgaagagta tcacaaagga gataaaatag tattaaatag tgtaaatggt
    10261 ggaagcaaaa ctttaataag aacagataaa ggttttgtgg tagaaggaga ggaaggaaaa
    10321 gttctaatgt ttgatttttt tggcactttt tgcaccccat gcaaagaaga agctttagat
    10381 cttagcaaac tttggaaaaa taattctagc aaatttatca ttataggact tacacatttt
    10441 gaagatgtta gcgatgaaac agttaaaaaa ttcgcggatg attatggtgc ttactatttt
    10501 ctaagcaatg gcggttctaa tgatcgtatt attgctcaaa ttttaaaaga tatagactat
    10561 caaaatatgg agcaacttcc ttttaaagtt gttttaaaaa atggaattta tcaaaaaata
    10621 agcgattact ggaataataa tgctccaaca aatttttatc ttggcaaaat tccaacagaa
    10681 ctcatgcaag aagatttaaa taaaatctac aaaggaaaat aatgccaaaa acccaaactc
    10741 tagagcagac aaaacttagt gaaccaaaaa tgtataaagt tatactctta aatgatgatg
    10801 taacaaccat ggattttgtt atagaaattt tgatgaatat ttttcatcaa aaccttgaaa
    10861 aagcaagtca aacaatgtta gaaattcatc acaacggttc tggaatttgt ggcatttaca
    10921 ctcaagaaat agctctttca aaacaaaaaa aagttataga tgcggctaaa cttgctaatt
    10981 ttccactaca agcaaaggta gaagaagaat gaaataccaa gaaaatttac aaaaatatct
    11041 tgataatgcc aaaaatctaa gcttaataaa ccaccatgaa tttgttacct gtgagcatgt
    11101 actgtttgca ttactaaaac taagcattga ttttaaggat atatttgaag aattttcaga
    11161 tggagatctt gaacttctag aaactgaatt aaaaaattac atttctcaaa acaatcaagt
    11221 tattaaacaa gaaatagaac ctacaatatc tgttgtttta gatgaaatct tactttcatc
    11281 taaaaataaa aataatgaaa ttaaaattat agatttttta gaaaagctca tacaggattc
    11341 aagaagttat tctagctatc tcttaaaaaa acacaacata aatcttacca aaattcaaga
    11401 acttcaaaat catgaaaata tacaaaattt aagcaaccac acaagtaatt taacactttt
    11461 ggctcaaaat ggcaagattg atcctttaat aggaagaaaa tttgaacttg aaagaatgat
    11521 gcaaattctt tcacgtcgca agaaaaataa tcctatttta gtaggagaag caggagttgg
    11581 caaaacggcc attgtagaag gattagcatt ggctattgcg gaaaaaaagg tgcctaaaaa
    11641 cttacaaaat gcaaaaattt ttagtcttga tatggctagt atacttgcgg gaacaaaata
    11701 ccgtggagat tttgagaaaa gaattaaaga aattttaaat gaacttgaga aaatacccaa
    11761 tgctatttta tttattgatg aaattcacac tatagtagga gctggaagca caggagaatc
    11821 tcatactgat ttttccaatc ttttaaaacc agctctaagt aatggaactt taaaatgcat
    11881 aggtgcaaca acttttatgg aatataaaaa tacttttgat aaaaataaac ctctaagtcg
    11941 ccgttttgct aaaataaatg tagatgaacc aagccaagaa gaaagtttgc aaattcttaa
    12001 aggattaaaa aacaaatatg aagaatttca tcatataaaa ttaaacgatg aaattcttca
    12061 atatgctgta atttggggta aaaaattttt taatgataaa tttttacctg attgcgctat
    12121 agatctgatc gatgaacttg gcgcttcttt tgctttaaat ccaaaagcta aaaaaaatgc
    12181 aaatttaaaa gatttagaaa atgttttagc aaaaatgacc caccatcaca aaatgtttga
    12241 attcgatcaa aataaagctt taatgaattt aaaaacaaat ttaaaagcaa aaatttttgg
    12301 ccaagatgaa gttatagata gccttgtttc atcacttaag caaagtttcg caggatttaa
    12361 aaattccaat acaccacgcg gagtgttttt gtttactgga tcaagtggag ttggaaaaac
    12421 agaattttgc aaagctttag ctgaattttt aggtttaaat ttagagcgct ttgatatgag
    12481 cgaatatgca gaaaaacatg ctataagtaa actaatagga tctccagctg gatatatagg
    12541 ttttgaagag ggtggacttt taagcaatgc tattcgcaaa aatcctttca gtcttgttct
    12601 ttttgatgaa atagaaaagg ctcatcctga tttaagcaat acctttttac agatttttga
    12661 caatgctgaa ctcaccgaca atagcggtct taaagtagat tttaaaaata caatcattat
    12721 tatgacatct aatctaggac ttaaagaaag caatgagctt ggttttttaa gtaaaaatga
    12781 agaaaaaagt aatcgtgcta tcaaagattt ttttgctcca gaatttatta atcgcattga
    12841 taaaatttta cattttaatg atttaaacga tgctatactt gttaaaatta tcgaaaaaga
    12901 acttgatgaa atttctaaaa atttaaataa tataaaatta tcagtggatg ataaagtcaa
    12961 aatttattta gctaaaaaag cctataataa agaatttgga gtaaggcttt taaaacgcat
    13021 aatttctgag gaaataggag aaaaaatcag tgatgaaatt ttattcggga agcttaaaaa
    13081 aggcggtata gctaaaatca aacttggtaa aaatggaaag ctcgaattta tattctaaat
    13141 tactcaatgc acctaaaaat gctcctgtat ttttaagtca aaatttagaa gctgatttta
    13201 ttgtaaaagc ttatactttt ggtctattcc catggacaag taaacctgta acttggtggt
    13261 gtccagatcc tagatgcatt ttaattccaa atcaaattca catccaaaaa aatatgaaaa
    13321 aatttattaa tctctatcaa attaaacttg attatgattt tttaaaatta attacattat
    13381 gtcgcgatac acgctctcaa agctggatag atgatgaatt tattaccact tattataagt
    13441 tatttaccca aggctatgcg catagccttg aactttatga aaataatgaa cttataggtg
    13501 gaatttatgg tttaatttta ggcaaggttt tctttggtga aagcatggta agcattaaaa
    13561 aaaatgcatc taaagttgcc atgattaaac tttgtgattt attaaaacct tatgatttta
    13621 tcatagattg tcaagtttat aaccaacatt tagaatttat gggtgctcat aatatttcta
    13681 ggaaagaatt tttaaatatt ttaaaagaaa aatgcaatca agaaagtggt tttaaaaatt
    13741 ttaaagattt aattacttaa aaaataagcg tgaaaatcac gcttatgaca ttgctttagc
    13801 aacttcagca gagctttcac gaattttctc catacattct cttgcttctt ttgcaagttc
    13861 aacactctga ttaacatcct ctaaaccgct tttaatactc tcaaccactt gtgatgtaac
    13921 attacgaata gaattaatcg tagtggtaat ttcattaact gaatgccctg ttctttcagc
    13981 taaatttctt acttcatcag caacaacagc aaaacctcta ccatgttcac cagcacgtgc
    14041 tgcctcaata gcagcattta aagcaagcag attagtctga tcagcaatat cactaatagt
    14101 ctgaataata gatttaattt catctgattg ttgatttaat gaggaaacaa gatttgaact
    14161 ttgagacatc atatcagcaa tattctgaac atttgaaaca gtgttttcaa ttacacgatc
    14221 tccatcttga gtaagattat catttttttc tgcaagttcg cttatgaggc gaagtttttc
    14281 ttgatctttt ttaacttgtt cgcttatatc tgtagcaaat ttaataacct tgtaaatttt
    14341 tccatcatca tttttaaccg gattataact tgcttcaagg tatacttttt tattatttct
    14401 tccgtatctt atatatttac ctgattgaaa tttgccctct cttaaatctt cccaaaattg
    14461 aacatagtcc ttagagtgtc tataattaga atcacagaac atactatgat gctttccttt
    14521 aatctcatca atattaaaat ccatagttct taaaaaattt tcattagccg taataatagt
    14581 cccatcaggt ttaaattcaa taatagccat agaacgatta gcagcagcaa tagtatttct
    14641 aagatcaagc atttcataat gtctttgagt tatatcattg gcaaatttaa taattttata
    14701 aacatgacca ttattatcac taattggaag ataatttgct tctaaataaa catctatccc
    14761 tcccttagct atacgtctaa aaagaccact tctggctttt ccatctctta aatctttcca
    14821 aaaatcacta tatgccgaag aattaacaac ttcaggcaaa caaaacatac tatgatgctt
    14881 gcccttgatc tctgaaaggg agtatttcat agttgttaaa aaattttgat ttgcctctaa
    14941 aataacgcca tcggtggtaa attcaattac cgccatggta ttcccaatag atcttaaaat
    15001 atctcctaaa ccattacact ttttttcaag ttgttcaatt atttcagtat tatttttctt
    15061 agcaccaaac ataaaactca cctttttaat aataaattat tttaaaatta tatcatattt
    15121 atatagtatt atttacttaa aattatatta atttataagt taaatatatc ctttaaacct
    15181 acaataatca tcttaaaccc catagcagca ataaatactt gtgctatacg agaaaaaaca
    15241 tgtaaaatca attttccaac tattttttct atagtagctg caaaatgaaa aagtataaac
    15301 ataaaaataa aagctatcat tactccgcca agagcaacat caagcccacc atcttcggct
    15361 ataacgataa cactagctaa agttccaggc ccaacaagca taggaaatgc cataggtatt
    15421 aaactctgtc ttaaaatttc cttatcatcc atatcctgat aagaactaaa atccttagtt
    15481 gcaatttttg ttgaaaaaag taaattttta atagccatta taataagaac caaaccacca
    15541 gaaaccctta aatcatctaa tgaaacccta aaaatatagt tcataaacaa aggtcctgat
    15601 aataaaaata ccaaaactat agtaaaagct gtatagagaa tagttctaaa aagttttttt
    15661 cgaagcatta aaggcaatcc atcactcata gccaaaaatt gagttaaatt accaaaagga
    15721 tttaatatgg caagtaaagt aattgcagca aaaaacatca aataaagctc agaacccata
    15781 ctagaaaaca ctatcaatcc ttagttttta caaattccaa agaaatagaa tttacacaat
    15841 gtcttacatt tttagcagaa aatccttctc cttcaaaaac atgacctaaa tgtccattgc
    15901 agtttgcaca tacaatctcg gttctaatcc catctttatc aggaattctt ttaacagccc
    15961 cttttatttc atcatcaaag ctaggccacc cacaacctga tttaaattta tcttcggatt
    16021 tataaagcga agctccacat tgcttgcatt gatagattcc tttttcataa aaatcattat
    16081 atttccca
//
LOCUS       DAEDTT010000031        16081 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.031, whole genome shotgun sequence.
ACCESSION   DAEDTT010000031 DAEDTT010000000
VERSION     DAEDTT010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16081
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.031"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            197..1261
                     /gene="mqnE"
                     /locus_tag="KLC54_000712"
     CDS             197..1261
                     /gene="mqnE"
                     /locus_tag="KLC54_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HBD9177105.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKGKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDNSFIQTDKIMDSEEILKTIAIARLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            1271..2590
                     /locus_tag="KLC54_000713"
     CDS             1271..2590
                     /locus_tag="KLC54_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HBD9177106.1"
                     /translation="MDFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMP
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFIFGVLVSSIIAWIFHLDNASFPVQIF
                     SLPNFSMENGLGAIFLQLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPILVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            2604..3047
                     /locus_tag="KLC54_000714"
     CDS             2604..3047
                     /locus_tag="KLC54_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HBD9177107.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKKDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDDTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKIATIFYKKTALLKPDFKVKEATEWVDFYWDINLD"
     gene            3092..3790
                     /locus_tag="KLC54_000715"
     CDS             3092..3790
                     /locus_tag="KLC54_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HBD9177108.1"
                     /translation="MRIKFISFILIFFTIFAFAKEQNLDDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNAITPEFIRLGARNFFDNLLAPLRFVGNVLQFKFEE
                     AGEEFKRFAANTIMGFGGLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLTLPATWYTSFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
     gene            3800..4369
                     /locus_tag="KLC54_000716"
     CDS             3800..4369
                     /locus_tag="KLC54_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HBD9177109.1"
                     /translation="MKKIFLILTLFFNAFALQLDEISSTMQKNIDASLKLLQDSKEDK
                     KQAANGIFKLFDSIIDYKLMAKLSLSKNYSKLTPKEQEKFTTAFETSLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSTVVDGEEKNIIFKFYNDNNNWLIYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            4369..6840
                     /locus_tag="KLC54_000717"
     CDS             4369..6840
                     /locus_tag="KLC54_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HBD9177110.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKAQNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNNLIEKRDLASDEKEKDQIRLAIKEHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMIAYIKSDLVLYGVSLVFLLGLALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYVALVLIITLSVVVHLITHFIESTQNHPK
                     AKVERIVLETLLAKANPSLYAIVTTMIGFFSLILSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYGISVLAIILALIGIL
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNTSDTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSVLSLNSLLTLGENINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNEFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMVSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKFPNQYKEHILKQ"
     gene            complement(6871..7473)
                     /gene="rdgB"
                     /locus_tag="KLC54_000718"
     CDS             complement(6871..7473)
                     /gene="rdgB"
                     /locus_tag="KLC54_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HBD9177111.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSDKGDDKSNR
                     DKLVNEMIKKGFNQSRAHYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            7640..8941
                     /locus_tag="KLC54_000719"
     CDS             7640..8941
                     /locus_tag="KLC54_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD9177112.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKRGLAKQILLLGIVFF
                     ILSYLFFAFSNSIVFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDALNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     SFSTFSENLGVVDIYKNSKNLVVKFDSKLINKEELEGKIKI"
     gene            complement(8944..10617)
                     /locus_tag="KLC54_000720"
     CDS             complement(8944..10617)
                     /locus_tag="KLC54_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HBD9177113.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEVLVCNDKNQKAQIYA
                     PEINFYLKNSQDEILEQSKNVLTLYKARASVYDLGLDLEQSKEVQNRLILADSDTQTV
                     EFLKEHGFKVIALSSVEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAEDLSAVRK
                     DFTRQSGCYNLLNFENLEVLLEFLQSKSPKYHYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDEKKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLALLQNSGANLVFYTDFVS
                     RGSNEAIVLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQEMIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDELFACIECGKE
                     FATKKAVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMGFAGQN"
     gene            10695..12017
                     /locus_tag="KLC54_000721"
     CDS             10695..12017
                     /locus_tag="KLC54_000721"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HBD9177114.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVAKLKENFSQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKDIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYNKEIIS
                     SRGELVEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAISENTALILKTHKSNF
                     ALMGFHSEVNIKDLHELAKEKGLLSYYDLGSGWCENLNEKLIKNEPKIKKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEKKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILIINQMENL"
     gene            12014..13819
                     /gene="selB"
                     /locus_tag="KLC54_000722"
     CDS             12014..13819
                     /gene="selB"
                     /locus_tag="KLC54_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HBD9177115.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSICLFVVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENNEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVIGGG
                     KVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLSHQKA
                     LKLAKELNQVFVDEKNLNVYHLQSLEEIKNFIKFILEKNPYAMLSAHSLALRITWASE
                     NFCELGLKEMSNLLDFQNGIYFKKGIDFEKLQEKNNNQMYEILKKQGIKPEAPYNLYD
                     FLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQECLNLLKNQSLDVQSMK
                     EYFNLSRKYAIAYLEYLDKFPQVNKEAEKRFLTNI"
     gene            13868..14578
                     /locus_tag="KLC54_000723"
     CDS             13868..14578
                     /locus_tag="KLC54_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HBD9177116.1"
                     /translation="MKKLSLILACSASLFAASNSEISDFYSKSIKAQFPNATVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDDELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDTELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            14584..15114
                     /locus_tag="KLC54_000724"
     CDS             14584..15114
                     /locus_tag="KLC54_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177117.1"
                     /translation="MSKITLILSFFIALFMSACTNATFIQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLRTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLENKIINQIVSFFYF"
     gene            complement(15159..15650)
                     /gene="fldA"
                     /locus_tag="KLC54_000725"
     CDS             complement(15159..15650)
                     /gene="fldA"
                     /locus_tag="KLC54_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HBD9177118.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVFNISDIDAAKMNSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWVEQIKP
                     YFA"
     gene            complement(15650..>16081)
                     /locus_tag="KLC54_000726"
     CDS             complement(15650..>16081)
                     /locus_tag="KLC54_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177119.1"
                     /translation="RKSLIFNTKISKNIDLLRLLRIYLYGICFDAQILFSSYVYDKVS
                     FQNNGKNIDQDGDLIIIDKKFAILPLCKEINAHNLKIENEIHGLLNLIKENNFEKFYI
                     VCPRNKNFTHFIEIKHFLCDLNKTMLKLVPYKISNQIIRRK"
BASE COUNT         5741 a         2391 c         2384 g         5565 t
ORIGIN      
        1 ttgggtatag gaactaagat tttttttaaa aatttctaat tctttattta acaaaatttc
       61 tactctcttt aaattttaat attttaataa taatcttaac aaaaatatct tttattttgg
      121 ctttttctat aaactctttt tcagtaagca aaaattataa tgctttattt aaaaacagca
      181 aaagagtaaa attaaaatga aaaatttaat taccaaacta gaaaatgaag aaagattaaa
      241 ccaagaagaa gccaatgcac tttgggatct agatcttttt accttaggca aatacgctca
      301 caaaaaacgc accaaacttc atggaaaaaa agtttatttt aatatcaatc gtcatatcaa
      361 cccaactaat atctgtgcag atacctgtaa attttgcgcc ttttcagcac accgtaaaaa
      421 tcctaatcct tatttgatga ctcatgaaga gattatgaaa attgtcgatg aaaccgtaaa
      481 acgagaaacc aaagaagtac atatcgtttc agctcacaac aaagatacaa cttggcaatg
      541 gtatttagaa atttttaaaa tgataaaaga aaaatatcct aatcttcatg taaaagctat
      601 gactgctgct gagattgatt ttttacatcg tcgttttaaa atgagctatg aagaagtgat
      661 agaaaaaatg cttgaatacg gcgttgattc catgccaggc ggtggggctg aaatttttga
      721 tgaagaagtg cgtaagaaaa tttgtcatgg aaaagttagc agtgaaaatt ggcttaaaat
      781 tcataaactt tggcatgaaa aaggcaaaca aagtaatgct accatgcttt ttgggcatat
      841 agaagaaaga catcacagga tcgatcatat gttaagactg cgtgatcttc aagatcaaac
      901 cggtggattt aatgctttta tccctctagt ttggcaaagg gataatagct ttatacaaac
      961 tgataaaatc atggatagtg aagaaatttt aaaaaccatt gccattgctc gtttagtgct
     1021 tgataatatt aaaaatatca aagcttactg ggcaacaatg actttaaatt tagccatggt
     1081 agcacaagaa tttggagcta atgatttaga cggtaccata gaaaaagaaa gcatacaaag
     1141 tgcaggtggt gcaaaatctg ctaaaggcac aagtttaaaa acttttatcg atatgataaa
     1201 aacttcaaat cttattcctg tagaacgcga tagtttatat aacgagctaa aaacctacta
     1261 aggagaaaaa atggactttt ttaaactcaa agaaaacaat acgagtttta aaaccgaagt
     1321 tatagcaggg cttactactt ttttggctat ggtttacatt atccccgtaa attctagcat
     1381 agtaggaaat acaggaatgc ccatagaagc tttaatcacc gcaacagctt taatcaccat
     1441 agttgcaagt gcttttaatg ctttttttgc caatactcct gtagctatga gtgtaggaat
     1501 gggtttaaat gcttatttta cctttgcggt ttgtttaggt caaaacatag cttggcaaag
     1561 tgccttagga gctgttttta tttcaagtat tatttttctc atactttctt ttacgcattt
     1621 tcgcctttgg gtaatccgca atatcccaaa agatttacgc cttgcaattt gtgcgggtat
     1681 aggttgtttt atagcttttt taggcttaag tcaaatgggt gtgatcatgc ataataaaga
     1741 tactttagta agcataggaa atttcaaaag tcctcatgtg ctttttggaa ttttcactct
     1801 agctttaatc atcttttttt gggctataaa acttcgcgga gcttttattt ttggggtatt
     1861 agtaagctct attatcgctt ggattttcca tttagacaat gcaagttttc ctgtgcaaat
     1921 cttttctttg ccaaatttta gcatggaaaa tggcctagga gccatctttt tacaacttga
     1981 tatcaaaagt gccttaaata ttactatgat acctataatt cttacttttt ttatcactca
     2041 actttttgat agtataggaa ctatcacagg tgtgggtgaa agaggaaaga tttttgatga
     2101 tccaaaaaat ggagaaaaaa aactaagcaa aacattaatg gcagatgcaa caggatcggc
     2161 tttaggagct atgacaggca cttctacagt tacagctttt gtagaaagca ctacaggggt
     2221 tgaaagcggg ggaagaactg ggcttacagc tttagttgta gctatttgtt ttgcttttac
     2281 acttttttta ctgccacttt ttaaagccat tcctgcaaac gcaatatacc ccatacttgt
     2341 aatggttgga attttaatgt ttatggaagt taaaaatata gattttaaag atagtgctat
     2401 agctgtagca agctttttta ctattatcat gatgcctttt acttactcca tcaccacagg
     2461 ttttgctttt ggttttcttt cttatttact tgtaagaatt tttaaacgcg aatgggataa
     2521 aatcaatctt ggcattatag ttttaagttt attatctttg ggtaattttt tacttatggc
     2581 actacaataa ataaggatat ataatgatat tttactccta tgaagaattt aaagaagatg
     2641 taaaaattct tgctaaagaa attaaaaaag attttaatcc tgatgcactt ttagctatag
     2701 caagaggagg gatgagtttg gggcattctt tagcagtggc tttaaaaacg cgtcagcttt
     2761 ttgctttaaa ctcaattcat tacgatgata caaaaaaact tgatacaatt gaaattttta
     2821 acattcctga tttaagcaag cacaaaaaaa ttctactcat tgatgatata gtagatagtg
     2881 gagaaagttt agcagaaata aaaaaagttt tgcttgaaaa atttcctcat atagaactta
     2941 aaattgcaac cattttttat aaaaaaactg ctcttttgaa gcctgatttt aaagtaaaag
     3001 aagctactga atgggtggat ttttactggg atataaatct tgattaaaaa tttgctataa
     3061 ttttactttt aaaattttta ggagtttttg cttgagaata aaatttatat cttttatttt
     3121 aatttttttt actatttttg cttttgctaa agaacaaaat ttagatgatt ttgaacaaga
     3181 ataccaaaac tatcaagtaa acgatccact ttcaggatat aacaaagcta tgacaagttt
     3241 taatgtggct ttgtatgatt atggtttgcg tcccgttctt aagggctata acgctatcac
     3301 tcccgaattt ataagattag gggcaagaaa tttctttgat aatttacttg ctcctttgcg
     3361 ttttgtaggc aatgttttgc agtttaaatt tgaagaagcg ggagaagaat ttaaaagatt
     3421 tgctgccaat actattatgg gctttggtgg acttatggat gtggcatcaa aaatgggtct
     3481 taaaaaacat cccgcggact taggaactgt tttggctcac tggggtgtag gaagcggttt
     3541 tcatattgtc ttacctatac tcggccctag taatcttaga gacactctta ctttacctgc
     3601 aacttggtat acaagtttta ccgcttacat tgatcctact tgggcaagta tagctataag
     3661 tgcttatgga tttggtaatg aacttagttt taggcttgat gaaattgatg aaatttatca
     3721 caacacgcct aatttatatc cattcttgcg tgatgcttac gagcaaagac gcaatgaact
     3781 tagcaaataa aggaaattaa tgaaaaaaat atttttaatc ttgactttat tttttaatgc
     3841 ttttgcctta caactagatg aaatttctag cactatgcaa aaaaacattg atgcaagctt
     3901 aaaactttta caagatagta aagaagataa aaaacaagct gctaatggaa tttttaaact
     3961 ttttgatagc ataatagatt ataaactcat ggcaaaactg agtctttcga aaaattattc
     4021 taaattaacc ccaaaagaac aagaaaaatt taccacagcc tttgaaacaa gtcttaaaaa
     4081 aagttttacc gataaactca gtctttataa agatcaggtt ttaaaggtca aaaatggtga
     4141 gttaaaaaat gaaaaacgtt attttttaac cacttctacg gtagtagatg gggaagaaaa
     4201 aaatatcatt ttcaaatttt acaatgataa taacaactgg cttatttatg atgtagatgt
     4261 tttaggtgtg agtatagtac aaacttatag atcacaattt ggagatattt tagccaacca
     4321 aggctttgat gccctacttc aaaaacttga aagtattgtc atagaataat gtttgcaaag
     4381 cttttaaagt tttttatttc tcgtccaaaa agtacttttt ttggaacctt gtttatatgt
     4441 ctgtttttaa gcttttttgc ttttaagctt agtgtagatg caagtgctga aagtttactt
     4501 ttagaagatg atgcagattt aaaaactttt agagaaattt caaaacatta taaaagtgat
     4561 aattttttac ttttagcctt caaaccctat gatgaaaaac ctttttcaaa tgaaaattta
     4621 gccaaattaa aaaaacttca tgaagaatta gaaaaagccc ctttagtaga acgcgttttt
     4681 agtatcatca atgccccttt gcttcaaagt tcgcaaaata cggatttaaa agaactttta
     4741 aaaaatatcc caaatataga aagccaagat ataaaccgca caaaagccca aaatgaaatt
     4801 ttaaatagtc ccttttataa aaataatatc atctcaaaag atggaaaagt aacagggctt
     4861 attatttact taaagcctga tacagtttat aataatctta tagaaaaacg cgatcttgct
     4921 agtgatgaaa aagaaaaaga tcaaattcgt cttgccataa aagaacatca agacaagcaa
     4981 aaagttatca cgaaacaaag tctagatact attaaaagca tagttcgaaa ttatgaaaaa
     5041 aataaagata cgctctacct tggtggcgta agcatgatcg ctgatgatat gatagcttat
     5101 ataaaatctg atcttgtgct ttatggtgtt tctcttgtgt ttttactagg acttgcactt
     5161 tattattttt tccgttcatg gcgttttgtt tttttacctc tttttatttg ttttataagc
     5221 ttaagtgcag ctagcggagt ttttgcactt ttaaattttc aaatcacagt tatttcatca
     5281 aattatgttg ctttggtttt aattatcacc ttaagtgtag ttgttcattt gatcacgcat
     5341 tttatcgaaa gcacccaaaa tcatcccaaa gctaaagttg agcgcatagt gcttgaaacc
     5401 ttactagcca aagcaaatcc tagcctttat gccattgtta caacgatgat aggatttttt
     5461 tctttaatcc tatcaaatat cgaacctatc ataaaacttg gcattatgat gagtataggt
     5521 ataggtttag ctcttatctt tagttatttg tttttagcaa gtatcttagt tcttttaaaa
     5581 ccaaaaaatt atcataaaaa agagtttaaa tttaatcttt tagccttttg cgccaaaacc
     5641 gctcttgatc ctaaaaagcg tcgcatgatt tatggaattt cagttcttgc tataatctta
     5701 gctttaatag gcattttaaa actcagagtt gaaaattctt ttgtcaatta tttcaaagat
     5761 ggtagtgaaa tcaaaaaagg acttttggtt attgataaaa atctaggtgg aaccttgcct
     5821 ttagaagtca tcattcgttt tccaaataat aaaaacgatc aaaatacaag tgatactctt
     5881 gatagttttg aaagtgaatt tgaaaattta gccacacaag aaacttattg gtttgactct
     5941 aaaaaaacac gtattgcaaa aaaagttcat gaatttttag aaaacaaaga atttgtaggc
     6001 tcggttttaa gtcttaatag tcttttaacc ctaggggaaa atatcaacga tggaaaagag
     6061 ttagatgatt ttgcccttgc gtttttaaat gagaatttac ctgctaaatt taaacaagac
     6121 ttgctttcac cttttgtaag catagaaaat aacgagttaa gatttagcat gcgtattgtt
     6181 gattctgatc cgaatttaag acgtaatgag tttttaatag atcttaaaaa acagctcaac
     6241 gagcttgtaa aaaacgatgg agtagaagtt caaatcacag gcataatggt gctttataat
     6301 aatatgctcc aaagtctttt ttcatcgcaa tttgatactc ttatatttgt aattttagct
     6361 atttttatac tttttatcat tgtttttaga gatttaaaat tttcagttgc ggctatattg
     6421 gtaaatgtta ttcctttaag tgtggttttt gctcttatgg ggcttttagg tattcctttg
     6481 gatatgatga gtattactat agctgctatt gctataggca taggtgttga tgatgctata
     6541 cattatattt atcgttttag agaagaaatt aaaaacaaaa gcctagaaga agccattatg
     6601 atttctcacc ttagtatagg ttcagcactt tattatacca caattagcat agttttaggt
     6661 tttagtgtta tggtgagtag caattttatt ccaacaattt attttggaat tttaaccgtt
     6721 tttgtaatga ttttgctttt aagtggaagt ttgttcttat taccaagctt tttaatcact
     6781 atttattcta agaaaaccaa gtttccaaac caatataaag agcatatatt aaaacaataa
     6841 tagctatata ttttaaaaaa tttttcattt ttatccttta tttaaaatct ttaaaatgat
     6901 ttttgcaagc tctaaagctt taaaacgatg agagatatta ttcttctcat ccacgctaag
     6961 ctgggctaag gttttatcaa aaccctttgg aataaaaagg ctatcataac caaaaccatt
     7021 ttcacctttt tctgtatcta ttacttttcc atgcatggtt ccatgcgtac taaattcccc
     7081 catcaaaccc accatagcaa tagcagcaac ataatgtgcc ctgctttgat taaaaccttt
     7141 ttttatcatt tcattgacaa gtttatcacg gttactttta tcatcgccct tatcgctaaa
     7201 tcgagcagaa taaattcctg gatttccttc taaaacatct acacaaatgc cactatcatc
     7261 acttaaagcg ataaaatctt ttttttgctt ttcatccaaa gcattaaaaa ccgctcttgc
     7321 tttaatcaag gcgttttctt taaaagtttt tccattttct tcaatctcaa aaggcattaa
     7381 aacttcatca aaagcataaa tttcaaaatc ttttaaaatt tctttaagtt ctaaaacttt
     7441 atgtttattg ctcgtagcta ggataatctt cataacaaaa gctccaaaat aatatcaaaa
     7501 acaaaaatat gattttataa aatttatcct tgtgcgtagc ttttaaatat caaatgataa
     7561 aacgatgtta atcaatgctt aatccatttc atagtaaaat tatcctaatt taaatttcaa
     7621 atttaatagg aaattgataa tgctaaataa tgtcttaccc ttatctttca tagttggaac
     7681 aagatttttt gggcttttta tagttttgcc agttttaagt ctttatgctt taaaacttga
     7741 aggtgctaat gaatttttag tgggactttt agttggtgtt tacgccttaa cccaaatgat
     7801 tttacaaatg ccttttggga ttttaagtga taaaattggt cgtaaaaaaa ccatgctcat
     7861 tggactgatt atttttataa taggctcttt aatctgctcg tttgcagaaa atatttacac
     7921 catgctttta gggagaatgc tccaaggtgc aggggctatt ggagctgtgg ctacagcaat
     7981 gataagtgat tttatcacag aagaaaatcg tggtaaagcc atggcagtaa tgggttcttt
     8041 tataggactt agttttgcag cttctatggt aatctctcct ttaatgagtg caaaatgggg
     8101 tttatctagc ctttttgatc ttagtgcagc tttgtctctt ttatgtataa ttttacttta
     8161 taccgttgta cctaaagaaa acaaaatcac tcatgaaaat gaaaaaactc ctttttttca
     8221 tcttattaaa caaaaaaatt tagcccttat gaatcttact aatttcatgc aaaaaatgct
     8281 tatgagtata gcatttttaa gtattcctat tattctagta aaacatttag gctttgcttc
     8341 tgataaactt tggattgttt atagcgcttc tatggtggca ggttttatcg ctatgggctt
     8401 tgctggaagt ttaggcgaaa aaagaggttt agctaaacaa attttactct taggaattgt
     8461 ttttttcata ctttcttatc ttttttttgc ttttagtaat tctatagttt tttttatcat
     8521 agcagttgtg atttttttta taggttttaa tttacacgaa cctattatgc aaagttgtgc
     8581 atcaaaattt tgtaaagttc atgaaaaagg tgcagcatta gggttgttta atgcttttgg
     8641 atatggtgga agttttatag gtggtattat cggagggata tttttacatc tagatgcctt
     8701 aaatcttttg gctattattt tagtaatttt agctctaatt tggcttgtgg cattattttt
     8761 cttaaaaaat ccagctgatt ttaaaaacct ttatctacct ttagaaacgc ctttaagttt
     8821 cagtactttt agtgaaaatt taggggttgt agatatttat aaaaactcta aaaatcttgt
     8881 tgttaaattt gatagcaaac ttataaataa agaagaatta gaaggcaaaa ttaagatcta
     8941 aatctaattt tgccccgcaa aacccattgc ttttatcatc acttttgcct tgcaatctgc
     9001 acagcaataa agtgttttga ttttattctc atcattacca aatttaggtt tcattaaatt
     9061 ggctattttt tctacagctt ttttggtggc aaattcttta ccacattcta tacaggcaaa
     9121 aagctcatct tttgccatgg tttgatattc aaaataagaa gctctaaact ccattccact
     9181 acgaaataat tttaaagtat ctttttcagc acaacttaac tcacaatacc cacaagtcgt
     9241 gcaaagagag gcattaaatt tcaaagcatt ttcttgttta tcagcgatta aagctcctac
     9301 attacaggca cccacacaag aaagacaaag cgtacaggtg ttaggattga tttctacctt
     9361 accataacgc aaccattcgc cactttctat actgccaaaa tcttcatttt ttatcatttc
     9421 ttgcattctt ttggcaaaat tttctcttgt agttaaggtg ttgttatgaa aatcatattt
     9481 taaatcttgt atgaattctt gctcttttaa aacattttgc aattcttttt catctttagc
     9541 aacaaaaata gctttttttt gaaattttct ctcaaaaaaa gtatttaaaa gcacaatagc
     9601 ctcattacta ccacgagata caaaatccgt ataaaaaact aaatttgctc cactattttg
     9661 caaaagggct aaaaaatgca tagaagaaag ccatttttca ccctctatca taaagggtaa
     9721 aacatctttt ggtaaagcaa gatttaaatt ttctaaagac atttttttag gaatgattaa
     9781 aattttttta tctttataaa actcacaaag ggtaaaaaaa ctttctcttg gcataggagc
     9841 ataatcaagt gatccgctag gacacacgct aatacatcct ccacaaccca aacaatccac
     9901 ttgagaaaat tctaaatgct ttttttcatc atcttttaaa atcgccacag taggacaaat
     9961 ttcagcacat tttgcacaat gctcactgcg tctttcgtgg tattgacaca cgctagcatt
    10021 atagctaata taagttttat aatgatattt tggacttttg ctttgcaaaa actctaacaa
    10081 tacttcaaga ttttcaaaat ttaaaagatt ataacatcca ctttgtcttg taaaatcttt
    10141 acgcacagcg cttaaatcct cagctttaaa aagtaaaaaa tcaaaatcta tttccacttc
    10201 ttcgccttga tttttaacca cagcacaaag ctcccctaca cttccaaaaa cagctaaaat
    10261 ttctacactg cttaaagcaa taaccttaaa tccatgttct tttaaaaact ctacggtttg
    10321 agtatcgctg tctgctaaaa tcaaacgatt ttgcacttct ttgctttgtt ctaaatcaag
    10381 ccctaaatca taaacactag ctcttgcttt ataaagcgtt aaaacatttt tactttgctc
    10441 taaaatttca tcttgagaat ttttaagata aaaattaatc tcaggggcat aaatttgtgc
    10501 tttttgattt ttatcattgc aaactaatac ttctttatca tttgcctgat ctaaaatttc
    10561 aatagcatcg ggcaaaggga ttaaaacatc attttttata taaacaaaat cttgcattgt
    10621 cttccttaat ctctttaaaa catcatttta taaattctat gttaaaataa ccaaatattt
    10681 tcttaaggct taagatgaac aaatttagaa cttttccaca aattaacact cttattgaag
    10741 atgagagttt aaaatcctat cctttttata tcaaagcatt tttttgtaaa aaagttgtcg
    10801 caaaactaaa agaaaatttt tcccaagatg aaatttctaa agataaacta cttttagaaa
    10861 tcaaaaaaga aatcaaaact ttttaccgca aagatttaca aagtgtgatt aatgcaagcg
    10921 gagtggttat acatacaaac cttggtagaa gtgtaatcca tgaagaactt tatgaagcgt
    10981 gtaaagatat catttgtaat tattctaatg tagagtttga tttagaaaat ggaaaaagag
    11041 gctctcgcta tgctttggtg ctagaaaaac ttaaaatgct ttttgaatgc gaagatgctt
    11101 tagtggtcaa taacaacgct gcggcagttt ttttagtact taattctctt tgttacaata
    11161 aagaaatcat aagctcaaga ggagaacttg tagaaattgg tggcagtttt cgcgtgcctg
    11221 aagtaataaa agctgcaggt gtaaagcttt gcgaagttgg aactagcaac aaaacacact
    11281 taaaagacta tgaacaagct atcagtgaaa ataccgctct aattttaaaa acccacaagt
    11341 ctaatttcgc tcttatgggt tttcacagtg aagtaaatat aaaagatcta catgaactag
    11401 caaaagaaaa agggcttttg agttattatg atctaggttc tggctggtgt gaaaatttaa
    11461 atgaaaaact gattaaaaat gaacctaaaa tcaaaaaact cgtacaagaa tgtgatattt
    11521 taagttttag tggagataaa ctttttggta gtgtgcaagc aggcattata cttggaaaaa
    11581 aagaactcat agaaaaactt aaacaaaatc aacttttaag aatgctaaga gtggataaat
    11641 taactctatc ttttttaaac gaaagcttaa aagcttattt gcaaaaagat tatgaaaaaa
    11701 ttattacctt aaaactttta aatgatgact tatcctttat agaaaaaaaa gctttaagag
    11761 tgcaaaaaga attaaaattt caaacccagc ttaaaaaaag caaaagttta gtaggaggag
    11821 gttctatgcc tgataaaagt ttagatactt atatactgac ttttcaagga gatgctttaa
    11881 aactacaaac tcgatttaga aaagaaaata tcataggacg cattgaaaat gatgaatttg
    11941 ttcttgattt tagaactata cgagaaaatg aacttcaaaa acttattctt ataatcaatc
    12001 aaatggaaaa cttatgaaat ctgttattat aggaaccgca ggacatattg atcatggaaa
    12061 aacttcactc attaaagctt taaatggttt tgaaggcgat agcttaaaag aagaacaaga
    12121 aagacaaatc accattaatt taagtttttc aaatcttaaa ttaaaagata aaaacatttc
    12181 ttttatcgat gttccagggc ataaagattt ggttaaaact atggtaagtg gagcttttgg
    12241 ctttagtatt tgtttatttg tcgtagatat taacgagggt ttaaaagaac aaagtttaga
    12301 acatttagaa attttaaaaa ttcttgatat taaaaatatc attttagtgc ttagcaaatg
    12361 tgatctttgt gaaaatatag agcaaaaaag tgtagaaatt ttagaagagt taaaaaattt
    12421 agattatccc attttaaaag tatttcacac cagtataaaa aataatcaag gcatagaaga
    12481 attaaaaaat tatctttata ccatagaaaa caaagaaaac aatgaagaac tgatttttca
    12541 ttattatatc gatagagttt tttctctaaa aggcatagga actgtcgtca caggtagcct
    12601 gaatgaagga agtatcactt taaatgaaaa aatcatctgt ttagacactc aaaaagaact
    12661 cattgttaaa aatatacaaa atcacgatac taatttagag caaatcaaag cttgtaaccg
    12721 tgtggcttta agtttaaatt gtgattataa agagttgaaa aaaggttatt tgctaagtaa
    12781 aaaaggttat tttaaagcct ttaaagaatg cgatgcttta gttaaagcaa aaaatttaca
    12841 aaatagcaaa atgatttttt gcgtgggttc aagacaaata gaatgcaaaa taaatatatt
    12901 aaaaaaacta gaaaatgatg aattttttgt gcattttagt tttgataaaa atgtattttt
    12961 aagttttgat gaggctttta ttttattaca aaacaatcgt gttataggcg gtggtaaggt
    13021 tttaaatcct ttaagcgaac ctttaaaaaa agaacaaaaa aataaatttt taatgttttt
    13081 gaaaaataaa gattttaaag cagctttttc tttcttaaaa gacgcacata aatacggctt
    13141 tggtttgctt tcaagctatc agagatttaa actctctcat caaaaagcat tgaaattagc
    13201 gaaagaatta aatcaagtat ttgtcgatga aaaaaatctt aatgtatatc atttacaaag
    13261 tctagaagaa attaaaaatt tcatcaaatt catacttgaa aaaaatcctt atgccatgct
    13321 ttcagcacat tctttagctt taaggattac ttgggcaagt gaaaattttt gcgaacttgg
    13381 gcttaaagaa atgtcaaatt tattggattt tcaaaatgga atttatttta aaaaaggtat
    13441 agattttgaa aaacttcaag aaaaaaacaa taaccaaatg tatgaaattt taaaaaaaca
    13501 aggtattaaa cccgaagctc cttataatct ttatgatttt ttagaacttg acagaaaaag
    13561 cggagataat atactcaaaa aacttaccca aaaaggcttg gttgtaagac tttcacacaa
    13621 tctttttata gaaaaacaag ctcttgaaaa acttatgcaa gaatgtttaa atttattaaa
    13681 aaatcaaagt cttgatgtgc aaagtatgaa agaatatttc aatctttcaa gaaaatatgc
    13741 tattgcttat ttagaatact tagacaaatt tcctcaagta aacaaagaag ctgaaaaaag
    13801 atttttaaca aacatttaga aaatcattat agaattaaac ataatttatt taaaggattt
    13861 ataaactatg aaaaaattaa gtttaattct tgcctgttca gcatctttgt ttgctgcaag
    13921 taattcagaa attagtgatt tttattcaaa aagcattaaa gcacaatttc caaatgctac
    13981 cgttagtgta tcaaatcgtc aaaaggttgg taatacgggt tttgaaagtg ttattgtaag
    14041 cgttgaatta aatgggcaaa aacaagaaaa cattcttttt acaaaagata gtcttattac
    14101 ccctgatctt atcgacttga aaacgggaat ttcttatgct caagaatatg aaatgaaaaa
    14161 atttcaagaa gcaagagaaa attttacaaa aaatgctaaa gctgtagcac aaaaagaaac
    14221 catggtaata gctttgggag ataaaaataa acctgcgatt tatgtttttt cagatcctga
    14281 atgtccttat tgtagagaac atttagctca aattgatgat gaacttaaaa actatcaagt
    14341 taattatatt ttaactccag tacatggaaa atctgctttt gaaaaatccg ctctaatcta
    14401 caaagaagca aaaaaagcaa aaaatgacaa agaaaaaatc gcaattttaa acaaatacta
    14461 tgatgcaaat atcaaaaatt atccaaaagt aagcgataca gaattaaaag aagttttttc
    14521 cttatatgaa aaatatcgct cattaggtct tagcgctact ccaactatta ttaaataaac
    14581 ctaatgtcta aaattacttt aattttaagc ttttttatag cactctttat gagtgcttgc
    14641 accaatgcaa ctttcataca aagctttatt caaacaagca atgaaggcat ttttatcaga
    14701 tcacaaaaac aacaaagttt taaaatttcc tttcaaaatc ctagccaact tcgaactact
    14761 ttggatagag atttggcttt aaaacttaaa aatttaggct taaaagaagt aaaagagaat
    14821 gcagattatg aaattttaat caatcttgta gatatgaaaa agcattctta tgctcaaaaa
    14881 atcacaactt cagcaagatt tttttatgat tttgatcctt tggaaagtga tggagaatgg
    14941 atggtagaaa actactatac tatgcaagtt aatttacaaa tcaactctaa aaatcacaat
    15001 tctcaaaaaa caagtcttct tgcaagaaca gcttatcttg gaaataaaga acgctgtcaa
    15061 ttatctttag aaaataaaat tataaatcaa atagtgagtt ttttttattt ttaagaaaag
    15121 acaatcaaga gtataaaaac tcttgatttt aagaattatt aagcaaaata aggtttgatt
    15181 tgttctaccc aagcatcaat tcttgattca gtttgatctt cttgattatc attgtcaaga
    15241 gcaagtccaa caaatttacc atctacaacc gcatcgcttg cttcaaatgt ataaccatca
    15301 gttgaaactt ctcctaccaa atttgcacct gcatctttta aattttgagc taatttaccc
    15361 atgccgccac aaaaagtgtc agaataactt tcactatcac ccataccaaa tacagctaca
    15421 gtttttccac caagactaag ccctgaaaaa tcaaaaccat cccaatcatc ttgtaaatca
    15481 ccacttcccc aagttgaagt tccacaaatt aatttatcgt aagaattcat tttagccgca
    15541 tcaatatctg agatattaaa aacatcgcta attccaagtt ttgaagcaat tgtattagcc
    15601 gctccttctg tatttcccat agcactacca tagattactg ctactgacat tattttctcc
    15661 ttataatttg atttgatatt ttatacggaa ctaattttaa catagttttg tttaaatcac
    15721 acaaaaaatg ttttatttca ataaaatgtg tgaaattttt gttacgcgga caaacaatat
    15781 aaaatttttc aaaattgttt tcttttatta aattcaataa tccatgaatt tcattttcaa
    15841 tttttaaatt atgtgcatta atctctttac aaagtggtaa aattgcaaat ttcttatcta
    15901 ttataataag atcaccatct tgatctatat tttttccatt attttgaaaa gaaaccttat
    15961 cataaacata agagctaaat aaaatttgtg catcaaaaca aataccataa agataaattc
    16021 ttaaaagtct taaaagatcg atattcttag atattttagt attaaaaatc aagctttttc
    16081 t
//
LOCUS       DAEDTT010000032        15427 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.032, whole genome shotgun sequence.
ACCESSION   DAEDTT010000032 DAEDTT010000000
VERSION     DAEDTT010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15427
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.032"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..387)
                     /locus_tag="KLC54_000727"
     CDS             complement(<1..387)
                     /locus_tag="KLC54_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HBD9177120.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLQTTPSKRPKKLFYISIEAFYIEKEQLREIYQKL
                     GFYEEFKELLEQFLKFYPKAKEGIYRF"
     gene            complement(384..2363)
                     /locus_tag="KLC54_000728"
     CDS             complement(384..2363)
                     /locus_tag="KLC54_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HBD9177121.1"
                     /translation="MAKIFVFLVFVFTTLFGAYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVINEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISEASINALRKA
                     VIKDIKVQNISQDTEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFEGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKLIFSKETTSQKKTEQVSKI
                     SEKKQDQKTEIKTKALETKKQDKKTNNEKENQEPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNKNLTLGFYAQTTNQNVNKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(2363..3454)
                     /locus_tag="KLC54_000729"
     CDS             complement(2363..3454)
                     /locus_tag="KLC54_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HBD9177122.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRIGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(3451..4656)
                     /locus_tag="KLC54_000730"
     CDS             complement(3451..4656)
                     /locus_tag="KLC54_000730"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HBD9177123.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYETQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITERFHSKEEANNAKSEFDRIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMHLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(4668..6863)
                     /locus_tag="KLC54_000731"
     CDS             complement(4668..6863)
                     /locus_tag="KLC54_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HBD9177124.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLARRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKEG"
     gene            complement(6847..7071)
                     /locus_tag="KLC54_000732"
     CDS             complement(6847..7071)
                     /locus_tag="KLC54_000732"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HBD9177125.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKLADIALYEIAENKITLEGLVETNR"
     gene            complement(7082..7801)
                     /locus_tag="KLC54_000733"
     CDS             complement(7082..7801)
                     /locus_tag="KLC54_000733"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HBD9177126.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSIVKNN"
     gene            complement(7853..9046)
                     /locus_tag="KLC54_000734"
     CDS             complement(7853..9046)
                     /locus_tag="KLC54_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HBD9177127.1"
                     /translation="MRKNILIFFCFFLFVDISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLTSQNEDLLKSKSN
                     MEGKLISLMAKDFAYDLPIPQGYIESEESFMAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQINKINESLKDYNAQLAKLQSLKQKQISEINKQKTDRAIYAKKLDDLQAQ
                     QEELRKTLNQLKIINDKEDANSNKNDTKIVKNNQKIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(9043..9849)
                     /locus_tag="KLC54_000735"
     CDS             complement(9043..9849)
                     /locus_tag="KLC54_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HBD9177128.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILITNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKDLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNSIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(9836..10501)
                     /locus_tag="KLC54_000736"
     CDS             complement(9836..10501)
                     /locus_tag="KLC54_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9177129.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQAAKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(10571..11749)
                     /gene="trmB"
                     /locus_tag="KLC54_000737"
     CDS             complement(10571..11749)
                     /gene="trmB"
                     /locus_tag="KLC54_000737"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HBD9177130.1"
                     /translation="MPNFKSKKIKEINLPYSKDDVEFLWLAKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSKLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKVQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLTQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFVFKEPFKIQENIKAINELKEILKVQFKI
                     "
     gene            complement(11749..12984)
                     /locus_tag="KLC54_000738"
     CDS             complement(11749..12984)
                     /locus_tag="KLC54_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HBD9177131.1"
                     /translation="MMKRFRLGFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     EPSQVVSSTSKALPPQVEHLSASTDGSNKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAGLRSEPSSKVKAAQ"
     gene            complement(12929..13897)
                     /locus_tag="KLC54_000739"
     CDS             complement(12929..13897)
                     /locus_tag="KLC54_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HBD9177132.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIISIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINIVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRHILGDSLYGYKGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFKQINLGENDEKISLGFLLEFFNSFA"
     gene            13975..15075
                     /locus_tag="KLC54_000740"
     CDS             13975..15075
                     /locus_tag="KLC54_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HBD9177133.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            15129..15205
                     /locus_tag="KLC54_000741"
     tRNA            15129..15205
                     /locus_tag="KLC54_000741"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:15163..15165,aa:Ile,seq:cat)
     gene            complement(15313..15388)
                     /locus_tag="KLC54_000742"
     tRNA            complement(15313..15388)
                     /locus_tag="KLC54_000742"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(15353..15355),aa:Phe,seq:gaa)
BASE COUNT         4961 a         2815 c         1868 g         5783 t
ORIGIN      
        1 aaaacgataa atcccttctt tagctttagg ataaaatttt aaaaattgtt ctaaaagctc
       61 tttaaactct tcataaaatc ctagtttttg ataaatttct cttaattgtt ctttttcgat
      121 ataaaaagct tctatgctaa tataaaaaag tttcttagga cgcttagaag gagtagtttg
      181 taaaaagcgc ttcaaagtaa gaaaaaaatt taaacctata ccaaaaccac tctctgcgat
      241 aatgaaattt tcttgatttt tccattcaaa agaatgagta taaacaaatt tactttcatt
      301 taaaccatct ttggaattaa aataaaaatc atcaaaatcc aaagaaaaag gagtattatc
      361 tttaaagatt aacttagctt ttttcatcgg ttgttataaa aataactctc aactccatca
      421 gcaataccct taaccaataa atcttgaaaa gctttattgg cgattctttt gccttcattt
      481 ggatgtgtga tatagccaat ttcaatcaaa attgcaggca tttgcgcacc tactaaaacc
      541 caaaaaggtg cttctcttac accgccatct acgattttat actttttgcg tgtttgagtg
      601 agtatatttt tttgtacatc aatggctagt ttatttgaag caacgatttt ttcacgattt
      661 aagaaattta aaatactttg ttttgagaaa taattaatct cttcaaaatc tccttgattt
      721 tctttttctg ctgccttttt acttctttca cttcttgcag gacttaaaaa gaaagtttcc
      781 acaccttcac tacttttggc ttttgtggca tttggtgctg cattagcatg tatagaaata
      841 aacaaatccg ctcttttatc attggcatat ttagttctat cacgaagatt gataaattta
      901 tccgaacttc tagtataaag cactttataa ccgcgttttt taagttcatt tccaagtttt
      961 aaagccgtgc ttaaaactat atctttttct tttaagcttc cttttttatc acttaaggca
     1021 ccgctatctt ttccaccatg ccccgcatcg ataaccacaa gctttcctga tttgtaattt
     1081 gtatttaaag ttttactaga actttgagtt gcttttttgt ttacattttg atttgtagtt
     1141 tgtgcataaa aacctaaagt gagattttta ttatccaact cctttaagag tttaaattct
     1201 ttaggagcac tcaaaaccac acgaacagtt tttggattgt attgagtaac tgtaatcaca
     1261 ttttgtccaa aagtaaagct ttttctatta ccttctaaca cacccttaaa acttacaaca
     1321 tatcggaatt tttgatcttt ggtatcaaat actgctattt ctttttcatc taaatcatcg
     1381 cttaaattta acaccacagc attagaaatt ttatccacat ctaaaacata taaaggctct
     1441 tgattttctt tttcgttatt ggttttttta tcttgttttt ttgtttctaa agctttggtt
     1501 ttaatttctg ttttttgatc ttgctttttc tctgaaattt tactaacttg ctcagtcttt
     1561 ttttggctag tagtttcttt tgaaaaaatt aatttttctt ctttaaaaga tatatcaata
     1621 ggaatttttt ctttagcata aaccactatg cgtatggttt tgggattaaa ttgtgaaatc
     1681 actaaacgat agtcatcaaa tttaaactct tttttacccc cttctaaaac cccctcaaaa
     1741 tcactaataa aacgatagtt tcctttttcg tctaaagcaa aactttttaa ttgatcctta
     1801 tccaaatctg catttagttc aaactctaca ccttggtttg ttttacttga ctttaaaaca
     1861 taaattttat catcgctttt tgctttagaa acgatactac tctttggtgc ttgcgaagtt
     1921 ttagaatttg ttttttctgt attttttatt tgttcgttag atgatttttt ttcatttttt
     1981 tgaactgttt ttataggttc aaaagttgat ttttcagtat cttgagaaat attttgaacc
     2041 ttaatatctt taataacagc ctttcttaaa gcattaatac ttgcttcact tataccactt
     2101 tcttttaact cattagcata tgacttgtca tctaaattta aagtatttga actgatgatc
     2161 aatcttttta aaatttcaat tttagttttt tcatcttcat taataacact ttgtatataa
     2221 aggcttttga gctgatggtg aaattttact tgtacttcac ttttagaacc gataaaattt
     2281 ttatcgaaat ttgcaagttc attttcatag gctccaaaaa gagttgtgaa aacaaatact
     2341 aaaaatacaa aaattttagc cattattcac cattaaccaa tttttccata agttctttaa
     2401 cactgataag cttatctaaa cgatatccat ttgcacctgt aaagaaaagc cctgtttctt
     2461 ttttacctga ccacgcatca aaaagcctat ctgctataca ataccctact ttagttgcct
     2521 cttttccgcg tccacaaggc gctacacaat tgcttataca attgatcttt ggacctattc
     2581 ttttatctac caaatttaaa agattggttc taaccccacg tgcaggatag cccacaggag
     2641 atttaataag ctctatatct tcttctttag aagctagtaa aacgctttta aattcttcgc
     2701 ttgcatcaca ttcaaaagtt cctatgaaac gcgttcccat ttgaacacca ctagccccta
     2761 aagaaatagc gttttctata tcttttttat cccaaattcc acctgcagca atcacaggaa
     2821 aagaccccca atttttagcc tcttctacca caggagcgat taatttttct agctgataat
     2881 ttggatctaa gcactgctca taagtaaaac cttgatgacc tccacttttt ggcccttcta
     2941 aaaccactgc atcaggcaag cgattgtaac ggctttgcca tcttttgcaa ataattttta
     3001 aagcctttgc agatgaaatg ataggcacta aagccacatc aggaaaatct gcagtaaatt
     3061 caggtaaatt tgtgggaagt ccagcacctg aaacaatcac attaaaacca acttcacaag
     3121 catcgcgtgc tattcttgca taatcattac ttgcacataa gatattacac cctaaaggtg
     3181 catcgccaca aacttttctt gcattattaa tcaaagcttg caaacccttg cgtgagtaaa
     3241 aattttcact tccataaggc ttagcattta attctttact tgcatacttt ctttcttcat
     3301 aatatcctgt tcccacagaa gaaatgatcc caagtccacc atttaaagaa actgcagaag
     3361 ctaatctatc ccagcttatg cctagtccca ttcccccttg aaaaatggga tattttatag
     3421 tatgttttcc tatttgtaag ggttgtaaat tcattctttt acctttaatt ttgcaaattt
     3481 tcttttacct atttgtaaga tgtattctcc ttgttctaaa tgcatttgct cgtcgctaac
     3541 tttttgagaa tttacactta ctgcattagc actgatgctt cttcttgccg cagaagtaga
     3601 actttccaaa ccacattcaa ccaaagcctt agcaagccaa atttttcctt gtatttcaaa
     3661 ctcagccata tcacttggta aagcattttg agaatgaatc ctatcaaatt cagacttagc
     3721 attattagcc tcttctttgg agtgaaaacg ctccgtaatc tctaaagcta aattttcttt
     3781 agctttttta ggatgtaaat tgccttgttc tatatctttt tttatttgcg cgatttcttc
     3841 tagacttttt tgacttaaaa gttcataata tctaaacatc aattcatcac taatacttaa
     3901 aattttagca tacatatcat tagctttttc tgtaacacca atgtaattat ttaaactctt
     3961 actcattttg tttacaccat ctaaaccttc gagtaaaggc atcataatca cagcttgttc
     4021 ttttcctata ttataaaccc tttgaagctg tcttcccatt aaaagattaa atttttgatc
     4081 cgttccgccc atttcaatat cgctttttaa agccacgcta tcatatcctt gaagtaaagg
     4141 atacaaaaac tcgcaaatcg aaatagggct ttgctcttta aatctcttgg taaaatcgtc
     4201 acgctcaagc attctagcta cactaaaagt tgaagtaagc tctactatac ccgcagctcc
     4261 aagttcatta agccaagtag aattaaactt aatctgtgtt ttttctttat ccaaaacctt
     4321 aaaaacctgc gtttcataag ttttagcatt gattaaaact tgctctttat ccagcttttt
     4381 acgcgttgca ctttttccac ttggatcgcc aatttgtcct gtaaaatccc caatcaaaaa
     4441 ttgcacaata gctccatgtt tttgcaaaaa agccattttt gttaaaacca cgctatgacc
     4501 taaatgtaaa tcaggtgctg taggatcaaa ccctgccttt atgaagaaat tttcaccctt
     4561 ttcataataa tttttaatta aattttctat tctttcttca tcaataagct ctgcacagcc
     4621 acgcttaact tctgctaata ttttttttat atccataata aaccttttta accttcttta
     4681 taagcatcat ttaaagatgt aaaatctaaa attttacaac gagattttaa cctatccttg
     4741 acactatctg ggttgatatt atcaggaatt tccattgtaa tctcaaaata atctaccgcc
     4801 gaatttaaat cacttgataa attaattgtt aataaattta tctgcatttt agctaaaaat
     4861 gccaaaaatt ccgctaaaac acctttttta ttttccaaag aaaaaatcaa tttataagat
     4921 ttagggatgt tagaatccca ttttataaat accatatctt gattattatc tatcatttta
     4981 tcagctctat cgcaaagctt atgatggaca atagcgttac cacctttaac aaaagctaaa
     5041 acagcatcac ctctttttgg atggcaacaa aaatcaaaat ccacattagc gattttatgg
     5101 ttgcaatata gagtaaaatt tcctattttt tgttctttaa tctcatattt atcaaaccaa
     5161 tatgacttct tggcgtattt tttaagacca ttaactatat cttttaaata agcactatct
     5221 gttgctactt gtctaatacg tctggctaaa ttttcttttt ctatccaagt ttcaattctg
     5281 tttttatcaa ctccaaaaat aaaacttaac atattaatag aacttgctag attaatctct
     5341 ctgatttttt gcttacaaaa ttcccttata cttgcttttg cttttcctgt tttaacacta
     5401 tctatccaag aacagcgata aaatttatca ttactagtaa ccactcgcac aatatcgcca
     5461 tttttaagct cggttaacaa aggtacttta atacgattta cataagcact ttttgcatga
     5521 agccctactt tggtatgcac ttcataggca aaatcaagaa ccgttgcacc acgaggcaaa
     5581 gtgaaaattt ctcccttagg agaataaact gcgacatctt caacataaag actatcttta
     5641 gcatattcat aaagttcaat agcattataa tcttctgcat tttcaagatt gtttatactt
     5701 tgcattgaaa tatctgtaag ccaatcaaga cgaggcgcaa ccacactgcc atcttcttta
     5761 tatttccaat gcgctgctat accaaattcc gcaattttat gcatatcaaa agttcgaatt
     5821 tgtgcttcta taatactttt agcatcaaaa agtgtggtat gtatggtttg ataaccattt
     5881 tgtttaggca aggctatata atccttaaaa cgcgaaacca aggggttaaa atgtgtatgt
     5941 aaaattccca aagctaaata acaatcactt actttttcaa ccaaaattct taccccaagc
     6001 aaatcaagaa cttcttcaat accaatgcct tttctttgca ttttaagata aatagaatag
     6061 ctatgtttaa tgcgtttttg aatttcaaaa ctaccttgtc taaagccatt gctcaaaaat
     6121 aaaagttcga ttttggaaat aaattcattt aaacctaatt gcatttcttg attattggag
     6181 ttgatataat tgtcaataag cttatactca tctggcataa gatatttaaa actaagatct
     6241 tccaaataat tttttatgct tgaaataccg agtctatggg ctattggagc atatacaact
     6301 aaagtttctt cgctgattct tttttgctta tcttctctta gaatatcaag agtaagcata
     6361 ttatgcagcc tatcacataa cttcacaatc aaaaccccaa catcttcaat gcttgctaaa
     6421 agcatatttc tgaaagtcaa ggctgattta gttaaacttt ttttagattt tgatgaaatg
     6481 agattatctt ctctaatttc tataatttta gtaagtccta aaacaagttt taaaacctca
     6541 gaaccaaact gctctctaag ttcttcttca gtgcagtttg tatcttcaat cacatcatgc
     6601 aataaagcag ctaaaatatt gcttttattt tcacttaaaa atccaaccag tgttgccact
     6661 aaaataggat gtaccgcata aggctctcca ctttttctaa actgcccttc atggcaaaat
     6721 atacagtaat ctaccgcttt ttcaagaatg gcatcatggc cacaaatttc gaaaagcaaa
     6781 gccttagcag cttctaaatc tttacaattt tttacattat cgattaattg ttcaagcaat
     6841 aattcttcat cgattggttt caactaaacc ctctaaagtg attttatttt ctgcaatttc
     6901 atataaagct atatctgcaa gtttattttt atttttatca aagtctacca aaggggttgc
     6961 tccatttgcc aattgttccg ctctttttgc taccactaaa gaaaggcgat atctatcatt
     7021 acccattttt tccaaagctt ttgccgctac ttcttctatt cttttatcca taattttctc
     7081 cttaattatt tttaacgatt gaacaaaggc tagtatcacc ttgtatgatt ttaagtaaat
     7141 taccctcttc aaacatatta caaaccacaa taggaagttt gttatcttta gctaaagcta
     7201 tagctgtatc atccatcact ttaatattat cttgcatagc ctcatcataa cttaaagtat
     7261 ttaaaaatac tgcatcatca aattgttttg gatctttatc ataaactcca ttaacttttg
     7321 tagcttttat taccatatct gcatcaattt ccacagctct taaaatagct gttgtatctg
     7381 tagtaaaata agggtttcca gtacctgcgg caaaaaccac aacacgaccc ttttctaagt
     7441 gtctttgcgc tcttctcata atataagttt cacaaaatgc ttccatctga atggcgcttt
     7501 gaaccctaac ttcaagtcca gagctttcta aagcttcttg tatagcaata gcattgataa
     7561 ccgtagcaag cattcccata tgatctccac ttgtcctttt aatcaatccg cccttagcag
     7621 cacttactcc gcgaataata ttaccaccgc ctataactat gcctacttct atttgatttt
     7681 ttataagttc tttaatctct gaagctatga attttaaaat agaattttct ataccaaagc
     7741 cattttcacc tgctaaagcc tctcctgaaa attttactaa aactcttttt ctctcttgca
     7801 ttatttctcc ttatttaact tgaaattata ttttaaattc cattaaattt agctaattta
     7861 agctaatgag ttccaaagga ttgatatgaa aatttttttg agttacttca aaagtaagat
     7921 cattttttat tctacccact acggcacctt ttttaatatt cttaccaact ttaatattag
     7981 gagcaatctt atctaaatgt gcgtatattg tatgtatgcc attatcatgt tcaacaataa
     8041 caactcgagc taacatacta gtatctttgg caaaaactat ttttccatct agcacatttt
     8101 taacaactgc atcgctttta ttgcttctta aaactacatt ctcgttaaaa attttaagat
     8161 tgtaaacagg atcaacataa tttccaaatt tttgcttcac agtaaaagaa tccaatggag
     8221 ctatggtttt ttttcctgtg taacgcttga ctgaacttcc ttgatagctt gaacctaatt
     8281 gtcttatttt ttgattattt tttactattt tagtatcatt tttgtttgaa tttgcatctt
     8341 ctttatcatt aataattttt aattgattta atgtttttct aagctcttct tgctgagctt
     8401 gcaaatcatc gagttttttt gcatatatag ctcgatctgt tttttgttta ttaatttcgc
     8461 taatttgttt ttgttttaaa ctttgaagct tggctaattg agcgttgtaa tccttaagac
     8521 tttcattaat tttattaatc tgagcttgtt tatcatcaat aagcctgctt actccctcat
     8581 aatctttaga aattttaaaa atttcttcat ttaaaacttt gtttaaactt cctaaaattt
     8641 caaaagccat aaaactttct tcactttcaa tatagccttg agggataggt aaatcataag
     8701 caaaatcttt ggccattaaa gatataagct taccttccat atttgattta cttttaagca
     8761 aatcttcatt ttggcttgta agggtgttta actcttgatt ttgagcctta gcacttgctt
     8821 caagcttaga agtttgtgaa tttaagcttt caatttgcaa acttagatct ttcaaacttt
     8881 tttcaccatt taaaatgtcg ctagccaaat cttcaagttt tttatttaac tgttcttgta
     8941 tgcgtttatt ttcttctaaa ctttttgttt tttcatttat agcgtttgct aaacttatat
     9001 caacaaacaa aaaaaaacaa aaaaagataa gaatattttt tctcatcttt taaccttaaa
     9061 cataaccgta tttacacaca acaagcaaat aaacaaagta gctaaaaaaa ttaaagtcaa
     9121 atgtaaaata aaattaatag gtggaaaaat aatatctaca gcctttaaac tttcttggat
     9181 aatagaaaga tcaaaaattt gggtaaaaaa ggcaagtaaa ataacaaaag caataaaaca
     9241 atcaaccaca accaccttat aaagcataaa agatctaaac caaaacggag ctccaaataa
     9301 acacataatt tcaatacgat cggtatgttc ataaagccaa attctcatct gttttaaaaa
     9361 caaaacaaag gcaagtaaaa taatgataaa caaaaataac caaaaaacaa atttcatcaa
     9421 aataagcaaa gagtatatct tatcatgggt tttggaaaaa gtttcaacct tactaacacc
     9481 tacaatattt aaaagttgat ttttaatcga atttagttca ttttgatcgg gtaaagaatt
     9541 taattttaaa gtataaaatt ttggcagaga atcttttaaa actttcaaat tcttttcaga
     9601 aacatcattt ttcaaacgat cgattaaatc cttaggatct aaagattcaa gtccagcaaa
     9661 aaatggtact tttgttttta ctacattctg atcaagttca gttttgctga caactataat
     9721 attataatct ttattaacaa gttcttcata atgctttaaa gttgcatttg taatcaaaat
     9781 aaattcaaaa gcaaacatca taaaaagtaa aggtaaaatt aaagataaat gtgttttaaa
     9841 aaatttcatt catttttcca ttttctatat taaaacgacg ataatccact cttaaattac
     9901 taggaattct atgtgttacc actataacac aagttcctaa aagctctcta gcagatttta
     9961 aaagagtcca tataatatca gaagaatact cgtccaaatt tcccgttggc tcatcgcaaa
    10021 gcaaaagctt tggattatga gctaaagccc tagccatagc gacgcgttgt tgctcaccac
    10081 cgctaagttg attaggcaat ttatctgctt taaaagttaa atttacatgc tttaaaagct
    10141 tagcagcttg atcatggcat acttttttgc tataaccttt aatcattaaa ggcaacataa
    10201 catttttttc aacactatat tcttgtacaa gtttataatc ttgaaaaata atccctattc
    10261 tttgacgcaa ttttaaaagt tctaaatttc caattttatt catcaaagat ccacatactt
    10321 caagcttacc agaaataggt tctaaatctc cataaaaaga ctttaaaagc gtactcttac
    10381 cactcccact tttacccgta ataaaaacaa aatcatcatc cttaaaagca aaactcgctt
    10441 ctttaataac taattcatca taacctaaag taagtttatt tgcttggatt aaattaggca
    10501 tcctttttcc ttaatttccc tttttaaatt tttaaattat gctttatttt tgcttaattt
    10561 tcaagaaaaa ttatatttta aactgaactt ttaaaatttc ttttaattca tttatcgctt
    10621 taatattttc ttgaatttta aatggttctt taaaaacaaa atcaatcgtt ttatcaagat
    10681 gtaaataaca atgttcaggc ttattaaaag ctccaaaagc aacctttaaa agcaaattct
    10741 catcttgttt atagatgctt tcaaaatgca agaaaaaatc atcttttttt atagtaatat
    10801 ttttaaaatt ctgctctatt tttttcaaat cctctttaga aaattcaacc gatgagagat
    10861 taaattcatt taactcatag tttttacact cttggttaaa attccacacc caaagatcat
    10921 atatattttt ttcttgcttt ttccatctat cttcatattt gcttgaaatt tctaaatttt
    10981 cattttttct aagactaaat tttggagcag gaaaagtcaa aaattgttct agagtaaaat
    11041 taaaatactc aaaactatct gttctaagct caaaacgacc attttgggtt aaaaccctag
    11101 cacattcttt gcaaaaatct ttcccaataa ctcgcctatg aggcttttta tcccaaggaa
    11161 caggaaaatg tagaaaaatc ttttcaactg attttgattt taatacactc aataacaatc
    11221 tcgcatcact ttggattagc aaaatattat ttacattttg cactttagca agtttagcta
    11281 cttgagttaa agctgggttg taaatttcca cccctaaaat taaaacattt ggattttctt
    11341 ttgcttgata aagcaaatgt cttcctgatc caaagcctat ttctatataa attttacctt
    11401 gaagcttaga caaaagctca tcaaaattat caacgataaa tggtgttttt tcaattaaag
    11461 cattgttttt aagtccaaaa gcttcattga taatatcctc acaaaaacct tctttaaaga
    11521 tttttaaagc cttttgcaaa taacctattt tagaaggttt tgtatgttta tcgcctttaa
    11581 tcacaaaacc attttgtgct tttttaatct gcagaaagaa actctcttct tgaacctttg
    11641 tataaataag actaacatta tcattcttag caagccaaag aaattcaaca tcatccttgc
    11701 tataaggtag atttatttct ttgatctttt tgcttttaaa atttggcact actgagctgc
    11761 cttaactttg cttgaaggtt ctgaacgaag cccagccgaa tcaatagcaa taacttcata
    11821 actatattcc acccctggta aagcttttac atcttttaat cgcttttctt taatgccttt
    11881 aaaaacagca ttttgctccc cgccatagcg tcttacttca tactcaacag ctctagtatc
    11941 attatcgctc cattctaaat ttatcccttc gcttgtgctt tgagccaaaa taatactagg
    12001 agccaaaggg ttacctaaag ttttaccttc tacaccatct tttggcatag gactttcaag
    12061 accatcttta tccaccattg ttactttata atacttgctt ttacctgctc cttctactat
    12121 atcctcataa gaatttttat cagtctttgc caaaacacta aaaggaagga agcttgagct
    12181 tgtagaataa actttataat aagaaaaatc ttcatatgta ggagcatccc aagttaaaat
    12241 gattttatta gaaccatctg tgctagcact taaatgctca acttgaggag gcaaagcctt
    12301 gcttgtagaa cttacaactt gacttggttc actctttatc ccattaaaac tcacagcaat
    12361 gattctatag cttgaatttt cattaggttt taaatcacta tcgatgtatt cagcgtttaa
    12421 acgatttttt acttctgcaa tttttttaaa ttctttatca tcacctttag ttctttcaat
    12481 aatataagaa tcaactctaa aatcaggatg cggacgccaa ataagtttaa tacgattagg
    12541 caaattagtc acagcttgaa caaaaggaac agcttcaagt cttggagctg tgctcacttc
    12601 tataaccttg ccatcttctg aaatttgtcc ttgctcatta aagcttttca tcatataacg
    12661 atacttagta ccaggctcta atttagtatc tacataatga gtttgaaact tatctttaat
    12721 agtgcctaca agtttaaaat caggattttc atcactagaa cgatataaat aaaatccttt
    12781 aatattttca ttatataaag gctcccattc aaaagcaata ttactcatat cgctaagact
    12841 ttttaaactt tcaacctttg gcaagctttc atttacagca ggctctttac ttgaagctag
    12901 cgaattcatt tgcgaaacac tacaagcgct aagcaaaaga gttaaaaaac tcaagtaaaa
    12961 acccaagcga aatcttttca tcattctctc ctaaattaat ttgtttaaac ataatatttt
    13021 taaaatcttc catcaaaggt gctttaacaa aaatttgctc tttggttttt ggatggataa
    13081 aatacaaaaa ataagcatgc aacattatcc tacaatcata cttaccctta taaccataca
    13141 aactatcacc taaaatatgg cgatttaaac tagccaaatg cgctctaatt tgatgagttc
    13201 ttcctgtaaa aagcttagca gccatcaaag ttaaattttc agtttttact atatttataa
    13261 aagctgattt tgcgttttta ctgaatttat tttccttatc tatggctatt tttttaatag
    13321 cattagaagg cgaacgcatt aaaaattttt ctactataat tttatcttct tttagtggca
    13381 aatcaattaa cgcaaggtaa attcttccca tgcttttatc tgcaagctgt tcgcttaatt
    13441 tttgatgggt gaaattattt ttcgctatca gtatagctcc gcttgtatct ttatctaatc
    13501 tatggacaag accagctctt atctctcctc ctaaatttga taaagtatat tttttttcta
    13561 ttaaccaatc caccaaagtg gcatttttaa cgctacttgc tccatgaacg actaaatttg
    13621 aaggtttatt taaaacaagc aagtcttcat cttcgtataa cacatcaata tcaaaatcca
    13681 cttcaaactg aggttttatc tcattgcaaa gctttaaact tgcaatagaa ataatatcac
    13741 catttttaag cttaaatgaa tttttatctt gaattttatc attaacctgt acacaatctt
    13801 tttctataag taaagcaact tgattgcgac tttggtttaa ttttttagcc aaaaatacat
    13861 caagccttga attttcatct actaaaaaag tttgcatttt ttccttagaa gttttgataa
    13921 atttaaaatt ttagtttata attatagctt tatattacca actgaaggca aattttgttt
    13981 agattagata gaagaatttt aactcatttt gactatatgc aacccatttt atttttaccc
    14041 ataattctta tttcattttt cttaatcttt gaagctaatc cttttttagc agaaaaacag
    14101 tttgtttatg cctgtgtggg attgtttgct tttatggttt ttttcttctt tcccataagg
    14161 aaatttattt ggattattcc tgttgcttat tggattaata tttttttatt gctaagcgta
    14221 gatatttttg gggttgaaaa attaggtgct aaaagatggc ttgaaattcc ttttactcac
    14281 tttactatac aaccttctga aatttttaaa cctagtttta ttttaatgct tgcctatctt
    14341 atttatcaaa atcctcctcc aaaaaatgga tacaagctta aacaattcat caaacttagc
    14401 ttttacatca tcttgccttt tttgctaatt gcaaaagaac ctgatttagg aagtgctatg
    14461 gttttactac ttgttggttt tggagtgctt tttatcatgg gagttcatta taaaatttgg
    14521 ttaagtattg ttatagctat aagtgttagc tctcctatta tttatacaca tcttttaaaa
    14581 ccctaccaaa agcaaagaat tcatgatttt atttcagaaa aaccaagtta tcaagtagcc
    14641 caatcaatga tagctattgg aaatggtggt ttaaccggaa aatctcaaga tgaagctacg
    14701 caaactcatt ttaaattttt acctatttca actagtgatt ttattttcgc ttacatgata
    14761 gaaagatttg gatttattgg gggattgaca ttaattatat tttatatttt acttattttt
    14821 catctactta gtttaaatta taaacttaaa gatgattatt ttgctagagt tgctattaat
    14881 tgtgttgcat tatttatttt tatttatgcg gcagtaaata tttcaatgac tataggtttt
    14941 gcaccagtag ttgggatccc tttgcctttt tttagttatg gtggaagttc ttttactatt
    15001 tttatgattt tttttggaat tttacagcat ttaatcactt ttagatattt ttggacggat
    15061 ataaaggcta aataaaatat ttttaagcat taataagata taattttatc ttttaattca
    15121 acttaggcgg atttatagct cagttggtta gagcaaccgg ctcataaccg gttggtcgca
    15181 ggttcgagtc ctgctaaatc caccattcta catataagct atagactctt tctttaaaaa
    15241 ataattttta gttctttaaa tatttcaatc ttatataaaa aagtatgtga tgtgattttc
    15301 tgaaagataa agtggtggtt agaggcagaa tcgaactgcc gacacgcaga ttttcagtct
    15361 gctgctctac cgactgagct atccaaccac aatgatttga taaattaaaa atgtaattgt
    15421 atctttt
//
LOCUS       DAEDTT010000033        15324 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.033, whole genome shotgun sequence.
ACCESSION   DAEDTT010000033 DAEDTT010000000
VERSION     DAEDTT010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15324
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.033"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..704)
                     /locus_tag="KLC54_000743"
     CDS             complement(<1..704)
                     /locus_tag="KLC54_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004291563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HBD9177134.1"
                     /translation="MIKISILIPSFNSILYIKECLESVVNQSLKEIEILCIDAYSDDG
                     TLEVLQEYALKDKRVKIILSDKKSLGYQLNLGLKEAQGKYFTIVESDDYAHFLMCEKL
                     WALSQNYDCDMIKADIIGFCDKKKVKKFQNEAICYDKNLYGKILHFDDKIEILKNSWN
                     MNQSGIYKMDFIRKFNIRANETLGASYQDLGLWFLMVVFAKNIYFHNEGLYFYRQDNP
                     NASMQSKDKVYCVCDE"
     gene            complement(704..1684)
                     /locus_tag="KLC54_000744"
     CDS             complement(704..1684)
                     /locus_tag="KLC54_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HBD9177135.1"
                     /translation="MSKYSVIVPVDLDLRPFDILKKVESILKRSSDEVEIVFGHNDRG
                     SIFDKLLKTICTKKSNVKLISGKFYTKLVCQSLLRNRAVEQCSSEFIYLMDVDYLFDE
                     ALSDGCINDIKNGQNPFIILPCLYLSRKGSREIFKFSREEMFEKYISFRKDLFISLAS
                     PSGGSIFMKKEDYFAVGGFDEDFVGRGGEDFEFMIKLALYKNVIKPTKDLMVNKFYKA
                     PLLSEGFRKYLTFNGLPYFFEKKVAFHIYHGRNRLRGYFRQYDKNSNLLQEKIKLASN
                     LEDNGASLIEFYEQLCKKYSVSVDKYAVLFDTYKPKLFSFERFMLFLRRL"
     gene            complement(1681..2628)
                     /locus_tag="KLC54_000745"
     CDS             complement(1681..2628)
                     /locus_tag="KLC54_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HBD9177136.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLAKNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTSEDVLIAISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQGDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKTSDKPRFDFKAKEIMSTNPKVVDA
                     DAMASEAEEIMLKYKIKEIVVSKENKVVGIIQLYAIGNV"
     gene            complement(2638..4296)
                     /locus_tag="KLC54_000746"
     CDS             complement(2638..4296)
                     /locus_tag="KLC54_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HBD9177137.1"
                     /translation="MKKILILFFSCILCFGAVDVSQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIYQILVFGAHLFNGNFKNYNQRVYNPDYKIAVGDQISLKIWGAVEFS
                     QVLAVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKVNPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SSSVTAQGAAIRAQQAKTILEFIQRAKQVQPKGQIVIDNPKSYNSIILEDGDTINVPS
                     KNNLVIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKPGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            complement(4298..5416)
                     /locus_tag="KLC54_000747"
     CDS             complement(4298..5416)
                     /locus_tag="KLC54_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HBD9177138.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIVWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTSGILSLLSSTSTANEDLNYLKGYIESSDMLKILDEKIKLKDL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLKVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNDLIAFQNKYGVFDPLKQA
                     ETKASLVAQIEANLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            complement(5416..6078)
                     /locus_tag="KLC54_000748"
     CDS             complement(5416..6078)
                     /locus_tag="KLC54_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9177139.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGGNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGKK
                     LQEKVKFVEDFAELGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHDVAEIKEWCDKIIYMKNGQIAVYDDVDEGIAVYQG
                     KA"
     gene            complement(6075..6857)
                     /locus_tag="KLC54_000749"
     CDS             complement(6075..6857)
                     /locus_tag="KLC54_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD9177140.1"
                     /translation="MFNVIHALFFRELKTRFGKNRYLGYIWVVGEPMSVVLLVTIIGT
                     VIREYHHQVMPEGISIFMFLISGIMPFFMFRSIVTQLMNGIGANLSLFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFAGWFFRLDIFPIHLLGVLFCIFLLICSAFALGICFA
                     IVWHFVEPLRTLLAYFSIVFYWSSGIIFPTWLTPRPLLDIFYYNPLLHIMELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFVYYYNRQALTAAKKE"
     gene            complement(6932..7339)
                     /locus_tag="KLC54_000750"
     CDS             complement(6932..7339)
                     /locus_tag="KLC54_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177141.1"
                     /translation="MDERILEFIKNEQLLSWAMIDEKGVYTASAFYVFDEKNLAFIIA
                     SHEDTKHIRLASKNSSIAVNIAKENKIVFLKGVQAKAEFKMASKEQMKIYFSKFPFAK
                     LDKSAKIYALELSWLKLTDNTLGLSKKLEFYKK"
     gene            7416..7979
                     /gene="ciaI"
                     /locus_tag="KLC54_000751"
     CDS             7416..7979
                     /gene="ciaI"
                     /locus_tag="KLC54_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HBD9177142.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSVSYANNEEGKTL
                     NLKRQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDENHQNAIMNNFTNKLSDLLKQNQTDDKDINASMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            8016..8705
                     /gene="dut"
                     /locus_tag="KLC54_000752"
     CDS             8016..8705
                     /gene="dut"
                     /locus_tag="KLC54_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HBD9177143.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFAWKHWKNISSPTNWENVRIEIVDIWHFILSLLLEEYRNKNGNDFKIIA
                     NEVISVSVFQDFCKEEEHPNESDIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNHGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            8707..9420
                     /locus_tag="KLC54_000753"
     CDS             8707..9420
                     /locus_tag="KLC54_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HBD9177144.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVTSTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLGYQRILKLKAKA"
     gene            complement(9403..10368)
                     /gene="tilS"
                     /locus_tag="KLC54_000754"
     CDS             complement(9403..10368)
                     /gene="tilS"
                     /locus_tag="KLC54_000754"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HBD9177145.1"
                     /translation="MQIKDEILALLKRGKNLLAFSYGSDSSVLFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQ
                     GYDHLILAHHLNDQFEWFLMQLSRGAGLAEILGMQECEKRSNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKRSFSYLDKDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKELLKGDCVLGGKIALVYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(10358..11677)
                     /gene="rimO"
                     /locus_tag="KLC54_000755"
     CDS             complement(10358..11677)
                     /gene="rimO"
                     /locus_tag="KLC54_000755"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HBD9177146.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPSKADVLIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIVAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANNTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            11751..12848
                     /gene="prfB"
                     /locus_tag="KLC54_000756"
     CDS             11751..12848
                     /gene="prfB"
                     /locus_tag="KLC54_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HBD9177147.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANAGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            complement(12930..13322)
                     /locus_tag="KLC54_000757"
     CDS             complement(12930..13322)
                     /locus_tag="KLC54_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177148.1"
                     /translation="MKKILTSALALGAMTLIIGCGDGDLVELKNNGNDQAMFDLGNQE
                     IMKKYPNYKLYDYTSVRAISDFKDPEGKIKEMKRDLEIDKTPYSNYVFLLNPNDKKDY
                     KVVSVYCDKDFKKRIYCSVNDAFRFYAR"
     gene            complement(13440..14558)
                     /gene="truD"
                     /locus_tag="KLC54_000758"
     CDS             complement(13440..14558)
                     /gene="truD"
                     /locus_tag="KLC54_000758"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HBD9177149.1"
                     /translation="MNLEEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILEIFTHENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQG
                     FANYFGYQRFGKFGDNYKEGFEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     ERFKARDISAMGLLIGAKAYETGEGLALNLENEIFKDALEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(14527..>15324)
                     /locus_tag="KLC54_000759"
     CDS             complement(14527..>15324)
                     /locus_tag="KLC54_000759"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HBD9177150.1"
                     /translation="KAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWFSLEQIATK
                     AMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNIKIIGGDTI
                     SNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNGGTLKPNHV
                     FIKPKLRASFFYEVAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLDDYTLYSGE
                     EYEILFAFDEKERQNIKTIAKKHGVKLNIFGKAVKGKYEFRGREHHF"
BASE COUNT         5314 a         2781 c         1904 g         5325 t
ORIGIN      
        1 tactcatcgc aaacacaata cactttatcc ttactttgca tcgaagcatt tggattatct
       61 tgtctataaa aatacaaacc ctcattatga aaataaatat tttttgcaaa aactaccatc
      121 aaaaaccaaa gtcccaaatc ttgataagaa gcccctaaag tttcattcgc tctaatatta
      181 aattttctta taaaatccat tttataaata ccactttgat tcatgttcca agaattttta
      241 agaatttcta ttttatcatc gaaatgtaag attttcccat ataaattttt atcataacaa
      301 atagcttcat tttggaattt ttttactttc tttttatcac aaaaacctat aatatccgct
      361 ttaatcatat cacaatcata attttgagat aatgcccaaa gtttttcaca catcaaaaaa
      421 tgtgcataat catcactttc tactatagta aaatactttc cttgagcttc ttttaagcca
      481 agatttagct gataacctaa gctttttttg tctgacaata taattttaac tctcttatct
      541 tttaaagcat attcttgcaa cacttctaga gtaccatcat cagaataagc atcaatacat
      601 aaaatttcta tctcctttaa gctctgattt acaacacttt caagacattc ttttatataa
      661 agaattgaat taaaactagg aattagaata gaaattttta tcattacaat cttcttaaaa
      721 acaacataaa tcgctcaaag ctaaaaagtt ttggtttgta agtatcaaat aaaacagcat
      781 atttatctac acttacacta tattttttac aaagttgttc ataaaattct atcagacttg
      841 ctccattatc ttctaagtta gaagcaagtt taattttttc ttgcaaaaga tttgagtttt
      901 tatcatactg cctaaaatat ccacgcagtc tatttcttcc atgataaata tgaaaagcaa
      961 cttttttttc aaaaaaataa ggcaaaccat taaaagtgag atattttcta aaaccttcgc
     1021 ttaaaagtgg agctttataa aatttattaa ccattaaatc cttagttggt ttaattacat
     1081 ttttataaag tgcaagttta atcataaatt caaaatcttc gccgccacgc cctacaaaat
     1141 cttcatcaaa accacccaca gcaaaataat cttctttttt cataaaaata cttccaccac
     1201 taggactcgc aagagaaata aataaatcct ttctaaaaga aatatacttt tcaaacattt
     1261 cctctctgct aaatttaaaa atctctctcg agccttttct cgaaagatat aaacaaggta
     1321 gaattataaa aggattttga ccatttttta tatcattaat acacccatca cttaatgctt
     1381 catcaaacaa ataatccaca tccataagat aaataaattc actagaacac tgttcaactg
     1441 ctctgtttct tagtaaactc tgacaaacta gctttgtata aaatttacct gaaattaatt
     1501 ttacattact tttttttgtg caaattgttt taagaagttt atcaaatata cttccacggt
     1561 cattatgtcc aaaaacaatt tcaacctcat cgctagacct ttttaaaata ctctcaacct
     1621 ttttcagtat atcaaaaggt ctaagatcta aatccacagg gacaataaca ctatatttac
     1681 tcacacattc cctatcgcat aaagctgaat aatacctaca accttatttt ccttagatac
     1741 aacaatttct ttgattttat attttaacat gatctcctct gcttcacttg ccatagcatc
     1801 agcatcaact actttaggat ttgtactcat gatttctttg gccttaaaat caaatcttgg
     1861 tttatcgctt gtctttaaag cacgacgcaa atccccatca gtgatgatac ccactaattt
     1921 ttcattctca agtaccacac aaagccctag ctttccacta gtcatcacat caacaagatc
     1981 gttaaattca gtatcaggat gcactatagg aaggttactt gaaaccataa gatcttttac
     2041 cttggttaaa agcttacgtc ctaaactccc ccctggatga aaaagggcaa aatcatcagg
     2101 cttgaaattt cttaccttca tcaaagcagc agctaaagca tcccccataa ccaaagttgc
     2161 cgttgtcgaa gacataggag caagctgcaa aggacaagct tccttttcga cagctatatt
     2221 taaaaatata tcgccttgct ttacaagggt ggaatttttt ttaccacaca ttactataag
     2281 tggaattttg cgctttttta tagcaggaat gatttttaaa atttcttcag tttctcctga
     2341 atttgaaata gcaattaaaa catcttcaga agttaacatt ccaagatctc catgcaaagc
     2401 ctctcctgga tggataaaaa agcttggcgt tcctgtgctt gctaaagtag ccgctatctt
     2461 agcacctata tgacctgatt tacccattcc actaactatg caacgccctt tagtatttag
     2521 catcaaattc acagcttgat taaaattttc atctaaattt ttagccaaat ctaaaatagc
     2581 ttgcgcttct ttttcaaaaa cttctttggc tatttcaaga gtattcattt ttaaacctta
     2641 aagattaagc acaacattgg ttgcaatagc aatttgataa agaatttgag ttaacattga
     2701 aaaaatttgc aaattctcac tatctacttt tggcaatacc aacacagaat cgcctggttt
     2761 catatctata ccactatgat atttttcagc ttttccattg cttcgtatca ccaaaacttt
     2821 tgaagtatcc gctctttctc cataacctcc tgcaagattg atataatatc ttaaatcttt
     2881 tcccttatca tacacaaaag ctccaggtaa agaaacctcg ccttgaacta taacaagatt
     2941 attcttactt ggtacattga tagtatcacc atcttctaaa ataatcgaat tgtaagactt
     3001 tggattatcg atgacaattt ggccttttgg ttgtacttgc ttagctcttt ggataaattc
     3061 taaaatcgtt tttgcttgtt gagctcttat agctgcgcct tgagctgtaa cagaactgct
     3121 agttaaagct agagtttcaa gctctttaag ctgagcattg ataagttctt tttgagttct
     3181 agctacactt tttctaaaca cttgtaaagc ttgcatgttt gattgtggat taaccttgat
     3241 tagtttagaa atatcttcta aagtcgttcc tttacccaca actaaagttt ttaaaccatt
     3301 atgctcacca tttacactta tagttatatt ttcagaaaca tactcagggt gaaattctac
     3361 ctcatctcct gttctaagta aaacttttga aaattgcatt ttattataag cactgacatc
     3421 aagtttatga tcttcaccat aactttttac gatagcatta gtcacgatag gtttagcacc
     3481 tgatactcta gctaagtcag ctaaagtttt aatatcattt gaaagttcaa aacgaaaagg
     3541 tctttgcaca tcaccattaa caaaagcgta attttgaaca tttcctacta agataacatc
     3601 tccacttcta aaaggaaaaa gatccatttg cccttttaac aaaaaatcat ataaatcgat
     3661 attttttatc acgctgttat tgcgcaaaat ttgaatatct ctaaaacttc catattctaa
     3721 atttatacct cctgctttat caagatactg tatcactgaa tccgaactaa gtccttgata
     3781 aagtcctgga gcattaacgc ttcctgttac aaaaacactg acattttgat aagcattcat
     3841 atctgcataa acaaaaacat tgcttttata gattttatta acacgtgctt ttataacact
     3901 tacaagggca ctatttttca cacctagtaa atttacagct cctactttag ggataaaaat
     3961 atttccttga gaatccaccg ctaaaacttg cgaaaactca acagctcccc aaattttaag
     4021 actgatttga tcaccaactg cgatcttata atctgggtta taaactcttt gattgtaatt
     4081 tttaaaattt ccattaaaaa gatgagcacc aaatactaaa atttgataaa tttttgtaag
     4141 attattttct ttatttgcta tatcataatt tgaacttaaa ttttgatcta tgctagttgt
     4201 agtagaacct tgatcctctg ctgaaatgat ttgtgaaaca tccacggctc caaaacataa
     4261 aatacaacta aaaaataaaa ttaatatttt tttcatttta atacttatgc tcctctatta
     4321 tcattttaat aaatttaaca atcccaaaaa tcaaagataa tacaataaat gctgttaaaa
     4381 tatcataaat tctttcagga tattttgcgc tttctggaat atctggactt tgaataatga
     4441 caagttgttt tatttttctt aatgcttcta ttctagcact ttcataagct tttaaagctg
     4501 cttcataagc tttttgcgca aaagtagctt ctatagttaa atcctgaaat ttagcagcca
     4561 aatcattaag cttttgagaa gaattgttag ctgaaatttt agatttttcc cttaaaagtt
     4621 gttttttaat cgcttcaatt tctgctttaa gtgctactac ttcaggtgct gcatcattca
     4681 tatagctttg taaagttaaa agtttagctt ctttttgagc tagattagcc tcaatttgcg
     4741 caaccaaact tgctttagtt tcagcttgct ttaaaggatc gaaaactcca tatttatttt
     4801 gaaaagcaat cagatcattt tgtgcttttt gatatcgttc tttgtatttt tgcacttcat
     4861 tttcagcaaa agccatttgc tctctagctg ctttatgaga gatttcgttg ataaactttt
     4921 cgctttcttg cataatagtt tgagcaatca aatgagctga tttaggtgta aaaccctcta
     4981 cttcaacttt caaaagttta gtggtttcat ccgtatgaac cttaactctt gcttggtagt
     5041 atttaagata agattctatc gagcttgaat cccaaatttt aaaaggtaaa tctatatgtt
     5101 gttcttggta aagatcttta agtttgattt tctcatccaa aatctttaac atatcacttg
     5161 attctatata accttttaga taatttaaat cttcgtttgc tgtagaagtg ctactaagca
     5221 aagacaaaat tccacttgtt tgagcacttt ctccacttgt tgatctaaca tctaaaatca
     5281 tcgtacttac atatcttggt gctgcaatca atgtataata aatcacaaca aaaatcatta
     5341 taaaccaaac aattttaaaa gaatcaaata tgcttaaatc tttgattttt tctaataaag
     5401 ttttattttc ttccattaag cttttccttg atatacagct attccttcgt ctacatcatc
     5461 gtaaaccgca atttgtccat ttttcatata aattatttta tcacaccatt ctttaatttc
     5521 agctacatca tgagacacca taatcacttt tgatttgctt aatctttctc tatataattt
     5581 cacacttttt tctctaaaag caggatctcc aacagctcca gcttcatcga tcaaataata
     5641 atcaaaatca aaagccatac taagtccaaa agctatccta gcactcattc ccgaagaata
     5701 agtcttcata ggctcatcaa aaaatttccc aagctctgca aaatcttcta cgaattttac
     5761 tttttcttga agttttttac ccttatatcc atacactcta gctacaaatt tagcattatc
     5821 tctagcagtt aaagaacctt gaaaagctcc gtttaaaccc aaaggccaag ataatttttt
     5881 attggtaatt attttaccac tatcaggaag ctctgccccg cttaaaagtc tcataagagt
     5941 ggacttacct gcaccattac cccccatcaa tcctatacta caattttcag gaaattcaaa
     6001 agtaaaattt ttaaaaacat aatgcctccc accgctaaat aaaggataag atttagttag
     6061 attgattaac tttatcattc tttttttgcc gccgttaaag cttgtctgtt atagtaatag
     6121 acaaaaagtc ctataaataa aacaagtaaa atccaaaata tagcataaaa ataactatat
     6181 tcatcttgca aaggataatt ctcaaaaaaa ttaaatctta aaagctccat tatgtgaagt
     6241 aaaggattat aataaaatat atcaagtaaa ggacgaggag ttaaccaagt gggaaatata
     6301 atcccagaac tccaataaaa tactatacta aaataagcta ataaagttct taaaggctct
     6361 acaaaatgcc aaacaatagc aaaacaaatc cccaaagcaa aagctgaaca tataagcaaa
     6421 aaaatacaaa ataaaacacc gagtaaatgg ataggaaata tatcaagtct aaagaaccac
     6481 cctgcaaaaa aaagcacagt gataaaaatc acaaaataaa tacaaaattc aagcaaagtt
     6541 ctagcaataa atacatgtat aggctttaca ggtttatagg caaataaaga taaatttgct
     6601 cctattccat tcataagttg agtaactata cttctaaaca taaaaaaagg cataatgcct
     6661 gaaattaaaa acataaaaat agaaattcct tcaggcataa cttgatgatg atattcccta
     6721 ataacagttc ctataatagt caccaaaagc acaacactca taggctctcc aactacccat
     6781 atatacccaa gatacctatt tttgccaaat ctagttttta attctctaaa aaataaagcg
     6841 tgaattacat tgaacattta ttttctatac ctaacaattt tacataaacc ataatcataa
     6901 ctcatttttt taaacaaaat tataaaaaat ttcacttttt ataaaactca agttttttac
     6961 taagccctaa agtattatct gttaatttaa gccaagaaag ctctaaagca taaatttttg
     7021 cacttttatc aagtttagca aaggggaatt tagaaaaata aattttcatt tgctccttgc
     7081 ttgccatttt aaactcggcc ttagcttgca caccttttaa aaagactatt ttattctctt
     7141 tggctatatt aactgcaatg ctagaatttt tacttgccaa tcttatatgc ttagtatctt
     7201 catgagaagc aataataaaa gctaaattct tctcatcaaa aacataaaaa gcactagctg
     7261 tataaacacc tttttcatca atcatagccc aagataaaag ctgctcattt tttataaatt
     7321 ctaaaattct ttcatccata ttgtaaaaat tatactaaaa tatttttaaa aataaccgat
     7381 tataatttta taaactataa atataagggg aagaaatgca aattgatgct agcaaaaacc
     7441 aaagtttttc gatggattat acaacaaaaa gtggcaaaca tttagcctta tctatgtatg
     7501 acaatcaaag cgtaagttat gcaaataatg aagaaggcaa gactcttaat cttaagcgtc
     7561 agtatggctt tagctttact tttgaaggct ctaagctcac acaaaatgat cttgatgaga
     7621 ttaaaaatgc tatgaaagaa gttgaaccta tgatcaaaga ctttttagca aattctaaag
     7681 tcggagagtt aaagccaaaa gaaattatag aatcagctat gcaaatggca aatgttctac
     7741 caacaccaaa tgatgaaaac catcaaaatg ctattatgaa taattttaca aataaactca
     7801 gtgatttact aaaacaaaat caaacagatg ataaagatat caatgcttct atgcttgaag
     7861 atagtaaaaa actcctcgat gaagttttag aacaaatgaa aaaacaactt gaaaaacaac
     7921 aagaaaaagc caaggaaaat caagataaga cagatgatag tttaaatctt tacgcttaaa
     7981 tcatataata ttaaaaatta tcaaggagtt tttaaatgac aaatatcgaa attttagaaa
     8041 atatgctcaa actccaacaa aaactcaacg acgaaacaaa cggcttaaat tgggaaaatg
     8101 gctacaccaa agaaggaaaa ctgatcagtt ggagacgctg tatttatatg gaatgtgcag
     8161 aacttataga ctcttttgca tggaaacatt ggaaaaacat ttcaagtcca acaaattggg
     8221 aaaatgtacg catagagatt gttgatattt ggcattttat cttaagtctt ttacttgaag
     8281 aatatcgcaa taaaaacgga aatgatttta aaattatagc caatgaagtg atttcagtga
     8341 gtgtatttca ggatttttgt aaagaagaag agcatcctaa tgagagtgat atttatggta
     8401 ttttaaatga catagagctt attatccata aatgcagtgg ttttggattt aatcttggag
     8461 aattactttc aacctatttt accctagcta ttaaatgtgg gcttaatctt gaaattcttt
     8521 ataaaaccta cataggtaaa aatgttttaa atatctttag acaaaaccat ggttacaaag
     8581 atggtagcta taaaaaaact tggaatggca aagaagacaa tgaagtttta gctcaaattt
     8641 tagaacaaga gcttgatttt gatactattt ataaaaaact agaagaatgc tacaaaaagg
     8701 cataatttgg atattttaaa acttgcaatc aaagattttt taagtcttaa atttttaaaa
     8761 tttgccttaa ttcctttgat ttttagcctt atactgatgc tttttttagg agtacttggc
     8821 ttttcggcct tgcttgatta ttttaattct ttatttagcg ttggagaaga ttcgttttgg
     8881 gcgtggtttt atgcccttca ttttgtacaa attttaatca ccatcataag ttttttattt
     8941 tcaggtttta ttgttgtttt tgcttcggtt tttttagccc tttttatcac ttcttttctt
     9001 actcctttta tcgctaaaga aatcaaccaa aaatattacc attatgataa tacaaacgaa
     9061 gtttcaaccc taaaaactat ctttgaaatt tttaaaatat ttataaaatt tatagggatt
     9121 ttattgcttt gcaccttggc tttattttta ccttttatca atatttttgt atattatctt
     9181 gctttttatt atctctttca caaactttta atgattgatg ttacaagcac gattttagac
     9241 aaagaaagtt ttaaaaattt tcattctgat ttttcgcctt tagagtttaa atttagcact
     9301 ctttgttttt atctactctc atcagtacca cttttaggac tttttttgca agtgtttttt
     9361 gtgatttttc tcacacattt aggctatcaa agaattttaa aactaaaagc taaggcttga
     9421 aatatcgatt ttatgattgt ataaataagc tcttaaaagt cttggaattt tagctattct
     9481 acactcttct ttaaaatttt taggtaattt ttgacaagtt tcatactcaa aaacaatagc
     9541 ttgttcgttt ttatatacaa gtgctatttt accacctaaa acacaatcac cttttaaaag
     9601 ctcttttctt tgtgccgtgc ttaaaagcaa acctttcatt ttcaccgctc tagcaatcaa
     9661 actttcattt ttagggcaaa taagaagtcc ttgaatttct ttgatatttt caaaatcata
     9721 aagttttttc ctatctttat caagataaga aaaacttctt tttaaaccct gatgaaattc
     9781 actcacaaag gcattagaga aattttttct tatataattt ctaaaatatt tttcattttc
     9841 attactttca tcatggaaat aaaaaatatc tttttctttt aaaaaagatg aaatttcatc
     9901 tttacttata aagagtaaag ggcgtaaaag tgtataattt gagcgttttt cacactcttg
     9961 catacctaaa atttcagcca aacctgcgcc tcgtgaaagt tgcatcaaaa accattcaaa
    10021 ttgatcgttt aaatgatggg ctaagataag atggtcataa ccttgctcaa gacaaatttt
    10081 ttcaaaaaaa tcatagcgaa aatctctggc ttttttttca aagttacttt gaaatttagg
    10141 agcgtgtttt atgaaaattt ttttatgaaa ttttaaagca agttctttgg cttttaactc
    10201 ttctaaatca ctattttttc tagttttgta atttatcatc acaagatcaa agtcgatctt
    10261 ttcttgcatt aaaagataaa aaagcacact agaatcactt ccataagaaa aagcgagtaa
    10321 atttttaccc ctttttaaaa gggctaaaat ttcatcttta atttgcatct acttttctta
    10381 aagccttagc aaggagtttt ttatcaaggt tttgtaaaat ttcacattca taaatttgcc
    10441 ccatttccaa atttccacat tcgctttcat taataagaat ttccccatca atctctctat
    10501 cccatcttag atctttagct gcgataaaaa actctccctc gctactttct cctgtgcaaa
    10561 ctactaaacg cttttgccct acttcttttt caaaactttt ttctatcact tcatcaacaa
    10621 ttttttctat gattttaagt cttttattga tcactttaaa aggcacttgc tccatatcaa
    10681 aagcggctgt atcttcttcc ttagaatacg caaaaacgct tatcctatca aaaccaaaat
    10741 ctttaacaaa ctcacaaagc tcttcaaaat ctgcctcact ttcacctgga tgccctacga
    10801 taaagcccgt gcgtaaaaag ctatttggcg cacttttcat taaatttagc atttctttaa
    10861 gtcttgtgtt atttgcccca cgcttcatga ttttaagcat attatcactt atgtgctgca
    10921 aaggcatatc aaaataattt acaaaaattt cagaagctat aatgcgtttg atcaaagctt
    10981 cactcgcact cgtaggataa agatataaaa ttctagccgc tcttatacct ttgatttttt
    11041 cgacctcatc gattaagcgt ataagtccat ctttttcacc cttatcaaac aaataagaac
    11101 ttgtatcttg tgcaataaaa gaaaagtcct tataacctct agctaccaaa tctttaagct
    11161 cagctacaat gctacttatt tcgcgagatt ttaacttgcc tttaaaactt ggaatagcac
    11221 aaaaagaaca tttttggttg caaccttcgg caatttttat aaaagcatgg gaatttgaac
    11281 ctgtgataat gcgtttggaa ttttcactct gtaaataagt cgaatttgaa aataaatttg
    11341 tttttttaag tatcatttcg tcgattcttt cataatcacc cacacctgtg aaaagatcaa
    11401 cctcaggaag ttctttcata agttcttcgc ggtaacgctg catcaaacaa cccgtaacca
    11461 ccaaaagaga atcttttttt ctttgttcgt gcaaatccaa aatcgcatta atactttctt
    11521 tttttgcgct atcgataaaa ccacaggtat ttacgattaa aacatcggct ttacttggtt
    11581 catcgcaaag ttcataagca ctaaggcgcc ctagcatgat ctcactatcg actaaatttt
    11641 tattacaacc taaagacata agataaagtt ttgacatttt tttcctatat taaagttttc
    11701 ttttgatata atttttgact ttaaaaatat aattatagca aagaaatttt atggataatt
    11761 acgaatttag cgaactttta aaaactttaa aaaacaaagt cggcaacata gcctccatca
    11821 tcaagcctga aaatatccaa acaaggctta aagaaatcga agagcttgaa aattctcctt
    11881 ctttttggag cgatgtaaaa caagcaggga tcataggcaa agaaaaaacc aaaatcacca
    11941 atctacttaa aaactatgaa aatgctttta atgccctaaa tgacgcaagc gaactttttg
    12001 atctggctaa tagcgaaaac gatacagaaa cgcttgaagc tttatttaat gacgcaccaa
    12061 aacttgaaga taccatcaca agtcttgaaa tttccatgct tttaagcgga gaaaatgatg
    12121 gtaaaaatgc tattgtttcc attcacccag gtgcgggtgg aacggaaagt aatgactggg
    12181 caagcatact ttatagaatg tatttaagat tttgtgaaag agaaggtttt aaagtcgaaa
    12241 ctttagactt tcaagaaggc gaagaagcag gacttaaaga tgtgagcttt ttagttaaag
    12301 gagaaaatgc ttatggttat ttaaaagctg aaaatggtat ccatcgtttg gtaagaactt
    12361 ctccttttga tagtgcagga cgccgccata caagcttttc aagtgttatg gtaagccctg
    12421 aacttgatga tgatatagaa attgaaatcg aagaaaaaga cataagaata gattattaca
    12481 gagcaagtgg tgcaggcgga caacatgtca ataaaacaga atcggctgtg agaatcacgc
    12541 attttccaac cggcatagtt gtacaatgcc aaaatgacag aagtcagcac aaaaacaaag
    12601 ctaccgcttt taaaatgcta aaatctcgcc tttatgaact tgaactcatg aaacaacaag
    12661 atagtgctaa tgccggagaa aaaagcgaga taggctgggg gcatcaaatc cgctcttatg
    12721 tacttttccc ttatcagcaa gtcaaagaca atcgcagcgg agaagctttt tctcaagtgg
    12781 ataatatcct tgatggagat atcaaaaaaa tgatagaagg cgttttaatt gccttaaaag
    12841 cggagtaaca ggcttaaaaa taagtaattt ctgcaaagtg tcggtataaa aagaattaga
    12901 aagatagcgg gaatttcccg cttgttttat tatcttgcat aaaacctaaa agcatcattc
    12961 acagaacaat aaattctttt cttaaagtct ttatcgcaat aaacactcac aactttatag
    13021 tcttttttat cgtttggatt taataagaaa acatagtttg agtatggagt tttatctatt
    13081 tctaaatcac gcttcatttc tttgatttta ccttctggat ctttaaaatc actaattgct
    13141 ctgactgaag tataatcata aagcttataa tttggatatt ttttcataat ctcttgatta
    13201 cctaaatcaa acatagcttg atcgttgcca ttgttcttta actcgactaa atcgccatcg
    13261 ccacaaccta taatcaaagt catagctcct aaagccaaag cacttgttaa aatctttttc
    13321 atttttactc ctattttaaa aattaaattg atataattat acctaaattt aaaatttaaa
    13381 tatcattttt gcaataaatt ctaaagtaaa aatcacataa aatttaactc acaatcattt
    13441 cattcaaaca aatttttatg caaaatttct tctaaaacca cagtggcata agaacctttt
    13501 tgcaagaaaa actctataca aaaatgagct ttttcttcat cataacgcca ttttaactct
    13561 tctaaatatc cccacataaa gcgtcttgaa ccttgcattt tagccttaaa ctccaaagca
    13621 tctttaaaaa tttcattttc taaatttaag gccaaacctt ctcctgtttc ataagcctta
    13681 gcaccgatta aaagccccat agcgcttata tctcttgcct taaaacgctc aagctcagca
    13741 ctcaaatcct cacataaaaa acattttcca aaaggataat gccctaaaac ctcacctttt
    13801 aaaagcttaa aaaattgttc ttgtttttta agctccttag cttcttcttt agaaatttta
    13861 taaatttgga tcaattcttt ttcgctaaaa tcatttgcaa aatgtgacaa ctccactctt
    13921 ttactcaaat agcgattaaa aagctcactt tgaaaagctg aaattaaaaa ctctttcatt
    13981 tttacatttt tcatcttttt accacgcaaa atttcaaacc cttctttata attatcccca
    14041 aattttccaa aacgctgata accaaaataa ttcgcgaaac cttgtttatc caaattcatc
    14101 aaagcttgtt ctagttttaa agcatcgctt ggtaaaactt tttttaagcg tatgaaaaaa
    14161 gtatttcctt ttaaatgccc tattcttagc ttgttttcat gggtaaaaat ttctaaaatt
    14221 ttaagtttag gatgagaaaa atttgacaaa aaactctcaa attttttagg catagaaagg
    14281 tattgaaagg ttgatccttg cttatcttta agccctgcat aaccaaaatc tcttatttta
    14341 accccgcttg tttcgcttaa aatttttaaa gcttcatttg tggttaaatc ttttttattg
    14401 atatgcaaaa taagatgttc acccttaccg ctaaattcat acaaaggcct ttcacgcact
    14461 acaaaatcat cgctattttt actaaaatac gcattaatag gactgtgttt taaactatac
    14521 aaaggcttaa aaatggtgtt ctcttcctct aaattcatat tttcctttca ctgcttttcc
    14581 aaagatattt aatttcacgc cgtgtttttt ggctattgtt tttatatttt gacgctcttt
    14641 ttcatcaaaa gcaaacaaaa tttcatattc ttctccgcta taaagcgtat aatcatcaag
    14701 ctttttaaac caagaaatac cgcatttatt taaggctaaa agtcttgata aatccttgct
    14761 taaaccatct gaaatatcca tagcacaaga aattaaaggt gcgacttcat aaaaaaaact
    14821 agctcttaat tttggcttta taaatacatg gtttggtttt aaagtgcccc cattttgtaa
    14881 aatttcaagc ccttttaaac ttcgtcctaa ttttcccgta taagcaagta aatgcccctt
    14941 ttttaaacct tttctaaaaa cagctttatc gttaatcttt gaaatgatag taagactaat
    15001 gtctatttta tcattgctta tagtatcacc gcctatgatt tttatattaa atttcctagc
    15061 tgtttttaaa aaaccttttt gcaaggcttt gatctcattt tcgcttaaat tttttggtaa
    15121 agcaagtcct aaaagtgcgt attttggtac agcattcatt gaaatagcat ctgagatatt
    15181 aacaagcatt gcttttgtag caatttgctc taagctaaac cactctcttt taaaatgcac
    15241 attttcaaaa aacaaatcct tactaaaaca ccaatcatca ataatagctc catcatcgcc
    15301 atttttttca tttaaaaaag cttt
//
LOCUS       DAEDTT010000034        14928 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.034, whole genome shotgun sequence.
ACCESSION   DAEDTT010000034 DAEDTT010000000
VERSION     DAEDTT010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14928
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.034"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..320
                     /locus_tag="KLC54_000760"
     CDS             <1..320
                     /locus_tag="KLC54_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HBD9177151.1"
                     /translation="LKLCELLNSNLSGFNLKKIKKPIIKKDELKLDLNYSKMYAKLGL
                     NTKDQQGLMAYLMNVFNELELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVNLL
                     ISE"
     gene            325..2121
                     /gene="glmS"
                     /locus_tag="KLC54_000761"
     CDS             325..2121
                     /gene="glmS"
                     /locus_tag="KLC54_000761"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HBD9177152.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFEFYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDVLKSLSFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MIITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            2256..3647
                     /gene="fumC"
                     /locus_tag="KLC54_000762"
     CDS             2256..3647
                     /gene="fumC"
                     /locus_tag="KLC54_000762"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HBD9177153.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFVSSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESAMELGLVGEEDFN
                     KFVDPTKMIGPKA"
     gene            complement(3677..4720)
                     /locus_tag="KLC54_000763"
     CDS             complement(3677..4720)
                     /locus_tag="KLC54_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HBD9177154.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITM
                     FYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(4724..5731)
                     /gene="ruvB"
                     /locus_tag="KLC54_000764"
     CDS             complement(4724..5731)
                     /gene="ruvB"
                     /locus_tag="KLC54_000764"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HBD9177155.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            5822..6232
                     /locus_tag="KLC54_000765"
     CDS             5822..6232
                     /locus_tag="KLC54_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HBD9177156.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            6233..6591
                     /gene="ssrA"
                     /locus_tag="KLC54_000766"
     tmRNA           6233..6591
                     /gene="ssrA"
                     /locus_tag="KLC54_000766"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            6794..9049
                     /gene="capC"
                     /locus_tag="KLC54_000767"
     CDS             6794..9049
                     /gene="capC"
                     /locus_tag="KLC54_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter adhesin CapC"
                     /protein_id="HBD9177157.1"
                     /translation="MKKNASSKILLSLGVATLLYSGAFAAEITFNGDSDLDKYFDINE
                     KDNVATFKNENYKNKQDVTFNISTSAFDDAPEDTKINIDLGNNSLTLKNQMDYQGKTA
                     ALVKNFNVDAKDFKTTDIGLSYFNAGIINANFTMEGSGKDFDLGNIDKNKASSLLIFN
                     GSRENTNDTVNGSLTVNGDFSTTNSAIVSMKSDTFKVNGTATLKEAGLGFLSQSYSNL
                     DVNDFIALRAKDIKTDTLNEDTNAGALILKTASSYINENLLNGDDYAAYLDVTDDKKY
                     GGAFVDYKLSLKNCGGDKCLVINGGATAAAKNLTNQIAVDLEAITRIIDGLDNEQAKK
                     ALQEQKTELEKLQQEAMQNGGKIDDEKYIDLVNKNSNLNLSANDKASILVLRSITEQL
                     GSIGADLASREGVKLALQIKKDTDNTGKSVSNFNSASSAVNTTMNISNDVSIGSRVAM
                     LNNPFGTYASKMNGLKFAALDSDMRPSYVNEYTNSVWANAFGGANIIDGDSGAMYGAT
                     VGVDKQANDNVLWGAYFTYANAKIKDNNLEQKSDNFQLGMYSTINIAPQWELNLKAYA
                     QVSPTKQDNVQVDGAYNSDYTSKFLGLSANAGRVFDLSDNTLFIKPFAGVNYYFSYTP
                     SHTENGAIAKDIDSMKNNSVSVEVGAEFRKYMNENSYIFVTPKIEQFVINSGDDYTAN
                     LAVNNAFFTSVEANNKKKTYGQIIVGGNVDFTNQLSMNLGFGAKQILAGKVDNKNETY
                     LSGQVGLKYKF"
     gene            complement(9191..11275)
                     /locus_tag="KLC54_000768"
     CDS             complement(9191..11275)
                     /locus_tag="KLC54_000768"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HBD9177158.1"
                     /translation="MQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKLKFIAIYCT
                     NLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLERYFNEITS
                     ELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLNNLSFSLAV
                     KICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPGYKLLASAA
                     FRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVEFLNTHMKI
                     FHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAVEKEDIL
                     IIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGKQVTVMV
                     ELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLKFYMHLSTG
                     NYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKVLE
                     MIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCLKPDEEYSK
                     NIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKL
                     AQFLRLQLSDNVLAYELKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTLKKDTDQSR
                     ATHLASKLFKEN"
     gene            11462..11977
                     /gene="nrfH"
                     /locus_tag="KLC54_000769"
     CDS             11462..11977
                     /gene="nrfH"
                     /locus_tag="KLC54_000769"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HBD9177159.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            11992..13824
                     /locus_tag="KLC54_000770"
     CDS             11992..13824
                     /locus_tag="KLC54_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HBD9177160.1"
                     /translation="MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQIDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADTKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            13960..14514
                     /locus_tag="KLC54_000771"
     CDS             13960..14514
                     /locus_tag="KLC54_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177161.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEYLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQN
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            14578..14667
                     /locus_tag="KLC54_000772"
     tRNA            14578..14667
                     /locus_tag="KLC54_000772"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:14612..14614,aa:Ser,seq:gct)
BASE COUNT         5170 a         2134 c         2648 g         4976 t
ORIGIN      
        1 aactaaaact ttgcgagctt ttaaattcaa atctttctgg ttttaatttg aaaaaaatta
       61 aaaagccaat cattaaaaaa gatgagttaa aattagactt aaattattct aaaatgtatg
      121 ccaaattagg tcttaatact aaagatcagc aaggtttaat ggcgtatttg atgaatgttt
      181 ttaatgaact tgaacttgtt ttatgtgcag caaaaattca aaccataaga caaaggacgc
      241 gtaatatttt tatttttcaa aagaatgaaa aattagaaca tagcgagcaa aagttagtta
      301 atttattaat aagtgagtaa aaaaatgtgt ggaatcgtag gctatatagg aaataatgaa
      361 aaaaaacaaa ttatactaaa tggacttaaa gaattagaat atcgtggcta tgatagtgcg
      421 ggtatggcag tgatgcaaga aggagagctt agttttttta aagctgtagg aaaacttgaa
      481 aatttggcga ataaatgcac ggattttgaa agtcaaggtt atggttttgc tataggtcat
      541 acaagatggg caactcatgg taagcctact gaaatcaacg cacatcctca tttaggacag
      601 tattcttgtg tgattcacaa tggtattata gaaaattata aagaaatcaa agataaactt
      661 gaaaaagaag gcgtgagttt tttaagtcaa acggatactg aagttattgt ccagcttttt
      721 gaattttatg caagaaattt gggagttttt gaagcttggc aaaaaaccat caaagaactt
      781 cgcggtgctt ttgctacttt gttagtaaca aaaaaagatc ccaatcatgt gtattttgca
      841 aaaaatgctg cccctttgat tatcggtaaa aatgcaaata aagaatggta tttttcttca
      901 ggtgatgcac ctttgatagg aagttgtgat gaggtaatgt atcttgaaga tttaagcttg
      961 ggatacgcga gtaaagatga gcttgtcgtt tatgaaaatg atgttttaaa atcactttct
     1021 ttttctaagc tttcaggcga taaggcttat gcaaaaaaag acggctttcg tttttttatg
     1081 gaaaaagaaa tttatgaaca aagtcgtgtg atgagtgaag tgttaatggg acgtattcaa
     1141 ggcgatgaag tcgtttttga tgagctaaat aatgaagatt taagtcaagt agatgaaatc
     1201 acgctttgtg cttgtggaac aagctatcat gctgcaatgg caagtgctta tttgtttgaa
     1261 agaattgcta aagttaaagc taaagtagaa attgcaagtg aatttcgcta ccgtgaagca
     1321 attataaaaa aagattcttt atttatcgtt atttctcaaa gtggagaaac agcagacact
     1381 ttagaggctt taaagattgc aaaagagcag ggcgctaaga cttttgcaat ttgtaatgtg
     1441 gataattcta atatagtgcg tttagcacac ctaagtcttt taactcgtgc gggtatagaa
     1501 aaaggagttg cttcaactaa agcttttgcc actcaggttt taacactttg gatgcttgct
     1561 atttttatgg cacaaaaaag aaatttaaat gtttctgctg aaattaaagc acttttgcat
     1621 actccaaatt gcgtgagtgt aaaacaggct ttacatgaaa aaattcatcg tttatctaag
     1681 cgttatttag atggacatgg ctttttcttt ataggcagag atgtgtttta tcctttggct
     1741 ttagaaggag ctttgaaact taaagaatta tcttatcttc acgctgaggg ttatcctgca
     1801 ggagagatga aacatggccc tattgctttg gctgattcta agctttatac tatagcttta
     1861 atgccaaagc acatgcttta tgaaaaaaca aaatcaaatg ttgaagagct tattgctagg
     1921 gattctacag tgcttagcat ttcaccttta gaatttgatt taagtgatga ttttataaaa
     1981 accaatgagc aagatcatta tatgtgtgaa ttttttgaaa tgatgatcat tactcaactt
     2041 ttggcgatgg aaatttccat aagacttggt aatgatgtgg atatgccaag aaatttggct
     2101 aaaagcgtaa cagtcgaata atccgtgcag tttaaataaa ctgcacataa ctttcaaata
     2161 cttcaaaaaa atataaataa attttaaatt ataagctaac tttatgctta tttttgttta
     2221 aataattcta acaatatttc tagaaaggaa acactatgga atatagagtt gaacacgata
     2281 ctatgggtga agttaaggtc ccaaatgaca aatattgggg agctcaaact gaaagaagtt
     2341 ttgaaaattt caaaatcggt tgtgagaaaa tgccaaaggt tttaatctat gcttttgcaa
     2401 atcttaaaaa atctttagct ttagtcaata acaaacttgg caaacttgat gatgctaaga
     2461 aaaatgctat agttcaagct tgcgatgaga ttatcgcagg taaatttgat gataattttc
     2521 cacttgcgat ttggcaaaca ggttcaggca cacaaagtaa tatgaatatg aatgaagtta
     2581 ttgcaaatcg tgccactgaa atcatgggcg gagattttcg caaagaaaag cttgtacatc
     2641 caaatgatca tgttaatatg agtcaaagtt caaatgatac ttttccaact gctatgagta
     2701 tcgttgcggt tgagcaagta gagaaaaagc ttatccctgc gcttgatgag cttattgcaa
     2761 cttttgaaaa aaaagtaaaa gaatttgatg gtattatcaa gataggacgc acgcatttac
     2821 aagatgctac gccacttact ctagcacaag aatttagtgg atatctttct atgcttttgc
     2881 attcaaaaga gcaaatcatc gcttctttac caactttaag agaacttgcc ataggaggaa
     2941 ctgcagtagg aacagggctt aatgcacatc cagaattaag ccaaaaagta agtgaagagc
     3001 taactcaact tataggtacg aaatttgttt caagtccaaa taaatttcat gctttaacaa
     3061 gtcatgatgc gattaatttt actcatggag ctatgaaagg tttggctgca aatttaatga
     3121 aaattgcaaa tgatataaga tggttagctt caggcccaag atgtggtctt ggtgagctta
     3181 tcatccctga aaatgagcca ggaagttcga ttatgccagg taaggtaaat cctacccagt
     3241 gcgaagctgt tactatggtt gctgtacaag tgatgggaaa tgatgcagct atcggatttg
     3301 cagcaagtca aggaaatttt gaacttaatg tgtttaagcc tgtgattatt tataatttct
     3361 tgcaaagtct tgatttgttg gctgattcta tgcattcatt caatatccat tgtgctgtag
     3421 gtatagaacc aaatcgtgca aaaatcgatc ataatcttca taattcttta atgctagtta
     3481 ctgctctaaa tccacacata ggttatgaaa acgctgctaa agtagccaaa aatgctcata
     3541 aaaaaggtat ttctttaaaa gaaagcgcaa tggagcttgg tttggttggc gaagaagatt
     3601 tcaataaatt tgttgatcct actaaaatga taggcccaaa agcctagaac ataaaacttg
     3661 ccttttttaa ggcaagttaa attaaattct tatcttttaa aatcacatac attcttaaag
     3721 ttgatacaaa aaaggttaaa atcgcaggac ctagtataat accccaaaaa ccaaaggttg
     3781 aaattcctgc tatcatagcc aagaaaatta aaagttcgtt gattttggta ggggttttta
     3841 caagtttttt gttgatccat ttgataatta aaggtttgat taaagtatct gctataaaag
     3901 aaattacaat tacagaataa ataaaaataa caagagctga gttaagattg tttgaggcaa
     3961 attcataaag acttacaggc acataaatta aagctcctcc tatagcaggt atgagagaac
     4021 ttacagcaaa aattactccc attaaaattc catcataacc ataaaacatt gtgattaaac
     4081 caaaaagtgc accttgaaat attgctacaa ttaccataga gtaaagcaca acagccataa
     4141 cattacccac ttcgcttaaa acatcatcga gttctttttt atcaatggga atgatggatt
     4201 taagatagat aacaagttct gttccatata gatttgcaaa gaaataaaac acacaaatta
     4261 aaaccatatc tataagaaat ttagctcctg attttgtaaa acttgaagca taacttagaa
     4321 tttgtttaga aatgctattt aaatctatag aagctaaaaa ttctttgatt ttaggttcta
     4381 aaaaattaaa gctttcaggc aaagtaaatt gatagttttt gacataatca agtgtttgtg
     4441 tgactaaatt aatatcaaaa ttttttaaag ctttggcaag ttctatcata gcataaacaa
     4501 aaggtgcaaa gaaaagcaaa accatacaag ttgttgtaag aatggaagct aaaaatttat
     4561 gccctttagt aagatttaaa aatttcgcat tgatatttga ggtagctacc gccattaaac
     4621 tagctatgat aattacaagt aaaaaacctt taaaaaggta aagcaaaaga aataaaatga
     4681 ctaaaataaa gcttataaga aagaattttc cattttgcaa aatttactcc tcaaataaag
     4741 ttttttcata gtttagtttt aaagcactat agctttttgc actcgctata cgcccttttg
     4801 cagtgcgttc tatatagcca ttagctagta aataaggctc gattacatct tctatggtat
     4861 tttcatcttc gcttaaagcc gcagcaatac ttgcaagtcc gataggtttt tgcttagcag
     4921 cggttaaaag ttcaagatat cttaaatcca tcgcatcaaa accaagctca ttaactccta
     4981 aagaatttaa ggcctcatta gctctttttt ctgtgataat ctcttcatca ttaacatcag
     5041 caaaatctct aactcttttt aaaagcctta gagctattct aggagttgaa cgacttcttt
     5101 tagcgatctc aagtgcggct ttttcttcac aagttttatt aagttttaaa gctgcttttt
     5161 gcaagattag ggcaagttcg ctatctttgt aaaattctaa tctaaattgc ataccaaaac
     5221 gatcacgtaa aggattgcta agcatacctg cacgcgttgt agcccctata agagtaaatt
     5281 ttggtaaatc gatttttata gtttgagcag ctgggccact acctataatg atatcaaggc
     5341 ggtaatcctc cattgcaggg taaagcactt cttcgatagc agggcttaag cggtgaattt
     5401 catcgataaa aagtatatct ccttcgctaa gattggttaa aatggctgct aaatctccgc
     5461 ttttttctat cataggagcg gcggttgttt tgatatttgc acccatttca taggagatga
     5521 tattagctag tgttgttttt ccaagtcctg caggaccgct aaaaagtata tgatctaaac
     5581 attcattgcg ttttttagct gcagctataa agacatttaa atttttttta atgctttctt
     5641 gacctatata accatcaaaa tttgaaggac gcaacgaagt ttcgtaagtt tcatcaaagg
     5701 agtatttttc tatttctact attctatcca tatctttgct tatattttgg aaaaattaaa
     5761 ataagatttt agctaaaatt tgctagaatt tacattaaac tttaatgatt atggtttaaa
     5821 aatgggaatt ttaacaaaat tagaattaga ttatgaaatt gacgatatag aaaaattttt
     5881 gcaatttttt agaaccatgt gcgataggtt tgaaccttta atcatcaagc ttggaagcga
     5941 tagtgtgcgt tataaagaag ccataaaaga gcttgaaact ttagcacaca ataccgcttg
     6001 ggcagcaaga cgcttaaatc ttgaagaagt gactgatttt tgtgtatttt gtgaagagat
     6061 gatggcgcaa gcaaatcgct ttaatgggcc tgctagtgat gaatttacgg attggatgct
     6121 tttgatgagt gatcagtttg aaaaatattg tcgttcatat gaaaatgatg attctgtttt
     6181 agcggttttt aatcctttaa ttgttaatgt tccaaatatt atttctaaat aagggagcga
     6241 cttggcttcg acaggagtaa gtctgcttag atggcatgtc gctttgggca aagcgtaaaa
     6301 agcccaaata aaattaaacg caaacaacgt taaattcgct cctgcttacg caaaagctgc
     6361 gtaagttcag ttgagcctga aatttaagtc atactatcta gcttaatttt cggtcatttt
     6421 tgatagtgta gccttgcgtt tgacaagcgt tgaggtgaaa taaagtctta gccttgcttt
     6481 tgagttttgg aagatgagcg aagtagggtg aagtagtcat ctttgctaag catgtagagg
     6541 tctttgtggg attatttttg gacaggggtt cgattcccct cgcttccacc atcacgctaa
     6601 ttttaagtaa atcataagtt tatttcaaat ttttagaatt ttttatatga agttaagatc
     6661 gatttattac ccttaaagct ttgatatatt aggttttata atttttcatt aaaaatttat
     6721 agttttattt ttaagcttat ttttaggggg gtataatttt tccttcagtt taaatttatt
     6781 gaaggagaaa cttatgaaga aaaatgcttc gagcaagata ttgctaagct taggtgtagc
     6841 aactttgctt tattcgggtg cttttgcagc agagattact tttaatggcg atagtgattt
     6901 agacaaatat tttgatatca atgaaaaaga caatgttgct acttttaaaa atgaaaatta
     6961 taaaaacaag caagatgtaa cttttaatat cagcacttca gcttttgatg atgcccctga
     7021 agatactaaa atcaacattg atttaggcaa taattcttta actttgaaaa accaaatgga
     7081 ttatcaaggc aaaacagctg ctttagtaaa aaatttcaat gtagatgcca aagattttaa
     7141 aactactgat ataggactta gttattttaa tgcaggaatt attaatgcta attttacaat
     7201 ggaaggttca ggtaaagatt ttgatcttgg caatatagat aaaaataaag cttcatcttt
     7261 gttaattttt aatggtagca gagaaaatac taacgatact gtaaatggca gcttaactgt
     7321 aaatggagac tttagcacaa caaatagtgc tattgtttca atgaaaagcg atacttttaa
     7381 agtcaatgga acagcaacgc ttaaagaagc aggtcttgga tttttatctc aatcttattc
     7441 taatttagat gtaaatgatt ttattgcttt aagagcgaaa gacataaaaa cagatacact
     7501 taatgaagac actaacgcag gagctttgat tttaaaaact gcaagttctt atataaatga
     7561 aaacttgcta aatggcgatg attatgctgc ttatcttgat gttacagatg ataagaagta
     7621 tggaggtgcc tttgtggatt ataaacttag ccttaaaaac tgtggtggtg ataaatgctt
     7681 agtgattaat ggaggtgcta ctgcagcggc taaaaattta actaatcaaa tcgcagtaga
     7741 tcttgaagct atcactagaa tcatagatgg tttagataat gagcaagcca aaaaagccct
     7801 acaagaacaa aaaactgaac ttgaaaaact tcaacaagaa gctatgcaaa acggtggcaa
     7861 aatcgatgat gaaaaataca ttgatttagt aaataaaaat tcaaatttaa atcttagtgc
     7921 taatgataaa gcttctattc tagtacttcg ttctatcaca gaacaattag gaagtatagg
     7981 cgcagattta gcaagtagag aaggtgtaaa actagcccta caaatcaaaa aagacacaga
     8041 caatacaggt aaatctgtat ctaatttcaa ttcagcttct agtgcagtta ataccactat
     8101 gaatatttct aatgatgttt ctataggttc tcgtgtagca atgttaaaca atccttttgg
     8161 aacttatgct tctaaaatga atggccttaa atttgctgct ttagatagtg atatgagacc
     8221 aagctatgta aatgaatata ccaatagtgt ttgggctaat gcttttggtg gtgctaacat
     8281 tatcgatgga gatagtggtg caatgtatgg tgctaccgtg ggagtagata aacaagctaa
     8341 tgataatgtt ttatggggtg cttattttac ttatgcaaat gctaaaatca aagacaataa
     8401 tctagaacaa aaaagcgata acttccaatt aggtatgtat tctactatca atatagctcc
     8461 gcaatgggaa cttaatctta aagcttatgc tcaagtttct ccaactaaac aagacaatgt
     8521 tcaagtagat ggtgcatata actcagatta tacaagtaaa ttcttaggac ttagtgctaa
     8581 tgcaggtcgt gtatttgatc ttagtgataa tactttattt attaaacctt ttgcgggagt
     8641 aaattattat tttagttata ctccatctca tacagaaaat ggtgctattg ccaaagatat
     8701 tgattctatg aaaaataatt ctgtaagtgt tgaagtgggt gctgaattta gaaaatatat
     8761 gaatgaaaac tcttatattt ttgtaactcc aaaaatagaa caatttgtta tcaatagtgg
     8821 tgatgattac acagctaacc tagctgtaaa taatgctttc tttactagtg tagaagctaa
     8881 caacaagaaa aaaacatacg gacaaattat cgtagggggt aatgtagatt ttacaaatca
     8941 actcagtatg aatcttggct ttggtgctaa acaaatacta gcaggtaaag tagataataa
     9001 aaatgaaact tacttaagtg gtcaagtagg acttaaatat aaattttaat cttaaaaatc
     9061 atttctaaat ctttttatag tttagaaatg attgtttatt tctatgggaa atctcctagg
     9121 gctttatctt aaagcccttt tttataacaa acaagtaaat aagtctttag agtaaaaacc
     9181 ctaaaaactt ttagttttct ttgaaaagtt tggaagctaa gtgcgttgca cgactttgat
     9241 ctgtatcttt tttaagtgtt ttataaattt tacttacata ttcttctaag gtttgttgag
     9301 aatctatgat tttttcagaa gaaggaattt tttcatactc tccattgttt ttaagctcgt
     9361 aagctaaaac attatcacta agttgcaagc gtaaaaattg agctaattta gctttacttc
     9421 tttcatcata tataggagtc ataagttcta agcgacgctc taaatttctt ggcatccaat
     9481 ctgcactcga tataaaataa tttggctcac tatgtttaaa ataaaatact ctagcatgtt
     9541 ctaagtattt tcctatgatg cttctaacgc gtatgttttt gctgtattct tcatcaggtt
     9601 ttaagcaaca aattccgcgt atgataagat cgatttgcac tccttccata cttgcttcat
     9661 aaagcgcttg tatgatatca ctatccacaa gagaattcat tttagctaca atcacacctt
     9721 catttttctt gcttgtttca atgcgtatca tttctaaaac tttttctttg atttgatttg
     9781 ggctcattga aagagtttga aggcgacgat ttttactaaa gcccgataag atgtgaaaaa
     9841 agcttgtcgt atctcttgca aattctgctt tgcttgtaaa ataactcaca tcagtataga
     9901 ttttagcact gcttgcatta taatttcctg tgcttaaatg catataaaat ttaagtttat
     9961 ctccttgttt gcgtatgact tgagaaacct tagcgtggac tttaaaacct gtaatgccat
    10021 aaataacatg agctccggca ttttctaaag ctttcgccca atgaagatta ttttcttcat
    10081 caaagcgtgc ttttaattct accatcacag ttacttgttt tccatcgctt gcagcatcaa
    10141 ttaaagcttg aactatattg gaattttttt caactctata aagtgtcatt cttatggaaa
    10201 ttacttcagg atctttgctt gcttctttga taaatttata aactggatca aaactttcaa
    10261 aaggttgtat gatgagtata tcttcttttt ctacagcatc aaaaatagat aaattctcat
    10321 caaaaggtgg taaagtttta ggtgtgtaaa gtgggcttaa aagatgcgta aaggttttat
    10381 ttcctgcgat ttgccaaagg ctagggagat tgagtaaaat agaatattca taaacatctt
    10441 tatgaaaaat tttcatgtga gtattaagaa attctacgat ttgttcatct gcatcttttt
    10501 gaatttgtaa tcttacaaaa gctccttttc tgcgaagttt taagccttgt tctaaaatca
    10561 tcataaaatc atcagcttct tcctcttcta ttaccatatc tgcatttcta gtcactctaa
    10621 atgctgctga agctaagagt ttatagcctg gaaaaatttc ttctgcgtgt tgatggacta
    10681 tactttctat aggaacataa atatttgcac ttacttcata aaaacgaggt aaaactcttg
    10741 gaattctaat cattccaaat tttacaagtt caggatgcgc tttatcgcaa attttaaccg
    10801 ctagtgaaaa agataagttg tttaaatgcg gaaaagggtg agtagcatca acagctattg
    10861 gaacaataac aggaaaaata ttggagaaaa aatactcatc acatttttgt tttaaatttt
    10921 catctaaatt ttcataatgt tttatgaaaa gattttcttt ttctaattca cttgtgattt
    10981 cattaaaata acgctccaaa agctcttttt cttgatgtaa gtatttgcgt atggctttta
    11041 attgttgtaa cggggtcatt tcatcgctac tgcttgcatt aactccagct gaaaaaagtt
    11101 gttttaagcc tgcgacgcgt atcatataaa attcatctaa attggtgcaa tatatagcta
    11161 taaattttaa tttttctaac aaaggtaaat ttttagaaca ttggtctaaa acacgagaat
    11221 taaagcgaag ccaagaaagt tcgcgattga taaacatatc aggacttgtt tgcattaatt
    11281 tttccttttt tagttgtatt ttatcattta ttttgaaatt attgaataaa agttttaaat
    11341 ttttaggtta attaagagta aatatatctt taaaattata ttaaattcat ctatgttaga
    11401 atcacaaaat ttatttctgg gaaattctgt gacattgttg tttcattgaa gattttaaga
    11461 aatgataatt ttaaggagga aaattttgaa gaaaacttcg aatcttttta ctatttttct
    11521 tgttttgctt tttgttttct ttgcggttgg cttttatacc ttttataacg ctaagggcac
    11581 atcttattta agcaatgcaa gtgaatcttg taataactgc catattatga atgaagttta
    11641 taacgaatac atggcagggc cgcactctca aaaagtcaaa ggcgaaccaa gagcaacttg
    11701 cgtggattgc catttgccac ataattttgt agctaagtgg atagctaagg ctcaaagtgg
    11761 tttagggcat gcttatgctt ttacttttaa acttgatgag ttgcctacaa atttgagtgc
    11821 gactgaaaaa agcagaaaaa tggtgcaaga aaactgcata cgctgtcatg cagattttgc
    11881 tcaaacagct atcaatgcta caacaaatcc acatgcagac aagtcattaa attgtgcttc
    11941 ttgtcataaa gatgttggac ataaacacgg aatttaataa ggagaagatg aatgaaaaaa
    12001 aatattttac gcttaggtat tgtcgttttg gttttactta tagcgggagt tttatggcta
    12061 aataatgata tcaatcaaaa aaaagaagat gaagcaaata aaaatgccat tgcagcaaat
    12121 gctgattttt ctttgcttag cgatgatgat ccaaattttg aaaaatgggg taaggttttt
    12181 ccagagcaac taaaaatgta tttaacggtt gaaaaagaag agcctaaggc tactgaattt
    12241 ggtggtaatt tagcttattc aaaattgatt cgctttcctc aattaaccat actttgggca
    12301 ggatatcctt ttagccttga tttcaatgaa gaaagagggc atttttgggt tcaaatagat
    12361 caaatgaaaa cagcaagaaa caacaaagat tttcttaatg cccatggact tgctgctttt
    12421 aaaggtcaac ccgcagcttg tatgaattgt catagtggat ggactccatg gcttataaaa
    12481 aatgttgcta aaggagattt tactgctttt aactctacaa attattggac tatgattaaa
    12541 aatatcccag ctgttgatgg tatagtagaa aattcacctg aacatgcagg cccacatggt
    12601 ggtaaaagaa tgggtgtaac ttgtgcagat tgtcacaatc caaatgatat gagtttaaga
    12661 cttactcgtc cagcagctat taatgcttta gtttctagag gatatgaaaa agatccagta
    12721 caaggcgtaa aagctacaag agaagaaatg agaactttag tttgctctca atgccatgtt
    12781 gaatactatt ttaaaccaac aggggaaaaa gtaaaagtaa tgggtgaaac tattgtagat
    12841 gatagttcta aaaaatggtg gaatggaact cagaaaaatt atgatgagta tgaattttgg
    12901 agagatggca ataaagctaa agagattgaa accgatggta tagttttaac ttttccttgg
    12961 agtgaatgga aaaaaggaca accatttaga attgaaatgc tagatgatta ttatgataaa
    13021 gttcgtggag tatttggagc tgattttact cataaattaa caggagcgca aattattaaa
    13081 attcaacatc cagaaagtga actttatagt ggcggtgtgc atgctgcaaa tggggtaagt
    13141 tgcgtggatt gtcatatgcc ttatgttaga gaaggagcta aaaaggttac tcaacacaat
    13201 atcacttctc ctttaagaga tattaactct gcttgtaagt cttgtcataa acaaagcgaa
    13261 gattatttaa aagctcaagt gcttgacata caaaatagcg ttgcgcatga tcaaagaact
    13321 gcagagtacg caattgttag tttgattatg gatactaaaa aactacgcga tgagctaggt
    13381 aatatggaaa aattccaaag cgatggaaaa gctgatacga aaaaaattag tgaagagcta
    13441 aaagaagttt tagaacttca tcgtaaagct caaatgagag cggattttgt taatgctgaa
    13501 aactcaactg gtttccataa tcctcgcgaa gcttcaagaa tgttattgca agctgttgat
    13561 atggcaagaa tgggacaaac taaacttgta gaaattgcag cggcaaatgg aattaaagat
    13621 tttaaaactt caaatttagg ttttgaagat attcaaaaat ttaatccagg agagctttat
    13681 tataaagtag atgttaataa tcataaagct ggagagcgtt actatgcaga tgaaaaagat
    13741 gttaatggca atcctccaaa agaactttta gagcatgata aagagcttgc tccttataat
    13801 tatcaagtga ttgataaaaa ataattctta agccctataa tcatagggct ttttcttttc
    13861 tttgttttaa aaaatataaa ctttttattt aaaattcact tttgcttcac tttgttttgt
    13921 caaaatatca caaattttga taatcaaaaa ggagttaaaa tgatcaataa aaataaattg
    13981 tttagacagg ttcatatcta tcttagtttg ttctttttgc cttgtgcttt gctttttgct
    14041 ttaacgggta tagcatatat ttttggtatt aatcaagatg tgggcttaaa agttgagcaa
    14101 tatcaattgt caaaagttat agaaagtggt aaagaaagag aagctttaat agagtattta
    14161 aaaacaaatg gtttaaaagt accatctaat acaaatataa ttaaaagcaa agataaaggt
    14221 ataacaatag gtggaactca ttatagtgct aatataactc aaaattctac taatgaatac
    14281 aatattacct taaaaacaag atctttgctt ggagatatga ttatgcttca taaagataag
    14341 ggtgcttggt atttttctgt gcttagcgta ggttttggta ttactttatt tatgctttat
    14401 atttcagggc ttatgattac tttgtttgca aataaaaaag atagaagtaa acaatttgca
    14461 gttcttggag taggggttgt tgtaactttg cttttggctt atcttagcct ttgatttttc
    14521 ctagcttttt aagctaggta ttatttattt ttttgtataa tcacacttta ctttattgga
    14581 cagatgggtg agcggctgaa accacacccc tgctaagggt gcagatctta acgggtctcg
    14641 agggttcaaa tccctctctg tccgccacta aaactttctt gaaaattcca agtatttata
    14701 tatcaacatt atatatttga aaaaaaagaa taatctagaa ctataataaa taaatattat
    14761 tctaaaattg gaaaataatc cattagaaaa taagatattt tggaattatt taagaaatta
    14821 gatgaaaaag aatgctaata tggaagtaag aattctaaaa aaataaaata taaaatcaat
    14881 cccaaagatt acttttatat atgcctaaaa tcacaatttc atttttac
//
LOCUS       DAEDTT010000035        14889 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.035, whole genome shotgun sequence.
ACCESSION   DAEDTT010000035 DAEDTT010000000
VERSION     DAEDTT010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14889)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14889)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14889
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.035"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..366)
                     /locus_tag="KLC54_000773"
     CDS             complement(<1..366)
                     /locus_tag="KLC54_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177162.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFESYTQDLLLEKDLKTTFQTK
                     EFRAVAQLFKTIKTHEKIPH"
     gene            complement(356..718)
                     /gene="dksA"
                     /locus_tag="KLC54_000774"
     CDS             complement(356..718)
                     /gene="dksA"
                     /locus_tag="KLC54_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HBD9177163.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            complement(730..1179)
                     /locus_tag="KLC54_000775"
     CDS             complement(730..1179)
                     /locus_tag="KLC54_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HBD9177164.1"
                     /translation="MQVNIFCIQKSDEFKTWSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            complement(1181..2023)
                     /locus_tag="KLC54_000776"
     CDS             complement(1181..2023)
                     /locus_tag="KLC54_000776"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HBD9177165.1"
                     /translation="MNFADIFSKIRRQQPSIKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTPLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            complement(2032..2754)
                     /locus_tag="KLC54_000777"
     CDS             complement(2032..2754)
                     /locus_tag="KLC54_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HBD9177166.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLYSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQTKSAFVCNLVSQEIFTFSNNQAFKSNLSDPKYLPLTPNLFPKIGIVEKISLHPE
                     LLDFLTKNQLKFRSLGATALSLTYASYFSFVLILGKTRIFDTAAALAIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            complement(2754..4973)
                     /gene="bamA"
                     /locus_tag="KLC54_000778"
     CDS             complement(2754..4973)
                     /gene="bamA"
                     /locus_tag="KLC54_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HBD9177167.1"
                     /translation="MKKHLISICALVAIANAATIKDIKFIGLNHLSNTSAINITGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNRILEIIVTEKPTIAKVTITGIASNDRK
                     QVESILGIKRGTLLDEGSIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDDTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLINPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEVGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            5050..5877
                     /locus_tag="KLC54_000779"
     CDS             5050..5877
                     /locus_tag="KLC54_000779"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HBD9177168.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALRL
                     GLIHELIEFKDLALCDMIFVATPVNAIIEILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            5957..7330
                     /locus_tag="KLC54_000780"
     CDS             5957..7330
                     /locus_tag="KLC54_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HBD9177169.1"
                     /translation="MAKRKGKTYLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHVKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKADDANLDKVYIETNKGKIFKVTPYVKEGYYAALIAWDARDEEFRAFVIATDKA
                     GNISKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEELIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGK
                     KIILGKN"
     gene            7330..8214
                     /locus_tag="KLC54_000781"
     CDS             7330..8214
                     /locus_tag="KLC54_000781"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HBD9177170.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDNRGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            8253..8654
                     /locus_tag="KLC54_000782"
     CDS             8253..8654
                     /locus_tag="KLC54_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HBD9177171.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPAEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            8663..9541
                     /locus_tag="KLC54_000783"
     CDS             8663..9541
                     /locus_tag="KLC54_000783"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HBD9177172.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKMQTKFKD
                     FRVRYLEFDDNGFEIC"
     gene            9566..9823
                     /locus_tag="KLC54_000784"
     CDS             9566..9823
                     /locus_tag="KLC54_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HBD9177173.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEKEDKILQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            9810..12422
                     /gene="infB"
                     /locus_tag="KLC54_000785"
     CDS             9810..12422
                     /gene="infB"
                     /locus_tag="KLC54_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HBD9177174.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKVEKENAKEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVKN
                     SNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDIS
                     LDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPPKK
                     IEKKEVEEVSSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIEI
                     LAAEFGIEINIINEADEFDYVKDYEEEIDEKDLVTRAPVITIMGHVDHGKTSLLDYIR
                     KSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVVA
                     ADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGSY
                     EFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATIIV
                     QNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIAV
                     KTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSLE
                     ALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERAK
                     DKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCMV
                     TEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVGD
                     YIESYKEVQEQASL"
     gene            12419..12781
                     /gene="rbfA"
                     /locus_tag="KLC54_000786"
     CDS             12419..12781
                     /gene="rbfA"
                     /locus_tag="KLC54_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HBD9177175.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            12771..13193
                     /gene="rimP"
                     /locus_tag="KLC54_000787"
     CDS             12771..13193
                     /gene="rimP"
                     /locus_tag="KLC54_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HBD9177176.1"
                     /translation="MNLEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCA
                     RLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNEKEKFE
                     AKIIAVDDENITLENLENKEKTTINFSDIRKAKTFVIW"
     gene            13258..>14889
                     /locus_tag="KLC54_000788"
     CDS             13258..>14889
                     /locus_tag="KLC54_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HBD9177177.1"
                     /translation="MTKIFSENNKKEIQDIFKKMIDLAMKFYNDRNSTFKDDIEDIQN
                     FFESYEWKLYTGLQTLQKDKYKGFALYKEIKEEEYIKFKKGRSAWHGIYIWFGVSRDD
                     IYMRIVAKEEEKCNALLKIQKDNILDYKLEEKIDKFEEIKDRLFDVFLYLSNYINNLS
                     KDDFKIIKDYNMMKNNTPLNQILYGPPGTGKTYHTIDRALEIILKEEKIQIPSEDDRI
                     NRKKLFDEYVKNGQIVFTTFHQSYGYEEFIEGIKPRIDSEENSKEIKYEIKDGIFKEL
                     CEKALENRDSIKNFNFYIDKLKEKAKIDDNNPEKYFELPNTKYSIQYRNGKTFRIKFD
                     DMSKNHKDYPVSIDNIEKLYKTSNIDEIYNSVYVRAILNYLKSQGLEDYKEKDEKTNL
                     PYIIIIDEINRGNVSKIFGELITLIEPSKRIGEKEELKVILPYSKKEFGVPKNVYIIG
                     TMNTADRSITSLDTALRRRFEFIEMMPDVSKLSMDCEGINLQELLKAINTRIEYLLDR
                     EKTIGHAFFIGVENLNDLKSIFQNKIIPLLQEYFYN"
BASE COUNT         5430 a         1929 c         2609 g         4921 t
ORIGIN      
        1 gtgtggaatt ttttcatgtg tttttatggt tttaaaaagt tgcgctacag ctctaaattc
       61 ttttgtttga aaagtggttt taagatcttt ttcaaggagc aaatcttgag tataagattc
      121 aaatttagct gcatctttaa aaaaatgctt aaattttaaa taacgcaaaa atccataaaa
      181 tgctatgtgt aaaacggcta aaatcatata aataaataaa ggaataacaa gccatatcat
      241 aataggtagt tcaaaagtat aagtgctgat atttagagta tagcttccta gttctagatg
      301 ccaagcaaag gcaaaaataa gtgctatata aataaaactt gcaagtaaga agagtttaat
      361 tttcatgttt ttttccttgt tctgcaattt gacggcaagt gatacaatat cttgcgtgag
      421 gtttgacttt tagtctttga gagtcgattt catcatcaca agattcgcaa attccataag
      481 tgccgttttt gattttatct aaagaatctt cgatttctat aagttcttct ttgagattgg
      541 tactgatagc aaagtcaatt tgagagcctg tttctatgac agaaaaatct acactatcac
      601 ttgggacgct attgtgaaga gcttcgattt cattcgaatt gctttgcaaa ttttctaaga
      661 tggctttttt tctttcttct aaaatatttt tgaaattttg tatttcattt tttttcattt
      721 taaaactttc tatttgtgat aagggtgatt gttgttgatg caaaatgcac gataaatttg
      781 ttctaaaagt aaggttttaa caaattgatg tgctaaagta agtttgctta atgatagtct
      841 aaaatccaaa ctttgattaa attcttctct taaaccataa gcaccgccta taaaaaaact
      901 taattcattt ttatcttgga tgagttttgc aaattctata cttgtaagat ctttcccttt
      961 ttcatcaaga gcgatacaat agcctttttt ataaggcata aaagcttctt catagctttt
     1021 ttttgcttct atggcattta aattttgagc taaggctatt tttttattaa aaacatttat
     1081 ttcttttaaa gtggcgtatt tggagatgag tttagagtat ttctcactcc aagttttaaa
     1141 ttcatcactt ttttgaatac aaaagatatt aacttgcaaa ttattttcca ctaaaaaatt
     1201 ttagtacatc gctaagatat tgtttttgtt ctcctctttc aactatagca tctataagtc
     1261 catgttctaa caagaactct gctttttgaa aaccttcagg taaatctgct cctatagttt
     1321 gtttgataac tcttgcacca gcaaaaccta ctaaagcttc aggttcagcg atgattaaat
     1381 ctccaagcca agcaaaagaa gcacttaccc cacccatagt aggatcagtt aaaatactaa
     1441 tataaggaag tttttctttg ctaagaagtt taagtgcggc actagttttg ctcatttgca
     1501 tcaaagaata agtactttct tgcattctag ctccaccact tgcacttacg atgacaagag
     1561 gggttttact tgtgatggct ctttgtatag ctctaacgat tttttctcct tcaacagaac
     1621 ctaaagatcc gcccataaaa gaaaaatcaa atacaacaag ttgggttttt aaaccattga
     1681 tttcacattc tccactgatg acagaacttt ttctacctgt tttactttca ccttcgctaa
     1741 ggcgtttttt ataggatttg ctatcaacaa attttaaagg atctatagct tctaaatttg
     1801 catcatactc aataaaactg ccttcatcac ttaaaagttt aatacgttca tcagctgaaa
     1861 ttctcatgtg ataattacat ttaggacaaa cattaaaaca agattctatt tctttataat
     1921 acatcaaagc atgacaactt tggcatttta cccagtgatt tggagcttct ttaatactag
     1981 gttgttgtct tcttattttt gaaaaaatat ctgcaaaatt catatattca cctaattatt
     2041 ttttaaaaat tccaggatta tatcaaaaat tttcttgtct tggcttagga gaaggaaatt
     2101 ttcatttttt tctatatata aattttgatg aattgctaaa gcagctgctg tatcaaaaat
     2161 tcgtgttttt ccaagaatta atacaaaact aaaatacgaa gcataagtaa gacttaaggc
     2221 tgttgcaccc aaagagcgaa attttaattg attttttgtt aaaaaatcga gaagttctgg
     2281 atgaagtgaa attttttcaa ctatacctat tttaggaaat agattaggtg ttaagggtaa
     2341 gtattttgga tcggaaagat tggatttaaa agcttgattg ttactaaaag taaaaatttc
     2401 ttgactaaca agattgcaaa caaaagcgct ttttgtctga tctttttcca tgagagctat
     2461 agaagttcca taaaatggta ttttagaaac aaaatttgaa cttccatcca aaggatcaag
     2521 aatcatttgt tttgggctag cttttccgat caatccgctt tcttcagaaa aaatttgtcc
     2581 aaaacaacta agatatttta tgaaaatttg ttcacatttt aagtcaagct catagccttg
     2641 atttttatca tagcctaatt tagagtaaag tttaagatca ttttgtggga tattgtttag
     2701 atacttgcgt atttgcaaat ttgcattcaa gcaagcatct aaaaattctt tcattaaaag
     2761 cgtgttccaa gattaaattc aaaactatta gtatcatcac cttttttatc attaagaggt
     2821 ttggcaaata caagctgtaa aggcccaatt ggtgtaatcc attcaatgcc tatacctgta
     2881 ctcattcttt ttatttcatc taaattttta cgccctatca taccataatc aaaaaacacg
     2941 ctaccacgaa gtttgattct atcaatcaaa gggaagctaa gttctacgga attggcaaaa
     3001 gctatggttc cacctacttc atctccccat tggtttttag gacttaccgt tctgctttca
     3061 aaaccgcgta tcgatctaat accacctaaa taaattcttt gattaattgg caaatagcct
     3121 tcatcccata ctttataaaa actcgcttta tagcgataaa taagatcata tcctatatag
     3181 tcttgcaaac cttgataaaa gttaaattta gagcttgatg aaataaattc ttgatctccg
     3241 ccaagtccag cgtattctaa actagttgaa gcaatgatac ctgatcgtgg cagataataa
     3301 tcatctgtat tgttaaaggt gattgctgga gttatagagc ttttaatact tttgccaagt
     3361 tcatatcctg ttcttaaaag agttggactt aagtgatata tatcgctttg ttcaagatta
     3421 taagttaagc ttacattata gtatcttgca aattggcgtc caactgttat atcaaagccg
     3481 taattttttt ctgaataatt atcccattca tagtcatttg aataaagtgt tccacccaga
     3541 ctatattgac tatcaagaac gcgtggattt atgagactaa tccttcctga taaggtatca
     3601 tcgcttttat ctacgcttac agagcttttt attcctgaac caaagatatt tgtatctgat
     3661 aaagaagcat taagtaaaat accatcgctt gatccatagc caatacctcc agaaatagct
     3721 cctgtagaag cttctttaac atcaacaatc aaatcaatat gtgtatcatc aactttttct
     3781 tctttaatat ttacatcgtc aaaataagaa gttcttttta aagcattttt tgactcgctt
     3841 aagtctgttc tattgtataa attaccttct gttatatata attctcggcg tatgacgcga
     3901 tctacagtac gtgaatttcc tgaaataata acatttctta tataaacttt atcatgaggg
     3961 attactttaa atacaacggt ggcttcttga gtttgatcat ttttttgaat atcaggatag
     4021 acttctacaa acgcatagcc taaatcagca ctttgtgttt ctatggtttt aacatctttt
     4081 ctaatgtctt cgatattgat agttttgcca gcacttgatc ttaaatcttt tacggtttgt
     4141 gcattttgtt tatcatcaaa taaaggattt tctatgctta tacttttaat tttataaggc
     4201 tttccttctt tgataaaata agtcaaattt gcttgataag tatctgtgta ggttttaaga
     4261 taaggcgagg atacttgaac atctaaatat ccttttttca tatattcatc agcaattctt
     4321 gaactatcgt tactaagttc aaaaactttt aattttccat cattgcgtcc ccacatccat
     4381 cccataaatt ctttttcttt gttaacaaca gcaggttcta tatcagaata tgaaaatttc
     4441 ttggctccac ttaaatgaac attatcaata atgatatttt cgccacgatt tactataaat
     4501 tcaagctcta gtccatcggt attttctaaa gtcttttttt tgtattctac aatagtatca
     4561 aaataacttt ttgcttcata ataagcttta atgcgttcaa tagcttcttt tatacttcct
     4621 tcatcaagta gtgtgcctct tttaatccct aaaatacttt caacttgttt tctatcattt
     4681 gaagctatac ctgtgatagt aacctttgct atagttggtt tttcggtaac tataatttcc
     4741 aaaattctat tgttgttttc tactgcaata ttttcgaaat aattttgttt ataaagatta
     4801 agaatagcag tgttgatttt tgcaggattt atttcctcgc ctattttaag ccccgtgata
     4861 tttatagcgc ttgtgttcga taaatgattt aatccgataa atttaatatc tttaatggtt
     4921 gctgcattgg ctatagcaac taaagcacaa atactaataa gatgtttttt cattgatttt
     4981 ttacctaaag ctttattaaa agctgtataa tagcaaaaaa aatttaacaa aaaaactaag
     5041 gtagaaagta tgaaaatagc aattataggg cttgggctta tgggtggatc tttagggctt
     5101 tgtttgaaag aaaataagct tatttcttgt gtttatggta tggatttaag taaagaaaat
     5161 gaaaaagatg ccctgcgatt aggtcttatt catgagctta tagaatttaa agatttagct
     5221 ttatgtgata tgatttttgt cgcaactcct gttaatgcta ttatagaaat tttgcaaaag
     5281 ttagttgatt tgccttctaa tgtaacaatt atagagcttg gaagtacaaa aagaaaaatt
     5341 atagaaagtt tgcctaagaa tttaatcaaa caaactcttt ttgctcatcc tatgacagga
     5401 actgaaaatt caggtccaaa agcagctttt aaagagcttt ataaagatgc agtttgtgtt
     5461 ctttgcgata gtgaaatagc tgatgatttg catcaaaaaa gagcggtaga aattttttct
     5521 catttaggga tgaaaattgt ttttatggat agtaaagccc atgatcatca tgctgctatc
     5581 atttcacatt tgcctcatgt tataagtttt tctttggcaa attttgtaat gaaagaagaa
     5641 gataaaagaa atattgttca tttagctgga ggatctttta aaggtatgag cagaattgcc
     5701 aaatcatcgc cacaaatgtg ggaaagtatt tttttacaaa ataaagataa cttattaagt
     5761 tctattgatt tttttcaaca agaattagag agatgtaaac aaatgataca attagacaaa
     5821 aatgatgaat taagagaatg gatgaaacag gctaatactc taagagaaat tttataaatt
     5881 tgctagatat ttactgaaaa tataatagaa tttatactaa aaacaacaaa aacattgaaa
     5941 atttttaagg aaggttatgg caaaaagaaa aggcaaaact tatttatctg ttttaatttt
     6001 agttttaata gcaattttga ttttttttat ttcaagatta agtatttttg aaaaaaatcc
     6061 tcctcaaatt ttaatgccag atgttgtata tactgatctt aaaaaaccta ttttagtgca
     6121 tgttaaagat gatgaaagtt ctatcaaaaa tgtacaaatt atattgcata aagacgacaa
     6181 tactagtgca atggttatag cagatgaaaa gatttctaat ttaaaagata ttaccttaca
     6241 agttgctttg ccaaaatttg gttacaaaga aaatgtaaaa tcttttgttt tggaggtgat
     6301 agctaaagat tctagttttt ggaatttttt tagtggcaat gaagcaagaa aacaaattgc
     6361 ggtattagta gataatacgg ctccaaaaat caatatcata agcaattctt accaaatcga
     6421 gcaaggcggt gctggggcag ttgtttttaa ggccgatgat gctaatttag ataaggtgta
     6481 tatagaaaca aataaaggta aaatctttaa agttacacct tatgtaaaag aagggtatta
     6541 tgcggctttg attgcttggg atgcaaggga tgaggaattt cgcgcatttg ttatcgctac
     6601 ggataaagcg ggaaatattt caaaagaacg tataaggtat tattttgtta atcgtaaata
     6661 tcgtgtttca aatattaatt taacggataa atttttagat ggaaagattg agaatttagc
     6721 taatcaatac gctccaaaag ataataatct caatcgttat gaaaaattta agtttgtcaa
     6781 tgaaacttta agaaatagca atgaagaact tatccatgaa atcacttcaa aagtacctga
     6841 ggaaaaaatt gataattttg atttgaattt atttttacct cttaaaaatg gtatgaaagt
     6901 agcggatttt gctgatcata ggtattattc ttataatggg caatttgtga gtgattctta
     6961 tcatatgggg cttgatctag caagcgtagc acaagctcct atcataagta ataacgcagg
     7021 caaggttgtt tttgctgctg aaaatggaat ttatggttta aatttaattg tttatcatgg
     7081 ttttggagta tatagtcttt atgggcactg ttcttctaaa aatgttgatt tagatgaaat
     7141 gattaataaa caaagcatta taggcaaaac aggaacaagt ggtttagcct taggtgatca
     7201 tttgcatttt ggagttttgg ttcaaggagt tgaaacgcgt cctgaacaat ggcaagataa
     7261 aaaatggata gaaaataata tttacaatgt tttaaatgat ggtaaaaaga taattttagg
     7321 aaaaaattaa tgaaacaatt aactttagca aaaactgtca aaggcgtagg tataggactt
     7381 cataagggtg aacctataga aattacttta gagcctttag aagcaaatag tggtatagta
     7441 ttttttagaa gcgatcttaa tgcaagctat aaggcaagtc ctgaaaatgt gatcaatact
     7501 caaatggcaa ctgttttagg agataatcgt ggatttattt ctacaataga gcatttaatg
     7561 agtgcgatta atgcttatgg aatcgataat gtacgcatag ttttaaatgc aaatgaagct
     7621 cctgttatgg atggatcaag tattagtttt tgtatgatgc ttgatgaagc aggggtaaaa
     7681 gaacttgatg cgcctaaaaa aattatggta attaaaaagc ctatagaagt aagagatggt
     7741 aataaatttg tgcgtttaac tcctactaaa gaaccccgta ttaattacac aattaaattt
     7801 gacaatgctg ttataggtga acaaagttac aattttgaat tcagcaaaaa aaattatata
     7861 gaaaacatag caagggctag aacttttggt tttttaaaag atgttcaagc tcttaggagt
     7921 atgaatttag cactaggtgg aagtttagaa aatactatag tggtagatga aaatcgtatt
     7981 ttaaatcctg aaggtttgcg tttcaaagat gagtttgtaa gacataaaat tttagatgca
     8041 attggagatt taaccttgct tggatatcgt gtttttgggg attatacttc atatgctggg
     8101 agtcatcatt taaatcattt acttactaaa gaagttttaa aagataaaga tgcttatgaa
     8161 attgtaagcc ttgaaaaaac aacccaaaaa gcttatgaaa aggtatttgc ataaaaacct
     8221 ctcttttgct taatgcttta tctaagcctt tgatgatcgg aatttatcaa gatgataaac
     8281 ttataaaaac ttataaaagt gaagaaaaag caagcgaatt tttaccaaaa attttagatg
     8341 aattgcttaa agaatatgat tttacaagtt taatctatgc taatggtcca ggttcttata
     8401 tggggattaa aatttcttat gtaagtttga gtactttaag tatagtaaaa aatattcctt
     8461 tatttgcggt gagtgctttt gaattaaatg gctataaacc cataagtgca aataaaaatt
     8521 tttgttttgt atataaggaa ggtgaaattt gtttagagca aaatatccca gcagagtttt
     8581 ttttaccaaa aaatttacaa gagcttaaac taaataatga taatcttccc ttttattttt
     8641 tagatgcaat ttaggatgaa atttgaaaat tttagttccc gctacgagtg cgaatttagg
     8701 gccaggtttt gattgtttag gacttagttt aaagcttttt aatgaaactc aaatccaaaa
     8761 atcaggtgtt tttagcatta gtattggagg tgagggcagt gataatattt ttcttaaaaa
     8821 aaacaatata tttgtaaata ttttttatga aatttatgaa aaactaagcg gaaaaaaaga
     8881 taattttcgc tttatttttc aaaataacat tcctctttca agagggttag gaagctcttc
     8941 agctgtgatt gttggagcta ttgccagtgc ttattatatg agtggattta aggtagaaaa
     9001 agaacgtatt ttagatgaag ctttaattta tgaaaaccat ccagataata tcgctccagc
     9061 tactcttggt ggttttgtgt gttctttggt tgaaaaaaat aaagtttata gcatcaaaaa
     9121 agagattgat aaagatttag ctgctgtggt tgtgatccca aatttggcaa tgagcacgga
     9181 acaatcacgc caagctttgg ctaaaaattt aagttttaat gatgcggttt tcaacctttc
     9241 tcatgcttca tttttaaccg cttgtttttt ggagaaaaaa tatgaatttt taaaatttgc
     9301 aagtcaagat aagcttcatg aaatcaatcg tatgaaaaac ttacctgagc tttttgaagt
     9361 acaaaaattt gctttagaaa ataaagcttt aatgagcaca ctttcaggtt cgggatcgag
     9421 ctttttttct ttagctttca aagatgatgc tttagctttg gcaaagaaaa tgcaaacaaa
     9481 atttaaagat tttcgtgtgc gatatttaga atttgatgat aatggctttg aaatttgcta
     9541 aaaaatataa aaaaaagata taattttgaa aaaacatata ccaattagaa tgtgcatagt
     9601 gtgtaaaaac cgctttgagc aaaatatgtt atttagattt aaagttgttt taggagatat
     9661 tgtgcctaaa gcagaacatg gaagaagcgg gtatttatgt caaaattgta ttgaaaaaga
     9721 agataaaatc ttgcaaaaag cattttctaa aatatgtaaa aatttaaata ctaaaattac
     9781 tcagcaagga cttaaggaga tatttttaaa tggcaaagat tagaattcat gaaatcgcaa
     9841 aagaattagg ttatgatagt aaggaaatta ttgaaaaggc aaatgaatta gggcttggaa
     9901 ttaaaacagc atcaaatgct gtagaacctg agattgcggc agctatttat gagtatatac
     9961 aaacaagaga aattccagaa gcttttaaga aaaatatcaa aactcctacg gcaaaaaagc
    10021 ctaaaaaaga aaatataaaa gaacaagaaa agctaaatga atctgaaaaa aaagaaccta
    10081 aaaaagaaga aaagcttaaa caagaagtta aaaaagaaga attaaaagtt gaaaaagaaa
    10141 atgcaaaaga agaaaaacaa gaaattattg atgctcataa gccacaaagc cttgctagtg
    10201 caactttagc caaaagacgc ggacttgtta ttgttaaaaa gaaaaaagac gaagaagaaa
    10261 ttcaagttaa aaaagaagaa gtaaaaaatt caaatgatat atctatcaat aatgaagagc
    10321 gcttaagttt aaaaaccatg ttttcaaatg ctgatgagag tttaaagaaa aagaaaaaag
    10381 aaaaaaaatc ttttgtcgcg agtaaaaaag aaagtaccga aaaaatgaat tttttagatg
    10441 aacatgattt tggtgatatt tctttagatg atgaagatga ggtagtgttg cctgatttta
    10501 gtgtaaaaga acaagaaaaa ccacaaaata tcaataaaaa acaacctaat tttataagac
    10561 aagctgttgg aaattctgcg ggttttggac ttgaaggtgg aattcaaaga agaagtcgta
    10621 aaaaaccacc taaaaagatt gaaaaaaagg aagtagaaga agtaagtagc gttgctattt
    10681 ctaaagaaat tcgtgtgtat gaattcgctg ataagatagg aaaaagcact agtgaagtga
    10741 tttcaaaact tttcatgctt ggaatgatga caacaaaaaa tgatttctta gatgaagatg
    10801 cgattgaaat tttggctgct gaatttggta tagagatcaa tatcattaac gaggctgatg
    10861 agtttgatta tgtaaaagac tatgaagaag agattgatga aaaagattta gtgactagag
    10921 cacctgtgat tactatcatg gggcatgttg atcatggtaa aacttctttg ctagattata
    10981 tcagaaaatc acgcgttgca agtggtgaag cagggggtat tactcagcac gtgggtgctt
    11041 atatggtaga aaaaaatggg cgtaaaatta cttttatcga tactccaggt cacgaagctt
    11101 ttactgctat gcgtgcaagg ggtgcaagta tcactgatat tgtaatcatc gttgtggccg
    11161 cagatgatgg ggtaaaacca caaactaaag aagcgataaa tcatgctaaa gcagcaggtg
    11221 tgcctattat tattgctatt aacaaaatgg ataaagaagc agcaaatcct gatatggtaa
    11281 aaactcaact cgcagaaatg gaaatcatgc cagtagaatg gggcggatct tatgaatttg
    11341 taggggtttc ggctaaaaca ggaatgggga ttgaagattt gcttgagatc gtgcttttac
    11401 aagctgatat tttagaactt aaagccaatc caaaaagttt tgctaaagca agcattatag
    11461 aaagttctgt gcaaaaaggg cgtggtgcgg tagctactat catcgtgcaa aatggaacac
    11521 ttactgtagg aagtactgtg gttgcaggtg aggcttatgg gaaagtgcgt gcgatgagtg
    11581 atgatcaagg taaagcttta aaggaaatca aaccaggcga atgtggggtt atcgtaggac
    11641 ttagtgaagt agcagatgca ggtgaaattt taatcgcagt aaaaaccgat aaagaagcaa
    11701 gagaatacgc taataaacgc cacgaataca atcgccaaaa agaacttagc aaatctacta
    11761 aagttagcat tgatgagctt ggagctaaga tcaaagaagg caatctaaaa gccttgcctg
    11821 ttattttaaa agctgatgta caaggatctt tagaagcctt aaaagcaagt ttagaaaaac
    11881 ttagaaatga tgaaatcaaa gtgaatatca ttcatagtgg ggtaggaggg atcacacaaa
    11941 gtgatataga gcttgcaagt gcgagtgaaa actctatagt actaggtttt aacatacgcc
    12001 caacagggga agttaaagag cgtgctaaag ataaaggcgt agaaattaaa acctataatg
    12061 tgatttataa tcttttagat gatgtaaaag ccttgcttgg tggtatgatg agtccgatta
    12121 tttctgaaga gcaattagga caagcagaga ttagacaagt gatcaatgtg ccaaaaatcg
    12181 gacaaatcgc aggttgtatg gtaactgaag gggtgattaa ccgtggagcc aaaattcgcc
    12241 ttatccgtga tggagttgtg gtttatgaag gcaatgtaag ttcgcttaaa cgctttaaag
    12301 atgatgctaa agaagtggca aaaggctatg aatgtggcgt aggtatagaa gggtgcgatg
    12361 atatgagagt gggtgattat atagaaagct ataaagaagt acaggaacaa gcaagtctat
    12421 gaatccaagt gagattaaaa aactacgcac tgaaagtatc ttaaaagagc tgatccctga
    12481 agctttagca aatttagatg atgaaaattt gaaaaatttg tgtgtagtgg atgtagagtg
    12541 taaaaaaggc agatacgatg cttttgtgta tcttgataaa atgtttttta atgttcatga
    12601 gcaagaaaaa attttatctt ctttaaaaaa ggcaagtaga gctttgcaaa attactgcat
    12661 gagtgagcag ggctggtata ggtgtccgaa ttttcacttt aaatttgatg atagacttga
    12721 gtatcaaaac cacatggacg cactttttga aaaaataaaa aaggataaaa atgaatcttg
    12781 aagccctttg caaagaagca ggacttagtt tttatgatga tgagctagta agtgaaaatg
    12841 gcagaaaaat ttatagaatt tatgtgcaaa aagaaggcgg ggtaaatctt gatgattgtg
    12901 caagacttag tgaaatttta tcgcctattt ttgacgtaga gccacctgta aatggggagt
    12961 attttttaga agtatcttca ccaggacttg aaagaaaact gagtaagata gaacactttg
    13021 ctaaaagtat aggtgaactt gtgaagatca caaccaatga aaaagaaaaa ttcgaagcaa
    13081 aaatcattgc tgtagatgat gaaaatatca ctttagaaaa tttagaaaat aaagaaaaaa
    13141 ctactataaa ttttagcgat ataagaaaag ctaaaacttt tgttatatgg taaatttaag
    13201 ttaaatatta atataattta attatttttt ataaaaaaca aaaatcaagg atgttaaatg
    13261 acaaaaatat tttctgaaaa taacaagaaa gaaatccaag atatttttaa aaaaatgatt
    13321 gatttggcaa tgaaatttta caatgatcgc aattctactt tcaaggacga catagaagat
    13381 attcaaaatt tttttgaaag ctatgagtgg aaattatata ccggattgca aacactccaa
    13441 aaggataaat ataaagggtt tgcattatat aaagaaatta aagaagaaga gtatataaag
    13501 tttaaaaaag gtagatctgc ttggcatggt atttatatat ggtttggagt gtcaagggat
    13561 gatatttata tgcgtatagt tgccaaagaa gaagagaagt gtaatgcatt gcttaaaata
    13621 caaaaagaca atatactcga ttataaatta gaagaaaaga ttgataaatt tgaagaaata
    13681 aaggataggt tatttgatgt atttttatac ttatcaaact atataaataa tttatctaaa
    13741 gatgatttta aaattataaa ggactataat atgatgaaga acaatacgcc tttaaatcaa
    13801 attctttatg gacctccagg gacaggaaaa acttatcata ctatagatag ggctttggag
    13861 attatattaa aagaagaaaa aatacaaatt ccaagcgaag atgatagaat aaatagaaaa
    13921 aaattgtttg atgagtatgt aaaaaacggg caaatagttt ttactacctt tcatcaaagt
    13981 tatggatatg aagaatttat agaaggtata aagcctcgca tagatagtga agaaaattct
    14041 aaagaaataa aatatgaaat aaaagatgga atttttaaag aactttgcga aaaagcttta
    14101 gaaaataggg atagtataaa aaattttaat ttttatatag ataaattaaa agaaaaagca
    14161 aaaatagatg ataataatcc agaaaaatat tttgaattac caaatactaa atattctatt
    14221 caatatagaa atggaaaaac atttagaatt aaatttgatg atatgagtaa aaatcataaa
    14281 gattatccag tcagtataga taatatagaa aaattatata aaacttctaa tatagatgaa
    14341 atatataatt cagtatatgt tagagctata ttaaattatt taaaatcgca gggtttagaa
    14401 gattacaaag aaaaagatga aaaaacaaat ttaccttata taatcatcat agatgaaatc
    14461 aatcgtggta atgtaagtaa gatttttggt gagcttataa ccttgataga gcctagcaaa
    14521 aggataggtg aaaaagaaga gttaaaagta attttgcctt atagtaaaaa agaatttgga
    14581 gtgcctaaga atgtttatat cataggcact atgaatacag ccgatagaag cataacttct
    14641 cttgatacag ctttgcgaag aagatttgaa tttattgaga tgatgcctga tgtgagcaaa
    14701 ttatctatgg attgcgaagg tattaattta caagaattat taaaagctat aaacactcgt
    14761 atagaatatt tactagatag agaaaaaacc ataggacacg cattttttat aggtgttgaa
    14821 aatttaaatg atttaaaaag tatttttcaa aacaaaatta tcccgctttt gcaagagtat
    14881 ttttataat
//
LOCUS       DAEDTT010000036        14826 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.036, whole genome shotgun sequence.
ACCESSION   DAEDTT010000036 DAEDTT010000000
VERSION     DAEDTT010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14826
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.036"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            3..743
                     /locus_tag="KLC54_000789"
     CDS             3..743
                     /locus_tag="KLC54_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HBD9177178.1"
                     /translation="MKFHSFQNFYEDFKSHKFIFNHEHQSIFKKNTSQQITLLHPTRI
                     RRPKFVNSTHALAKIIHSVAHIEFNAINLALDASYRFKNLPLQFYYDWLEVADEEIKH
                     FKLLNSALEELGYKYGDFPVHDNLESALEATKDSLSFRMGIVHRGLEAKGLDANPFVV
                     QKLQSSNHSIKNLLMEYLEIILNDEIKHVKKGDTWWKFANQNKYDFIELCKTFKQFSL
                     AGKKLNIQARIKAGFTQEECEVIEKFYS"
     gene            complement(734..1462)
                     /gene="pssA"
                     /locus_tag="KLC54_000790"
     CDS             complement(734..1462)
                     /gene="pssA"
                     /locus_tag="KLC54_000790"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HBD9177179.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKIRNQE"
     gene            complement(1472..2089)
                     /locus_tag="KLC54_000791"
     CDS             complement(1472..2089)
                     /locus_tag="KLC54_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HBD9177180.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            complement(2086..4023)
                     /gene="ftsH"
                     /locus_tag="KLC54_000792"
     CDS             complement(2086..4023)
                     /gene="ftsH"
                     /locus_tag="KLC54_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HBD9177181.1"
                     /translation="MNNNTPNNKGNPQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NSLPTRLQELEEVKTEVKVEE"
     gene            complement(4027..4872)
                     /locus_tag="KLC54_000793"
     CDS             complement(4027..4872)
                     /locus_tag="KLC54_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HBD9177182.1"
                     /translation="MQKKYYELFFIVEERYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEELSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNFINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            complement(4895..5287)
                     /locus_tag="KLC54_000794"
     CDS             complement(4895..5287)
                     /locus_tag="KLC54_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HBD9177183.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            complement(5400..6293)
                     /locus_tag="KLC54_000795"
     CDS             complement(5400..6293)
                     /locus_tag="KLC54_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HBD9177184.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLKRCVL
                     SDPYPSVLNNELCVTASIPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     LVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            complement(6293..8065)
                     /gene="pglF"
                     /locus_tag="KLC54_000796"
     CDS             complement(6293..8065)
                     /gene="pglF"
                     /locus_tag="KLC54_000796"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HBD9177185.1"
                     /translation="MIFYKSKRLAFFLTSDIVLILLSVYLAFSLRFSGDIPSIFYHGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSKMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFVVEEKEKIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     SLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGKPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGI"
     gene            complement(8067..9227)
                     /gene="pglE"
                     /locus_tag="KLC54_000797"
     CDS             complement(8067..9227)
                     /gene="pglE"
                     /locus_tag="KLC54_000797"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HBD9177186.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKDY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEYFSFLDELENS
                     RSNRWLSTALIDFDKNELNACQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHTQEVFKGTKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA"
     gene            complement(9325..9915)
                     /gene="pglD"
                     /locus_tag="KLC54_000798"
     CDS             complement(9325..9915)
                     /gene="pglD"
                     /locus_tag="KLC54_000798"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HBD9177187.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFEN
                     TLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSASVEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKSQNEKGVFVGVPAKRKI"
     gene            complement(9902..10504)
                     /gene="pglC"
                     /locus_tag="KLC54_000799"
     CDS             complement(9902..10504)
                     /gene="pglC"
                     /locus_tag="KLC54_000799"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HBD9177188.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLSLYNEEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            complement(10497..11627)
                     /gene="pglA"
                     /locus_tag="KLC54_000800"
     CDS             complement(10497..11627)
                     /gene="pglA"
                     /locus_tag="KLC54_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HBD9177189.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDLIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINNLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKENKICVIKSVGINLKKFFPIYIESEKKELFWRNLNIDKKPIVLMIARALWHKGV
                     KEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGVVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENNIAQRYLKLYDRVIKNV"
     gene            complement(11637..13778)
                     /gene="pglB"
                     /locus_tag="KLC54_000801"
     CDS             complement(11637..13778)
                     /gene="pglB"
                     /locus_tag="KLC54_000801"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HBD9177190.1"
                     /translation="MLKKEYLKNPYLVLFAMIILAYVFSVFCRFYWVWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSALTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPTILLANEYKRPLMGFVAALLASIANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSAIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDLSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAIMVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFALSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKTDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            complement(13782..>14826)
                     /gene="pglJ"
                     /locus_tag="KLC54_000802"
     CDS             complement(13782..>14826)
                     /gene="pglJ"
                     /locus_tag="KLC54_000802"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HBD9177191.1"
                     /translation="VVATLLPILSLKFEVHLILMNDKISYEIPECQIHFLECSKPSEN
                     PILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALMARMFGNKTRLVINECTTP
                     SVMYAKNNFNSLANKFLISLLYPKADLILPNSKGNLEDLVQNFSINPKKCEILYNAID
                     LENIEQKALEDVALKDKFILSVGRLDKGKNHALLIRAYARLKTDLKLVILGEGVLKDE
                     LLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFEGFSNVLIESLACSCAVVC
                     TDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDKLRKAYKNKAKTRAKAFDK
                     VKIARDALKYLLG"
BASE COUNT         5301 a         2851 c         1686 g         4988 t
ORIGIN      
        1 ctataaaatt tcactctttt caaaattttt atgaagactt taaaagccac aaatttattt
       61 ttaatcacga gcatcaaagc attttcaaaa aaaatacatc gcaacaaatt accttgcttc
      121 atcctacacg tataagaagg cctaaatttg tcaattcaac tcatgcgctt gctaaaataa
      181 ttcattcagt cgctcatata gaatttaatg caattaacct ggctttagat gcgagttatc
      241 gctttaaaaa tctacctttg caattttatt acgattggct ggaggtggca gatgaggaaa
      301 ttaaacattt caaactttta aattcagcac ttgaagaact tggttacaaa tatggagatt
      361 ttccagtgca tgataattta gaatctgctc tagaagctac aaaagactct ttaagcttta
      421 gaatgggaat agttcataga ggtttagaag ctaaagggct tgatgccaac ccctttgttg
      481 ttcaaaaact tcaaagctcc aatcattcca ttaaaaatct tttaatggaa tatcttgaaa
      541 ttatacttaa tgatgaaata aaacacgtta aaaaaggaga tacttggtgg aaatttgcaa
      601 atcaaaacaa gtatgatttt atcgagcttt gtaaaacgtt taaacaattc tctcttgcag
      661 gaaaaaaact taacattcaa gcaagaatca aagctggctt cactcaagaa gaatgcgaag
      721 tcattgaaaa attttactct tgatttctta tcttaaattt tgaaacaata atggtatata
      781 aaacccgaat aattccataa agcacataca agcttgctaa aattaccaaa ctttcaagag
      841 gataaagata taaaaatgaa aatattataa ttaaaataat caaaactttt aaaacactag
      901 aacgattaaa atcaagcttt ttaaagctag gatagcgtat attacttacc attaaaagcc
      961 ctaaaattgc ttgaagcacc aaaaaaacta caccataagg ctttaaaaaa tcataactaa
     1021 taaacgcata agtccatata gcactcacaa ctgctgcagt aggtatagga agacctataa
     1081 aaacagaagg ttcataagtg cctgtggtaa cattaaatct cgccaaacga atagctccaa
     1141 aaaccacaaa aaaagccgta atcaaagatc caagttttcc aaaatcataa cctatagcca
     1201 tataaaaaag aaccgctgga gcaactccaa aagctactag atcagctaaa gaatcaaatt
     1261 ctactccaaa ttttgaagta gaatttgtaa gtcttgcaac acggccatca agcccatcgc
     1321 aaatcaaaga taaaataata taaatcaaag ctgtataata atttccatgt attgaagcta
     1381 taatagaaat aacccctaaa aaagctgaag cagctgtaaa aagattgggt aaaatataaa
     1441 ttaattgcgg tctgttattc attatttttc cttacgcaaa atagcctagc aatgagcctg
     1501 ctttaatttc atcatttaag cctatatgaa ttctagtatc ttttggtaaa agtaaactta
     1561 tagagccatt gattaaaaaa cccattctat ctcctgcttt taaatcatga gaaatattat
     1621 caagctttaa ttttctatca aaagaacctg catagattcg caaggctatc gttttattct
     1681 ctttaacttt tgccaaaata aaagctcttt cattcatcat ttttgcagat tttaattcac
     1741 tgcacaaaaa aagcccatgt cgtaaacgaa tatctattat agacattgca aaaggtgtat
     1801 taaaattccc agcatcataa agagcgtttt taatagtaat ttcaacacat tcacccaaat
     1861 ctttatgatg aatattttct attttagtaa ccctaccatc cataggtgca aaaatagctt
     1921 tttcatcact acaaacaagt tctcttttgg gcgctctaaa aagaaaaata caaattacaa
     1981 ttaatgctaa tagcaagatg gaaaaagaat aaaaaatcca cacaaaaata aaaattaagc
     2041 ttaaaataat aagacttaaa tatccatctt ttgcaataaa atctttcatt cttctacttt
     2101 aacttcagtt ttaacttctt cgagttcttg taaacgagtt ggtagactat tttgatcctc
     2161 aaactcttta ataatctcac gcactttatt accttcaata gtttcttctt cataaagggc
     2221 tgcaaccata gtctcaatcg ctcccttata agtatttaaa gtatctttaa catctttata
     2281 gcgttcatct aaggttttct ttacataatc atctaaagat tctgccatct tttcagaata
     2341 gtcttttata gtttgcccac cacttaagaa agtatttctt tgtttttcaa gcaccataag
     2401 tcctgcaatt tcactcatac catacataga aatcatagct tttatgatat cggttgctct
     2461 ttctaaatca ttacttgcac ccgttgaaat ttcacctata aacacttctt cagctgcacg
     2521 accacccaaa agtacatcta cttcagcgat aagttcatgt ttttgcatta aaaatttatt
     2581 ttcctcagga gtatttaaag tataacctaa agccgcaaga ccacgcggaa tcacagaaac
     2641 cttacttaca cgttttgcgc ctttggttgt ttcagcaatc aaggcatgac cacattcatg
     2701 ataagtaaca attttctttt ctttttcatt aatacgacgt gatttcttct caagtcctgc
     2761 tatagctctt tcgacagctt caactaaatc attttgttct acatattttt tagaatccct
     2821 acccgctaaa agcgctgctt cattaataat atttgcaaga tcagctcctg caagccctgc
     2881 agttaagcgt gctatatctt ctactttaac ttttggggat attttgacat ctttcatgtg
     2941 cacttttaaa atatcacacc tacctttaaa atcaggttta tcaactaaaa cttgtctatc
     3001 aaaccttcct ggtcttaaaa gcgctgcatc taaaacttct gggcgatttg ttgctgctaa
     3061 aacaatgact ggggaacttt ctgtcccaaa gccatccatt tcagccaaaa gctgatttaa
     3121 agtttgctct ctttcatcgt ttccacccat catgccactt gctgcacgac ttttaccaat
     3181 agcatctatt tcatctataa aaacaatagc aggagcttct ttttttgcat tttcaaacaa
     3241 atctctcaca cgagaagcac ctacacccac aaacatttct ataaaagatg aacctgaaac
     3301 actaaaaaac ggcacatcag cttcacctgc aactgctttt gcaagcaaag tttttcctgt
     3361 acctggaggt ccaacaagta aaagcccttt tggaatttta gctcccaatt taatatatct
     3421 ttcaggatac tttaaaaaat ctacaatttc ttttacttct tctttagctt cttcaacacc
     3481 agctacatcg ctaaatttta ctttaggttt ttctgaattt acaagcttct tagaacttcc
     3541 tatacccaat atagaacttc ccatattttt ttgcatacga cttgccaaaa acatccaaat
     3601 accaaagaaa ataaatactg gcaaaaccca tgaaaaaagt atatccgtaa accaatttgt
     3661 ttcagaatac gcaccataag cgatattttt actatctagt aaactcacaa gctcaggatc
     3721 attaactttt tttgctgtat aaacagtatt gtgagagctt gaaatcgctt tgattgttgt
     3781 ttgtcctatg ctaacttgat tgatttgtcc actttcaata agctttttta actcagaata
     3841 agggacattt ttatttactt cattgccatt caatgccccg ccaaaagaac cattgccatc
     3901 aaaaaatccc ttaaaaataa ttatcattac aattgcaaaa atcgcaaaaa taaaaatggg
     3961 atttttgtta aaaaaattat taccctgcgg attaccctta ttatttgggg tattattatt
     4021 cattacttat ccttttttat tatttttata tacaaaacta caccactcat tgatttgcat
     4081 ttcatcaatg agttccaaat cttgaaattt ttctttaatt cttgttgaat atttatctaa
     4141 aattcctgac aaaataagta tagcattatc ttctaaatgg tttttaatat ctttttctaa
     4201 aattaaaatc acatctgcaa tgatatttgc aacaattaga ttatataaac catttgcttt
     4261 atctatagat ccacaccaag ccttgtgaaa atcaacacca tttaatcttg cattttctaa
     4321 agaactatca atagccaact catcagtatc acaaatttca acattgcagc caaactttgc
     4381 cataataata cccaaaattc cactaccaca accaagatct aaagctctta atttactttt
     4441 agaaaatttt tgtaaaaatt ttacacaaga atatgtgctt tcgtgatgtc ctgagccaaa
     4501 ggctaaggct ggattaatct ttatatttat aaaattcttt ttttcttctt gccaagtggt
     4561 atggatgtaa acattatcca ctaaaatagg ttttatgcct tttttatatt cttgtatcca
     4621 gtccttgttt tctttctcta caagacttaa attagaaata attttatggt ttaaattgaa
     4681 agtagttgta agtttttgag caaatatttc aagtgcccat gaaagctctt ccaaactctc
     4741 atgggatcta atgtaaacac cattatcttt ctcttctatg gcttctatac ctaaatcaaa
     4801 agcaaaatca agaaataaat ttttataccg ctcttctacg ataaagaaca attcgtaata
     4861 ttttttttgc atttagaatt ttaaaaatca gcctttactc agctgcacct tctccacttc
     4921 ctgttcctaa aacatcttca agtttttcct ttaaaacttg tggagtaaaa ggttttacaa
     4981 tatagttatt tacgccagct tttaaagcag taatcacttc agcttttccg ccctcagttg
     5041 taaccatgat aataggcata tcttcatatt ttttctctgc tcttactttt tttaccaact
     5101 ccaagccatt catttctggc atattccaat ctgtaattaa aacttttaca tcttcatttt
     5161 tagttaataa atcccaagct tcaacgccat gctcagcttc taaaacatca tcgtgtccaa
     5221 gtcttgttag ggtattttta ataatccttc tcatagtaga actgtcatca acaactaaca
     5281 atttcacaat ttcgtccttt caaagttttt atagttttat tttacccttt ttagccttat
     5341 taatcaagct aaaaaatttt aaaaaacagc attatatcat cttttactta aatttttact
     5401 caaatattat tatttttata cttaaccgta aataaatata cacttaaacc taaaagaagc
     5461 aagctcactc caccgataag ataaatcgca taaatcatct gagaaagatc accaatagca
     5521 agtttaaata ccaacatcaa agcttctata gctaaagcaa tgataataga acccaaaaat
     5581 ctcaccatgg ttttttgaat tccaccttct tctttttttg tccttcctaa tacttcttgt
     5641 tcgatcaaag tttttgccaa atcaaaaata gctaaagcta aagttatggc aatggtactt
     5701 tcaaacatat gttctatgcc tatagcttga ttatcaaaaa gactaaaaaa acctttttga
     5761 aataaaaaac aagtaatcac aaataaaacc agtgcgaaac aaaaatacac caaacgacta
     5821 aattgagtaa aaacaaactc aaattttcct gcttgaataa tctttaaaat atcttcaagc
     5881 ttgatatcaa tacaaacaac aaaaagcaag ttatttttat catcgtaaat tggtatagaa
     5941 gctgttacgc aaagttcatt gtttaaaacc gaaggataag gatcgctcaa aacacatcgt
     6001 tttaatttta cagctctata aaaataagaa cgagtacttc tatcctcacc ctgccctatt
     6061 tcatgagcct tatttaagga aatcgcattt tctatttgca tgcctgaaat atctaaaata
     6121 tacaaagcat caaaaacaac aacttcatga gctattttat ccaaagctgt tttaatcgtt
     6181 tcaaggtgaa tatcaggaag tttattgggt agatttcttg ttaaaatata actcatataa
     6241 gctctagcac gatagcgatt atcttcaaat ctttgtatat cttttatata cattatatgc
     6301 cttctttatt gtgtttaaat tcaggtacaa tctttaataa agcctctgaa atatcttcac
     6361 atatttgtaa attttctatc tctttattaa gccaatcaag atcaaccttc tcattctttg
     6421 ctacaaaaat actctcatat tgggttttag catcattttc atcaatcaaa agctcttcat
     6481 aaagcttctc accttttctt aaacctgtga ttttaatttc taaatcattg cgattagaaa
     6541 gtaaaagcat ttttttagct aaatctatga ttttcacagg cttacccata tccaaaacaa
     6601 aaagttctcc cccttttgcg atagctccag cttgcaaaac aagttgcact gcctcagcca
     6661 caagcataaa ataacgcact atatcagggt gtgttaaagt taaaggctca ttattggcaa
     6721 tttgtgcttt aaatttcggt atcacactac cactagaacc taaaacatta ccaaaacgca
     6781 cacaagcaac ttcaaaattt tcatcactca tacttaaagt ataaagctca caaactctct
     6841 tagtgcaacc cataatattt gttggtcgta ctgctttatc tgtacttatc atcacaaatt
     6901 tagctacttt attttcttta gcactgtcgc ataaaatttt ggttcctaaa atattattga
     6961 ttactgctga atgtggattt tgttcgcaaa gaggcacatg tttataagcg gctgcatgta
     7021 aaataagctc aggtttataa gtttttaata cctcatctaa actttgctta tctaaaatac
     7081 ttaacaaaat aggagtaatt ttttctttat ataaatttaa atcatcattg atcttataaa
     7141 gattatactc actatgatca accataataa gatgcttagc accaaattta atacattgct
     7201 tacaaagttc actgcctata gttccacctg ctccacttac caaaactacc ttgtctttta
     7261 aaaaagccgc cacagcacta tcgtctaaat cttttggttt tctagcaagc aagtcttcta
     7321 tactaatatc tcttgcttca tttcttgtaa aagaaaatat ttttacatca caaataccat
     7381 aagctacaag ttcttcaaaa agttttttaa gctcttcttg ttcaagtctt aaagcaataa
     7441 tggcagtttt taccccttgt tctacataag attttatttt ttctttttct tctacaacaa
     7501 atttatcaca ataagtccct ataagctctt ttctcgcatc aactacgccc acaggaaaaa
     7561 gccctaaaga accttctttt gcgcctttta acaaatgtaa agccttagaa gttgccccta
     7621 ctacaataca aggagtttct tcttctttca ttttagaagg tttaaaatcc acaagcattc
     7681 ttttgctaat tcttaaagta cctataaaca tataagaaag aacaaaatct atcacaatag
     7741 cacttcttgg aaaaggatta aaaaaatcac taaaaaaata aaaaataaga aaaaaacaaa
     7801 actcagctaa aagcaaagcg ataaaaattt ttcttgcttc attgagggaa aaaaatctcc
     7861 aagctacttt ataaattcta aaaacaaaca aaaatgaaag ttttaaaaca agcaaaataa
     7921 tagcagaaac catcatgcca tgataaaaaa tactcggaat atctccacta aatctcaaag
     7981 aaaaagccag ataaacacta agtaaaatta aaacaatatc tgaagttaaa aaaaatgcta
     8041 atcttttgct tttataaaaa atcattttaa gcctttatgc tctttaagat cagttttgaa
     8101 atttcataaa catcatcttt gctcatcgcc gtaccacttg gcaaacaaat tcctttttgg
     8161 aaaaataact cactattgcc attaagataa gccttagttc ctttaaatac ttcttgagtg
     8221 tgcatagctt tccataatgg tcttgtttct atttgttcat ttttcaaatc ttctatgagt
     8281 tttgaaattt ttggatgcaa agtaatattt ttttgactga tatttatatc tttttgacaa
     8341 gcattaagtt catttttatc aaaatcaatc aaagctgtac ttaaccagcg attacttctt
     8401 gaattttcta attcatctaa aaagctaaaa tactctccta aaaattcttt ataccactca
     8461 taaatttctc tttttttaag cactctttgt tctaaaacct ccatttgtgc tacaccaata
     8521 gctcctaaaa cattgcttaa acggtaatta taaccatagt ctaaatgttc ataatgcaaa
     8581 caattttccc tagcttgagt gctataaaat cttgcttttt caatcttttc tttatttttt
     8641 cctataagca tacctccacc tgaagtggtg ataattttat tgccattata agaataagct
     8701 ccaaattctc caaaagttcc taaggcttta ttcttataaa aacttcctaa agcttcagca
     8761 gcatcttcga ttaaaacaat ttcattttcc ttgcaaattt caacaatttc atccatttta
     8821 gccgcattgc cataaagatg agttaaaatc aatgcttttg gttttttttc acattcctta
     8881 atagcaagtt ttaacaaatc tacatcgata ttataagttt catcacaatc tataaataca
     8941 ggttttgctt taagataaca aataggcgcc actgaagcga taaaagtaaa agaagaagcc
     9001 aaaacaatat catcttgttt tacccctgcc acccttaaag ctaaatgcaa agctgctgta
     9061 gctgaattta aagctaaggc attttcactt ttgctataat cttttacact ttgctcaaag
     9121 cgatttacaa attcacccaa aggtgctata taattgcttt tgaaaacttc ttctatatat
     9181 tttaattcat taccgcccat atgcggagga gaaagaaaaa atctcatgat ttatcctttg
     9241 tataaaacaa aatttttata aattaactct attttaccta aaaaaattta caaagaatca
     9301 aacaaaaatc tttttataat catttcatat ttttcttttt gcaggcactc ccacaaaaac
     9361 acctttttca ttttggcttt taaccaaagt tgctccacca cccaaaatac tatcatctgc
     9421 taagcttaaa ttaggcaaaa cacaagaatt aatccctaaa aaacaatttt taccgatttt
     9481 tacattaccc gcacatttag cccctacgct tacatgagaa aattccccta tcacgcattc
     9541 atgctcaatc acacttgaag tatttaaaat cacgcctttt tctattttgg ctttagcgtt
     9601 aatcactaca tagggcataa ttaaaatccc tgcattttct tccacgcttg cactaggact
     9661 tataagtgca cttttatgaa taagattaac tattttaaag ccattttctg aaattttttg
     9721 ataaatcttt tttcgaattt cattgtttcc tatagctata aaaaaatcat atttaggcaa
     9781 ggtgttttca aatttcattc ctttaaaatc atctaaaaaa atacattctt tatagcccat
     9841 atttttagcc acatcttcac aaacaagccc atgaccacta gcaccataaa tataaatttt
     9901 ttcagttctt gccattaaat ttctctgttg taacatggcc ttctttgctt accccgcttc
     9961 gttttaaaac ctttaaagct gttaaaaaca tgatttttaa atcaagcaaa aaagaaatat
    10021 ttttcacata atacacatca agttcgaatt ttttctgcca agaaatagca tttctgccat
    10081 ttacctgcgc ccatcctgtt atacctggac gcaccttatg gcgcaatttt tgctcttcat
    10141 tataaaggga taaatactca accaaaagag gtctaggccc cacaaaactc atatcccctt
    10201 ttaaaacatt aaaaagttgc aaaagctcat ccaaacttaa gcttctaaca atttttccaa
    10261 aggctttcaa acgcaattca tcgcttaata actcaccctt ctcatctctt tcatcgctca
    10321 tggttttaaa tttataaatt ttaaaaattt tttcatctaa cccagggcga ttttgagtga
    10381 aaatcacact tccttgagtg atttttaaaa gtaaagcagt gattaaaatc accggagaaa
    10441 aaagtactaa aagcactaaa gctaaaataa aatcaaaaat tcttttaaaa actttttcat
    10501 acattcttaa ttaccctatc ataaagtttt aaataacgct gtgcgatatt attttcatcg
    10561 tattgtaaag catcttgggc agcattttta gctaaattta atcttaattt ttcatcttct
    10621 aataaaagtg aaattttttc gcttaaatcc ttagcatttt ttgtttttgc ccaaagtcca
    10681 tcataagcat tagaaatagc ctctacacaa ccttcacaat cactcaccac tatagccttg
    10741 ccacaagctt ttgcctccaa aacacttaca ggaaagcctt ctttatagct tggtaaaaca
    10801 aaaatatcac aattttgcaa aagctcgact atatcacttc tagcacccaa ataatgcacc
    10861 acacccgagt ttaaaaactc caaactcgca caagaaggat tttcatctct tccaccaact
    10921 aaaacaaaat ttgctttgtc ttttagcata gtagcacttt cataaaattc ttttacacct
    10981 ttatgccata aagctcttgc tatcataaga acaataggtt ttttatctat atttaaattt
    11041 ctccaaaaaa gctctttttt ttccgattct atataaatag gaaaaaattt ttttaaattg
    11101 atccctacgg attttatcac acaaatttta ttttccttaa gtcctaaatt ccgcataaac
    11161 tcggcattac tttcattgac aaaaataaat tggtgtgcaa atttaaaact taatttataa
    11221 agattattaa taacaaaacg tactaaattt gccttaaaac cttgatctat ataaaaagat
    11281 cccaagcctt ctaccaaagc aaaacgataa ggaatttttg cccattttgc cgctaaaatt
    11341 ccaaaggtat tgcttttgtg tgccgcactt tgaataagat caagatttaa attttttaaa
    11401 accttagcaa gataaaaaaa attctttaaa actacaaaag gatttaaact agctcttgaa
    11461 aactcataaa caattacttt taaaccaaga tctctaagtt tttgcgtgta ttcatcttgc
    11521 ggcactataa caaaaacttc atcttttcta tcttttaatg cttttataat aggcattcta
    11581 aaatgataaa tacttgctcc tgcatgtgat aaaaatccta ttctcatttt caacccttaa
    11641 attttaagtt taaaaacctt agcatctcta gaattaatca ccaagtcaaa taaattctta
    11701 tcataatttc ctaaaaaaaa catttgcaca taagcactat taaacatggt tttatccatt
    11761 aaaataaatt gtgcgtaagg aatagcacta tcctttaaat aaaaaatata aaactgagcc
    11821 ttatcatcaa ttggagtgat tttgtattca ccttgtttaa tagaattaat ctctacgata
    11881 ctatttacag aaaccacatt atcacctatt ttaaaacttc taaaatcatc gcttaaaacc
    11941 actccgttgc taagataaat ttctccattt ttaacatcaa gtggataagc tgtgctaaag
    12001 gtaaaaggtt tatccaaaac tcctgtatct aaattaataa aagaaaaact agccaccgta
    12061 gaaaaaatca aagacattct agcgggcata taaagataaa tatcacgagt ttttggcgta
    12121 tcgattttaa aatcaggttt tgataatgaa gctagaaaca aatccacatt gctttgatta
    12181 taatctttca tcatggcttg caaaatgtct gtttttaaaa tatcattttg cggagcataa
    12241 aagctttttt ctgtatattc tacactaagt cttgccatat tagctgcagc ttgttcatct
    12301 ttgcttaaag caaaagaagg gaaaaaatta tccttaccta aatgctttcc accatctact
    12361 aaagttttca catcgctata ataacgcaca ggataaccat aatcccacca agttaccaca
    12421 taatcttctc tattggctat attttttaat tgatttaata atgatgcttc attttgagaa
    12481 aaaactgttg gcgctttata gttgtaaata tggataaata ctggagctaa agtcaaaata
    12541 gttgcaaaaa caatacaaac atttgaagtt aattggctat attttttaac cattatagcc
    12601 ttaaactcgc tcaataaaaa accaaatcct aaggccatta caggtacaga ataaatggta
    12661 aatctaagcc ccccttttaa ggctaaaaac ccaagcacca atataggtaa agccataatc
    12721 atacttttat gttttctcaa aagccataca aaaccaaaca aagaaaacaa aaaaacaatt
    12781 tcactaccac taattcttcg cataaattcg ctaagatcta cattttcaac ttcttgtatg
    12841 gtttgattga cattaaaata cataaagccc tgcgttaaat tcgcactttc atcacttcta
    12901 aaaatataaa atttaagctg ataaagtata ggatcaaccc caccacttaa aatcaaaaat
    12961 atcaaagttg cactacctaa aattcctata atcataaaat ttaagcgttt ttgctctaag
    13021 gcgaataaag caaaaagtat tactataatg gcactttgat aaaaccatgc tatatttgaa
    13081 agagtaagag aagacaaaat cacagctata taaaaaatct tttcttttct atgaaaaata
    13141 agtgtataaa ttaaaaaaag tccaattaaa gctacattta aagtataact tgaaggatac
    13201 caccaaagat aaattcctat aaataacggc aaggcaatca atgaaaaaaa gtcttttttt
    13261 aaaatcattc ttaccataaa aaataaaata aacataggca aaacaattac cagcatatcc
    13321 gtatcataat acccactcat agtgcgatta taataactgt ttgctatact tgctaaaaga
    13381 gcagctacaa agcccattaa aggacgtttg tattcgttag ctagcaaaat agtaggaatc
    13441 accaccaaag aagataaaaa agtactcata tataaaatga tactttcaaa agaaaaaggt
    13501 gtgattttat aaagccaata agtaagcgcg gataaagaag atccataata actcaaatca
    13561 ttaggctgat gaaaacctgc tatcatatct cttgcgccct cagcaaaagc atagccatca
    13621 tttgaaatga tcattaactg attattgaaa aaatactcat taaactcact tgcccaccaa
    13681 acccaataaa acctgcaaaa tacactaaaa acataagcta atataatcat cgcaaacaaa
    13741 actaaataag ggttttttaa atactctttt ttcaacatct tttatcctaa taaatatttc
    13801 aaagcatcgc gtgcaatttt tactttatca aaagctttag ccctagtttt agccttattt
    13861 ttatacgctt ttcttaattt atcgtcttca agcatagtct ttaaaccctg aaacatggag
    13921 ttttcattat ctacttctac taaaagtcca aattcatcat cgccaaaaag ctctcttgcg
    13981 ccacttttat gatcagtgca aaccaccgca caagaacaag ctaagctttc aattaaaaca
    14041 tttgaaaagc cttcaaatac agaagcaaaa gcaaaaaatt cgcatttagc catgtattta
    14101 taaggattat tatcaaatcc taaaagcaaa accttttctt ctaaatttaa ctctttaatc
    14161 aaagctaaaa gctcatcttt aagcacacct tcacctaaaa tcacaagctt taaatctgtt
    14221 ttcaatcttg cataagcacg aattaataaa gcatgatttt tacctttatc aagcctgcct
    14281 acacttaaaa taaatttatc ttttaaagct acatcttcaa gagctttttg ctctatattt
    14341 tctaaatcga tggcattgta taaaatttca catttttttg gatttatact aaaattttgc
    14401 actaaatctt ctaaatttcc cttagaatta ggcaagatta aatcagcttt tgggtaaagc
    14461 aaagaaatta aaaatttatt tgccaaagaa ttaaaattat ttttcgcata catcacactt
    14521 ggcgtagtgc attcattgat cacaaggcga gttttgtttc caaacattct tgccattaag
    14581 gctatataat taggtcgatt taaaaaaaca aattctgtat caatgcctaa atttctgcaa
    14641 agttttttat attttaaagc caaaaaaggt agttttaaaa atttcaaaat aggattttca
    14701 ctaggttttg aacattctaa aaaatgaatt tgacactctg gaatttcata agaaatttta
    14761 tcattcatta aaatcaaatg cacttcaaat ttcaaactta aaataggcaa taaagtcgcc
    14821 acaact
//
LOCUS       DAEDTT010000037        14320 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.037, whole genome shotgun sequence.
ACCESSION   DAEDTT010000037 DAEDTT010000000
VERSION     DAEDTT010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14320
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.037"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            7..324
                     /locus_tag="KLC54_000803"
     CDS             7..324
                     /locus_tag="KLC54_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron protein, hemerythrin family"
                     /protein_id="HBD9177192.1"
                     /translation="MSEWLLEHILHHDVMIGNWLSDQILSKQEEELEKINEEILYENT
                     PTTPTAKQVKHKEYEFIYSCPCRTNHILSYTEHLDILCHKKQLRCKKCQKNLFYVKSE
                     LKD"
     gene            327..935
                     /locus_tag="KLC54_000804"
     CDS             327..935
                     /locus_tag="KLC54_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HBD9177193.1"
                     /translation="MFPKWDDSYSVHNAKIDEQHKKLFELAGKVEFMFDKPVYKDDVK
                     ALLAEFFNYMKDHFNDEEKYMKLIGYPDLEEHKRIHKEIIQSMIDLIKNIKSTNDLKE
                     KLYTVSKKWLLEHILYEDMKVEQYRRSSLASEDDGEVSFEEVKEEKDDENAVYLYTCE
                     CVGQMHDVPFGIHQKIQLKGVKFKCKKCKEAIQFYKKYSENF"
     gene            996..1181
                     /locus_tag="KLC54_000805"
     CDS             996..1181
                     /locus_tag="KLC54_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177194.1"
                     /translation="MDKKIKYFILDKFDYSYPILTKDTKCSFCENFFPIEYSSNLKTI
                     EKECPFCNNKMDIKLKD"
     gene            complement(1178..2209)
                     /locus_tag="KLC54_000806"
     CDS             complement(1178..2209)
                     /locus_tag="KLC54_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HBD9177195.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(2288..3184)
                     /gene="sppA"
                     /locus_tag="KLC54_000807"
     CDS             complement(2288..3184)
                     /gene="sppA"
                     /locus_tag="KLC54_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HBD9177196.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILMPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVVDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            complement(3172..4401)
                     /locus_tag="KLC54_000808"
     CDS             complement(3172..4401)
                     /locus_tag="KLC54_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HBD9177197.1"
                     /translation="MFIAAARYLFLCDEDFTILENQAFVFEDKILELGELDNLRKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSMLNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASQKGIRVVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAYFALDLAKKQNLLVSTHFLESK
                     AENIWLRESKGGFKKWLENFTLHPKPLYAPKDFAKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMATLYPARALNLNLGELKKGKIADFSVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            4492..4971
                     /gene="aroQ"
                     /locus_tag="KLC54_000809"
     CDS             4492..4971
                     /gene="aroQ"
                     /locus_tag="KLC54_000809"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HBD9177198.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            4974..5447
                     /gene="folK"
                     /locus_tag="KLC54_000810"
     CDS             4974..5447
                     /gene="folK"
                     /locus_tag="KLC54_000810"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HBD9177199.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            5457..6911
                     /gene="flhF"
                     /locus_tag="KLC54_000811"
     CDS             5457..6911
                     /gene="flhF"
                     /locus_tag="KLC54_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HBD9177200.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLTKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLSF
                     FSTGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            6904..7770
                     /gene="flhG"
                     /locus_tag="KLC54_000812"
     CDS             6904..7770
                     /gene="flhG"
                     /locus_tag="KLC54_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HBD9177201.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDELKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            7789..8145
                     /locus_tag="KLC54_000813"
     CDS             7789..8145
                     /locus_tag="KLC54_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177202.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNESKERRRNAKRAA"
     gene            8126..8818
                     /locus_tag="KLC54_000814"
     CDS             8126..8818
                     /locus_tag="KLC54_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HBD9177203.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNNNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLENECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            8818..9897
                     /gene="fliM"
                     /locus_tag="KLC54_000815"
     CDS             8818..9897
                     /gene="fliM"
                     /locus_tag="KLC54_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HBD9177204.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            9894..10736
                     /gene="fliY"
                     /locus_tag="KLC54_000816"
     CDS             9894..10736
                     /gene="fliY"
                     /locus_tag="KLC54_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HBD9177205.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNASDTLKAP
                     LVYAIFDIANGGKIGILAGAVLMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            10805..11410
                     /locus_tag="KLC54_000817"
     CDS             10805..11410
                     /locus_tag="KLC54_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HBD9177206.1"
                     /translation="MDTKIIKDVEKFENIPDLEKAITFFGSARLKEDNFYYQQAKILA
                     QKCAQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            11410..12426
                     /gene="mnmA"
                     /locus_tag="KLC54_000818"
     CDS             11410..12426
                     /gene="mnmA"
                     /locus_tag="KLC54_000818"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HBD9177207.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQKDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFKLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(12454..12780)
                     /locus_tag="KLC54_000819"
     CDS             complement(12454..12780)
                     /locus_tag="KLC54_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002923175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HBD9177208.1"
                     /translation="MIFLSLAFLYTHYFFASITAHISAMFFVFYSAGLALGAPPLLYA
                     FIMIASGNVMMALTHYATGTAPVIFGTGYVTLKKWWSIGFVISIVDIVVMIAVGLFWW
                     KILGFY"
     gene            complement(12823..13215)
                     /locus_tag="KLC54_000820"
     CDS             complement(12823..13215)
                     /locus_tag="KLC54_000820"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HBD9177209.1"
                     /translation="MFITATAPNPLVLYFLSPLEIKSTPNASTFAKDKLKELVKMKNS
                     EKIMLSVFVSLLLLWAGALGLFFGISLDATSVALLGLSLVLISGVLTFGEVLAEKAAW
                     NTLVWFSALVMMATLLGKLGVTQFLAEA"
     gene            complement(13158..13502)
                     /locus_tag="KLC54_000821"
     CDS             complement(13158..13502)
                     /locus_tag="KLC54_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HBD9177210.1"
                     /translation="MARGVIKTGLGEHLAYHFISILGKKTLGIAYSIAFCETILAPVT
                     PSNTARAGAIINSIVQVIARSFKSTPEDGTQNKIGTYLSLVNYQEPILFHQLCLLQLQ
                     LQILWCFIFSLR"
     gene            complement(13725..13874)
                     /locus_tag="KLC54_000822"
     CDS             complement(13725..13874)
                     /locus_tag="KLC54_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HBD9177211.1"
                     /translation="MENNSWHFLGLFIAVIMAVILQVMPLGAVCMIAIAIVALSGITT
                     TQLKI"
     gene            complement(14097..14194)
                     /gene="ffs"
                     /locus_tag="KLC54_000823"
     ncRNA           complement(14097..14194)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="KLC54_000823"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
BASE COUNT         5373 a         2208 c         2279 g         4460 t
ORIGIN      
        1 actataatgt cagagtggct tttagaacat atattacatc atgatgttat gataggaaat
       61 tggctttcgg atcaaatttt aagcaaacaa gaagaagagc ttgaaaaaat caatgaagaa
      121 atattatacg aaaacactcc aacaactcct accgccaaac aggtaaaaca taaagaatat
      181 gaatttatct attcttgccc ttgcagaaca aatcatatac tttcatatac agaacacctt
      241 gacattctct gtcataaaaa acaattaaga tgtaaaaaat gtcaaaaaaa tttattctac
      301 gttaaaagtg agttaaagga ttaaaaatgt ttccaaaatg ggatgatagc tatagcgttc
      361 ataatgcaaa aatagatgaa cagcacaaaa aactttttga acttgcaggt aaagtagagt
      421 ttatgtttga taaacctgtt tacaaggatg atgtaaaagc tttattggct gaatttttta
      481 actacatgaa agatcatttt aatgatgaag aaaaatatat gaaacttata ggatatcctg
      541 atttagaaga acataaaaga attcataaag aaatcattca atccatgata gatcttatta
      601 aaaatataaa gtccactaat gatttaaaag agaagcttta cacagtttct aaaaaatggc
      661 ttttagaaca tatactctat gaagatatga aagttgaaca atacagaaga tcttctttag
      721 cttctgaaga tgatggggaa gtaagctttg aagaagtcaa agaagaaaaa gatgatgaaa
      781 atgcagttta tctttataca tgtgaatgcg taggacaaat gcatgatgtg ccttttggaa
      841 ttcatcaaaa aattcaactt aagggtgtaa aatttaaatg taaaaaatgt aaagaagcca
      901 tacagtttta taaaaaatat tcagaaaatt tctaattaac tatttatgcg ttaaaataat
      961 aaataaagta taagttagac aaagaaggaa atttaatgga taaaaaaata aaatatttta
     1021 ttttggataa atttgactat tcctatccta tactaaccaa agatacaaaa tgctcatttt
     1081 gtgaaaattt tttcccgata gaatatagct caaacttaaa aacaatagaa aaagaatgtc
     1141 cattttgcaa taataaaatg gacattaaac ttaaagacta agccttagtt ttacttacaa
     1201 tattaataat atttgaagct acttcatcag caagttctaa atgggaagta aagcctacac
     1261 aagaacaatt aatctcgcct aaaacatatt tatcattgcc cttttcatca gtatctaaaa
     1321 taaaatcagc cgtccaaatc aatggtaagt cgtaattgcc taatttttcc cttaccttag
     1381 gaagctcgcc taaaaacata tccaccaaag ttttccaatc ttctggctta tcatagcgat
     1441 attttgcccc actaaaaagc gtagcagaaa aagcatcagc atcttcagct ggttttttat
     1501 gcactacatt tacaggggtg ttataaagca ttaaaagtct gatttcacct tctttaatgc
     1561 gcggtaaaaa agtcatatcc acaagcatac cattatcacc tatgatatat tgctcacaaa
     1621 aatccataaa ttctccaagt tctctatgtt ctacatgatt atccttagct tctgtgcatt
     1681 tgatttttgt gtttaaaggc aaactatctc cactaacatt accctctaca ctcacacgcc
     1741 aaattccctc tcctgtagag ccacgatttt gttttaaaac cctttcacct ttagccaaac
     1801 tttttggaaa attttcttta aaagtcttaa tatcatagta agcataagta tcgcttggaa
     1861 caagatcagt atctgctaat tttgtaagcg catctttagc gccataacct atcatagcat
     1921 caggatgagg catacctaca agcttatcgg cacaaagttt tcttaacata tcaaaatact
     1981 cattttcttc tttaagattg ccaggattga tgcgagaaac ataaccatca aaattttctt
     2041 ttacatattt gtaaatttca tcttttttac ccacttcaaa aaaaatcacc tcagcattcc
     2101 aacccttagc ttttaaggca tttaccatag gcatagtatc ttttctataa ccatcttcac
     2161 ctttatcact cccaccttta acttcgaaaa aaacaatatt ttttttcatt attttactcc
     2221 ttatctaaga tataaataat tattgcataa aaatattaca aaaattaaat aaaaatattt
     2281 atatatttta tctagcgttt ataaaactgc tattagtctt ataagcgatt tcgattaagc
     2341 ttttacttat caagcttgat gtttgtcctt ctaggcgatt aagaaattta tcaatcttat
     2401 cttcttcttt ccaaacagga tttgaaacat tagcaagttt ttcaagctcc tttttagcat
     2461 tttcataatt actaagctca tctataagac caagctcctt agctttggca gctaaaaaca
     2521 ctcttgcatt tgcccattga tcttttttat taagatctaa tgctctttcc ttggcaacaa
     2581 aacctgtaaa aagatcataa ctttgatcaa ttaaaccctg taaaaaattt ctttcattct
     2641 cattccaagc tcttgcaaaa gttccagcac ttttaaattc acctgcttga atagtttgtt
     2701 ctttaatacc gagtttatta gccaatccgc ttaaatcagc tccttgcata atcacaccga
     2761 tagagcctat aaaacttgct ggattggcta aaattttatt agctccaact cctgctaaat
     2821 aacttccgct tgccatagtt ccgcttgcat aaacaagcac aggcttttta atttttaaat
     2881 cctttatagc tagagctagt tccatactag gagcaaaagc tccaccagga gagtctacaa
     2941 caaaaagcac tcctttaata ttgctatcat ttttagcatt gataattttt tccaaaaccg
     3001 cagagctatc aaaaatttca ccctttaaat caatgcgttc taaatttgca agattggagc
     3061 ttgaatttgc actaggcatt aaaatccata taacaatcaa caataaaaca aaggttttaa
     3121 aataagtatt gataaatttt ataccgcatc ctaaagcctt aaaaaatgat tttaaaattt
     3181 gcattctttt ccttttataa ataatttatc cacttcctta gcatttaaaa taaactgcaa
     3241 aggagcttgc tttttatcac attctcctag ctcaaatacg ctaaaatcag caattttacc
     3301 ttttttaagc tctcctaaat ttaaatttaa agcccttgca ggataaagcg ttgccatttg
     3361 caaaagctta gaggctaact ctaataaatc aaaattctta tgtataagca aattcgcgcg
     3421 catttcatca agtaaggaca atgaaatatt tgagctaagt ccatcggttc ctaaatggat
     3481 attcaatcca ctttttaaag ctgtttttaa atctaagctt ttttgactta aaaggcgatt
     3541 tgaaaatgca caatgtgtaa tagaatgtaa atttttatcc aaccattcat attcttttag
     3601 ataaacacaa tgcgtaaaaa gagtccttac tcctttaaag agtttagcaa aatcctttgg
     3661 tgcataaaga ggcttaggat gaagtgtgaa attttcaagc cattttttaa accccccttt
     3721 agactctcta agccagatat tttcagcctt gctttctaaa aaatgcgtgc taactagtaa
     3781 attttgcttt ttagctaaat caagagcaaa ataagccaaa ctaggatgag ttgaataagg
     3841 agaatgaatc gaaattgctg ggataaaaaa atcattttta aatttcaaag aattttcaaa
     3901 tctttttaaa aattcttgtt ttttatcttc aacttgattt tcatttgtac ccaaaatttc
     3961 attaaaaaat actacacgta tacccttttg actagccttt aaacaaggat ctaaatcact
     4021 cccaaaactt gaaatttcac ctatagtgcc tataccgctt ttttgcattt ttttaatgct
     4081 ttgaagtatt aattcttctt tggcctgcgc atttaacatg gaacgagaat ttataacact
     4141 tttaagccaa attaaaaatt ctccaaaatg taaagttgtt gaatttgcac taaattctaa
     4201 gtgtgtgtga ggatttataa aagcaggtaa aataaccgaa tttttaggtg ttttgataat
     4261 tttagccttg ggatattttt ttcttaaatt atccaattca cccaattcta aaattttatc
     4321 ttcaaaaaca aaggcttgat tttctagtat tgtaaaatct tcatcgcata aaaaaagata
     4381 tcttgcagca gctataaaca cgattttcct ttcaaaaatt acattgtagc aaaaatttat
     4441 ttttaaaatg ttataataaa aggttaaaaa taaattttta aggttaaatc catgaaaata
     4501 atgattatcc aaggcccaaa tgttaatatg cttggcgtaa gagaagtggg aatttatggt
     4561 gctatgaaaa tggaagaaat tcatgagcaa atgaaacttg cagcatcgca aaacaatgta
     4621 gaacttgact ttttccaaag taattttgaa ggtgaaatcg tagataaaat tcaagaatgc
     4681 cttggaacag ttgatggaat tattatcaat gcagcaggct atactcatac ttcagtagct
     4741 attcgcgatg ctattgcagc agtagcttta cctacaattg aagtacatat tagcaatgtt
     4801 tatcgcagag aagaatttcg tcaaaaaagt cttatagcgc ctgtatgttc tggaactatt
     4861 gttggttttg gtccttttgg ctatcacttg gctttaatgg gtataattca aatttgcgaa
     4921 caaataaaaa atttgcgcgc gatgcaacaa gcacaacaaa cgaataaata ataatgctaa
     4981 aaattcaagg agtaaaacac tttgaaaaaa gtcgtttttt tccttttttt agtcaaaata
     5041 tacgatcttt taaatattta gctcttatag gcttaggaag caatatagag cccgaaaaaa
     5101 aaagatttga tatgcttttt cgagtaatga tggatgataa aagatttaaa attttatcca
     5161 catctcctat gttgataaat gaagcctttg gttttaaaga gcaaaaagat tttaccaatg
     5221 ctgttatgtt gatacaaact aatttgcatg cacgagcact tttgaaagtt ttactttatt
     5281 atgaagtaaa atttaaacgc aagagaactt tcaaaaacgc tcctagaacg cttgatttag
     5341 atcttttata cttttcacaa aaagtcaagc gtgataagtg gtgtgaggtg cctcataaag
     5401 gggctaaaga aagagtgagt gtaattttgc ctttaggcat gatataagga atataaatgg
     5461 gacaacttat acatactttt actgttgaag atacagaaca aattataccc aaagtaaaag
     5521 aagattacgg agataaagct ttaattataa caaataaaca aattcgtcct aaaaccttaa
     5581 atcgcagtgc gctttatgag gttatggtag ccatagaaga aagcgactat gaagaacact
     5641 taaaaaaaca aggaaaatct ttacctgcaa aaaaaagctc gccaaaacca tcttctacct
     5701 ctcttgcaga agaaaaaatt agatctcaaa tccctcaaga agatgaagat gtagtcttgg
     5761 atttctcaaa cactcgctta aatacaaatt taaacactgt aaaaaacaat gacttaacta
     5821 aaaaaaccta tcaagatttt ccacaaaaca aaatcaaccc tcatcaaaat aagactctag
     5881 gctttgatga ttttaaagaa aaactaagtg aagttagcaa tgaaatttct aaagtcacaa
     5941 acacaccttt agaaaattac acccctaatc caaattataa taaaaaaata gaaaattttg
     6001 aaaagcaatt tgaaaaacaa atcaacaagc ttaacgataa aatagatctt cttgcagata
     6061 tgatgtggga cgataaagct gaagctagaa aaaatcttat gatacctcct gaatttgcaa
     6121 gtatttataa acaagccaaa gaaagtggaa tgcttgaaaa tcatctagaa gcgattatga
     6181 aagcaactat agaaaatatg ccagctgcta tgaaaaccaa caaagatgcg gttcaaagat
     6241 attttcactc acttttaaga aatatcttgc cttgtcgtgt tgaaagcgat ataaaaaaac
     6301 aaaaaatcat gatgctagta ggcccaacag gagtcggaaa aacaacaacc ttagctaagt
     6361 tagcttttcg ctatgcttat ggagataagc gttataaaac aggtattatt acgcttgata
     6421 cttatagaat cggtgcggtt gagcaacttt ttcagtatgc aaaaatgatg aaacttccta
     6481 ttattgatag catagaacca aaggatttag atgaagcgat aaaaagctta aataattgcg
     6541 aagtaatttt agttgatact ataggaaatt cacaatacga tcaaagcaaa cttgctaaaa
     6601 ctaaagaatt tttaatgcac tcaaatgcag aaattgatgt aaatttagtg gtttctgcaa
     6661 acaccaaaca tgaagattta atggaaattt ataaaaattt ttcattctta aatattgata
     6721 ctttgattat tactaaattt gatgaaacaa aggtttttgg aaatatcttc tctcttattt
     6781 atgaaacaaa tattcctcta agctttttct ctacaggaca agaagtgcca gatgatttag
     6841 aagtagccaa tagtgatttt ctagttcatt gtattttaga agggtttaac aaaggaaaaa
     6901 ataatgaata accaagcaaa taaacttcgc aatctcatga gtcaaaatgg aaccaaaaaa
     6961 tcccaaaaca ctcattttat agctattaca agtggaaaag gtggcgttgg aaaaagtacg
     7021 attagcgcaa atctagccaa tgttttagca aataatggct ataaagttgg gctttttgat
     7081 gctgatattg gcttggcaaa tttggatgtc attttaaatg tacgcataca aaaaaatctc
     7141 ttgcatgttt tacgcggaga atgttctttg gaagatattt taatagaagt taagccaaat
     7201 ttatggctca tcccaggcga aagtggagat gagattttaa aatataatga taaaaatatt
     7261 tacgagagat ttttaaatca agcaagtatt ttagatgagc ttgattttct tattatcgac
     7321 acaggtgcgg gtattggtgg aaatatttta aattttttag aaatggctga tgaagttata
     7381 gtagtaactg ttcctgatcc tgcagcaatc actgatgcgt atgcaaccat aaaaacaact
     7441 tctaagacaa aagaaaattt actaatgctc tttaatgttg taaaaaatga aaatgaagct
     7501 ttaaaagttt ttgaaaatat taaaaaagtt gcagatgcaa acattaaaaa tcctttaaat
     7561 ttagaattct taggtcattt aagcgcttct aaagatgtaa gtggtagtat taaaaaaaga
     7621 actttattta gcgatgaaaa cacagcctca agtgatgagc ttaaagccct agcctccaag
     7681 cttttatata gattggaacg gaaagtgctt gataatgttt caaatcgtag tttttcaagt
     7741 ttttttagaa aaattattga aagattttag caataaagag aagagattat gaggccagaa
     7801 aattacgtag catttttcac tgtttgtgga ttttttatag gacttgcatt tagcattatt
     7861 agtatagatg aagcctttga tatactgatt tttacttgtt ttattacttt tatgttttat
     7921 gtttttgttc atattgctat tatgaatttt atagatgtaa agaaaattag tggcagaatc
     7981 tttaataaac acgattatga aaaaactagc aataatatta tcaacgattt agttattcgt
     8041 gaaaagaaaa tggatataat tttagaaaag ctcaatgaag aaagagaaga gctaaagaaa
     8101 aatgaatcca aagaaagacg aagaaatgct aaaagagccg cctaaagctt atgcacaaat
     8161 gctaaagaaa gagcaagatg agcttgtact ttcttacatg ccagctctac gtgctatggc
     8221 ttttagacta aaagaacgct tgccttcaag catagatgtt aatgatctta ttagcatagg
     8281 cgttgaagaa atgataaagc tttcacgccg ttacgataaa gaacaaaata ataacttctg
     8341 gggttttgca agaaaaagag ttaatggctc tatgcttgat tatcttagaa gtcttgatgt
     8401 aatgagtcgc aataatcgca aaattattaa agatattgat gcaatcatgg atgaatattt
     8461 ccttgagaat gaatgcgaac ctgatgatga gtatctagcc aaaaaacttg atttagatgt
     8521 agaaaaaatc aaagaggtaa gaacagctca tgctattagc tataccctgc ccatcgatga
     8581 gcaaatcgaa ctttataacg aagacaatac tttagaaaaa attgaaaaag aagaactttt
     8641 agaaaaaatt cacgaagtgc tagatgatct taaagagcgc gatcagttaa ttattcagct
     8701 ttattattat gaagaattaa gcctaaaaga aatcagtgaa attttacaaa tcagtgaaag
     8761 cagaatttca caaattcaca aaaaacttct taaaaaactt agagaaaggc tagtgtaatg
     8821 gctgagatac tttcccaaga agaaattgat gctctacttg aagttgtcga tgataacacc
     8881 gacacaccca tagcctcaaa ttcaaaagat gaaaaagatg aaagaaatat cgttgtatac
     8941 gattttaagc gtccaaacag agtttcaaaa gaacaactta ggacgattaa aggcatacat
     9001 gataaattgg caagaaattt agcctctcaa atttcatcaa tgatgagaag tattgttgaa
     9061 actaaacttc attcagtcga tcagatgact tatggagagt ttttaatgtc tttgccaagc
     9121 ccaacaagtt ttaacgtttt ttctatcaaa cctttagatg gaaactgtgt tttagaaatc
     9181 aatccaagca tagcttttcc tatgatagac aggcttttag gtggtcaagg cgatagctat
     9241 gaagcttcgc gtgagcttac ggatattgag cttaatttgc ttgattctat tttgcgtatc
     9301 attatgcaaa gacttaaaga aagttgggct actgtaactg aaatttatcc tagtatagaa
     9361 gctaaagaat caagtccaaa tgttgtgcaa atcgtatctc aaaatgagat tgttatcatg
     9421 gtagtaatgg aaatcatcat aggaaattca agcggtatgg taaatatctg ctatcctgta
     9481 gtgcatttag aaagtatatt aagccgtttg gcaaaccgcg acattatgat gggtgaaacc
     9541 tcagccaaaa aatcacgcaa caaagaactt aaaactttaa tcggtcgtgc tgaagtggta
     9601 tatgaggcaa ttttaggaaa aaccttaatt aatgttcatg aatttctaga acttaaacaa
     9661 ggcgatatct taagacttga tagagaagca gatgataaag ctatagtaag catcgataaa
     9721 aaagatgttt tcttagcgca aattggattg catcgtttta gaaaatctat taaaatttta
     9781 gaactcatac gcacagataa agatgaaatc aaagaaattt tggaaaaata cgaagaagaa
     9841 cgtaaagcta aagctagtgt ttatgatgag cctgaagagg aggatgaaga aatatgatca
     9901 atgatttttt aaaaatgttt acaaatgaat gcatcagcac cattgaaggt ttaacaggaa
     9961 aaagtgctga atttagcgaa tacaaagaat ttgatgtcaa tgcaagcgat actttaaaag
    10021 cacctttagt gtatgctata tttgatatag caaatggtgg aaaaatagga attttagccg
    10081 gtgctgtttt aatgagtgct attggtgaat ggatgatggg tgaagaagag atcaccaaaa
    10141 acgataaact aggtcctgat gaaatggatg cagctaaaga agccatccaa aatatcattt
    10201 cagcattttc tacaacttta ggagctcaaa aagacattcc aaaaatggat tttagtatag
    10261 aatcttgtga atttgtgcct gaaagcgtag attttaaaga ttttaaaaaa ttatttttat
    10321 atgatgtaaa aataggcgat ttagaagaac aagtttcttt agccatggat caaacacttc
    10381 acaacattct aagtggaaaa cctgctgaaa caggaaatac aagcactgat tctaatcaca
    10441 acgctgaaga aaaagcgata atgcttagcg aagaacttaa aaatatcaat cttatcatgg
    10501 atgttcgttt gcctgtgcgt gtgcgtatag gcaataaaaa aatgctttta aaagatgttt
    10561 taactatgga tataggttca gttgtggagc ttaatcaact tgcaaacgat ccgcttgaaa
    10621 ttttaatcgg agataaaaga attgcttatg gcgaagtagt aattgtcgat ggtaattttg
    10681 gtgttcaaat cacagaaatc ggatctaaaa aagaaagatt agagcaatta agataaaatt
    10741 actctataaa tttaaaaaaa ttagctataa tgatttttta tagttttgcc aaaaaaggta
    10801 tttgatggat acaaaaatca taaaagatgt tgaaaaattt gaaaatatac ccgatctaga
    10861 aaaggctatt actttttttg gttcagcaag acttaaagaa gataattttt attatcagca
    10921 ggctaaaatt ttggcacaaa aatgtgctca aaatggtttt tgtgtgataa gtggtggagg
    10981 tggtggtatt atgcgtgcag ccaacgaagg tgctttttca caaaaaaata atacaaattc
    11041 aatgagttct gtagggttta atatattttt acctcacgag caaaaactta atgattttgt
    11101 agaatataat attacttttg agagcttagc catacgcaaa atggctctta ttgaaaagag
    11161 tctagctttt gtgatcttcc caggcggctt tggaacactt gatgaattgt gtgaaattct
    11221 tacattaaaa caattagaat ttaaaaaaga tgttcctatt attttgtttg ggagtgaatt
    11281 ttggcgaggt tttgatgagt tcgtcagaaa ttctttactc aaacttgaag tgatttctaa
    11341 aggagatgag ttaaagtata aaatcactga cgacttagat tttataatta atactttaaa
    11401 ggaaatttaa tgaaaattct agtcgctatg agcggtggag ttgatagtac agtcactgct
    11461 tataaactta aaaatttagg tcatgaagtt ataggttgtt atatgaagct tcatggcaag
    11521 ccaaattacc acgaagaaaa tatcaaaaaa gtagaaaaag ttgcaaactt tttgcaaatt
    11581 ccttatcata ttttagactt acaaaaagat tttaaaaaca aagtttacat gccttttgtg
    11641 gatacttata aagagggtaa aacaccaaat ccttgcgctt tatgtaaccg ctttatcaaa
    11701 cttggaaaac ttttagaatt tgctaaaagt ttaggttgtg aaaaacttgc cacagggcat
    11761 tatgcaagac ttgaaaacaa cttaataaaa accgcggtag atgaaagcaa ggatcaaagc
    11821 tattttttag ctagcgcaga taaagaagct ttaaaatatc ttatttttcc gctaggcgaa
    11881 atgaaaaaag aagatgtgaa aaaatttgct tccactatag aggttttaaa atcttttgcc
    11941 actcaaaagg aaagttctga aatttgcttt gttgaagata cttatgtgca agttttagat
    12001 cagtttatgg atacaaaaat tcctggagaa gtattagata gtagcggaaa agtggtaggc
    12061 aaacatgagg gctatatgca ctataccata ggcaaaagaa ggggctttga agtgcgtggg
    12121 gcacatgaac cacattttgt tttaaaaatc aatcctaagc aaaatcaaat catcgtagga
    12181 accaaagaag aacttaaaat cagtgaattt aagctaaaaa atatcaatct ttttatagac
    12241 gctaaagagc ttgattgcga agtaaaaatc cgctatcgtt caaaatctac accttgtaag
    12301 gtagaaattt atgaagataa aagcgcaaaa atcactctaa aagatcctgt ttatggactt
    12361 gctagcggac aaatggcagt cttttatgat catgataaag tcatagcaag cggttttata
    12421 gaataatttc taggaattaa ttcctagaaa ttattaataa aatcctaaaa ttttccacca
    12481 aaaaagccca acagctatca tcactactat atcaactatg gaaatcacaa aacctatact
    12541 ccaccatttt ttaagagtta catagcccgt tccaaaaata acaggagctg ttcctgttgc
    12601 atagtgagtt aatgccatca taacattacc tgaagctatc ataataaaag cataaagaag
    12661 tggtggtgct cctaaggcaa gccctgcact ataaaaaaca aaaaacattg ctgatatatg
    12721 agctgtaatg gaagcaaaga aatagtgtgt atataaaaaa gcaaggctta aaaatatcat
    12781 aatagaaatt tccccaagtc ccatagcaga agcaaattca ccttaagctt cagctaaaaa
    12841 ctgtgtaacg ccaagtttgc caagtaaagt tgccatcatt acaagagctg aaaaccatac
    12901 taaagtattc caagcagctt tttcggccaa aacttcccca aaagttaaaa ctccactaat
    12961 caacaccaaa gacaacccaa gcaaagccac actagtcgca tcaagagaaa ttccaaaaaa
    13021 caagcccaaa gctccagccc ataaaagtaa aagcgagaca aaaacactga gcatgatttt
    13081 ttcactattt ttcattttta caagttcttt taatttatct ttagcaaaag tagaagcatt
    13141 aggcgtggat ttaatttcta gcggagagag aaaataaagc accaaaggat ttggagctgt
    13201 agctgtaata aacatagctg atgaaatagg attggctctt gataatttac caaagaaaga
    13261 taagtgccta ttttattttg tgttccatct tcaggagtgg atttaaaact tcttgcaata
    13321 acttgaacta tagaatttat gatagcccct gctcttgcag tatttgaagg agtaactgga
    13381 gctaaaatag tttcacaaaa agctatagaa taagcaatac ctaaggtttt tttaccaaga
    13441 atactgataa aatgataagc caaatgctct ccaagtcctg ttttaataac tccacgagcc
    13501 acaataatag aataactata agctaaataa gagaatttga aaaaccactt aaagcgtctt
    13561 ttatacccgt tttagatttt aaatttgata tagcagtatt taccttttca tcttatactc
    13621 ttttgatata aaaaatcaag tactgaagta tttaaaggaa attttagtct catcaataag
    13681 ttgttgcgta gaagttttcg aagtagcttt ggtgtaaatt ttacttagat tttcaattgg
    13741 gtagtggtaa tgccactaag agctactatg gcaatagcta tcatacaaac agcccccaaa
    13801 ggcattactt gtaaaatcac tgccataatc acagcaataa aaagcccaag aaaatgccaa
    13861 gaattatttt ccaaacctac aaggagtagg tataggccaa aacacagctg caattaaaat
    13921 acgcagcacc aacaagggaa ttttctttct atccattgtt tatcctttga tattggtaat
    13981 gaaattctag ttaactaata ttttaataaa tcttaaaatt ataattttta aataaatttt
    14041 taatttataa aaaagctagc ctaattgaaa aatgggaatt ttaaaatgaa taaaaccctt
    14101 ccccagataa ctgcggcaca cactaaaatc aagtgctctg ctgtgttccc accctgaagc
    14161 ggtgcttaaa aatagcattg cacaggtcta agaaaaggct ctaaaattat atcacaatat
    14221 acttaaaaag ccttgagaat tataaaacta aaaaaataat atataaataa taaattggtt
    14281 aaaattttat acatttttta aaatttattt ataaaaacta
//
LOCUS       DAEDTT010000038        14202 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.038, whole genome shotgun sequence.
ACCESSION   DAEDTT010000038 DAEDTT010000000
VERSION     DAEDTT010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14202)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14202)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14202
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.038"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..408)
                     /locus_tag="KLC54_000824"
     CDS             complement(<1..408)
                     /locus_tag="KLC54_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HBD9177212.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKIQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVVDEALRGKGIGQAFLKKIQIWAKDQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFK"
     gene            complement(420..1508)
                     /locus_tag="KLC54_000825"
     CDS             complement(420..1508)
                     /locus_tag="KLC54_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HBD9177213.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDK
                     DLPFLLENLLNQYDFITLFTSPLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIISYSNRIKHEWLGISESVLENNGEYSE
                     RCVYFMLKGIFKTANPDFALAISGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            1607..4360
                     /gene="ileS"
                     /locus_tag="KLC54_000826"
     CDS             1607..4360
                     /gene="ileS"
                     /locus_tag="KLC54_000826"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HBD9177214.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYEKMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDGGCYDETLRAKELLPSHLLEEFIGLHIFKANEKILELLGEKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYKAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLEV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLAPNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            4354..4464
                     /locus_tag="KLC54_000827"
     CDS             4354..4464
                     /locus_tag="KLC54_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177215.1"
                     /translation="MLENPIPNSIIITTIAVVLAFSALAVFLIKKTKENK"
     gene            4461..5822
                     /gene="gatA"
                     /locus_tag="KLC54_000828"
     CDS             4461..5822
                     /gene="gatA"
                     /locus_tag="KLC54_000828"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HBD9177216.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASVIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASANLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEELNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            5832..7289
                     /gene="guaB"
                     /locus_tag="KLC54_000829"
     CDS             5832..7289
                     /gene="guaB"
                     /locus_tag="KLC54_000829"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HBD9177217.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVNALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            7286..7459
                     /gene="xseB"
                     /locus_tag="KLC54_000830"
     CDS             7286..7459
                     /gene="xseB"
                     /locus_tag="KLC54_000830"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HBD9177218.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            7452..8234
                     /locus_tag="KLC54_000831"
     CDS             7452..8234
                     /locus_tag="KLC54_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HBD9177219.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGANLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTSSELKIFTFNYEKLKCALLFGFEAHFDIFWQQIM
                     TKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFEKIIKEFKN"
     gene            8355..9653
                     /locus_tag="KLC54_000832"
     CDS             8355..9653
                     /locus_tag="KLC54_000832"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HBD9177220.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLDDASVIIGAILKEFGSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHHAYTQFLDVAKIRVINAEDEFLKNYKNE
                     SIKLYPSKDIKNCTMCIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYAKLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELVILPVYAAGEEPIELDLKAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            9646..9996
                     /locus_tag="KLC54_000833"
     CDS             9646..9996
                     /locus_tag="KLC54_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177221.1"
                     /translation="MSRFFLYLLIILILALITFVLREKLGKKTKPFFGVLLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            9986..12196
                     /locus_tag="KLC54_000834"
     CDS             9986..12196
                     /locus_tag="KLC54_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HBD9177222.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IHELCEVEFPTMPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFASGALELCLNFDEKGELKESLDERLVNLNTALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSSGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLFAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSKKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYNEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKDQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DTKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSGAMPKKVAKTSISISKPSNLSVTLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGTGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            12205..>14202
                     /locus_tag="KLC54_000835"
     CDS             12205..>14202
                     /locus_tag="KLC54_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit M"
                     /protein_id="HBD9177223.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEHLELEPKWNLGRDKKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEA
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLQEMLSKSSKALRVIDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSL"
BASE COUNT         5158 a         1835 c         2653 g         4556 t
ORIGIN      
        1 cttaaaaaca aaaccggatt tttcaaaacc cattttttgg atataaaatt catgagcttg
       61 tgttctaaaa aaacttgaac ttagttctaa ttcttcatat ccttgatctt ttgcccaaat
      121 ttggattttt ttcaaaaaag cttgacctat accttttcct cttaaagctt catctacgac
      181 aaaatcacaa atataaagac aatgattatg ataaagtaca ttaaagggca tgactccaca
      241 agctgctttg tagcttccct cattttcata ggcaaaaagt ttataatgtt gagtttgtgt
      301 agcaagttgg attttgtcta aaaaatcttt caaagatagg ttatttctta attgttttat
      361 caagggataa attttttcca agtcttcttt tagcttaatt tctttcattt ttaaatccct
      421 taaatttcaa aaatctcagg ttttaatttt aaaagtaggc aaaaagttgc caaaacagct
      481 tgttcttgca taaattcacg atctccatct aaataaagcg tttcttggat aaaagttcca
      541 tctctaaaca ttgcacctat ataaatagtg cctgatttta tttttccctc atctttttcg
      601 ccaactactc cgctaatagc taaggcaaaa tcaggattag ctgttttaaa aatacctttt
      661 agcataaaat aaacacaacg ttcactgtat tcgccattat tttctaagac gctttcgcta
      721 attccaagcc attcgtgttt gatgcggttg gaataactta taatagatcc ttcaaaaatt
      781 tcacttacac ctgaaatttt ggttaaggtg cttgcacaaa gtccacctgt gcaactttca
      841 gcaaaagaaa tttttaattt tttttctaaa agtttagagc ttataaaatg tataggatct
      901 ttacctaaaa ataccttttg tccaaaaaga ttttttacgc tatttaaaaa accatcaagt
      961 tttccaaaat tagcgcaagt ggccttaata agcacaagat tatctaaaag cttggttgat
     1021 tttatactta tctcataaga ttttgttagg gtttgcagta gcaatatagc gctttcatca
     1081 tccatgccaa aaatgcaaaa atatgcaaaa tttaatttta tatgcccaag aagattgggt
     1141 aatttttcgc ttggatttat tttaacgaca ttgatttttg aatttgaaaa attacacaca
     1201 aagctatttt tactaaattc tgctttatct ggaaccaagg tatcatcttt taagataaga
     1261 ttatcatcat ttaaagttgc taaaatttta gcaacagtcg cataatgcaa agggcttgta
     1321 aataaagtga taaaatcata ctgatttaag agattttcaa gcaaaaaggg taaatcttta
     1381 tcggttttat tttgtatgcg aatttcgttg atttctttaa atttttcttc ataagttcta
     1441 taaatataat ttttgaattt ttcgtttata gtaagctcat ctcctataag ataaagcaaa
     1501 tgtttcataa attttccttt ttttcttata attatagcca aaaacaaagt agaaattaaa
     1561 gctaatttga gtagaattta agattattaa aaattaggtg gaaaaaatgg actacaaaga
     1621 aactctactt ttgcccagca ctacttttgc tatgcgggcg aatttagcgg aacttgaacc
     1681 gcaaagattt aaaaaatggt ttgagcaaaa ttatgcttat gaaaaaatga aagaaaatcg
     1741 caaaaatgcg aaaaaaagtt ttaccttaca cgatggcccc ccttatgcta acggacatat
     1801 ccatatagga catgctttaa ataaaatttt aaaagaaact attatcaaaa cgcattattt
     1861 taaaggtgaa agtgtgcgtt ttactccagg gtgggattgt catggtttac ctatagaaca
     1921 acaagtagaa gtaaagcttg gagaaaagaa aaaaagctta agcaagaaag aaattcgtga
     1981 gttttgcaga caacatgcga gtgaatttgt agatatccaa agagaagaat ttaaaaattt
     2041 aggcattatt gcggattggg ataagcctta tttgactatg aaatttgagt ttgaagcagc
     2101 gatttataga actttatgcg agattgctaa aaaaggctta ctttgtgagc gttctaaacc
     2161 tgttttttgg agttgggcgg caaagtcagc tttagcggaa gctgaagtag agtatcaaga
     2221 taaagaagat tattctatct ttgtggcttt tgatttagat gtaaaagctt gcgaaaaatt
     2281 aggcgtttca aaagcaagcg cagtgatatg gacaactacg ccttggactt tggtggctaa
     2341 tcaagctata gctttaaatc ctaatgaaaa ttatgtgatc actaaagaag gtttgatttt
     2401 tgcaagtgct ttacttaaaa gtatggtaga aaaaggactt acaagtggag aaattcaaaa
     2461 agaactcaac gcaaaagaat ttgaaaaact tgaagctatc aatcctttaa atggaagaaa
     2521 atctgtttta atcatgggtg agcatgtatt gatggatggt ggaagtgggc ttgtgcatac
     2581 tgcaccagga catggcgaag atgattacta tgcttgtttg aaatacggta ttgaagtttt
     2641 aatgcctgtt gatgatggtg gatgttatga tgaaacttta agagctaaag agcttttgcc
     2701 ttctcatttg cttgaagagt ttataggtct tcatattttt aaggccaatg aaaaaatttt
     2761 agaactttta ggcgaaaaac ttttacattc ttctaaattt atacactctt atccattttg
     2821 ttggagaacg cataagcctg tgatttatag agctactaaa caatggttta ttttaatgga
     2881 tgagccaaaa cttcaaggaa aaactttaag agagtgtgca aaagaacaac ttttaaaaac
     2941 aaccttttat ccgcaaagtg gggtaaaaag aataggttct atggtggaaa atcgcccaga
     3001 ttggtgtatt tcaagacaaa gggactgggg aacgcctata gcctttttta gagataaaaa
     3061 cactaaagaa gtcatttttg atgatgagct ttttgacttt gtagcggcta tttttgaaaa
     3121 acacggcgct gatgcgtggt gggagtttga aatcaaagat ttaattccta caaattcaaa
     3181 atacaaagct gaaaatttag aaaaagtata tgatatctta gatgtttggt ttgatagcgg
     3241 aagtactttt aatgcagttt taaatagcgg actttatgac gcaggagaaa aaagagcaag
     3301 tatgtattta gaaggaagcg atcagcatcg tggttggttt caaagctctt tgcttgtagg
     3361 tacagcgatc aatgaaagcg caccttatga aagcatttta actcatggtt ttaccaccga
     3421 tgaaaaaggg caaaaaatgt ctaaatctaa aggcaatgtg atcgctcctg aatatgtagc
     3481 aaaaacctat ggagttgaaa ttttaagact ttggatactt ttaagtgatt attcaagtga
     3541 tttaaaaatt tcagacaata tcttaaaaca agtgggtgaa caataccgca aaataagaaa
     3601 cactataaga tttttacttg ctaataccaa tgatttaaaa gatttagaag ttaaagaatt
     3661 tagttttatt gataaatgga tattaagtcg tgcaaccaaa gtttttaaag caagtaaaga
     3721 ggcatttttt gcttatgaat ttgctaaagg ttttagtttg cttttaaatt ttttaagtgc
     3781 ggatttaagt gggatttatc ttgatatcag taaagatagg ctttattgcg atagtgaaaa
     3841 tgcccaaaga agaaaatccg ctcaagtggc tatggctttg atagcaaaag agcttttaaa
     3901 tttacttgct ccaaatttaa gctatagtgt agatgaggct ttagaacatg ctaatgtttt
     3961 aatcaaaggc gatgcaaaag atgtatttga tctaagttta actcaggatt ttgattatga
     4021 ttttggtata gatgatacat ttttaatgag tgctagagag aaattttttg aacagattga
     4081 tatacttaaa aaagataaaa tcattaaatc tactttggaa ttaaatttaa acatcagttt
     4141 taataaattc ccaaatgagg aattagccga ttggtttatg gtaagtcaaa tcagcaatga
     4201 aaatgaagaa attttggctg aatttgaagt agagaatgag aaatttaaaa tcaccaaagc
     4261 ttcactttgc aaatgcccaa gatgttggaa acttcaaagt aaagatgaag aaacaccttg
     4321 tttaagatgt gaagaagttt taaaagggat tcaatgctag aaaatcctat tccaaatagc
     4381 attatcatca caactatagc ggtggttttg gcttttagtg ctttagcagt atttttgatc
     4441 aaaaaaacaa aggaaaataa atgataactt taaaagaagc tttaaaatac tccaaagaag
     4501 aacttgaaaa tttaaaaaaa gaactcaatg aaaaagcaaa aaaagaaaaa aaaataggtg
     4561 cttatatcga acaattttta gataaagact taagtgtttc aggtgaaggt gtgcctgtag
     4621 ctataaaaga taatatcagc gtaaagggct gggagcttac tagtgcgagt aagattttac
     4681 aaggttatat cgctccttat gatgcaagtg tgattgttaa tttaaaagct aatggttttt
     4741 ctccttttgg gcgttgcaat atggatgaat ttgctatggg aagttcaaca gcgagttctt
     4801 attatggcaa aactttaaat cctttaaatt ttgagcgtgt gccaggtggt tcaagtggtg
     4861 gaagtgctgc tgcggtagcg ggtggcttgg ctttggcaag tttgggttct gatacaggag
     4921 gatctgtacg tcagcctgca gctttttgtg gttgcgtagg atttaaaccg agttatggaa
     4981 gagtgagtcg ctatggctta gcttcttatt cttcaagttt ggatcaaatt ggggttttaa
     5041 cgcaaaatgt agaagatgcg gcaattttat atgatgcgat cgcaggatat gataaaatgg
     5101 atagcacgag tgcaaatatc gagtttatta aaaccgctcc aaatttaaat gcaaataaaa
     5161 aattaaaaat tgcagtgatt gaaaattatg tcaatgatgc agatagtgaa gtaaaaaacg
     5221 cacttttaaa aaccatagat atgttaaaag ctaatggaca tgagattgta tataaaaatt
     5281 tgcttgattc taagtttgat atcgcagcgt attatatcat cgcaacagct gaagcaagtg
     5341 caaatttaag tcgttatgat ggggtgcgtt atggcaagcg ttctgaaaat atccaaaatt
     5401 taaaagaaat gtatgtaaat acacgcagcg aaggttttgg agaagaagta aaaagaagaa
     5461 ttttgttagg aacttttgtt ttaagcagtg gatattatga tgcgtattat attaaagcac
     5521 aaaaagctag agcttttatt aaggcaaaat atgaagaaat tttgcaagat tgtgatctta
     5581 tttttatgcc tgtaacgcct acaacggctt ttaaatttga tactcaaaaa agccctatgc
     5641 aaacttattt agaagatgtt tatactatct ctgtaaattt agcaggactt ggaggcatta
     5701 gtgtgcctgt tgcaaaagat aaagaagagc ttaatatatc agcacaactg atttgcaaag
     5761 cttatgatga acaaaccttg ttagatgggg ctttaagttt agaacaaatg attaaacatt
     5821 aaggatgaaa gatgaaaatt gtaaaaagag ctttaacttt tgaagatgta ttattgcgtc
     5881 ctgggtattc tgaagtttta cctaaggaag taaaaattca cactaaatta acaaaaaata
     5941 tcactttaaa tatgccttta atctctgcgg ctatggatac agttactgaa cacagggctg
     6001 ctattatgat ggcaagactt ggagggcttg gagtgattca taaaaacatg gatatagcct
     6061 cacaggttag agaagtaaaa agagtgaaaa aaagcgaaag cggggtgatt atcgatccta
     6121 tttttgtaag tcctaaggca agtgttgcgg aagctttaga aattatggca gagtatagaa
     6181 tttcaggtgt tcctgtagta gatgaagata agaaactaat aggcatactt accaatcgtg
     6241 atttaagatt tgagagtgat ttttcaaatt tggttgaaaa tgttatgact aaaatgcctt
     6301 taattactgc tccaaagggt tgtactttag atgatgcgga aaaaattttc agcaccaaca
     6361 aagtagaaaa acttcctata gttgatgaac aaggacgctt ggaaggactt atcactataa
     6421 aagatcttaa aaaacgcaaa gaatatcctg atgccaataa agataatttt ggaagattac
     6481 gcgtgggtgc ggctatagga gtagggcaaa tggatcgtgt gaatgcttta gttgaagcag
     6541 gcgttgatgt tgttgtgctt gattctgcgc atgggcattc caagggtatt attgatacag
     6601 taaaagcaat taaggctaaa tatccaaatt tagatcttat cgcaggaaat atcgccactg
     6661 cagctgcagc aaaagcactt tgtgaagcag gagtagatgc ggttaaagta ggtattgggc
     6721 caggaagtat ttgtactaca cgtattgttt caggtgtggg cgtgcctcaa atttcagcca
     6781 ttgatgagtg cgtggaagaa gcaaataaat ttggcgttcc tgtgatagct gatggcggga
     6841 ttaaatattc aggtgatatc gcaaaagctt tagctgtagg tgcgagttct gttatgatag
     6901 gatcgctttt agctggaacg gatgagagtc caggagagct ttttacttat caaggaagac
     6961 aatataagtc ttatcgtggt atgggctcac ttggggctat gcaaaaggga agttcggata
     7021 gatattttca gcaaggtact gctcaagata aactcgttcc tgaaggtata gaagggcgtg
     7081 ttccttatgt gggaagtata agaagcgtgg tgcaccaact tttaggaggt ttgcgttctt
     7141 ctatgggtta tgttggggct aaagatatag aagattttca aaaaagagct gaatttgttg
     7201 aaattactac cgcagggctt aaagaaagtc atgtacatga tgttactatc actcatgaag
     7261 caccaaatta caaggtcaat catcaatgag ttttgaagaa aatttaaaac acgctaatga
     7321 atctttggaa aaattaaaca atcaagagct tgccttagat gaaagtgtaa aaatttacaa
     7381 agagggttta gaaagtatca aaaaagcaag acttgagctt gaaaaagcaa aattagaagt
     7441 ggagcaaatc gatgagtaaa atagcggctt tacagtttcc aactttagct ttaagtgaat
     7501 caaggcttga ttattatctt aaagcttcaa aagacaatgg agcaaatttg gtagttttgg
     7561 gcgaatatgt gatcaatagt ttttttacag aacttttgca tatgccaaaa aatatgataa
     7621 aagagcaaag tgaagctaaa aaagaaagct tgattaaact tgctaaaaaa tacgaattag
     7681 aaatcatcgc tccttatgta agcgttgaag ctaaaagtta taaaaaactt tgcttaaaag
     7741 ttactccaaa tggtgttaaa agttatgaac agcaaatttt aatgccttat gaacattgga
     7801 atgaagaaaa atttttcagc aacaaaactt catcagagtt aaaaattttt acttttaatt
     7861 atgaaaaatt aaaatgtgct ttactttttg gttttgaggc gcattttgat attttttggc
     7921 agcagattat gacgaaaaaa attgatttgg ttatcgttcc tagtgcttgt acctttgaaa
     7981 gtaaacaaag atgggaagaa cttttaaaaa caagagcttt tttaaattct acaagcattt
     8041 taagagtaaa tcgcataggc aaaacaaaag atgagtggaa tttttacggc gatactttgt
     8101 ttatcaatgc ttttggcgag atagaaagta aattaggttc tgaagaagaa atgcttatca
     8161 tagagcctaa aaaaagtgat gaagcaagaa aactttgggg ttttgaaaag ataataaaag
     8221 aatttaaaaa ttaaatttat acttatagat ttataagttt ataaaagtta tctagagctg
     8281 atagaagcta aggtttatat tttcttttta gtaaaaaagt gctaaaattt agcctttaaa
     8341 gtataaaggt ttaaatcatg caaaatatcc attttatcgg cataggcggt ataggaattt
     8401 ccgctttagc aagattttta aaagaaaaag gttttaagat tagcggaagt gatcttaaag
     8461 agagcaaaat cactaaagaa ctagaaaaag aaggggttaa agtaagcatc cctcatcata
     8521 aagacaatat tttaaacaaa gatttagtta tttattctgc tgctatcaaa gaagaaaatc
     8581 ctgaatttaa acatgctaaa gaattaggca ttaaatgcct ttcacgcaag gaagccttac
     8641 ctcttatttt agaagataag cgtgtttttg cagttgcagg agcacatgga aaaagcacga
     8701 cttcaagtat tttagcttct ttgcttgatg atgcttctgt gatcatcgga gcgattttaa
     8761 aagaatttgg ttcaaatatg atttataaag aaagtcaaaa ccttgttttt gaagctgatg
     8821 agagcgatag ttctttttta aattcaaatc cttatttggc tatagttacc aatgcggaag
     8881 cagagcattt agatcattat ggcaatgaag tttcaaaact ccatcatgct tatacgcagt
     8941 ttttagatgt ggctaaaatt cgcgtgatta atgctgaaga tgagtttttg aaaaattata
     9001 aaaatgagtc aatcaagctt tatccaagca aagatattaa aaactgcacc atgtgtatag
     9061 aaaatttcaa accttttacg agttttgagt taaaagattt aggtgagttt aaagtttttg
     9121 gtatgggata tcatttagct cttgatgcgt ctttggcgat tttggcggct ctaaattttt
     9181 tagatataga aacgataaga actaggctta aaaattatca aggtattaaa aagcgttttg
     9241 atattttaca tgctgatgaa aatttggttt taatcgatga ttatggtcat catcctactg
     9301 aaataaaagc gactttaagc gcagcacaag aatacgcaaa attaggcgga tataaaaaaa
     9361 tcacagccat ttttgaaccc caccgctaca cgcgtttggc tgcaaattta aaggaatttg
     9421 caaaggcttt tgaaggtgtt gatgagcttg taattttacc tgtttatgct gcaggagaag
     9481 agcctataga acttgattta aaagcggttt ttcctaaggc tttatttgtg gaagatatta
     9541 aaagagaggg taaatttttg gtagcttcta agggacaggt ttttgaagaa gggcttatta
     9601 taggttttgg tgcaggagat atcagtaata aattaaggca aaagaatgag taggtttttt
     9661 ttatatcttt taatcatctt aattttagcc ttaattactt ttgttttgcg tgaaaaattg
     9721 ggcaaaaaaa ccaaaccttt ttttggtgtt ttgcttgtga tttttattgt tttagcagta
     9781 ttttttgaat ttgaaaatac gcaaaaaagt catttaagaa cagatattat cgtagctttt
     9841 aatcaaaata aaaatatttt atgtaaagat atcaatgttt ctaaggcgta ttttaattat
     9901 gaatttggta caggaagttt tatttcaaag gataataatc aaagttttaa ttctttaatt
     9961 atagatatta aagattgtag gttaaatgat gaatgataca aaagaagaat tgatctcaaa
    10021 gcttgattta aacagctatt tagaagagtt taaagccctt tttgcaagag ataaagagat
    10081 ttttttgcaa ggagattcta atcttcattt taaacgcata catgagcttt gtgaggtgga
    10141 atttcctact atgccagagc ttagcaatct tgataaagcc ttagttcatt taagcaagca
    10201 aggaattttg catttagatg aaatttttga atttgtaaaa atttttcgtt attttgaaaa
    10261 gttaaaaaaa ataaaactag gaacaaattt agactcttgg ttgcaaaaga tagaatttgc
    10321 tagtggggct ttggagcttt gtttgaattt cgatgaaaaa ggggagttaa aagaaagttt
    10381 agatgaaaga cttgtaaatc ttaatactgc tttaagatta aaaaatgaaa gcataatagc
    10441 tgagtttaag aaattttgct atacaaaagc tttaatgcct tatcttatcg atacacaaat
    10501 ccatcttata aacaatcttg aagccttgct tgtaagaggc gggtttaatc acgctattaa
    10561 agcaaaaatc ataggcagaa gtagtggcgg tggcttttat atcgtgcctt taagtgttga
    10621 gaatttgcaa aatgatatag aaaaaatcaa aaatcaaaaa gaagaaattt attatgaata
    10681 cgctaaaaat ttctcagctt ttttagcaaa aaatctacct tttttaaaat ttatcaatac
    10741 agcctttgat ctttttgatc attatagtgc tagggttttg tttgctaaaa aaagggattt
    10801 tgaatttgtt ttgtgtgatc aaagtacgga tttggttctt aaaaatttcg cccatcctgc
    10861 tttaaaaaat ccaaaaagcg tgagtttgga atttaaaaaa caagttttaa ttatcacagg
    10921 ggtaaatgca ggcggaaaat ccatgctttt aaaatccatg ttaagcgcag catttttagc
    10981 taaacatctt ttgcctatgc atataaaagc aagtgaaagt aaaatcggta cttttaaaga
    11041 atttgatgcc atcatagaag atccgcaaaa tgttaaaaac gacatttcaa cttttgcagg
    11101 aagaatgttg catttttcta gacttttttc taagaaaaat ttgcttttag gtatcgatga
    11161 aatagagctt ggaacagatt ttgaagaagc ggcttgtttg tatagtgtgt taatttcaaa
    11221 actcatagct aataatctta aaatcatcat caccacgcac cacaaacgcc ttgctatgct
    11281 tttagcaaag aatgagcaag ttgaactcat tgctgcttta tataatgaag agctttcacg
    11341 cccaaaatat gagtttttaa aaggtactat aggaaaatct tatgcctttg aaaccgcttt
    11401 gcgttatcag attccgccga atttagttag cgaggctaaa aagctttatg gcgaggataa
    11461 agaaaattta gaagagcttg tgggtaaaaa tatcaatctt gaattagaac taaaagctaa
    11521 gcttgaaaat gttgagaaaa aagagcaaaa agtcgatgaa attttacttt ctttaaaaga
    11581 tcaaaaagaa aaaaatgaac aagaatttcg cacgagtttg agaaatttag aatttaaatt
    11641 tcacaaagcc atagaagaag ctaagaaaac catacagctt aaagacacaa aagataagca
    11701 aagaagcctt aataaagcca atgaacttaa aaaagaaatc atcttgccaa gtatggagca
    11761 aaacgaagaa ttgcgtgtgg gggattttgt aaaatatgaa aaaattaagg gtaaaatcat
    11821 aagcatttct aaaaacgatg ctatggttga aagcgatggg atcaaacttc gtgtgccttt
    11881 aaaactgctt aaaaaaagtg gcgcaatgcc aaaaaaagta gcaaaaacaa gtataagcat
    11941 aagcaaacca agcaatctaa gtgtaacttt ggatttgcac gggcttagga gtgatgaagc
    12001 tatttcaagg cttgataaat ttatttcaga tgctttgctt gcaggctttg atgaagtttt
    12061 agtttaccat ggtataggaa caggaaagct tgcctttgct gtaagagagt ttttgaaaac
    12121 tcataaaagt gtcaagggct ttaatgacgc accgatcaat caaggtggct ttggtgctaa
    12181 ggtggtgaga ttataaggaa ataaatgatt acaaaagata atttaaaaca agttctagaa
    12241 aacttaggct ttaaaaataa aaatgaaaat tatgtaaaaa caatcaataa ttacacactt
    12301 ttaatagatt ataaaaacca aagtattaat tacccaaaag aaataaaaat tcacgataaa
    12361 actacttcta atttttcaca ccctgaaaat tttgtagttt ttgaatgtgt gcatagactt
    12421 ttagaaaaag gttataaggc tgaacattta gagttagagc caaaatggaa tcttggcagg
    12481 gataaaaaag gtggtaaggc tgatatttta gtaaaggata atgaaaacaa tccttatttg
    12541 attatagaat gtaaaaccac agattctaaa aatagtgaat ttataaaaga atggaataga
    12601 atgcaagaag atggcgggca gcttttttct tattttcagc aagaaaaagg tgtaaaatat
    12661 ctttgtcttt atacaagtga ttttagcgat aagttagaat ataaaaatta catcatacaa
    12721 gcttacgata acgaagaata tctaaaagaa aaggaattac aaaattctta taaaaaatct
    12781 aataacaata tagaactttt taaaacttgg aaagaaagtt atgaactgca atattttaaa
    12841 caaggtattt ttgaagcaaa tgtcaatgct tataaaattt tagaaattac tccaactttt
    12901 gataatctta aggaacttaa agaagaaggt aaatatcacg aatttgcaaa aattttacgc
    12961 aagcataata tatcaggcaa ggaaaatgcc tttgataaac ttgtaaatat ttttctttgt
    13021 aaaatctatg atgaaacttt taataaaaac aatctcaaat ttggatattt tggtgtaatg
    13081 gcagatactt atgcaaatat gcaagataga ttaatgtggc tttataaaga agctatgaaa
    13141 gaatttttag gagaaaaaat tacctttgta tctaatgaag atatagaaaa agactttaag
    13201 caattaaaga taaaaacttt aaaagaagta atgcaaaatt acatcaaaga attaaaattt
    13261 tattcaaata atgattttgc atttttagaa gtgcataata aagaattatt cttaaaaaat
    13321 gcacttgtat taaaagaaat agtagagctt tttgcaaatt acaagcttac tcaaaactct
    13381 acaaatcaat ttttaggcaa tctttttgaa ctttttttac aaaaaggtat gaagcaagat
    13441 gaagggcagt tttttacccc tattcaaatt tgtgaattta ttatgtattc tttaccgctt
    13501 caagaaatgt taagcaaaag ctctaaagct ttaagggtga ttgattatgc ttgtggtgct
    13561 ggacattttt taaacaccta tgccaatgag cttaagcgtt atctaacaga agatgagctt
    13621 aaagagcatt ataaaaatat ttatggtatt gaaaaagagt atcgcttaag taaggtttct
    13681 aaggtatcaa gtgcaatgta tgggcaaaat gaaatcaata ttttatatgc tgatgcactt
    13741 gcttcttttg aattagcaaa tacaaataat ttagaaggag aaaaagcaaa accacaaata
    13801 gaatcaaata gttttgattt gcttatagca aatccgcctt attctgtaaa aggattttta
    13861 gaaactttaa gtgataaatc taagaatacc tataaacttt ttaacgatga tataaacata
    13921 gaaacaaata attctatcga atgctttttt tgcgagcgag caaatcaaat tttaaatgat
    13981 aatgctaaag ctgccattat tttgccaagt tctattttaa ataaggattc tatttataaa
    14041 aatacaagag aaatattgtt tcaaaatttt gattttattg ccattgtaga gctaggtaat
    14101 caaacatttg gagcaacagg gacaaatacg attattttat ttttacgcaa aaaagaaact
    14161 tttaaacaag aaaatcatct tatttctcaa gattatagtt tg
//
LOCUS       DAEDTT010000039        13883 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.039, whole genome shotgun sequence.
ACCESSION   DAEDTT010000039 DAEDTT010000000
VERSION     DAEDTT010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13883
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.039"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..483)
                     /locus_tag="KLC54_000836"
     CDS             complement(<1..483)
                     /locus_tag="KLC54_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HBD9177224.1"
                     /translation="MTILEKNIQALLSGVNEPLGNKLLNFIQNKTCSRFNIDENLNIY
                     DKTHNVFMYENLEEELNFFYQSILEKTPRYPFICIYGIGNALLIKNLAKHYKHLFVFE
                     SEIELFILALSTIDLSEELCSGKIYLVDIQEKKINLQLRILFDQNDVFLWLNLYEMFI
                     N"
     gene            complement(493..1739)
                     /locus_tag="KLC54_000837"
                     /pseudo
     CDS             complement(493..1739)
                     /locus_tag="KLC54_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
     gene            complement(1739..2254)
                     /locus_tag="KLC54_000838"
     CDS             complement(1739..2254)
                     /locus_tag="KLC54_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HBD9177225.1"
                     /translation="MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNL
                     KTLINDISIYTLKNDHLSSIKTMSNVIGVENVDLGNFNGTKEVNFGVGNDKECLKLVF
                     INKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            complement(2255..3262)
                     /gene="tsaD"
                     /locus_tag="KLC54_000839"
     CDS             complement(2255..3262)
                     /gene="tsaD"
                     /locus_tag="KLC54_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HBD9177226.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKILKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDANLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNIPLKHSKELAYSFSGLKNAVRL
                     EILKHENLSDEIKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLHLRS
                     RLQNLCQKYNANLKLAPLKFCSDNALMIARAAVDAYKKKEFVSIEEDILSPKNKNFSR
                     I"
     gene            complement(3259..4653)
                     /locus_tag="KLC54_000840"
     CDS             complement(3259..4653)
                     /locus_tag="KLC54_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HBD9177227.1"
                     /translation="MKFFLTILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPKGVDKAINRELEVKLFNDR
                     ILLSLKNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHGKDESGILV
                     HKKNMQTQYSLDMAGKIYRVEFYELRGANLQQLLEANTNSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            complement(4655..5725)
                     /locus_tag="KLC54_000841"
     CDS             complement(4655..5725)
                     /locus_tag="KLC54_000841"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HBD9177228.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIPISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLFNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGVKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     RYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAVDFSKMPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            complement(5722..6447)
                     /locus_tag="KLC54_000842"
     CDS             complement(5722..6447)
                     /locus_tag="KLC54_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HBD9177229.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVIGYLVYKKASLKSALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLICASVIGTILGVFVYSFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVALL"
     gene            complement(6456..6794)
                     /locus_tag="KLC54_000843"
     CDS             complement(6456..6794)
                     /locus_tag="KLC54_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177230.1"
                     /translation="MPVSPLGNVNYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            complement(6796..8103)
                     /locus_tag="KLC54_000844"
     CDS             complement(6796..8103)
                     /locus_tag="KLC54_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HBD9177231.1"
                     /translation="MKYTELLQLQTFFSQFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDEKDLIIEALRHIDKSYRVVKPNVILEPLKPYKMDENFEE
                     IKDFKDYFSCKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFKLEFSPKQSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDHKQEDLVANFYY
                     NEFKICVGKNEKGNEFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARL
                     CVSFSKLKKDSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            8165..8740
                     /locus_tag="KLC54_000845"
     CDS             8165..8740
                     /locus_tag="KLC54_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HBD9177232.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVEKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     ENELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFEDEDAFLNLNFYEEYEKFKSELR"
     gene            8737..9726
                     /locus_tag="KLC54_000846"
     CDS             8737..9726
                     /locus_tag="KLC54_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HBD9177233.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALEYEKQGDYKKAMEIYKKLALK
                     NSSVLISQEQNNSSQATQTQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPLAYSFNSLGTNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDFPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPESKKDDDNPAILHYMGNFDVNLGYLGDDYFINLMLRNNLK
                     FHDNKGAIQVDLGYDIFNNGIYWYLQYFNGHGESLIDYNKHLQRLSTGFLISY"
     gene            9812..10780
                     /locus_tag="KLC54_000847"
     CDS             9812..10780
                     /locus_tag="KLC54_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD9177234.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FAGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDVALNL
                     GISYNGILFLGLMIVSIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKVYA"
     gene            10773..11711
                     /locus_tag="KLC54_000848"
     CDS             10773..11711
                     /locus_tag="KLC54_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HBD9177235.1"
                     /translation="MRKKMLILSFLTLGMIGIFILVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDILILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVANITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISVVINFLGGIYFIYLVLKGNKL"
     gene            11708..12463
                     /locus_tag="KLC54_000849"
     CDS             11708..12463
                     /locus_tag="KLC54_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9177236.1"
                     /translation="MIKLKNITKFYDNKAIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMKLKDYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNANDKIKINEALEYMGLSNLRNEFLDTLSGGQKQRAFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQIDGKKICIYF"
     gene            12476..13468
                     /gene="ceuB"
                     /locus_tag="KLC54_000850"
     CDS             12476..13468
                     /gene="ceuB"
                     /locus_tag="KLC54_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HBD9177237.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTTKTNTATMKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVAGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVIDRNIIVGNK
                     ERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            13624..13845
                     /locus_tag="KLC54_000851"
     CDS             13624..13845
                     /locus_tag="KLC54_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177238.1"
                     /translation="MSLEFSKETQHFLTNYCKDNNLSEKEVLELALSYLEHKIRIDGY
                     KKDIELYKQDKLKTLDFDETFNDIRKDLE"
BASE COUNT         4757 a         2206 c         1908 g         5012 t
ORIGIN      
        1 attaataaac atttcataaa gatttaacca taaaaataca tcattttggt caaaaagtat
       61 tctaagttgt aaatttattt ttttctcttg aatatccaca agataaattt ttccactaca
      121 aagctcttca ctcaaatcta tcgtacttaa agctaggata aaaagttcta tttcgctttc
      181 aaatacaaaa agatgtttat agtgtttagc taaattttta atcagtaaag cattgcctat
      241 accataaata catataaaag gatatctagg agttttttct aaaatacttt gatagaaaaa
      301 atttaattct tcttctaaat tttcatacat aaaaacatta tgagttttat catagatatt
      361 taaattttca tctatattaa aacgagaaca agttttattt tgtatgaaat ttaaaagttt
      421 atttcctaag ggttcattta ctccacttaa taaagcttgt atgttttttt ctagtatagt
      481 cattgggttt ccttaaattt tatctatttt tagcgatatt ttgtcatctt tttcgctaaa
      541 ttgatacaac aaatcctcac aaggataaga gatacatttt tctttacaat ctttttttga
      601 attttgtttt attttttcta gcattaaagg aagttctttc ttaatcaaaa gttttaccgg
      661 aattcccatg ccgtgattta agtttttaat aaattttcca tcaacttgag attctttagt
      721 aatagaatgc aaagttacat caaaaccaag tttctcaagc tcttcataaa gcatagtttt
      781 ttcttttaaa gaaacatact catcatataa tgaatgataa cttataaagc aagtttttaa
      841 acattttgat tgttctaaaa gatgatcttc ctctaaaaga tttcgaattt ttcttcttgc
      901 gggagaaaaa aaacgaggtg atgaagaatt acttgtccaa aaagtttttg tcgaacaatg
      961 tgttttaata tgatgaaaaa aatcaaaagt agcaaattcg ctatactgca taaaatctat
     1021 ttcctttcca aaacctacaa ctctccataa aaacttagca ccactagaat tatctattac
     1081 tccatctacc aaccaaggtg caatcttagc tgtcaaatgt gccaaatatc ccccatgaga
     1141 accccctatc atgataactg gtataccccc cccatagtat caaaaggagt atttttctta
     1201 agataaagtg caacatttaa aagatcttga gcttgcatga ttccaaaatt ttgatactca
     1261 ttttttgcag gttgcaaact cacatgtaaa tttaaaaaat aatttggcat aaaattacct
     1321 ttttgcttgc cttcaactat ttgattattt acaaaatgaa aaatttcact catttgttta
     1381 taatcttgaa ttttatcaac atcataagga agtttaatat ccacagcttc acaacttgct
     1441 tttaaaataa gcttgtctat atcatctaaa taaaaagttg atccagtttg aggacgattg
     1501 ccaatacagt gataattcac tccaacaaaa gctaaattaa aatttttaag caaatactct
     1561 acgataaatt ttaaatatat atcattacaa tccgcaccca ctccttgcac cacaaacacc
     1621 aaggcttcag gtgttttttc atcatcatac caaagcttaa attcaagctt tgattctctt
     1681 tttataccaa gttctacatc atcgcaagag tcaatctcat aagttttact cactatcatt
     1741 acattccccc tattaaaaga taagttttac tcgctaggtt tttaaaattt tcattcttgc
     1801 ttaaaatcac acaagcttta ttactagaag agcttgtaaa gtctatattt tctaaatctt
     1861 catggctttg attggctgcg ttgatgatag catttttgct tgcttcattg cttgaaattc
     1921 ccatgagtat aaaatcagcc ttatttataa aaacaagttt taagcattct ttatcattgc
     1981 ctacgccaaa atttacttct tttgtgccgt taaaattgcc aagatcaaca ttttcaaccc
     2041 cgattacatt actcatcgtt tttatagagc ttaaatgatc attttttaaa gtataaatgc
     2101 ttatatcatt gatcaaagtt ttaaggttgt ttaaagactt gctaacttca gcttcatcct
     2161 tgcttgaact catttttggt aaagcaatag cggctaaaat tcctaagata acaattacaa
     2221 aaacaagttc taatatagta aaagcttttc tcatctatat ccttgaaaaa tttttatttt
     2281 tagggcttaa aatatcttct tctatactta caaattcctt ttttttataa gcatcaactg
     2341 cagctcttgc tatcatcaaa gcattatcgg agcagaattt taaaggagct agttttaaat
     2401 ttgcattata tttttgacat aaattttgca aacgcgaacg caagtgaagg tttgcactag
     2461 ctccgcctac aacgccaaaa tttttaaact tataaagatt aaaaattttt tctaatttat
     2521 ccatgatatg atcacaagct gtattttcaa aggcataagc tatttcagct tttatctcat
     2581 cgcttaaatt ttcatgcttt aaaatttcta aacgcactgc atttttaagt cctgaaaaac
     2641 tataagcgag ttctttagaa tgctttaaag gtatgttaaa agagatattt ttaagtttgg
     2701 cattttttgc taaattttct atgatgaccc caccaggata acctaaattc atcattttgg
     2761 ctactttatc aaaactttct ccaaaactat catcatttgt gcttgctaaa agctctaagt
     2821 ttgcatcatc tttaagataa agcaccatag tatgcccgcc actaacaagc aaaattccca
     2881 tatctaaaga aattttttct tctaaaaaaa gactataaat atgaccttta agatggttta
     2941 tagggattaa gggtaaattt agagcacttg ctaaggtttt tgccatggaa attccactga
     3001 gcaaagaaac gctaagccca ggttcatttg tcacagctat agcacaaaga tttttaaaat
     3061 gctctttgca ttgcttaagt atctttggta aagcctcgct atgaagtctt gcagcaagtt
     3121 caggcaccac tcccccatag atactatgat ctaattcttg ggaaattttt ttatgaaatt
     3181 tacactctaa ggtgttttta tcaatgatag ctatagaact atcatcacaa gaactttcta
     3241 tagctaggat aagatttttc attcaaattc cactaaaata gaacctaaga atttatcttt
     3301 tgatcttgcc attttaagag tgtttaaatc caaattttta gcatttttga tcaacttgct
     3361 attggtattt gcttctaaaa gttgttgcaa attcgcccct cttaactcat aaaattccac
     3421 tctataaatt ttacctgcca tatctaaaga gtattgtgtt tgcatatttt ttttatgaac
     3481 taaaatacca ctttcatctt ttccatgatc aaaacctatg atatttacgc gcacattagc
     3541 tatctttgga ataagaaaat tctcttttac tttcaccttg gttccaaaag gaacggtggt
     3601 ttcattgcca tcaacttgaa aagttacctc attaaaagca tcactaaatt ctaaatactc
     3661 aggatataat cttgtttgaa aacgattgcc atactggata taaaaagaat ttccttctgc
     3721 gataacagcg gtaagttcat tgcttgtatt ataatttaac tctttattta ccggaaaagg
     3781 cacatagttg ataacctttc ttggattttt taaagaaagt aaaattctat cattaaaaag
     3841 cttcacttca agctctcggt ttatggcttt atcaacccct tttggagtga gttcgaaatc
     3901 tctgctaaat tcaattcctg cggtttttaa ataattttca attgccaaaa gatgataata
     3961 agctcttaaa tttacaggca gatttttact cgcttcattt gcaaaagcag ctttgtgatt
     4021 tgaaatcaca aaataagtta aagctttaag catttccgta tcgccaagct cttgggtttt
     4081 ggtgttttta agatgataag catgctttgg gtcagcaagt gaagaattga cactatttac
     4141 ggtttgagta gcgatatttt caagatcagg gtatttgctt gcattgattt cgcttgtgtc
     4201 aatcacgctt gaatttcccc aacgcttagg attttgcatc gcatcgatat aagtgggttt
     4261 ataaaaaccc caaccatcgt gaagattgat caccatacta acttcaggaa gtaaaataag
     4321 ctctttaatg cgttgaacgg ttttataatc aggatctttt gggctaatgc ttgcaaattt
     4381 acggtttaaa tccccattat tcccacgaga acgcttgata atgctatcaa aagctaaatt
     4441 tggagccact ataatcttac ccttagtgat attataatca ctcaaaagta aacttgctgc
     4501 atgaaatcca ccaggctcat cgccttgaat tccaccaaaa attaaaactg tattattatc
     4561 atctagactt tttccatttt ctcctacgct aaagtctagc tctaaagcaa aaatgcttgt
     4621 tataaaaaat aaaattgtta aaaaaaattt cattttaact ccttaaatac tctcttgttt
     4681 taaaatcata ctcaaaaact tcttctatgc ttgaaatttt aggtactcca aaatgatcaa
     4741 gggctttaaa aatgcattta gcaatatcta aaaatccact tttattttct aaaaaattat
     4801 aaacaccaac ttcattagca gcattgatga taacacctaa atttggctct tttaaaaatg
     4861 tatttttaag cttaaaaata ggatattttt ttgtgctgat tggatgaaat tttaaagcag
     4921 gcattttgct aaaatcaaca gcctctaaaa taggcgtatc ttgtttttca aatatagcat
     4981 ctgaaatagc taatttcata tctgcttttg aaaaatacgc cgtgctagct ccatttttaa
     5041 attcacacat tgcatgcact aaagatcttg gttctattaa agcatcaatt tctttaaaat
     5101 catataaatg ataagcctct ataatctcaa aaagcttatt tgccatagtc gcactatcta
     5161 tagtgatctt tgcccccatg ttccaattag gatgttttaa agcatctttg acactgactt
     5221 gatttaaatc tttgatttta tacctataaa aagctccgcc acttgctgtg atataaagtt
     5281 ttgctatatt ttttttacct tcgagtaaaa attttaaagc cgcatgctca ctatcaacgg
     5341 gtaaaaattt aacccctttt aaaaaactcc ccgctaccac aagactttct ttgttagcta
     5401 aggctatgtt tttgccaagt tctttagcct ttaaagtgct tttaagtcct gcaaaaccta
     5461 caatagcatt gaataaaagc ttgtcttgac actctgttaa aatttgctct aaaccttctt
     5521 gtcctataaa aactctatcg tgtttaacta aatgcttatt ttttgaatct tttatggcaa
     5581 caaatttggg cttaaacctt gcgatttgtt catttaaaag agcgatgtta tccccacaag
     5641 ctaaagcaga aatgggaatg ttttttaaag cagcaagttt aagagcattt actcctatac
     5701 tgcccgtact tccaaaaagt atcataaaag agcaaccatc acaaaagcag caatgatcac
     5761 cgcatcgatc ctatcgagca cgcccccatg accagggata agatctccac tatcttttac
     5821 acctgcttct cttttaaaat aactctcaag caaatctcca atcactgcaa aaatcgctac
     5881 aaaaaacgaa caaagcaaag aaagccaaaa actataaaca aaaactccca aaatagttcc
     5941 aataacactc gcacaaatca agccacctat aacaccttct aaggttttgt ttggacttgt
     6001 tggagaaaaa ggagttttac ccataagttt tccgataaaa tacgccccac tatcacaagc
     6061 tgcaacgata atgataagcc aaaaaagcgc gaacataccc tgatctaaat acacttgcca
     6121 aagtgctaaa ataggcaaac taggataaat ataaataaga gctgatttta aggaagcctt
     6181 tttataaacc aaatatccaa tgactaataa caaagctaaa atcccaaaaa gcaaagcttt
     6241 atgcgataaa cttcccaaaa taaaagctat agccaaaggg ataatagaaa tattttctaa
     6301 agcaaaaagt ttttttgctt cactaaaaga tagatacaat aaaaccgcaa aaacgataaa
     6361 attgataaaa aattgatcaa tcaacgcgat aataataata gcccctatca tcacaagagc
     6421 tgaaataatt ctagttgtat taaacatatt tttccttata tactaatatc taagcgatga
     6481 atgctttgtg cgtctttaaa atttggatct ttagactcat cttcttcatt tttctcatca
     6541 tcgctggttt tagcttcttg attgtgtttt ttcttttttt cttcttgttc ggctttttct
     6601 ttgatctctt ctttgatttc atgagtctca ttgacttttt caagcttgtt caaagttttt
     6661 tctttttcat taaattcagc catatttagc gtagctgcaa aaccttcttt tgcaagctca
     6721 ttgcttgctt gtgtagctgg ataagccata ttttgattta tataattgac atttcctaat
     6781 gggctaactg gcattttaat cctttgtgat attaatactt ttaaaatttg tataatttac
     6841 aaacgccttt tgctgaacct taacaaaatt ttttaaggta taatcgaccc aatacgaatc
     6901 tttctttaac ttagaaaagc ttacacaaag ccttgcagca aattctatca catcaaggct
     6961 gattttttgc ttgtttgata caatcaaagt atgtgcacta ggaatatccc ttacatgaag
     7021 ccacaaatca tcttttttag catttttaag taaaaattca ttgccttttt catttttacc
     7081 cacgcaaatt ttaaactcat tataataaaa atttgctaca agatcttctt gtttatgatc
     7141 ttgatttttt ttgctatttt ttttaggtag taaaatttca agctctatct cactcttagc
     7201 ttgaagcaat aattctttca aactcaaggt aaaatctaac ttttctttta aattttgtct
     7261 ttgtatgttt aaatttttag ctttttgttc taatttttta gcatttttat aatataaatt
     7321 agcactttgc ttaggactaa attcaagctt aaattcaagc tctttgcctt caaaatcatc
     7381 aagcttaaat tctctttcat aatcttttaa aacactcaaa tttgcaaaca atacatcagc
     7441 cctttttcta tattctaaag cttttaagag caaagaattt tcttcatcta aactagaaaa
     7501 aagttcttgt aaattttgta tttttttatc cacttgtgca agttttaaat tttttatttg
     7561 tttgatttta ctctcataaa tgcttgtaaa tttgcaagaa aaataatctt taaagtcttt
     7621 aatttcttca aaattttcat ccattttata aggctttaaa ggctctaaaa tcacattagg
     7681 ctttacgaca cgataacttt tatcaatgtg ccttaaagcc tctatgatta aatctttttc
     7741 atccgtaaga ataacattgg tatttttacc cgtaaattca aaataaattt tgctttcata
     7801 gcttttataa gccttattag cttttacact aaaacataaa atacgattgc cttcaaggac
     7861 tttaacttcc tttataaaag cattgctaaa atacttttta agcataaaat caaaaggtgc
     7921 attataattt tttgcattaa atttagctgt ataaatcgca ctcattgcac gagtaagatc
     7981 aaaaataaat ctttctctat caaagcttaa ttccaaaata ttgtcattga tacgcttgat
     8041 aaaatcgatt tttttaaact gagaaaaaaa agtttgtaat tgtaaaagtt ctgtgtattt
     8101 cataaaagaa attataaaat attttggcga atttgtggta gaattacatt aaaaaaggaa
     8161 atttgtgcag cttaatgagc taaattgtgt gattttatgt ggtggcaaat ctagtcgtat
     8221 gggacaagat aaaagcaaat tgattcttaa aaatcaaaat ttaactcaat ttcaagtaga
     8281 gaaattttct aaaattttta aaaatgtcta tgtgagtgcg aaagaagaca aatttgaaaa
     8341 ccattttagc ttgataaaag attctttaga atttgaagtt tactctccta tgcttgcgct
     8401 ttactctata ctttcaaatt ttaaaaatga atttgttttt gttttaagtg tggatagtcc
     8461 taaagtaggt gaaaatgagc ttttaaaaat gcttcctttt ttagagcaaa actataaaat
     8521 aatcatagcc aaaacccctt tacataaaca tcctttatgt ggcttttatc acagctcttt
     8581 agctcaaact tgtaaaaatt tcttagaaaa aaatgaacaa aaaataggac ttttattttc
     8641 tgagattaaa accaaatttg tagaatttga agatgaagat gcttttttaa atcttaattt
     8701 ttatgaagaa tatgaaaaat ttaaaagcga gttaagatga gaaaaattgc tttattttta
     8761 agcttatgtg tttttatatg ggctagtgat ttacaacaag ctttagagta tgaaaaacaa
     8821 ggcgattata aaaaagctat ggaaatttac aaaaaactcg ctttaaaaaa ttcatctgtt
     8881 ttgatttctc aagaacaaaa taactcaagc caagcaacac aaacgcaaaa ttctatcact
     8941 ataaaaaaag aagaaaaaca agacttttct cgcttagctt tggctaatta tcttggtgaa
     9001 aatgaaagct ttaatcccct tggcattagc tcttacaaga tgaattattt tttaccttta
     9061 gcttatagtt ttaattcttt aggaacaaat aataataaga gtgaggcgaa attccaactt
     9121 agtgttaaaa aaagactttt tgaaaattta ctaggactag atgaaaaata ttatatagcc
     9181 tatactcaaa cttcttggtg gcaaatttat gagcattctt ctccttttag agaaaccaac
     9241 tatcaaccag aattttttat agattttcct ttatatctta aagattatga attttttaac
     9301 aatctacgcg taggtatatt gcatgaaagc aatggcaagg gagatgagaa tttacaatct
     9361 cgctcatgga atagaattta tgtatctacg gctattttat ataataaatt tttatttgtt
     9421 ccacgccttt ggtatagaat tcctgaaagt aaaaaagatg atgataatcc tgctatcttg
     9481 cattatatgg gaaattttga tgtgaattta gggtatttgg gtgatgatta ttttatcaat
     9541 cttatgctaa gaaacaatct taaattccac gataacaaag gtgctataca agttgatcta
     9601 ggatatgata tttttaataa cggaatttat tggtatttac aatactttaa tggccatgga
     9661 gaaagcctta tagactataa caaacacttg caaagacttt ccactggatt tttgatttct
     9721 tactaaaata tcctttgtag ttttatcatt tcttaaaaca aatttcatta caatttcatt
     9781 tttgataatt attattacta taaggaaaga tttgtttttt aagcatatat tgagtttaaa
     9841 agtgcttata gctttacttt tattctttgg aatgataagt ttatttatag gagttatcag
     9901 tatcaatgta aaagatattc ttaatcttaa ctccactcaa ctagaaatca taacccttac
     9961 aagaattcct agacttatag cgattttact cacaggaatg agtcttagta tatgcgggct
    10021 tatcatgcaa caactcacgc aaaataaatt cgtttctcca actacggcag gaactatgga
    10081 ttgtgctaaa tttggcatac ttatttcttt aatatttttt gctggagcgt cttttttcac
    10141 tcaagctatc attgcttctg tatttgcact tttgggttct tttatattta tccaaatttt
    10201 aagaaaaatc aaactcaaag atgtgatttt tgtacctttg ataggcttga tgtttggagg
    10261 cattattagt gctataacca ctttttttgc ctatgcttta aattatatac aaaatatcca
    10321 aggctggtta caaggcagta tggcaaatgt tatgcaggga aattatgaat tgctctacat
    10381 ttctttgcca ctttttatac ttgcttattt tttagctcat aaaattacca tagttggcat
    10441 gggcgaagat gtagctttaa atcttggaat ttcttataat ggtatattat ttttaggctt
    10501 gatgattgta agcattatca ctagtttagt gattgtaagc gttgggatta tccctttttt
    10561 agggctaatt atcccaaatt tagtagctct ttatctaggt gataatctta gaaaaaatct
    10621 tatctatata gcactttgtg gagctttgtt tttacttgtt tgcgatatca tttcaagact
    10681 tgtcatcttt ccttttgaaa tgcctttaag tatcactaca ggtgttttag gatctttaat
    10741 ctttatcttt cttttgctaa aaaggaaagt ttatgcgtaa aaaaatgctg attttgagct
    10801 ttttaacact tggtatgata gggattttta tacttgtggg tttaaatggc tttgatgagt
    10861 atgccttaaa aagtcgtttt ttacaaattg cagctattat tatagtagct atttgcatcg
    10921 ctgtttcaac agtgattttt caaactttat gcaacaacaa aattctaacc cctgctatca
    10981 taggattaga ttctttatat atgttacttc aaagtgctct tatcttttct tttggtgcag
    11041 ctaatttaag tgtttataaa aacgatatca attttttaat cactctagtt tgtatggtgg
    11101 ttttttcact aggactttat aaaattttat ttagtagcga tagaagtatt tatcttataa
    11161 tgcttttagg cttagttttt ggaacacttt ttagcacttt aagctctttt tttgaagtat
    11221 taatcgatcc tgatgaattc atggtaatac aaggaagaat gtttgctagt tttgataata
    11281 ttgcttttga tattttaatt cttgcttata tcattagctt tttaagtttt atatggattt
    11341 ttcgctatat gaaattttta gatcctttaa atttaggcaa agatttagcg ataaatttag
    11401 ggataaatta tcaaaaaatt tcaaaacaat tgatgattat catagctatt ttaacttcta
    11461 ttagcactgc acttgtaggt cctataacct ttttggggct tttggtggca aatatcactt
    11521 atgagctatt taaaactgca aagcatagta ttttactaag cgcttgcata ctcattagca
    11581 ttttagcttt acttggaggg gtattttttg tctctagagt ttttgattat aatgccacta
    11641 taagcgtagt tattaatttc ttaggtggga tatattttat ctatcttgta ttaaagggta
    11701 ataaattatg attaaactaa aaaatatcac caaattttat gataataaag ccattatttc
    11761 agatcttagc cttgattttc ataaaggcaa aatcacttct ataataggag ccaatggcgc
    11821 tggaaaatcc actcttttag ctctagcaag tcgtttaata aaacctagta gtggagaaat
    11881 ttatatcgat ggaatgaaat taaaagacta taaagagcaa atcttagcac aaaaaatttc
    11941 cattctcaaa caacaaaaca atatcaattt aagattaaaa gttgaagaat tagtcgcttt
    12001 tgggcgtttt ccacattctc aaggaagact taatgcaaac gataaaatca aaatcaatga
    12061 agctttagaa tacatggggc ttagcaactt aagaaatgaa tttttagata cattaagcgg
    12121 cggacaaaaa caaagagctt ttatagccat gatcatcgct caagatactg aatttataat
    12181 gtttgatgaa cctttaaaca atcttgatat gaagcatagt gtacaaatca tgcaactaat
    12241 gaaaaattta gtcaaagact ttaacaaaag tatagctgtt gtattacatg atattaattt
    12301 tgcttcgatt tattctgatg aaatcatagc cttaaaagat gggaagcttt taaaacaagg
    12361 ctcaaaagat gaaatcatca atcaagaaaa tttaaaacaa atttatgata tggatatacc
    12421 tgtaagtcaa attgatggta agaaaatttg tatttatttt taaaaaggag aaaatatgaa
    12481 aaaatcttta gtttttgcat tttttgcatt ttttttaagt ctaatcttaa cagcttgtaa
    12541 ttcaaattca aatgaaaaca acgcaagttc tacaacaaaa accaacactg ctacgatgaa
    12601 agttttgcct attagcatga gtgatgaggg tgatagtttt ttagtgaagg atagcctagg
    12661 agaaaataaa atccctaaaa atccttctaa ggtagtgatc ttagatcttg gaattttaga
    12721 tacttttgat gctttaaaat taaacgataa agtcgcgggc gttcctgcta aaaatttacc
    12781 aaaataccta caacaattta aaaacaaacc tagtgtaggt ggagtacaac aagttgattt
    12841 tgaagccatt aatgctttaa aacctgatct tatcatcatt tctggacgcc aaagtaaatt
    12901 ttatgacaaa ttaaaagaaa tagctccaac tttatttgta ggtcttgata atgcaaattt
    12961 tttaagctct tttgaaaaca atgtcttaag cgttgcaaaa ctttatggtt tagaaaaaga
    13021 agctttggaa aaaatttcag atattaaaaa tgaaattgaa aaagccaaaa gcatagttga
    13081 tgaagataaa aaagctctta ttattcttac aaattctaac aaaatttcag cctttggccc
    13141 tcaatctcgc tttgggatta ttcacgacgt tttagggatt aacgcggtag atgagaatat
    13201 aaaagtaggc actcacggta aaagtatcaa ttctgaattt atattagaaa aaaatcctga
    13261 ttatattttt gttattgata gaaatatcat tgtaggcaac aaagaacggg ctcaaggcat
    13321 actcgataat gcgcttgtcg ctaaaaccaa agcagcacaa aacaaaaaaa tcatctatct
    13381 tgatccagaa tactggtatt tagcaagtgg aaatggacta gagtctttaa aaactatgat
    13441 tttagaaatc aaaaacgctg taaaataata taacttcgca agggctagtc tcttgcttta
    13501 atacttaata aaatatttgg gattttcaag aaagttttag tggcgaacag agagggattt
    13561 gaaccctttt tttaaataaa aaatgttttt atgttataat aaatctttaa aaaggagtaa
    13621 caaatgagct tagaattttc aaaagaaact caacattttt taaccaatta ttgtaaagat
    13681 aacaatttaa gtgaaaaaga agttttagaa cttgctttaa gttatttaga acataaaata
    13741 agaattgatg gttataaaaa ggatatagaa ctttacaagc aagataaatt aaagacttta
    13801 gattttgatg aaacttttaa tgatattaga aaagatttag aataaatgaa aattgttcca
    13861 actcctaaat ttaaaaatga gct
//
LOCUS       DAEDTT010000040        13721 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.040, whole genome shotgun sequence.
ACCESSION   DAEDTT010000040 DAEDTT010000000
VERSION     DAEDTT010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13721
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.040"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..995)
                     /locus_tag="KLC54_000852"
     CDS             complement(<1..995)
                     /locus_tag="KLC54_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177239.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPEQTNGDLSHNGNLKSKIV
                     DWNLVSAKLSNNTAILKNNISIDKFKLPKNYILIAYQDGEYFTADDNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQVIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIVVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFAIFVKS
                     NIYNNYLYIFEKTGYLIKMNLNLDNTQVFKLSEAVDKISFMGNGKFYYGDKILDLL"
     gene            complement(992..1570)
                     /locus_tag="KLC54_000853"
     CDS             complement(992..1570)
                     /locus_tag="KLC54_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177240.1"
                     /translation="MGLKDNLKAVKNELNTEEQFIENFIKGERFIRKYKFYISAVVII
                     LVAWFAGNFIISKINDYKTKEANEIYANLIQDPSNKNLLEQLKNKNTNLYAIFLLKEN
                     INDFNNTALQNELKQIYNNAQTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKLLEQNK
                     IEEANVLLSQIKENSSLNQIAKNLKHYQGITQ"
     gene            1714..1998
                     /gene="gatC"
                     /locus_tag="KLC54_000854"
     CDS             1714..1998
                     /gene="gatC"
                     /locus_tag="KLC54_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HBD9177241.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIVQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            2066..2629
                     /locus_tag="KLC54_000855"
     CDS             2066..2629
                     /locus_tag="KLC54_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HBD9177242.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSTFYKIENQSLAGFAGFLAILIIFWIVCLLAGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHASEKLQDIVSDLNNTQKGE"
     gene            2631..3104
                     /locus_tag="KLC54_000856"
     CDS             2631..3104
                     /locus_tag="KLC54_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HBD9177243.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            3105..4610
                     /gene="lysS"
                     /locus_tag="KLC54_000857"
     CDS             3105..4610
                     /gene="lysS"
                     /locus_tag="KLC54_000857"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HBD9177244.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFNKDSVGEELYAIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNAEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLVVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMIDFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKVDGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            4607..5851
                     /locus_tag="KLC54_000858"
     CDS             4607..5851
                     /locus_tag="KLC54_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HBD9177245.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVIGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDINNEKLQ
                     ENIKQELKKLASNFIIYERAMF"
     gene            5848..6393
                     /locus_tag="KLC54_000859"
     CDS             5848..6393
                     /locus_tag="KLC54_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HBD9177246.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            6407..7243
                     /locus_tag="KLC54_000860"
     CDS             6407..7243
                     /locus_tag="KLC54_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HBD9177247.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSSNNNDTTNFAMPDQEVPAEPTATTSENTTPQASTPKQEVTQTAKPKEE
                     AKKQTAVKKEKESTKQIPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGGKEITKVLIGPFEKADIAAELAKIRKDIAKDAFSFT
                     LK"
     gene            7240..8028
                     /locus_tag="KLC54_000861"
     CDS             7240..8028
                     /locus_tag="KLC54_000861"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HBD9177248.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAINALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKERFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIRDKREMIKNAMQQALILK"
     gene            complement(8102..9001)
                     /locus_tag="KLC54_000862"
     CDS             complement(8102..9001)
                     /locus_tag="KLC54_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HBD9177249.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALEPINIEQNNNYSDYFENSVLKIRIEKEIDLLKRNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNAQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSSTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENTPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            9091..9906
                     /locus_tag="KLC54_000863"
     CDS             9091..9906
                     /locus_tag="KLC54_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HBD9177250.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            9975..10757
                     /locus_tag="KLC54_000864"
     CDS             9975..10757
                     /locus_tag="KLC54_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HBD9177251.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            10741..12732
                     /locus_tag="KLC54_000865"
     CDS             10741..12732
                     /locus_tag="KLC54_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HBD9177252.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            12725..13450
                     /locus_tag="KLC54_000866"
     CDS             12725..13450
                     /locus_tag="KLC54_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HBD9177253.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            13478..>13721
                     /locus_tag="KLC54_000867"
     CDS             13478..>13721
                     /locus_tag="KLC54_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD9177254.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKNKLDTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRVDIFSIQNAQICILNLFK"
BASE COUNT         4706 a         1667 c         2593 g         4755 t
ORIGIN      
        1 agcaaatcta aaattttatc tccgtagtaa aatttaccat tccccatgaa agaaatttta
       61 tcaacagctt ctgaaagttt aaatacttgt gtattatcta aatttagatt cattttgata
      121 agatagcctg ttttttcaaa aatatataaa taattattgt atatattgct ttttacaaaa
      181 atagcaaatt caaatttttt ttctgcaatt tttcttaagt tataatcagt tttaataata
      241 gtgccatctt tttctagtat aaaaatacca tcatcactaa gtgcaacatc ttttatgtca
      301 gcgtcaagat aaagagttct agcagggctt acaacaatga tttttttagc tgttgctgct
      361 ataagtttat ctccaattac acttagatgg attacattgt tgaaaaaatt ttctgctgaa
      421 ataaccacat ctttaatgac ttgaagattg tttcttgaaa gaattaaaat tttgccatct
      481 agcgttggat atacgatgat attgtctaaa aatataggat tagcggtacg actgtcttga
      541 gctggagctg aggttagggt ttgactgaat ttaataccca aagaacgatt tgcaagaact
      601 atagtattat ttgcaagtac aagggctaaa tcatctccat tagaagctac tcctacaaca
      661 ctagcgtcaa attgaaaatt ataaatttca ttataagaat tgtcaaaaat ttttaaattc
      721 ccattgtcat ctgcggtaaa atattctcca tcttgataag ctataagtat ataattttta
      781 ggaagtttaa acttatctat agaaatatta ttttttaata tagcagtatt attgctaagt
      841 tttgcagaaa ctagattcca gtcaacgatt ttgcttttta aattaccatt gtggcttaaa
      901 tctccattgg tttgttctgg ttcaaaatat tgtcttttag tgccacaagc acatagaaat
      961 attaaacaaa atagtgttaa aaatattttt ttcattgtgt aatgccttga taatgtttga
     1021 ggtttttagc tatttgattt aaacttgaat tttcttttat ctgagaaagt aaaacattag
     1081 cttcttcgat tttattttgc tctaaaagtt tgtaagcttc taataattta tcataatttt
     1141 ttaaaaatat cgatttatcc cctaaagata atgcaataat atttttaagt aaagtgtttg
     1201 tttgagcatt attataaatt tgttttagtt cattttggag agctgtatta ttaaaatcat
     1261 taatattttc ttttagtaaa aagatagcgt aaagattggt atttttattt ttaagttgtt
     1321 ctaaaagatt tttattgcta ggatcttgta ttagattggc ataaatttca tttgcttctt
     1381 ttgttttata atcgtttatt tttgagatta taaaatttcc agcaaaccaa gcaactaaaa
     1441 ttatcacaac agcagatata taaaatttat acttgcgtat aaatctctct cctttgataa
     1501 aattttctat aaattgttct tctgtgttaa gttcattttt aacagctttt aaattatctt
     1561 ttagtcccaa aatttatcct tgaaaaaata tttttatttt tgtatagaaa aattatggta
     1621 ttgtatcata taaattgcaa aatatcctaa acaatttaaa gctttttatg atataatttt
     1681 caaaatttta acttttttat taaggtttaa gaaatgcaaa tagatgagaa attattaagc
     1741 aagcttgaaa aattaagtgc tttacaaata acaaaaaaca gaaatgaaac cattgtacag
     1801 ttaagtgaaa ttgtgaattt tgttgaaaaa ttaaacgaac ttgatctaga ttcccaagag
     1861 attactgtaa gcactataaa aggtggagct cctttgagga ttgatgagat aagaaatagc
     1921 aatgttattg atgaggtttt agattgtgct ccaaaaaaac aagaacattt ttttgttgtt
     1981 cctaaaatca tagaatgatt aacttagcat ttagtgctta tttgtagaat aaatttaaaa
     2041 caaaaaaaat cagagagtga ttgaaatgaa tttttattgg tttgatgctt ttattttagg
     2101 atttaccttg cttttagggc ttaagggtat tatcaatggt ttgataaaag aaatttttgg
     2161 acttttgggt attattggtg gtgtttttat tgcttcaaaa tacgcaactc aagcggctga
     2221 atttatacaa agtacttttt ataagataga aaatcaaagc ttagctggat ttgctggatt
     2281 tttggccata ttaattattt tttggatagt ttgtttgttg gcaggtaatt ttctttctaa
     2341 gttgatcaaa ttaagtggcc taggtttttt agatcgtatt ggtggcttta tatttggtgg
     2401 ggcaaaaatc tttttaattt ttgcaatttt agttttttgt gtagcaagaa tcgatttttt
     2461 aaatgataaa ttagataatt ttgctaaaaa tagctatact ttgaatttgc ttaaagaaac
     2521 tggatctttt attatgaatc aacctttaac agaaaatagt ctagatcatg ctagtgaaaa
     2581 gttgcaagat attgtaagtg atttaaacaa tactcaaaaa ggggagtgat atgctgatag
     2641 aaaatgtgga atatgatgtt ttacttgaga gatttaaaaa aatattaaga caaggcggac
     2701 ttaaatatac caagcaaaga gaagtacttt taaaaactct ttatcacagt gatactcatt
     2761 acacacccga aagtttatat atggaaatca aacaagctga acccgattta aatgtaggaa
     2821 ttgcaactgt ttatcgtact ttaaatttgc ttgaagaagc agaaatggta acttccattt
     2881 cttttggttc agcaggtaaa aaatacgagc ttgccaataa acctcaccat gatcatatga
     2941 tatgtaaaaa ttgcggaaaa attatagagt ttgaaaatcc tattatagaa agacagcaag
     3001 ccttgattgc aaaagaacat ggttttaaac ttacagggca tttgatgcag ctttatggtg
     3061 tttgtggtga ttgtaacaat caaaaagcaa aggtaaaaat ataaatgttt gataatattt
     3121 tagagcagca aagaatagaa aaagccaagg aattaaaaaa tttagggatc aatccttatc
     3181 ctcatttttt agaaaaagaa atgtctttaa agacttttaa ggataaattt tcttatattt
     3241 tagagcaagt tgaaaaaaga gatgaaagtg tcaatgctgt tgttgcagga cgtttgaaac
     3301 ttttgcgtat agctgggaaa tcgatttttg caaacattga agatgaagat acaaatttgc
     3361 aaatttattt taataaagat agtgtaggtg aagaacttta tgcgattttg aaaaagaatt
     3421 tagaagtagg tgatattgtt ttggttaaag gttttccttt tgtaactaaa acaggtgagt
     3481 ttagtttgca tgcaagtgaa gtaaaactcg ctacaaaagc tattgttcct ttacctgaaa
     3541 aatatcatgg attaacagat attgagcaaa gatatcgtaa acgttatgtt gatatgataa
     3601 tgaatgcaga agttagaaaa gattttttag tgcgttctaa agtggtgagt ttgattcgtc
     3661 atttttttga aaataaaggc tttttagaag tagaaactcc tatgatgcat ccgattgcag
     3721 gtggagcaaa cgctaagcct tttgtaactt ttcacaattc tttaggcgta gaaagatttt
     3781 taagaattgc tccagaactt tatcttaaaa gacttgtagt gggtggtttt gaggcagttt
     3841 ttgaaatcaa tcgttgtttt agaaacgaag gtatggattt aacccataat cctgaattta
     3901 caactataga attttattgg gcttatcata attataaaga tttaatggat ttaactgaag
     3961 aactttttgc tttactttta gataaactta atttgggaaa aacaatagaa tttgatggaa
     4021 aaatgataga tttttctaaa ccttttgaaa gaattactta caaagatgca ctttgtaaat
     4081 atggtggttt ggatagggat ttaattgaag ataaggaaaa aattcttact aaattaaaag
     4141 tagatggttt tgaagcgaat gaaaagcttg aacttggaca tttacaagct gaactttttg
     4201 ataattatgt ggaagaaaaa ttgatcaatc ctacttttgt gattgatttt cctatttcca
     4261 taagtccttt atcaagacgt agcgatgagg attctcagat tgctgagaga tttgagttgt
     4321 ttatttgtgg aagagaattg gcaaatggtt ttaatgagct taatgatcct cttgatcaat
     4381 atgagagatt tttaaaacaa attgaagcta aaaatgcagg cgatgaagag gcttgcgaaa
     4441 tggatgaaga ttttgtaaat gctttgggtt atggaatgcc tccaacggca gggcagggta
     4501 taggtataga tagacttgtt atgcttttga caaataaaaa atctattcga gatgtgatat
     4561 tgtttcctgc aatgcgtcca ttaaaatcag aactaaagga gaaagaatga gtttagaaat
     4621 gtttgataaa gaaatttttg atttaacaaa caaagagtta gagcgtcaat gcgaaggtct
     4681 tgaaatgata gcgagtgaaa atttcacttt acctgaagta atggaagtta taggaagtat
     4741 cttgacgaac aaatacgcag aaggttatcc aggtaaaaga tattatggtg gttgtgaatt
     4801 tgttgatgag attgaaactc tagctattga aagatgtaaa aaacttttta attgtaaatt
     4861 tgctaatgtt cagcctaatt caggttctca agctaatcaa ggtgtttatg cggctttgat
     4921 taatccaggt gataaaattt taggaatgga tttaagtcat ggtggacatt taactcatgg
     4981 tgcaaaagta agttcttcgg gtaaaatgta cgaaagttgt ttttacggcg tagaacttga
     5041 tggaagaatt gattatgaaa aagtaagaga aatcgctaag aaagaaaagc caaaattaat
     5101 agtttgtgga gctagtgctt atgcaagagt gattgatttt gctaaattta gagaaattgc
     5161 tgatgaaata ggtgcctatc tttttgctga tatagcacat attgcaggtc ttgttgtggc
     5221 aggcgagcat ccaagtcctt ttccgcacgc tcatgtagta agctcaacca cacataaaac
     5281 tttgcgtggt ccaagaggtg gtattattat gacaaatgat gaagagcttg ctaaaaaaat
     5341 taattctgcc atttttccag gtattcaagg tggtcctttg atgcatgtaa ttgctgcaaa
     5401 agcagtagga tttaaattta atcttagcga tgagtggaaa gtttatgcaa aacaagtaag
     5461 aaccaatgct caagttttag ctaatgtttt aatggataga aaatttaaac ttgttagcga
     5521 tggaacggat aatcaccttg ttttaatgag ttttttagat cgtgaattta gtggaaaaga
     5581 tgcagattta gctcttggaa atgcaggtat tactgcaaat aaaaataccg ttccaggaga
     5641 gattagaagt ccttttatca caagtggatt aagacttgga actccagcgc ttactgccag
     5701 aggttttaaa gaaaaagaaa tggaaattgt gtcaaattat attgcagata ttttagatga
     5761 tattaataat gaaaaattac aagagaatat taaacaagaa ttaaaaaaac ttgcaagtaa
     5821 ttttattatt tatgaaaggg ctatgttttg atttcaccaa tggatatgtc gctaattaaa
     5881 ataattggcg atcattatta tataagacgc gataaaattg taaataaaat tacacataga
     5941 ggtcgcttat tttttgataa atttgaaaga gttgatgctc ctttaaattt aaatgtcatg
     6001 agagaacacg ctgctaaaaa aattgttgtc gctcatgatt taataacaaa agataataaa
     6061 gtagaaaata ttgtctttga ttataatggt tttaatgctg aaagatttta tcaccgtgca
     6121 caacttattt taagagaaga aggttttata aatttcacag cctataagac taaaactcca
     6181 ggacatttac atctttatat tcacaaagga cacacggcgt taaacgaagg ttattcttta
     6241 gcgtctaaac tttcaatgat gtttgcaagt aaaatgccag tagaatggaa ggtgtttcct
     6301 agtatggatg tacctaggga atttaatatt ttaatattgc cttatgaggt ttatcaaaaa
     6361 gaacgaggaa gttcttggtc taagcatatg taagaaagga caaattatgg aaaatcaaaa
     6421 aaatgaattt gatgatatta ttttagaaaa aagtaataaa agtgaaaaag taaaaaaaat
     6481 tcttttacga gttattgctt tagttatttt gtttttagct atcatgatag ttatgaagct
     6541 tattaatggt agtggtgatg aaaatacgca aaatcaaagt gtattgccaa gtgaacctat
     6601 agcaactcaa gacaataaca atgatacttc ttttgaaagt atgccaatta cagataatac
     6661 ttcagcagaa gatcaatttg aggcattaag aaaacaattt caagatgaac aaaatacaac
     6721 tcaaaataca acaacctcta gttcaaataa taatgatact acaaattttg ctatgcctga
     6781 tcaagaagtt ccagcagaac ccacagcaac tacttcagaa aataccactc cacaagcaag
     6841 tactcctaaa caagaagtaa cacaaactgc aaaacctaaa gaagaggcaa aaaaacaaac
     6901 agctgtaaaa aaagaaaaag aaagtacaaa acaaatccct aaaaaagaac aaaatgcaaa
     6961 tgatttattt aaaaatgttg atgctaaacc tgtgcatcca agtggtttag catcgggcat
     7021 ttatgtgcaa attttctcag taagtaattt agatcaaaaa tcaaaagaac ttgcttctgt
     7081 aaaacagaaa ggttatgatt ataaacttta taaaactaca gttggaggta aagaaattac
     7141 caaggtttta ataggaccat ttgaaaaggc agatattgca gcagaacttg ctaaaatccg
     7201 taaggatatt gcaaaagatg ctttttcttt cactttaaaa tgaaattttt agcagttata
     7261 ggcgatccta tttctcactc taaatcgcct agaatgcata ataatgctat taatgcctta
     7321 gggcttgata gcatttatac acgctatcat ttaagaaatg ctaactgttt aagagaagat
     7381 ttttttaaat taggacttag tggagctaat attactttgc cttttaagga aaaagcttta
     7441 gatattgctg atgtgaagga tgattttgct agaaatattg gctctgcaaa tactttatgc
     7501 ttaaaagaag ataaaattta cgcttataat actgatgctt taggtttttt agaggctatt
     7561 aaggattttg ataatataaa aaaagctttg attttgggtg ctggaggtac agctttggcg
     7621 cttgcttatg cattaaaaca aaaaggcgta gaagtgtata tagctaatcg tagtaaagaa
     7681 agatttaaag attttttagc ttatccaact tatctttata aaaacttgca agattttgac
     7741 tttgatttgg ttataaattc aacttctgct ggattaaaag atgaaaattt accttgtgat
     7801 agagagcttt tagatagaat tttacctaaa gctaaatttg cttttgaggt aatttatggc
     7861 agagaaacac ctttttatag attgtgtaaa gagtatcatt taaaaattaa agatggactt
     7921 gatatgcttt tatggcaagg ggtttttgct tttgagcttt tttttgaaat acgagataaa
     7981 agagagatga taaaaaatgc aatgcaacag gcattgattt taaagtagaa tgatagttat
     8041 ttttttgtat aagaaaatct tattttttgt gtgagaaagt ttaattttct cacaagtttt
     8101 atcattcaaa tatttctacc ccatcttgat ttttactttg attattttga tttgttgaag
     8161 atggatttgt aggaatattt tgtgtaggtg tgttttcaat tgtattattt tgattagagt
     8221 ttgtttgagg tagactttct tcaaaagtag catcgccatc aaaactatta aaaccactgt
     8281 ttgtattagg tatagttttg cctatgtctg ttgcttttgg aagattgtta taaagtgtat
     8341 ttaatgtatt tttataaaaa gctaaaaaac ttttatcaat ttcaaaagca ggttgctcta
     8401 aacctttatt aagttgagtt ggtacggtgg agatagtagt tttaaacata ttaaccccat
     8461 catcattttt aataggatag ttaagcgcaa ctaaagaatc tagtttggtg ctgcttgaaa
     8521 gattggttga attttgtgga ttgtgtgcat ctataaaatc tattttacct ttaaaattta
     8581 tacctaaatt ggattttaca taatctccac tcataaaatt gcttgttttt tgtgcatttt
     8641 tttcttccgt ataaatactg attgaacttt taagagtata gtctggatta gtagtaacta
     8701 ttttatagcc ttttagttga gcgatggttt tgatctgctc ttctaaattt cgttttaaaa
     8761 gatcaatttc tttttctatg cgaattttaa gcactgaatt ttcaaaataa tcagaataat
     8821 tgttattttg ttctatatta ataggctcaa gagcaatgct tactccagaa tcaataggtt
     8881 caacctttgt tggaacttgg ggtttaaaat ttggcataga aacattgaca aaattactgc
     8941 ttgtaccccc acaagctgct aaaattaaca tactactagc aagtaaaata tattttttca
     9001 ttttttacct ttatttaatg tgtttgtgtt aattatagca agttaaagtt tttttgttat
     9061 atttttataa aagaaaatta ggaaagatat atggaatttt ggcagcatat ttattcaaat
     9121 tttaatgtta tagcttttag catctttggt ttaaaggtgc attggtatgg cattatgtat
     9181 gttatagctt tgcttttggc tttgcttttg gctaaatttt ttgtaagaaa atttcaacta
     9241 gacattaatg aaaaacattt ggatagttat tttatatggg ttgaaatagg ggttatttta
     9301 ggtgcaaggc ttggatatat tttgatttat gatgcaaata ctatgtatta tattactcat
     9361 ccttggcaaa tttttaatcc ttatattaat ggtgaatttg taggtattcg aggtatgagt
     9421 tatcatggag caattatagg atttttgata gctactttat tgttttgtaa aaaatataaa
     9481 acaaatcctt ggatttttct tgatttggtt gctttaagtg ttccattggc ttatgttttt
     9541 ggtcgtatag gaaatttttt aaatcaagag ctttttggtc gcattacaaa tgtgccttgg
     9601 ggaatttatg ttgatggagt attgcgccat ccatcgcaac tttatgaagc atttttagaa
     9661 ggtattgttg tttttattat agtttattta gcaagattta agcaaagttt tcaaggggaa
     9721 ttgattcttg tttatgctgg tgcttattca ttagcaagat ttatatgtga attttatcgc
     9781 gagcctgatt ttggtatagg ttttgtttta tggggtatga gtatggggca aattttaagt
     9841 tttataatgt ttataacagc tttgttagtt tatatttgta taaagtttaa aaaagtaaat
     9901 atttaatcta tcttaaagac ttttgtaata taatgaaatg gattttttta atttcttttt
     9961 acaaaggagt aaagatgcgt gagcttatcg aaggttattt gggtaagagc attgagggca
    10021 aaaaaagtaa aatgcctgcg aaattagact ttatccaaag tgcctcaggg ctttttttag
    10081 gtctttttat gtgggtgcat atgctttttg tttctacaat tttagtcagt gaggattttt
    10141 ttaattctgt agtgcatttt ttagaattaa aatttgttta cgataatcct gttatgagtt
    10201 atcttacttc atttttagcc gcctgtgttt tagtggtttt tttcgttcat gctttacttg
    10261 caatgagaaa atttcctatt aattaccgtc agtatcaaat actaagaaca cacagtaaaa
    10321 aaatgaatca cagcgatact tcgttatggt gggttcaagc ttttacaggt tttattatgt
    10381 ttttcttagg ttctgctcat cttattttta ttgtaaccaa tgcagataaa atcagcggcg
    10441 atatgtcagg agatagggtt gtaagtcatt ttatgtggct tttttatgct gttcttttag
    10501 tctgtgttga acttcatgga agtatagggc tttatagact ttgtgttaaa tggggttggt
    10561 ttgaaggaaa aaatgtaaaa gaaagtcgca aaaagcttaa aactgctaaa tggataatca
    10621 gtattttctt cctagtttta ggtgtgttaa gtcttgcagc atttataaaa ataggttatg
    10681 aaaactacca aaatcaaacc caaactactg cgatgataaa aaactacaat ggagcaaatt
    10741 atgaatatac aatatagtga tgctttagta ataggcggag gattagcagg tcttagagcg
    10801 gctattgaag tagcaaagag tggccaaagt gtaacacttt taagtatttg tccagtgaag
    10861 cgttctcact ctgcagcggt gcaaggaggt atgcaggcaa gtttagcaaa tggggcaaaa
    10921 ggtgagggtg ataatgaaga tcttcacttc gcagatacag taaaaggaag tgattggggc
    10981 tgtgatcaag aagtagcaag aatgtttgct caaactgcac caaaagcagt gcgtgaactt
    11041 gcggcttggg gtgtgccttg gactagagtt actaaaggtc caagaactgt tgtaatcaat
    11101 gcacaaaaaa ctgtgattga agaaaaagaa gaagcgcacg ggcttattaa tgctagagat
    11161 tttggtggaa ctaaaaaatg gagaacttgc tatatcgcag atgcaacagg gcattgtatg
    11221 ctttatggtg tagcaaatga agccattaag caccaagtaa agatcatcga tagaatggaa
    11281 gcggtaagaa tcatccatga tggtaaaaaa tgcttaggtg taattgctag agatttaact
    11341 aatggacaac tcattgctta tattgcaaga ggaaccatga tagcaacagg gggctatggt
    11401 agaatttata aacaaactac aaatgcggta atttgcgaag gaacgggtgc agccatcgct
    11461 cttgaaacag ggctttgcag actttcaaat atggaagcag tgcaatttca tccaactcct
    11521 attgtaccaa gcggtatttt gcttactgag ggttgtcgtg gtgatggcgg aattttacgt
    11581 gacgtggatg gatatcgttt tatgcctgat tatgaaccag agaaaaaaga acttgcaagc
    11641 cgtgatgtgg taagtcgtag aatgatggaa catattcgta aaggcaaagg tgtaaaaagc
    11701 ccttatgggg atcatttatg gcttgatatt tctatattgg gtcgtgctca tgtggaaaaa
    11761 aatcttcgtg atgtgcaaga tatttgtaaa acttttaatg gtattgatcc agcagacgag
    11821 ggtccaaaag gttgggcacc agttcttcca atgcagcatt attctatggg tggaattaga
    11881 actaaaccaa cgggtgaaag tcaatggtta aacggacttt ttgcttgtgg ggaagcagct
    11941 tgctgggata tgcacggatt taatcgttta ggtggaaatt catgtgctga aactgttgta
    12001 gcaggtatga tagtgggaga ttattttgca gattattgta aaaataatgg tgaagtaatt
    12061 gatacaaatg tagtaaaaga cttcttaact aaagagtatc aatatttaaa atctttagta
    12121 gataaagaag gtaaacataa tgtttttgaa atcaaaaaca gaatgaaaga aatcatgtgg
    12181 gataaggtgg ccatctttag aacaggtgaa ggtttgaaag aagcagtaga tgaacttgaa
    12241 aaactttata aagattctca agacgttaaa gtacattgta aagaacttga ttgtgcaaat
    12301 ccagagcttg aagaagcgta tagagtgcca agaatgttaa aaatagcact ttgcgtagct
    12361 tatggagcgc ttttaagaac agaaagtcgc ggggcgcatt atagggaaga ttatccaaaa
    12421 agagatgatt taaattggat gaaaagaacc aatacttttt gggtagaagg cgaaacctta
    12481 ccacgcatag aatacgaaga gcttgatatt atgaaaatgg aaattccacc agcattccgt
    12541 ggatatggag ctaaaggaaa tattatagaa aatcctttaa gtgaaaaacg ccaagctgaa
    12601 gtggatgcta tccgtgaaaa aatggaagct gaaggcaaag gtcgttatga aattcaaaac
    12661 gctttaatgc cttatgaatt gcaagctaaa tataaagcac caaaccaaag aataggagtt
    12721 gattatgagt agaaaattga caataaaggc atttaaatac aatcctttaa gcaaaatttc
    12781 taaaccacat tttgtgactt atgagcttga agaaactcct tttatgacgg tttttgtatg
    12841 tttgactttg atccgtgaaa aaatggatgc agatctgagt tttgactttg tttgtcgtgc
    12901 agggatttgc ggatcttgtg caatgatgat taatggagtg ccaaaacttg cttgtaaaac
    12961 tttgactaaa gattatcctg atggagtgat agagcttatg cctatgcctg catttaggca
    13021 tattaaagat ttaagcgtga atacaggcga gtggtttgaa gacatgtgta agcgtgttga
    13081 aagctgggtg cataatgaaa aagaaactga tatttctaaa cttgaagaac gcattgagcc
    13141 agaagttgcg gatgaaactt ttgaacttga tcgttgtata gagtgtggaa tttgtgtagc
    13201 ttcttgtgca actaaactta tgcgcccaaa tttcatagct gctacagggc ttttaagaac
    13261 agctagatat ttacaagatc cgcatgacca tagaagtgtg gaagattttt atgaattagt
    13321 aggcgatgat gatggtgttt ttggttgtat gtcgttgctt gcttgtgaag ataattgccc
    13381 taaagaatta cctttacaaa gtaaaatcgc ttatatgaga agacaacttg tcgctcaaag
    13441 aaataaataa atctttcccc tttttaaggg gaagattatg aaagaattat tccaaaaaat
    13501 ttggcaaaat gaactccaat ttttaaattt tgatgctaaa tttcaagata aaaacaaact
    13561 tgatacagcc gagtgtgcga ttattttaag tgtcaataaa gacaattatg aaagatattt
    13621 tctcttaaaa gaatttcaag agctttgcaa aaaaattgat ttaagagtgg atatttttag
    13681 tatacaaaat gctcaaattt gtattttaaa tctttttaaa t
//
LOCUS       DAEDTT010000041        13438 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.041, whole genome shotgun sequence.
ACCESSION   DAEDTT010000041 DAEDTT010000000
VERSION     DAEDTT010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13438
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.041"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..351
                     /locus_tag="KLC54_000868"
     CDS             <1..351
                     /locus_tag="KLC54_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177255.1"
                     /translation="GFLMLFYLILTQGNFKTEFIFIRRIRLFLPIYYLFLALIIFTGC
                     LLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKARRFRKYATFRWISCLILPFE
                     IFLLFLPFLIERYL"
     gene            353..1009
                     /locus_tag="KLC54_000869"
     CDS             353..1009
                     /locus_tag="KLC54_000869"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HBD9177256.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTIPFLNELGVKKL
                     HLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVD
                     FQGEQQSHFDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL
                     "
     gene            1088..1288
                     /gene="rpmE"
                     /locus_tag="KLC54_000870"
     CDS             1088..1288
                     /gene="rpmE"
                     /locus_tag="KLC54_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HBD9177257.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            1291..2115
                     /gene="rsmI"
                     /locus_tag="KLC54_000871"
     CDS             1291..2115
                     /gene="rsmI"
                     /locus_tag="KLC54_000871"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HBD9177258.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNLPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELPLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            2129..2812
                     /gene="rlmB"
                     /locus_tag="KLC54_000872"
     CDS             2129..2812
                     /gene="rlmB"
                     /locus_tag="KLC54_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HBD9177259.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKTTFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            2805..3743
                     /locus_tag="KLC54_000873"
     CDS             2805..3743
                     /locus_tag="KLC54_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177260.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSSNAWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLGGNNVVVIDNNK
                     AQETNQTESVLPSQNISLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTPKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPAGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            3737..4543
                     /locus_tag="KLC54_000874"
     CDS             3737..4543
                     /locus_tag="KLC54_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177261.1"
                     /translation="MVKKIIILTLWVNISFAISSLELAKNLVNNSSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLRLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYINNIKRIGAYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            4555..5757
                     /locus_tag="KLC54_000875"
     CDS             4555..5757
                     /locus_tag="KLC54_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HBD9177262.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            5761..7008
                     /locus_tag="KLC54_000876"
     CDS             5761..7008
                     /locus_tag="KLC54_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HBD9177263.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVEEILNADVDVFVELMGGVDEAFKIVSEILKKEKAVVTANKAMLAYH
                     RYEVENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFEQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYELLSKDEIYT
                     KYYLRVKVEDKIGILSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
     gene            7008..7346
                     /locus_tag="KLC54_000877"
     CDS             7008..7346
                     /locus_tag="KLC54_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HBD9177264.1"
                     /translation="MGVKAYLDGILGEDKACKFLKKQGFEILKRNFHSKFGEIDIIAK
                     KDEILHFIEVKFTQNDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQIDLICIKND
                     VIQFCENISF"
     gene            7403..7717
                     /gene="trxA"
                     /locus_tag="KLC54_000878"
     CDS             7403..7717
                     /gene="trxA"
                     /locus_tag="KLC54_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HBD9177265.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            7851..8789
                     /gene="trxB"
                     /locus_tag="KLC54_000879"
     CDS             7851..8789
                     /gene="trxB"
                     /locus_tag="KLC54_000879"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HBD9177266.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGIAQVMDGISFMAPWNEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKRAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVTGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCSMEEGGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            9032..9748
                     /locus_tag="KLC54_000880"
     CDS             9032..9748
                     /locus_tag="KLC54_000880"
                     /inference="COORDINATES: protein motif:HMM:NF025004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HBD9177267.1"
                     /translation="MDKKQSRRNFLKASSLFALVGASAPSMVFAHTHNQNNLNSTQNY
                     RARIFFNNSAQLDILSEAVERIFPEDDLGPGAKKLGVAIFIDNELAGNYGSGAKDYRF
                     GPFIQGKKNQGYQYPLTRAELFKMGVNALDEEAKLRYKKGFVELSAKQKDEVLRAFEQ
                     DKTKVSFGDKIKASDFFTELRSITITGVYADPIYGGNANMQAWRMKKFPGAQMTYATQ
                     VLDGDKFEVIEPISLADMSH"
     gene            9759..11476
                     /locus_tag="KLC54_000881"
                     /pseudo
     CDS             9759..11476
                     /locus_tag="KLC54_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934522.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
     gene            complement(11511..13292)
                     /locus_tag="KLC54_000882"
     CDS             complement(11511..13292)
                     /locus_tag="KLC54_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HBD9177268.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAAMLKNKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAVKNAHLVFGDNDDGMSFFS
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDVLYEQASVGVSILEIKKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSLDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNIDEANRFGWIVEINPFDVK
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKHKYKKGADTSKI
                     LDEGTLYVGQFNGKVGDFKGQGKWIALEYGKNGLDEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYEGMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVMMIRKLDGGVIGS"
BASE COUNT         4909 a         1827 c         2224 g         4478 t
ORIGIN      
        1 ggttttttaa tgctttttta tcttatacta acacaaggaa attttaaaac cgaattcatt
       61 tttattcgta gaatacgatt atttttacca atttattatt tatttttagc tttgattatt
      121 tttacaggtt gcttgttatc agcaatgaaa caatttcaaa tgaatgtcaa tatctgggta
      181 atgatttttt cttggatctt aatttttgcc ttagcaattt ttcactttgt ttgttttaaa
      241 aaagcaagaa gatttagaaa atatgccact tttagatgga ttagttgttt gattttacct
      301 tttgaaattt ttttattgtt tttgcctttt ttaatagaaa gatatttata aaatgcaatt
      361 tttgtataac aagcaagctg gagaagagtt tatacaactt caaggtgaaa actttaacca
      421 tttaaaagta agaagagtaa aggaaaattc ggagctaaat cttagaaatt tacaagataa
      481 ttttctttac aactatacaa tcacaaattt aacaagaaat tcttgcactt taaaattttt
      541 aaacaaaaaa tcacaaaata taaaacaaag tgaattaaac ttagccttag ccattataga
      601 tattaaaatt ttagaaaaaa ctataccttt cttaaatgaa cttggagtaa aaaaattaca
      661 tttggttttt acaaattttt cacaaagaaa ttttaaaatc gatttagaaa gatttgaaaa
      721 aatcattatt tcttcttgtg aacaatgcgg tagaaatact aaaatggatt taattatcca
      781 ccaaagcact caagaatttg ttcaaaaatt tccaaatgca attatggttg attttcaagg
      841 agaacaacaa agtcatttcg atgaaaaaga attatatttt ataggtcctg aaggtggatt
      901 taacaatgat gagagattat tgtttaaccg gaaaatctct cttaaaagct ctaatattct
      961 aaaaagtcaa acagctatta tagctatagc ttcaaaaatt ttgctttaac ttttcttaaa
     1021 ttaatctctt ttttatgtta aataatttat aatcacggct tattgtttta atttttaagg
     1081 aaaactaatg aaaaaagaaa ttcacccaga atatgtagaa tgcaaagtaa gttgtgcttg
     1141 tggaaatact tttacaacaa agtcaaacaa agcagaatta agagtagata tttgttcaaa
     1201 ttgccatcct ttttttacag gcagtgaaaa aattgtagat gctgcaggtc gtgtagagaa
     1261 atttaagaaa aaatacgcaa tgcaataatt atgctttatt ttattcctac tcccatagga
     1321 aatttaagcg atatttcttt tagagcctta gaacttttaa agacttgcga tcttgtgttt
     1381 tgcgaagata caagagtaag taagtctttg atttcgttat taaataccaa atttcacact
     1441 gatatacata tttctaaatt tatagcctta cactcccata atgaaaaaga agttttagca
     1501 agtattgatt taaagatatt tgaaaaaaat gtagcttatt taagcgatgc aggaatgcca
     1561 gggattagtg atcctggcaa ggctttggta gaatttgcac aagaaaataa tatcacctat
     1621 gaaattttac caggtgcaaa tgcagcctta gttgctcttg taagctcagc attttgtcaa
     1681 aaagaattta tctttattgg ttttttagca aataaaggca aagaaagaca aaaagacata
     1741 gaaaaaattt taaaccttcc ttatccaagt attatttacg aatcccccaa gcgtatttta
     1801 tctttagtag aacaaattat gattctagac agccaaagag aaattttttt gattaaagaa
     1861 atcagtaaaa aatttgaaaa aaaatttaaa ggcaatgcta aagagctttc tgaaatttta
     1921 aaaaagtcta atttaaacgg tgaatgggtt gtagtactgc aatcaaaaga gcaaaatttt
     1981 ttgcaaaata ctctttgtga aaaagatatt atggatttag agctgccttt aaaagcaaaa
     2041 gcaaaattat tatcaaagat caatggaaaa aatgcaaaag aaatttatca aaaactgctt
     2101 ttaagtcaag attaggtaaa attttaatat gatagtttat gggaagcaaa tattttttta
     2161 tattttagaa tatcataaag actgtatcaa tgagctttat ttagcaaaag aatgtgataa
     2221 aactactttt tccaaaatcg caaaatcagg ttttaaaatc aaaaaacttg attttaaaac
     2281 tgctcaagct tatgcgaaag gtggaaatca tcaaggtttt ttgctagata ttaaagaaag
     2341 ttcttttgcg aatttaaatg agatcaaaaa aaatgatttt attgttatgc tttatggaat
     2401 tagcgatgta ggaaatatag gggctatcac gcgtacagct tatgctttag gggttggggc
     2461 tttaattttt attggtgaaa aattagccat ggaaggagta attcgcacaa gcagcggagc
     2521 ggctcttgat ttacctattg tgataagcaa cgatgcttta agtgtaataa atgaactaaa
     2581 acaagtaggt ttttattttt atgcgagtga tggctcggga aaagaaattc acagtgtaaa
     2641 aataagcaat ggtaaaaaag ttttagtttt gggtagtgag ggttttggtt taagctctaa
     2701 aattgtaaaa aaatgcgatg aatgtgtggg cattgcgatg aaaaataatt ttgatagtct
     2761 taatgtcagc gctgcttttg caatactttg tgataggatg ttaaatgctt aattggaaaa
     2821 aaatacaaga attaaattta aaagaagttg cagcaaaaac gcaaattgaa cttgattttc
     2881 ttgaagcttt agtagaaaag aattttgctg ttttaagtcg ttttaatgtt aaaggttttg
     2941 ttaaaatttt gagcagagaa tacgaactcg actttagtga ttttaacgaa gagtatgaag
     3001 cttatcttaa cgaaaacaat cctactccac aaacaaaatc aaaaatgata accccaaaac
     3061 tagatgctta tagtcaaaaa tcctctaacg cttggccttt tttgattgtt cttattgttt
     3121 tagtgattat aggaagtgga atttattatt ttgatacact taaaactttt ttcaaagatg
     3181 aacaaaataa tactagcgca acagttatag atatcatagg acaagcacaa gaaaatttaa
     3241 aatctttagg tggaaacaat gttgttgtta tagacaacaa taaagcacaa gaaacaaatc
     3301 aaacagagag cgttttacca agccaaaaca tctcattaca agaaaatgat aaaaacataa
     3361 gtatagaaaa taatatcagt gaaaataaca caaccctact cgatgaagaa aaaaataccc
     3421 aaattcaaga agacacaaat acaccaaaaa ctgattcttt aaaagaagca cattttaaaa
     3481 cctctaccaa gatttggata ggtttaatag atttaaaaag ccttaaaaaa acaagctttg
     3541 ttaaagaaaa agattttaat atttctttag ataaagatca gttaatttta acaggggctg
     3601 cagctttaac aatgtttgat caagaaaata aagaacaaaa atttcctgca ggaatttcaa
     3661 aacgtttctt gattaaagat ggaaaaatta caagtatttc agctgctgaa tttgtaaaat
     3721 taaataaagg taaagaatgg taaaaaaaat tattattctt actctttggg ttaatatatc
     3781 ttttgcaatc tcaagtcttg aattagcaaa aaatttagta aacaattcta gtaaaaattc
     3841 tcaactagaa ttattatttt caaataattc ttacatagat aataatggaa attgtgatat
     3901 tgcaaaaata tctcaaatat taaaaaccaa ttctttaatt gccttaacac tatcaaatcc
     3961 tcaaagtcta agactaaatt ttaaagcaaa agctgatgaa gttatgtttt ttaaaatttt
     4021 atccgatgtt ttaacagatg ctggatatat atattttatc cctacagatt tgattttaag
     4081 agaaggaaat attgactata ccatacaagt agaatctcaa tatgttttag atcctggaac
     4141 gctttacaat ctcttaaaag aaaattctgt ctatataaat aatattaagc gtattggggc
     4201 atatgactat gaatatgatt taaatttttc caatgctgta ttaaaaacca atacaaatgt
     4261 taatttaaat actccaaaat cattagaaaa gccccttaaa gactatgtgc ttgatttaaa
     4321 aaatgctaca aatttgatta ttgatgcaaa tgatttagac aattggtttc ctaaaatctt
     4381 ctttttagat aaaaatctaa atctaattaa agcagtaaaa agcgaaaata aaaataatca
     4441 tttttcagaa cttattccaa atggtgctat atatgctatt gtaagcgata tgtatagttt
     4501 agataatata cgcaggggtt taaaaatcac acttaaaaaa taaaggatta agaaatgttt
     4561 gatgaaatcc gttttaatac catagaaaga cttccaaatt atgttttcgc agaagtaaat
     4621 gcgataaaaa tggcagcaag acgtgctgga gaggatatca tcgacttttc aatgggaaat
     4681 cccgatggta aaactccaca acacattata gataaacttt gtgaaagtgc taacaaagat
     4741 aaaacctcgg gatattctac atccatgggg atttataaac ttcgcttagc aatttgtaat
     4801 tggtataaaa gaaaatataa tgttaatcta gatcctgaaa atgaagttgt agctaccatg
     4861 ggttcaaaag agggttttgt aaatcttgca agagcgatta taaatcctgg agatgttgct
     4921 attgtgccaa ctcctgctta tcctatacat actcaagctt ttattatagc aggaggtaat
     4981 gtagcaaaaa tgcctttagc ttataatgaa aaatttgagc ttgatgaaaa tcaatttttt
     5041 gaaaatttgc ataaaacttt aaatgaaagc atcccgcgtc caaaatatgt cgttgttaat
     5101 ttcccgcata atccaacaac agtaacttgt gagaaaagtt tttatgaaag attgatagca
     5161 acggcaaaaa aagaaagatt ttatattatt tcagatattg cttatgcaga tttaacttat
     5221 gatgactata aaactccttc tattttggaa attgaaggtg caaaagatgt agcggtagaa
     5281 acttacactc tttcaaaatc ttacaatatg gcaggctggc gtgtaggttt tgtagtagga
     5341 aataaacgct tagtcagtgc gcttaaaaaa ataaaatctt ggtttgatta tggtatgtat
     5401 acacctattc aagtagcagc taccatagct ttagatggag atcaaacttg tgtggatgaa
     5461 atccgtgcaa cttatgataa aagaatgcac attttacttg aagcttttga aaatgcaggc
     5521 tggaaacttc aaaaaccaag agcaagtatg tttgtttggg caaaactccc tgaaagcaaa
     5581 agacatttaa aaagtttaga attttcaaag caacttttac aacgcgctag tgttgcagta
     5641 agtcctgggg taggttttgg cgaagcaggt gatgagtatg taagaattgc tttaattgaa
     5701 aatgaaaatc gcatacgcca agctgcacgc aatatcaaaa aatatctaaa agagtaagtt
     5761 atgaaagtag cgattcttgg ttatggcact gttggaagtg cggtggttaa atttctttta
     5821 gaaaatgata aactcattcg tgcgagatgt gggcaaagta tcactcctgt gatcgctctt
     5881 gctagaagtc ctaaaaaaaa tgctttaatt ccaattactc atagcgttga agaaatttta
     5941 aatgctgatg tagatgtttt tgtggagtta atgggtggag tggatgaagc ttttaaaata
     6001 gtgagtgaaa ttttaaaaaa ggaaaaagct gttgttactg caaataaagc tatgcttgct
     6061 tatcatcgtt atgaagttga aaatttggct aaaaatttag cttttggtta tgaagcaagt
     6121 gtggctggag gaattcctat tatcaaggtt ttaaaagaag gtttaagtgc aaataatatt
     6181 ttggctataa aagggatttt aaatggcacg agtaattata ttttaagttc tatgagtcaa
     6241 aaaaatatga gttttgaaca agccttacaa atagctcaaa atttaggtta tgcagaggct
     6301 gatccaactt ttgacataga aggacaagat gcagcacata aactgcttgt tttatcaagt
     6361 atcgcttata atcttaaagc taaacctgaa gatattttga tcgagggtat tagtgaaatt
     6421 gcacctgaag atatgtattt tgctaatgag tttgaattta ccataaaact tttaggtata
     6481 gctaaggtgc gtgaaaataa agtagaatta agagtgcatc ctactatgat agataaagaa
     6541 aaaatgcttg caaaagttga tggagtgatg aatgctataa gcattaatgg agatttgttg
     6601 ggtgaaagtt tgtattatgg agcaggagca ggaggagagg ctactgcaag tgctgtgatt
     6661 tcagatctta tggatatagc aagagatcag gtaaaagcac caatgcttgg ttttgtgaat
     6721 actttagaat acgagctttt aagcaaagat gaaatttata caaaatatta tttaagggtg
     6781 aaagttgaag ataaaatagg gattttatct aaaatcacac aattgatgag tgaaaataat
     6841 atttctatcg atagtttttt acaaaaacct aaaaaaaatg atgaaaatta cagtactttg
     6901 ttttttacta cacatttaac ttatgaaaaa agcatacaaa atttgcttga aattttacgc
     6961 aaacaagatt ttataaaaac caagcctttt atgatgcgta tagaataatg ggtgtaaaag
     7021 cttatttaga tggaatttta ggtgaagata aggcttgtaa atttttaaaa aaacaaggct
     7081 ttgaaatttt aaaaagaaat ttccattcta aatttggaga aatcgatata atagccaaaa
     7141 aagatgaaat tttacatttt atagaggtta aatttactca aaatgattat gaagtttctg
     7201 agcgtttgga tagaaaaaaa cttgaaaaaa ttttaaaaac tatagaattt tatcatctta
     7261 aaaatggaat ttcatcggat tttcagattg atctgatttg cattaaaaat gatgtgatac
     7321 aattttgcga aaatataagt ttttaagctg atatttaaaa aaataaaata caattagaca
     7381 aaaattaaag aaaggaaaaa ttatgggaaa atatattgaa ttaacaagtg ataattttgc
     7441 tcaagcaaaa gaaggtgtag ctttagttga tttttgggct ccatggtgcg gaccttgtag
     7501 aatgcttgct ccagttattg atgaacttgc aaatgacttt gatggtaaag ctaaaatttg
     7561 caaagtaaat acagatgaac aaggtgattt agcagctgaa tttggtgttc gctctattcc
     7621 tacacttatt ttctttaaaa atggtgaagt tgtagatcaa ctcgttggtg cacaatctaa
     7681 acaagcaatt agcgataaac taaactcttt actataaact aaaggctagt ataactagcc
     7741 ctcttcttaa aaatttcaaa tttatactaa ataataattt ttattaacta ctattaagaa
     7801 taatttttat atcattatta ataataaaat tcaatataaa ggaaatataa atgttagatg
     7861 tagcaatcat aggtggaggt cctgctggac ttagtgccgg actttatgca actagaggtg
     7921 gtcttaagaa tgtagtaatg tttgaaaaag gtatgcctgg tggacaaatt acctcaagtt
     7981 ctgaaataga aaattatcca ggtatagccc aagttatgga tggaatttct tttatggctc
     8041 cttggaatga acaatgtatg cgttttggtt taaaacatga aatggttgga gtagagcaaa
     8101 ttttaaaaaa tagcgatgga agttttacca tcaaattaga aggtggtaaa acagaacttg
     8161 ctaaagctgt gatagtttgt acaggttcag ctccaaaaag agcaggtttt aaaggcgaag
     8221 atgaattttt tggaaaaggt gtaagcactt gtgcaacttg tgatggattt ttttataaaa
     8281 ataaagaagt tgcagtttta ggtggtggag atacggcttt agaagaagct ttatatctag
     8341 caaatatttg ttctaaagtt tatcttatcc accgcagaga tgaatttaga gcagctccat
     8401 ctacagtaga aaaagttaag aaaaatgaaa aaatagaact cattactagt gcaagtgtag
     8461 atgaagtata tggtgataaa atgggtgtta ctggggtaaa agtaaaatta aaagatggta
     8521 gtattagaga tttaaatgtt ccaggaattt ttacttttgt tggtcttaat gtaagaaatg
     8581 aaattttaaa acaagacgat agtaagtttt tatgcagtat ggaagaaggt gggcaagtaa
     8641 gtgttgatct taaaatgcaa actagtgttg ctggactttt tgccgcagga gatcttagaa
     8701 aagatgcacc taagcaagtg atttgtgctg caggtgatgg agctgtagct gcattaagtg
     8761 ctatggctta tatagaaagc ttgcattgat tttttcttat tgtaggctag aattcctagc
     8821 ctaaatcttt atatcaacac tccttaaaaa tataaaatat tttttcataa cgttttataa
     8881 atattattaa atataattta aattatactt aattttgtta cataattata catttaaaaa
     8941 aatataaaaa tattattttt tttaaattaa tatatttttt atattaaaag ctataactta
     9001 tttatgttaa aaaaataagg aaggaaaaaa catggacaaa aaacaaagtc gcagaaattt
     9061 tcttaaagcc tcatctttgt ttgctttagt aggtgctagc gcaccaagta tggtttttgc
     9121 tcatacacac aatcaaaaca atttgaattc tactcaaaat tatcgtgcta gaattttttt
     9181 taataattct gcacaacttg atattctgag tgaagcagta gaaagaattt ttcccgaaga
     9241 tgatttagga ccaggtgcta aaaaattagg tgtagctatt tttatagata atgaacttgc
     9301 aggaaattac ggaagtggag caaaagatta tcgctttgga ccttttatac aaggaaagaa
     9361 aaatcaaggt tatcaatatc ctttaactag agctgaactt tttaaaatgg gggtaaatgc
     9421 tttagatgaa gaagcaaaac ttcgttataa aaaaggcttt gtagagctta gcgcaaaaca
     9481 aaaagatgaa gtcttaagag cttttgaaca agataaaaca aaggtttctt ttggagataa
     9541 gataaaagca agcgattttt ttacagagtt aagaagcata actataacag gagtttatgc
     9601 tgatccaatt tatggcggca atgcaaatat gcaagcttgg cgcatgaaaa aattcccagg
     9661 cgctcaaatg acttacgcaa ctcaagtttt agatggagat aaatttgaag tgatagagcc
     9721 tatttctttg gctgatatgt cacattaaag gaatacaaat ggcaaaaata cttaaaaaaa
     9781 cagatattgt tgttataggt ttaggttgga gttcttctat tgttgcaaat gaatgcgcta
     9841 aagcagggat taaagttgtc gccttagaaa gggggtggac atcaagatac ttcggatttt
     9901 ttaggtgcgc atgatgagta taaatatgta aataatgctg caatgaaaca agatttaagt
     9961 aaagaaagta tatgtgttag gaataatgat aatgaaattg ctttgccaat gagaaaaaat
    10021 tatgcttttg atgtcggtaa taatgttggt ggagcaggag ttcattggaa tggtatgagt
    10081 tatcgttttc taccttatga ctttcaaata aaatctttaa cagaagaaaa atatggcaaa
    10141 aataaagttt ctaaagaata cactattcaa gattggggtg taaactatga tgaaatggaa
    10201 ccttactacg acaaagctga aaaaatgatg ggagtttctg gagaagataa aagtcctttc
    10261 tcaggaaaaa gaaaaaattc ttatccaaat cctcctttag aaaaaacaac tatgttaaaa
    10321 aaaatttgat gaagcaacga aaaaacttgg atatcatcca tgtatggttc ctgcttcaaa
    10381 ctcatctcaa acttatacaa atcctgataa acaaagttta ggagcatgtc aatattgtgc
    10441 tttttgtgag cattttggct gtgaatatgg tgcaaaagct tctcctatag taacaactat
    10501 accttcagct ttaacaacaa aaaatttaga tattaaaact tatgctaatg tgttagaaat
    10561 tttacataaa gatggtaaag ctacaggagt aagatttgtt aatactttaa ctttagaaga
    10621 attcatacaa cctgcagaag tagtcatgct aggctcttat gttttcaaca atgctaaact
    10681 tttaatggtt tctaatatag gcgaaattta taatccaaaa acaggcaaag gaactttagg
    10741 aaaaaattat agctatcaaa tcacacctag tgttaatggt tttttcaaag atccatttaa
    10801 ttcttatctt ggagctgggg cactttgcaa ttggatagat gattttaatg gggataattt
    10861 cgatcattcc aaacttgatt ttattcatgg agcaagcttt agaatttccc aaaatggagc
    10921 aagacctata gcatcaaatc caattaaacc gggtacacct tcatggggag ccgaatttaa
    10981 aaaagcttct atttataatt atactcgatt tacttatatt ggagctcagg gtgcatctat
    11041 tccttatata ggtaattatt tatcccttga tccaacttat aaagatgctt atggactacc
    11101 acttatccgc gtaacctata attttaccaa gcaagataaa aatctttata attttatgct
    11161 tccaaaacta aaaagcatca tgcaagaaat gggagcgcaa aatatttaca cttcgccaaa
    11221 attaggagat tatggagtag tttcaaatgg ttggtatact tctacccata ttgctggcgg
    11281 aactataatg ggtacagata aaagcacaag tgtagttaat ccttatttac agcattggga
    11341 tgttaataat ctttttgtcg taggtgcagg aaattttcca cataatccag gctacaaccc
    11401 taccttaacc ttaaatgctt tagcctatcg tgctagcgaa gctattataa aatatttaaa
    11461 aactggtaat tgctaatgca gtaaattcca agccttaagc ttggaattta ttagcttcct
    11521 atcactccac catcaagttt tcttatcatc attacactag atcttggtgt ttttccataa
    11581 ggaaaagtac taccttttaa accttctcct ggatgttgta tgcctacaaa cattgtggta
    11641 taatcctcac taaaagcaat ccctgttaat tcacaagcaa taggtcctgt taaaaaacgt
    11701 ctgatttccc ctgtttttgg atttgctgct agcatgcagt tatttcccat gccttcgtat
    11761 tcatctttat tagaataaga tccatctgtt tgtatccaaa gtcttccatc tctatcaaat
    11821 ttaagtccat caggagaatt gaatttattt tcacttgtaa tattatttga gcctttatat
    11881 aagccttgtt ggttatcagg atttccagca agagcaaaaa tttcccaagt aaaatcatcg
    11941 tctttatgag aattttttgg catccatttt aaaatttgtc cataaacatt tttagttctt
    12001 ggatttgctg cattaggttc ttggcgattt ttattatttg ttagtgttgc aaatacttct
    12061 ttagaaccac tttgtttatg acttgctatc cattcacatc tatccatagg agttgcacct
    12121 acaatgcttg cagcaagacg cgtattaatg agtacttgag cttgagactt aaaaccattt
    12181 ttttcatcta ggccgttttt gccatattct aaggctatcc attttccctg tcctttaaaa
    12241 tctcccacct tgccgttaaa ctgtcctaca tacaaagtgc cttcatctaa aattttactt
    12301 gtatcagcac cttttttgta tttatgtttg ctaacaaatt tataaataaa ttcattcatc
    12361 tcatcatcac ccatataaac tataacagaa ccatcttttt ctacgataat ttctgcattt
    12421 tcatgtttaa aacgacctaa agaagttctt ttaacaggtg tgctttttac atcaaaagga
    12481 ttgatttcca ctatccaacc aaaacgattg gcttcatcga tatttttagc taaatcaaat
    12541 ctttcatcaa atttttccca tccataaaga ctagttttgt taaatccata gcgcttaaga
    12601 gagtcattaa attctagatt ttcatctaaa cttccaaaaa aatcgtcaaa attttcttca
    12661 caggtgatat aagttcccca aggtgtttgt ccatttgcac aatttgcaaa agttccatga
    12721 acaaattttt cattttttaa aacttctttt ttagctgctc cacttacttg cattttagtg
    12781 tttgcatcga ttctgcggtt atatttagaa tctaaaacca cggtccaatc atcacccttt
    12841 tttttgattt ctaagatact tacacctaca ctagcttgct cgtataaaac atcttctttg
    12901 cttaaatttt taccatgatg attaaacatg atttcaggat ttatatattc attattaacg
    12961 gctaaaattc ctctgttttt tgaaagtgaa aaaaaactca taccatcatc gttatctcca
    13021 aaaaccaaat gagcattttt aactgcattc atatcgatga ttttattttc atcataaggt
    13081 tttgctttac taaaaagtgg atcaccccaa gaaattaaaa cctttgcttc ataaccttgt
    13141 ggtactataa ctttatcttg cgtgcttgca ctaacagctt taaaacctag caaatcctta
    13201 ttcttaagca tagcagcact taaatttgaa cttgcaaaaa aagctaccat agaacctaaa
    13261 gctgaacctt ttaaaaacaa tcttctttcc atttgttttt actccatatt aaaatttaaa
    13321 acaatggaag tataaaaata tttggaaact ttttagaaac tttgatgaaa aatttaaatt
    13381 gaagggaaaa tttataccta gtttttcact aggtataaat gattaattaa aatctttt
//
LOCUS       DAEDTT010000042        13352 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.042, whole genome shotgun sequence.
ACCESSION   DAEDTT010000042 DAEDTT010000000
VERSION     DAEDTT010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13352
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.042"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1405
                     /gene="murJ"
                     /locus_tag="KLC54_000883"
     CDS             <1..1405
                     /gene="murJ"
                     /locus_tag="KLC54_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HBD9177269.1"
                     /translation="LFSRILGLARDVLIALFLGAGLYSDIFFVALKMPAFFRRIFAEG
                     AFGQSFLPNFVKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFSSFFTKLFAFGFNADTI
                     ALAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAALFNLSIVIAAFFVDKNA
                     PQNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMALSIKFKKAKAKLQGFYGNFFH
                     GVLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLALFAIALTQVSFPKILK
                     HLKSGQENLALKFMQRALAFLSILLIASSIIGSAFALEISKLLFERGNFTHEDSVITA
                     YVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLIISALCSMAFIFLIKDES
                     LKVIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLVIVALIVFTILLILIKP
                     YILSFFIGIFTSFKGVF"
     gene            1405..2793
                     /locus_tag="KLC54_000884"
     CDS             1405..2793
                     /locus_tag="KLC54_000884"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HBD9177270.1"
                     /translation="MRLLDSVAKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLANGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKS
                     EIAKQILEILNDDLNISKALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDTTLYFQWGVSKEEREEIEKLILERTEAKKNKDFNTADAIRERLSSKKITLLD
                     TPNGTIWEKINA"
     gene            2786..4528
                     /locus_tag="KLC54_000885"
     CDS             2786..4528
                     /locus_tag="KLC54_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9177271.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFAKHNDTLCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            4560..5618
                     /locus_tag="KLC54_000886"
     CDS             4560..5618
                     /locus_tag="KLC54_000886"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HBD9177272.1"
                     /translation="MAYEMIKPLLFKLNPEHAHALVEYSLRALSASFPGALSFLAHKY
                     IVDDESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VAKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            5615..6865
                     /locus_tag="KLC54_000887"
     CDS             5615..6865
                     /locus_tag="KLC54_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HBD9177273.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTRTI
                     PKIHTKEPKQDGVKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDENLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDIDPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            6858..7754
                     /locus_tag="KLC54_000888"
     CDS             6858..7754
                     /locus_tag="KLC54_000888"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HBD9177274.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYIAGLIESLEFRLPLC
                     PPSKENFAKIEEVMKKYKIKGF"
     gene            7754..8533
                     /locus_tag="KLC54_000889"
     CDS             7754..8533
                     /locus_tag="KLC54_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HBD9177275.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGVNIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDADFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQSEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(8574..8879)
                     /locus_tag="KLC54_000890"
     CDS             complement(8574..8879)
                     /locus_tag="KLC54_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177276.1"
                     /translation="MELDQILLYAFIFLNLFAFFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFVGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(8892..9488)
                     /locus_tag="KLC54_000891"
     CDS             complement(8892..9488)
                     /locus_tag="KLC54_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HBD9177277.1"
                     /translation="MQIIKQACGAYETNCYILFSEHGEIIIDPGFDALNFIKKHVKNP
                     LAILNTHGHYDHVWDNEKVKQAYQIPIYIHKNDAFMLEDPFNQGFMPSKADYLIDDEN
                     IISIGGLDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            9562..10302
                     /locus_tag="KLC54_000892"
     CDS             9562..10302
                     /locus_tag="KLC54_000892"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HBD9177278.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYTLAKYLNLHENFIKKAPSADLWENQSDEADLGFSYAKIDEGLKALETNDEKLLRT
                     LDPSLIAMLKNRMQKNTFKGKMPEILEI"
     gene            10306..11232
                     /locus_tag="KLC54_000893"
     CDS             10306..11232
                     /locus_tag="KLC54_000893"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HBD9177279.1"
                     /translation="MSEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVFYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLTQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFNFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LVTAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            11229..12641
                     /locus_tag="KLC54_000894"
     CDS             11229..12641
                     /locus_tag="KLC54_000894"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HBD9177280.1"
                     /translation="MKLVESRNVKNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLSEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNEIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNANNILSEFFNQGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILTLFDLKNS
                     DEKVFEARNIKKEILDWMQK"
     gene            12638..>13352
                     /gene="kdsB"
                     /locus_tag="KLC54_000895"
     CDS             12638..>13352
                     /gene="kdsB"
                     /locus_tag="KLC54_000895"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HBD9177281.1"
                     /translation="MIIIPARLKSSRFHEKILCDIGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKDHESGTDRINEACKKLALKDDEIIINVQADEPFIECE
                     NLLKFKEFASSCLDKKAFMASCYKKITQEEAMDPNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLSSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYERALKIYLE"
BASE COUNT         4690 a         1580 c         2466 g         4616 t
ORIGIN      
        1 tttattttca agaattttag ggcttgctag agatgtttta atagcgcttt ttttaggagc
       61 agggctttat agtgatattt tttttgtggc tttaaaaatg cctgcttttt ttagaagaat
      121 ttttgcagaa ggggcttttg gacaaagttt tttgcctaat tttgtaaaag cgaaaaaaaa
      181 aggagctttt tgtgttagtg taatgatgca atttagcctt atagtttttt tattttgtct
      241 tttggtaagt tttttttcct ctttttttac taagcttttt gcttttgggt ttaacgcaga
      301 tactatagct ttagcggctc ctttggtggc gattaatttt tggtatttgt tttttatttt
      361 tttagttact tttttaggag ctattttaaa ttatagacaa aaatttttca ttacctcttt
      421 ttctgcggca ttatttaact taagtattgt tatagctgcc ttttttgtgg ataaaaatgc
      481 accgcaaaat acactttatt atttttctta tgcaacggtt ttaagcgggg tggcacagct
      541 tattttacat ttgcttgttt taaaaaacaa tcctgtaatc cgtgctatgg ctttaagtat
      601 aaaatttaaa aaagccaagg cgaaattaca aggtttttat ggcaattttt ttcatggagt
      661 tttaggttct tctgcgactc aatttagctc attgcttgat acaactatag ctagtttttt
      721 aatgagcggg agtatttctt atctttatta tgcaaatcgt gtcttccaac tcccccttgc
      781 actttttgct atcgctctaa ctcaagtttc ttttccaaaa attttaaaac atttaaaaag
      841 tggtcaagaa aatttagcct taaaatttat gcaaagagca ttagcgtttt taagcatttt
      901 gcttattgct tctagtatta taggttctgc gtttgctttg gaaatttcaa agcttttatt
      961 tgaaagagga aatttcactc acgaagatag tgtgattacg gcttatgttt tgattgctta
     1021 tcttataggg cttttacctt ttggtttaca aaagcttttt tctttgtggc tttatgcaaa
     1081 atttaaacaa aaaacagcag cttggatcgc ggtaaaatct ttaattatca gtgctttatg
     1141 ttctatggct tttatatttt tgattaaaga tgaaagttta aaggttattg cagtagcact
     1201 ttcaagctct attagtgctt tttatttgct tggagctaat atcaaagaat ttggttttaa
     1261 gaaatttttt gctttaatat ctattaaaat ttgcttgttg gttatagttg ctttgattgt
     1321 ttttacaatc ttacttattt tgattaaacc ttatatttta agttttttta taggaatttt
     1381 tacaagtttt aaaggagttt tttaatgaga ttattagaca gtgtagcaaa agagaaaata
     1441 aaacttgata aaaaagatat tagtatttac ttatgcgggc ctacggttta tgatgatgca
     1501 catttaggac atgcaagaag tagtgtttgt tttgatcttt tgcgtagggt tttacttgct
     1561 aatggcaata gggtaaaatt tgctagaaat tatacagata ttgatgataa gattttgaaa
     1621 aaaatggctc aaagtggtca aactttagag gaaattacgg aattttatat caaaagttat
     1681 gaagaggata tgagggtttt aaatgtatta gatcctgatt ttaaacctcg tgcaacgcat
     1741 tatataacag ctatgcttga tttgattaaa aagcttgcta aggatgggtt tgtttatact
     1801 ctagaagatg gaatttattt tgatacaagt aaagatgaaa aatatttaag cctatcaaat
     1861 cgcaatttag aagaaaatat ctctcgtcta agtaatgaag tgcaaaaaag aaatgaaagc
     1921 gattttgtgc tttggaaatt tgatgaaaat ttttacgaaa gtgaatttgg caaagggcgt
     1981 ccaggttggc atactgaatg tgttgctatg attgattcta tttttgaaaa tactcttgat
     2041 atacatgctg gagggataga tttgcttttt cctcatcatg aaaatgaagc tgcgcaatgt
     2101 cgttgtggat gtaagagaaa attagcaaat atttggcttc ataatggttt tgtaaaaatc
     2161 gatggtgaaa aaatgagtaa aagtttaaat aatagttttt ttataaaaga tgctttaaaa
     2221 gaatttatgg gcgaggcttt aagattttat cttttgagtt ctcattatag atctcatttt
     2281 aattattctt tatcggattt agaaaatgct aaaaaacgtt tagataaatt ttatcgcctt
     2341 aaaaaaagat tggatttagg tgaaatttct gattttgatg ttttaaatga tattgaaata
     2401 aaaagcgaaa ttgctaagca aattttagag attttaaatg atgatttaaa tatttctaaa
     2461 gccttagctc ttttggatga ttttatcagt agtgcaaatt tagagttgga taaagaaagc
     2521 aaaaataaaa ttttaaaaca aaatatcaaa gaagctttaa gcgagctagc taaaattttt
     2581 ggctttggtt ttatggatac aactttatat tttcaatggg gtgtaagcaa agaagaacga
     2641 gaagaaattg aaaagttaat tttagaaaga actgaggcta agaaaaacaa agattttaac
     2701 acagctgatg caataagaga gcgattaagt agtaaaaaaa tcactctttt agatactcca
     2761 aatggaacaa tttgggagaa aataaatgca taatgagatg aatttaaaag aggttttaat
     2821 acgctttaag cccttttata aaagatattg gaaacaattt gctatagcta ttttcggtat
     2881 gattttagca agcggaggaa ctgctggaag tttttatgct ttagagccta ttttaaatta
     2941 tattttcgtt gaaaaaaatg aagctttact ttatacagtg ccttttttgc tagtattgat
     3001 gtattttttt aaaaatcttg gaacttattt acaaagtttt tatgtttcct ttataggaac
     3061 agatatgtta agagtattgc gtgctagggt tttgaaaaat gttttacgct tggatatgga
     3121 tttttttaaa cgctatagaa gcggagagct tgtaagtcgt tgtactaatg atattaatgc
     3181 acttcaaagc atagtatcaa acattattcc tgattttttt agagagcttt taactgctat
     3241 aggactgctt gcggtagtct tgtatcaaag tcctactttg gctttttttg ctttagtgat
     3301 tttgccttta gctatttttc ctttggtatg gtttgctaaa aaacttaaaa aatatgcaag
     3361 aaatatacaa gaaacaaatt cggatttact ttcttatttg ggtgaaattt tttcaaatat
     3421 tgaattgatc aaagctaatg ataatgaaaa aaaagaaagt gataaatttg ctaagcataa
     3481 tgatacttta tgtaaattaa acctaaaatc cgcacgtatt gatgcactta caagtccttt
     3541 aatggatatg atgggttctg ttggggttgc tgtggtgatt attgtagggg gtagagaggt
     3601 tatcaatggt tctatgagtg tgggaagttt tatcagtttt gtttcggcac tttttgcgat
     3661 atatactcct ttaaagcgtc tttcgtcttt atatggaaaa cttcaaggtg ctgttgcggc
     3721 aagtgaaaga actttttatt tattggattt agaacctcaa attaaaggtg gaagcaaaga
     3781 attaaaaaac attgaaaaaa ttagctttga aaatgttgaa tttgcttatg aaaatccgca
     3841 taaaagtgtt ttaaaaggcg taaattttga ttttgttaaa gggcaaatgc ttgctcttgt
     3901 agggacaagt gggggtggta aatcttctat tattaatctt ttgatgtatt tttatgaaaa
     3961 gcaaaaaggt aaaattttac tcaatcaaga agatattagc acttttacca tagaaagctt
     4021 acatgctaaa ataggacttg taacgcaaaa tatttatctt tttaatgata gttttgctgc
     4081 aaatattgct tatagcgaag agttagaaga agaaaaagtc atccaagctt taaaattggc
     4141 caatgcctat gaatttgtta aagaaatggg tgggatttgg gctgaagtga aagaacatgg
     4201 taagaactta agtggagggc aaaaacaaag aatagcaatc gctagagctt tatataaaaa
     4261 tcctgatgtg cttatttttg atgaagcaac ttcagctttg gataatgaaa gtgaaaaagc
     4321 aatagttaaa actatagaaa atttaaaaca agatagattg attttagtgg ttgcacatcg
     4381 tttaagcact atagaaaatg cagataaaat agtagtattg gataagggca aggtattggc
     4441 aataggtaaa gatgaagagc ttttgcaaac ttgttctttg tatcaaaaat ttaaaagcaa
     4501 agaaaaaaca aagcctagct ttagttaatt ttagttagaa tttcaaaaag gattaaaaaa
     4561 tggcttatga aatgataaaa cctttacttt ttaagttaaa ccctgagcat gcacatgctt
     4621 tggttgaata tagcttaagg gctttaagtg ctagttttcc aggagcttta agttttttag
     4681 cacacaaata tatagttgat gatgagagtt taaggcaaaa tttacttgga cttgatttta
     4741 ataatcctgt aggtttagca ggaggctttg ataaaaatgc cactatgata agacctttga
     4801 gtgctttagg atttggtttt ttagaagtgg gaacttttac tccaaaacct caagaaggca
     4861 atgaaaagcc acgcctattt agacttgtaa aacaagaaag tatacaaaat gctatgggtt
     4921 ttaacaacga aggtgctgaa aagattgctt taagacttgc aaaaacttat ccttttgttt
     4981 tgcctttagg ggtaaatata gggaaaaata aaatcactcc aaatgataaa gccttggagg
     5041 attattttac tttgtttaga gattttaagg atttgtgtga ttattttatc gttaatatct
     5101 catctcctaa tactaaaaat ttaagagagt tgcaaaatga tgatttttta aataccttgc
     5161 ttgaagaagc caaaaaaatc acttctaagc ctattttgat aaaaattgct cctgatatga
     5221 aaatagatga tgctttaaat ttatgtgaaa atgccattaa aaaaggtgca gatgggttta
     5281 tattagccaa tactagtgtt gattatagct tgctagataa taatcgtact tttggtggta
     5341 ttagcggaag gctgattacg gaaaaaagtg gtattttttt caaagaagta gctaaaattc
     5401 tttttggcaa aaccttgctt attgcaagtg gagggattga tagtgctgat attgcttatg
     5461 agcgtattaa aaatggggct aatttagtgc aagtttatac agctttgatt tttaaaggcc
     5521 cttctttggt aaaaaatatc aatcaaaatc ttatagagct tttaagaaaa gatggttttt
     5581 tacacattag cgaagctgtt ggggtaaatt taaaatgatt gcttatgaaa aaattcaatt
     5641 aaaaaacaag cttgaagttt atgctttacc tgtaaataaa aatagcgatg tgattagcgt
     5701 tgatattttt tataaagtgg gttcaagaaa tgagatcatg ggaaaaagcg gcatagctca
     5761 tatgctagaa catttaaatt ttaaaagtac taaaaattta aaagctggcg aatttgatga
     5821 gattgttaag ggttttggtg gtgtggataa tgcaagcaca ggttttgact atactcatta
     5881 ttatattaaa tgtgcgaaga aaaatttaga taaagctttg gaactttttg cagaacttat
     5941 ggcaaattta aatttaaaag atgaagaatt tcagcctgaa agagcagtgg ttttagaaga
     6001 gcgtagatgg agaacagata ataatccttt gggatatctt tattttagac tttttaatca
     6061 tgcatttatg tatcatcctt atcattggac tcctataggt ttttttaagg atatagaaaa
     6121 ttggagcatt gaagatatta aagaatttca tagtatttat tatcaaccta aaaatgcgat
     6181 tttacttgta agtggcgata tagaaagtaa agaagttttt gagctttcaa aaaaacattt
     6241 tgaaaagatt aaaaatacta ggactatacc taaaattcac acaaaagagc ctaagcaaga
     6301 tggagtaaaa agaatatatt tgcataaaaa ctcagatact gaactattag cccttgctta
     6361 taaaattcca aatttcaagc acaaagatat acctgcttta aatgctttat ccgagctttt
     6421 aggaagtggg aaaagttctt taatgagtga aattttgatt gataaattaa atttaatcaa
     6481 tgattattat gcttatgtta atgattgtat agatgaaaat ttatttattt ttatttgtaa
     6541 ttgtaacccc aatgttaatg cagaaaaagt agaaaaagag cttttaaaaa tcattgataa
     6601 acttaaaatg ggtaaaattt ctcaaaaaga tttgcaaaga gtgaaaaata atgtcaaaag
     6661 tgattttatt ttctcactta acaatgctag tgcagtggca aatatttatg gttcatatct
     6721 agcaagaggg gatatcgatc ctttgttaaa ttatgagaaa gatatacaaa atttggaatt
     6781 aaaagatttg atttcttgtg ctaaaaaata ttttattcaa gaaaattcaa ctacggtaat
     6841 tctaagaaag gattcaaatg gataaaaata ttatcattgg ggcgatgacg gcccttatta
     6901 caccgtttaa aaatggaaaa gttgatgagc aaagttatgc aagattgatt aaaagacaaa
     6961 tagaaaatgg catcgatgca gtagttccag taggaacaac aggagaaagt gcaactttaa
     7021 cccatgaaga acatagaact tgcatagaaa tagccgttga aacttgcaaa ggaactaagg
     7081 ttaaggtttt agcaggtgcg ggaagtaatg caactcatga ggcagtgggt ttggctaaat
     7141 ttgctaaaga acatggtgcc gatgggattt taagtgtggc accgtattac aataaaccta
     7201 cgcaacaagg actttatgag cattataagg ctattgcgca aagtgtagat attcctgtgc
     7261 ttttatataa tgttccagga agaacaggtt gtgaaatttc aacagatact attatcaagc
     7321 tttttagaga ttgtgaaaat atttatgggg taaaagaagc gagtggaaat atcgataagt
     7381 gtgtggattt gcttgcgcac gaacctagaa tgatgcttat ttcaggagaa gatgcgatca
     7441 attatcctat actttcaaat ggcggaaagg gagttatttc agtaacttca aatttattac
     7501 ccgatatgat tagcgcttta actcatttcg ctttagatga aaattataaa gaagctaaaa
     7561 aaatcaatga tgaactttat aatatcaata aaattttatt ttgcgaaagt aatcctattc
     7621 ctattaaaac ggctatgtat atagctggat tgatagaaag tttggagttt agacttcctc
     7681 tttgtcctcc aagtaaggaa aattttgcta aaattgaaga agtgatgaaa aaatataaga
     7741 tcaaaggatt ttaatgaata cagaatttca aggaaaaact ttagtaatca gcggtggaac
     7801 tcgtgggata ggtaaggcta tagtttatga atttgctaaa gtgggtgtaa atatagcttt
     7861 tacttataat tctaatgcac aaattgctga tgaaatggta caagatttgg aaaaaaatta
     7921 taaaattaaa gctagagctt atgaatttaa tatcttagaa cctgaaactt ataaagaact
     7981 ttttgaaaaa attgatgcgg attttgatag agtggattat ttcatctcaa atgctatcat
     8041 ttcaggacgt gcggttgtag gtggttatac taaatttatg aaattaaaac caaaaggaat
     8101 taataacatc tttacagcca cagtaaatgc ttttgttgtg ggcgcacaag aagcagctaa
     8161 aagaatggaa aaagtagggg gtggaagcat tatttctatc tcatctacag gaaatttagt
     8221 gtatatagaa aattattcag gtcatggcac agcaaaagct gccgtagaag ctatggcaag
     8281 atatgcggct actgaacttg gagaaaaaaa tatccgtgta aatgtcgtaa gtggtgggcc
     8341 tattgaaact gatgctttaa gagcttttac aaattatgaa gaagtaaaac aggctactat
     8401 aaatttaagt cctttaaatc gcatggggca gtctgaggat ttggctggag cgtgtctttt
     8461 tctttgttca agtaaggcaa gttgggtaac aggacatact ttcatcgttg atggtggtac
     8521 aacttttaaa taaaaattaa gaaaaatcaa tggatttttc ttaaaaatat ttttcaatca
     8581 agttttaatt tccatcctaa aaaaacactt aataatgcaa gtaaaaaaat aaaatttaaa
     8641 gtccaattgc caaaacctac aaaacctata gataatacgc tgtaaaaaaa tcctcccaca
     8701 gctgaataaa tacaaatcgt acttaaagat ccattttctg ccattttttt acatgggcag
     8761 attttataaa attttttatc gttaaattga tttttctttt tatttcccaa aaataaacca
     8821 aaaaaggcaa aaagatttaa aaaaataaaa gcatataata aaatttgatc taattccatt
     8881 ttaaatatac cttaaaagta tctaagccaa gagggtagat ggacttgctc ttcttttaaa
     8941 gtagtctctt gtccatgtcc tggtaaaagt ttaaaatctt ctttgtaagt cataactttt
     9001 tctaagcttt gtttcattaa atttgcatct gaataaggaa aatcccatct tcctatgctt
     9061 ctataaaata aaaaatctcc actaaacatg atatttttac ctacaatttc tatcatagtg
     9121 caacctggtg tgtgtcctgg taaaaagtga aatttaaagt caagtccgcc tatagaaatg
     9181 atattttcat catcaatcaa ataatccgct ttgctaggca taaaaccttg attaaaagga
     9241 tcttcaagca taaaagcatc atttttatga atataaatgg ggatttgata ggcttgtttt
     9301 actttttcat tatcccaaac atgatcgtaa tgtccgtgag tgtttaaaat cgctaaagga
     9361 ttttttacat gttttttgat gaaatttagt gcatcaaaac caggatcaat gataatttct
     9421 ccatgctcac taaataaaat ataacaattt gtctcataag ctccacaagc ttgtttgata
     9481 atttgcattt tttacctctt taataaaaaa tttgccttaa ataaatataa ttatacatta
     9541 aatttttaaa aggcaagctt tatggattgg caaaagatta cggaaaaaat gtgtgatttt
     9601 atacaagaaa aagtgaaaaa ttctcaaagt caaggtgttg ttttggggct tagtggcggg
     9661 attgattctg ctttagtagc aacgctttgc aaaagagctt taaaagagaa tgtttttgct
     9721 cttttaatgc caactcaaat ttcaaataaa gccaatcttg aagacgcttt aaggctttgt
     9781 gcggatttaa atcttgaata taaaatcata gaaattcaaa gcattttgga tgcttttata
     9841 aagcaaagtg aaaataccac tctagtatct ttgggaaatt ttgcagcgcg tattagaatg
     9901 agtttgcttt atgattattc tgctttgaaa aattctttag tcataggcac ttctaataaa
     9961 agcgaattac ttttgggtta tggtacgatt tatggagatt tagcttgtgc ttttaatcct
    10021 ataggatcgc tttataaaag tgaaatttat accttagcaa aataccttaa cttgcatgaa
    10081 aattttatca aaaaagctcc aagtgcggat ctttgggaaa atcaaagcga tgaggcggat
    10141 ttgggttttt cttatgcaaa aatcgatgaa ggtttaaaag ccttagaaac taatgatgaa
    10201 aaacttttaa gaacgcttga tccttctttg attgctatgc taaaaaatcg catgcaaaaa
    10261 aatactttta agggaaaaat gcctgaaatt ttggaaattt aaacaatgag tgaagaaaaa
    10321 aattatgaac tttggcttga taattatttt tttaagccta atttttggca aaaatgcctt
    10381 gcttttatac ttttaccttt aagtgtgttt tatgcttttt ttgcgatttt aaatactttt
    10441 tttcgtaaaa aaatagtttt taaaaagcct gttattagcg ttggtaattt aagttttgga
    10501 ggtaatggaa aaaccccgct ttgtaaagct atagcaaggg aatttgatgg cgtttttata
    10561 gtgcttaggg gctataaaag aaagtctaaa ggtttgtttg ttgttaaaaa tcaaaatgaa
    10621 attttatgca ccttaacgca aagtggcgat gaagctatgg agtatgcttt tgaagaaaat
    10681 atcaaaggtg tgattgtgag cgaagataga gtaaaaggta ttgaaaaagc ttttgagttg
    10741 ggagctaaaa tcgttgtact tgatgatgct ttttctaaat ttcatattaa aaaatttgat
    10801 attttacttg aaagcaaaat caaaccttat tttaatttta ccttgccaag tggagcttat
    10861 cgtttgccga aattttatga aaaaagggct gattttattg cattagaagg cagggatttt
    10921 gtgcgttatt cttttgtaaa agaaaatcca aaggctgttt tggtaactgc tattgctaaa
    10981 ccttttagat tgtatgagca ttttatcaaa gcaagggctt gttatttttt taaagatcat
    11041 tatgagttta aaaaagaaga attagaaaat ttgctaaaaa aacataattg cgatacacta
    11101 atgcttactt ttaaggattt tgttaaagtt aaagattttg gttttaaatg tcaaattata
    11161 gaattaaata tagaattaaa agattcatta agagaaaaaa taaaaactta tatcaaggag
    11221 tttgaacagt gaaattggtc gagagtagaa atgtaaaaaa tgtatcaagt tttaaggaag
    11281 ctttgattaa cccaaacgcc ccagaaggag ggctttactc acctttaaat ttgcctattt
    11341 ttgaaggaga aaaatatgcc aatttgtctt ataaagattt tgctttaaag cttatagaaa
    11401 gttttggttt tggcgaagaa gagcttttta aaaaggcttt gaaaagttac gaaagctttg
    11461 atgataaaaa tacacctatt tctttgcaaa aaatctctga aaaaacctat attaacgagc
    11521 tttggcatgg acctacaaga gcttttaaag atatggcttt gcagcctttt ggcgtgcttt
    11581 taagtgaatt ttcaaaggat aaaaatattt taattatttg tgctacaagc ggcgatacag
    11641 gacctgcaac cctaaaaagc tttgaaaatg caaaaaatgt taaagtagct tgtatgtatc
    11701 caaaaggtgg cacaagtgga gttcaagagt tgcaaatgcg agctttagat aaggataact
    11761 tgaaagtttt tgccatagat gaggattttg acgcagcgca acgcacttta aaagaattgc
    11821 ttttttcaaa agattttcaa aatgaaatta aagctttaaa ttatgagctt tgcgcagcta
    11881 attctgtaaa ttttgggcgt attttatttc agattattta tcattattat gcgagtttaa
    11941 aactttttaa tgagttttta gaagaagtac aaatcatcgt tccaagtgga aattttggca
    12001 atgctttagg agctttttat gctaaaaaaa tgggagctaa aatttcaaaa atcaaaatcg
    12061 cttcaaacgc aaataatatt ttgagtgaat tttttaatca aggcgtttat gatttgcgtg
    12121 aaaaaagtct taagaagact atttctccag ctatggatat acttatttca tctaatatcg
    12181 aaagactttt gtttgcgaaa tttaaagata aaagaactaa agaactgatg aatttgttaa
    12241 aaaatgagag atattttaaa cttgaaaaag aagaattaca aagtttgcaa gaagattttg
    12301 aggcggattt ttgcaccgat gaagaatgta tgcaatttat caaacaaagt aaaattttaa
    12361 ttgatccgca taccgcaact tgttttaaaa tgcttgatcc tttaaaacct agcattatca
    12421 cttctacagc agaatggaca aaatttactc caagtatgat aaaagcttta tatgataggg
    12481 attctaagaa tgaaaaagaa gatttaaaat ttatagctaa agagtttaat gtccaagtta
    12541 aagatgaaat tttgacttta tttgatttga aaaatagcga tgaaaaggta tttgaagcca
    12601 gaaatataaa aaaagaaatt ttagattgga tgcaaaaatg attattattc ctgcaagatt
    12661 aaaatcaagt cgttttcatg agaaaatttt atgtgatata ggtggagtgc ctatgtttgt
    12721 ggctactgca agaagagtaa gtagcgtgga tgaagtttgt atagctttag acgatgaaaa
    12781 ggttttaagt atcgctaaag aatatggtct aaatgcggtt ttaacaagca aagatcatga
    12841 aagcggtacg gataggatta atgaagcttg taagaaacta gctttaaaag atgatgagat
    12901 tattatcaat gtccaagctg atgagccttt tatagaatgt gaaaatttat taaaatttaa
    12961 agaatttgca agttcttgct tggataaaaa agcttttatg gcgagttgtt ataaaaaaat
    13021 cactcaagaa gaagctatgg atcctaatct ggttaaagtg ctttgcgata aagaagggta
    13081 tgctttgtat ttttcaagag ctaaaatccc ttatgaaaga gaaaattacg aggaaagttt
    13141 taaagggcat ttaggcattt acgcttatag tgtaaaagca ttaagggagt tttgttcttt
    13201 atcaagttct gcgcttgaaa gagcggaaaa gttagagcaa ttaagagcta tagaaaatgg
    13261 taaaaaaatc aaaatgcttg aaatttcaac aacaagcatg gggattgata ctaaagaaga
    13321 ctatgaaagg gctttaaaaa tttatttaga aa
//
LOCUS       DAEDTT010000043        13297 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.043, whole genome shotgun sequence.
ACCESSION   DAEDTT010000043 DAEDTT010000000
VERSION     DAEDTT010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13297)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13297)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13297
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.043"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..456)
                     /locus_tag="KLC54_000896"
     CDS             complement(<1..456)
                     /locus_tag="KLC54_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HBD9177282.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVDIDAQILQKPFLPTDFLNLLNNKDTNKHT
                     SIDLPILSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDD"
     gene            complement(513..1280)
                     /gene="fliR"
                     /locus_tag="KLC54_000897"
     CDS             complement(513..1280)
                     /gene="fliR"
                     /locus_tag="KLC54_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HBD9177283.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITSQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            complement(1267..1902)
                     /locus_tag="KLC54_000898"
     CDS             complement(1267..1902)
                     /locus_tag="KLC54_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9177284.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLALNTKDCIAIQGSSGCGKSTL
                     LHIFSSLLIPKKGEVFFKGSSLYQIDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQNLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDNKLASFCDKTYTINANGIC"
     gene            complement(1915..2988)
                     /locus_tag="KLC54_000899"
     CDS             complement(1915..2988)
                     /locus_tag="KLC54_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HBD9177285.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSIINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(2988..3779)
                     /gene="rpsB"
                     /locus_tag="KLC54_000900"
     CDS             complement(2988..3779)
                     /gene="rpsB"
                     /locus_tag="KLC54_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HBD9177286.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAMSEEDFGEEQE"
     gene            complement(3895..5058)
                     /locus_tag="KLC54_000901"
     CDS             complement(3895..5058)
                     /locus_tag="KLC54_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HBD9177287.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQSAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQ
                     KQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLK
                     EGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQ
                     NYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNKVLDK
                     VREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
     gene            complement(5184..6308)
                     /locus_tag="KLC54_000902"
     CDS             complement(5184..6308)
                     /locus_tag="KLC54_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HBD9177288.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGITANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKVALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVLLSIFAIGWKRSVWSKLH"
     gene            complement(6305..7555)
                     /locus_tag="KLC54_000903"
     CDS             complement(6305..7555)
                     /locus_tag="KLC54_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HBD9177289.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFITGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            complement(7557..8060)
                     /gene="petA"
                     /locus_tag="KLC54_000904"
     CDS             complement(7557..8060)
                     /gene="petA"
                     /locus_tag="KLC54_000904"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HBD9177290.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            complement(8150..9436)
                     /locus_tag="KLC54_000905"
     CDS             complement(8150..9436)
                     /locus_tag="KLC54_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HBD9177291.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     AYFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILHFSREKNQEKIYISTKKLM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVMVFVLYVRVLPKRLEF
                     KLVKKEQISSKLFFLCIVFLFLFVISFFIGEIFDIKISFFALLWAGIFWLIVLKIQGK
                     KSIKILFEAPYGVLLFSFGLYMVVFALHKIGVSEILVKSYTFLMQDKSGIFGVALISA
                     FGSSVFNNLPMVLIGDLALKEYFENFSFDSLMIYAHLLGVNIGPKLTPIGSLATLLWL
                     GVLARKGINISFWQYCKFGFLITLPVLVFSLFALIV"
     gene            complement(9437..11296)
                     /gene="mnmG"
                     /locus_tag="KLC54_000906"
     CDS             complement(9437..11296)
                     /gene="mnmG"
                     /locus_tag="KLC54_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HBD9177292.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     ARNKLLKLPNLEISQEQASVLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSKNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQIQMLRSVKGFEDAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPMFETMDNYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            complement(11382..11879)
                     /gene="cetB"
                     /locus_tag="KLC54_000907"
     CDS             complement(11382..11879)
                     /gene="cetB"
                     /locus_tag="KLC54_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HBD9177293.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDINNNI
                     IGYYSVRRMPNKSAISTIESLYGDLLRVEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            complement(11897..13276)
                     /gene="cetA"
                     /locus_tag="KLC54_000908"
     CDS             complement(11897..13276)
                     /gene="cetA"
                     /locus_tag="KLC54_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HBD9177294.1"
                     /translation="MVKNGLLLTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAITHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESNQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
BASE COUNT         4645 a         2516 c         1625 g         4511 t
ORIGIN      
        1 atcatcatca aaactcaaat cttccattcc ctctgaattt atatctaaag aattttcatc
       61 aggcaaatca tctaaattta aattatctaa atccaagctt atatcagcat aaggattttc
      121 atcattactt aatattggca aatcaataga tgtatgtttg tttgtatctt tattattaag
      181 taaatttaaa aaatctgtag gtaaaaaagg tttttgtaaa atttgtgcat ctatatctac
      241 attttgattt cgcggggcta aaaaaatcaa tctatcacat ttttctttaa gaatttttaa
      301 aggtgctgga gtatcactat ctacgacaat cacatcataa ttacccaaat tttcactata
      361 agcattaagt tcttcaaaat cataagacat ttttttagca ctaaggctta caagtcttga
      421 aactacaggg ttttcattta aaagtaaaat tttcatcact ttaatccttg aaaaataatc
      481 actattttac gataatttca tttatccttt ccttaggaga aaaaaagagt ttgcatatga
      541 gtgaaaagtt ctaaaattaa atttttaaaa tattgcatca taactaataa aatagcgatc
      601 aaaactacaa agcctaaagc tatctttata ggatagccaa taactaaaag attaaattgt
      661 ggcattgttt tcatcaaaag tccaaaaata acatcagcta aaagtgaaat tccaagtata
      721 ggaaagctca tagtaaaacc tatgatgaaa atattaaaca tacccatatt tagataatgc
      781 attaaattct catgcggata aaagccacct aaactgatat aacctaaaga atgacttaaa
      841 aacaaaagca ttaaatgatg accatcaaaa gcaagaaaaa acatcaaagc aagcaaattt
      901 aaaatttgag atgtgatagg catactcgtt ccagaacttg gatctaatat acttgccata
      961 gtaaatccca tagtaaaagc aatctgctca cctgccatca taataatagc aaaaataatt
     1021 tgaagcatta atcctgctat cattccaaaa atcacttcac taataagctg taaaacaaaa
     1081 aaactatcta aatgcaaaga ttctaatcta gccaaaggat ataaatacat agtcaaaaat
     1141 aaaactatag tactttttat caccatagga atagaattat gtgaaaaaaa aggaaaaaaa
     1201 actataagac cactcattct agcaagaagc aacataaaag ttacaacatt tttatcacct
     1261 aaataattaa caaattccat tggcgtttat agtataagtt ttatcacaaa aacttgcaag
     1321 cttgttatcg tgagttacaa aaaataaagc tgcatcattt tctttaacat aggatattaa
     1381 aagctcgata acatttttag cattatcaaa atccaaattt ccagttgctt catcagcaaa
     1441 aataatcttt ggttttttac aaagcacgcg cgcgatactc acacgctgtt gttgtccgcc
     1501 gctaagcttt cctatttttt gatgtaaaag cgtatcaata cctaatcttt ttaaaatttt
     1561 ctcatctaaa ttttgacccg ataaaacact agcaagttcg atattttcta aagctgaaaa
     1621 acctttaaaa agataatgtg tctgaaaaat aataccaaaa tcataacggc gaatttttaa
     1681 tctttcgttt tcatctatct gataaagact agaaccttta aaaaaaactt cacctttttt
     1741 tggaattaat aaggaagaaa atatatgcaa aagagtagat ttgccacaac cgctactccc
     1801 ttgaatagca atgcaatctt tagtatttaa agcaagattt aaaccctcaa aaagcggata
     1861 atcaaaacta tggcttaaat tttccgctct taagagttcc atttttaacc gtttttaaag
     1921 ttgtgcagca acttcagccg caaaatcttc agttttcttt tctaaacctt cgccaacttc
     1981 aaagcaaata aattcgacaa ttttaatttt tccgccaaat tctttttctt tttcagcgat
     2041 cacttgttct acggtttttt tatcatccat tacataaaac tgacccatta aagtaagttt
     2101 gctatcaagt tgagaattat ctgctataaa gctattcatt ttacctggga taatattatc
     2161 ccaaattttt tcaggtttac cttgagcttt aagctcttct ttgatttttt cttcagcttc
     2221 ttttaaaatt gcatcgctta attgtttgcg acttgcaaat tgaggaattt tatgttcagg
     2281 tttatttgga tctttaagtc tgcgtctttc ttcattttct ttttcaagtt cagcaaccaa
     2341 agctttgtat tcattttcaa caaaagtcat atccaaatct tcataactta aataacttgg
     2401 tctcattgct gcaatatgca tacaaatttg tcttaacaaa tctcttgatt ttgaagccac
     2461 ttcagcgcta tcacaagctg cagcgatcac aacaccaaca cggccatttg tatggatata
     2521 accatttaca acaccgttag cacctgcttt taaagttgca aatcttctta caactaagtt
     2581 ttctcctata gttgcaattt gactttttaa atattcttca aattttacgc cattgattat
     2641 gcttgaatga agttcttcca cactttgtaa gctattactt tgaatatggg ctgtggtatc
     2701 ttttgttaaa gcgataaact gatcattttt tgccacaaaa tctgtttcgg aattaatctc
     2761 acttacagtt gcacttgtaa aatcatcact tacttttaca cttactaaac cttctgcagc
     2821 aagtctatct gcttttttag cagccttacc taaacctttt tctcttaaaa gttgtactgc
     2881 tttatcaaaa tctccattag tttcactcaa agcattttta caatccatca tccccgcgcc
     2941 tgtactttcg cggagttctt ttaccattgc agcagtaatt tcagccatta ttcttgctcc
     3001 tcaccgaagt cttcttcgct catcgcttca tctaaaactt cttttttctc ttcatcggtg
     3061 atttcttttt cttcatttgc taaagcttcg ccatcttgtt ctcttaaagc ttttccttca
     3121 ttaatcgctt cagccatttc ttggcagaaa agttgcactg aacggattgc atcatcattt
     3181 cctggaatag gataagttac caagtcagga tcgcagtttg tatctagtgg agctacaaca
     3241 ggaattctta atctatttgc ttcttgaaca gcaatttttt cttttactgt gtcaataaca
     3301 aaaatcatat caggttgagt tttcatataa cgaattccac ctaaataagc taataatttt
     3361 tctttttttc ttgtaagcat taaagcttct tttttagtta aaagtttaat acttccatct
     3421 tcttccattt tttcaattac ttctaatttt ctaattgatt ggcgaatggt accaaaattt
     3481 gtcatcatac cgccaagcca tctatgattt acataaggca taccgcattt ttcagcgtat
     3541 tctttaatcg ctccacctgc ttgttttttt gtcccaacaa aaagtatagt ttttccttca
     3601 gcagcagcgt cacgaacgat attataggta tatctaaaat atcttaaagt tttttgtaaa
     3661 tcaattacat aaataccttt tctctcgcca aaaatgaatt ttttcatctt tggattccag
     3721 cgtcttgttt ggtgtccaaa atgcacaccg cattctaata aatctctcat actaaccatg
     3781 agtttctcct tataaattta gctttattcc tccacatccc ttaatttaca caagctaaaa
     3841 aggattgatg tgtgtgaaat gaagctaaga ttttatcaaa tttaagttta gtttttactt
     3901 atatatgtag tccttggtaa gacttagatt attattgatt tcttttgtga ttaaaaattg
     3961 aaacaaatcc acgcttccaa cacgaaaagc agaggcacaa gaacgaaggt acaaatccca
     4021 cattcttata aattcttcat catatttttc ccttaccttg tctaatactt tgttaaaatt
     4081 ttcatcccat aaatctaaag tttttgcata gtgcattctt aaactttctg ctaaaagaag
     4141 atgaaaatcc cactcgctca tagcacttac aacctctctt aaagaaggta aatatcctcc
     4201 tggaaaaata tatttatcta tccaagcatt tgtttttcct tcaaacatgg ctaaaataga
     4261 atgtaaaagc atagaacctc caggttttaa cacttgtttt actttcatga aataaagtcc
     4321 taaattctct ttacctacat gttcaaacat acccacagaa acaactttat caaaataatt
     4381 ttcaaattct aaatcttgat aattttgaag tcttatttct attttatctt caagaccaag
     4441 ttcttttact ctttccttag cttttttaca ctgctcctct gaaatagtaa ttccaacaac
     4501 cttaactcca tacttttgag ccgccataat agaaagccaa ccccagccac aacctatatc
     4561 taaaagcttt tctccttctt ttaaatcaag ttttttaagg gtatgttcta ttttgttaat
     4621 ttgagcttca taaagagtat tattaggctc tttaaaataa gcgcaagaat agctcatagt
     4681 atcatcaagc caaagcttat aaaaatcatt acctatatca taatgacttt taatattttt
     4741 actttcctgt ttttgggcta ttttactcaa gatatcctct gtatttttta aaaaacgctt
     4801 atttgaaaaa taatacaaaa ctttagctat ttcatcataa tcaccttcta tttctagttt
     4861 agactccata taatgttttg caaaaactaa actcgtatca ctaaataatt ttaaaaaagg
     4921 tattttttct ttgaaaatta aagaaaattt agcagactga ttacccacat gaaattcttc
     4981 ttgatcccaa aatacaattc taaaatttcc ataattccat tttgaaagaa taaatttaat
     5041 catttgtttt tcaagcatga catactccaa ttaataataa ttattattag atagtatctc
     5101 ttaattaggt ttaaaaatta ataaaaatga agaaaaaata agatttttgc cattatcact
     5161 aaataatggc aaaaaatgta atattaatgt aatttagacc aaacagaacg cttccaacct
     5221 atagcaaaaa tacttaaaag tacaaagaat atcattacat aaattcctgt agtttttctt
     5281 tcttctttct tgctatcacc cacttgatca atataagata caaccttagc ctgtgcagct
     5341 tctgttaaac ctactcttgg catagcggtt cctggaagaa gtttttgagt gttattaata
     5401 aaatcatgta aatattgctc accacgagat cttatcatca tagaaagatc aggcggaaca
     5461 gaacctaaat aagtttttaa atcattttga tttgatggag taaaaaagct atcgtatttc
     5521 atatcatgac aacgtccgca agcctcaata aaagttgctt tatctttagc aaattttata
     5581 tctttttcca ttaaagccac tttttgagca ctattttcca ttttagcata ttttgcctca
     5641 acatctttct taatagtagc atcttcattg gcttcaaatt taacactcac atctttaaga
     5701 taagcaatta cattggctat atttgcattt gtagcttctt cactttctcc tgaagtatct
     5761 ttattgtaag ctgtcataat aaaagcatca ccaaatttat gatctacttt taaagcaagc
     5821 gcaggatgca taatcaaagc agctaaaaat ttttcatcaa aaatagcacc agctgcacta
     5881 agatcaggtg gtattactcc catagaagaa tcagtaatat tagctgttat tccatcttct
     5941 tttacaccat gacatgcaaa acagttattt tcaaaaaatt ctttaccttt ttttgcatca
     6001 cccttagcaa aatcgatctt tgcaacatct gcccaaagtg tttcaacttt gcttaattct
     6061 tcttttgctt tttcaagttc tttgtttgca ctctctattc ttttagcatc tcctgaagct
     6121 tgtgcatctt ttagagctaa ttctttagct tcaactatac cttttgcaaa agtagtatct
     6181 tcaacagcaa aatcaaaatt tgcaggagca acatgaggtt tcatcactga atgagcataa
     6241 ggctctaccc cccaatatac aagcgcagta aaaactacca caactaaaaa tatttttatt
     6301 tctctcattg tttagctcct tttctctcca taatagtaat aaccggtaaa actacaataa
     6361 gtaaaagtaa aaatactata gaagcataaa atcctaccca agcatttaca cctgttggag
     6421 gtaattttcc ataaactgtt aaaacaatta aatcgataag caatatccaa aaccaaatga
     6481 aaaataaagg tctttcatga gccggtttta caacatcact tctatcaagc caaggaagca
     6541 agaagaaaat cacttgagca ataccaaatg cagccaaacc tatatcaaaa gctttaatac
     6601 ctgcaatatc aaagaaaaat cctcttaaaa cttcataact ccataagaaa taccactcag
     6661 gataaatatg agctggtgtt ttaagcgcat tagccggatc aaaattaatt ggatccattg
     6721 caaattcaaa tttaaaacag accaaataaa agaagaaaat cataaaaaag cttatataca
     6781 taaaatcttt tgataaaaat cctggccaaa aaggaatcac tttagaaccc tttgtgtcac
     6841 ctgccatgta tttttcagcc tctaaatcaa agtcaagttc ttcagaaatt tcattattaa
     6901 catgaggaat tcttaaagaa tagaagtgaa atgctataat agcaatgata actataggaa
     6961 gcaagcacac atgaagcata aaaaatcttg ttaaagttgg atcagaaacc gcataatctc
     7021 cacgaatcca aatcacaagc tcagggccaa taaatggtat ccctccaaaa agattagtga
     7081 ttacttgagc tgcccaataa ctcatttgtc cccaaggaag catataccca ctaaaagctt
     7141 cagcagaaaa tacaacaaac aaaagcatac cgctaaccca aatcatctca cgaccttttt
     7201 tataagaacc gtaataaatt cctgttagca tatgtatgta tataatcaaa aatacaacag
     7261 aagcggcaac accatgcatg tgacgccaaa gccatccata atccacctct tgcataatag
     7321 tcttattcac actatcaaaa gcaagcgcag tatctggttt ataatacatc acaagtaaaa
     7381 gtcctgtaat aaaaagcact gcaaatagag tggttaaaat aacccccatt gcccaaagaa
     7441 agttaatttg ctttggtatc caatacttta ccattaaaac atcaagcagt ttatgtactg
     7501 caagtctttg atcaagccaa tctacaaggc cattagcttt tctaatttgt gccatcttaa
     7561 gcctccgcta tcattttttt atattcagga ccctcttcac ctaaaacaag tttggttcca
     7621 tcaatcttaa aaggaggaat ttcaagaggc tttggaggag gtccaaagac attttttcca
     7681 cttgtgtcaa attctccacc atgacaggca catttaaaca attgctcact tggttggtaa
     7741 gcaggtatac aacccaaatg cgtacaaagt cctataacca cagtataagc tgcgttatct
     7801 accacaacat cacgtttttc atcttttggc atactcgcat ctttttttaa tataaaaata
     7861 ggctttttac gccattctat agttctaagc tctccatctt gcattcctga taaatctact
     7921 gtagtaaaac ctgcagcttt gacacttgga agcggatccc aagttttttt catcgcaaca
     7981 agcgagaaaa caccgcctac agcagctacg cttccaaatg caaagcccat aaagcttcgt
     8041 ctactctcag atgtagccat aacttgtcct ttcgatttta ttttttaacc aagttaaaag
     8101 tttatcgaaa ttaaaataaa ttttttcttt gtttaacaag ttttgatatt tagacaataa
     8161 gagcaaaaag agaaaaaaca agcacaggta aagttatcaa aaagccaaat ttacaatatt
     8221 gccaaaaaga aatattaatg ccttttctag ccaaaactcc aagccaaagc aaagttgcca
     8281 aagaacctat tggggtaagt tttgggccta tatttactcc taaaagatgc gcataaatca
     8341 tcaaagaatc aaaagaaaaa ttctcaaaat attcttttaa tgccaaatct ccgattaaaa
     8401 ccataggcaa attattaaac acagaagatc caaaagccga aatcaaagcc actccaaaaa
     8461 ttccactctt atcttgcatc aaaaaagtat aacttttaac caaaatttca ctcacaccta
     8521 ttttatgtaa agcaaaaact accatataaa gcccaaaact aaaaagcaaa actccataag
     8581 gtgcttcaaa aagaatttta atactttttt taccttgaat ttttaaaaca ataagccaaa
     8641 aaattcccgc ccaaagcaaa gcaaaaaaac ttattttaat atcaaaaatt tcacctataa
     8701 aaaaactgat cacaaaaaga aataaaaata ctatgcaaag aaaaaacaac ttcgatgaaa
     8761 tttgctcttt tttgactaat ttaaattcaa gccttttagg caaaactctc acataaagca
     8821 caaaaaccat aactatagta gaaagtaaaa caaaaaaatt gggcaaaaac atatttttag
     8881 caaattctaa aaattctatc ttaaaataat ttgctgtaat gatattggtt aaatttgaaa
     8941 taaccaaagc atttgaactt gcatcacata aaaaagaaag actaagtaaa aaagaactta
     9001 aaataaaagc atgattttta caatctttaa gagttgaaaa taaagctata ataataggtg
     9061 taatgattaa aatcgctcca tcgttagcaa aaaatgcaga aagaaaaaag acaaaaatca
     9121 acaaaaataa catcaatttt tttgtgctga tataaatttt ttcttgattt ttctctctag
     9181 aaaaatgcaa aattttactc gcaataaaat caaaaaatcc caaagcttcc aagctaaaag
     9241 aaagaataat caacccaact aaagttaaag aactatccca aaccaaagaa aaaacaaaat
     9301 aagcgtcttt aaaatctacc aattgaaaaa taaaaacaaa aaaagccccc aaactagaaa
     9361 atacccaaat aggtaaattc catggacgcc aaaaaagtaa aactaaagta gataaaaaaa
     9421 taaaaaaagc aagcatttaa gcttttttct tttgcatttt gatataaatt tgtaaaatat
     9481 ctaacgctgc aggagtaatt ccactgattt gacttgcagc aaaaatggtt ggaggtttat
     9541 gatgattaag cttttctaca acctcattac tcaaaccact tacactttta aaatcaaaat
     9601 tttcaggaat tttaagctca ctaagatttt tcattttttc tacttgagct ttttgcatgc
     9661 tgatataatg ataatacttt gcctcgttta aaatttctct taaagaataa ttatccatag
     9721 tttcaaacat aggatcaagt ttttttaatt tttctatatc aaaacttgct cttgcaacaa
     9781 ttttttgaag attgactata gaagaaattt tatcttctcc taaactctct aaaaaagcat
     9841 tattttggtt attaggcgta aattctttag aaagtaaaaa ttcaagtcct ttttgaagat
     9901 tgtttgcaat attttgtata taagtaaaat cttgctcgct taaaagcccc aaatcatagc
     9961 catattttcc aagtctaagt atagcatttt cttcccttaa aagcagtcta aattctgctc
    10021 ttgaagtaaa cattctataa ggttcttttg taccttttac taccaaatca tcgattaaaa
    10081 ctcctatata agcttcatca cgccttaaaa tcaaaggctc tttcatatct atacttaaac
    10141 ttgcattgat tcctgccata aagccttgtg ctgcagcctc ttcataacct gtagttccat
    10201 taatctgtcc tgcacaataa agatttttaa tctttttaag ttctaaagta tgcttaagtt
    10261 cagttggctc tatataatca tattctatag cataaccaaa acgggttatt ttagcatctt
    10321 caaaaccctt tacagaacgc agcatttgaa tttgtacctc ataaggcaaa gaagtagaaa
    10381 aaccgttgat ataatactct gtcgcatcga tagtttgagg ttctataaaa agatgatgac
    10441 tttctttgtc gctaaaacgg ttgattttat cttctataga aggacaatac cttggcccta
    10501 caccttcaat ctgtcctgta aaaagtggag cacgataaaa attattctta ataatctcat
    10561 gtgtagttgt attagtgcgt gcgatataac aaggaagttg agtaggattg aaattttttg
    10621 aacgaaaact aaaagcttta ggatttacat caccatcttg aatttcaagc acgctaaaat
    10681 caatgctttt tgcatccact cttgggcaag ttcctgtttt taaacgcccc attttcaaac
    10741 ccaaagtttg tagataattt cctaaattta ccgaagcaag ctcccctacc cttcctgctt
    10801 gaagtttatt ttcacctaca tgaataagtc catttaaaaa agttcctgtt gttaggatca
    10861 cttttttggc aaaatatgta ttttctaaat ttgtttttac gcctttaact tcatcatttt
    10921 ctacgattaa aacactcgct tgttcttgag agatttctaa atttggaagt tttaaaagtt
    10981 tattacgtgc aatgatacgg tatttatcca tatcaatttg tgccctactt ccttgaacgg
    11041 ctacaccctt actctcattt aaaatgcgaa attgtatccc tgcttcatcg gtgatttcgc
    11101 ccataagacc acccatggca tcaagttctt ttaccaaatg ccctttagca agccctccta
    11161 tagccggatt acaacttgcc gctcctattt gctcaatcaa tgtagttaaa agtaaagttt
    11221 ttttacccat tctagcagca gcagcacttg cttcaacacc tgcatgtcca ccacctataa
    11281 caatgacatc aaacatattt tgccttgaaa aatgtgaatt ttaaagaaag attatataat
    11341 atttagactt aaaacaaact cgttttaagt ctaacaaaaa tttatttagc ttcttgaaga
    11401 gagaagatta gctcattata agttttatct gcatctttac agaaattttt aagcatctca
    11461 acacccttat ttaaaccttg ttgctgttct actcttaaaa gatcaccata aaggctttct
    11521 attgtagaaa tagcgctttt atttggcata cgacgaacgg aataatagcc tatgatatta
    11581 ttattaatgt ctattgatgg agttacattt gcaaaaaccc agtagtaatt gttatctttg
    11641 gttttgtttt ttacgtaagc aaaaatttct ttgccttctt tcatataatc ccataaatat
    11701 ttaaaaacag tttttggcat ttcttcatgt cttactatgt tatgaggttt atttaaaact
    11761 tcacccatag tataacctgc atactttaaa aaatcatcat ttgcataaac tattttacct
    11821 tttaaatccg ttttagaagt aattaaacta tcttcttgta aaaaaatttc tcttgacatt
    11881 ttcccaccct cttaatttat atttttaatt ttgctaagat ttcagcactt ctttgctcta
    11941 gtgatttaat atcatttaca atcgcatcat aagctttttg atcgatataa tcttgatttg
    12001 attcttctat tgctttttta gcgttatctt ttataaattc tttagctaaa tttaactcag
    12061 tttcagaact aagctcatta ataacacctt gagctctctc atcttgacaa agattagaaa
    12121 ttggatctac actttcaaga ttgaaatttt gagccccatt taaatttaaa tatatatttg
    12181 atttataaag aatatgatcg attttaacca cagacaaaat caatctcttt gcaaaggatc
    12241 caaaattaac accaagcgca ctactatttt cttctagacg tttaaaagct tgagaaaatt
    12301 tattaattct ttcttcagat tcactaacaa tgttaaaaac ttgctcactg ccactttgga
    12361 tatttacaaa atcttgttgc atagtctgaa ttgcaataga aatttcgctt gtagatcttt
    12421 gagttctttc tgctaacttt ctaacttcat cagccacaac cgcaaagccc ctaccatgct
    12481 ctcctgcacg cgcagcttca atagcagcat ttaaagctag aagattggtt tgatcggcta
    12541 tatcgcgtat tacttcaacc actgaagtaa tattttggga attagccaca aaagtttgca
    12601 ctgtttcctt gctcgaattt acaacatcca ttaaagaacc catagcactt tgcaaagaat
    12661 ccacctctga gccattttct gtagctgtat gagtaatggc atcaactgta tcatatacat
    12721 ttttcatcat gctaatatct tgatttaatg agctagaaat ttgagacatg tctttatttt
    12781 gatttccaag gcttaaatcc attaaagttc ttgataaagc atttttaaaa gtagatcttg
    12841 ctgtcacttc tatgtttgct aaagctttat ttataaattc gatattatga gcaaaaattc
    12901 cttttaaacc ttcaggcaaa gccttgcgat aaaattcacc tttttgagaa catgaaatag
    12961 aagtattaat ttcccttaag taagcttcta gcccatcaat agtattgtta agattatctg
    13021 ctatttcggc taattttttg ctttttgttt ttacatagat gattctattg tcgaaattac
    13081 cctcctttaa ctctctacaa agaaccaaaa gtttatctat cattatttgc tcatctttgt
    13141 gttgtctaag caaataaatc attaaaacag cgattaaaac aaaaattatc gctccaacaa
    13201 aaatatgaat aaaaatgaca cctaaaacac cgataacact tagaaaaata gttaataata
    13261 atccattttt caccataaat ttaccccttt ttattga
//
LOCUS       DAEDTT010000044        13261 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.044, whole genome shotgun sequence.
ACCESSION   DAEDTT010000044 DAEDTT010000000
VERSION     DAEDTT010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13261
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.044"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..400)
                     /gene="ybeY"
                     /locus_tag="KLC54_000909"
     CDS             complement(<1..400)
                     /gene="ybeY"
                     /locus_tag="KLC54_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HBD9177295.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEHFNLPKSLIVRTL"
     gene            complement(397..1011)
                     /gene="recO"
                     /locus_tag="KLC54_000910"
     CDS             complement(397..1011)
                     /gene="recO"
                     /locus_tag="KLC54_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HBD9177296.1"
                     /translation="MQGFILHTQKVKDEDLIVCILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            complement(1011..1532)
                     /locus_tag="KLC54_000911"
     CDS             complement(1011..1532)
                     /locus_tag="KLC54_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HBD9177297.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            complement(1537..2292)
                     /locus_tag="KLC54_000912"
     CDS             complement(1537..2292)
                     /locus_tag="KLC54_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HBD9177298.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGVTVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFANLHTESFWLQKA"
     gene            complement(2289..2978)
                     /gene="pfs"
                     /locus_tag="KLC54_000913"
     CDS             complement(2289..2978)
                     /gene="pfs"
                     /locus_tag="KLC54_000913"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HBD9177299.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQVLLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            complement(2975..3895)
                     /gene="fabD"
                     /locus_tag="KLC54_000914"
     CDS             complement(2975..3895)
                     /gene="fabD"
                     /locus_tag="KLC54_000914"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HBD9177300.1"
                     /translation="MKTAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNG
                     AFDFLEALSLVNKRGLFMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEK
                     VLKPNFKAVISNANAKIYTSKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETCALTNMNDIDEFLKVI"
     gene            complement(3895..4464)
                     /locus_tag="KLC54_000915"
     CDS             complement(3895..4464)
                     /locus_tag="KLC54_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HBD9177301.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLSIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGGGCGCH"
     gene            complement(4478..5425)
                     /locus_tag="KLC54_000916"
     CDS             complement(4478..5425)
                     /locus_tag="KLC54_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HBD9177302.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSSLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            complement(5429..5926)
                     /gene="pal"
                     /locus_tag="KLC54_000917"
     CDS             complement(5429..5926)
                     /gene="pal"
                     /locus_tag="KLC54_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HBD9177303.1"
                     /translation="MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            complement(6003..7211)
                     /gene="tolB"
                     /locus_tag="KLC54_000918"
     CDS             complement(6003..7211)
                     /gene="tolB"
                     /locus_tag="KLC54_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HBD9177304.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYTFEYALNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            complement(7221..8000)
                     /locus_tag="KLC54_000919"
     CDS             complement(7221..8000)
                     /locus_tag="KLC54_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HBD9177305.1"
                     /translation="MKNYGLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQIDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGASSAPKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEAKVKND"
     gene            complement(8003..8392)
                     /locus_tag="KLC54_000920"
     CDS             complement(8003..8392)
                     /locus_tag="KLC54_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HBD9177306.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSAPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            complement(8401..8955)
                     /locus_tag="KLC54_000921"
     CDS             complement(8401..8955)
                     /locus_tag="KLC54_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HBD9177307.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            complement(8955..9344)
                     /locus_tag="KLC54_000922"
     CDS             complement(8955..9344)
                     /locus_tag="KLC54_000922"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HBD9177308.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHATLVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            complement(9348..10745)
                     /gene="atpD"
                     /locus_tag="KLC54_000923"
     CDS             complement(9348..10745)
                     /gene="atpD"
                     /locus_tag="KLC54_000923"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HBD9177309.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            complement(10770..11654)
                     /locus_tag="KLC54_000924"
     CDS             complement(10770..11654)
                     /locus_tag="KLC54_000924"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HBD9177310.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKAVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLEDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            complement(11663..13168)
                     /gene="atpA"
                     /locus_tag="KLC54_000925"
     CDS             complement(11663..13168)
                     /gene="atpA"
                     /locus_tag="KLC54_000925"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HBD9177311.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            complement(13182..>13261)
                     /locus_tag="KLC54_000926"
     CDS             complement(13182..>13261)
                     /locus_tag="KLC54_000926"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The delta subunit is part of
                     the catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit delta"
                     /protein_id="HBD9177312.1"
                     /translation="ELGYELSFSMKALQNKLNEYILKII"
BASE COUNT         4317 a         2557 c         1670 g         4717 t
ORIGIN      
        1 ccaaagtcct tacaatcaaa cttttaggca aattaaaatg ctctataagt tctttctctt
       61 tttctctcat ttctccatta tcattttcat gatcaaaacc tagtaaatga agcatagcat
      121 ggataaaaag caagcttatt tcttcttcat agctatgccc taactcttta gccttttctt
      181 ttgccaaatc cacattaatc acaacagaac ccaaaggcaa actctcatcg atattttcaa
      241 gcggaaaaga aagtacatca gtggttttat cttgttttct ttgctctaag ttaatttctt
      301 gcatttcttt actatccaca aaaacaagct ccacatcttt aggacttaaa aaacttgcta
      361 tagactctaa aaaatcacat ttttcatcac ttaatatcat aaaccttcct taatcaaatg
      421 atataaattt tctatttctt catcatcaaa aatcgcacaa tttttactgc tataaaattg
      481 ttttagtttt ttctcttcaa actcaaatcc taaagcgcat tgagaatgcg aaggtaaaaa
      541 agcccttagt aatgtaatgg aattttgaat tttctcatca caggcaaaac aaaaaaaatc
      601 cttatgcaat cttccttcaa attccaaaat ttttaaataa gcatcaacaa taacacgctt
      661 tggattttgt ttttcaaacc ttttcacaca ctcatcaagt aaatcaaaat aaaaactatc
      721 aagctcttcc acatctttta aatgcctata taaaagacgg ataaattctt gccaaataag
      781 cattttatcc ctttgcataa tccataaaaa tcccaaatgc aatacatctt taagtcttgg
      841 taaaaaacta ggattttctt ctaaagcaaa gtcgatttta tagccgctta aaatactaga
      901 atgtctaagt ccataaaaac gataagcctt aataagcatt ttagggctta aaatacaaac
      961 gatcaaatcc tcatctttaa ctttttgagt atgaagtata aagccttgca ttaaacaatt
     1021 tcaataccat aagctctaag tatatcaaaa gcggattttt ctaaattttc atcaaaactt
     1081 gcacttaaat tttggtgtaa aattatcctt gcattaggct tagcaccaaa agctaaaatg
     1141 atattacaaa acacacaaat atgagaaaca agccctgcaa aatgaagttc ttcataatcg
     1201 cttttttgta taaaattagc taattctaag ctaccaaaag tatttttata aaaaatttta
     1261 tgagcttttt gtaaaaaagg ttcaaattcc tttggcattt gccaacctaa actctcttta
     1321 atgcaatgtt ttacaggtaa atttaaacct tctttacttt gtagataatg ctcatcatgc
     1381 gtatcatagg ttaaaagcaa atgcgtgtta ttaaaatcga tttgatttaa ggctttaaga
     1441 atattttctt tgatttttaa agccttatca aaacctaaac ttccatcaat aaaatcattt
     1501 tgataatcca ctaaaacaaa agcttttttc atgcttttat gccttttgaa gccaaaaact
     1561 ctccgtgtgt aaattggcaa aagcggtttt taaacttgta aaaagcttag gatgatcttt
     1621 ttctaaattt gctaaaagct gtttagcttc ttctctagcg tgggggaatt ttacattttt
     1681 ttcgctgagt ttcataccag gacaaaattc atttcctatc acgctaagtt cattttgcgt
     1741 agcattatcc ctaagctgtc tttctcgcac aaaaatcaaa gggcgtatca cagttacacc
     1801 acgtttgctt tgataaatag gcgctaaggt tcttaaagct ccattatgaa taaaattcat
     1861 aaaaaagctt tctgctgcat catctaaatg atgagctata gcaagcttgt taaaaccttt
     1921 ttcaagggcg taagtatata aagccccacg acgcattctc gaaaaataac tacaaaaact
     1981 tgaattttct cttatggtat cgcctgaaac ttcataaata tttgaatcaa gcacgctatg
     2041 tttaatgccg tgttcttcac aatgtgcatg aagatgagaa taatcctcgc ccatgccata
     2101 actcaaagtt accgcttcaa gttcaaattt aaaaggagca tgagcttgca tacgatttaa
     2161 aagatgggct aaagccaaag aatctttccc gccactaagc cctaaaagaa ccctatctcc
     2221 atctttaata agtccaaatt tagcattagc ttgtgcaact tggcgtatga gttttttgct
     2281 aagatttatc ataatttctc gcacatttta agcacaaaat tggctgaaat tttagctgaa
     2341 ttgatcacaa attcatcaaa atcaaattca gctttttccc ctgctttatc actcatagct
     2401 cttaagataa aacaaggcac ctttaaggca tcacaaacca aagccacact tgcgccttcc
     2461 atttcacaag catcagcatt gaaaatttct ctgatttttg ctttttttgc ttcatcgcaa
     2521 ataaactcat cacccgttgc aataatgcct gcacgcagtt tgatatttaa ttccttagca
     2581 acttctaaag caagattgtt taatttctca tcggttttga taaaaatttc attacctgga
     2641 acaaaaccca aaggatgtcc aaaagcggta atatcaagat cgtattgagc taattttgtt
     2701 gcataaagca aatcaccaat ttcaagctca ggattaaaag cacctgcaac acccgtaaaa
     2761 agcaacactt gtgcgccaaa tttttctatc atcacactag cactaagagt agaatttacc
     2821 ttgccgattt tagaatacgc taaaacaagt tcatgatttt tatactttgc aaaataataa
     2881 gtattattag cgtgttctat tttcgtataa tctttaagtg tttcaagtaa aggagtgatt
     2941 tcttcactca tggctcctaa aattgctatt ttcatcatat aacctttaaa aattcatcaa
     3001 tatcattcat atttgttaaa gcacaagttt cttttgaagt gattttttta ttcaaaccct
     3061 taagcacact tgcaccaaat tctatgaaat aatctacttc attttcacat gccttaatgc
     3121 tttgtttata aagcacagga gagataagtt gtgcttttaa aagttcaagg gcttcttctt
     3181 tgcttgtata aattttggca tttgcattag aaattacagc tttaaaattt ggttttaaca
     3241 ccttttcaag ctccacacaa agcttagctg aagcattttc caaaagagga caatgacttg
     3301 ccacgctcat atttaaaagc atagctcttt tagctcctgc ttctttaaat acactttcat
     3361 aacttgctaa atcaggtttt aaacctgcta caacgatttg tccgtcgcag ttataatttg
     3421 cagcgaaaat ttgcttgttt tctttttgtg ctttttgaca aagctcttca accttttcat
     3481 catcaagccc caaaaccacc atcatacctg cttcaacttt tgcacaatct tcttgcataa
     3541 aaagtcctct tttattgacc aaagaaagag cctctaaaaa atcaaaagca ccattgacag
     3601 ctaaggctga aaattctccc aaagaatgcc ctaaagcaaa tttcgaactt aaatcaggtt
     3661 ttttttcaag taaaacacta taagccatta aggaatttaa aacgatggcg ggttgagtaa
     3721 attcactttg attgagtttt tcgttttctt caaaaagcaa atgtttaaaa tcaatcttac
     3781 aaaaatcact tgcgttttga aggagttctt tggcttttat agagttttca taaaaatctt
     3841 ttcccatgcc aagactttgt gagccttgac ctggaaatat aaacgcagtc ttcattaatg
     3901 acaaccgcaa ccgccaccac cacagcaacc gccgccaccg tgtccgtgtc cgtgatgatg
     3961 atcgtgccca tgtccgcttc cacaaccaca actatgactt cctgcgataa tacctgtaag
     4021 aatttcatct tcactcgcag ctctagcatc tacgatactt aaagaaaaaa gcaaatcacg
     4081 accagcataa ggatgattat aatcaattgt cacatcattt tcgccaatct cttttacagt
     4141 tacacgaacg gtttcgccat tttcaccttc gccaaaaagc tccataccta cttttaaatc
     4201 aatacctgca aattgctctt ttggtaaagt ttgaaccgca ttttcatcgt attcgcctaa
     4261 acctttttct tttttaatta ccacatcagc attgctaggg caatcaagct tcatcacttc
     4321 ttcttctaag ctttctaaaa tctgaccttt gcctaaaata aaagaaatag gttgagaata
     4381 taaatttgat tctaaaactt catttgtatt tgcatctttt aactcataaa acattgaaac
     4441 tacactattt ttttctatag ccattttatc tccttaatta ttttctatta ggtgaagctt
     4501 ttgcttcggg tgaatttgga taattagttt ttaaagcttt ataaaaacca tttgctgttt
     4561 ttgtatcacc tgttttatcc aatgaaatgg cagtatgata taaaagtttt gggaaataat
     4621 ccccttttgt actcaaagaa gaactttttt tataataaac aatagcattg ttataatttt
     4681 tttgtttata ctcgatctcc cctaaccaaa aatttgctct tgcaggttta tactgctttg
     4741 ttatgagaaa atttaatttt gctttggaat cttcaaaagc atttttatca acatctttta
     4801 tcgctaattc taaaatttca ttattttttt tctttttcca agattcatca atttgttttg
     4861 ctttatcatc ttgggtattt tgagtattat tgttttcaat ggtactattt gaatctgtag
     4921 ttgaaacaac aacactaggt gtaatagttt taacgcttaa atttgcatca tttaattcgt
     4981 ttttagaaac ataatttgca ttaatagcat ctactaaaga actaagttcg gctaaaactt
     5041 tttttacttg cttattatta gcttcttgaa tttttctact ttcttcaaca taagccttta
     5101 atttttgaat ttcactagta aaattatttt caatattttg attattctct tcaacttgac
     5161 ttaatctaga atttgattta gcatattgag aatttatacc ttctaaagta ctttgtaaac
     5221 cctcgattct ttcgttaatt tcattaattc tagcatttgt ttgtatattt tcattattta
     5281 aattatccaa cttttcttta aataattttt catttgaagt taaaccataa gaagaattgc
     5341 ttgttatatc tcctgcacca aaagctgagc tttctgcata aagtaaagta gctccaagaa
     5401 gagctactgt gaatattttt ttcattaatt atcttgataa tttaaattca gcacgtctgt
     5461 tttgcgcatc gcaagcttta gttttttcag tgcacacagg atttgtttct ccatagcttt
     5521 taacagcaat tctatcagca tttacacctt tagcgattaa agcttctttt acagcttttg
     5581 ctctttttaa acctagagct tggttatatt catcagttcc ccactcatcg cagtttcctt
     5641 caacagtaat acttacaccg cttacttcag tgttaaagat attagcattc gtgcttacaa
     5701 cattttgcat atcaggacga atgttgaatt tatcaaaatc aaaatatact ttatttaaag
     5761 tatcattaag ttgagaaatt tttgaatcaa tatcccaacc atcacttcca cctgaaccac
     5821 gatttgaatc aacactacta tcaccgctta cgctagtgct ttttgtgcta caaccactaa
     5881 taacaactgc aagagctgca attgaagtaa aaagaatttt tttcatttat gacctttcaa
     5941 agttaataaa ttcttactat tatatctaat ttttaattaa ttttaaccta aaattgaaat
     6001 ttttaccaat caattgattg aatttttcca accctaagag gaaaataaaa agtcttattt
     6061 gcatttacac gaataacacc taaagcactt tgcgcaccta aatatttgat aaatactata
     6121 cttccaccat cactagaaaa tcttggaaat aaattttttc catttgctgt aagttgacga
     6181 atataatcac tattaattga catcaaataa atattaaaaa cacctgcttg atttggttca
     6241 cgacttgaat aaaccaaaaa atctttataa gtcgaaacag ccgaattgtt tctaccatga
     6301 aaaacaactt gttcagcact attactattt aaatcttgca taaaaatatt aggatatccc
     6361 aaacgatcgc ttacaaatac cactttacta tcatctgagc caataaaatt tccattaaca
     6421 tcaataccag aataattagt taattgtgtt agatttttgg tatttaagtc atataaataa
     6481 acatcaggct gatcttttgg agccatggta acaagtagtt tacttccatc tacactcaca
     6541 tcacttgcta caaccatacc gccacttgat aaaattttac tagctttatt ggtatttaaa
     6601 tcataacggt ataaagttgg cttatcatga tcataagctg tataataaaa tagagtttgt
     6661 tctttatttc cccattttgg aaataaatta agcccaccat caacaataac tttttgataa
     6721 gttaaagtat aatcagccat aataatttga ctttttttag agctagaatt tctcgcgatc
     6781 aaaattttat gatccatcca atcaacaggt gcaagtccta acgcatttac agaagctttg
     6841 acgcttttat gtgccaaaaa tggatattgc tctaaaccat ttaaagtata agtttgctct
     6901 gacttatcag aaccgccagc ttttattttt acatttaaac tcaaagtgtt accattttta
     6961 tttaaagcgt attcaaaagt ataattactt gtctcagttg cattagcaac aacttcaaaa
     7021 tttgaactta ctttcaaatc gttcacaatg atattataaa agcttttctt taaattctca
     7081 tcacttaaat ttgaattatc tttaacaata atctttggta aaactacacc agaattaaca
     7141 acatcaatca ctggatcttc tgcccaaaga cttcctaaaa agactaaaaa aattgctaca
     7201 atttttttca tttttttctc ctaatcattt ttaacttttg cttcatctct taaattcatg
     7261 gtaatgctta tatttttatt ttgcggagga taagtaataa atttaccttt ttgactttct
     7321 aaaaattcag ccactttagc atcatataaa ggattcccac ttttttcaac tgaagtatag
     7381 ccaaattttc cattttcatc aataaaaatt tttaccttaa cagaaatttt ttcactattt
     7441 ggataatact gagtccatct ttgagtgata atacgcacaa ctttccctaa aaattcatca
     7501 taaattccaa tcttttgcgc ctttgtgctt tcgccttgcg ttgaactttc ttcttgaagt
     7561 aaactatcat taagttgttt tacaagttcg gaagcttgag gttttggggc actagaagct
     7621 cctgatttag cacttgattg aatttttgta gtcttttctt cttgtatttc tttgatattt
     7681 ccaaaaagct cattaaaatt acttgccttt tggtcaatat cttcggtttt aactgtttta
     7741 tttgtagtct gagcaaaaag cttttctata tcaatttgct ctgttggttt ttgtatttct
     7801 ttaggagtgt tgctctgagt aataacttgt tttgatggtt cagcaagttc aatatctaca
     7861 aaactatctt ttatatcagt atattgtata gcaggttcaa cctcgcttac aagtctaaaa
     7921 aaaacaagaa ttactatact aatatatatt gctaaagcaa gtaaaaacga atttaaatta
     7981 ctcaaaccat aatttttcat gattattcag tctgtaaagc aactttatta aatcctaaat
     8041 tttttacact tcttaagact gaaataacat cgtcatattt taagctttta tcagcgcgta
     8101 taaaaaccgg atcttcggta ttaaattgtg cttttctttg agcaagattg tcagcaaaac
     8161 ttataaaatc gtatttttct tgatttaaaa aaatttcttt ttttgcatta atactaataa
     8221 ttaaactctt aacagttgga gcgctagtat ttttttgact accttgtgga agattaattt
     8281 tttcttcata agtaatgctt ggagctgtta ccattaaaat cgcaagcaat acaagcataa
     8341 tatctactaa aggtgtgata ttaagctcag gtttttcatc atcaaatggc atttttaacc
     8401 ttatttactc gaacttataa ctttaatctc gctatcaata atgcttaaaa gttcgaaagc
     8461 ttttctttta atgatgagat gaaatgtata agcaggaatt gctactaaaa taccacaacc
     8521 tgtagcaact aaagcctcac tgattttagg agctatgata cttaaagaat tttgagttcc
     8581 aagcccacca aaagtttcaa gtatagaaat aactgtccca aaaagaccta taaaaggtga
     8641 agttgaagca ataatactaa gccaagtaag tccagcagaa gcgcggcgac ttgctaaatt
     8701 tttatagatt tctaaatgat ttgaagttgt atcattgcat tttcttaaaa tcgaatcagt
     8761 acgacttaaa tccttctcac ccaagagcaa agtttctaaa ctttcttttt ctttatttct
     8821 ccatgtagcc aaataagtca atctagcaaa caaaatacta aatgctaaaa taaaatataa
     8881 agaaagccat aataaaacta tataagtaat aatacttgaa ctattgaaaa aatgaaatat
     8941 agcttcaaaa ttcattaatg catccttgca ttatcaagtt ttgaaaaagt tgctgctaaa
     9001 gctgcattat cagaactcat agatttaatc aaatcttttg cttgagcaag atttttttca
     9061 atctcacttt catcacttcc acaaacccaa accgcaccct ttgctaacac gcaaatctta
     9121 tcttcatcta cctttgcatg tccagcatca atagcaatta attcatgatt taaatcagct
     9181 ttttcaatat caattactcc agattttaaa gaagaaacca aagtagcgtg tcctttaagt
     9241 acgccaaatt ctccctcgct acctggtaaa gtaacagatt ttacttctcc ttgatagatt
     9301 acacccaaag gcgtaactat ctcgaaatta atcaaatcgt tcataaatta accttttaat
     9361 ttatccgctt ttgcaatagc ttcatctata tttccaacca tatagaaagc attttctggt
     9421 aaatgatcat atttaccttc taaaattccc ttaaatcctg ctattgtatc ttcaaggctt
     9481 atatattttc ctgggctacc tgtgaaaact tctgcaacga aaaatggttg tgataagaat
     9541 ttttcaatct ttcttgctct ttcaactaca agtttatcct cttcgctaag ctcatccata
     9601 cctaaaatgg cgatgatatc ttgtaaatct ttgtattttt gaagcactga ttgaacacca
     9661 cgagcaactt tataatgttc ttctccaatg atatttgggt caagcattct tgaagttgag
     9721 tcaagtgggt caactgcagg ataaataccc ttttcagcaa tagctctatt taaaaccgtt
     9781 gtagcatcta agtgagcaaa aacagttgct ggagctgggt cggttaagtc atcagctgga
     9841 acgtaaacag cttgaactga agtgattgag ccttttttag ttgaagtaat tctttcttgg
     9901 aatttaccca tttcacttgc taaggttggt tgataaccca cagctgatgg aattcttcct
     9961 aaaagtgctg acatttcaga acctgattgt gaaaatctaa agatattatc aataaacata
    10021 agcacatcaa gacccatttc atctctaaaa tactcagcca ttgttaaacc tgttaaagca
    10081 atacgatttc ttgcccctgg tggttcattc atttgtccat aacatagagc aactttgtct
    10141 aaaacattgc tttctttcat ttcattataa aggtcatttc cttcacgagt tctctcaccc
    10201 acacctgcaa atacagaata gccactatgc ttaaatgcaa cattgtgaat aagctccata
    10261 ataataacag ttttaccaac acctgcacca ccaaaaagac ctactttacc accttttgca
    10321 taaggagcaa gtaaatccac aactttaatc cctgtttcaa aaatctcact ttttgtgctt
    10381 tgatcttcaa aagctggcgg atctctatga attgcccatt ttttatcaaa agaaatttct
    10441 tcaccttcat cgatcaaatc tccagtaaca ttgaaaattc ttcctaaaac tttctcacca
    10501 acaggaacac taataggagc acctaaagcc tcagctttta agccccttac caaaccatct
    10561 gtcatatcca tagcaatagt tctaactcta ttatctccta aatgagctgc tacttctaaa
    10621 acaagtttat gtttttttcc ttcgctttca aaatttacaa caattgcttc attaatttga
    10681 ggtaaatagt cgttaaaatc tacatcaaca accggaccta atacctgtga aataaatcct
    10741 tgcattattt atcttctcct taaaatttac tatttcattg attcaacacc actgataatt
    10801 tctataagct cagtagtaat ggattcttgt cttgctttat tataagctaa atttagttgt
    10861 ttcactcttg cctttgcgtt attagttgca ttatccatag cttgcattct tgcactatgc
    10921 tctgccgcca aagaatcgat taatgcataa tacatattat actcgaaata tgttttcatt
    10981 aaatcttcta aaagctcagt tccttctggt tcaagctcta aaagagaatt atgagtctgt
    11041 tcaatactct ttggttcaac tggaataaga tgattaattt taagttcttg ggtaatcata
    11101 tttttataac cattatgaac taaaatcact tcatctgtat ttccatttaa aaaatcatct
    11161 acagcagcat gaattacttc acatgctttc tcatagtcag gactagaact aagatggaaa
    11221 tatttctcta acaattctat tttttgaaaa ttaaaatatt caatcccagt tttacctata
    11281 gctctaagac gaatattaat attttttgct tcatattctt ttagcatttc acttactgct
    11341 tttaaagtct taatattaaa accaccgcat aagcctttat ctgcagtgat aaatattaaa
    11401 tctacagttt taatttgttc ttttttatga aacaaagata aacgcacatc atcttcattg
    11461 tgaacaattt tattgatctg aaatgaaatt tcactcaaaa tttcatcgat tttttgtgca
    11521 taaatttttg atcttttagc tgcttcttct gcttttttta acttagcagt agaaactagc
    11581 ttcatagcat ttgtagtctt ttgagtgtta tgaacacttt taatttttct tttaatttct
    11641 tttaaattag acataaaaga ccttataaat gatttgcttt aaactcatta atggctttag
    11701 ctagtttttc ttccaaatca gaatctaaag cttttttaga gcgaatttgc tcaaaaatat
    11761 ctggatgttt tgcctcaata aaaggataaa ttccatcttc aaattcctta attctagaaa
    11821 cagcaatatc atctaagaaa cctttggttc ctgcaaaaat taaaactact tgtttttcaa
    11881 cgctaagcgg agaataaggt ggttgtttta agagttcaac cattctttgt ccacgttcaa
    11941 gttgttttct acttgcctca tctaaatcac tagcaaattg tgcaaaagct tgaagctctc
    12001 tatattgagc aaggtcaagt cttaatgtgc ctgaaacttg ttttgtagct ttaatttgag
    12061 cagccccacc tacacgagat actgataaac caacattaat tgcaggacga attcctgagt
    12121 taaataaatc agtttctaag aaaatttgtc catctgtaat tgaaataaca ttagttggaa
    12181 tataagcaga aacatctcct gcttgtgttt caattatcgg caatgccgtc aaagaaccag
    12241 cacctaattc atcatttagc ttgcttgctc tttcaagcaa tcttgaatga aggtaaaaaa
    12301 catcgcctgg ataagcttca cgacctggag gacgacgtaa aatcaaagac atttcgcgat
    12361 aagctacagc atgcttgctc aaatcatcat aaacaattaa agcatgtttt gcgttgtctc
    12421 taaaaaattc acccatggtt acaccagtat atggagctaa gtactgtaaa gccgcaggat
    12481 ctgaagcacc agcatttaca acaatagtat attccatagc accatgttct tctagtcttt
    12541 taaccacttg tgccactgta ctttgctttt gaccaattgc aacatatata cagataactc
    12601 cttgacctct ttgagatata atagtatcaa cagcaacagt agttttacct gtttgtctat
    12661 cacctatgat aagctctctt tgaccacgac caattggcac aagcgcatca atagctttaa
    12721 ttcctgtatg taaaggctca tgaacacttt ttctcgccat aatacctttt gctttttctt
    12781 caacaaaacg atattcatta gcattgatca cacctttagc atcaattggc tcacctaaag
    12841 catttacaac acgaccaatc aaagcctcac ctactggaac tttaagtaat ttcttaagtc
    12901 tttttacaga agcaccttct tttaaacctt ctccttttcc aagtataaca atacctacac
    12961 tcgactcttc aaggtttaag gccattcctt tatcaccatt ttcaaattct accatttctc
    13021 cagccataat attcttaagt ccatatacct tagcaacacc atcagctaca gaaataatct
    13081 ttcctgtttc ttcaatttca agatttaaat caaaattttc aattctttct ttgattattg
    13141 aactgatctc atcagcttta aatttcattt actttttctc cttagataat tttcaatata
    13201 tattcgttta gcttattttg aagagctttc atagaaaaag aaagttcata acctaattct
    13261 t
//
LOCUS       DAEDTT010000045        12940 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.045, whole genome shotgun sequence.
ACCESSION   DAEDTT010000045 DAEDTT010000000
VERSION     DAEDTT010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12940
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.045"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..309)
                     /locus_tag="KLC54_000927"
     CDS             complement(<1..309)
                     /locus_tag="KLC54_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HBD9177313.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     F"
     gene            complement(306..911)
                     /locus_tag="KLC54_000928"
     CDS             complement(306..911)
                     /locus_tag="KLC54_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HBD9177314.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICVKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLIKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKVGLEPKGIDFLKSLLEFSQIPLYAIGG
                     INTQNIENFKDINIAGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(901..2046)
                     /gene="thiH"
                     /locus_tag="KLC54_000929"
     CDS             complement(901..2046)
                     /gene="thiH"
                     /locus_tag="KLC54_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HBD9177315.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLTQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLSEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNALKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFGALLGIDDFRKDALATALHAHFLQQAYPHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(2049..2825)
                     /locus_tag="KLC54_000930"
     CDS             complement(2049..2825)
                     /locus_tag="KLC54_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HBD9177316.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKTQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDV
                     ALMAKAFSLAVNAGRAAFLAGLASVSKAKASSPLTGFLRD"
     gene            complement(2828..3631)
                     /gene="thiF"
                     /locus_tag="KLC54_000931"
     CDS             complement(2828..3631)
                     /gene="thiF"
                     /locus_tag="KLC54_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HBD9177317.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLESLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDGILICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKVGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(3628..3819)
                     /gene="thiS"
                     /locus_tag="KLC54_000932"
     CDS             complement(3628..3819)
                     /gene="thiS"
                     /locus_tag="KLC54_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HBD9177318.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGLKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(3816..5261)
                     /locus_tag="KLC54_000933"
     CDS             complement(3816..5261)
                     /locus_tag="KLC54_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HBD9177319.1"
                     /translation="MNLNQTLQEKYPHLEVSVLKLSEVKKNIDFRIDDSFWTMKLIYN
                     NKLNYKKIGECLLKSQYGISINMNEEGDGIPIYRMNDIDNMLCNFEVKKYALIDKNEL
                     QTFRLNYGDVLFNRTNSYEFVGRTGIFYNNRENFVFASYLVRLVCNKEILLPEYLTVF
                     LNTHIGKKEIRRRARPSINQANVNPEELKEIKIPIFPMEFQLEIQNLVKDSHKALEES
                     KELYKKAEETLYLELGLDPKNPLQSLLDSKTNNPTKSLNISIHTLKESFLKTGRLDSE
                     YYQSKYEDIEKMIRSYKDGFCNLKDLVNDISSGFAFSSDDYQDVGELVLIRINNIKNA
                     TLDLSNVIYLKNEAYNLSPKDKIKKGDILISMSGSIGLSCVVRDDISAMVNQRILKIS
                     IKNFNSDVLVLLLNSFICKMQFERIGTTGGVQTNLSSIDMQNILIPKIDSTTQEKIAK
                     YIQESFNLRKKSKQLLDNAKIKVEEQIQGKI"
     gene            complement(5387..5890)
                     /locus_tag="KLC54_000934"
     CDS             complement(5387..5890)
                     /locus_tag="KLC54_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177320.1"
                     /translation="MYHLLDFSTCKCENEKFDLAYKIFKQDFIEVPLYLAGCIYIDPQ
                     SHKKHKGKEKIFWHITTRENKQNKTREFDSQRACRINWIKQIIINHTHPEIKAFYYKE
                     KRAIRFYLWLYNHNFIVILQKLGRSSSFLVTSFYIDKGYNKNIYEKRYRNYINGNDIE
                     LKNCEWF"
     gene            complement(5890..6615)
                     /locus_tag="KLC54_000935"
     CDS             complement(5890..6615)
                     /locus_tag="KLC54_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HBD9177321.1"
                     /translation="MNNMKEFKIFCDESNHLFYKDNPTLCSRVMVLGALKVPSSEIIK
                     INKTIKYLKHKYKYNKEIKWTKLNLSQKGFYDELLEFFFSSVYMWFKAVLIPNKTILQ
                     HDIYNQGDHDLFYYKMYYQALHNLIDIDTKIKIYLDYKDTKSGDKIKGLEKVLFNKFK
                     QSVNIKIFTIQSHESNIVQLVDLLIGAISYKARNDIEHVSEIKNYIINKIETLANIEL
                     DAGTPPWENKFNIFRIQLSKGEQ"
     gene            complement(6620..8683)
                     /locus_tag="KLC54_000936"
     CDS             complement(6620..8683)
                     /locus_tag="KLC54_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HBD9177322.1"
                     /translation="MIEEILKDSDYKLDLFSKKAIAELETKIIAKTNKNNQIIYYTNC
                     LIRDKEIKLTPEEIVRQLYIDKLLNEYNYPKDMIKIEFGVHFGREVKRADIVIMDKIQ
                     ITVPYIIIEVKKPKLKDGKEQLKSYCNATGATMAVWCNGKEISYYHRKDPNYFESIPN
                     IPASNQTLPDLLKVKFTFDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECF
                     KLIFIKLFDELEGVRDRTKSLEFRNYGGSDSELKQKIEKLFDKAKKKWEGVFNNDEKI
                     KLSPSHLSVCVSSLQNVKLFNSNLEVIDDAFEYLVNKSSKGEKGQYFTPRYVIDMCVK
                     MLNPKKDESMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVK
                     EKVFGIDFDEKSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEG
                     FKRLKNLRVTKNQNRDFNFDVLMANPPFAGDIKESRILARYELGKKENGKPQSKVGRD
                     ILFIERNLDMLKPGGRMAIVLPQGRFNNSSDKYIREFIAQKARILAVVGLHGNVFKPH
                     TGTKTSVLFLQKWDDKLCPKCEDYNIFFATMNEPSKDNSGEKIYYPLLDSHDHLVVKH
                     DLFHPHLEGDEPIKQKDESQEEFDKRIQEYRLNVEKYKDLQKDGIAEAFIEFAKAENL
                     SFWKE"
     gene            complement(8693..9790)
                     /gene="dapE"
                     /locus_tag="KLC54_000937"
     CDS             complement(8693..9790)
                     /gene="dapE"
                     /locus_tag="KLC54_000937"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HBD9177323.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFNDEGEHLAFGGHVDVVPTGEGWKNDPFEPLEEEGFIYARGAQDMKSGVA
                     AFIDAVKDVSFKGRRLSLILTSDEEGEAKYGTKAVLEWMKEKNMLPDYAVVAEPTCVK
                     KMGDSIKIGRRGSINGKLLIRGKQGHVAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            complement(9795..10394)
                     /locus_tag="KLC54_000938"
     CDS             complement(9795..10394)
                     /locus_tag="KLC54_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HBD9177324.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLDNVIFMRFLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGIILNGSNPYVIGFWLSATGIVLSNQHTYSTILGLVVAILFWIGALAF
                     VVAKYSYLFSAKVIRIINIVSALIIEYFALSLLYKTFIG"
     gene            complement(10387..11088)
                     /locus_tag="KLC54_000939"
     CDS             complement(10387..11088)
                     /locus_tag="KLC54_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HBD9177325.1"
                     /translation="MKNIMILSGAGLSAPSELKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     IHLHGFLPELRCLKCEGIFNIGYEKFTDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLHQTSLFISIGTSGAVLPVGQYASMCEKSILNIYEKDVNLERYFDKIYIEDIISAID
                     KITLDIENFMKDGNV"
     gene            complement(11131..>12940)
                     /locus_tag="KLC54_000940"
     CDS             complement(11131..>12940)
                     /locus_tag="KLC54_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HBD9177326.1"
                     /translation="DNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDFNLAELEAFKD
                     YRNAFRQTSDYKKLKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVL
                     IIKSPSDIKEQKKFLGYEWSNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLIYKS
                     FLNTLDVIPQELQTYATKARLVDMIDFEKVEFNKAISLNPKTQREEIKSQYPLVKLKI
                     CGDFFMGGTPSRKNINYWNGDIKWLTISDYSNHQVIMDTKEKITREGFKNSNAKMIQK
                     GAVVVSIYATIGRVGILGEDMTTNQAIVAIIPNEEFINKYLMYAIDYFKFQLYNEVIT
                     TSQQNINLGILQNMVIPKPPLEIQKQIVAECEKIEEQYNTLSLSIKEYQNLIKAMLQK
                     CGIIEDNQEYELNSILDKINNLCKINLDSEFLSSFNKTIKEYALSNPIFKLSIGKRVL
                     NNELLENGQIPVYSANVLEVFGFVNKEILQDYDNDSVLWGIDGDWMVGFIPKNKKFYP
                     TDHCGVLRVDDTKINAKYISFILNEAGKKQGFSRKLRASIDRIKALRVKLPSLEFQDQ
                     IADIIDKIEKKINEYKIELDRLEKEKEKILQKYLFS"
BASE COUNT         4149 a         2449 c         1495 g         4847 t
ORIGIN      
        1 aaatgcattg tcaaaaaaaa ataaataagc ttcataaact cctttactaa gtcctacatt
       61 gcttaaagta tagctcccag cttttaaaaa caaagtttca taagagttaa tcttataatc
      121 ttttgatgca gtgtgtaaaa ttttatatcc tttgcgaaca aaagttaaaa gatgacttcc
      181 tacattaaca aaagtagaat gcgaagtatc cgtttgtgta tatttagcaa aagtgcaaga
      241 tttaattttt ttataattga caccttttaa ttgctttaaa tcttctggta aagaaagaat
      301 tttattcatc gtaaattttg cctacattct aaaagatact ttttaagatc tttttctttc
      361 attaaaattt cacgcataca aacgcctgct atatttatat ctttaaaatt ttctatattt
      421 tgagtattga taccgcctat agcataaagt ggaatttgac taaattcaag caaggatttt
      481 aaaaaatcaa tccctttagg ctctaaaccc accttgcaag aactttcaaa aatatgccct
      541 acaaaagcat aatttacctt ataactcatc gcctctaaaa gctcttcttt actatggact
      601 gaagtgccaa gtatatgaaa atattttatt aatttaggct cttttcttag caaagaaagc
      661 ggtgcgtgaa aataacgatg ccccaatttt aaacactccc tatcaaaaaa atgcaaaaaa
      721 caagtcactt tttgctttac gcaaatgctt aaaacttctt ttgctaaatc ataatactca
      781 aattcgctta aatctttttc tcttaaaact atagcatcta ccttagcctt agcaagtttt
      841 tcaatctgct ttaaaaagtc tatttctaca cattttctat cgcttatggc gatgattttt
      901 ttatcccaca tagatactat cgctcatcac agcttgtaaa ttggatcttt taagcatagc
      961 taaaatttca tctacgcttc tatcatctga aatttcaaac tgctcatcac cctttttctc
     1021 acccttatgc tcacctatac ccacactcac tcctgcactc attttagtag caccaagctt
     1081 aataacctca tctctaaagc ctattctttc acgacttgaa atggtaatgc ctgcaaaagg
     1141 taaaaaaagt ctataagcac aaagtacttg caaaaggcgt ttttcactca catctttagg
     1201 atgaatttta gcattattga taataggcct taaacgtggt actgaaatag aaatttcagc
     1261 atgaggataa gcttgttgta aaaaatgcgc atgaagtgcc gtagcaaggg cgtcttttct
     1321 aaaatcatct atacccaaaa gtgcgccaaa agccactcca cgcatacccg cttttaaagc
     1381 tctttcttga gcattaaagc gataagggaa aatgcgtttt tcaccagcta aatgaatttt
     1441 agaatatttt aaagcattgt aagtttcttg aaaaacagtc acataatcac aacccttttc
     1501 atgcaaaatt ttatattcat cttcattcat aggataaatt tcaacgccta caaccttaaa
     1561 atactctcta gctattttac aagcatttgc tatatattct acacttgcaa actccctacc
     1621 ctcgcctgtt agcattaaaa tttcttctaa accactttta gcaatggctt gcatttcttc
     1681 gtgaatttca gcttcactta gcttggctct tgcgatttta ttaccttttt gaaaaccaca
     1741 ataaacacat ttagaattac aataatttga caaataaagt ggggtaaaaa gagagataga
     1801 atttccaaaa tatttttgct tgactttagc ggatttaaag gctaattctt ctatgaaatc
     1861 ttctgctgca cttgaaagca aagcttttaa atgctctatg cttaaatgtg tttgatttaa
     1921 agcattttta acatctttag cgctaaattg actctcatca taactttgaa cttgagttaa
     1981 aaccttgttt aaaatttcgc tttttatttc ctgcatatga ggtaaatact gcatataatc
     2041 ttgcataatc aatcccttaa aaagcctgtt aatggagaac ttgctttagc tttactcaca
     2101 cttgccaaac ctgctaaaaa agccgctctt cccgcattta ctgccaaaga aaacgcttta
     2161 gccattaaag caacatcttt tgcttcagct atggctgtat ttaccatcac cgcacttact
     2221 cccatttgca tagcttcaca agcttgtgaa ggacttccaa tacccgcatc tacaatgata
     2281 ggcaaatcaa tttcattaag caaaatttgt ataaattcct tagcacataa acctttattg
     2341 ctcccaatag gcgctgctaa aggcatgata gccgcagctc cagcatcacg catagctcta
     2401 gctgcgtaaa gatcagcatg catgtaaggt aggggcgtaa aaccctcttt agctaaaagc
     2461 tcacaagctt taatcgtttc ataattatca ggcagcaaat acctactatc gcttatcact
     2521 tctatcttga taagttctcc acaaccaagc tctcttgaaa gccttgcaat gcgtaaagct
     2581 tcatcggcgt ttcttgcgcc tgaagtgttg ggtaaaagtg tgatattttt agggatataa
     2641 tcaagtatat tagcaatttc ccctgtattt gcacggcgta aggctagagt gataatctgt
     2701 gttttagctt cttctatagc tgattttata agctctagcg aatattttcc agaacctaaa
     2761 ataaatcttg aatcaaactc gtatttgcct atttttaatt tatcgttttt taaattttct
     2821 tgcattttta ctccttattt gctaaaagct ctaaaacaag gttactttga tgtcctgcgc
     2881 aaatatttac ccttggcgcc ataagtccat ttcccacctt agcaccattt accaaatccc
     2941 cgcacacata gaaattttta gcaatttttc ttgtttgtat gctgttgcta tcaccatagc
     3001 ccgcaagccc tgaagcgcag attaaaatac catctttgta aaatctatga aaattttgcg
     3061 ctatcattgc ttttgcgata gcactatcaa aggcttcaca aactatatct atatctttaa
     3121 acaaagactc taaattatcc tcatcgattt ttaaagtaca aatttcaacg ctgatataag
     3181 gattaatttc gctaatttgc tcttttaaag cttcggtttt aaacttgccc aaatcactta
     3241 cacggtaagc ttgacgattt aaattactag gctcaatcac atcaaaatca atcaacttta
     3301 aataccccac tccacttctt gccaaattta tcgctatatg tgatccaagt ccgcctaaac
     3361 cacacaccgc cacgcgccca tttttaagtt tatcgtgaag ctttggtgta tgtcttgctc
     3421 tcatcatagc atctagtgcg tcttttggag gtaaagtatt tttttctata caaaaaagct
     3481 catcattttc atttaaagcg atattctctt ttgttgcaaa accattgata atccatacat
     3541 cattttcatt tttgctgata ttttcaaaaa attccaaact tgttttaaag tctgtatcaa
     3601 gttctttgcc attgaatttt actctcatca tccacctcct acaaaactta cgatttcagc
     3661 tttatcgttt tcttttaaaa tcaaattttc aaattcactc ttaggtataa tctctccatt
     3721 taattccaag gcgataagtt ctattttcaa gcctttttct ttgataaaat ccataaattt
     3781 aagctctttt aactcaagct tttgtccatt gataatcata tttttccttg tatttgctct
     3841 tctactttaa tttttgcatt atctaataat tgtttagatt ttttccttaa attaaagctt
     3901 tcttgtatat attttgcaat tttttcttga gttgtagaat ctattttagg gataaggata
     3961 ttttgcatat ctattgaaga aagatttgtt tgaaccccac ctgtagtacc aattctctca
     4021 aattgcattt tacaaataaa agaatttaaa agcaatacca aaacatcact attaaaattt
     4081 ttaatcgaaa tttttaaaat cctttgatta accatagctg atatatcatc tctaaccaca
     4141 caagacaaac caatgctacc agacatagaa attaaaatat cacctttttt tattttatct
     4201 ttagggctta aattataagc ttcattttta agatagataa cattgcttaa atctagcgta
     4261 gcatttttta tattattaat cctaattaat acaagctctc caacatcttg gtagtcatca
     4321 cttgaaaatg caaaaccact tgaaatatca ttaactaaat cttttaaatt acaaaagcca
     4381 tctttataac ttctaatcat cttttctatg tcttcatatt tactttgata atattcagaa
     4441 tccaatcttc ctgtttttag aaaagattct tttaatgtgt gtatagagat attgagtgat
     4501 tttgtaggat tatttgtttt agaatctagc aaactttgca atggattctt tggatcaagt
     4561 cctaactcaa ggtataaagt ttcctctgct tttttatata actccttact ttcttctaat
     4621 gccttatgag aatcttttac caaattttga atttctaact gaaattccat agggaaaatg
     4681 ggaattttaa tttcttttaa ttcttcagga tttacattag cttgattaat tgatggtcta
     4741 gcccttcttc ttatctcttt tttaccaata tgcgtattta aaaaaactgt aagatactct
     4801 ggcaacagaa tttccttatt gcaaacaagc cttactaaat atgaagcaaa aacaaagttt
     4861 tctctattgt tataaaaaat tcctgttctg cccacaaact cataggaatt tgttctatta
     4921 aacaaaacat ctccataatt taacctaaaa gtttgcaatt catttttatc aattaaagca
     4981 tattttttga cttcaaaatt acaaagcata ttatcaatgt cattcattct ataaataggg
     5041 ataccatcgc cctcttcatt catatttatt gaaataccat attgagattt taataaacat
     5101 tctcctattt ttttatagtt caacttattg ttataaataa gcttcattgt ccaaaaacta
     5161 tcatctatgc gaaaatctat attttttttc acttcactaa gctttaatac acttacttct
     5221 aaatgtggat atttttcctg caaagtttgg tttagattca ttttattcct ttttttattt
     5281 caatctaagt aaaaaatatt tataattata aagctcaact accggtggta gaaagagatg
     5341 gctagctttt atgcttcttg cagatgccta aatctgcacc aaacccctaa aaccattcgc
     5401 aattctttag ctctatatca tttccgttta tataatttct atatcttttt tcataaatat
     5461 ttttattata tcctttatct atgtagaaac ttgtcactaa aaatgaacta cttctgccta
     5521 gcttttgtaa aataactata aaattatggt tatataacca caaataaaaa cggattgccc
     5581 gtttctcttt ataataaaaa gctttaattt cgggatgagt atgattgata ataatttgtt
     5641 taatccaatt tattctgcaa gctctttggc tatcaaactc ccttgtttta ttttgtttgt
     5701 tttctcgtgt tgtgatatgc caaaatatct tttctttccc cttatgcttc ttatgtgatt
     5761 gcggatctat ataaatacaa cctgctaaat acaatggaac ctcaataaag tcttgtttga
     5821 aaattttata agctaagtca aatttttcat tttcacattt acaagtgcta aaatccaaga
     5881 ggtgatacat tattgttcac ctttactcaa ttgaatccta aaaatattaa atttattttc
     5941 ccaaggtggc gttcctgcat ccaattcaat atttgccaat gtttcaattt tatttataat
     6001 ataatttttt atttcgctta catgctctat atcatttctt gctttgtatg aaatagcacc
     6061 tattaacaaa tccacaagtt gaacaatatt tgattcatgt gattgaattg taaaaatttt
     6121 tatatttact gattgtttaa atttattaaa caaaactttt tccaatcctt ttattttatc
     6181 tccactcttc gtatctttat aatcaagata tatttttatt tttgtatcaa tatctattaa
     6241 attatgcaat gcttgataat acattttata ataaaataaa tcatgatctc cttgattgta
     6301 aatatcatgt tgtagaatgg ttttatttgg aattaataca gctttaaacc acatatatac
     6361 agaagaaaaa aagaattcta ataattcatc ataaaaacct ttttgactta aatttagttt
     6421 tgtccattta atttctttat tatatttgta tttatgcttt aaatatttaa ttgttttatt
     6481 aattttaata atttcagatg atggaacttt aagcgctcct aataccataa cccttgaaca
     6541 caaagttgga ttatctttgt aaaataaatg attgctttca tcgcaaaaaa ttttaaattc
     6601 tttcatatta ttcattcact tattctttcc aaaaactcaa attttctgct tttgcaaatt
     6661 caataaaagc ttcagctatg ccatcttttt gcaagtcttt atatttttct acatttaatc
     6721 tatattcttg tattcttttg tcaaactctt cttggctttc atctttttgt tttataggct
     6781 catctccttc taaatgcgga tgaaataaat catgttttac tactaaatga tcatgagaat
     6841 ctaaaagtgg gtaataaatc ttttcgcctg aattatcttt actaggctca ttcatagtag
     6901 caaagaagat attatagtcc tcacactttg gacataattt atcatcccat ttttgtaaaa
     6961 ataaaacact tgtttttgtc cccgtgtgtg gcttaaagac atttccatga agtcctacaa
     7021 ccgctaagat tctagctttt tgtgcgataa attctcttat atatttatcg cttgaattat
     7081 taaaacgccc ttgtggcaat acaatagcca ttctaccacc aggctttaac atatctaaat
     7141 ttcgttcaat aaataaaata tctcttccta ccttactttg aggtttgcca ttttcttttt
     7201 tgcctagctc atatctagct aaaattctac tctcttttat atctcctgca aaaggcggat
     7261 ttgccattaa aacatcaaaa ttaaaatctc tattttgatt tttagttact cttaaatttt
     7321 ttaagcgttt aaaaccttca aaatacacat cttgccaatc ttcatcatct tttacccact
     7381 catcccatct atcaaagtca atggaattta aatacaaaac atttgtatgc ccatcacctg
     7441 caattagatt aagcattttt gatacgcgca cactcttttc atcaaaatct ataccaaaca
     7501 ctttttcttt tacataatct tgacactcag aaatcttttc ttgggctgta aagagatgac
     7561 ttgcttctat gcctctttct ttataaattg aacgccacac ataaaaacaa gtatgtatcg
     7621 gaaatccaca acttccactt gcagtatcta tcatactttc atcttttttg ggatttagca
     7681 tttttacaca catatctatt acataacgcg gagtaaaata ttgccctttt tcaccttttg
     7741 aggatttatt cactagatat tcaaaagcat catcaatcac ttctaaattt gagttaaata
     7801 actttacatt ttgcaatgat gatacacata cacttaggtg cgaaggagaa agtttaattt
     7861 tctcatcatt attaaataca ccttcccatt ttttctttgc tttatcaaag agtttttcta
     7921 ttttttgctt aagttcagaa tcagaccctc cataatttct aaactctaag ctctttgttc
     7981 tatctcttac accctctagc tcatcaaaaa gttttataaa tataagctta aaacattctt
     8041 caaatacatc aactccagca tttgccaaca cctcatcttc catttctgta actaaattct
     8101 ttaaacttcg cttttgactt tttaaaatat cttctttaat caaatcatca aaggtaaatt
     8161 ttactttcaa cagatccggt aatgtctggt ttgatgcagg aatatttgga atagattcaa
     8221 aataatttgg atcttttcta tgataatagc taatttcttt accattacac cacacagcca
     8281 tagttgcacc tgtagcatta caataacttt ttaattgttc tttgccatct ttcaactttg
     8341 gcttttttac ttctataatg atgtatggga ctgtgatttg gattttatcc attatcacaa
     8401 tatcagccct ttttacttcg cgtccaaaat gcacaccaaa ttcaattttt atcatatctt
     8461 taggatagtt atattcattt aaaagcttat cgatataaag ctggcgcaca atttcttctg
     8521 gcgtaagttt aatttcttta tcgcggataa ggcaattagt atagtatata atttggttat
     8581 ttttgtttgt tttagctata attttagttt ccaattcagc aatagctttt ttactaaata
     8641 gatctagctt ataatcacta tcttttaaaa tttcctcaat cattctaaac ctttaaaaat
     8701 tttctatcaa gtctttaaaa acaagacaaa gtttttcaaa ttcttctata cttacccttt
     8761 catcaatagc gtgaattcta tcattacaaa ccccaaattc tactaccttt acaccgtatt
     8821 ttgcaaaata ccttgcatca cttgtaccgc ctttggtatt aagctctggc acttcatgag
     8881 tgattttttg aacgctttca ttcatttttt gaacgatttt attatcgata tttgtcaaaa
     8941 aagcttcgct tgattgtttt agctctaact catagtttaa accatgacaa attttttcta
     9001 cataactttt tacatcttct aagcttgtat caggggaatt gcgtacatta aacataagtt
     9061 ttaaatcatt tggcgttaca ttacataccc ccatacctcc acgaatatca gttataacga
     9121 tttttgaagg actaaattca gcactacctg gatcaagatc aaaacccgct aaaagcttta
     9181 aaaccggtgc aaaatcatgc acaggattga tacatttttc aggataagca acatgccctt
     9241 gttttccacg gattaaaagt tttccattga tagaaccacg acgccctatt ttgatactat
     9301 cgcccatttt ttttacgcaa gtaggttcag caaccacagc ataatcaggt agcatatttt
     9361 tttctttcat ccattctaaa acagcttttg ttccgtattt tgcctcgcct tcttcatcgc
     9421 ttgttaaaat aaggcttaat ctccgccctt taaagctaac atcctttaca gcatcgataa
     9481 aagcagctac gccacttttc atatcctgtg caccccttgc atagataaag ccttcttcct
     9541 ccaaaggctc aaaaggatca tttttccaac cctcacccgt aggaacgaca tctacatgcc
     9601 caccaaaagc taaatgctca ccctcatcat taaatttctt agtaagcaag agatttttaa
     9661 tcccctcttt ttctataaaa aaagcttcaa aatcactcag ttccatagcg atgaaattta
     9721 aagctccatc atcatttggc gtaacagatt taaattttaa aagttcgatt aaaaattctt
     9781 ttgcattcat ttttttatcc tataaaagtt ttatataata aactcagagc gaaatactct
     9841 ataatcaaag ctgaaactat attgataata cgaatcacct ttgcactaaa aagatagctg
     9901 tattttgcga caacaaaagc taaagcacct atccaaaaaa gaatagcaac aacaagcccc
     9961 agtatcgtag aataagtgtg ttgattgctt aaaactatgc ctgtagcact aagccaaaaa
    10021 cctatcacat aaggattaga gccatttaaa atgatacctt taatataact tttcaaaaga
    10081 ctttctttaa attctttatg ctctaaattt aagctttctt tcttttttct tagcatcaaa
    10141 tacgccatat aagttaaaaa acaaaaacca aaaatcgcca aaaaacgcat aaaaatgaca
    10201 ttgtctaaga aatttaaaag cccaaattga agcaaaaaaa gataaagcat atctatacta
    10261 aatgctccaa gtcctacagc tatggaattt ttaaaagctt ttagtgcata agttaaaatc
    10321 aaaatattta caggtccaaa aggcacactc actccaaagc ccaaaaaaac tccacttaaa
    10381 aaagaatcaa acattaccat ctttcataaa attttctata tcaagtgtga ttttatcaat
    10441 agcgcttata atatcttcta tatagatttt atcaaaatat cgctctaaat tcacatcttt
    10501 ttcataaata tttaaaatac ttttttcaca cattgaagca tactgcccca caggcaaaac
    10561 cgccccactt gtgcctatgc taataaataa tgaagtttga tgaagtaaag aataaagcgt
    10621 agcataagca ggagcttgct cttcaaacat gactatattg tgtcttaaat ccttactttt
    10681 gcattttggg cattgtttat ctgtgaattt ttcatagcct atattaaaaa ttccttcaca
    10741 ttttaggcaa cgaagttcgg gcaaaaagcc atgcaaatga atcacatctt tacaccctgc
    10801 acgctctagc aaatcatcta cattttgcgt gatgacaaaa aggtttttac cccatttttc
    10861 ttttaattgt gcgatttttt catgagcatg atttggcttt acattttgaa gttgtgccct
    10921 tcttgcatcg taaaaatcaa gtactttttt aggatttttt ctaaaacctg ttgcagagca
    10981 aacctccatc acatcgtatt cttcccaaag tccatcatta tctctaaaag ttttaagctc
    11041 acttggagca gacaaacccg ctccgcttaa tatcataatg tttttcatcg ctaaacctta
    11101 taaaatttac aaagtttagc gaaaaatgct ttaagaaaat aaatattttt gcaagatttt
    11161 ttctttttct ttttctaatc tatcaagttc tattttatat tcattgattt ttttctcaat
    11221 cttgtcaatt atatctgcta tttgatcttg aaattctaaa gaaggaagtt taactcttaa
    11281 tgcttttatt ctatctattg aagctctaag ttttcttgaa aatccttgtt ttttaccagc
    11341 ttcatttaaa ataaaactta tgtatttagc atttattttt gtatcatcaa cccttaatac
    11401 cccacaatga tcagttggat aaaacttttt attttttggt ataaatccca ccatccaatc
    11461 tccatctata ccccacaaaa cagaatcatt atcataatct tgcaaaattt ctttattaac
    11521 aaatccaaat acttccaaca catttgcact ataaacagga atttgtccat tttcaagcag
    11581 ctcattattt aaaactcttt ttccaatact tagtttaaaa attggatttg ataaagcata
    11641 ttctttaatt gttttattaa atgatgataa aaattcacta tccaaattta ttttacacaa
    11701 attattaatt ttatctaaaa tagaatttag ttcatattct tgattgtcct ctataatacc
    11761 acatttttga agcattgctt tgattaggtt ttgatactct tttatactca aacttaaagt
    11821 attatactgc tcttctatct tttcacactc tgctacgatt tgtttttgaa tttcaagcgg
    11881 tggttttgga ataaccatat tttgcaagat tcctaaattt atattttgtt gcgaagttgt
    11941 aataacttcg ttatataatt gaaatttaaa ataatcaata gcatacataa gatatttatt
    12001 tataaattct tcatttggaa taatagctac tatagcttga tttgttgtca tatcttcgcc
    12061 taatattcca actctaccaa tagttgcata aattgaaaca acaacagcac ctttttgtat
    12121 catttttgca ttagaattct taaaaccctc tcttgtaatt ttttctttag tatccataat
    12181 aacttgatgg ttagagtaat cgctaattgt tagccactta atatccccat tccaataatt
    12241 tatatttttt cttgatggtg ttcctcccat gaaaaaatct ccacaaattt tcaatttaac
    12301 caatgggtat tgagacttta tttcttctct ttgagttttt ggatttaaac ttatagcttt
    12361 attaaattcc actttttcaa aatctatcat atcaacaagc cttgcttttg tagcataagt
    12421 ctgtaattct tgcgggataa catcaagcgt atttaaaaaa gatttgtaga ttaaagtatt
    12481 aagcttagtc tcattttgtg gattgcctct ttcaaaaagt gggctcaaat aaggctcgtg
    12541 caattctttt aaaccttcat caccttttct attactccac tcataaccta aaaatttctt
    12601 ttgttctttt atatcacttg gggattttat gattaaaact tcttgattaa gacttagact
    12661 aaaataaagc aatttatcct tttctattgc ctgagcataa gctaaaaagg ctttatcttc
    12721 taaatcttgc ttatctttac tttctttata aattttagat tctttaagtt ttttataatc
    12781 acttgtttgc ctaaatgcat tgcgataatc tttaaaggct tctaactctg caagattaaa
    12841 atctaagttt ccatttaaaa aattactata aagctcttta tcaaattttc taaaatcaca
    12901 atatgcactt agataatttt gataaaagtt ttcattgtct
//
LOCUS       DAEDTT010000046        12838 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.046, whole genome shotgun sequence.
ACCESSION   DAEDTT010000046 DAEDTT010000000
VERSION     DAEDTT010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12838
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.046"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..517
                     /locus_tag="KLC54_000941"
     CDS             <1..517
                     /locus_tag="KLC54_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="catalyzes the oxygen-independent formation of
                     protoporphyrinogen-IX from coproporphyrinogen-III; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HBD9177327.1"
                     /translation="LSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQLLELDFFQYE
                     ISNFSKTKSQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLKNYIENPTFRSI
                     EQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYKNKRYFNPNFL
                     ISDELALYLSS"
     gene            576..983
                     /gene="tatB"
                     /locus_tag="KLC54_000942"
     CDS             576..983
                     /gene="tatB"
                     /locus_tag="KLC54_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HBD9177328.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDNTKNNLSGQNLNTEEKPNLSKLETQDKTEK"
     gene            984..1721
                     /gene="tatC"
                     /locus_tag="KLC54_000943"
     CDS             984..1721
                     /gene="tatC"
                     /locus_tag="KLC54_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HBD9177329.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAILVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDKESDE"
     gene            1714..2742
                     /gene="queA"
                     /locus_tag="KLC54_000944"
     CDS             1714..2742
                     /gene="queA"
                     /locus_tag="KLC54_000944"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HBD9177330.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLQDFLPNCAIFFNDTKVIKARIYGNKVSGGKIELFLHQPFLNSHNPLFLAQIK
                     GRVKKDEILYFKKDLKIRVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYARTKTKSG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(2731..3696)
                     /gene="lpxD"
                     /locus_tag="KLC54_000945"
     CDS             complement(2731..3696)
                     /gene="lpxD"
                     /locus_tag="KLC54_000945"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HBD9177331.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAIKFKEKSQD"
     gene            complement(3693..4157)
                     /gene="ilvN"
                     /locus_tag="KLC54_000946"
     CDS             complement(3693..4157)
                     /gene="ilvN"
                     /locus_tag="KLC54_000946"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HBD9177332.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            complement(4154..5854)
                     /locus_tag="KLC54_000947"
     CDS             complement(4154..5854)
                     /locus_tag="KLC54_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HBD9177333.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYPKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELVKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKTINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISNKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            complement(5872..6315)
                     /locus_tag="KLC54_000948"
     CDS             complement(5872..6315)
                     /locus_tag="KLC54_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HBD9177334.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            complement(6327..7346)
                     /locus_tag="KLC54_000949"
     CDS             complement(6327..7346)
                     /locus_tag="KLC54_000949"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HBD9177335.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEARGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            7439..7513
                     /locus_tag="KLC54_000950"
     tRNA            7439..7513
                     /locus_tag="KLC54_000950"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7471..7473,aa:Gln,seq:ttg)
     gene            7548..7623
                     /locus_tag="KLC54_000951"
     tRNA            7548..7623
                     /locus_tag="KLC54_000951"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7581..7583,aa:Met,seq:cat)
     gene            complement(7645..8517)
                     /locus_tag="KLC54_000952"
     CDS             complement(7645..8517)
                     /locus_tag="KLC54_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HBD9177336.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLTFMPIKKENGRYVLESFALGKLSFKDIQNFATLSGIAKLYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLIFFYKEKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKFRTKNENFIPNEKLEEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNYQIIDEDETSYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKTR
                     LENILKSYLNNLSK"
     gene            complement(8514..9567)
                     /locus_tag="KLC54_000953"
                     /pseudo
     CDS             complement(8514..9567)
                     /locus_tag="KLC54_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            complement(9576..9881)
                     /locus_tag="KLC54_000954"
     CDS             complement(9576..9881)
                     /locus_tag="KLC54_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177337.1"
                     /translation="MFSKIFSSLSLANAFKGFLFKRISSPMQSARIISMVLDIKNAFN
                     DSKDQASSICKTLDLIVNFKKEHPQDFNELFEILKDLIQEYEQNPNEIKQNLKEILK"
     gene            complement(9888..10338)
                     /locus_tag="KLC54_000955"
                     /pseudo
     CDS             complement(9888..10338)
                     /locus_tag="KLC54_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004316478.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(10342..11124)
                     /locus_tag="KLC54_000956"
     CDS             complement(10342..11124)
                     /locus_tag="KLC54_000956"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177338.1"
                     /translation="MLELITQKDQDFLQNIENLDEEYIQKFINKKISEIAIAIETAAE
                     NADKAKDRTQKAKNLNTDSDWQTYIPIFGRWLGETSEEKKEIKSNMILEAAELQNESM
                     NQMTTILKEVVIFFTSSFCIATRMNQALSLIIAQGFVKSDGKVIRLSKAAKEQFQQIQ
                     KFTLSFIEDHEKHKDTINNIQVELDKKNQIDDEQYKLIEKHYQEFIQYKNYNDKIVQE
                     QECKINELKDILNKRKNVFTNSISILALIVSVASIVLYFIGR"
     gene            complement(11124..11990)
                     /locus_tag="KLC54_000957"
     CDS             complement(11124..11990)
                     /locus_tag="KLC54_000957"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177339.1"
                     /translation="MKIFVYSAFGVVLKDFIEAVVIELKTTFREFGKENIKEIFKRFA
                     RRMEKVWEKIKAKWKDIFKGSLEAGIQAFFSNLLVFIINTIFTTLKKIVQIIRAGFTS
                     LYQAVKIIINPPKNIPKDEIYFEASKIFVSGMISAISMLGSEMIHKFLLSIPGFNVFL
                     SLPIPFTDETIGDALSLCISAAGGAVLSTIAIFYMDKWRSNSKIGNLQIQIVTQKNLI
                     VQYKIAKTWFALNDAYHIVKNETLATIQQIKKDNQIREQSSQEVETAIEEFENCNITK
                     KLYKKLNQTKEN"
     gene            complement(12062..12806)
                     /locus_tag="KLC54_000958"
                     /pseudo
     CDS             complement(12062..12806)
                     /locus_tag="KLC54_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855141.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         4085 a         2241 c         1726 g         4786 t
ORIGIN      
        1 ccttagtgct tataatttaa ccatagaatc aaacacagcc tttgccaaaa aagaacattt
       61 caaaaaaaat gctcctaatt taatgaaatt ttttatcaaa caacttctag agcttgactt
      121 ttttcaatat gaaatcagta atttttcaaa aactaaatct caaatttgca agcataatct
      181 tgcttattgg caaggaaaaa actacctagc ttgtggatta agtgcagtag gattttatga
      241 aaataagcgt ttttatacag caaaaaattt aaaaaattac atagaaaatc ctacttttag
      301 atctatagag caactaagct ctaaagactt gaatttagaa cacctatttt taggacttag
      361 aagtatagta gggattgatg aaacaaaact caatcaatgg caaaaagaca aaataaatat
      421 attattaaaa gaaaaaaaac ttttttacaa aaataaaaga tattttaatc ctaattttct
      481 cattagcgat gaacttgctt tatatctctc atcttaaatt taagtttttt aagtaaaata
      541 tttatttaaa atatcaaatt aaagagtaac gattaatgag ttttggtgaa attatagtta
      601 ttttagttgt agcgatttta gtcttagggc ctgataaact tccagaagct atagtacaaa
      661 tagcaaaaat tctaaaggct gtaaaacgca acatagatga tgcaaaatca agcatagaaa
      721 aagaaatacg catcaatgac ttaaaagaag aagctaagaa atacaaagat gaattttcaa
      781 gcactaatga aaatatacgc aaaaaactca gttttgaaga atttgatgac cttaaaagag
      841 atattttaga taaaacaaag gtagatttaa cctttgatag cagagatgat aacacaaaaa
      901 ataaccttag cggacaaaat ttaaatacag aagaaaaacc aaatcttagc aaattagaaa
      961 cacaagataa aacggaaaaa taaatgtttg aagaattaag acctcattta atagaactta
     1021 gaaaacgcct ttttataagc gttgcttgca ttgtagttat gtttattgta tgttttgctc
     1081 tacgaagcta tatcttagat attctaaaag ctccacttat agctgtttta cccgaagtag
     1141 ccaaacatgt gaatgtaatt gaagtacaag aagccttatt taccgcaatg aaggttagtt
     1201 tttttgcagc ctttatcttt tctctacctg taattttttg gcaattttgg aaatttgtag
     1261 ctccaggact ttatgataat gaaaaacgcc ttgtggtgcc ttttgttagc tttgcaagca
     1321 ttatgtttgc cttgggggct tgtttttgct attttgttgt agtgcctttg gcttttaaat
     1381 ttttgattaa ttttggttta aatgaagatt ttaatcctgt gattaccata ggaacttatg
     1441 tagatttttt taccaaagtt gttgtggctt ttggcttagc ttttgaaatg cctgtaattg
     1501 cctttttctt tgctaaaatt ggacttatag atgatagttt tttaaaacgc cattttcgca
     1561 tagctatttt agttattttt gttttttcag cctttatgac tccacctgat gttttatctc
     1621 aatttttaat ggcaggacca ctttgcggac tttatggact ttctatttta attgttcaaa
     1681 aggtaaatcc tgctccaaaa gataaagaaa gtgatgaata aagacttact tctttcaagc
     1741 tatgattaca ctctagctaa tgaactcata gccaactatc ctacaaatcc aaaagaagat
     1801 gctaggcttt tggtttttga tcgcaaaaac aaagaaattt ttcatactac ttttaaaaat
     1861 ttacaagact ttttacccaa ctgcgcgatt tttttcaatg ataccaaagt tattaaagca
     1921 agaatttatg gcaataaagt aagcggagga aaaatagagc ttttcttgca tcagcctttt
     1981 ttaaattctc acaatccact ttttctagct caaattaaag ggcgtgttaa aaaagatgaa
     2041 atcttatatt ttaaaaagga tttaaaaata cgcgttgtag aacttttaaa tgatggtctt
     2101 cgaaaagttc aattttttca aaatgataaa accttagaca cctcaaatct ttacaacctg
     2161 cttgacaaga taggacatat acccttgcct ccttatatta aaagggagga tgaaaaaagc
     2221 gatttaaaag attatcaaag tatctttgca aaaaatttag gcgcagtggc tgctccgact
     2281 gcaagtttac attttagtga gactatgctt gaaaatttaa gaaaaaaaca cgaaatttat
     2341 catttaacct tgcatgtagg agctggaacc tttaaaagcg tggaatgcga aaatatacaa
     2401 gagcataaaa tgcatagtga attttttaat attccgcagc aagcatgtga aattatagat
     2461 tctaaacaag ctattttagg cgtaggaaca acggtaacaa gaaccataga atattatgca
     2521 agaactaaaa caaaaagcgg tttttgcgat ctttttttac acccgcaaaa tccacctata
     2581 agacaaaatc atcttttaac caattttcat ttaccaaaat ctactcttat catgctagtt
     2641 tcagctttta tcggtagaga acagtgttta aaactttatg aactcgccat aaaagaaaaa
     2701 tatcgctttt actcttatgg cgatgcgatg ttaatcttgt gatttttctt taaattttat
     2761 tgctatttta gcttgaagtt ttagccaatc tttttgaagc atgataggaa aacctccata
     2821 aacacgcccg ccttctaaat ttttactcac accacctctt gcagctatag tgctaaaatc
     2881 gcctattttt aaatgtccac tcgttgcact ttgaccaccc ataataacat tgcgtcctaa
     2941 ctcacttgaa cctgaaattc cagtttgcgc cacaatgatg caattttgac ctatattgca
     3001 attatgtccg atttgaacta gattgtctac cttagtacct gctttgataa tagtactatc
     3061 aaaaactgct ctatctatag ttgtacaagc ccccacttct acaaaatctt ctaaaaccac
     3121 attaccatta tgataaattt tataatgttc gccgttttta ttgtgcgcat aaccaaaacc
     3181 gtcacttcct attacacaat tggcaagcaa atgacatttt ttaccgattt tagtgtcatt
     3241 ataaatcact acattaggat ggataatact ctcatcacca atgctgacat tatcgcctat
     3301 ataagctcct gccataataa ttacattttc accgatattt acattatcgc ctatataaac
     3361 attaggcatg attcttgcgc tttttgcgat attttgtact ttttctttag ctgtgcttat
     3421 caaaggttta gcaaaaagct tgcttaaaaa agcaaaactc aaatgtggac tttgagtaat
     3481 caaagcttta gtatctttag gtactaaatt ttcatattct ttagatacta aaatagcagc
     3541 agctcctgtg tgaggtatat ctttggtatt tttctcacca tcacaataag taagctctgt
     3601 aaaatttgct ttcaataaag aatttaaagc actgatttct atatcctcgc ctttatattc
     3661 caagcttaaa aattctgcta tttcacttaa tttcatttaa tctccatcaa aacagatcca
     3721 ctgcgaacta tatcactagg attgtatttt ttaattgttt ttaaaaaatt atcaattcga
     3781 tttgcatcat cagcaaccat taaaaacaaa aaattctcat tgctatttgc aatagtacca
     3841 ttataagctt tcaaaacggc atcaagtcca cctaaatttt catttaaagg aattttcacc
     3901 aaagccattt ctttgtcaat aaattcttcg ctttctatca ctttataagt aggaataagc
     3961 ttatgaagtt gtttgactat ctgctcaaaa gttctttcat ttcctgaagt gactatatta
     4021 atacgagaaa attctttatt ttccaaaggt gctactgtaa gcgagtcaat attataacct
     4081 cttcctgaaa aaagtcctac tatacgagat aaaaccccat gctcatttaa aacaattacc
     4141 gataaaaccc ttctcattgt ctatcctttg cctttggtaa aatcatatta taaatcgcac
     4201 ctcctgcagg caccataggt aaaacatctt caaagcgatc aatttttaca tttaaaagag
     4261 aggttttatc actttttaaa gcttggctaa aagcttgaat gaattcttct ttgtttgaaa
     4321 tttcataacc ttcacaacca aaaccttgag ctattttgat aaaatcaggc tgagtgctta
     4381 aatcagtttg tgaaaaatgc tctttataaa acatactttg ccattgtctt accataccta
     4441 aaaaggcatt atttaaaata atatttatag tttttatacc atactcatag gcagtcataa
     4501 gctcttggat attcatcaaa accgatccat cacctacgaa attaatcacc acttcttcac
     4561 ccacagcaag ttttgcaccc aaagccgcag gtaaagaata tcccatagtt ccttgccctc
     4621 cacttgttgc aagttgtctt ggataattaa aaggataaaa ctgcgccacc cacatttgat
     4681 gctgacccac atcagtaata atccttgcat ctggagccat tttcgcacat tcttcaatca
     4741 cccattgcgg ttttaaaatc tcattgctat cttcataaga aagcggataa agttcattat
     4801 aacgctttaa agtttcgtgc cattctttaa aagttgtgtt gaaattttcc tttttaagct
     4861 cttctaaaag ctctttaaga acttctttaa tatctcctac tataggataa tgcgcattga
     4921 taatctttga aatagaacta ggatcaatat caacatgaac tatagtcgca tgtttagcaa
     4981 attcacttgt ttttcctgta atcctatcat caaatctcgc tcctacactc acaagcaaat
     5041 cacactcact taaagccata ttagcagcat agcttccatg catgcctgcc attttaagat
     5101 taaaaacatc atcacttctt aaagttccaa gcgccatcaa ggtttcaact gctggaattt
     5161 ttgtaaattt tacaagctct ctgatttgct cacttgcatt agaactgata catcctccac
     5221 ccaagtaaaa caaaggtctt tttgcttctt ttaaaagctc tgcaaatttt ttaatttgct
     5281 ttgagttacc cttataaacg ggcttataag ttttcataga aatttcttta ggatattccc
     5341 aaagtcccaa agttgcactt acatcttttg gcacatctat atgcacaggc ccaggtctac
     5401 cacttcttgc tatataaaaa gcctctttta aaatgcgtgg aaactcttct atgcaagtaa
     5461 ctaaataatt atgcttcacg caaggtcttg aaatgcctac tgcatcaatt tcttgaaaag
     5521 catctgtacc aataagagaa tttgccacct gccctgaaat caacaccaaa gggatagaat
     5581 cactataagc cgtagctaga cctgtaatag tatttgtaaa acctggtccg cttgtaacta
     5641 tagctacgcc cacttctcca ctcattcttg cataagcatc agcagcatgc aaagctgctt
     5701 gttcatgacg cactaaaata tgtttaaagt acttttgatt gtaaatttca tcataaatat
     5761 taagcgcagc gcctccagga taaccaaaaa caattttaac attttcttct tttaaagcct
     5821 cgcaaatcat tgctgaaccg cttaactctt tcataataac actccaaaaa attattgtaa
     5881 aagctcttta agtgctaaat taagtctttt gccatcaaca ctcgcaccta attttatttt
     5941 agcttctttc attaccaaac cttgttcttt tagtgaactt acacccaatt cttctataag
     6001 ttgttttaag gctaaagtta actcctcatc acttagttgt ttaggcaaat aaatttcaaa
     6061 aagacttatt tcattttgtt ctttttgtgc taaatcttca cgatttgcct taagataaag
     6121 ttcgattgcg tctttgcgtt ttttgatttc acttgcaatg attttataaa ttctttcatt
     6181 atctaattct attctttcat ccacttctat ttgcttaaaa gctgcattta gagttcttaa
     6241 actatctctt ttaaaatcat ctttttgttt cattgcctct ttgatatcgt ttaaaatttg
     6301 ttcttttaaa gtcatttttt tcctttttag ttaaaattac aagctttaag gtttaaacca
     6361 aaaccttcta agcctatata gtctttatca caactttgag ataaaagttt aatttcttct
     6421 ataccaaaat atcttaaaat ctgtgctcct ataccatagt ttttgtattg agtggtactg
     6481 gatttttctc cttgcatgaa aactataacg ccaccatttt cactaagaaa tttgatttgc
     6541 tctaaaagtt ttgaaaattt atctgaagtt aaaagctcaa aatcactacc actgatatga
     6601 aatttaacat tttcacattt tttaatatct ttaaagcaaa aagctatgtg ttgggtttga
     6661 ttatgatcgc taaagataaa tttttctgct ttaaagcctg ctaaaacact ttgacttttt
     6721 tcttcaagct taataaggct ttcatgtttt aggcgatatt ctataagatc gcttacggct
     6781 atcatgttta gatcatgttt ttggcaaaaa atttctagat cttctcttct tgccatatct
     6841 ccattatctt ttacgatttc acaaatcaca catgcacctt ttaatcctgc taatttacaa
     6901 agatcaaccg tgccttctgt atgacctgtg cgttctaaaa ccccaccttt ttttgcgatt
     6961 aaaggattga tatgccctgg tcttacaaaa tcactcgctt tagcattatc gtcagcaaaa
     7021 atttgtatag tcatatttct ttcataagca ctaactcctg ttgtagcatc ttttgcatct
     7081 acggttatgg taaaagcagt ttcgtggttt gaagtatttt taggcaccat taaaggaagt
     7141 tcaaattttt ttgccaaagt ttcatctaag gctacacaaa ccacaccacg agcttctttt
     7201 atcatgaaat ttactttttc ttgagtgcta aattgcgcag gaaagattaa atcgccttca
     7261 ttttctctat cttctgcatc taccataaca agcatttttc ctgcttgtaa atccttaatc
     7321 gcttgttcta cgctaacaaa tttcattttt atttccttaa aatttttaaa attataactt
     7381 aaattgcttg acaaataaat taaaattcat tataatcaca cttttaaaaa atatttattg
     7441 gggtatcgcc aagcggtaag gcaacaggtt ttggtcctgt cattcagggg ttcgaatccc
     7501 tttaccccat ccacttctta ttttatattt caaagtatct tatatgccgc gaagtagagc
     7561 agtggttagc tcgtcgggct cataacccga aggtcgggag ttcaaatctc cccttcgcaa
     7621 ccagttatgg atttaaaata aattttattt agatagattg tttaaataac tttttaaaat
     7681 attttccagc cgtgttttca gttctatagg ggctagaatt tttatataag gaatccactg
     7741 cttaaccaaa tgcaaaattt catcttcata ggaaacttga gtgcttaaag tatagcttgt
     7801 ttcatcttca tcaatgattt gataattact tagtatttct tttctaaaaa aatattcctt
     7861 agcattttta tcaagtttta aaatcacttc tttactttct ccaagccaga tattaggatc
     7921 attttggatt tgttcctcaa gtttttcatt gggaataaaa ttttcatttt tagtgcgaaa
     7981 ttttgaaatt ttatccaaat taaaatgttt taatttatca ttttcatccc ctaaaagata
     8041 ccaaattcct ttgtaattta cgagtttgta aggtttgatt tggcgttctt tttccttgta
     8101 gaaaaaaatc aatacattgt gtttgagtat agctacacta agatctttaa aaagctcata
     8161 atccaccttt tgaaaacctt cgttttttac catcaaaact ttatttaccc tatggcttaa
     8221 aagatcaact ataaagcctt gatcgagttt tggataaagc ttagcaatac cacttaaggt
     8281 ggcgaaattt tgtatatctt taaagcttaa ttttcccaaa gcaaagcttt ctaaaacata
     8341 tcttccattt tcttttttaa taggcataaa agtaagtctt tcgttaagat ctctttgtat
     8401 ggttcttgta tcgacattaa actcttgtgc aagctcttgg gcgcttagac tttccccatt
     8461 gttaaatttt gataaaatct gcaccaagcg tatgcttaat ttgtcgtatt ctttcatgaa
     8521 atttccttgt gggttaaaat gctttttaac aaacttacgc cttctatacc taaaatttca
     8581 tttctaagtt ttttgacttc atttaaactt ggagcttttg catgaacggc ttcattgcgg
     8641 atttcttgaa tgagagtaag actttttgaa aaaggataat tgataaattg agttaaactt
     8701 tttcctaaat gacattggat attttcatgt ctgagtagaa atttaatact tccaagattg
     8761 ggtttttggg taaaaaaatc tttaagtata aaagatttac cttggacatt ataagctaaa
     8821 tcataaaggc taggatcttt catacaagct tttaaaagaa cttttttggc aaaagcgtaa
     8881 atttcaggag tatttgacta caatgcttgt aaaatcattt aaaagatcgt tttcgctttg
     8941 taaaagctct aattctgcat gaatgatatt gcttatgcta tcagggtgca agagataaaa
     9001 aatccttttg ccaaaaacaa agcgtatgaa attttcttgc atgactaggt attctttgct
     9061 tttatacaca cttagataat gcttttcatc tcctaaaaaa taagaacact cttcttttaa
     9121 tctcacaggt aaaggatagg tgtaattatt gccatagata gcataggtgt gatcgtttgg
     9181 ggtgatgaaa ttggctaaaa atttatctct taaaagacta aaatcttccc tgaccaattc
     9241 tcttaaatca ctgataataa aaaagtcttc cacttctaaa tttttttctt tataataact
     9301 aggaatcaaa ctttcatcaa catttttaga aatttttacc accttagcga caaataaatt
     9361 agcataatcg cttaaaaaaa gttgtaagaa attttcttca tttgtacttt ggtaaatttc
     9421 ttctaagaaa ttttgctttt cttgatcgtt gagttttgat ttgattttgc caaaggcaac
     9481 ttgggatttt tcttgtaaaa tgcttaaatg ttgcttgatg acatcttctt gataataggg
     9541 attataaagg attaaaaggt ggttcatgct ttgccttatt ttaggatttc tttgagattt
     9601 tgcttgattt cattaggatt ttgctcgtat tcttgtatga gatcttttaa aatttcaaac
     9661 aactcgttaa aatcctgcgg atgttctttt ttaaaattta ctatcaaatc caaagttttg
     9721 caaatactac ttgcttgatc tttgctgtca ttaaaagcat tttttatatc caaaaccata
     9781 ctaataatac gagcactttg catagggctt gaaatgcgtt taaataaaaa tcctttaaac
     9841 gcatttgcaa ggctaagaga tgagaaaatt ttagaaaaca tctgtcttta tactgtttct
     9901 ttgcaatcta gacaaatttt ttgcccgctt tcgtcgtatt tccaattgtg tcttgtttgt
     9961 cctaatcttt catgtccgca taaattacat ttttcgtgca ttctgcattt tgaatctttt
    10021 ttgatttcat aataattatg aaaattatca aacacttgaa tagaacaaag agtacatcgt
    10081 ctatatccat aacaattatc aggatttaat atttcaggag cttcaaaatc atgttgattt
    10141 ttcacaatca gggcaaattt tggaaaaaaa acattttggt ttatcttttt cattttgata
    10201 ttcacccgcg tgccaaccaa tcccacattt tacttccatt ccaatatctt taacaacttc
    10261 agcagtctta atagttttgt ctttaattgc ttctgaagca tttaccgcct tatcttttaa
    10321 agaacttaaa aaattcataa attaacgccc tataaaatat aatacaatcg acgcaacaga
    10381 aactatcaaa gctaaaattg aaatgctatt tgtaaaaaca ttttttcttt tatttaaaat
    10441 atctttcagt tcattgattt tacattcttg ctcttgaaca attttgtcat tataattttt
    10501 atattgtata aattcttgat aatgtttttc tatgagttta tattgttcat catcaatttg
    10561 atttttttta tctaattcta cttggatatt atttatcgta tctttgtgtt tttcatgatc
    10621 ttctataaaa ctcagtgtga acttttgtat ttgttgaaat tgttctttag cggctttaga
    10681 taaacgaatt accttgccat cgctctttac aaaaccttgc gcaataataa gagataaagc
    10741 ttgattcata cgcgtagcaa tacaaaaact ggaagtaaaa aatattacaa cttcttttag
    10801 aattgttgtc atttgattca ttgattcatt ctgtaactct gctgcttcaa ggatcatatt
    10861 ggatttaatt tctttttttt cttctgatgt ttctccaagc caacgtccaa aaattggtat
    10921 ataagtttgc caatcactat ctgtattaag atttttggct ttttgtgttc tatcttttgc
    10981 tttatcagca ttctctgctg ctgtttcaat agctatagct atttcactga tttttttatt
    11041 aataaatttt tgaatatatt cttcatcaag gttttcaata ttttgcaaaa aatcttgatc
    11101 tttttgtgtg ataagttcta gcatcagttc tccttagttt gattaagttt tttgtataat
    11161 tttttagtga tattacaatt ttcaaattct tcaattgctg tttctacttc ttgagaactt
    11221 tgctctctta tttggttatc ttttttgatt tgttgtatag ttgctaaagt ttcgtttttt
    11281 acaatatgat aagcatcatt caatgcaaac caagttttgg caattttgta ttgtactatc
    11341 aaattttttt gagttacaat ttgtatttgt aaattgccaa ttttggaatt gcttctccac
    11401 ttatccatat aaaaaatagc tatagtgctc aatacagcac caccagccgc tgaaatacat
    11461 aaagaaaggg catcccctat tgtttcatcg gtaaaaggga taggtagtga caaaaataca
    11521 ttaaatccag gtattgacag cagaaacttg tggatcattt cacttcctaa cattgaaatt
    11581 gcagaaatca tcccgctaac aaaaattttc gatgcttcaa agtaaatttc atcttttggt
    11641 atatttttag gtggattaat aatgattttt acagcttgat atagagaagt aaagcctgca
    11701 cgtataattt gcactatttt ttttaaagtt gtaaaaatag tgttaataat aaaaaccaac
    11761 aaattagaaa aaaatgcttg aattcctgct tctaaagaac ctttgaatat atccttccat
    11821 tttgccttta tcttttccca aactttttcc attctgcgtg caaatcgttt aaaaatttct
    11881 ttaatatttt cttttccaaa ctctctaaag gtggttttta attcaataac aacagcttca
    11941 ataaaatctt ttaagacaac tccaaaggca gaataaacaa agattttcat tgaatcttta
    12001 gcacctgtac ttaaaacttc attagaatat ttgacaattt tttcttttat aactttcttt
    12061 tttaggtttg atttggctgt attgtaaatt ttttcagctt ttttttcatc gattccatat
    12121 ttttcaaaat tggtttttcc tgtttttgga tcaatttctt taccccactc cataagatct
    12181 ctatcacctt tagaagcatt agcacttgca tcaagccact taagattgtc agggtgattt
    12241 gctatttctg ccctaattgc atcatctaaa aataaatgca tattaggatc tctatcaatt
    12301 tcctttaaag aaataacatg atctagttgc gctttattct ttccagcacc cctttccatt
    12361 tcttcacctg tgtattcact acgtacaatt tttggagaat tatctcttat attatctttt
    12421 attttatcat agtttgaatc tcgtttatag ccttgttgat attttgtaag cttttgtaaa
    12481 tcttcttctg ttgctacaat acctttttca aagttatgta gtgttgttac attcccacca
    12541 tcttttgcat ttaatattgt tgaagcgagt ccaaaatgcc ctgtcacagc atccatagca
    12601 tttttagtgc attgttcaaa aagtgtttgg gtttgctgtt cgggtaattt ttccattaaa
    12661 tcttcaagtt ctttaagtga attttccaaa cctttatcaa tttctattct tagacattct
    12721 tttttagata aattttccaa ctctttttct aaatccgcat aattggcttt taaatccaat
    12781 tcttctaaat gtatataatt attcatattt taataattcc ttgtttttaa tttttata
//
LOCUS       DAEDTT010000047        12558 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.047, whole genome shotgun sequence.
ACCESSION   DAEDTT010000047 DAEDTT010000000
VERSION     DAEDTT010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12558)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12558)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12558
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.047"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1307
                     /locus_tag="KLC54_000959"
     CDS             <1..1307
                     /locus_tag="KLC54_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HBD9177340.1"
                     /translation="LILMENAGLNLAKLIKKEAKKIRIQRKIKKVKILFLLGGGNNAS
                     DGLVALRNLKHAKAYKIGFKENTLFKKQGQILQNYAFKFCQKEPDFKKFHIIIDCILG
                     TGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGFYPCFKADITLCMGALKEILLED
                     FAKEFVGRIKIANLGISSKKFYPNSQAFLLEKKDLKTIDRKINANKGNFGHIYIVANA
                     SAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKIENNASAIALGMGLENLDFLKDE
                     ILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKEFIKLYKMCFDENLDIETLQKNR
                     FFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLGNQALAKGGSGDVLSGMIAAHLG
                     FGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLIKGLKCL"
     gene            1298..1864
                     /gene="purN"
                     /locus_tag="KLC54_000960"
     CDS             1298..1864
                     /gene="purN"
                     /locus_tag="KLC54_000960"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HBD9177341.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCLCNKKD
                     AFGIQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            1936..2655
                     /locus_tag="KLC54_000961"
     CDS             1936..2655
                     /locus_tag="KLC54_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HBD9177342.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            2648..2857
                     /locus_tag="KLC54_000962"
     CDS             2648..2857
                     /locus_tag="KLC54_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HBD9177343.1"
                     /translation="MAKDANGTELNAGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            2867..4051
                     /locus_tag="KLC54_000963"
     CDS             2867..4051
                     /locus_tag="KLC54_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HBD9177344.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNTLRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFCIINAYNETLKIYKDLAKQYRYKMYV
                     IVFDNSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSSDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKIANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDGGYLRVVTLDKKGFECIEIKNQIYK
                     KK"
     gene            complement(4064..5422)
                     /locus_tag="KLC54_000964"
     CDS             complement(4064..5422)
                     /locus_tag="KLC54_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HBD9177345.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSILMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTIAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWILFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELSHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPIVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(5521..6720)
                     /locus_tag="KLC54_000965"
     CDS             complement(5521..6720)
                     /locus_tag="KLC54_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HBD9177346.1"
                     /translation="MFSSFFASKKWALWAYLGLFLLLFFLYIQTSLNVAINSWYSDFY
                     NVLQKPKIELLDSNSTQKIEENLENNTTLIQEANQRAEQNFQKANFINKGALYYYQNL
                     LEYFFNSRAMIEKPNYSANDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREAMT
                     FSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSLSD
                     VVSKALFANLSENSSFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQKA
                     EAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMIVI
                     VPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSVFITNWTTITQLRSIYKRLKEFE
                     KNISYKS"
     gene            6913..7029
                     /locus_tag="KLC54_000966"
     CDS             6913..7029
                     /locus_tag="KLC54_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177347.1"
                     /translation="MSMKKIILFLLCVGFAFACSEHSHTDFKDLNKTEYNSQ"
     gene            7040..8044
                     /locus_tag="KLC54_000967"
     CDS             7040..8044
                     /locus_tag="KLC54_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HBD9177348.1"
                     /translation="MKKIFFMFLTAFSFLGASELNIYSARHYDADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNANIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLDNLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR
                     "
     gene            8044..9660
                     /locus_tag="KLC54_000968"
     CDS             8044..9660
                     /locus_tag="KLC54_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HBD9177349.1"
                     /translation="MYKTLKYYKLGAILLALFLVLPIFGIFAELFYILFQNFNTSDLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISVGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRIDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALVTALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKIFHMSLLGNSLLVLVFAYVIRFLASAIYSLEGGYNKIHLNIDEASLNLRTSYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            9644..10552
                     /locus_tag="KLC54_000969"
     CDS             9644..10552
                     /locus_tag="KLC54_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9177350.1"
                     /translation="MMLEIKNLSKNFGKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAIARGCKLLLLDEPFSNLDQNLKQDLRRE
                     LKKIIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEKKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFYRLKLRY
                     KNIEFFMLLSSNYNLEEKINFDIINF"
     gene            10588..11793
                     /locus_tag="KLC54_000970"
     CDS             10588..11793
                     /locus_tag="KLC54_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HBD9177351.1"
                     /translation="MKNLLIIGAGGVSRVATAKCAMNSDTFSKITLASRTKSKCDEIA
                     AFIKERLGVQIETAQIDADDSNAVVELIKKTGAQILLNVALPYQDLSLMDACIKAGID
                     YVDTANYEHPDLAKFEYKEQWARNDEFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVM
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(11821..12483)
                     /gene="sodB"
                     /locus_tag="KLC54_000971"
     CDS             complement(11821..12483)
                     /gene="sodB"
                     /locus_tag="KLC54_000971"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HBD9177352.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
BASE COUNT         4514 a         1693 c         1999 g         4352 t
ORIGIN      
        1 agcttatttt aatggaaaat gcaggattaa atttagccaa gctgattaaa aaagaagcta
       61 aaaaaattcg cattcaacgc aagattaaaa aagtaaaaat acttttttta ttaggtgggg
      121 gtaacaacgc ttcagatggc ttggtggctt taagaaattt aaaacacgct aaagcttata
      181 aaataggctt taaagaaaat acgcttttta aaaaacaagg gcaaatttta caaaattatg
      241 cttttaaatt ttgccaaaaa gaacctgatt ttaagaaatt tcatattatt attgattgta
      301 ttttaggcac aggttcaaat cgttgtttag atgaaaaaac aagtttaatc attcaaaaag
      361 ttaatcaaag caaagcttta aaaatagctt gtgatatacc tacaaatttg ggattttatc
      421 cttgttttaa agctgatatt acactttgca tgggagcttt aaaggaaatt ttacttgaag
      481 attttgctaa ggaatttgta ggaaggatta aaatagccaa tttaggcatt agctctaaga
      541 aattttaccc taattctcaa gcttttttgc ttgaaaaaaa agatttaaaa actatagata
      601 gaaaaatcaa cgccaataaa ggaaattttg gccatattta tatagttgcc aatgcaagtg
      661 ctggaacttt agcaggactt ggagccttaa attttggagc aggtcttgtt tctttagtag
      721 cacaaaaaag tttctcgcct cttttgatgt taaaagaaaa aattgaaaat aatgcaagtg
      781 ctattgcttt aggtatgggg cttgaaaatt tggattttct aaaagatgaa attttgcaaa
      841 acactccttt gatcttggat gcaaactgct ttttaagtga agctttgctt tggtatttaa
      901 acagaaaaga tgttgttata acccctcatc caaaagaatt tataaaactt tataaaatgt
      961 gctttgatga gaatttagat atagaaacat tgcaaaaaaa tcgctttttc tatgctagaa
     1021 aattttcaca aaattatgat tgtgttcttg ttttaaaagg agcaaatcct attattgtgc
     1081 aaaaagaaaa attatttgtt gtaaatttag gaaatcaagc cttagctaaa ggtgggagtg
     1141 gagatgtttt aagtggaatg attgctgcac atttaggttt tggttttagt gctttagaag
     1201 cagcaaaaaa tgctacttta gctcatggac ttgttgcaaa aaaatataaa tttaataaaa
     1261 atagctttga cgctttaaaa cttatcaaag gattaaaatg cttgtaaaat tagctgtact
     1321 ttttagtgga aatggaagta atttagaaaa tattttagaa aaacttcata aaaaaaccat
     1381 aggggaaaat acctatgaag tagtactttg cctttgtaat aaaaaagatg cttttggtat
     1441 acaaagggca aaaaaatttg gtcttgatac tgtcattgtt gatcataagg cttataatac
     1501 tcgtgaagaa tttgatacga ttttggtaca aaaaatcaaa gaaagtggag caaatcttac
     1561 tgtattagca ggttttatga gaattttaag tcctgttttt acaaaaaata ttaaggcaat
     1621 taaccttcat ccttctttat tacccctttt taaaggagca catgcgatta aagaaagtta
     1681 tgaaagtgat atgaaagtgg ctggtgtgag tgtgcattgg gtcagtgaag aacttgatgg
     1741 tggaatgatt atagctcaaa aagcttttga aaaaagaaat ttgagttttg aagaatttga
     1801 agaaaaaatt catagcctag aacatgaaat tttaccctta agtgtgattg aaattttttc
     1861 ttaaagaatt aaaggtattt gctttaaaac tataaaatat cgctttaaaa aattttaaaa
     1921 ttttcaagga aatttatgtt tgaatggata tttagtattg atgcttggat tactttagct
     1981 actttaagtg ctcttgaaat tgtactaggg atagataata tcattttttt agctatttta
     2041 gtaagcaaac taccccctga acatcgtgat aaaggacgta tcttaggttt agcttttgca
     2101 atgattacaa gaattttact tcttttatct cttttttggg tgatgaaact tgtaacacct
     2161 ttgtttagtg tattgggcaa tgaaatttca ggaagagatc tagttctttt actaggtggg
     2221 cttttcttga ttgtaaagtc tattaaagaa attaaagagc aaatttctca tcaagaagaa
     2281 agtcaaagtc attttaaagc aagcaataaa ctttggatag ttgtagctga aattgctgtg
     2341 attgatatag tattttcact tgatagtgtt attaccgcag taggaattgc tcaagatgta
     2401 accatcatga ttatcgctgt tattatcgca gtagctgtga tgctttttgc ttctaaacct
     2461 atagcagatt ttgttgaaaa atatccaagc attaaaattt tagccttagc ttttttggtg
     2521 ttaataggcg tagttttagt tgctgaaagt tttgatattc atattgataa ggcatatatt
     2581 tataccgcta tggcttttgc tttagtggtg caaattttaa atattttaga tcaaagaaag
     2641 gaaaaaaatg gctaaagacg ctaatggaac agaacttaac gcaggtgata gcgtgagtgt
     2701 gataaaagat cttaaggtta aaggtgcaag tacaacttta aaacgtggaa ctactataaa
     2761 aaatattaag ctcacttcta aagaaggtga aattgaggct agagtagata aatttggcgt
     2821 tattgtttta aaaactgaat ttttaaagaa aatctaggca aagaatgtgc gaatcttact
     2881 tgttttaaga gggaattatt acgcaggaca agaagaattt atcaaaaata ataaacttca
     2941 aaattataca cttgatttaa atactttgcg tcttttatca ggaagcgtta aaaatatagt
     3001 cagtgaatat aaaattttaa atgttaaaaa tgatgaagat ttgagtaaaa ttttactcaa
     3061 acttctagaa atgcgtatgc aaaaaggtga gttttgcatc ataaatgctt acaatgaaac
     3121 attaaaaatt tacaaagact tagctaaaca atatcgctat aaaatgtatg ttattgtttt
     3181 tgataactct ttaaaacaat gtcaagaaaa aaatctttta gaagctaaaa aaaatggata
     3241 tatcatccct tatgctcttt tggaaaaaac tcaagattta ctcaaaaaaa atccaaaaaa
     3301 atacccaatt ttagactcga gcgactggaa aaaatgtctt taccaaatgc caaatttaag
     3361 caaatataaa aaaattcatc atataggaga tttacaaggt tgttatagtg ttttaaaaga
     3421 atacattaaa acaatcaaag aagatgaatt ttatatattt ttgggagatt atatcaacag
     3481 aggtatagaa aatggcaaag taataaaatt tcttttaaaa atttgcgaaa aagaaaatgt
     3541 atgcttatta gaaggaaatc acgaaagaca tcttataaaa tgggctaatg gagaattgtc
     3601 aaattccaaa gaatttaatg aaaatacttt aaaggatttt agaaaagaaa aacttactcc
     3661 aagagatgct agaaaactct atcctcatct aaaagaatgt ttatactaca aattccaaaa
     3721 taaattcata ttttgttcac atggaggagt aaattttata ccctccaaac ctgaaaaaat
     3781 aagttttata ccaagccatg attttattta tggtgtaggt ggatatgaag acagtcaaaa
     3841 aatagcaaat caattttgta atttcacctc ggacaatctt tatcaaatct ttggacacag
     3901 aaataaagaa aaacttccta tgaaaatagc caaaagagta tttttatgcg agggtaaaat
     3961 agatgatggt ggatatttac gcgtagttac actagataaa aaaggttttg agtgtataga
     4021 aattaaaaac caaatttaca aaaagaaata agcctaaaga ggcttattct tcatctttat
     4081 ttgttttttt aaccacctta acacgctcta tagaattccc atccattttt ttaacttcat
     4141 agtaacaaag ttcatcttca atgcgatctc ctactatagg caagcgtcct aaaagattaa
     4201 atacatatcc acctatagta acttgttcta aatcctcatc atagtttatt acaagcattt
     4261 cttcaacagt ttctatatcg catcgtcctt gaaattcata gatattttca gcaagttttt
     4321 tatagctgtc ttcttcatgc tcgcttttaa tttcgccaat aatttcttcc atgatatctt
     4381 ccatggttaa aattccagca gttccaccat actcatcaac tactaatgca gtatgagagc
     4441 gttctttatt catcattaca agtacttttg aaatactgat attttcagga actaaaatca
     4501 aaggtttaac aaaagtatct aaattttgac ttttatggct taattcattt tgtattatat
     4561 ctcgtatgtg tatcatccct aaaatagtat ctttagaacc gtcaatataa ggaaagcgag
     4621 tatgtttatg ttcacaaatg atttgcatat tttcttcgta acttttttgt ttatttagac
     4681 aaatcatatc ttttctagga gtcataatct ctttagcaac agtatctgaa aaatcaacag
     4741 cattgcgtat gatctctgtt tcaaattcat ctaaaactcc acctttttga ctctcacttg
     4801 ctatgatttt aatttcttct tcgctatgag ttagctcgct ttctttagca ggttttattc
     4861 caaaaagttt caaacttata gctgctaaaa aatcgaaaat tttaatacaa ggcaaaaaga
     4921 gtatccaaaa ccaatgaaga ggtctagcta taaataaaac cgctttatct gcaactgcaa
     4981 tagctatact ttttggcaca agttctccta aaaccacatg taaaagagta ataatactaa
     5041 aagcaataat aaaagctata gtatggataa taacagtgct aaaaccaaga ttaataagcg
     5101 gaatttctag catttttgca atagcaggct cacctatcca accaagagct agagaactta
     5161 aagtgattcc taattgacaa gcactaagat aagtatcaag tcttgaagta acctccaaag
     5221 ctttcttggc accagctttt ttttctttta ccatctcttc aagcttggaa cgacgtactt
     5281 taacaatact aaattcagac aaaacaaaaa aaccatttaa aaacactaga gcaagtgcaa
     5341 caacaaccat aagtatagaa tatcctgcat caaaagatgc tgtagaagtt tggtttaaat
     5401 ccaaaacctg actggggtcc aatgaagctc cttaagaaat aaaatattat taaaccttat
     5461 tatacacaat taaaagtaaa tttaatattt gaattttttc ttgtatttta taagaaaaaa
     5521 ctaagactta taagaaatat ttttctcaaa ttcttttaaa cgcttatata tacttctaag
     5581 ttgagtgata gttgtccagt ttgtgataaa aacactaaaa gagcttcgta cttgatcaaa
     5641 agcattgtta atctgcatta caataccaag tcctatagct ccggcaaaaa gccctggtgc
     5701 catgattaaa aatggcacta taactatcat ttgctcaaat aaaatgagcc aaatattaaa
     5761 atatccataa tgtaaaaaaa gtcttttata gttaaattta agccctgtaa aaagctctat
     5821 catagtctca tttttagcgt attctttgcg attatcctca gcataaacaa gctcttttct
     5881 aaaagctgct tcagcttttt gattgttata ttcaagtcca ggaagcttaa tacctacaaa
     5941 ccacgacaca accaagcctc ctaaagaaat caaaagtgca atataaacaa gcaaaccatc
     6001 aatgtttttt aaaaaataaa aagaagaatt ttcgcttaaa tttgcaaata aagctttact
     6061 cacaacatca cttaaactcc ataaaatcgg gataaatgct acaagggtca tcaaagcttt
     6121 tataaaacta agtcctaaac tctctacgat tttagaaaaa ttataagtat cttcttgaat
     6181 tctttgcgaa cttccttcta tattatcatc tttatttttc caaaatttta aataagaaaa
     6241 agtcatagcc tcacgccact taaaagcata gacgctagca aaatagatat taatcgtagc
     6301 gattaaaaca taaggaatag caatagccaa aaaaactaaa atcaaagcat aaaaatcatt
     6361 tgctgaataa tttggctttt caatcatagc cctagagttg aaaaaatatt ctaataaatt
     6421 ttgataataa tacaatgcac ctttattgat aaaattagct ttttggaaat tttgttcagc
     6481 tctttgatta gcctcttgga ttaaagtggt attattttca agattttctt ctattttttg
     6541 cgtagaatta gaatccaaaa gttctatttt tggcttttgt aaaacattgt aaaaatcact
     6601 ataccatgaa ttgattgcaa catttaagct tgtttgtata tataagaaaa ataacagtaa
     6661 aaaaagcccc aaataagccc ataaagccca ttttttactt gcaaaaaatg aagaaaacat
     6721 gctaccacct tttaaaagaa aaattttaat caactttatt taatcaagag tttattaaaa
     6781 atcataaatt tatcaacaca tgtgtcaaaa ataaacctct ttattcttta aagaaatata
     6841 aaaatataaa gattacgtca tatttacttt ttaatattaa tatttcttat caaaatatct
     6901 aaaaaggaat taatgtctat gaaaaaaata attttatttt tactatgcgt tggctttgct
     6961 tttgcttgct ctgaacattc tcatactgat tttaaagatc ttaataaaac cgagtataat
     7021 tctcaataaa ggataaaata tgaaaaaaat cttctttatg tttttaacag ctttttcatt
     7081 tttaggtgct agtgagctta atatttactc agcaagacat tatgatgctg attttgaaat
     7141 catcaaaaaa ttcgaagaaa aaacaggcat taaggttaat catactcaag ccaaagcttc
     7201 agaacttatt aaaaggcttt ctcttgaagg aagtaattct cctgctgata ttttcatcac
     7261 agctgatatt tcaaatctta cagaagctaa aaatttagga cttttatccc ctgtttcatc
     7321 aaaatattta gaagaattta tacctgctca tttaagggat aaggataagg aatggtttgc
     7381 gatcacaaaa agagcaagaa ttattgctta taataaaaac gcaaatattg acattagcaa
     7441 aatgaaaaat tatgaagatt tagcaaaagc tgaatttaaa ggagaaattg ttatgagaag
     7501 tgctacagct ccttatagca aaactctttt agcatctatt atagctaatg acggaaataa
     7561 agaggctaaa gcatgggcta aaggtgtgct tgacaatctt gcgacaaatc caaagggtgg
     7621 agatagagat caagccagac aagtatttgc aggcgaagct aaatttgcag ttatgaatac
     7681 ttattatata gggcttttaa agaattctaa aaatccaaaa gatgtagaag tggggaattc
     7741 tttgggtatt atttttccta atcaagacaa tagaggaacg catattaaca ttagcggtat
     7801 tgctatgaca aaatcaagta aaaatcaaga tgcggctaaa aaatttatgg aatttatgtt
     7861 aagtcctgaa attcaaaaaa ttcttactga tagtaattat gaatttccta taagaaatga
     7921 tgtagaatta agccaaacgg taaaagattt tggaactttc aaagaagatc aaattcctgt
     7981 gagtaagata gcagaaaata ttaaagaagc tgttaaaatt tacgatgaag tcggttttag
     8041 ataatgtata aaaccctaaa atactataaa ctcggggcaa ttttacttgc cctttttctt
     8101 gttttgccta tttttggtat ttttgctgaa cttttttata ttttatttca aaattttaat
     8161 acaagtgatt taacccaatt ttcatctatt aaagaaaatt tgagtcattt ttttgattat
     8221 ttatttttaa aattcatcaa agatactttt ataattagcg tgggagtatt gtgtttaagc
     8281 ttgattttgg gtgtgagttc tgcttatttg atcgcaaatt atgattttta tttctgtaaa
     8341 attttagaaa aattactcat tttacccttg gccatacctg cttatatttt agcctttgtt
     8401 tatgtgggaa ttatggattt tcaaggattt tttcatgaaa attttggctt taggatagat
     8461 tttttcaatc attatggtgt tatttttgtt ttggctattt ctttatatcc ttatatttat
     8521 ttatttgcta aaacagcttt taaaagtgaa gctaaagagg cttatgaagt agctaaaatc
     8581 atgaaatatt ccgaatttag aatttttaca cgcgtggcac ttttgagtgc aagacctgcc
     8641 attttttctg gagctttatt ggttttaatg gaaactttga gtgattatgg tgcaagtgct
     8701 tatttgggag tggatacttt ttcggctgga atttttaaac tctggtatga tttgaatgat
     8761 tcttattctt ctagtgtttt atcgggtatt ttaatgcttt ttgtattttt gattatgtat
     8821 gtggattatt attataaaaa taaacatcat tatagtttta atcaaaattt agctcttttt
     8881 atcaaaaaaa gaaaattaaa tcctattaaa caaattctat cctgtattta ttgttttatg
     8941 attgcttttg taggttttat tttacctttt atttggctag tttattgggg gttaaaagat
     9001 cataagcttt ttgaatcaca attttatatt atcagttttc aaactataat cttagcttta
     9061 gtcactgctt taattaccac ttttttagct tattttttga tgtttagttc taggatagtt
     9121 aaaaatcatt tttttaattt atttatttta aaaataagtt ctttgggtta ttctatacct
     9181 gctgctgctt tagggattag cattatagtg ctttttgtat ttttggataa aatttttcat
     9241 atgagtttat taggaaattc tttacttgtt cttgtttttg cttatgtaat tcgtttttta
     9301 gcgagtgcaa tttattcttt agaaggaggt tataataaaa ttcatctaaa tattgatgag
     9361 gcaagtttaa atttaagaac gagttatttt attttatttt ttaaaattca cacaccttta
     9421 atgaaacatt ttttattttt ggcttttatt attgttttta ttgatacgat taaagaactt
     9481 cctttaagta gaattttagc gccttttggc tttgaaactt taagtgttaa agctttctgg
     9541 tttgcaagtg atgaaagaat ttatgatgca gctttgcctt ccttgtttat cgtttttctt
     9601 tctttaatgg ttgttgtttg gatggataaa atcacaagga aagatgatgt tagaaattaa
     9661 aaatttatct aaaaattttg gaaaaataca agctttagaa aatatcaatc ttcatgtcaa
     9721 agaaggagaa tttttaagca ttttaggagg tagtggaagc ggaaaaagca cgcttttaag
     9781 gattattgct aagcttgaac aagctagttc ttatgatttg ttttcttgca aaggtgaagt
     9841 ggctttgatg tttcaaaatt atgctttatt tcctcattta aatgttgaga aaaacatact
     9901 ttttgcactt tacgataaaa aagataaaaa tcaaatttta aatcatttgc ttaaaacttt
     9961 tgaaattgaa gatttaagat ataaaaaaat cgatgaaatt tcaggagggc aagcgcaaag
    10021 agtggctttt gctagagcta tagcaagagg atgtaagctt ttgcttttag atgaaccttt
    10081 ttctaatttg gatcaaaatt taaaacagga tttaagaaga gaattgaaaa aaataataga
    10141 aaatcaaggc attacggcta ttatggtaac tcatgatatt gaagatgctt attgtatgtc
    10201 tgatcaaatc gcttttttag aaaaaggaaa aattttagct catgcaaatc ctaaagagct
    10261 ttattttaag cctgatttta aaagtgcgca aattttacct gatttaaata tcatagaaaa
    10321 aaaacttgat ttagaagatg aattttttgc ttggatagct tcaaaaaatt atatttttgg
    10381 ttatgcagaa cttaaaatag gaaatcgctt tgaggctaaa attttacaaa aagaattttt
    10441 aggggctttt tatagactta agttaagata taaaaatata gaatttttta tgttattaag
    10501 ctcaaattat aacttagaag aaaaaataaa ttttgatatt atcaattttt agctaaaatt
    10561 cctaaaaatc ttttaaggac aaatttcatg aaaaatcttt taatcatagg cgcaggtggg
    10621 gtaagtcgtg tggctactgc aaaatgcgca atgaattctg atacttttag caaaatcact
    10681 ttagctagta gaacaaaaag caaatgtgat gaaatcgctg cttttatcaa agagcgttta
    10741 ggggttcaaa ttgaaacggc gcaaattgat gctgatgata gcaatgcggt tgtagaactt
    10801 atcaagaaaa caggagcgca aattttactc aatgttgctt tgccttatca agatttgagt
    10861 ttaatggatg cttgtataaa agcagggatt gattatgtag atacggcaaa ttacgagcat
    10921 cctgatttag ctaaatttga atacaaagag caatgggcga gaaatgacga gtttaaacaa
    10981 gcaggaattt taggactttt aggaagtgga tttgatcctg gtgtaactaa tgttttttgt
    11041 gcttatgcac agcaaaattt atttgatgaa atttcttata tagatatttt agattgcaat
    11101 gcaggtgatc atggctatgc ttttgcgacc aatttcaacc ctgaaatcaa tctacgtgag
    11161 gtttctgcta aagggcgtta ttgggaaaat ggcaagtgga tagaaacgca gccgatggaa
    11221 ataaaaatgg agtgggatta tccagaagta ggcgtaaaag atagctattt gctttatcat
    11281 gaagaacttg aaagcttggt aaaaaatatc aaaggtttaa aaagaatacg cttttttatg
    11341 acctttggac aaagttattt aactcatatg aaatgccttg aaaatgttgg aatgctaggg
    11401 attaaacctg tgatgcacca aggaaaagaa atcattccta tagaattttt aaaaaccttg
    11461 cttcctgatc ctgcgagttt ggggccacgc actaaaggtt ataccaatat aggttgtgtg
    11521 attcgtggta aaaaagatgg aaaagacaag caagtttata tttataatgt ttgcaatcat
    11581 gaagaatgtt acaaagaaac tggcgcacaa gctgtgagct atactacagg tgttcctgct
    11641 atgataggta cgaaattaat cgctaaagga atttggcaag gaaaaggtgt gtttaatatg
    11701 gaagaatttg acgctaagcc ttttatggaa gagctgaatt ctcaaggact tccttggaag
    11761 attatcgaaa tgactccgag tttaggagag taaaaaaggc atcgttttga tgcctttaaa
    11821 ttattttaca gggtgaagtt catttgcata aaagctaact gatcccatgc cttcttttaa
    11881 agcccattcg taagcttttg caacaaattc ccaattaata tgagcataga atttctctaa
    11941 ataagcaggg cgtgcattac gatgatctac ataataagca tgttcccaaa catctacaac
    12001 aagcaaagga actttatctt cagtaattgg tgtagctgcg tttgaagtac ctacaaattc
    12061 tagtttttga tttttagtat tataaactaa ccaaaaccat cctgaaccaa aaactcctgt
    12121 agcacctttg atgaattcag ctttgaaatt ttctaaagat ccaaattctt tttctagtgc
    12181 cgcttgtaaa ttagcatcta tactttgaca tgaaccgcca cagccacagc ctgtacttgg
    12241 cttaatgcaa tcaaaataaa aatcatgatt ataaacttga gctgcgttat taaatacgcc
    12301 cccatttgaa gttttgataa tacttacaag atctttacct gcaaattcag tatctttaat
    12361 aagattattt agatttgtaa cataagtatt gtgatgtttt ccatgatgat agctaaaagt
    12421 ttcagcactc aaaaaatcac caaaagcatt ggtatcataa ggtaattttc ttaattcaaa
    12481 cataatttct cctttatttt tagtttgata ttgaaaatat taccataata atattaaaaa
    12541 gagtaaaaat atcttaaa
//
LOCUS       DAEDTT010000048        12540 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.048, whole genome shotgun sequence.
ACCESSION   DAEDTT010000048 DAEDTT010000000
VERSION     DAEDTT010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12540
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.048"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1010
                     /gene="ccoG"
                     /locus_tag="KLC54_000972"
     CDS             <1..1010
                     /gene="ccoG"
                     /locus_tag="KLC54_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HBD9177353.1"
                     /translation="FKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQNPGEHLLL
                     LGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRGGLIYDGH
                     TKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQSKFNRPSL
                     INWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNINRSSELYN
                     ISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFKLKAGEQV
                     KKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTLIKDKNEL
                     K"
     gene            997..1629
                     /gene="cmeR"
                     /locus_tag="KLC54_000973"
     CDS             997..1629
                     /gene="cmeR"
                     /locus_tag="KLC54_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HBD9177354.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMDFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINGSKA"
     gene            1723..2826
                     /gene="cmeA"
                     /locus_tag="KLC54_000974"
     CDS             1723..2826
                     /gene="cmeA"
                     /locus_tag="KLC54_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HBD9177355.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMARATFENASKDFNRSKALFSKNAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTVGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQSGKWDLDSIHANLNLNGETIQGKLYFIDSVIDANSGTVKAKAVFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQDQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            2826..5948
                     /gene="cmeB"
                     /locus_tag="KLC54_000975"
     CDS             2826..5948
                     /gene="cmeB"
                     /locus_tag="KLC54_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HBD9177356.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGVISLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNDDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALVLAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGESF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLNKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAVANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            5941..7419
                     /gene="cmeC"
                     /locus_tag="KLC54_000976"
     CDS             5941..7419
                     /gene="cmeC"
                     /locus_tag="KLC54_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HBD9177357.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSSF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNT
                     KYSYANSIVDVIKAFGGGFEQSEDTSKNIKEESKNLDMSFRE"
     gene            complement(7442..7693)
                     /locus_tag="KLC54_000977"
     CDS             complement(7442..7693)
                     /locus_tag="KLC54_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177358.1"
                     /translation="MDKAKIVQNLNALFKQRAEFYSYFDENIAKINNTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKAYEITDADLDKDF"
     gene            7821..9167
                     /locus_tag="KLC54_000978"
     CDS             7821..9167
                     /locus_tag="KLC54_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HBD9177359.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPKEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKDKGFDFSSMYVGGGTT
                     LINEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQSEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIKDNEFTYYQIIREFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYIFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
     gene            complement(9164..9616)
                     /gene="hemJ"
                     /locus_tag="KLC54_000979"
     CDS             complement(9164..9616)
                     /gene="hemJ"
                     /locus_tag="KLC54_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HBD9177360.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEIVKIQERKLYFYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSAKSGKYFRIYNEFPTIMFIIIALMMVIRPF"
     gene            complement(9600..10070)
                     /locus_tag="KLC54_000980"
     CDS             complement(9600..10070)
                     /locus_tag="KLC54_000980"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HBD9177361.1"
                     /translation="MAKTFKFIFYFWGAFVLVFVLDQWVKSLTLAGLRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIVVLFIYLFWQKTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            complement(10063..11400)
                     /locus_tag="KLC54_000981"
     CDS             complement(10063..11400)
                     /locus_tag="KLC54_000981"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HBD9177362.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPANLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKVNGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLTNLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEAKDIKLLEKEMKNVVEFFKKALNG"
     gene            complement(11494..12519)
                     /locus_tag="KLC54_000982"
     CDS             complement(11494..12519)
                     /locus_tag="KLC54_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HBD9177363.1"
                     /translation="MKVKSLLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGISTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
BASE COUNT         4485 a         1984 c         1903 g         4168 t
ORIGIN      
        1 attttaaaaa atttcttgga gtaataattt tttattttat atctttagtt gctgttagta
       61 atttactttg gtactttatt cctcctgaag attttttcaa ttatattcaa aatcctggcg
      121 agcatctact tttacttgga attttatttt gtgctagctt actttttact ttggatatta
      181 cctatttaca agaaaaattt tgtgtttatg tctgtcctta tgcaagaata caatctgtaa
      241 tgttcgatca tgatacaatg caagtgatct acgatgaaaa acgcgggggc ttgatctatg
      301 atggacacac caaacttcat aaaaaaccgc ctgagggaga atgcataggt tgtgaagcct
      361 gtgttagcat ctgtccaact catattgaca tacgcaaagg aatgcaactt gaatgtatta
      421 attgtcttga atgtgccgat gcttgctcta aggtacaaag caaatttaat cgtccaagtt
      481 tgatcaattg gacaagtgca aaagctattg aaacgcgttc taaggttcat tatttaagat
      541 ttagaacgat agcatatttt atagttcttt taattgcttt attggcttta atcatcatgg
      601 gaagcaaaaa agaaagcatg cttttaaata tcaatcgtag tagtgaatta tataatattt
      661 caaatgttaa aggtgaatta gtcatttcaa atgcttatac ctttttgttt caaaatacag
      721 attctaaacc tcatgaatat tattttacag caaatttaga aggaataaat gatggaattg
      781 aaatcataag accaaacaaa ccttttaaat taaaagcagg agaacaagtc aaaaaaatag
      841 ttgttatcag ggctacaaaa aatttagcaa ataatgataa aaaagatgta atctttcctt
      901 tacatataaa agcttacgca aaggataatg aaaaaatttc ggtttttaga aaaagtatat
      961 ttgtataccc taaaagcact cttataaagg ataaaaatga actcaaatag aacaccatca
     1021 caaaaagttt tagccagaca agaaaaaatc aaagcagtgg ccttagagct ttttttaaca
     1081 aaaggatacc aagaaacaag tttgagtgat attattaaat tatccggagg atcttattct
     1141 aatatttatg atggttttaa aagtaaagaa gggctattct ttgaaatttt agatgacata
     1201 tgtaaaaaac actttcatct tatttattcc aaaacacaag aaattgaaaa tggcacttta
     1261 aaagaaattt taacttcttt tggtttagct tttatagaaa ttttcaatca accagaagct
     1321 gtagcttttg gtaaaattat ctattctcaa gtttatgaca aagatagaca tcttgccaat
     1381 tggatagaaa ataatcaaca aaatttttcc tataacatac ttatggattt tttcaagcaa
     1441 caaaataatt cttatatgaa aaaaaatgca gaaaaacttg ctgttctttt ttgtactatg
     1501 ttaaaagaac cttatcatca tcttaatgtt ttaattaatg ctcctttgaa aaataaaaaa
     1561 gaacaaaaag aacatgttga atttgttgta aacgtttttc taaatgggat caatggctcc
     1621 aaagcttaaa aataatttta ttaaccaaaa ttaagatata attagccaaa aatttttgta
     1681 ataaatatta caatttttaa tttaattttt caaggcaaaa ccatgaaatt atttcaaaaa
     1741 aatactattt tagctttagg tgttgtgctt ttactcactg cttgtagcaa agaagaagca
     1801 ccaaaaatac aaatgccgcc tcaacctgta acaaccatga gtgctaaatc tgaagattta
     1861 ccacttagtt ttacttaccc tgctaaactt gtcagcgatt atgatgtcat tataaaacct
     1921 caagttagtg gcgtaatagt aaataaactt tttaaagctg gggataaggt aaaaaaagga
     1981 caaacattat ttattataga gcaagataaa tttaaagcta gtgttgattc ggcttacgga
     2041 caagctttaa tggctagagc aacttttgaa aatgcaagca aggattttaa tcgttctaaa
     2101 gctcttttta gtaaaaatgc aatctctcaa aaggaatacg actcttctct tgctacattt
     2161 aacaattcaa aagctagtct agcaagtgct agagcacaac ttgcaaatgc aagaattgat
     2221 ctagatcata ccgaaataaa agctcctttt gatggtactg taggagatgc tttagttaat
     2281 ataggagatt atgtaagtgc ctcaacaact gaactagtta gagttacaaa tttaaatcct
     2341 atttacgcag atttctttat ttcagataca gataagctaa atttagtccg caatactcaa
     2401 agtggaaaat gggacttaga cagcattcat gcaaatttaa atcttaatgg agaaaccatt
     2461 caaggcaaac tttattttat tgattcggtt atagatgcta atagtggaac agtaaaagcc
     2521 aaagccgtat ttgataacaa caactcaaca cttttaccag gtgcttttgc aacaattact
     2581 tcagaaggtt ttatacaaaa aaatggtttt aaagtgcctc aaatagctgt taaacaagat
     2641 caaaatgatg tttatgttct tcttgttaaa aatggaaaag tagaaaaatc ttctgtacat
     2701 ataagctacc aaaacaatga atacgccatt attgacaaag gattgcaaaa tggcgataaa
     2761 atcattttag ataactttaa aaaaattcaa gttggtagtg aagttaaaga aattggagca
     2821 caataatgtt ttctaaattt tttatcgaaa gacctgtttt tgcttcagtt gttgcaatta
     2881 tcatttcttt agctggagtc ataagtctta caaatttacc tatagaacaa tatccttctt
     2941 taactcctcc tacagttaaa gtaagtgcaa cttacacagg agctgatgca caaaccattg
     3001 cttcaacagt tgcaagtcct atcgaagatg caatcaatgg cgcggataat atgatttaca
     3061 tggattcaac ttcaagttct tcaggaacta tgagtttgac tgtctatttt gatatcggta
     3121 cagatcctga tcaagccacc atagatgtta ataatagaat ttcagccgca actgcaaaaa
     3181 tgccagatgc agttaaaaaa cttggagtaa cagttagaaa aacttcctca acaacacttg
     3241 ctgcaatttc tatgtattca agtgatggtt caatgagtgc agtagatgta tataactata
     3301 tcactttaaa tgtgttagat gagttaaaaa gggttccagg agttggagat gcaaatgcta
     3361 taggaaatcg taattattct ttaagaattt ggctcaagcc tgatttatta aataaatttg
     3421 gaatcacagc tactgatgta atttctgcgg ttaatgacca aaatgcccaa tacgcaactg
     3481 gtaaaattgg cgaagaacct gtaactcaaa aatcccctta tgtttattca atcactatgc
     3541 aaggaagatt gcaaaatcct agtgaatttg aaaacattat tttaagaaca aatgatgatg
     3601 gatcattttt aagacttaaa gatgtagctg atgtggaaat aggatcacaa caatacagct
     3661 cacaaggacg attaaatggc aatgatgcag ttccgattat gatcaatctt caatcagggg
     3721 caaacgcatt gcatacagca gaacttgttc aagctaaaat gcaagaactt tcaaaaaatt
     3781 tcccaaaagg tttaacatat aaaattcctt acgatacaac aaaatttgta atagaatcaa
     3841 tcaaagaagt tgttaaaact tttgttgaag ctttaatttt agttattatt gttatgtata
     3901 tgttcttaaa aaatttccgt gcaaccctta ttcctatgat agctgtacct gtttcattgt
     3961 taggaacttt tgctggactt tatgttttag gttttagtat taacctactt acgctttttg
     4021 ctttggtttt agccataggg atcgttgtag atgatgcgat catagttgta gaaaatatcg
     4081 ataggatttt acatgaaaat gaacaaataa gcgtaaaaga tgctgccatt caagcgatgc
     4141 aagaagttag ctctccggtt atttcaattg ttcttgtgct ttgtgctgtt tttgtaccag
     4201 tttcttttat atcaggtttt gttggagaaa ttcaaagaca atttgctctt accttagcta
     4261 tatctgtaac tatatcaggt tttgttgctc ttaccttaac accttcttta tgcgcactct
     4321 ttttgcgacg taatgaagga gaatcattta aatttgtaaa gaaatttaat gatttttttg
     4381 attggagcac ctctgtattt agcgcaggag tagcatatat tctaaaaaga accattcgtt
     4441 ttgttttaat tttttgtatt atgcttggag cgatttttta tcttaataaa gctgtgccaa
     4501 attctttagt tcccgaagaa gatcaaggtt tgatgattag tattatcaac cttccttcag
     4561 cttcagcact ccatagaaca atttcagaag ttgatcacat aagccaagaa gttttaaaaa
     4621 ctaatggagt taaagatgca atggctatga taggatttga tctttttaca agttcactca
     4681 aagaaaatgc cgctgcaatg tttataggtt tgcaagactg gaaagataga aatgtaagtg
     4741 ctgatcaaat tatagccgaa cttaataaaa aatttgcttt tgatcgcaat gcttcaagtg
     4801 tatttatagg cttacctcct atacctggat tgagtatcac aggcggtttt gaaatgtatg
     4861 ttcaaaacaa aagcggaaaa agctatgatg aaatacaaaa agatgtaaat aaacttgttg
     4921 ctgtggccaa ccaaagaaaa gaactatcaa gagtaagaac aacacttgat acaactttcc
     4981 ctcaatacaa gcttataatt gatagagata aattaaaaca ctacaatctt aacatgcaag
     5041 atgtttttaa cacgatgaat gcaactatag gcacttatta tgttaatgat ttttctatgc
     5101 taggtaaaaa cttccaagta aatatccgcg caaaaggtga ttttagaaat acacaagatg
     5161 cattaaaaaa tatttttgta agatcaaatg atggaaaaat gataccactt gattctttct
     5221 taactttaca aagaagttca gggcctgatg atgtaaaacg attcaacctt ttcccagcgg
     5281 cacaagttca aggtcaaccc gcaccaggtt atacttcagg tcaagctata gaagcgattg
     5341 ctcaagtagc aaaagaaact ttaggggatg attattccat agcttggagt ggatcagctt
     5401 atcaagaagt ttctagtaaa ggaacagcaa gctatgcttt tgctttaggt atgatatttg
     5461 tctttttaat tctagctgcc caatatgaaa gatggcttat acctttagca gttgtaacag
     5521 ctgtaccttt tgcggtattt ggatcatttt tattggtata tttaagggga tttagcaatg
     5581 acatatattt tcaaacagga cttttgctct tgattggact ttcagctaaa aatgctatct
     5641 taatagtaga atttgcaatg gaagagcgct ttaaaaaagg caaaggagtt tttgaagcag
     5701 ctgttgcagc agcaaaactt cgttttcgtc ctatcataat gacttctttg gcatttactt
     5761 ttggggtctt gccaatgatt ttcgcaacag gagcaggaag tgcttcaaga cactctttag
     5821 gaacagggct tattggtgga atgatcgcag catcaacttt agcgatattc tttgtgcctt
     5881 tatttttcta tcttttagaa aattttaatg aatggctaga taaaaaaaga ggtaaggttc
     5941 atgaataaaa taatttcaat tagtgctata gcaagtttta ctcttttgat ttcagcttgc
     6001 tctttaagtc caaatttaaa tattcccgaa gcaaactata gcattgataa taagcttgga
     6061 gccttatctt gggaaaaaga aaacaatagc tctatcacaa aaaattggtg gaaagacttt
     6121 gatgatgaaa atttaaataa agtggttgat ttagcactta aaaataataa tgatttaaaa
     6181 cttgccttca tacacatgga acaagctgct gctcaattag gtatagattt tagcagtttg
     6241 ttgccaaaat ttgatggtag cgcaagcggt agtcgtgcaa aaacagctat aaatgctcca
     6301 agcaatcgaa ccggggaagt aagttacggt aatgatttta aaatggggct taatttaagc
     6361 tatgaaatcg atctttgggg aaaatatcgc gatacatatc gcgcctcaaa atcaagcttt
     6421 aaagcaagtg agtatgatta tgaagctgca agactttctg ttatttcaaa tacagttcaa
     6481 acttatttta atcttgtaaa tgcttatgaa aatgaaaatg ctcttaaaga agcctatgaa
     6541 tctgcaaaag aaatttatag gatcaatgat gaaaaatttc aagttggcgc tgtaggtgaa
     6601 tatgaacttg ctcaagcaag agccaactta gaaagtatgg ctttacaata taatgaagca
     6661 aaattaaata aagaaaatta ccttaaagct ttaaaaattt taacttcaaa tgatttaaat
     6721 gacatacttt acaaaaatca aagctatcaa gtttttaatc ttaaagaatt tgacattcca
     6781 actggaattt caagcaccat cttgcttcaa cgtccagata ttggctcttc tttagaaaaa
     6841 ttaactcagc aaaattatct tgttggagta gctcgcacgg ctttcttacc tagcctttct
     6901 ttaacaggat tattgggatt tgaaagtggg gatttagata ccttggttaa aggaggttct
     6961 aagacttgga atataggtgg aaactttact ctgcctattt ttcattgggg tgaaatttac
     7021 caaaatgtaa atttagctaa acttaataaa gatgaagctt ttgtaaatta tcaaaatact
     7081 ttgattactg cttttggaga aattcgctat gctttagtag ctagaaaaac tatacgctta
     7141 caatacgata atgcacaagc aagcgaacaa tcttataaaa gaatctatga aattgctaaa
     7201 gaacgctatg atataggaga aatgtctttg caagattatt tagaggcacg tcaaaattgg
     7261 cttaatgctg cggttgcttt taataatact aaatattctt atgccaattc catagtagat
     7321 gtaatcaaag catttggtgg aggatttgag caaagtgaag atacgagtaa aaatataaaa
     7381 gaagaatcaa aaaatttaga tatgtctttt agagaatagt ttgttctatt ctctaaataa
     7441 atcaaaaatc tttgtctaaa tctgcatctg taatttcata agccttgtaa atagcaggca
     7501 ataattttct tatagcataa tcaaaatgat aaaattgctt atatacctct tctggattta
     7561 aatttttagc attcttaaaa tcaaatactt cagtattatt gattttggca atattttcat
     7621 caaaataaga gtaaaactct gctctttgtt taaacaaagc atttaaattt tgaacaattt
     7681 tggctttatc cattttatat cctttttaaa taatttaaaa acttaatccc attttttatt
     7741 taagaaataa aaaatttact cctattttag ctaaaaattg ataaagttat gtcttaaata
     7801 ttttaatata taggccactt atgaatttat ttcaaaattt agctttaaaa tactctcata
     7861 ctatgatgga aaaatccctc caaaaaggtt tcaatgtcga acttttaaaa caacccaaag
     7921 aaaaaattcc aaaacaagac aaaagctata tgctttatgc ccatgtacct ttttgccata
     7981 ctttttgtcc ttattgtagt tttcataaat actattatga tgaaaattta gccaaagtat
     8041 attttcaaaa tcttagagaa gaaattaaaa tcatgaaaga taaaggtttt gattttagct
     8101 ccatgtatgt gggtggtggt acaacactga ttaatgaaga ggaattatta aaaaccttag
     8161 aactttgtaa aaagttattt aacataaaag aaatttcatg cgaaagcgat ccaaatcata
     8221 ttgatccaaa taagctttct atgtttaaag gtataattga tcgtttaagt tgtgggattc
     8281 aaagttttga tgatgaaact ttaaaaaaag tggcaagata taataaattt ggttcatcta
     8341 aagaacttca agaaaaaatt tcaaaagctt taggaatttt acctattttt agtatagatc
     8401 ttattttcaa tcttccagga caaagcgaaa aacaactttt aaatgactta gaaattgcta
     8461 aaaatttagc cccgcaacaa atcacaacct atcctttaat gaaatcaaat cttaccaaag
     8521 ataatatcgc taaaagttta ggagtaagca ttaaagataa tgaatttact tattatcaaa
     8581 tcatacgcga attttttaaa gactatactc aaaacaatgg ttggagtttt tctttggaaa
     8641 aaaataaact caatgacgaa tatgtcagtt ctcatcatga atacctagga gtgggcagcg
     8701 gggcttttag ctttttagat ggggagcttt taattaatgc atttaatcta aatgattatg
     8761 ctaaatttat acaagaaaaa caaaatgcta atatagccaa agcttgtttt gataaaaaag
     8821 aaattatcaa atatatcttt ttaactgaaa ttttttcagg gaaaatagaa attgataaat
     8881 tcaacaaaac tctaaattgc aacctcgaaa aagaactttt catagaactt ttagggctta
     8941 aaacaagtgg tgccatcata aaagatcaaa atgctttaat cgcaactgaa tttggtcaat
     9001 atctttttgt ggttttaatg aaagattttt acacaggaat ggatcttgtg cgtgcagtat
     9061 ttagagatga taagcgtctt aaaaataaag attatatcga tatcatgaaa gaaaatattg
     9121 atccgcttaa ctccgctagt atggaattta aagcggagac aaactaaaag gggcgaataa
     9181 ccatcattaa agcgataata ataaacatta tagttgggaa ttcattataa attctaaagt
     9241 atttcccact tttagcagaa gtatcatttg ctaaagcttt taaacaataa taattatgta
     9301 tatgaaaaat aatcaaaagt gtaacacagg taagtttaac atgcataaaa cccgcaccta
     9361 ccattaaaac ttccttatga gcatgtaaca ttaaacttcc tgtgattaaa gttacaatca
     9421 ttgcaggagt ttgtatataa aaataaagtt ttctttcttg aatttttaca atctcgacaa
     9481 aacctttatt gtctttatgt tcagcatgat acacaaaaag acgaggtaaa taaaaaagtc
     9541 cagccatcca agaaacaaat gccaaataat gcacccattt aatccaaaaa taataatcat
     9601 taatccattc tgtcatcttt tttccttttt ttaaatattt cttgtattaa aatcaaagcc
     9661 acacttatat ttatcatgac atctgcaaca ttaaaaatag caaaattaaa ccatttatgc
     9721 caaaaaaaca tatccactac acctccgtgt ataaaacgat ccaataaatt tgaaacgcca
     9781 gcaccaagca tcattccaaa agctatgcta tgagttttta aaagtgtttt ttgccaaaaa
     9841 agataaataa aaagcacgac aattaaagca agatgtaaat attttaaatt atgttctaaa
     9901 aaactcaaca ttgaaaaagc tacgcctgta tttagagcat aagttaaatc taagtattca
     9961 ctctgccatc taagtcctgc taaagttaag gattttaccc attgatcaag gacaaaaacc
    10021 aaaacaaagg caccccaaaa ataaaaaata aatttaaaag ttttagccat ttaaagcttt
    10081 cttaaaaaac tccacaacat ttttcatttc tttttctaag agcttaatat ctttggcttc
    10141 tagtaaaagt cttatcaaat tttctgttcc agaatagcga aataaggtat tgatattttt
    10201 attttctaaa tcttttttta attcttttaa acctttaatt ttatctaaat cttttttttc
    10261 tgcaatttta agattggtta aaagctgagg ataaggtttg acttgaccca aaatagagct
    10321 tgcagatttt ttcttagaaa gcattaaagc actaaattgc aaagcagcta tcaaaccatc
    10381 tccagttttt gcataatcac taaaaataat atgcccactt tgctctccgc caaaatttcc
    10441 accattgact tttaattttt caagcacata tttatcgccc acattacaag tatcaagttc
    10501 tatgccatgt ttatttaaaa attcttttaa agcaccatta ctcattatag tggctacaac
    10561 acttgattgt aatttacctt gttctttaag ataaagtgct aaaaccccta ataaactatc
    10621 tccattagcc acttcgcctt tttcatctac aaccaccaaa cgatctgcat caccatcaaa
    10681 agcaaagcct acatctgcac gcaaacgctt tacctcagca gctaaatttg caggatgtaa
    10741 agctccacaa ttttcattga tattaagtcc attgggttta tcgctcatta ctataacttc
    10801 agcacctaat tccttaaaaa cagtaggtgc taccttataa gctgctccat gagccacatc
    10861 taaaaccaca cgcaaagact ttaaagtaag atcttttgga aaagaatttt taatagaaac
    10921 aatatacctt cctataacat catcaattct ttttgcttga ccaattttct ccatatctac
    10981 cttagaggct tgtataagct tatcatcaaa ataaatttct tctatttttt tctctatatc
    11041 ttcactgagt ttatttccat gagcatcaaa aaatttaata ccattatcat aataaggatt
    11101 gtgagaagct gaaatcataa tccctgcatc acaacgcata tcttcagtta agaatgcaat
    11161 cgcaggagtt ggcataggac caatttgtat aacattatac cctatagaag taagccctga
    11221 aacaatagca ttttctatca tatagccgct tcttcttgta tcttttccta ctaagatatt
    11281 attagtaata cttttatctt taaaataaat acccgcagcc attgctaaac gcatagccaa
    11341 aaaactatct aaaaattcac ccgcttttcc acgaactcca tcagttccaa aaagtttcat
    11401 tgcaaacctt tctagcaaaa tttaaagaca attataacaa agctaagata aagaaattta
    11461 aacaagctct aaaattagag cttgtttgga accttatagt tcaggtttag gagttttttc
    11521 agtagaaata ggaagttgtg gataaacaat tgctggtttt gttcctgtta aagattttaa
    11581 gaaagtttca atactttttg cttctttatc agaaatttta atgccaagtt gcacactacc
    11641 catttcctta atagcatctt ttaaattcca aatcgcacca ttatgaaaat atggagcagt
    11701 ttcagcaaca tttcttaaag ttggagtttt taccatgcca tttgcatcac ctttaaaatc
    11761 acctaaattt gcaaatttat atttaccagc aacttcaaac gcttgcatat tgccacctaa
    11821 attcacacca ttatgacaag ctacacaacc tttatctata aaaagcttta agcctttttg
    11881 ttcttctttt gttaaagctt tttcatcgcc ttctaaaaat ttatcaaaac gagatggagt
    11941 gatcaaagtt ctttcaaaat ttgcaattgc atcagcaata ttgtcaaaat ttacaccgct
    12001 tttaccatag atttttttaa actcactcac atattcaggc aaagatgaaa ttttttctac
    12061 tgcaagttta gcaggagttg ccatttcagg atcagcttgg attggacctt tagcttgatc
    12121 ggctaatgtt cctgcacgac catcccaaaa ttgagtatta tttaaaactg cattataaac
    12181 tgttggtgaa tttaaatgat gaggatttgc tgtccattta tgacctattg cagtactgat
    12241 tccatctgtt ccaccaagtc ctacattatg acaggtatta caagaaatga taccactttt
    12301 tgaaagacgt ggttcaaaat agagcttttt gccaagctct gctttttcaa gagtaaattc
    12361 actagccttt actccatttt gttttaaaat ttcatcaacg cctttttgat cttttggtaa
    12421 ggcaacaaga cctgaatttt tagcttcatc tataagactt gcagcattta agcttgaaaa
    12481 agcaactaag gatgcgatta gcaatgattt tactttcatt tataaactcc tattaaagat
//
LOCUS       DAEDTT010000049        12535 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.049, whole genome shotgun sequence.
ACCESSION   DAEDTT010000049 DAEDTT010000000
VERSION     DAEDTT010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12535
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.049"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            62..664
                     /locus_tag="KLC54_000983"
     CDS             62..664
                     /locus_tag="KLC54_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HBD9177364.1"
                     /translation="MKRNEHNIALIKNPNFNALIDTGFLDTIDTLKEKLHTHKTDFKD
                     ITHIILTHAHPDHIGALMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTLLKLKNIE
                     FINHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIPKPKIAIK
                     FDIDQNEAIQTREKLLKEFKERKLKVIGTHVPFIEPKFLD"
     gene            752..970
                     /gene="infA"
                     /locus_tag="KLC54_000984"
     CDS             752..970
                     /gene="infA"
                     /locus_tag="KLC54_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HBD9177365.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            1142..1255
                     /gene="rpmJ"
                     /locus_tag="KLC54_000985"
     CDS             1142..1255
                     /gene="rpmJ"
                     /locus_tag="KLC54_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HBD9177366.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            1258..1623
                     /gene="rpsM"
                     /locus_tag="KLC54_000986"
     CDS             1258..1623
                     /gene="rpsM"
                     /locus_tag="KLC54_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HBD9177367.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            1633..2025
                     /gene="rpsK"
                     /locus_tag="KLC54_000987"
     CDS             1633..2025
                     /gene="rpsK"
                     /locus_tag="KLC54_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HBD9177368.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            2053..2679
                     /gene="rpsD"
                     /locus_tag="KLC54_000988"
     CDS             2053..2679
                     /gene="rpsD"
                     /locus_tag="KLC54_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HBD9177369.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            2692..3705
                     /locus_tag="KLC54_000989"
     CDS             2692..3705
                     /locus_tag="KLC54_000989"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HBD9177370.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDAYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            3709..4062
                     /gene="rplQ"
                     /locus_tag="KLC54_000990"
     CDS             3709..4062
                     /gene="rplQ"
                     /locus_tag="KLC54_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HBD9177371.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            4236..5135
                     /gene="hisG"
                     /locus_tag="KLC54_000991"
     CDS             4236..5135
                     /gene="hisG"
                     /locus_tag="KLC54_000991"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HBD9177372.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCMLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            5143..6429
                     /gene="hisD"
                     /locus_tag="KLC54_000992"
     CDS             5143..6429
                     /gene="hisD"
                     /locus_tag="KLC54_000992"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HBD9177373.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIVKEVQEKG
                     DEALIEQALKFDKAEISNIKITQEEITQVSNRLDKDLQDAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALAYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDTNGATIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            6426..7484
                     /gene="hisB"
                     /locus_tag="KLC54_000993"
     CDS             6426..7484
                     /gene="hisB"
                     /locus_tag="KLC54_000993"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HBD9177374.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     NFGFKFIMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVRGLRYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            7481..8068
                     /gene="hisH"
                     /locus_tag="KLC54_000994"
     CDS             7481..8068
                     /gene="hisH"
                     /locus_tag="KLC54_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HBD9177375.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIKNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKAKEGFTFPHMGWNQVHSSHALFKGLEGAYFYFVHSYCVGLGEYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            8065..8799
                     /gene="hisA"
                     /locus_tag="KLC54_000995"
     CDS             8065..8799
                     /gene="hisA"
                     /locus_tag="KLC54_000995"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HBD9177376.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLEKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQLALIEKLAKEVNVNLQVGGGIRSKEEVKALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIFPNICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLQNA"
     gene            8781..9548
                     /gene="hisF"
                     /locus_tag="KLC54_000996"
     CDS             8781..9548
                     /gene="hisF"
                     /locus_tag="KLC54_000996"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HBD9177377.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINIPFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKEVQDLGAGEIVLNMMNQDGVKNGYDLEQLKAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            9550..10173
                     /locus_tag="KLC54_000997"
     CDS             9550..10173
                     /locus_tag="KLC54_000997"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HBD9177378.1"
                     /translation="MQNFKELNEKIAWQKVDHLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIVDLSLDCDNDTLLILANPVGSTCHTGD
                     ISCFEKISKNADFVFLARLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(10197..11357)
                     /locus_tag="KLC54_000998"
     CDS             complement(10197..11357)
                     /locus_tag="KLC54_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HBD9177379.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     EGHQNIDLLKIIKDKFKDDEFAFVCLFEDKEPLSVESVYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(11383..12489)
                     /locus_tag="KLC54_000999"
     CDS             complement(11383..12489)
                     /locus_tag="KLC54_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HBD9177380.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNATEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSKRYLTA
                     AEKIWGFIEKINNEGGADNSAIQPVMNGKSACSH"
BASE COUNT         4560 a         1906 c         2257 g         3812 t
ORIGIN      
        1 ttctttttta gtgccgcaaa acgatgaaga taagaatttt atagaaaaaa ctcgcacaaa
       61 aatcaaaaga aatgagcata atattgctct gataaaaaat ccaaatttta atgctttaat
      121 agacacaggg tttttagata ctattgacac attaaaagaa aaattgcata cccacaaaac
      181 cgattttaaa gatatcactc atattatctt aacacatgca catcctgatc atataggagc
      241 tttaatgagc gaagaaaatc tttttccaaa agctcaaatt ttaatcgata aaaaagaata
      301 tgatttttgg atcaaaagcg atagacaaga aattaaaaac accttgctta aacttaaaaa
      361 tatagaattt attaaccact ctaaagattt gatctttcaa aattcaggca ttaaagccat
      421 acctgcttat ggacataccc caggtcaaaa tgctatcata attgatgata aaatagtctt
      481 ttggggagat ttacttcatc tttatgatat acaaatccca aaacctaaaa tcgctataaa
      541 atttgatata gatcaaaatg aggctataca aacaagggaa aaactactta aagaatttaa
      601 agaaagaaaa ctcaaagtta tagggactca tgtgcctttt attgagccta aatttttaga
      661 ttaattactt aaaaattact aaaaattaag taaaaatttt aataattttt gctaaaatta
      721 tagccttttt atttcatgaa aggagaaaat tttggcaaaa gatgatgtaa ttgaaattga
      781 tggcaccgta cttgaagcat tgcctaatgc aaatttcaag gttgaacttg acaacaaaca
      841 tgtaatttta tgtcatattg caggaaaaat gcgtatgcat tatataagaa taatgccagg
      901 tgataaagta aaagtagaac ttacacctta tagccttgat aaagggcgta taacttttag
      961 atataaataa tctaagttat ttaaaagcta attttagata aaattagagt ttttgcgaca
     1021 aattacatcg aactatatga agaagtattt ttaaaatcca ccacttattt tgaaaatagt
     1081 tggttattca taaaacctga tgtagtcgta aatcaagtgg aattcattca aggagacgct
     1141 catgaaagtg agaccatcgg ttaaaaagat gtgcgacaag tgcaaagtag ttcgccgtaa
     1201 aggcgtggtt cgcattattt gcgaaaatcc aaaacataaa caaagacaag gataaacatg
     1261 gctcgtattg caggtgtgga tttaccaaag aaaaaaagaa ttgagtatgg actaacctat
     1321 atttatggta taggactttt cacttcaaga aaaattctag ataaagtagg aatttcttat
     1381 gataaaagag ttcatgagtt aagtgaagat gaagcagcag ctatccgtaa agaaattcaa
     1441 gaaaactata tggttgaagg ggatttgaga aaacaagttg ctatggatat taaagcactt
     1501 atggatttag gaagctttag aggtttaaga cacagaaaag gcttaccagt tcgcggacaa
     1561 aaaacaaaaa caaacgcaag aactagaaaa ggtaagagaa aaactgttgg tgcaaaatca
     1621 taaggataaa tcatggcaaa aagaaaaatc gtaaagaaaa aagtagttaa aaaaaatata
     1681 gcaaaaggta ttgtttatat cagtgcgact tttaacaata ctatggttac agtaactgat
     1741 gaaatgggaa atgctatcgc ttggagtagt gcaggtggtt tgggatttaa aggttctaaa
     1801 aaatcaactc cttatgcagc acaacaagca gtagaagacg ctttaaataa agcaaaagaa
     1861 cacggaatta aagaagtagg cattaaagta caaggaccag gaagcggtag agaaactgct
     1921 gttaagagtg taggtgctat ggaaggaatc aaagtaactt tcttaaaaga tatcactcca
     1981 ttagctcaca atggttgcag accgcctaag cgtcgtcgtg tctaagatat aagaaaaatt
     2041 taggagaata ttatggcaag atatagagga ccagtagaaa aattagaaag acgctttggt
     2101 gttagcttag cattaaaagg agaaagaaga ctagctggca aaagtgcact agataaacgc
     2161 ccttatgcac caggacaaca cggagcaaga aaaggtaaaa ttagtgagta tggacttcaa
     2221 ttaagagaaa agcaaaaagc taaatttatg tatggagtaa gcgaaaagca attccgtcgt
     2281 ttatttgctg aagcagcaag aagagaagga aatacagggg tattacttat ccaactttta
     2341 gaacaaagat tagacaatgt ggtatataga atgggttttg ctacaacacg tcgttttgca
     2401 agacaacttg taacacatgg acatgtttta gtaaatggta aaagagtgga tattcctagc
     2461 tttagagtag aagcaggtgc taaaatcgaa attatcgaaa aaagcaaaaa caatccacaa
     2521 ataacaagag ctatcgaact tacagcacaa actggaatcg ttgcttgggt tgatgttgaa
     2581 aaagataaga gatttggaat tttcacaaga aaacctgaga gagaagaagt tgtcattccg
     2641 gttgaggaaa gatttatcgt tgagctttac tctaagtaat aggggctaaa tatgagaaat
     2701 attacaacat ctgcttatac gccaacagaa tttacaatag aaaacattag tgatactgtg
     2761 gctaaaatca gtgcttggcc ttttgagatc ggctatggaa tcaccctagc ccatccttta
     2821 cgccgtttgc tttacactag caccatagga tatgctccaa ctgcgatcca tattgatggc
     2881 gtagctcatg aatttgatag catgcgtggt atgcttgaag atgtagcact ttttatcatt
     2941 aatctaaaaa aactacgctt taaaattaaa ggcgaatcaa ataaagaaat agtagaattt
     3001 agctttaaag gctcaaaaga aatttacggc aaagatctaa ataatgatca agtagaagta
     3061 gtaaataaag acgcctatct agcaactatc aacgaagatg ctgaactcaa attcacatta
     3121 atcgttgaaa aaggtattgg ctatgtacca agcgaagaaa ttaaagagct tataaatgat
     3181 cctaaattta tagctttaga tgctttcttt acacctgtaa gagaagcaac ctatgatatt
     3241 gaaaaagttt tatttgaaga taatcctgat tatgaaaaag tggttttaac cgtaacaacc
     3301 gacggacaaa tcactccaaa tgaagctttt caaaatgctc tagaagctat gtataaacaa
     3361 ttatcagtat ttgataaaat taccaatgtt agaagcgtaa ttaaaaatca agcaacaagc
     3421 aatgaactag aaaatactaa attattacaa aacattacag atttaaattt aagtgctaga
     3481 agttataatt gtcttgaaaa agcaggagta gtttacatag gtgagcttgc tttgatgagt
     3541 gtaagtgaac ttgcagggct taagaattta ggtaaaaaat ctcttgatga aattaaaaac
     3601 atcatggaaa gcataggttt tcctgtggga acttctaagc ttagcgataa taaagaaata
     3661 cttaaaaata aaatcgcaga attaaaagca caaaacgaag gataaagaat gagacataaa
     3721 catggatata gaaaacttgg cagaacttca tctcatcgtg ctgccttatt aaaaaattta
     3781 actatagctt tagtaaatag cggaaaaatc gaaactactc taccaaaagc taaagaatta
     3841 agaggttatg tagaaagatt gattactaga gcaagacttg gagattttaa cgctcataga
     3901 gcagtttttg cttcattaca agataaaaat gctactaata agctagtaac tgaaattgct
     3961 ccaaaattca aagatcgcaa tggtggatat acaagaatca tcaaaacaag aattcgccgt
     4021 ggtgatgctg ctgaaatggc tttcatcgaa tttgtagctt aatcaaatcc tagcttttgc
     4081 taggattaat acttcaatta aataccctaa aaaataaaaa gttttaaata attattttaa
     4141 ataaaattaa atttatttat ttttcaaaac ccttgctaaa aattcaacta cttatgctaa
     4201 tataagtttt taatttttaa tttcaaggat atgttatgca agaaaacact cgtttacgca
     4261 ttgcgataca aaaatcaggt agactttcaa aagaatccat agagcttctt tcagaatgtg
     4321 gtgttaaaat gcatatccat gaacaaagtt tgatcgcttt ttctacaaat ttacccatag
     4381 atattttacg cgttagagat gatgatatcc ctgggcttat ttttgatggt gttgtagatt
     4441 taggtattat aggggaaaat gttttagaag aaaatgaact tgaacgccag tctttaggag
     4501 aaaatccaag ttataagctt ttaaaaaagc tagattttgg atattgccgt ctttctcttg
     4561 ccttacctca agaaaataaa tttcaaaatt tgaaagattt tgaaggctta aggatagcta
     4621 cttcttatcc acaactttta aagcgtttta tgaaagaaaa tgggattaat tataaaaatt
     4681 gtatgcttac aggttctgtt gaagtagccc ctagggcaaa tttagccgat gcaatttgcg
     4741 atcttgtttc aagtggagca actttacaag caaataatct taaagaagtt aaagtcattt
     4801 atgaatctcg tgcttgtttg attcaaaaag aaaatgcttt aagtaaagaa aaacaagcct
     4861 tagtggataa aattatgttg cgtgtagcag gagtaatgca agcaagagaa tctaaataca
     4921 ttatgcttca tgctccaaaa gaaaagcttg ataaaattca agctctgctt ccaggagttg
     4981 aaagaccgac tatcttacct ttagcacacg atgaaaaaaa tgtagcttta catatggtaa
     5041 gtaaagaaaa tcttttttgg gaaactatgg aggctttaaa agaagaaggt gcgagttcga
     5101 ttttagttct gcctatagaa aaaatgttaa agtgagtaaa aaatgcaaat tttagtatat
     5161 gataatttag atgaaaaaca aaaagaagag gcgttaaaac gccctgctat aagcgcgaag
     5221 gatgaaattt caaaaatagt aagctccatc gttaaagaag tgcaagaaaa aggcgatgaa
     5281 gctttgatag aacaagcttt aaaatttgat aaggctgaaa tttctaatat taaaatcact
     5341 caagaagaaa ttactcaagt aagcaatcgt ttggataaag atttgcaaga tgctatttta
     5401 gtagcttatg aaaatatcaa aaaattccac gaagcccaaa tcccacatga aatcgctctt
     5461 gaaactacaa aaggcgttaa atgtgaggtt ttaacacgcc ctatagaaaa agtaggactt
     5521 tacataccag ggggtttagc acctttgttt tcaacggttt taatgttagc tatccctgca
     5581 aaaattgcag gttgtgaaaa aatcgtttta gcaagtcctg caaaaatcaa tgatgccgtg
     5641 cttttttgtg ctaaactttg cggcgtggat gaaatttatc aaatgggtgg tgcaggagct
     5701 atagcagctt tggcttatgg tacacaaagt gttttaaagg tggataaaat ttttggccca
     5761 ggaaatgcct ttgtaaccga agcaaaacgt caagtaagta gcgatacaaa cggagcgact
     5821 attgatatgc aagcaggacc tagtgaagtt ttagtaatag ctgatgattt ggctaatgaa
     5881 aaatttgtag ctagtgattt gctttcacaa gctgaacatg gtgcagattc tcaagtgatt
     5941 ttggtgtgtt taagtcaaga ttttgctaaa aaagcaagtg atgaagtcca aagtcaatta
     6001 gaacttttac ctcgcaaaga acttgcaagc aaaagtattg cgaattcacg cattatcata
     6061 gctaaagatt taaatcaagc cttagaaatt tcaaatctct atgcccctga acatttaatc
     6121 atacaaactc aaaatccacg agaactttta aaaggtgtaa aacacgcagg atcagtattt
     6181 ttaggagctt attctccaga gtctatgggt gattatgcaa gtgggactaa tcatgtttta
     6241 cctacttatg gacttactaa aacgcattct agtttaggtt tggcagattt tagtaaaaga
     6301 atgaccgttc aagagctaag caaagaaggc tttttagctt taggtaaaag tgttgaaatt
     6361 ttggcacaaa atgagcattt agacgcacac aaaaacgctg taacttttcg tttagagagc
     6421 ttaaaatgag tcaaaaaatc ctttttatag atagagatgg cactttaata gaggaaccaa
     6481 aaagcgattt tcaaatcgat actcttgaaa aattgcgttt tgaaaaagat gctattccta
     6541 ctcttttaaa actaaaaaat tttggattta aatttatcat ggtaagcaat caagatggtc
     6601 ttggaacgcc gagttttcca aaggaaaatt ttgaaattgc tcatgaaaaa atgcttgata
     6661 ttttaaaaag ttgcggtata gaatttcaag atatttttat ttgtccgcat tttgaaaatg
     6721 aaaattgtgc ttgtagaaaa cctaaaaccg ctatgttaga agagtatatc aaacacgaac
     6781 tttatgacaa ggagcaaagt tttgttatag gagatcgtga gagcgatatg atcttagctt
     6841 caaatttagg tgtgcgtggt ttaagatacg gcgaactttc ttggaaagaa atagaaaatg
     6901 aaattttaag ttcttttaga agtgcgagtt atcaaagaac taccaaagaa acagatataa
     6961 aagtaaaagt gtgcttaaat gggggcaagg ttagcattaa aacaggtatt gatttttttg
     7021 atcacatgtt agagcaaatc gctgtacatg gaggtatagg gcttgaaatt tcttgcaaag
     7081 gggatttaga aatcgatgag catcatagcg ttgaagatgt agccttagca cttggagctt
     7141 gcatcaaaaa agccttaggg gataaaatcg gcattgcaag atatggtttt gctttaccta
     7201 tggatgagtg tttggcaagt tgtgcgatgg atttttgcaa tcgccctcat ttagtctata
     7261 aagccaaatt taaaaaatct catttaggag ctttaagcac agaaatgatc gagcactttt
     7321 tttattcttt aagctatgct atgggcgtga gtttgcattt aaaagttaaa ggcaaaaatg
     7381 atcatcataa agctgaaggg cttttcaaag cctttgcaaa agctttgaaa atggcagtaa
     7441 aaatagaaag tgaaaattta gccagctcta aaggagtgat atgaaaatca tcatcatcga
     7501 tacagcctgt gcgaatttgg catctttgaa attttgtctg gatagattag gttttaatgc
     7561 aactatcagt agggatttaa aagagcttga aagtgcggat aagctttttt tacctggagt
     7621 gggtaccgca aaagaagcga tgaaaaattt agaacaattt aatcttattg attttattaa
     7681 aaataccaaa aaacctttac ttggtatttg tttaggtatg caaattttag gaaatttttc
     7741 tgaagaatta aatcaagaaa ccttaaaact tatagatttt acaacccaaa aatttaaagc
     7801 taaagaaggc tttacttttc cacatatggg atggaatcaa gttcatagct ctcatgcttt
     7861 gtttaaaggc ttagaagggg cttattttta ttttgtgcat agttattgtg taggacttgg
     7921 agaatatact atagcagatt gtgagtattc gcaaaaattt agcgcaagcg taatgaaaga
     7981 taatttttac ggggtgcaat ttcaccctga aagaagcagt gaagcggggg aaattttaat
     8041 ttcaaatttt attaaggata taggatgact caaatcatac ccgcactcga tcttatagat
     8101 ggcgaagtgg tgcgtcttgt aaaaggggat tatgaacaaa aaaaagtata taaatacaat
     8161 cccttggaaa aattcaaaga atacgaaaaa gcaggagcga aagaacttca tcttgtagat
     8221 cttacaggtg caaaagatcc tagcaaaaga caacttgctt tgatagaaaa attagccaaa
     8281 gaagtcaatg tcaatttgca agtaggcgga ggcatacgct ctaaagaaga agttaaagct
     8341 ttgcttgatt gtggagtaaa aagagtagtt ataggatcta tggcgattaa agatgcgact
     8401 ttatgtcttg aaattttaaa agaatttggt agcgaagcta tagttttagc cttagatacg
     8461 attttaaaag aagattatgt tgtggctgta aatgcttggc aagaagcaag cgataaaaag
     8521 cttatggaag ttttagattt ttatagcaat aaaggcttaa aacacatact ttgcacagat
     8581 atttcaaaag atggcaccat gcaaggagta aatgtaagac tttacaaact tatccatgaa
     8641 atttttccta atatttgcat tcaggcaagt ggtggagtag cgagcttaaa agaccttgaa
     8701 aacttaaaag gaatttgtag tggggttatc gtaggaaaag ctttattaga cggagttttt
     8761 agcgtagaag aaggaataag atgcttacaa aacgcataat tgcatgttta gatgtcaaag
     8821 atggcagagt agtaaaagga acacaattta aaaaccataa agatatggga gatatcatag
     8881 agcttgctag gtattattct caaaatggta ttgatgagct tgttttttat gatattgctg
     8941 caagtgctag aaaagaacgc atatcaagag aatgggtaag tgaagtagca aaaaatatca
     9001 atattccttt ttgtgttgca gggggtatta aaagcgaaga agatgcagct gaacttttgg
     9061 ctaatggggc agataaaatt tctatcaatt ctcctgcttt aaatgatcca agcctaatca
     9121 cacgccttgc taaaagcttt ggcgtgcaat gcgtagtagt agggattgat agcttcaaag
     9181 atgaaaatgg aaatttaaaa gtatttcaat acacaggcga tgaaaaaaca agcaagcata
     9241 gtggaaaaag cactttagaa tgggttaaag aagtgcaaga tctaggtgca ggcgaaattg
     9301 ttttaaatat gatgaatcaa gatggtgtta aaaatggcta tgatttagaa caattaaaag
     9361 ctgtatataa aatttgtaaa gtacctttga tcgcaagtgg gggagcggga aaaatggagc
     9421 attttttaga agcttttaaa ctaggtatag atggggcttt agctgcttct gtttttcatc
     9481 aaaaacttat agacattaaa gaattaaaaa tttatcttaa aaatcaaggt ttaagtataa
     9541 ggatataata tgcaaaattt caaagaactt aatgaaaaaa ttgcttggca aaaagtggat
     9601 catcttttac ctgtcatcat ccaagatgca aaaacttgtg aagttttaat gctaggcttc
     9661 atgaataatg aagccttaga aaaaagctta gaaagtggca aagtagtctt tttttcacgc
     9721 acaaaacagc gtctttggat gaagggtgaa gaaagtggaa atttcttaaa tatcgtagat
     9781 ttaagcttag attgtgataa tgacacgctt ttaattttag caaatcctgt aggatctact
     9841 tgtcatacgg gcgatatttc ttgttttgaa aaaatttcta aaaatgcgga ttttgttttt
     9901 ctagccagac ttgaaaagct tattaatgca cgcaaaaatg ccgatgaaaa tacttcttat
     9961 acagcaaaac ttttcaaaag tggcacaaaa cgcatcgcac aaaaagttgg tgaagaaggc
    10021 gtagaaacag ctttagcagc gacagtaaaa gataaagaag agcttatttg tgaagcagcg
    10081 gatttaatgt atcatttaag tgttttactt gcagatgcaa atcttagttt ctcagatgtg
    10141 atttcaaagt tgaaagaaag acataaagct taaagcttta tgtaaataaa tttatatcaa
    10201 tgcaaggctt cgttaagttt gactgctttt ttatttaaag ctactatcat agcaccgctt
    10261 atagaatctt gacggaaatg tagcccattt aaacctttaa gctctaagcc tttgtaaatt
    10321 tctttatcaa aattaaaata aggattaagt ttagcaagct cctcagcatc tttgagtaaa
    10381 aatttcgttc cttctagcac tgcaatacct gcatcaacta tacaattatc ccctaaagga
    10441 attcctgtca ctgaattagc ccctaaaaga caagccttac ctacgcttat agcattgcca
    10501 cttgttccac ttaaaacacc taaaatcgaa gctccgccac ctacatcaga accttctcct
    10561 actatagcac tcgaactaat acgcccttca accatacaag ctcctgttgt acctgcatta
    10621 aaattcacat aacttgcccc tggcatgatg gttgttcctg ctgctaaaga tgcacccatt
    10681 cttactttgg aactttctaa aattcttgta ttatcctcag ggataatatg cgctaaaaat
    10741 cttggaaatt tatcaacaaa atcgattttt ggatattgat tgctcatttt taaacgcatt
    10801 tcatttgctc ttaaatactc aagctcgata ggtttatcat cgctccaagc tacattgctt
    10861 aaaagtccaa aagctccatt tagattgata cttcttaaag gtactttttt agtagaaagc
    10921 aaataaagtt ttagataaac actttctaca cttaaaggtt ctttatcttc aaaaagacaa
    10981 acaaaagcaa actcatcgtc tttaaattta tctttgataa tctttaataa atcaatattt
    11041 tgatgccctt cttcttctaa aaaaggttta aaacaagaaa gcgcaaaatc aatatcttct
    11101 aattttaaag tttgcacaaa ctcactcgca ttaaaatcaa tctccacacc cctttgcata
    11161 aaagcttcaa gcatgattgc cgctgagcca aaattttgct cataattaat caaagcaaaa
    11221 cttgcttgta agattttatt tttatttaac tgtcctctat caagccttgc tataccaaaa
    11281 gctttaggtt ttttatagcc acttttttgc tcaatttgtt tgattaaaag taaaaaatct
    11341 tctttggtat taatcatttt cttttcctta tccacttaat ttttaatgcg aacacgcact
    11401 ttttccattc atcacaggtt gtatagcaga attatccgca ccgccttcat tgttaatctt
    11461 ttctataaag ccccaaattt tttcagctgc tgttaaataa cgctttgaac tcacactttc
    11521 agggtgataa aaactcacag gcttgccttc atctccacct tctcttacta tcatttctat
    11581 aggaatttgt gctaaaactt cacttttata ggcttttgcc atatcctcag ccgttccttt
    11641 gccaaaaata tcatactctt taccattatc aggacataaa aatccactca tattttcaat
    11701 cacacccgct ataggaatgt gaagtttatt aaacatatct aaagctcttt tactatcgtc
    11761 taaagatacg gtttgaggtg tacttacaca aactcctgca gtaataggaa tactttgtgc
    11821 agaagtaatt tgcgcatcgc ctgttcctgg aggcatatcc aaaaacaata catcaagttc
    11881 aggccaaatc acatcagcta aaagctgctc gattgctttc ataatcatag ctccacgcca
    11941 cataagacct tgaccctctt cgatcaaaac ccccatactc atcatataaa caccatgagt
    12001 taaaataggc tttaatctct gccctactac ttcaggctga gttttggttt cgcctagcat
    12061 tcttggaata tttggcccat aaatatctgc atctaaaatc cctactcttt ttcccatttt
    12121 agccatggaa attgctaaat ttactgtagt tgtagatttg cccacaccac cttttccact
    12181 tgaaaccatg ataaaatttt ttacttgtgg agcgatattt tttccacttc ttgaattgct
    12241 tttttcttca ggaatttttg gagtaatgat attaagttca atatttttta aagccaaact
    12301 cgataaagct tcagtggcat ttttacgaat ttcattagct acttcaggat ttgctgaaac
    12361 gatttctata tcaataaata caccatcatc ttgaatttta atatctttta caaagttaaa
    12421 actcactata tccttttcaa aaccaggata ttttacagtt tttagcttct ctaaaatttg
    12481 ttctttcatg ttttttcctt gtcttttaaa aaaatcaatt ttactaataa aatga
//
LOCUS       DAEDTT010000050        12371 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.050, whole genome shotgun sequence.
ACCESSION   DAEDTT010000050 DAEDTT010000000
VERSION     DAEDTT010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12371
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.050"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..1429)
                     /gene="recJ"
                     /locus_tag="KLC54_001000"
     CDS             complement(<1..1429)
                     /gene="recJ"
                     /locus_tag="KLC54_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HBD9177381.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIVRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAAIEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMSKFLELLAIAIIADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLILTK"
     gene            complement(1416..3047)
                     /locus_tag="KLC54_001001"
     CDS             complement(1416..3047)
                     /locus_tag="KLC54_001001"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HBD9177382.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDANSSEFDEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEAKSVKERHRHRYEANPKYRADFEKHGLIVSGESKGLIEVVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVIRGFIKAAINYEDN"
     gene            3167..3790
                     /locus_tag="KLC54_001002"
     CDS             3167..3790
                     /locus_tag="KLC54_001002"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HBD9177383.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            3910..5295
                     /locus_tag="KLC54_001003"
     CDS             3910..5295
                     /locus_tag="KLC54_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HBD9177384.1"
                     /translation="MDKHFFQDFLMLSQAHTITTLAMLCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFALQYLANFPDAKEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIHEG
                     NKQIREIQTFSNIILGLIPSNIIAAINKENIIAIVIFSFFIGISAKKISKKEEYEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MLIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNL
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(5334..7703)
                     /locus_tag="KLC54_001004"
     CDS             complement(5334..7703)
                     /locus_tag="KLC54_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HBD9177385.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     QKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(7719..9047)
                     /locus_tag="KLC54_001005"
     CDS             complement(7719..9047)
                     /locus_tag="KLC54_001005"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HBD9177386.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLIDDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEAIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ISHAKELLEHAKEVISYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDAIFKRTFK"
     gene            9125..10027
                     /locus_tag="KLC54_001006"
     CDS             9125..10027
                     /locus_tag="KLC54_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HBD9177387.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNKILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRIDKETSGLILIAKNKKAQIDLKSLFEKKLVQKEYLALAHGKIE
                     ENFIVDKAINLTKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKQQIESILDEKLNPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFDINSKINIKEIFNNSIK"
     gene            10139..11017
                     /locus_tag="KLC54_001007"
     CDS             10139..11017
                     /locus_tag="KLC54_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HBD9177388.1"
                     /translation="MKFVNFIQGQKNNLGVLNSSGKIVSFTDLGIETNDMNEFIIYFD
                     KFKHKLTDLDSKIAYEIPKENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATAPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNDELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            11081..11995
                     /locus_tag="KLC54_001008"
     CDS             11081..11995
                     /locus_tag="KLC54_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HBD9177389.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAKLGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLAEQATVPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAIAE
                     FEKTLITPNSPFDRYLSGDQNAISAQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            11985..>12371
                     /locus_tag="KLC54_001009"
     CDS             11985..>12371
                     /locus_tag="KLC54_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HBD9177390.1"
                     /translation="MTNKKSSFLIKFIILSTLVLAFILVLLGIIFNNYSSSKDNKELI
                     NIVQQLEISDEKINSVFQNSFNFINYDPSVQAIKKMQENFTKLKTFGIDINKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELA"
BASE COUNT         4199 a         2244 c         1697 g         4231 t
ORIGIN      
        1 ccttggttaa aataagcttt aagtgttttt catctttacc tagaagtttt ttatttttta
       61 cacaaagatt ttctaaaaca aaaaaaggtc gtggattttt atgtccaaaa ggttcaaaag
      121 attctaaaat ttcaagcatt tcaaaatcaa tttcactagg ttctaagatt cctaaaattt
      181 catctgtatc caaaaattca ctttcagaaa tttgcgaaca ttcttttttg attttatttt
      241 taaattgttc aaaattttca gagtttaaac tgattccagc agcaccttta tgaccaccat
      301 aattgcttaa tatagaattt gtcttagaaa ttaaagctaa aatatcaatc ttgccaacac
      361 ttcttgcgct accttttaag tgttcttcat tttgagaaaa tacaaaagca ggtttattaa
      421 aatgtttagc taaacgactt gccacaatcc ctaaaacccc ttcatgccaa tttaaacccg
      481 ataccacaat acaagaatcg ttttcatcga tttgatttaa actatcttca aaaagctgtt
      541 tttcttcatc tttacgactt tcattaaaac taacaatttg ctctagatat tctaaagctt
      601 tattaaaatc tttagtgtgt aaaaattcat aagaaatact tgcatcatcc attcttccag
      661 cactatttat aagcggagca attaaaaatc ctatattatc aagagcaaat ttatcctttt
      721 gataataatg cttaatagcc cgaaaagcag ctcttttaga tttgttaata tgatctatac
      781 cacgccttac taaagcacga tttaaatctc taagctccat catatctgca ataattgcaa
      841 tcgccaaaag ttctaaaaat ttactcatat cgtatttaag cttgcaaact tcttttaaag
      901 ctgctatcaa ataccatgcc acttgagctc cacaaatttc aatttctgga aaatcacaat
      961 ctttttgctt tggattgata atggcaaaag catcaggcaa aacatcttga ggcatatgat
     1021 gatcagtgat aatcaaatct atattttttt ctttgcagag tttggctgct tcaatagcag
     1081 ctattccatt atctactgtt attattaaat tcacatcaag ttcgttgata atctcagcat
     1141 ttaatccata tccatcttta aaacgatttg gaattcttac tatataatca aaacctatat
     1201 catcgaaaaa ttctgccata ataacacaag aaatgattcc atcaacatca taatccccta
     1261 ctatggcgac tttctcattt ttttctacag cttctttgat gcgattagct gctttatatg
     1321 catcctttaa acagcatggc aaaggcagat cacaaagttt ggtatgcaaa tctttttcaa
     1381 agcgtgaagc caaaattttt ttaatttcat ttttattaat tatcttcata gtttatagct
     1441 gccttgataa aaccgcgaat cacaggatta acatgctcaa gtcttgatgt aaattctgga
     1501 tgaaactgca cagccaagaa aaaaggatga cagttaagct caactacttc gatcaatcct
     1561 ttgctttcgc cacttacaat caaaccgtgt ttttcaaaat ctgctctata ttttggattt
     1621 gcttcataac ggtggcggtg gcgttctttt acactttttg cttcattata aaccttagcc
     1681 aaaagggatt tttccttgat atcacattta taagctccta aacgcatagt tccgcctaaa
     1741 ggagtttttg cagtacgaat ttgtttttct ccatttgtat ccataaattc atcaatcaaa
     1801 taaaccacag gattttggca tttctcatca aattcacttg aatttgcatc tttaagtttt
     1861 aatacatttc tagcaaattc caccaaagca agctgcatac ctaaacaaat tcctaaaaaa
     1921 ggaattttat tttctcttgc gtattgaatg gcttttatct taccttctac accacgatat
     1981 ccaaatcccc cagcaaccaa aattccactc acatctttaa acacttcaga actttccata
     2041 ttttcaagtt tttcactatc tacccatttt aactccactt tagtatctag ggctgcacct
     2101 gcgtgtataa tagcttcagt aaggctttta taactttctt ttaaatccac atatttgcct
     2161 acaaaagcga ttttaacttc attgcttgga gctataactc tttttaccaa agagtcccaa
     2221 ttttccatat taggttttaa atttttcaaa tccaaaattt cagcaatagg gcttaaaata
     2281 tcttgcttta aaaaattaag tggaatttga taaatactag ccgcatcaac actttctatc
     2341 acgcaatttt tttccacccc gcaagaaata gcaattttat cttttaaatc tctatcaaga
     2401 gctttttcac tacgacaaat aatcatatca ggactaatgc ctatgcgtct taactcgcct
     2461 acactatgtt gagttggctt tgtttttaat tcccctgcag ccttaataaa aggtactaga
     2521 gtaagatgaa tattcatagc attattttta cccacttcca aacgcaaagc acgaatagct
     2581 tctaaaaaag gcaagccttc tatatcccca acagttccgc ctatttcaac gataagtata
     2641 tctttgcctt ctcctgcttt tttaatgcga tctttgattt ctcctactat atgagggata
     2701 acttgaatgg ttttgccaag atattctcca cgcctttctt tttcaatcac actttgataa
     2761 acccgtcctg tagtgaagtt attatcttga gataaactct catccaaaaa acgctcataa
     2821 tgccccaaat caagatccgt ttctgctcca tcatcagtta caaaaacctc tccatgctca
     2881 aaaggactca tagtgcctgg atcaacattg atataaggat cagcttttaa aatactcact
     2941 ttaagccctg aattttttaa aagtgttgcg atagaagcag cggctatccc tttacccaaa
     3001 gaacttaaaa ctccacctgt tacaaaaata tattttgttt gtttcattga taataagcct
     3061 tattttttta tctaattata gcttgataaa actttttatt tcattagaat tttaagtaaa
     3121 aaatgcaaga attacaaaaa atatttttat caaaaaagga ataagtatgc aaatcacttt
     3181 actttttcac actccattat ctgtttgttc tcatgcaaca agaacttgtt ggcaaagctt
     3241 tgaaaaaggc gattgcggtg gcgaaaaaga taaagaactt atcgatcgcg tgggcaacaa
     3301 attcaaacac gcttcaacct tagaacatct aaactatact ttttatatac aaggaatttc
     3361 aagagcttgc ttacaagaag ttgcaagaca ccgtcacact agtcctagtg taaaaagcac
     3421 gcgttatacc ttaaaagaac ttcgcaatga agctgaattt aaaataggag attttgaaaa
     3481 tgcaagccgt tatcttgtgc tttgtggtaa tgaagaggtt gataacgcaa gcattaaagc
     3541 cttagaaaat ttacgcacta ttttacaaaa aagcattagt ctagatatag ccaaatactg
     3601 cttaccagaa agctataaaa ctgaacttac actaacgatt aatgcaagaa gtttgcagaa
     3661 tttcatttct ttgcgtagtt caaaatcagc tctttgggag attagaaatt tagcaaatgc
     3721 tttatttgaa gccttgccac aagaacacaa atttatattt gaacattgct tacataaaga
     3781 tatagaataa atcatactaa ttttatctta tttaaaatat tgttatgcta ccatttataa
     3841 aatcaagctt tatgcaagta tattttcata taccttgtgc ttgattatag tttcttataa
     3901 ggacttttta tggataaaca tttttttcaa gattttctaa tgctttcaca agctcatact
     3961 ataactactc ttgctatgct ttgtgttgtt ttttacgcat taaaaaaaat gcgggatata
     4021 aaaatcaatt tttctcttcg catgctattt gcgcttttaa tgggtttggg gtttggtttt
     4081 gctttgcaat atttggcaaa ttttccagat gctaaagaag caagtaatat tctttggtat
     4141 agcgaaacaa aacattggtt tgcatttgta agttctgttt ttgtagcttt tataaaaatg
     4201 ctggttgttc ctcttgtaag catttgcatt ataaaagtaa ttatagaaat tgataaaaat
     4261 atcaaaatat cctccttgct tggaataagt cttttttgga tactctttag cacagccata
     4321 gctgcaacct tgggtatatt tttaggttat agttttgatt taggaagtaa ttttgctata
     4381 catgaaggaa ataaacaaat tcgcgaaatt caaacttttt caaatattat actagggcta
     4441 atacctagca acatcattgc agctattaat aaagaaaata ttatagctat tgtcattttt
     4501 tcttttttta taggaattag tgctaaaaaa atttccaaaa aagaagagta tgaacaagcc
     4561 tttaaaagtt ttcataattt tatcctaacc ttttataata ttatgatgaa catgactgct
     4621 acagtcatta gatttatgcc ttatgctgta gtttgtatga tggctaatgt gcttttaagc
     4681 aatggttttg aagctatcaa aacagctgga ctttttataa tgcttattta tatagctatg
     4741 ttaataatgt tcggggtgca ttttttactt cttgcttcac aagggctaaa ccctataaaa
     4801 tatgcaaaaa aagcatttcc tgtatggtta tttgcattta gctcaagatc ttctttgggc
     4861 actttgccta tgactacttc aactttgcaa aataaatttg gagttaattt agctatagct
     4921 aattttgtag catctatagg tacaacaaca ggacttaatg gttgtgcggg atattttcca
     4981 gctttagcgg cagtttttgt agcttttgct acacatacac atattgattt tacatttgct
     5041 ttaatgatag ttttggtagc tgttattgga tccttgggta tagctggagt acctggaagt
     5101 gcaactatgg cagcttctat tatgctagca gggattggat ttggtaataa ttttgtcatg
     5161 ctaagtttga ttttagctat agatcctatt atagatatgg caagaacagc aagtaatgtc
     5221 tcaggagcta tgacttcggc actttgtact gcaaaaaatc taaaagccct agataaagaa
     5281 atttacaatt cttaatcttt taaaacccaa tgcttttcat tgggttttag tatttattgg
     5341 caaccttcac attctatgct acgatctgca acattgactt tttcactatc agggctttcg
     5401 cttcttagat aataagtaga ttttactcca agctcccaag cgagttgata aatttcattt
     5461 aaatatcccc cacttgcttt atcaagcgat aaaaagatat ttaaactctg cccttgatcg
     5521 atccatttac cacgcacagc agcagccttt acaagaattt tttgatcaag ttcgtaggct
     5581 ggagtatagt attgccaagt atcaaggctt aaatttggca caacaacagg tatcatacca
     5641 cttaaatttt gttcaaacca ctttcttttg taaacaggtt ctatagtctg cgtagtaccc
     5701 accaaaatag aaatagaaga agtaggtgca atggccatca aataaccatt tctcatacca
     5761 tcttttttaa ctttttctct aagtttaacc cagtcgcatt cactttgatc aaataagccc
     5821 tctcttaaag ttaaagcttt agccttagga cttgctacat caataggaaa aatccccttg
     5881 ctccaatttg atccttcaaa atcttcataa gaaccttttt caagagctaa atttgaactc
     5941 gcattaatag cctcaaagct aatttgttcc ataatctcat cgattttatt taaatgctca
     6001 tcgcttcccc aataaatctt agcctcagca agcatttgtg cctcacccat gactccaaga
     6061 cctatggcgc gagattttaa atttgtatct tttacttttc tatgaggata aaaatttaaa
     6121 tctatcacat tatcaagcat acgaatagcc gttggcacaa cacgctctat atcttcttta
     6181 gtatacactt tgctaagatt tatacttgct aaattacaaa cggctgtttt tccatcattt
     6241 ttatattttt ccactatata aactttatta ccatcaatac tatctaaagt tgagattttt
     6301 ttggctggtt tttcatatcc cccatcgatc acaacctttt gctcttcatc aaaatgaagc
     6361 tcatctccat tttcaaaaac tactttaatt tgataataat ttggctcggt attttgaaaa
     6421 atttcagtac ataaatttga acttctaata attcctacat gagcatttgg atttgctcta
     6481 ttagcactat ccttaaaaca taaaaatggc aagcctgttt caaaataatt tagcaaaatt
     6541 ttcttccaaa gctctttagc ttctacgatt tctttggtaa tgctttcatc tttttcatat
     6601 tcttcatagc gtttttcaaa agcctcgcca tataaatcac acaaatccgc tgtatctgca
     6661 ggatcaaaaa gagtccattt atcattagct cttactcttt tcataaaaag atcattgatc
     6721 cataaagcag ggaaaagttc atgagcacgg cgtctttctt cacctgaatt tttacgcaaa
     6781 tcgataaaat cacttatatc catgtgccaa ggttctatat aaacggctat agctcctttt
     6841 ctggttccta gttgatctac tgccacagca atatcgttgg taattttcaa gaaaggtata
     6901 atccctcctg cggcattttt atgcccatct atgcttccac ccatagcacg cactttagac
     6961 caatcccaac ctataccacc accaaattta gaaagcaaag ccatttcttg gtaagaatca
     7021 aaaatacctt caatattatc aggggttgat cctatataac aagaactaag ctgatggcgc
     7081 gttgttcttg cattagataa agtcggagtt gcaagcatga gttcaaattt agaaataaga
     7141 tcgtaaaatt tcttcgccca ttcttgagga ttaaattcat tctgcgctaa aaacatcgca
     7201 atggccataa acatttgttg aggaagttct ataggcatac ctttactatc tttaatcaag
     7261 tatctatcat ataaagtttt aataccaaga taagtaaatt gcatatcgcg ttcaggttta
     7321 atataagcat ttaaatcatc taaatcatat ttttctttaa gaccaagtaa aattcttcct
     7381 tctttttcac ccttttgaaa atactcacgc aaatgattat agcgattcat accattaact
     7441 tttttatata aatcaaataa aaaaagtcta gctgcaacaa aggtccaatt tggacaatca
     7501 atatctatct tatctactgc agttttaatt aaagtttttt gaatctcttc agttgaaatt
     7561 ccatcacgaa attgaatctt tgcatcaagt tcaagttcgc ttaaattcac accttctaaa
     7621 tcttttacag catcagaggt gcattttttg atcttagaaa catccaattc ttctgtacga
     7681 ccatttcttt taataacttt cattgccttc cttgcttttt atttaaatgt tcttttaaaa
     7741 attgcatcaa cattttttgt atagtagtta taatcgaaac attttcttac atcctcttcg
     7801 ctcaaacttt ttcttaaatc ttcatcgctt aaaagcgcta acaaaaacaa actttcattt
     7861 ttttcattga tagcagcctt gccattttgc aaatctgccc aaactttcat agcgtttctt
     7921 tgaactattt tataagcttc ttcacggcta atgcctttaa atggaagttc taaaagcacc
     7981 ctccctgaaa atacaagccc gcctgtaaga tttaaatttt tcatcatatt ttcaggataa
     8041 accaaaagct tatcaatcaa atttgtaaga cgcataagca taaaatcagc cgtgataaaa
     8101 gcatcaggca aaataaatct ttcaacacta gaatgagata tatctctttc atgccaaagt
     8161 gcaacatttt ccaaagctgg agttacaaaa gatctaagca cacgacaaag tcctgtgata
     8221 ttttcactta aaacaggatt tcttttatgt ggcatagctg aacttccttt ttgtcctaca
     8281 ctaaaatact cctcagcctc ataaacttca gttctttgaa aatgtcttat ggctacagcg
     8341 atttgctcac aacttgaagc taaaatcgca atagcagaaa taacctgagc ataacgatct
     8401 ctttggatca cttgatttga aacaggagcg gccttaagac ctaaattttt acaaacttct
     8461 tcttcaaatt ctaaaggagc atgagcaaaa tttcccattg caccgctgat ttttccatag
     8521 cttatcactt cttttgcatg ttctaaaagc tcttttgcat gcgaaatttc atcataccaa
     8581 atagctaaca ccaaaccaaa agtaataggt tctccatgaa ttccatgact tcttcctacc
     8641 attaaggtgt ttttatgctc caaagcacgc tttttgatcg cttctaaaag caaagaaaca
     8701 tcttctaaaa taagttccaa actctctttt atctgtaaag caacagctgt atctatacaa
     8761 tcagaacttg tcattgcata atgcacaaaa cgactctctt ctcccaaact ttcacttaca
     8821 cttgtaagaa aagctataac atcatgtttt gtggtttttt ctatttcgtc tattcttgca
     8881 atatcaaatt ttgcattttt aagaattttt tcgcagtctg tgtcatcaat gagaccgagt
     8941 ttattccaag cttttacagc ggctaattct acttttaacc acgcatcgta ttttgcttgc
     9001 atgtcccatt ttttagccat gatttctctg ctatatcttt caaccatctt tgaaaccttt
     9061 ttagctataa ttttatattt taaaaaacag aaattatatc aaattatcct aagaaagtta
     9121 ttaaatggcc tacataaaaa taaaactctc aaacaatgga aaaaaggcgt ttcaagtcct
     9181 tatggaaaat ttaaaaatta gcataaatga agcacaaaaa ctcatagaca aaaaaagact
     9241 tttttgtgat ggaattttag tagaagaaaa gaataaaatt ttaaatggtt tagtagagct
     9301 tatagtctat gaaaacaatc ccaaaggagt agaaattgtc tttgaaaatg aagactttgc
     9361 catacttgaa aaagaaagtg ggatcttaag ccatccaaat ggtagacatt gcaaatacag
     9421 tcttagtgat gaaatttggc atctttgggg aaaagaagct tgcgtagcac acaggatcga
     9481 taaagaaacg agcggactta tacttatagc caaaaataaa aaagctcaaa ttgatcttaa
     9541 aagcttgttt gaaaaaaaac tagttcaaaa agaatacctt gctctagctc atggaaaaat
     9601 agaagaaaat tttatagttg ataaagctat aaatttaact aaaaactacg atgatgtaaa
     9661 aacaagaatg caaatttgca aagaaggaaa acaagctatc actgaatttg aaattttaga
     9721 atactttcct aaaatcaacg ctactctttt actttgtaaa cccttaacag gcagacaaca
     9781 tcaaataaga gtgcatttac actataaaaa tcataccatt ttaggcgatc cactttatgg
     9841 gcttagcaaa caacaaatcg aaagtatttt agatgaaaaa ttaaatccta aagaacgctt
     9901 aaaacttaca ggtgccttgc gtttgtgttt gcattcttat cgtttgaaat ttcaatataa
     9961 aaatcaaaat tttgatatca actcaaaaat aaacataaaa gaaattttca acaattccat
    10021 aaaataaaat gatgtttcac tacgctacaa tcaatcactt ttttaccaaa ttttaaaaca
    10081 aaaaaataat tcttgctaaa actttaagta taattaaata aaaaagcgag attttccaat
    10141 gaaatttgtt aattttatac agggtcaaaa aaacaatcta ggagtactaa attctagtgg
    10201 aaaaattgta agttttactg atcttggcat tgaaactaac gatatgaatg aatttattat
    10261 ctattttgat aaatttaaac acaagcttac agacttggat tctaaaatag cctatgaaat
    10321 tccaaaagaa aattatctag cccctattat agaacctcgc caagatatta tatgtcttgg
    10381 gattaatttt ttagatcatg ccaaagaatc tgccaaattt aagggtgaaa aatttgaaga
    10441 aagagaatat cctgtatatt ttggaaaacg ctgcaatcaa gctacggcac cttttggcga
    10501 tataccttta catgcagatg taacttctca gcttgattat gaatgtgagc ttgcatttat
    10561 tttaagtaaa gatgcttata aaatcaaagc taaagatgca aaagattata tctttggcta
    10621 tactattatc aatgaaattt cagctcgcga acttcaaaaa cgccacaaac aattctaccg
    10681 agcaaaaagt cttgaaggta gcactataat gggaccttat atcacaagcg tagatgaaat
    10741 ttcttatcct cctaaactcc aacttcaaag ctatgtcaat gatgaactac gccaaaactc
    10801 taacactcaa ttgtttattt ttgatattgc ttatgtctta gaagaactta gcgcaggcat
    10861 gcttttaaaa gctggaagta ttatatctat gggaactcct agtggagtag gtatggggtt
    10921 aaatccacct acttttttaa aatcaggaga taaagtacgt tgcgtcatag aaaatttagg
    10981 agaactttgc aataaaataa aaaatatcaa ttattaaaca atttactaaa attacactat
    11041 aatggcattt taaaaactta aattaaggca gaaatttacc atgaaaaaaa taataatgat
    11101 tttatgttta tcttatgcaa atatagtctt tgcagtagat atgataaccc ctattccaaa
    11161 ttccatctct tatgataaag aaaaagctaa acttggaaaa agtctttata tggataaaag
    11221 tttatccaaa gatggaaaag tttcgtgcaa tacttgccat aggcttgatc aacacggcgt
    11281 tgatggactt gaattttcaa taggagttga taatcaactc gataaaccct ttaacactcc
    11341 tacaaccttt aattctgtat ttaattttgt gcaattttgg aatggtagag ctaaagattt
    11401 agcagaacaa gctacagtac cttttttcaa tcctaaagaa atggggctaa gtcctgaact
    11461 tcttttacaa aaagttaatt caaatgaaaa ttatgtaaaa acttttaaaa aactttatgg
    11521 agaagttacg gtagaaaaca tagctcttgc aatcgccgaa tttgaaaaaa ccttgatcac
    11581 tccaaattct ccttttgatc gctatcttag cggggatcaa aatgctattt cagctcaagc
    11641 taaaaaaggt tacgaagatt ttaaagctaa tggctgcatc tcttgtcatc aaggtcaaaa
    11701 tataggtggg aatatgtttc aaaaaatcgg tatttttgaa gaatacccaa accaagaaga
    11761 tttagggcgc tatgaaatca caaaaagaga agctgataaa atggtattta aagttcctag
    11821 tcttagaaat atagccaaaa ccgcacctta ttttcatgat ggatctatac ctactttaga
    11881 tgcttgtgtt cagtttatgg cttactatca actaggaaaa tttttagatc aagaaacagt
    11941 tgacaatata gttgcattct tagaaagctt aacaggagaa tatcatgaca aataaaaaaa
    12001 gttcattttt gataaaattt attattttat ctacactagt tttagctttc attcttgttt
    12061 tattaggtat tatttttaat aactattctt catctaaaga taataaagaa ttgataaaca
    12121 tagttcaaca actagaaatt tcagatgaaa aaatcaattc tgtttttcaa aatagtttta
    12181 attttatcaa ctacgatcca agtgttcaag caataaaaaa aatgcaagaa aactttacaa
    12241 aacttaaaac ttttgggatt gacataaaca aagcagaaga aatttttaat gccaaattaa
    12301 tccagcttaa ttattttaaa tccgcaaatt ccatagcagt aaattcaaaa ctttatttat
    12361 ttgaactagc t
//
LOCUS       DAEDTT010000051        12324 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.051, whole genome shotgun sequence.
ACCESSION   DAEDTT010000051 DAEDTT010000000
VERSION     DAEDTT010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12324
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.051"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..208
                     /locus_tag="KLC54_001010"
     CDS             <1..208
                     /locus_tag="KLC54_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177391.1"
                     /translation="DLKINCINLNDNEKNIDSNEILTIDEYVKYVIINYQNIFPDTDL
                     SKKLGISRKSLWEKRKKYEISKKK"
     gene            186..1346
                     /locus_tag="KLC54_001011"
     CDS             186..1346
                     /locus_tag="KLC54_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HBD9177392.1"
                     /translation="MKSARKNKNITIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLILDEKVVGHIDFKSRFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIKKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDANGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFMRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            1351..1851
                     /locus_tag="KLC54_001012"
     CDS             1351..1851
                     /locus_tag="KLC54_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HBD9177393.1"
                     /translation="MQKLFLTFFYSGSIKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
     gene            1930..2193
                     /gene="rpsT"
                     /locus_tag="KLC54_001013"
     CDS             1930..2193
                     /gene="rpsT"
                     /locus_tag="KLC54_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HBD9177394.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            2212..3279
                     /gene="prfA"
                     /locus_tag="KLC54_001014"
     CDS             2212..3279
                     /gene="prfA"
                     /locus_tag="KLC54_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HBD9177395.1"
                     /translation="MLASKLDPFLKRFEELNSLLSSSDILNDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGTGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(3293..4048)
                     /locus_tag="KLC54_001015"
     CDS             complement(3293..4048)
                     /locus_tag="KLC54_001015"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HBD9177396.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDTIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNANAEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAAS
                     VILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMFDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVAHVGASGNPHKFPHKH"
     gene            4242..6359
                     /locus_tag="KLC54_001016"
     CDS             4242..6359
                     /locus_tag="KLC54_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HBD9177397.1"
                     /translation="MHPNKKAFKLSLFALLLITNLNAQESNEAINLQKVVVSATGFEQ
                     DADSNLRNVISIEGKDLQNKGYVSLEQALERISGISFVNFGLGRNIDMRGQGDKSNIA
                     VKVMIDGRAINVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGSGTRGGVINIITK
                     KQKSDAFAINLKSSAYDHGGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQEGYNEK
                     GYFINTKTYIDINDNSDLTLGYDYFKSKNTSSGYLTKAQAQSDPTQKGNSDNITQINR
                     PEISLDYHYYFDDIWEFNLEAFWQNQKIDYLKDEISMMGTTAYQNGSGFEDTLTGISL
                     KNKLNYANNSYFIFGYEFTNHDAKRKSLVYYSVPGVINYHRMTTLMDMTKQSHSIFAL
                     NSHNFNEFFTLSGGARYEFSTYDTDRSYRNEMSMNIPRPPSDSTTLFDTNKNTNNFAF
                     EITPNFKYSDTGNLYLKYERGFVSPAPAQFVNRNKTGNGIPPYYSSNLKAEIFDTFEL
                     GIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVELSLSQ
                     NFLDDDLIFRESLTYLDAKISKGVNDGMRIPYVSKIKATAGLEYAWNKNFSNFIDLTY
                     FSRAKDGGTIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKRYYTYQ
                     DSINDQYLVGNGRNYYVEFKYAF"
     gene            6334..7320
                     /locus_tag="KLC54_001017"
     CDS             6334..7320
                     /locus_tag="KLC54_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HBD9177398.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNVFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHTIRLLLKNYDNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            7320..8096
                     /locus_tag="KLC54_001018"
     CDS             7320..8096
                     /locus_tag="KLC54_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9177399.1"
                     /translation="MLKIQDLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGEISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIKEFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKLVKEKNIAVVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            8093..8899
                     /locus_tag="KLC54_001019"
     CDS             8093..8899
                     /locus_tag="KLC54_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HBD9177400.1"
                     /translation="MKKILIIMSLFLITLNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAEFLKQEFTQNLKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTHILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(8896..9753)
                     /locus_tag="KLC54_001020"
     CDS             complement(8896..9753)
                     /locus_tag="KLC54_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HBD9177401.1"
                     /translation="MKFKKIYIELSDICGLKCDFCPSRKGIRGVMSEEKFQNLAHEIS
                     NKAELFTFHLLGDPLLLPNLENYLKIAKSEAMKLEITTSGFYLNSKNQALLLGYENIH
                     QINISLMSFLSQSKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNL
                     KIYEFLAKEFEVKIDTNLSKNRLQRHILLHQNKLFKWPNLKDEPLYKKGKCHALKEQI
                     GILSDGSLVPCCLDAKADINLGNVFENNFDKLFKSPRIKMMKKAFEEDKRIEKLCQTC
                     EFFKARLGD"
     gene            9919..11178
                     /locus_tag="KLC54_001021"
     CDS             9919..11178
                     /locus_tag="KLC54_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD9177402.1"
                     /translation="MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAAL
                     PSKDTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMFLFFSIDDMKDYAWRILFVIGGILALGSLFVRKMMNESATKLHQHE
                     DRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGAL
                     FILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVL
                     LFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIEN
                     GFFIYIAIFTIIMLIATLYLPKKSQLN"
     gene            complement(11164..12183)
                     /gene="mutY"
                     /locus_tag="KLC54_001022"
     CDS             complement(11164..12183)
                     /gene="mutY"
                     /locus_tag="KLC54_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HBD9177403.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLKKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKEVEDLKKLSGIGVYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKGAKELLNVNHAFDHNQALLDVGALVCVSKNAKCGICPLYDF
                     CQGKFHTELYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMSFVGEFKHGYTKYKLNIKVYHQILNNENKNYEFKTLKELESTALSVLSLNAL
                     KLIKL"
BASE COUNT         4329 a         1855 c         1870 g         4270 t
ORIGIN      
        1 tgatttaaaa ataaactgca ttaatttaaa tgataatgaa aaaaatatcg atagcaatga
       61 aattttaacc atagatgagt atgtaaaata tgttattata aattaccaaa atatatttcc
      121 tgatactgat ctttcaaaaa aattaggcat ttcacgtaaa tctttatggg aaaaaaggaa
      181 gaaatatgaa atcagcaaga aaaaataaaa acattaccat agatcaaaat gaatttggca
      241 tcttgtcact tattaaagaa ggtttgctag gtacttgcac tcatttaatg aatgaaaaag
      301 aagtcaatga aatcattaaa tcaggaaaat ttaaaggaga aagttttccc tatcccttaa
      361 gctttgcacc aaaaaatgct gaagaagcac taaatgatat aaaatctggc gatagaatcg
      421 atctcatact agacgaaaaa gtagtaggac atatagattt taaaagccga tttaaaaata
      481 ataaaaattt ttctgatatt ttcagtccta acacttgctc tttggaagat atgggaacaa
      541 cttgtataag tggaaaaata gaaatttaca attctcaaat taaaaaaata aaagaaaatt
      601 ttcaacaaat caaaaacaat cttaatgcac aaaaaattac cgctatagtt tcaagttttg
      661 atcctttgca tcgtgcccat gaaagaatgt ttcgttggac tattgataaa gcagatttag
      721 ttgtaatttt tcttgtagaa tcttttgatg caaatgggtt tgaattcgaa cttaaagaag
      781 cttatttgaa aaaatttatt caaaactatc ttccaccgga tagaattttc atttttccat
      841 taaaaaatat taatattttt cacgctcatt taaatcctgg cttagaaagc attatcgcaa
      901 aaagtctagg ttgtaccaaa ctagtagtag gacaaaatca tacaggactt ggaatgtttt
      961 atgatgataa tcaaccaaaa accatacttg atgatttttc caaggattat ggcatagaag
     1021 tgattgtttt gcctgaattt gtattttgcg atcaatgtcg catgattgtt agcacaagat
     1081 cttgccctca tggttgtcat caccatttgc actataattc tcagtcttta aaagatttac
     1141 taagagcggg tatcattcct ccagcaattt tcatgcgcaa ggaagtatct agcgttattt
     1201 taacttctct ttttccaaat agattaaaaa atatgcaaaa aatttataat gagctttttc
     1261 caactgatgg aattttagaa tacaaaaatg atgaagaatt ttatcaaaaa cttttagaaa
     1321 ttcatcaaat gtcttatatg gtgtaacaaa atgcaaaaat tatttttaac ttttttttat
     1381 tcaggttcta taaaaaaggc aagtgggact tttggtacta tcgctgcttt aatacctgct
     1441 ttttttatac ttaaatatct tgggattaat actttgtttt tactaagtat tttaattttt
     1501 gttgcaagta ttcgtgttat agatgattat gaaaaaaaaa caggaattca cgatgacaaa
     1561 cacatagtta tcgatgaagt tgctggggtt tttcttgctt gtgctattgc agcaagtgtt
     1621 gaaaattcaa tagttaattt tattttggct tttgttttat ttagactctt tgacattaca
     1681 aaaccttcta ttattggcaa aatagataaa aaagtcaaag gcggactagg tgtaatgctt
     1741 gatgatatgc tagcaggatt gtttgctgga cttttaagtg cggtaattta tggattttta
     1801 cttaaattta atttagtttt ttgggatata aatttaaaag atttattttg aaattttgct
     1861 taaattaatt aaattttaaa ttttattctt atataattta gtctttaatt tcaaaaaagg
     1921 aaaatataaa tggcaaacca taaatctgct gaaaaaagag caagacaaac tattaaaaaa
     1981 acagaaagaa atagattcta tagaacaaga cttaaaaata taactaaagc cgtaagagaa
     2041 gctgcagcaa atggagataa aaatgctgct aatgaagctt taaaagtagc taataaaagc
     2101 attcatgcta tggtaagtcg cggtttcatt aaaaaacaaa ctgcttctcg ccgtgtaagc
     2161 cgcttagccc ttttagtaaa taaaatcgca taattttcta tatagttttt aatgttagct
     2221 agcaaactag atcctttttt aaaacgcttt gaagagttaa attctcttct tagcagttct
     2281 gatatactca acgatatcag taaaatgact acactctcta aagaacaaaa aaatttagaa
     2341 cctatcgttt taaaagctaa agagtattta aaaactttag acaatataga agaaaataaa
     2401 gctttgctaa acgatccaga acttggggaa cttgcaaaag aagaactaaa aactttagaa
     2461 gaattaaaac caaaacttga agaagagatt aaaattttac ttcttcctaa agatcccaat
     2521 gatgaaagaa atatttttct tgaaattcgt gcaggtacag gtggcgatga ggcatcttta
     2581 tttgtaggag atcttgtaaa agcttatgca agatatgctg aaaatcgcgg ctataaactt
     2641 gagattgtaa gctctagcga aggaagtgta ggtggattta aagaaatcat catgcttgtt
     2701 aaaggaacag gggcttattc aagacttaaa tatgaaggtg gaacgcaccg tgttcaaaga
     2761 gttcctcaaa cagaatccca aggacgcgtg catacttctg ctatcaccgt ggcagtaatg
     2821 ccagaagttg atgatataga aatcgaaatc aatccaaacg atcttaaagt tgatgtgatg
     2881 cgttcttctg gacatggtgg acaaagtgta aatactactg attcagctgt tcgtatcact
     2941 catatcccta caggtatagt tgtagtcaat caagatggaa aaagccaaca caaaaataaa
     3001 gaaagtgcga tgaaagtcct aaaagcaagg ctttatgaaa tgcaagagag tgaaagacta
     3061 gcaaaagaaa gcgaagcaag aaaatcacaa gtaggaagcg gagatagaag cgaacgcatt
     3121 cgcacttaca attttccaca aaatcgtatc agcgatcata gaataaatct tactttatat
     3181 cgcttagatg ccattatgca agatgggctt tttgatgaaa tcatagaacc tttaatcact
     3241 catcatcaag cccaagcttt acaagaacaa aatttataag attttataca aattaatgct
     3301 tatgtgggaa tttatgtgga tttccactag cacctacatg tgcaacattt ccattttcta
     3361 tatcataagc ttgaccaaaa ccttttacaa agcgtccttt tttaaattca agctttacta
     3421 gatgaaaatc aaacatcttg cgtatagttt taatgcctcc ttctcctccg gtttgttttt
     3481 caaactcatc ataaatttga tcaaatcttt cacctctctc taaaaagctt gcatttactc
     3541 tatagcgcaa tcttttgcga agtataacag aagcagcttt actctcatcc tctaaaaaca
     3601 ttatttctat attgtttgga tttactttga tgttgttaaa atgttcactt acttcactta
     3661 tataaatata atttccccat tgtgtgctta caaaaggtgc atacgagcaa acaacttctg
     3721 catttgcatt taaagttgcc aaagctacag aattaaaact tagcataaat tcatttaatt
     3781 ctttttctac gccactaaaa ttttgctcgc tctttgcact catgcaaagg gatattatag
     3841 tatctttaat cgtgttttca tcggcttttt taggaaattc cactcgtaaa ttttctttat
     3901 cattgtaaac aagatccaag ccattaaaat caacactttt tagaaaaaca tcttgcactt
     3961 gctcaatacc accaaatttt ttacaaagat caactaaatt tgatttatga tgatcattca
     4021 tatgagaaat aatgctttca aaattcattt ttatcctttc ttgattttaa aataaaatat
     4081 taaaaaaaat ggtatcaatt atcaaattaa aaataactta aaatatataa attatctatt
     4141 ttaacaaaaa tttatactaa attaagttaa taaaggataa atttcgttct aaattattat
     4201 gatataaatt atcattattt attttattta aggagtaaaa tttgcaccca aataaaaaag
     4261 cttttaaatt atctttattt gcattattgc taataactaa tttaaatgca caagaatcaa
     4321 atgaagctat caatctacaa aaagttgttg ttagtgcaac aggttttgag caagatgcag
     4381 actcaaattt acgcaatgta atcagcatag aaggcaaaga tctgcaaaat aaaggttatg
     4441 tttccttaga acaagcctta gaaagaattt cgggtattag ctttgtaaat tttggacttg
     4501 gacgcaatat agatatgcgt ggacaaggag ataaatccaa tatagctgta aaagttatga
     4561 tcgatgggcg tgctattaat gttcttgata attcccatgg tgtaaccccg ctagatagta
     4621 ttaatttaga taatgtagaa cgcatagaaa tcatacctgg gggtggatct gtgctttatg
     4681 gaagtggtac tagagggggt gtgattaata tcattacaaa aaaacaaaaa tcagatgctt
     4741 ttgctataaa tttaaaaagc agtgcttatg atcatggtgg actaggtgga aatttaggta
     4801 tcaatggcgc caaacaaata aatgaaaatt tagcttttag ctttgatata caaagtttta
     4861 accttgatgg atatcaagaa ggttataatg aaaaaggtta ttttatcaac acaaaaacct
     4921 atattgatat caatgataat agcgatttaa ctttggggta tgattatttt aaaagcaaaa
     4981 ataccagcag tggctatcta acaaaagcac aagctcaaag cgatccaacc caaaaaggca
     5041 atagtgacaa tatcacacaa atcaatcgcc ctgaaatttc tttggattat cattactatt
     5101 ttgatgatat atgggaattt aacctagaag ctttttggca aaatcaaaag atcgattatc
     5161 taaaagatga aatttctatg atgggaacta cagcttatca aaatggaagc ggttttgaag
     5221 acacacttac agggataagt ttaaaaaaca aactaaatta tgcaaataat tcttatttta
     5281 tttttggtta tgaatttaca aaccatgatg caaaaagaaa gagtttggtg tattatagtg
     5341 ttccaggtgt cataaattat cacaggatga caactttaat ggatatgact aaacaaagtc
     5401 attctatttt tgctcttaat tctcataatt ttaatgaatt ttttacttta tccggtggag
     5461 ctagatatga atttagcact tatgataccg atagatctta tagaaatgaa atgagtatga
     5521 acataccccg acccccatca gactcaacaa ccctttttga taccaataaa aacaccaata
     5581 attttgcttt tgaaatcacc cctaacttta aatactctga cacaggcaat ctttatctta
     5641 aatacgaaag aggttttgtt tctcctgcac ctgctcaatt tgtcaatcgc aacaaaactg
     5701 gtaatggaat accaccctat tattcgtcga acctaaaagc tgagatcttt gatacctttg
     5761 aactaggtat tgatgatttt tggtgggatt tttacggctt taatctaact ttattttaca
     5821 ccctaagcaa agatgaaatt tcttatcttg gaaaccctca ttctactagt ggatcttggt
     5881 ggaaatatta taatatagat caaactcgcc gtttaggagt agaattaagt ctgagtcaaa
     5941 attttttaga tgatgattta atctttagag aaagtctaac ttatcttgat gctaaaattt
     6001 ctaaaggtgt taatgacggc atgagaattc cttatgtttc aaaaatcaaa gccacagctg
     6061 ggcttgaata cgcttggaat aaaaatttct caaattttat tgatctaacc tatttttcta
     6121 gagcaaaaga tggtggaact atagatgaaa atacaggaaa aatgtctaaa aattcttgga
     6181 taagggatta ttttttaaca gatattggca tgaaatataa ttataaaaaa ttacaaattt
     6241 tagcaggaat tcgcaatctt ttcgataaaa gatactacac ctatcaagac agtataaatg
     6301 atcaatacct agttgggaat ggcagaaact actatgttga atttaaatac gcattctaaa
     6361 attttagtga ttatagggct tttggtagct tatataatcg cttcttttac agcactttgc
     6421 ttaggagatg agaatttaaa cccaaaagaa cttttttcat atatctttag ccaagatgaa
     6481 attttaagac aaatcatcat agatggacgc ttaccacgga ttataatggc gattttaatc
     6541 ggtatgcttc tagctagtag tggggctatc actcaaaatg tattttcaaa tcctatagcc
     6601 gatccttata tcataggtat agcttctgcg gcaacctttg gagcggtttt ggcgtatttg
     6661 ttaaaattga atgattatta ttatggaatt ttaggttttg tttgctctgc cttttttgcc
     6721 ctaggagttt ttaaaatttc ttctaaagct tctatagcga ctttactcat tatcggcata
     6781 gcagcttcat cttttttagg agcttttact tcttttttca cttatcttat aggcgaggat
     6841 tcttttaaaa tagtcgcttg gcttatggga aatataggca atgcttcttg gtttcgtgtg
     6901 ggaattttaa tcttgccttt aattttttgt ttgttttatt tttacgctca taaaaacgaa
     6961 ttaaacatac ttttaagcgg agatgatgaa gctagaaatc taggggtaaa tgctcaaaaa
     7021 ttaaagataa atttactcat tgtctcatcc ttggctgtat cttttgcggt tgcttttagc
     7081 ggacttatag gctttgttgg actaatcatt cctcatacta taagactttt gcttaaaaat
     7141 tatgataatg ccttagttat ccctttatgt acagcatttg gaggattatt tttacttatt
     7201 tgtgatactt tagcaagaac tcttttagcc cctgtacaaa ttccgattgg aattttaact
     7261 gcattttttg gagctcctat ttttttatac ttggctttaa gtgctaggag atttttataa
     7321 tgctaaaaat acaagattta agctttgctt atcaccaaaa agatttacta aaaaacattc
     7381 atttagaact taaaaatcag gcttttatag gaattttagg gccaaatggc tcaggtaaaa
     7441 gcactctttt aaaacttata cttaaaaatt taagtccaaa taaaggagaa ataagtcttt
     7501 ttaacacaaa tatcaaagat ttttctctta aagaatttgc caaaatttgc ggatttgtgc
     7561 ctcaaaaatc agaattaaac acccctttaa aagtcatcga tgtgctttta atgagcaaat
     7621 atgcgaattt aaaacacgct tttagttctt attctaaaga agatatttta gaaattaaag
     7681 aatttgctaa ggatttaaga cttgaaaatt ttctagaaag aagcatactt tctttaagtg
     7741 ggggtgaatt tcaaagaatg cttttagcaa gagctttact taaaaagcca aaaattcttt
     7801 ttttagatga acccacttca gcccttgatt taaactatgc tatagagctt ttaagccttt
     7861 gcgaaaaact agttaaagaa aaaaatatag ccgttgttgc tatcttgcat gatttaaatt
     7921 tagcttctat gttctgcgat aaaatccttt ttttaaaaga aggggagata aagtattttg
     7981 gaacgagtaa agagcttttt actcaagaaa ttttaaaaga aatttatgat ttaaactgcg
     8041 agattattta taaaaattct aaaccttata ttttagcttt aaaggagaaa aaatgaaaaa
     8101 aattttaatt attatgagtt tatttttaat cacactaaat gcaaaggaac gccttgtagt
     8161 gcttgatcct gcaagcatag aaaccctttt tatgcttaag gctgaagatc aaatcgtagg
     8221 cattgccact ttacaacact caaatatcta tcctaaagat caaacctcaa aacttacaag
     8281 cgtaggcact ttttcaaatc cttcacttga aaaaatagta gcattaaaac caagtttggt
     8341 gattttaagc tcttattctt taaatttaga agaaggactt aaaaattttg gtatcaaaag
     8401 tatcaattta aaagccgagc gtttagaaga tataacaaaa aatatcacaa ccttaggcca
     8461 aatcaccaaa aaagaaaaag aagcagagtt tttaaaacaa gaatttaccc aaaatttaaa
     8521 aaaattaagc gataaacccc taaataaaag tgcgatttat ctttattcta gcaacccttt
     8581 aatggccttt aatgataatt ctttaatagc tgatatttta agacttatag ggattaaaaa
     8641 tttaagcccg caaagtcaaa tttcaagacc tgttatatca gcagaatata tactgaaaca
     8701 aaatccagac atactcattc ttggaattaa tgctaaaaac aaccttttag atacaaatgc
     8761 tttattgaaa aataccaaag cagttaaaac aggaagtatt tattttaaca aagatacaca
     8821 tatattatta cgtcttagtc ctaagataat agatagaatt caagaattta aaacaaagct
     8881 agaaaataac aatttttaat cacccaatct tgctttaaaa aattcgcaag tttgacaaag
     8941 tttttctatg cgtttatctt cttcaaaagc ttttttcatc atctttatac gcggtgattt
     9001 aaaaagctta tcaaagttat tttcaaaaac atttcctaag ttaatatctg ctttagcatc
     9061 caaacagcaa ggcaccaaac ttccatcact taaaatccca atttgctctt ttaaagcatg
     9121 acattttcct tttttataaa ggggttcatc ttttaaattt ggccatttaa aaagtttatt
     9181 ttgatgaagc aaaatatgtc tttgcaagcg atttttactt aagtttgtat caatcttaac
     9241 ttcaaattct ttggctaaaa actcataaat ttttaaattt gacttaggtg ctttaaaatt
     9301 agcatctaaa ttccaaagtc ttagattgat aaaagaaagg cttttttgct ctaaatgctt
     9361 tttgcaaagt tctaaaatag gcttaaaata ctgttctaaa gaaattttgc tttgacttaa
     9421 aaaagacatt aaagaaatat tgatttgatg gatattctca taccctaaca ataaagcttg
     9481 atttttagaa tttaaataaa agccacttgt agtgatttca agcttcatag cttcactttt
     9541 tgcgattttt agataatttt ccaaattagg taaaagcaaa ggatcaccca aaagatgaaa
     9601 ggtaaaaagc tcagccttat tagaaatttc atgagctaag ttttgaaatt tttcttcact
     9661 cattaccccg cgaattcctt ttcgagaagg acaaaaatcg cattttaaac cacaaatatc
     9721 gcttaattct atatatattt ttttaaattt cattatattt cctagagtaa acattttacc
     9781 aaaatttatg aaatttatta aaatatgtaa catttttatc gatattttta tcttttttat
     9841 ttctcttctt tatttttaaa tatattaaac aaaaatcaca ctatacttaa ataaaaatct
     9901 aaaattaagg aagggtttat gcaagagctt actcgcacga aaaaaattcg ctctattatt
     9961 gctgcaagta gcggaaattt agtagagtgg tttgactttt atatctacgc ttttacagca
    10021 acttattttg ctcatacttt ttcaacttca gataatcctg ttatccagca aatcaatgcc
    10081 tttggggttt ttgcagcagg gttttttatg cgtcctatag gctcttggct ttttggctct
    10141 ttagctgata aagtaggtcg taaaaaatct atggttatat cagtggtttt aatggctttg
    10201 ggctctttta tgatagcagc cttgccaagc aaagatacag tgggagatct tgctattatc
    10261 ttacttttaa tagcaagact cattcaaggt cttagtgtag gcggggagta tggcatagca
    10321 gctacttatc tttcagaact tgctacagaa ggaaaacgcg gtttttactc atcttttcag
    10381 tatgtaaccc taataggtgg tcaacttttg gccgttgcaa gcattagtat aatgttttta
    10441 ttttttagca ttgatgatat gaaagattat gcttggagaa tactttttgt aataggcgga
    10501 attttagcac taggctcgct ttttgtaaga aaaatgatga atgaaagtgc tacaaaactt
    10561 caccagcatg aagatcgtgg tactttaaaa gcattatgca aatcttggaa acctttttta
    10621 atggtacttg gggttacttc tggaggttct ttagcttttt atactattac aacttatact
    10681 aaaactttta tggaaaatac gggtatggat aaaatgcttg ttaataatct tttcttaggt
    10741 gctttattta tactaatgat cattcaacct ctttttggat atataggaga taaaataggt
    10801 cacaaacgat ctttaattgt attttgtatt ttggcattgg taggaattta tcctattttt
    10861 tcacttatag ccaataacgc acaaaataat ccttctttga catttatgtt ggtggtatta
    10921 ttgtttgtta ttttaagttt ttatacttca gttgctggga tttttaaagc aaaacttttt
    10981 cctgaacatg taagagcttt agggacaggt ttgggttatg ctatttcaaa tgctgttttt
    11041 ggaggatctg ctccttgggt tgctttacaa tttaaaaatg caggtataga aaatggcttt
    11101 tttatctata tagctatttt tacaatcatc atgcttatag ctactttata tttgcctaaa
    11161 aaatcacagc ttaattaatt ttaacgcatt taaagaaagt accgaaagtg cggtactttc
    11221 taactctttt aaggttttaa attcataatt tttattttca ttgtttaaaa tttgatgata
    11281 aaccttgata ttaagtttat acttagtata gccgtgctta aactccccta caaaactcat
    11341 atctttagaa agtttatact ctccttcttt aaaaaaagga aaattataca tacctttata
    11401 aagcttatct tggcttttct gtatcgcaaa ttttttatta aattcaaaca aaaaaagatt
    11461 taaatttaaa ctctcataaa gtattttttt agctcttgga taaagctctg tatgaaattt
    11521 gccttgacaa aaatcataca aaggacaaat tccacacttt gcatttttac tcacgcaaac
    11581 caaagcccct acatcaagca aagcttggtt gtgatcaaaa gcatgattta catttaaaag
    11641 ctctttagct cctttttcaa gttctttcat gctaggattt tctaaagcaa aaagacgaga
    11701 aagcacacgg cgtatattgc catcaacaaa agaaaccttt tgatcatagc caaaacaagc
    11761 tatagcacct gctgtataaa ctcctatgcc gcttaatttt tttagatcct caacttcttt
    11821 gggtaattta gccccaaact tatccacaca ttctaaagcc gcctttttta aatttctagc
    11881 acgagtgtag taaccaagcc cttgccaagc ctttaaaagt tcatcttcat tagcattagc
    11941 caaactttct aaagtaggaa attttttcaa aaaggggaaa taaaaccttt ctaaaactga
    12001 tttaacttga gtttgctgaa gcataatttc gctgatataa accccataag ctctatcaat
    12061 atgctttaaa ctttcatcac aattttgact ttgtaaatta cgccaaggta aagttttgcg
    12121 tccatttttt tcataccaaa gaagtaaatt ttcttgtagt ttttcaagct cttttttttg
    12181 cataaatgag agtataacaa aaaattttaa aattttttgc taaaattagc tcaaattaaa
    12241 ttattaagga tatccatgtt agcttttttt aaaggtttag gtataggttt tttatgttta
    12301 ttactttttg ttgcaggagt agtt
//
LOCUS       DAEDTT010000052        12106 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.052, whole genome shotgun sequence.
ACCESSION   DAEDTT010000052 DAEDTT010000000
VERSION     DAEDTT010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12106
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.052"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..677
                     /gene="pif1"
                     /locus_tag="KLC54_001023"
     CDS             <1..677
                     /gene="pif1"
                     /locus_tag="KLC54_001023"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HBD9177404.1"
                     /translation="LCGINKKVNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELDS
                     WVGSLNILEELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGM
                     KILLEPYTFFMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDID
                     HIFENGQLYVALSRATNPNTLKIYSTKKINFGFYFANILKIDSNVIEFYKKHNFLDLE
                     IQEQII"
     gene            687..1421
                     /locus_tag="KLC54_001024"
     CDS             687..1421
                     /locus_tag="KLC54_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177405.1"
                     /translation="MKKIFLSVFLALSLNAQNLEIDKIRTDLYSKSGANVLKKVEISL
                     EFDGNNLKENENKLIDAVNTVISGFFYEDIFTEIGKNNFKKTLEKFLDKKYKIKLDDI
                     YIISLSGVEKFDLEEFKRFLESTEAKEKGMGSEVKKALENLEVPKTQVPGVEKIPTPS
                     VPNLEAKQVEQLFKDSDEENKNDNGEINIDNLNTPKMTPDIEEKIKRDLIANPPQIFK
                     ENNASKPYHLPQTGYDIKLDENSTQN"
     gene            complement(1418..1927)
                     /gene="lolA"
                     /locus_tag="KLC54_001025"
     CDS             complement(1418..1927)
                     /gene="lolA"
                     /locus_tag="KLC54_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HBD9177406.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSDFIQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLVAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDVFKAK
                     IPQNYDIVR"
     gene            2028..4616
                     /gene="secA"
                     /locus_tag="KLC54_001026"
     CDS             2028..4616
                     /gene="secA"
                     /locus_tag="KLC54_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HBD9177407.1"
                     /translation="MFLNTLKAVFGTKNDREVKKYFKRVAQINALEGKYQNLSDDELK
                     AEFAKFKEQILSGEKNENDILNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVILS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKVEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANSKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKNIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYILDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMSRLGIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEVQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            4613..5818
                     /locus_tag="KLC54_001027"
     CDS             4613..5818
                     /locus_tag="KLC54_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD9177408.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYISTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALRDENLSGFDILVGSALIDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGMPKNPN
                     YDGIHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPADVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            5841..6626
                     /locus_tag="KLC54_001028"
     CDS             5841..6626
                     /locus_tag="KLC54_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HBD9177409.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSVIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELIRGTPLLVQVLLMYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLILTLPISIFSRYLERKCQK"
     gene            6688..6763
                     /locus_tag="KLC54_001029"
     tRNA            6688..6763
                     /locus_tag="KLC54_001029"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6721..6723,aa:Lys,seq:ttt)
     gene            6771..6846
                     /locus_tag="KLC54_001030"
     tRNA            6771..6846
                     /locus_tag="KLC54_001030"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6804..6806,aa:Val,seq:tac)
     gene            6898..6974
                     /locus_tag="KLC54_001031"
     tRNA            6898..6974
                     /locus_tag="KLC54_001031"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6932..6934,aa:Asp,seq:gtc)
     gene            6979..7054
                     /locus_tag="KLC54_001032"
     tRNA            6979..7054
                     /locus_tag="KLC54_001032"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7012..7014,aa:Lys,seq:ttt)
     gene            7074..7149
                     /locus_tag="KLC54_001033"
     tRNA            7074..7149
                     /locus_tag="KLC54_001033"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7107..7109,aa:Arg,seq:tct)
     gene            7156..7231
                     /locus_tag="KLC54_001034"
     tRNA            7156..7231
                     /locus_tag="KLC54_001034"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7189..7191,aa:Val,seq:tac)
     gene            7283..7359
                     /locus_tag="KLC54_001035"
     tRNA            7283..7359
                     /locus_tag="KLC54_001035"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7317..7319,aa:Asp,seq:gtc)
     gene            7426..7806
                     /locus_tag="KLC54_001036"
     CDS             7426..7806
                     /locus_tag="KLC54_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177410.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRVLMIVDKLEN
                     FKKFYKLKIDGIILKDNIDNFPKN"
     gene            7851..11363
                     /locus_tag="KLC54_001037"
     CDS             7851..11363
                     /locus_tag="KLC54_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HBD9177411.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIMAILAGMALF
                     SLSFESLYSSAYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWLCIIGFSFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGLIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFAKFEIN
                     VVYLFYFITLVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKESNLVCLFPEGTLSRHGQLNEFKAGFELACEYLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLILNFFIKRKSKELNINPQRGSY
                     APKEEAIGILLPASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNAQISQIYTS
                     KIFLEKLANKGINLNFDTNIHLIYFEDIVEDFKMQKTKIFSMMLAVSIIPSFILKSIF
                     TPLKNNLAIAAILFSSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTILPLLEGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFLGIYARNKK
                     LDALMFESLRIVVSGAEKLKNEVRTAFEMKFKKSIFEGYGATETTPVASVNLPNRFDA
                     DYWLIHRANKEGSVGMPLPGTAVHIVDPNNYENLKTNEDGLILIGGHQVMVGYLNDKE
                     KTDEVIKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGAIEEEIAKF
                     IDTEVVKFCATSLEDEKKGEQIALLIECNNEIFERVCEAIKNSNIPTLFKPRYYFQIE
                     KIPLLGSGKVDLKKVKELAKNLAL"
     gene            complement(11371..>12106)
                     /locus_tag="KLC54_001038"
     CDS             complement(11371..>12106)
                     /locus_tag="KLC54_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HBD9177412.1"
                     /translation="LIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFGN
                     TIFVGMPIVAGIFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVKK
                     ILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSYK
                     PTIVVIFAKMILAPLFFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLDS
                     NLAVSAVAFGVLFAFISMPILIWALL"
BASE COUNT         4253 a         1555 c         2148 g         4150 t
ORIGIN      
        1 tactttgtgg tatcaataaa aaagtaaaca atatcaatca agaaaaatta agcaaacttg
       61 agaccccact tgtatgcttt aaggctcagg ttaaaaaaga agataagaga ataaaagatg
      121 aagaacttga ttcttgggtt ggaagcttaa atatattgga agaattaaat attaaaatag
      181 gtgctcgtat tattttttgt gtaaataatt gggataagaa ttattataat ggtgagcaag
      241 gcattataga agatattctt tatgaagagg agaaaattta tattagtatt attaaaaata
      301 atgggatgaa aattttactt gaaccttata cttttttcat ggaagaactt gaacaatcag
      361 gtaaagattt tgttgttaat attcttgcaa gtgttacaca gtttcctatt aaattagctt
      421 atgctatcac tatacacaaa tcacaaggta tgagtattga aaaattagtg tgtgatattg
      481 atcatatttt tgaaaatgga cagctttatg tcgctctttc tcgcgctaca aacccaaata
      541 ctttaaaaat ttattctaca aaaaagataa attttggatt ttattttgct aatattttaa
      601 aaatagattc taatgtgatc gaattttata aaaaacataa ttttttagat cttgaaatac
      661 aagaacaaat catttaaagg cattaaatga aaaaaatatt tttaagtgtt tttttggctt
      721 tgagtttaaa tgctcaaaat cttgaaatag ataaaataag aacagatttg tattctaaaa
      781 gtggggcaaa tgttcttaaa aaagttgaaa tttctttgga atttgatggg aataatttaa
      841 aagaaaatga aaataagttg attgatgctg taaatacagt aatttcaggg tttttttacg
      901 aagatatttt tacagaaatt ggaaaaaata attttaaaaa aactttagaa aaatttttag
      961 ataagaagta taagattaaa ttagatgata tatatatcat atctttaagc ggagtggaaa
     1021 aatttgattt agaggagttt aaacgctttt tagaaagcac tgaggctaaa gagaaaggta
     1081 tgggcagcga ggtaaaaaaa gcacttgaaa acttagaagt tcctaaaact caagttcctg
     1141 gtgttgaaaa gatcccaact cctagtgttc caaatttaga agccaagcaa gttgaacagc
     1201 ttttcaaaga ttcagatgaa gaaaataaaa atgacaatgg agaaatcaat atagataatt
     1261 taaatacacc taaaatgact ccagatatag aagaaaaaat taaaagagat ttaatcgcca
     1321 atcctccaca aatattcaaa gaaaataatg caagcaagcc ttatcatttg ccacaaacag
     1381 gctatgatat aaagcttgat gaaaattcaa cgcaaaatta gcgaactata tcataatttt
     1441 gcggaatttt tgccttaaaa acatcggaat taatttttgg atttttaatt tgattgttta
     1501 gattgattat aacatcattt tcaaattcat ctttatagga tatgctttga atttgctctt
     1561 gattaagctt aattgtatag tttatattat catattttgc tacaagttta tctttgtcta
     1621 taagacttgc ttttttgaaa atttcattaa gatttggaat gttatcaaga tgagagaaaa
     1681 tgacttgttc tagatcgtgc tctactatgg ttacttgatt tttgttaata taaatctctt
     1741 ttttactagg agtatcataa ctccaatatg cttgatcctt actcagtata aaatgtccag
     1801 aataagaaag tgtagagttt ttggatttta ctatttggat aaaatcgctt gaaaaggtat
     1861 taaaattaag atcaagggca aaaagttgtc ctataaaaat aaaaaatatc aagaatgttt
     1921 ttttcattta ttttccttaa aaaaattata ttttttatat cattctagct aattttaatt
     1981 aaataatcgt tataataata gtttgaaaaa tttataaagg tttaaaaatg tttttaaata
     2041 ccttaaaagc cgtttttgga acaaaaaatg atcgtgaagt taaaaaatac tttaagcgtg
     2101 tagcacaaat caatgcttta gaaggcaaat atcaaaattt aagcgatgat gaattaaaag
     2161 ccgaatttgc aaaatttaaa gagcaaattt taagcggaga aaaaaacgaa aatgatatct
     2221 taaatgatgt ttttgctata gtcagagaga caggtaagag aactttaaat atgcgtcatt
     2281 ttgatgtgca gttaatcggt ggtatggttt tgcacgatgg aaaaattgca gaaatgaaaa
     2341 caggggaggg taaaaccctt gtagcgacct tgcctgttgt tttaaatgcc atgagtggaa
     2401 aaggcgtaca tgtcgttaca gtaaatgatt atctagccaa aagagacgct gagcaaatga
     2461 gtgcgattta taacttttta ggttttagtg taggcgtgat tctttcttct caaaacagtg
     2521 acatagagca caagcaagct tatgattgcg atattactta tggaaccaat aatgagtttg
     2581 gttttgatta tttgcgtgat aatatgaaat tttcaaaagt tgaaaaagtt caaagagagc
     2641 ataattttgt tattgtagat gaagtagata gtattttaat tgatgaggca agaactccgc
     2701 ttatcatcag cggtcctaca aatcgcactt tagatggtta tattaaagcc aatgaagtag
     2761 ccaagcaaat gcaaaaaggc gaagcagttt taccccctgc aaaacctgag ggtgattttg
     2821 tagtagatga gaaaaatcgt aatattttaa tcacggaagc aggtattgct aaggctgaaa
     2881 aactttttgg tgtagaaaat ttatacagtc ttgataatgc tatcttagca catcagcttg
     2941 atcaagcttt aaaggcgcat aatctttttg aaaaagatgt gcattatgtt ttaagaaata
     3001 atgaagttat catcgttgat gaatttacag ggcgtttaag tgaagggcgt cgttttagcg
     3061 aaggattgca tcaagcttta gaagccaaag aaaatgtaaa aattcaagaa gaaagccaaa
     3121 ctttagcaga tattactttt caaaattatt ttagaatgta taacaaactc gcaggtatga
     3181 caggaactgc acaaacagaa gcgactgaat tttctcaaat ttatagttta gatgttattt
     3241 ctataccgac aaatattcct attaaaagac aagataaaga tgatcttatc tataaaactc
     3301 aaaatgaaaa atttaaagct gtaattgaag agatcaaaaa agccaactct aaaggtcagc
     3361 ctgttcttgt gggaactgca agtatagaac gcagtgaagt ttttcacaat atgcttgtaa
     3421 aagaaaaaat ccctcatcat gttttaaatg ctaaaaacca cgagcaagaa gctttgatta
     3481 tccaagatgc aggtaaaaaa ggtgctgtaa ctatcgctac aaatatggca ggtcgtggtg
     3541 tggatataaa aatcgatgat gagattaggg ctttgggtgg gctttatatc atcggtacag
     3601 aaagacatga aagccgccgt attgataatc aacttcgtgg tcgtgcagga aggcagggcg
     3661 atcctggaat aagtcgtttt tatctaagtt tagaagataa tcttttaaga atttttggcg
     3721 gggatcgtat taaaaatatt atggatcgct tgggcataga agagggcgaa agcatagagt
     3781 caagaattgt tacaagagcg gttgaaaatg cgcaaaaaaa agtagaaagc ttacattttg
     3841 aaagcagaaa gcatttgtta gaatacgatg atgtagcaaa tgaacaaaga aaaactattt
     3901 atcgttatcg caatgagctt ttagatgaaa actatgatat tagagctaaa atttctcaaa
     3961 atatcgctga atatagtgca aatgtaatga atgattatat acttgatgaa agcggttcta
     4021 atgtaaattt tgaaaatttg aaagcaaaaa ttttatatga atgttcaact cagattagtg
     4081 aaaaagattt tgagaattta agcgtcattg aaatgcaaga taagctaagt caaattcttg
     4141 aaaattctta taacgaaaag atgtcaagac ttgggattaa agaattgcgt aatatagagc
     4201 gtattttata tttgcaagtt ttggataatg cttggagaga gcatttgtat caaatggata
     4261 ttttaaaaac aggaataggg cttcgtggat acaatcaaaa agatcctctt gtggaatata
     4321 agaaagaaag ttataatctt ttcttggagt tggttaatcg tattaaattt gatagtatta
     4381 agctactttt tagcgtgcaa tttaatcaag aagaggtgca aaatttagaa aataaagcca
     4441 atgaagaaaa tgaaaagcta cttcaaagct cagtagaaat gggcgcaagc gaagataatc
     4501 ttggcgaagc tgagtttaaa aaagttccac gcaatgctcc ttgtccttgc ggaagtggaa
     4561 aaaaatttaa agaatgccat ggaaaaagtg gtcctaagca aggaatttta gcttgaataa
     4621 aagcgtttta aaatatttac tttttaaata tttaagattt gataaagaac aaccctttat
     4681 caatctttct atgcttttgg cctttttagg agtttgtgta ggactttgcg ttttgcttgt
     4741 agctatggca attatgaatg gttttgataa agaatttgaa aaacgctttt ttgtgatgaa
     4801 ttatcctatt actattttgc ctaaatttta cgctcctgta aatgatgaat ttatagatga
     4861 gttaagaaaa acatttccaa atttgttatt tagcccttat ataagcactc aagttgttgt
     4921 aaagggagat aatcgttttg aaggtggtgt gctttttggc gttaatttta atgatgaaaa
     4981 aaaaataaac gaagtggttg ctaaagcttt aagggatgag aatttaagtg gttttgatat
     5041 acttgtagga tcagcactta ttgatgaatt tggtttgcat aaaaatgaca aactttcact
     5101 tattttttca aatcttaatc ctagtggatt ttctttagta ccacaaacta aacgttttga
     5161 tgttaaagcg cgttttactt cagggcttgc attttatgat aaagcttata tgtatacaga
     5221 tgttgatgca ttgaagaaag tacttggaat gcctaaaaat ccaaattatg atggaattca
     5281 tgtatatagc gataatgctt ttaaggatgt tgaaaaaatt aaatcttatt taaaagatga
     5341 ttatgctgta gtaggttggt gggaacaaaa taaaaatttc ttttcagctt tagagcttga
     5401 gaaaagagcg ctttttatag tgttgatgct tattattttg gttgcaagtt taaatatagt
     5461 aagttcttta ttgatgatag tgatgaatcg tcgcagtgaa atagcacttt tacttgccct
     5521 aggtgcaagc aaaaatgagg taaaaaagag tttttttgcc ttaggtatgc ttattggtgg
     5581 tggcggtatg atagtgggtg tggtgcttgc attttttgct ttatggcttt taggaaattt
     5641 tgatattgta actttacctg ctgatgttta tggaaccagt aaattaccac ttgatttgtc
     5701 tttaatggat ttttctttaa ctattgtggg tgctttaata atcatagctt tatcatcttt
     5761 ttatcctgca aaaaaagcaa ctcaaattaa tattttagat actttaagaa atgaataaat
     5821 tgtaattttg gagattttta ttgtctttgt ttactcaaaa aaataagaat tttaaacctt
     5881 taaaacctct atcaaagtca aaaataatca ctaatttaat tcttttgatt ttatttttaa
     5941 tattgttttg ttattgtagt tttagtataa gtgcttatca ttttgatttt agcgtaattg
     6001 cgacctataa agaaaaattt cttcaaggtt ttttaaatac tttaataatc agtttttttt
     6061 ctttattact gagtataatt ttgggtggag ttttttgtgc tttttcttta agttcaattg
     6121 tttttttaag atttttatct acattttaca tagagcttat cagaggaacc cctttactag
     6181 tgcaggtatt attgatgtat tatatcattg caaataattt aggacttgat aatcgatatg
     6241 tggctggagt tattatttta tcatgttttt ctgctgctta cttagctgaa atatttagag
     6301 ctggaatttt aagtatttct atatctcagc ttgagagcgc tagggcttta gggttaaaag
     6361 agatgcaggt ttttgcgtat gtaatttttc cccaagcttt aaaaaatatt ttagcaccgc
     6421 tgagtggaca atttgcaaat ttaattaaag atagttcctt attaagtgtt attgctgtaa
     6481 atgaattaac ccaaagtgcg caagagataa attcttatac ttttgctact cttgaagctt
     6541 atgtaatttt ggctattaca tatcttattt tgactttacc tataagtata ttttctcgtt
     6601 atttggagag aaaatgccaa aaatgattta aaaaagcttg acaaatagag ctaattttgg
     6661 cataatcaca tttttatttc agaaaatgtc tcgttagctc agccggtaga gcatctccct
     6721 tttaaggagg gggccgttgg ttcgaatcca acacgggaca ccattataaa ggtcgcttag
     6781 ctcagttggt agagcgccac ccttacaagg tggatgtcat aagttcgagt cttatagtga
     6841 ccaccatttt ataaaatcat aaataggttt tataatctct acttctttac tttggatgca
     6901 gcggtagttc agctggttag aatgccgccc tgtcacggcg gaggtcgcgg gttcgagccc
     6961 cgtccgctgc gccatcttgt ctcgttagct cagccggtag agcatctccc ttttaaggag
     7021 ggggccgttg gttcgaatcc aacacgggac accattttta ttgttagggt tatgaccctt
     7081 tcgtctagtg gcccaggaca acactctctc tgtgtggaaa cagaggttca aatcctctag
     7141 gggtcgccaa tcataggtcg cttagctcag ttggtagagc gccaccctta caaggtggat
     7201 gtcataagtt cgagtcttat agtgaccacc attttataaa atcataaata ggttttataa
     7261 tctctacttc tttattttgg atgcagcggt agttcagctg gttagaatgc cgccctgtca
     7321 cggcggaggt cgcgggttcg agccccgtcc gctgcgccat cttgcttggt aacaatttta
     7381 taagtataat ttgcaaaata ataaaaaata gaactaagga aaaaaatgct tattattgga
     7441 cataaattat taaaaaattt agatttttct tttattgaaa gtgttgaaga agttaaagat
     7501 aataaagttt attgtattgt ttatgatgaa aaattgattt cttatttaag tcaaaatgat
     7561 tttgaatttg ctattttagt tcaaaataaa gacgagatat ttttagccaa tgctttaggg
     7621 gctaagtttt tgctttgtaa tgataaaaaa cttgcaaaat ttgctagtaa ggttgcagaa
     7681 ttttatgttt ttgatagtag ggttttaatg attgttgata aattagagaa ttttaaaaaa
     7741 ttttataaat taaaaatcga tggaattatt ttaaaagata atatagataa ttttcctaaa
     7801 aactgataaa ttcttttgca aaataagtgc taattgacga ggtttaaata atgcaaaaaa
     7861 aatctttttt gaaaatttac ggattaattc cttttttact tatagcattc atcaatgctt
     7921 ttgtggattt gggacataaa attattattc aaaatactat ttataaggcc tatgaaggaa
     7981 gtgagcagtt atttttaaat gctatagtta atgctttgat tttacttcct tttattctta
     8041 tgctttctcc ttcgggtttt ttagcggata aatatccaaa aaatattgta atgaaaattt
     8101 cagcaatttt caatgttata ctcactttaa taatttgcat ttgttactat agcggtgctt
     8161 tttggatggc ttttattttt acttttataa tgggagcaca agcagcgatt tattcaccaa
     8221 gcaaatacgg ttttattaaa gaactcgtag gaaaagactt tcttgctatg ggtaatggtg
     8281 taattaatgc agtaagcatt atggcaatct tagcaggaat ggctttgttt tctttaagtt
     8341 ttgaaagtct ttatagttct gcatataatc aaacagatga aattttaaaa gaagtagcgc
     8401 ctttaggaat tgtgctaatt ttattttctt gtatcgaagt attttttgcg tggcgtttac
     8461 ctaagctcaa acaaacaaat aaagatttag tttttaacaa aaaagactat atccgtggaa
     8521 aacttctaat aaataatctt aagcttgttt ttaaaaataa aactatttgg ctttgtataa
     8581 tcggattttc atttttttgg gctatatctc aactttatct tgtcagcttt cctgtctttg
     8641 ctaaaaatga actttttata gaaaatactt tttatgtgca aatttcactc gctttttctg
     8701 gtataggagt gattttaggc tctttagtag ctggtaaatt ttcaaaaaat tatatagaac
     8761 ttggacttat tccacttggt gcattgggta tgtttttaat ggctttttta atgccttatt
     8821 ttataagttt attaagttat agttttttat ttttcttttt tggattttgc ggagctcttt
     8881 ttatcattcc tttaaatact ttaatccaat ttcatgccaa agaaaatgaa ttggggcaaa
     8941 ttcttgcagg aaacaatttt tttcaaaata ttgccatgtt aggattttta ctcttagcaa
     9001 ctttatttgc aaaatttgaa atcaatgtgg tttatttgtt ttattttatt actttagtaa
     9061 cctttatagg aagtttttat atacttttaa aacttccctt ttctttagtg cgtatacttt
     9121 taagcatagc ttttttgcaa cgataccgct tacttgtaga aggttttgaa aatataccag
     9181 aaaaaggcgg agctttactt ttaggtaatc atatttcttt tattgattgg gctgttgtgc
     9241 aaatggcaat tccaagaaaa atttattttg ttatggaaag aagtatttat tctaaatggt
     9301 atattaaaat ttttcttgat aaatttggta ttattcctgt atcaagtaca ggaagtaaga
     9361 cgagtttaga actgatagca aagcatatca aagaaagtaa tttagtttgc ttatttcctg
     9421 aaggtacgct ttcaagacat ggacaattaa atgaatttaa agcaggattt gaattagctt
     9481 gtgaatattt aagcgaagat gatggaaaaa ttattccttt ttatataaga ggactttggg
     9541 gtagtgcttt ttcaagaagc gatgaagaat tttcagcaag aaaccgcact ttaaataaaa
     9601 gaaaaattgc tatagctttt ggtaaagcta tgcctttgca ttctaaaaaa gatgaagtta
     9661 aagctaaagt ttttgaactt tcttttatgg cttggaaatc acaatgcgaa gctatgcata
     9721 ctatagcaag agcttggata gatacagcta aaaaaaatct aaatcaaata gctattatcg
     9781 atacactagc tggagatatt tcttatagaa aaatgttaac tcttagttta attctgaatt
     9841 tttttattaa aagaaaatcc aaagaattaa acattaaccc tcagcgtgga agttacgctc
     9901 ctaaagagga agctatagga attttattac ctgcttcttt tgcaagttct ttaaccaatc
     9961 tatctgtttt aatcgcagaa aaaattgcag taaatcttaa ttttactgct ggagaaaaag
    10021 ctctaaaagc agctataaaa aatgcgcaaa tttcacaaat ttatacttct aaaatttttt
    10081 tagaaaaatt agcaaataaa ggtataaacc taaatttcga tacaaatata catttaattt
    10141 attttgaaga tattgtagaa gattttaaaa tgcaaaaaac taaaattttt agcatgatgt
    10201 tagcagttag tattatacct agttttatac tcaaaagcat cttcactcct ttaaaaaaca
    10261 atcttgccat cgcagctatt ttatttagta gcggaagtga gggttctcca aaaggtgtta
    10321 tgctcaataa ccgtaatatt ttaagcaata tagcacaaat ttctgatgtg ctttgcacaa
    10381 gaaataatga tgtcattctc tcatctttgc caccttttca tgcttttgga cttaccgtaa
    10441 ctacgatttt gcctttgctt gaaggtatta aaagcatcac tttttcagat ccaaccgatg
    10501 ccttaggggt tgccaaagct gttgctaaaa ataatgtcac tattatgtgt ggaacttcaa
    10561 cctttttagg aatttatgca agaaataaaa agcttgatgc tttaatgttt gaaagtttaa
    10621 gaatagttgt atcgggcgct gaaaaactaa aaaatgaagt aagaactgct tttgaaatga
    10681 agtttaaaaa aagcattttt gaaggttacg gggctacgga aaccacgcct gtggcgagtg
    10741 taaatttacc aaatcgtttt gatgcggatt attggcttat acatcgtgcc aataaagaag
    10801 gaagcgtagg aatgcctcta cctggaactg cagtgcatat tgttgatcca aataattatg
    10861 aaaatttaaa aacaaatgaa gatggactca tacttatagg cggtcatcaa gttatggtag
    10921 gctatcttaa tgacaaagaa aaaaccgatg aagtgattaa agaaattgat ggtataagat
    10981 ggtacaacac gggagataaa gggcatttag atgaagatgg ttttttatat attgtcgatc
    11041 gttattctcg ctttgcaaaa attggcggag agatgatttc tttaggtgca atagaagaag
    11101 aaattgccaa atttatagac actgaagtgg ttaaattttg tgccacatct ttagaagatg
    11161 agaaaaaagg ggaacaaatt gctttactca tagaatgtaa taatgaaatt tttgaaagag
    11221 tatgtgaagc tataaaaaat tctaatatac ctacactttt taaacctaga tattattttc
    11281 aaatagaaaa aattcccctc ctaggttcag gaaaagttga tcttaaaaaa gttaaagaat
    11341 tagctaaaaa tttagcccta taatttgagc ttacaacaaa gcccaaatta aaattggcat
    11401 agaaataaaa gcaaaaagaa ctccaaaggc tacagcgctt acggctaaat tactatctag
    11461 tttagctttc attaccatag ctcctgctaa agtcatagta ggagctgcac tttctataat
    11521 agcaacgata gtagaatctt ttaattctaa attaaatatt tttaaacaaa atacaaaaaa
    11581 taaaggagct aaaatcattt tagcaaagat gacaactatt gtaggtttgt aagaggtttt
    11641 aatcgccata aagccaagtc ctaaacctat agcaaaaagt gcaacagggg ttgcagaggc
    11701 accaaataaa cgaataggag agaaaataaa ttcaggtaaa gtaattaatt tgcacaaaaa
    11761 accaaaaagc aaagctaaaa aaggtggaaa actaagaatt tttttaacat tagcaagtaa
    11821 actgactttt tctccatttc ccaaagaaag tataaaaggt ccaaaaagtg atataggtaa
    11881 agttgtggct aaagcatcgt aaaatataac ttcagcgcta aattgtgggt cattaaatat
    11941 accagcaaca ataggcatac ccacaaatat agtatttcca aaacaagaaa gcaaaaacat
    12001 actgactaaa gttactttag aaaaatgaaa aacttttcca ataagaatag caaaaaaagc
    12061 tgctagtata cagctaaaca atccaataaa aataaaaata atcaat
//
LOCUS       DAEDTT010000053        11836 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.053, whole genome shotgun sequence.
ACCESSION   DAEDTT010000053 DAEDTT010000000
VERSION     DAEDTT010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11836
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.053"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            33..794
                     /locus_tag="KLC54_001039"
     CDS             33..794
                     /locus_tag="KLC54_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HBD9177413.1"
                     /translation="MRFDFFVSKRLNISRNKALELIENEEVLLNGKSFKASFDVKNFL
                     ENLKKTQDLNPEDILLTDGLKLDLLSEIYVSRAALKLKNFLEENDIEIKHKNCLDIGS
                     STGGFVQILLENQALKITALDVGNNQLHLSLRTNEKIILHENTDLRAFKSEEKFELIT
                     CDVSFISLINLLYYIDNLALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDF
                     EKECAKLGWLLKNTQKSSIKGKEGNVEYFYYYIKN"
     gene            760..1614
                     /locus_tag="KLC54_001040"
     CDS             760..1614
                     /locus_tag="KLC54_001040"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HBD9177414.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKCLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGKDFLSFLKKEFVNLKFIVVGYDF
                     SFGKNRAYNAKDIEFLSGIKTIIVDEFSIGGIGVHASLIKDFLSKANLQKAKEFLGRD
                     YSIKGKMIKGQGLGSKELFATINLDCKGYFLPQNGVYATLLKSQRKIYKSVSFLGIRS
                     SDENFAIESHILEELGEKFTQGEFFELEFISFLRENQKFQDLKKLKNQIAKDIEQAKE
                     LLRKNDER"
     gene            1601..2311
                     /gene="cmoA"
                     /locus_tag="KLC54_001041"
     CDS             1601..2311
                     /gene="cmoA"
                     /locus_tag="KLC54_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HBD9177415.1"
                     /translation="MMKDELFKQSPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPINASICDLGCSSANFLIFLANLRKDFKLFGVDNSASMVEVAKSKAKAYGL
                     DISFFETNLCEFDFFVCDVFVANYTMQFIRPPKRQELLDKIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFMAFKD"
     gene            complement(2301..2522)
                     /locus_tag="KLC54_001042"
     CDS             complement(2301..2522)
                     /locus_tag="KLC54_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HBD9177416.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYRVGFPKDEWEDENISNP"
     gene            complement(2513..2953)
                     /locus_tag="KLC54_001043"
     CDS             complement(2513..2953)
                     /locus_tag="KLC54_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HBD9177417.1"
                     /translation="MRRLSILLTILIVINITACDSKTENYYKNHPSEAKEKAKECKES
                     GTLSEDCINALKVGVKPTNEESKYSPNTPKKSDNQILEALKQNDLKKEKTTKDINQSS
                     ENNESIIIPPITETPSEIYPSKTTENNQSSIFSDDVNITQEKLP"
     gene            complement(3012..3644)
                     /locus_tag="KLC54_001044"
     CDS             complement(3012..3644)
                     /locus_tag="KLC54_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HBD9177418.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNHGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            complement(3655..4305)
                     /locus_tag="KLC54_001045"
     CDS             complement(3655..4305)
                     /locus_tag="KLC54_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HBD9177419.1"
                     /translation="MKIFIFLLAISLNIFALESYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFEDDTNIPKKYRTTWSDYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
                     LVLYDKEPLYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF"
     gene            complement(4302..4928)
                     /gene="nth"
                     /locus_tag="KLC54_001046"
     CDS             complement(4302..4928)
                     /gene="nth"
                     /locus_tag="KLC54_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HBD9177420.1"
                     /translation="MKRNLEIKELFLKHFNKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLEEEKLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTGIFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            5009..5830
                     /gene="peb4"
                     /locus_tag="KLC54_001047"
     CDS             5009..5830
                     /gene="peb4"
                     /locus_tag="KLC54_001047"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HBD9177421.1"
                     /translation="MKKFSLVAAALIAGVALNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGSKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            5830..6894
                     /gene="fbaA"
                     /locus_tag="KLC54_001048"
     CDS             5830..6894
                     /gene="fbaA"
                     /locus_tag="KLC54_001048"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HBD9177422.1"
                     /translation="MGVLDIVKAGVISGDELNKVYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKFD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKDAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMVKRLEIAFEDLNCINKN"
     gene            6989..8431
                     /locus_tag="KLC54_001049"
     CDS             6989..8431
                     /locus_tag="KLC54_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HBD9177423.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKVERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            8428..9381
                     /locus_tag="KLC54_001050"
     CDS             8428..9381
                     /locus_tag="KLC54_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HBD9177424.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNLTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            9368..10243
                     /locus_tag="KLC54_001051"
     CDS             9368..10243
                     /locus_tag="KLC54_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HBD9177425.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFISYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFAFSLCKKDDIFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKLV"
     gene            complement(10235..11578)
                     /locus_tag="KLC54_001052"
     CDS             complement(10235..11578)
                     /locus_tag="KLC54_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HBD9177426.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(11629..>11836)
                     /locus_tag="KLC54_001053"
     CDS             complement(11629..>11836)
                     /locus_tag="KLC54_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HBD9177427.1"
                     /translation="IKILEKNSTSLSVFELNQLFYSPHQALRQNPILLDKLEKLNSLI
                     SQNWHETIHKRLKNTYDISYMDSL"
BASE COUNT         4310 a         1478 c         2037 g         4011 t
ORIGIN      
        1 gacttggaaa aaagaataaa tgagagttta aaatgagatt tgattttttt gtttcaaagc
       61 gtttaaatat cagtagaaat aaagctttag agcttataga aaatgaagag gttttgctta
      121 atggtaaaag ttttaaagct tcttttgatg tgaaaaattt tttagaaaat ttaaaaaaaa
      181 cgcaagattt aaatcctgaa gatatacttt taactgatgg gttaaaattg gatcttttaa
      241 gtgaaattta tgtttcaagg gcggctttaa aattaaaaaa ttttttagaa gaaaatgata
      301 ttgaaataaa acataaaaat tgtcttgata taggatctag tacgggtggt tttgtgcaaa
      361 ttttacttga aaatcaggct ttaaaaatca ctgctcttga tgtaggtaac aatcaactcc
      421 atctaagttt aagaacaaat gaaaaaatta tcttgcatga aaatacagat ctcagagcct
      481 ttaaaagtga agaaaaattt gaacttatta cttgtgatgt gagttttatt tctcttatta
      541 atttacttta ttatatcgat aatttagctt taaaggaaat tatcttactt tttaagcctc
      601 agtttgaagt agggaaaaat atcaaaagag ataaaaaggg tgttttaaaa gatgataagg
      661 caatcttaaa ggcaagaatg gattttgaaa aagaatgtgc taaattgggt tggcttttaa
      721 aaaatacgca aaaatcaagc attaaaggaa aggaaggtaa tgttgaatat ttttactact
      781 atatcaaaaa ttaatattac ttctttagcc ataggttgtt ttgatggtat gcatttagga
      841 catctaaagc ttgtaaaatg tttagatgag aatggggctt tgttagttat taataaattt
      901 aagggtcaat ttctttgttc aaatcgtcaa aaagaagaaa tttcaggaaa aaaagttata
      961 gaagtggatt ttgaaagtat aaaatcttta gatggtaaag attttttaag ctttttgaaa
     1021 aaagaatttg tcaatttgaa atttatagta gtgggatatg atttttcttt cgggaaaaat
     1081 agggcttata atgctaaaga tattgagttt ttaagtggga taaaaactat aatagttgat
     1141 gaatttagca taggcggaat aggtgttcat gcaagtttaa ttaaggattt tttatcaaaa
     1201 gcaaatttgc aaaaagcaaa agaattttta ggaagagatt atagtatcaa agggaagatg
     1261 attaaaggac aaggtttggg ctctaaagaa ctttttgcga ctataaattt agattgtaaa
     1321 ggttattttt tacctcaaaa tggtgtttat gctactttgt taaaaagtca aagaaaaatt
     1381 tataaaagtg tgagtttttt aggtataagg tcaagcgatg aaaattttgc tatagaaagt
     1441 catattttag aagaattggg tgaaaaattc acacaagggg agtttttcga actcgagttt
     1501 atatcttttc taagagagaa tcaaaaattt caagatctaa aaaaacttaa aaatcaaatt
     1561 gccaaagaca tagagcaagc taaagaatta ttaaggaaaa atgatgaaag atgaactttt
     1621 taaacaaagc cctaaaaaac aatttgaatt tgataaaagc gtggctagtg tttttgatga
     1681 tatgatcaat cgttctgtgc cattttatag agaaaattta gaactttgtg gcaatttatt
     1741 ggctaaaatt ttacctataa acgcaagtat ttgtgatttg ggctgctcaa gtgctaattt
     1801 tttgattttt ttggcaaatc taagaaagga ttttaaactt tttggcgtgg ataattctgc
     1861 ttctatggtt gaagttgcaa agtcaaaagc taaagcttat gggcttgata taagtttttt
     1921 tgaaactaat ttatgtgaat ttgatttttt tgtttgcgat gtttttgtgg caaattatac
     1981 catgcagttt attcgccctc ctaaaagaca agaattactt gataaaattt ataaaaattt
     2041 aaactctaaa ggcattttga ttatgagtga aaaaatcctt tatgaagatg cttttttgtc
     2101 taaaaatatc atagaacttt atgcagatta taaagaaaaa caaggttatt ctaaatttga
     2161 aattgcagcc aaaagagaag ctttagaaaa tgttttaatt ccttatagtc aaaaagaaaa
     2221 tttaaacatg ctagaaaagg caggttttaa gaaaatagaa agtattttta aatgggcaaa
     2281 ttttgaaact ttcatggctt ttaaggatta gaaatatttt catcttccca ttcatctttt
     2341 ggaaaaccta ccctatacgc attaacacaa tcttgactga tgatagcttt gtgtctgcat
     2401 tctaaacttc ttttttttgc ttcttcgggg tgattttgat aatattctac acttttggtt
     2461 tgttcgcatg ctgcaaaaaa tataccaata aggcttaaaa aaagagttat tttcatggta
     2521 atttttcctg tgttatatta acatcatcgc taaagataga actttgattg ttttctgttg
     2581 ttttggaagg ataaatttca gaaggtgttt ctgttatagg tggtattata atactttcat
     2641 tattttctga actttggtta atatcttttg tggttttttc tttttttaaa tcattttgtt
     2701 ttaaagcttc taatatctga ttatcagatt tttttggtgt gtttggactg tatttactct
     2761 cttcatttgt tggcttaaca ccaactttta atgcattaat acaatcttcg ctaagagttc
     2821 cgctttcttt gcattctttc gctttttctt ttgcttcact aggatgattt ttgtagtaat
     2881 tttctgtttt gctatcgcaa gctgttatat taataactat taaaatcgta agtaaaatac
     2941 ttagtcttcg catttatcaa tctcctaaaa ttttttaata tcttagcaaa cttgtataaa
     3001 gcaacgataa attatttttc ttcattgtaa gaaaaaatag gtaaagacca ttgatatttg
     3061 atagctaaaa gccttgcaaa aactcctata aaaagagtta aaagtgtgca aactagagca
     3121 ttaagctcaa gccaaattat tagagaataa tagattgctc ctgcaattat ggcaattcct
     3181 gcataaattt ctttttgaaa caccaagggg attctcatac ataaaatatc tcttaaaatt
     3241 ccaccaaaaa caccggtgat tacagcagca gcaacggcta tgataaagcc atggttttga
     3301 tctatggcta tttgagctcc aagtatgcta aaaacaacaa gtcctatagc atcaagagtt
     3361 agaaataaag tttcaagttt ggttactacg cgcggaattt ttgtggctac aagggcgcaa
     3421 aaacagatta aaataatata ttcaggatgt ttaacccaag ttaaaggata atgtcctaaa
     3481 agcacatctc ttatgcttcc gcctccaatt gctgttacga gagcaataaa aataactcca
     3541 aaaagatcca ttttatggcg tcctgcagct aaagcccctg tcattccttc tgcggaaata
     3601 cctatgatat aaagagtggt tatcgtaaga gcatttatct ccataattta taccttaaaa
     3661 tttatcacaa tttatttgat actgtttaat attttcatca tttacttcat ggtttggtac
     3721 ttgatagcat tctttaaatt tcggagtttt aataattttt acataaaaac ttggtatagc
     3781 aatacggttt ttaatgtata gtggttcttt atcgtaaagt actaaattta aaacttcgat
     3841 actttgaaat ttgaaagcca aatttctttc tctttgctcg atttcattcc aaattttatt
     3901 atttatttgt gcaatttgtg gggtaatatt gctcattaaa aatactgaat tttgagcagc
     3961 tttactaaag ctaaaagaag cattaggcgc agtgtgtcct cgtgtgtaac cactgttttt
     4021 ataatcactc caagtagtgc ggtatttttt aggaatattt gtatcatctt caaagcgagg
     4081 gcgttttttg atttgtttat cttttaaatt tgaagcttct actttataag caacggcttt
     4141 tgtgcctttg agtttataat catagcaatt tagataaaaa aacttatcta agatttgcga
     4201 gcaatttata ttgttaaaat aagaagaaaa atcagcacta ggtttgtaag attctaaggc
     4261 aaaaatatta agagatatag cgagtaaaaa gatgaaaatt ttcatttaag ttccttatct
     4321 ttacttttgc aaagatgatt taaaaaacat tctttacata aaggtttttt agctttacag
     4381 gtgtagcgtc caaaaagaac catggcttga tgaagatagt taagattgtc tttaaatatg
     4441 cctgttaaat cttcttctgt agcttctgga gtttttgctt tgctaagtcc taagcggtga
     4501 gaaactctaa aaacatgagt atctacagcc atgaaatttg ctccgcacca ttctattaaa
     4561 actacatgag cggttttttg tcctacgcct gccaaggatt ttaatttctc ttcttcaagg
     4621 ggaatttctc cgtcaaaatt ttcacaaact gcttttgcca tttttataag attttgtgct
     4681 ttattattaa aaaatgaaca agtttgtata taggttttaa gacttgataa atttgcattt
     4741 gcaagggatt tgatatcagg ataagcttta aaaagatcag gagtgatgag gttaactctt
     4801 ttatcagtgc attgggctga aagcatcacg cagactaaaa gctcatataa atttgaaaat
     4861 ttaagctctg ttacaggctt gttaaaatgt tttaaaaaaa gttctttgat ttctaaattt
     4921 cttttcattt tttaatttta gttaattagc tttaaaccaa gtttagatat aattgatttt
     4981 atatacattt tattaaaaag gaaacctaat gaaaaaattt tctttagtcg cagcagcttt
     5041 gattgcaggt gtagctttaa atgtaaatgc agctacagta gccactgtta atggcaagag
     5101 cattagtgat acagaagtaa gtgaattttt tgcccctatg cttagaggac aggattttaa
     5161 aactttgccg gataatcaaa aaaaagctct tattcagcaa tatattatgc aagatttaat
     5221 tttgcaagat gctaaaaaac aaaatttaga aaaagatcct ttatatacaa aagaacttga
     5281 tcgtgcaaaa gatgcaatac ttgttaatgt ttatcaagag aaaattttaa atactattaa
     5341 aattgatgcg gctaaagtta aagcttttta tgatcaaaat aaagacaaat atgtaaaacc
     5401 tgcaagagtg caagcaaaac atatcttagt agcgacagaa aaagaagcta aggatattat
     5461 taacgaactt aaaggttcaa aaggtaaaga actagatgct aaatttagcg agcttgctaa
     5521 agagaaatca attgatccag gttcaaaaaa ccaaggtggt gagcttggtt ggtttgatca
     5581 atcaactatg gtaaagcctt ttacagatgc tgctttcgca cttaaaaatg gtactattac
     5641 tacaactcca gtaaaaacga attttggtta tcatgtaatc ttaaaagaaa attcgcaggc
     5701 taaaggtcaa atcaaatttg atgaagtaaa acaaggtatt gaaaacggac ttaaatttga
     5761 agaatttaaa aaagttatca atcaaaaagg ccaagatctt ttaaatagtg ctaaagtgga
     5821 atataaataa tgggtgtttt agacattgta aaagcagggg tgattagcgg agatgagctt
     5881 aataaagttt atgactatgc taaagcagag ggttttgcta tccctgctgt taatgttgta
     5941 ggaactgatt ctattaatgc agttttagaa gctgcaaaaa aagttaactc tccagttatt
     6001 atccagtttt caaatggtgg ggcaaaattt tatgcaggga aaaattgtcc taatggagaa
     6061 gttttaggtg caattagtgg ggctaaacat gtgcatttac ttgctaaagc ttatggtgta
     6121 cctgtgattt tacacactga tcatgctgca agaaaacttt tgccttggat tgatgggctt
     6181 attgaggcaa atgcacaata taaaaaaacc catggacaag ctttatttag ttctcatatg
     6241 cttgatctta gcgaagaaag tttagaagaa aatcttagca cttgtgaagt ttatcttcaa
     6301 aaatttgatg ctttaggtgt cgcgcttgaa atagaactag gttgtacagg tggcgaagaa
     6361 gatggagtgg ataatacagg tattgataat tccaagcttt atacccaacc agaagatgta
     6421 gcacttgcat atgaaagact tggaaaaatt agtgataaat tttcaattgc agcaagtttt
     6481 ggaaatgtac atggagttta caagccagga aatgttagtt tacaacctga aattttaaaa
     6541 aattcgcaaa aatttgtaaa agataaattt gctttaaata gcgataagcc tataaatttt
     6601 gtatttcatg gtggtagcgg tagcgagcta aaagatatta aagatgcagt aagctatggc
     6661 gtaattaaga tgaatattga cacagatacc cagtgggctt tttgggatgg ggtgcgtgaa
     6721 tatgaactta aaaatagggc ttatttgcaa ggacaaattg gaaatccaga aggtgatgac
     6781 aagccaaata aaaaatacta tgatccgcgt gtttggttaa gaagcggtga agaaagtatg
     6841 gtaaagcgtc ttgaaattgc ttttgaagat ttaaactgta taaacaaaaa ctaagcattt
     6901 taaaggctta gttttatttt gttttaaaaa tttttatcaa attgagtagc aatctttaaa
     6961 ataaaatttt taatgaggta ttggtttcat ggatattaaa tcagatgaaa tttcagaact
     7021 tgttttgcct gaaggcaaag acgcaagagg ttctttggtt tattttaaaa ttatttttat
     7081 tccagctttt ctttatattt tgattttatt gggttatttt aatgtaattg actttaaggt
     7141 tgaattgcat acggttatta tgacaggtgt gatttttttt acagcattga tttttgctag
     7201 acatagtgct gagtatgcgt atagtatttt tgaacaacaa aaagatgaat ttaaacaggc
     7261 tttaaaaaga catattatga ggcattttct tgccataggg aaagacacga aatcaaatgc
     7321 caattttgat gactttgctt atacatatat taaaggtgca agaaatgaga attttgctag
     7381 tataggttcg gcaatttttc caatgatggg aattttagga acttttatca gcatagcttt
     7441 ttcaatgcca aattttagct ctagtgatac agccgcttta gaacaagaaa ttgcagattt
     7501 gttaagcgga gtaggaactg ctttttatgt ttcaatttat ggaatttttc ttgcattatg
     7561 gtggatgttt tttgaaaaat atggtaaaag taaaatagat cgtttgttaa atcgtcaaaa
     7621 aaacgctaca agtggatttt tttggacaaa agaagagctt gatcaaagat atttaaccga
     7681 gagtttgcaa cattttgaaa aaattggagc aatttttaaa caagttagta atgatgattt
     7741 ttttgcagag cttgatcatg ctattgatag aaaatttggt attttccaag atatgctaaa
     7801 tgtagaagaa aaggctatta gattaagtag tgaacacatc aaacaaacca tgggtgagct
     7861 tagtaaagca caaagagatc aacgcgatct tggaaagctt tatagtgaaa tgttaaatgg
     7921 tataggttta ctcaatcaaa atttaaaaga aatcaataca agaatgtcag aacaatataa
     7981 tcgcttgctc gatatcagta gtgataaaat tcatcatctt gataagacgc taagtgcatt
     8041 cgatgaaaaa gtagagcgtt ttggtaaaaa ttttgaactt tatgaaaaag caatgttgga
     8101 aagtcaagaa aaggtttttg aaggatttaa agcaagcttg tttgaaggta tgcataaatt
     8161 taaagaagta tatgaagaag aaaaaagtat cgatgctaaa atcaaaatga tggatgagct
     8221 taaaaaagaa atgaaagcac ttgatgaaga aacaagtcaa atgatgagca agctttctgg
     8281 agatgaaaat cagaataaag aaaatgaaac caaacaaata gaagattttt cagagtctaa
     8341 gactgaagaa aatcaagatg aaattcaagc agaaatatct aagcaagaaa gcaatgatga
     8401 gctaaaaaat gaagataaag aaaataaatg aaaaatgagt caaaagaaga tagcaatttt
     8461 tggatagctt atgctgattt aatggcagga ttgctgtttg tttttatttt gctaataggt
     8521 gctattgttg taaaatatgt tttaactcaa agtgatttaa aagaaatcaa agataatctc
     8581 aataaacaag aggcacgctt agaggagagc aaagaagagc ttagaaataa agaagccata
     8641 gtgtttaaac taagttctga tttaaacaat gcttctagtg ctttaaatct tgctaattct
     8701 caaaaagcag aattagaggc taatattaca aattacaagc agttaagcaa agatttaaac
     8761 ttaactttag ataataaaga taagcaaatt ttgattttac taggtcaact agagaaaaaa
     8821 gatgaagagc ttaaaaattt acaagaagat tttcaaaaag ctaaagaaaa ggtgcaaaat
     8881 cttggtttga ttcgtgaaaa tttaagcaag gaattacaaa gtaagcttga taataatatc
     8941 actatagatg aaaagacagg atctatttct ttgcctgctg aagtactttt tgataaagat
     9001 tcttatgtgt taaaaaatga ggcaaaggca agtttgagaa aaatcttaag cgaatatttt
     9061 gatgctattc ttgaagatcc aaaaattttt tccaacattg aaaatatcat tattgaagga
     9121 catactgata gtgatggatc ttatatttat aatttagatt tgtcgcaaaa aagagcttat
     9181 gaggtgatga attttatcta tactttttat aagagcgata aacttcaaaa gcttttaatg
     9241 gcaagtggac gttctttttc agatcctgtg tttgtcaatg gagttgaaga taaggataag
     9301 agtcgtcgca tagaaataaa atttagcatt aaaaatgata atgctttaaa ggatgtagaa
     9361 aaattctttg aatttcatta aaacaattag tcctatacaa aaaatcaatt ttaacggatt
     9421 tgaattttat attaaaagag atgatttatt aggagaaatt aatggaaata aagctaggaa
     9481 acttgctttt tatatccatc aaagatatcc taaaaatcaa tcttttataa gttatggagg
     9541 aagccaaagt aatgctttgg cggcattaag tatttttgct aaacaaagat catataagct
     9601 tgtttttgct tgtgaaaaaa tttctacttt tcttaagaat aatccttgtg gaaactatgc
     9661 tttagcttta gaaaatggtg ttgattttgt agaaaatatc cattctttat ccttaaagca
     9721 atttgctttt tctttgtgta aaaaagatga tatttttata gaacaaggca tagctaattt
     9781 agaagctcaa tatggctata tggaacttgc tcaagaaatt caaatgcaaa gtcaaagttt
     9841 aaagcttgat tttgatattt ttttaccttc gggtacaggc acttcggcag cttttttggc
     9901 aaagtattct aaatttaaag tatttacttg cgcttgtgta ggtgatatta aatatcttaa
     9961 aaaacaaatt ttaacattag atccaagcta tgatttttca aatttagaat ttttaacaag
    10021 tgataaaaaa tatcactttg ctaagccgta taaagaattt tatgagcttt atatggattt
    10081 aaagttaaag tgcaatatag aatttgactt gttgtatgat attttaggat taagtatagc
    10141 attaaaacaa gagtggaaaa aaccattgct ttatatacat caaggtggaa ttttaggaaa
    10201 ttccactatg ttagagagat ataaatttaa aaaattagtt taaaattcca tagataaaaa
    10261 tgattaaaat aatcaaaggt actatatatt ttacataata aaaccaaatt ccaaaccatg
    10321 aacttttaag tgtattgtta ttgctaagtt cttttagact ttcttgtttg cctaagatcc
    10381 aacctacgta aatgcagcaa aaaaatgcag ttaaaacaaa caaaatattt ccactaatga
    10441 aatcaaaact atcaaaaatg ttttttcctt tgatgataac aatatcacgc caaggcccat
    10501 aagttagaat acaaggaaga ttaccaagta tgaagataaa tcctagagtt aggttaatag
    10561 aaagattttt agaatattta aatttttctt ctaatacact aataataact tgataaattg
    10621 gtaagcttgt ggttaaagct gcaatcaaga gtaagacaaa aaataaaata cacacaatgg
    10681 tgccaaaatg gatatgagaa aatgctatag gtaaagtttc aaaaaccaaa gaaggcccgc
    10741 tatctggagc aagtcccgct gagaaaagtg ctggaaaaat cataaaacca gccaaaacag
    10801 ctatgatagt atttaaaacc cctgtataaa tagcggtttt tgccatattt tcatttttat
    10861 taagatgaga tgaaagtgtt atcattaccc caaaacctag ggataaagca aaaaagactt
    10921 gtcctaaaac atcgattaaa agttttggtg ataaaatttt actaaaatca ggttcaagat
    10981 aaaatttaac tccagccata gctccatcaa gggttaaatt gcgtcctaca acaataataa
    11041 gacagataaa taacaaaggc attaaaaatt ttacggattt ttctatacca tctataatgc
    11101 ctctttttaa aataatataa ttaataatta caaaaacagt ggtaaaaata ccaactccta
    11161 aaggattgaa ggctattttg tcgttaaaaa actgatgagt aaattctttg cttactacat
    11221 tagcaagact aaaattccct agggttaatt cccaaatata aactaaaacc catcctccaa
    11281 gtaccatgta gtaagccatt atgccaaagc ttcctaaaag tcccatatat ccaatacttt
    11341 gccatttttg tttgaaagca tctacgctat ttgtcatcgc ttttctgcct atgacatttt
    11401 caactaaaat aacaggaatg cctatgataa tcatagctat acaaaaaact aatacataag
    11461 caccgccacc attttctcct acaagatagg gaaaacgcca agttgctcca aatcctatgg
    11521 ttgctccagc aactgttaga atataagtta gtgtgctact ccatgtttgt ctttgcatga
    11581 ttatcctttc gaaaaagaat tattttacct aaaaataact ttaaaaactt ataagctatc
    11641 catatagctt atatcgtaag tattttttaa gcgtttgtgt atcgtttcgt gccaattttg
    11701 agatatgaga gagtttaatt tttctaattt atctaataaa atcggatttt gtctaagagc
    11761 ttgatgtggg gagtaaaaaa gttgattgag ttcaaataca ctaagtgaag tagaattttt
    11821 ttctaaaatt ttaata
//
LOCUS       DAEDTT010000054        11732 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.054, whole genome shotgun sequence.
ACCESSION   DAEDTT010000054 DAEDTT010000000
VERSION     DAEDTT010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11732
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.054"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            70..1413
                     /locus_tag="KLC54_001054"
     CDS             70..1413
                     /locus_tag="KLC54_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HBD9177428.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLTMRFALEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGLIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKMVVVASIFLIFSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FSTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGTLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            1424..2074
                     /locus_tag="KLC54_001055"
     CDS             1424..2074
                     /locus_tag="KLC54_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HBD9177429.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(2071..2742)
                     /locus_tag="KLC54_001056"
     CDS             complement(2071..2742)
                     /locus_tag="KLC54_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate dehydratase"
                     /protein_id="HBD9177430.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGYKANMEYKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTSNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQNYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(2748..3374)
                     /gene="upp"
                     /locus_tag="KLC54_001057"
     CDS             complement(2748..3374)
                     /gene="upp"
                     /locus_tag="KLC54_001057"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HBD9177431.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEA
                     SKDFSLKEIEISTPIQKTTVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKFPKDAKKRTAIVIDPMFATGGTAIEACNFLKSQGVKKIKFISIL
                     AAPQGLKKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(3371..4606)
                     /locus_tag="KLC54_001058"
     CDS             complement(3371..4606)
                     /locus_tag="KLC54_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HBD9177432.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSYDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEINVHSIEEIVNFCKALAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKEVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDAIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFDEKAYFESLK"
     gene            complement(4608..5999)
                     /locus_tag="KLC54_001059"
     CDS             complement(4608..5999)
                     /locus_tag="KLC54_001059"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HBD9177433.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNAKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFVNENNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLGVDEC
                     KKRIDNFLKVRGK"
     gene            6064..6879
                     /gene="salC"
                     /locus_tag="KLC54_001060"
     CDS             6064..6879
                     /gene="salC"
                     /locus_tag="KLC54_001060"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HBD9177434.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSK
                     NQSYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(6917..8248)
                     /locus_tag="KLC54_001061"
     CDS             complement(6917..8248)
                     /locus_tag="KLC54_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HBD9177435.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(8250..8705)
                     /gene="accB"
                     /locus_tag="KLC54_001062"
     CDS             complement(8250..8705)
                     /gene="accB"
                     /locus_tag="KLC54_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HBD9177436.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSAKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            8853..9413
                     /locus_tag="KLC54_001063"
     CDS             8853..9413
                     /locus_tag="KLC54_001063"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HBD9177437.1"
                     /translation="MGLKADNWIRKMALERKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDDVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            9462..10466
                     /gene="pseB"
                     /locus_tag="KLC54_001064"
     CDS             9462..10466
                     /gene="pseB"
                     /locus_tag="KLC54_001064"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HBD9177438.1"
                     /translation="MFNGKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDIRDNERLSAAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPINLYGATKLASDKLFVAANNIAGNKQTRF
                     SVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPHLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKFVDKDNDFSINALGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTEGF
                     "
     gene            10468..11598
                     /gene="pseC"
                     /locus_tag="KLC54_001065"
     CDS             10468..11598
                     /gene="pseC"
                     /locus_tag="KLC54_001065"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HBD9177439.1"
                     /translation="MLTYSHQNIDQSDIDTLTKALKDEILTGGKKVNEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALGVKEKIVLTTPLTFAATANAALMAGAKVEFIDIKNDG
                     NIDEKKLEARLLKDSENIGAISVVDFAGNSVEMDEISNLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELIAKIKLLRSHGIIKKRLWDS
                     DMVELGYNYRLSDVACALGINQLKKLDHNLEKREKIASFYDKEFEKNPYFSTIKIKNY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGIGVQVHYKPTYEFSFYKKLLGEIKLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCG"
     gene            11591..>11732
                     /locus_tag="KLC54_001066"
     CDS             11591..>11732
                     /locus_tag="KLC54_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HBD9177440.1"
                     /translation="MDKLDFRNQDFSQTGKAMYELACELFPIPRSITGQGFRASLEIL
                     NKT"
BASE COUNT         3901 a         2047 c         1790 g         3994 t
ORIGIN      
        1 aattttattt cccttaaagt tttaataaga tagaataccc gctttagatc attatcaaat
       61 ggaaattttt tgaaacaatt tggactagat agacgaactt ttaaaatttt actagctggt
      121 tatattatta ttgcattgtt tggggcttta ttgctacatt caagctgggc acatacaact
      181 cctattgatt ttttggatgc cttttttaca agcacatctg ctgttagtat gacaggatta
      241 gtagttaaga acactgcggt tgattttacc ttagcagggc aaattattat cttagctttg
      301 gtacaaattg gaggcttggg atatatgggt ataggtttat ttgtttatat actcatacgc
      361 aaaaaagttg gttttagtgc aagaaattta ctaaaagagt ctttatttta tccatcaatg
      421 gatggtttat ttaaattttt taaaaaagtt ttgctgttca tttttactat agaattgata
      481 ggtgctatac ttctcaccat gcgttttgct cttgaaatga attttaagaa agctttatgg
      541 tttggaattt ttcattctat tagtgctttt aataattctg gatttactat atttgaacat
      601 ggacttatag cttataaaca tgatatagca attaatctta ttatcacttc tttgattatt
      661 attggagggc ttggatattt tgttttggtt gaattatact tttttcaaag aaaaaaattg
      721 caaaatttaa gcctacatac aaaaatggtt gttgttgcaa gtatttttct tattttctct
      781 tcaacgctta ttatttttgc ttttgaatac tcaaatcctc aaactatagg acatttttca
      841 ttttttgata aaattttaag ctcatatttt atcgctatta attaccgcac agcaggattt
      901 agcaccttag atatgggaca tttgcatgat gcaagcttat tttttggatc attgtttatg
      961 gttattggtg gtgcaccagg tggaacagct gggggtatga aagtaacaac tgtaatggtt
     1021 ttattgctct atgcttattg gagtatccgc gatggaagag ttagaatttt tggacatgaa
     1081 attccaagag aaactatatc taaagctttt attatagctg taggttcagc tgtttatata
     1141 gtaatagctg ttattttgct ttccttgcta gagtcaaaat ttgattttat agccttgctt
     1201 tttgaaactt cttcggcttt tgcaaccgta ggaatttcag tgggaaatgg tggaacttta
     1261 tctttatgtg ctttatttag tgatcctagt aaggtgatta tcatcattat gatgctaagt
     1321 ggcaggatag gtgtttttgc ttttttactc tcggtattca aacaagacaa agctattcat
     1381 ttaaaattcc ctgaaggaaa ggttaattta taaaggtaaa atcgtgaaaa atcttaatta
     1441 tggaatcata ggacttggaa aatttggctc agttgtagca gatgaactca ttgctggagg
     1501 tcacactgtt atcgttgcag ataaagatga ggaagcttta aaaagtatac aaaatcctcc
     1561 aagctatgct tatattttag attctacaaa tatttcagcc ctaaaagaag caggctttca
     1621 tgatgttgaa gttgttattg ttagcatagg agaaaatgtt gaaaaatcaa tccttactct
     1681 tatggcgctt aaagatatag gtgttaaaaa tatcattgct aaagcaacct ctaatatcca
     1741 tggtcaaatt ctttctaagt taggcgcaac aaaggtcatt tatcctgaaa aagaaagcgc
     1801 taaaagacta gtaaaagaat ttttaaccaa agatgctgat tatgaagttt ttgatctttc
     1861 agcaaatact atacgagcta ttaagatcaa tatagatgaa aaattagcag gaaattcttt
     1921 aaaacatgta gcacaaaata tgaaagtaat ttcttataaa aaattaaata gcgactggga
     1981 aatactacct gatttagaaa ccacgacagt ttatagtgga gatgttgtaa tactccttgg
     2041 aacagttaaa gagcttagag aatttgaaca ctaagcaaga tttaaagcct tgcaagcctt
     2101 tacaaaacgc tttaaggctg ttttttcttt ggtagaaatt ttatgatata taacttcatc
     2161 taaataatat ctaacatctt ttatatctaa atctcttgtt ttggcataat tttgcagtat
     2221 ataataagga attttaatct ttgtttttgg aaattttttc aaaatttgtt tatataaagc
     2281 ttttttttgc acacaagaaa atctagcaaa aacaaaaggc aatcctgttt tttcgtgcca
     2341 ttttgcacat aaatcgatat atttagaagg atcttttaga taaagcttta aagccttatc
     2401 acctataatt acttttccat cttgttttaa tactttagct aaagcgtttg aagttgctga
     2461 acttggatct ttggcatttg atgtattttt ttctactaaa acacttaaaa ctcttttatt
     2521 agcacaaata cccaaatcta aatttttata tttttttcta gcactttcta tgcttgaaat
     2581 gatagctgca tcaattcttc tataaaataa atctttattt agcttacttg gaactccttt
     2641 tttatactcc atatttgctt tataaccatt aggcaaggga tatttcttaa gatatatatg
     2701 taaaggtaaa agattaatat aatcaatttt tccaaaaatc atctctttta aagagtgtta
     2761 aacactctat ctcctgcatc tccaagccct gggataatat aacctttttc atttaaacct
     2821 tcatcaatac aagccacaaa aacttctaca tcatcatgca tttggctaaa ttttttcaaa
     2881 ccttgtggag cagcaagtat ggatataaat tttatttttt taactccttg gctttttaaa
     2941 aaattacaag cctctatagc agtcccacct gtagcaaaca taggatctat gacaatagcg
     3001 gtgcgttttt ttgcatcttt gggaaatttt tgaaaataaa aatccgcctt taaagtttct
     3061 tcatttctca caaaccccaa aaacccaaca cttgcatcag gaatcatctt aaaaacactt
     3121 tcaagcattc ctaatgcagc tcttaaaata ggacaaatca taattttttc atcaagtttt
     3181 tttactgtag ttttttgtat aggtgttgaa atttcaattt cttttaaaga aaaatcttta
     3241 ctcgcttcaa aaagcaaaaa agatgaaatt tcatcgatta acatacgaaa ttgaaagggc
     3301 tttgtctctt tagcccttaa aattcctaat ttatgttcga tcaatggatg attgatacaa
     3361 tgaatatttt tcattttaag ctttcaaaat aagctttctc atcaaaattt ttcaccttag
     3421 ctacaccatc ttttaccgca gctgctgcta cagctgtact tactgcagct tttactcttt
     3481 catcaaaagg ttttggtata acataatctc ttccaaattc taaagtgctt aaattataag
     3541 cttttttaac cgcatcgctt acaggaagtt ttgcaagatc tgctaatgct ttagcagccg
     3601 ctactttcat attttcagtg attttacttg cacgcacatc taaagcccca cggaaaataa
     3661 aaggaaaacc taaaacatta ttgatttgat ttggataatc acttcttcct gttcctacaa
     3721 tcgcatcttt tctaagtcta gccacatctt caggcatcac ttcagggata ggatttgcca
     3781 aagcaaaaat cacaggatct tttgccatgc ttaaaaccat ttcatcatca agaatttttg
     3841 gtgcactaag tcctaggaaa acatcagctc cttttaaaac ttcttttaaa gtcttttcct
     3901 tagaatcaac agcaaattca agtttttgag gagttaaatc atttctatct ttagaaatca
     3961 ctcctttact atctactaaa ataatatttt caacccctaa atttctatac atcttagcac
     4021 ttgctatacc tgcggcacct gcgccactta caaccacctt aatgtcttta aattttttac
     4081 cacttatctc catagcattc ataagccctg cagttgaaat aatagctgtt ccgtgctgat
     4141 catcatgcat tacaggaatt cctaaatctt gcaaagctgc ttcgatttca aaacattttg
     4201 gagcagctat atcttctaaa tttatcccgc ccacagtcgg agccaaagcc ttgcaaaaat
     4261 ttacaatctc ttctatacta tgaacattaa tttctatatc ataagcattt acatttgcaa
     4321 attttttaaa caaacaagcc ttaccttcca taacaggttt tgaagcctgt gctcctatgt
     4381 ttccaagtcc taaaacagca gaaccatcgc taactatagc taccaaatta gctttatttg
     4441 tataagtata agcaagctca ttatctttag cgatttcaag gcaaggttct gcaactcctg
     4501 ggctatacgc caaagataga tcataacttg tagccattgg cttacttggc acaatatcaa
     4561 ttttcccacc taaatggtat tttaaagctt cttcttttaa attcatttta ttttcctcta
     4621 acttttaaaa aattgtctat tcttttttta cactcatcaa cccctaaaaa ttctaatact
     4681 tcaaaaatac taggacttac cgcactccct gttaaagcta tgcgtatagg ctgagccaaa
     4741 tcttttaact ttgcttcttt tttttctaaa aaatcatttg taaaatcttc aaaatcttta
     4801 cctgtttttt gatctttaag tgtattggca aatgcttgga gcaattctaa attattttcg
     4861 ttaacaaatt tttgcactgc attttcatca taattttgcg gtgcattaac tatgcttttt
     4921 gcaccattga taatatcatg caaggttttt gcacgctctc ttaataaatc aagtaaaaat
     4981 cctgcctttt cataaacaga taaatcaaag ccaagatctt taagctgacg gttaatctct
     5041 tcaaaaggca aagttttaat ataatgagca ttcaaccatt caagcttttt agcattataa
     5101 caagatgcgc ttttattgat atgataagga tcaaaaagtt ttttcaaatc ttctagtgaa
     5161 aaaacctcgt catcgccatg actccaacct aaacgcacaa gaaaattaag caaagcttga
     5221 ggtaaaattc ccatttcttt gtattccata acatcagttg ccccatgtct ttttgaaagc
     5281 tttttaccat cttctccatg tatcatagcc acatgaaaaa atttaggaat tttaaaaccc
     5341 aatgcttcat aaagcacaat ttgtttagga gtatttgaaa gatgatcatc cccacgaatc
     5401 acatcgctta cccccattaa agcatcgtca ataacaacag taaaattata agttggggtt
     5461 ccatcacttc ttgcaatgat aaaatcatcc attatatctt ctgctttaaa tctcacctcg
     5521 cctttaaccc catcttcaaa aacaatctcg ccactttgag gcgctttaat acgcacaaca
     5581 ggttctatac cctgaggtgg cgtgcctgta aattctctat atcttccatc atatcttggg
     5641 cgctctttgg cggcttcttg cttggcacgc aattcttcta attcttcttt actcatataa
     5701 caataatacg ctttaccttc atctaaaagc tttttaacat attctttata aagatcaaaa
     5761 cgctctgatt ggtaagttac ttctccatca tgttctaaac cacaccattt aaaagcttcg
     5821 ataattgctt tagtagcttc tttggaattt ctttttaaat ccgtatcttc aatgcgaagt
     5881 aaaaaatttc caccattttt tctagcgtat aaataattat aaagagctgt tctaagtcca
     5941 cctatgtgca aataccctgt tgggcttgga gcaaaacgcg ttgtaagttt ttcgtgcatt
     6001 ttttgccttt tcttaaattt ttattgatat aatgcgatat ttatacttaa ataaaggttt
     6061 gaaatgaaaa aaattttatt aagttttgca ttttttgcaa gtttggctag tgcaaatacc
     6121 attaatgcta tagctgtagt tgtggacaaa gagcctatca caacttatga tatagatcaa
     6181 actatgaaag cacttaaaat tgatagaaat aaagctttag gcgtactcat caatgaaaaa
     6241 atggaaattt cacaaatgaa acaactgggt attgtagtca atgatctaga gcttgatgat
     6301 gctataaata aaatgcttgc tcaaaacaaa accactttaa atgctttcaa agcaaattta
     6361 aaatccaaaa atcaaagcta tgaacaattt cgtacaaatt ttaaaaaaga tttagaaaaa
     6421 agaaagcttt atgaaaaaat cgcaagtatg gcaaaaactg actttagtga tgatggagca
     6481 aaaaaatttt tcgaacaaaa taaagataaa ttcacttttt atacacaaat taatgcaaat
     6541 atttatctat caaacaatcc tcaaacttta gaaaatatca aaaatacaaa aaaaacaatc
     6601 cttaaaccac aaaatgcatc tttaaacaca agcaatgccg atccaagact tttaggactt
     6661 ttatcgcaaa ttcctgttgg aggcttttcc cctgttttaa atggaaaaaa tggctatgaa
     6721 ctctatgaag ttaaaagcaa agatgggaca caaactcctg aatacgaaca agttaaaaat
     6781 gaagttttaa acgcttacgt aagtgaacaa agacaaaatt tcatacagga ttattttgat
     6841 aaactccgct ctaaaatcaa tatagaatat ttaagataaa aattacaatt aaaatttccc
     6901 ttataatagg gaaattttaa tgtcttgcaa gataatttgt atcgtaatta ttattaataa
     6961 aatcaggatt ttccatcatg gaaagatgaa aatctttagt cgtttttatc ccacttataa
     7021 gcaactcatc taaagctact ttcatctttg caatagcttt attacgatct tctgcccaaa
     7081 ctacaagttt gcctatcata gaatcataat aaggaggcac gctatagtct tgataacaat
     7141 gactttccat tcttacattg cgtcctgcgg gtggaatgta tttagtaatc ttacctggac
     7201 ttggcaagaa ggttttagaa tcttcagctg tgattctaca ttctatagaa tgcccattaa
     7261 gcttaatact ttcttgagat ggtaaggcat aaccttctgc tactttaatc atttgttcta
     7321 tgatatcaat cccacttacc atttcactta cacagtgttc aacttgcaaa cgcgtattca
     7381 tttctataaa ataaaagtct aaatttttat ctactaaaaa ctcaaaagtt cccgcacctt
     7441 catatcctat agctttagct gccttaatag cagtttcatg aagcctagtg cgtgtttttt
     7501 catctagtaa aattgcaggg gattcttcta taagtttttg atggcgtctt tgcatagaac
     7561 aatctctttc gcccacatga atcacattac caaaactatc tcctataacc tgcacttcta
     7621 tatggcgtgg attttgtatg tatttttcca tatacatagt accatcacca aaagctgtca
     7681 tagcctcact ttcagctgac cagtacgctt tttcaagatc tttttcattt tcaaccacac
     7741 gcataccacg accgccacca cctgcagctg cttttaaaat cacaggatag cctatttctt
     7801 tagcaagttt tttagccgct tcagctcctg ccaaagcccc atcgcttcct gggatcacag
     7861 gtacgcctgc tctttgcata acttgttttg cttttgattt atcactcatt aaattcatag
     7921 cttctacaga aggacctata aatttgatgt tatgtttagc acaaatttca acaaaatttt
     7981 gattttcgct taaaaatcca tatcctggaa aaatcgcatc tgcttcagca atttcagctg
     8041 ctgtgataat agctgggata tttaaataac tttcagaact tcttgctttg cctatgcaaa
     8101 tgcttgcatc agcgtatttt aaatacaaag catctttatc tgcttcagaa tacacacaaa
     8161 ttgctttttt acccatttct ttaatcgttc ttaaagcacg cagtgctatt tctccacgat
     8221 tagcaattaa tatgctttta atttccattt tataatttct ccaccgcaaa taaaggcatt
     8281 ccaaattcta caggctgacc atcagcaact aaaatttcag cgatcctaca atcaaattct
     8341 gcttcaattt cattcatgat tttcatcgct tcgataatag ctatagtatc gcctttttta
     8401 actgtactac ctacttttac aaaaggtgct gcacctgggc ttggagcttg atagaaagtt
     8461 cctaccatag ggctgtttat acttggtttg ttcgattttg cgctttgact aggttgagct
     8521 tcatttacaa cgcttacatt gataggttgt ggagctggaa ctggaggaca aacaggagct
     8581 ggaacatcgc agcacatatc tctttcaagt tctatttcaa aaccatcttg ttctttgatc
     8641 ttaattttac taatatttgc ttcagcaaaa aggtttacta actctttaat ttcttctttt
     8701 gtcataaaat tctcctacaa aatttaagaa cttaatcttg tattatataa aaaaacttga
     8761 aatttaactt taaaaaagaa aaaaatcata aaaaatatag attttttagg ttataatcct
     8821 tataaaaaat tactaatatt aaaaggttaa aaatgggctt aaaagcggat aattggataa
     8881 gaaaaatggc attagaacgc aagatgatcg aaccattttg cgaagcaaat ataggaaaag
     8941 gtgtggtaag ctatgggctt tcaagctatg gttatgatat acgcgtaggg cgtgagttta
     9001 aaatttttac caatgttaat tcaactgtag tggatccaaa aaatttcgta gaagaaaatg
     9061 tagtagattt tgaaggtgat gtatgtatag ttcctgcaaa ttcttttgcc ctagctagaa
     9121 ctatagagta ttttaaaatg cctgatgatg ttttagctat ttgtcttggc aaaagcactt
     9181 atgcaagatg tggtatcatc gtcaatgtta ctccttttga gccaggtttt gaaggacata
     9241 tcactataga aatttcaaat actacgcctt tacctgcaaa aatttatgcc aatgaaggca
     9301 tagcgcaagt gttgttttta caaggcgatg aaaaatgcga caccacttat aaagataaaa
     9361 aaggcaagta tcaagcccaa actggcataa ccttgccaag aattttaaaa taggaacact
     9421 tgttgcttta atttaaaaaa acttaagcaa aggaaggcaa aatgtttaat ggaaaaaata
     9481 tcttaatcac aggcggaaca ggctcttttg gaaaaaccta tactaaggtt ttactagaaa
     9541 actataaacc taataaaatc atcatttatt ctcgtgacga actcaaacaa tttgaaatgg
     9601 caagcgtttt taatgctcct tgtatgcgtt attttatagg agatataaga gataatgagc
     9661 gtttaagtgc tgctatgcgt gatgtggatt ttgttataca tgctgctgcg atgaagcatg
     9721 tgcctattgc tgaatataac cctatggaat gtataaaaac aaacatccac ggtgcgcaaa
     9781 atgtcatcga cgcttgtttt gaaaatgggg ttaaaaaatg tatcgctctt agcacagata
     9841 aggcttgcaa tcctataaat ttatacggcg caaccaaact tgcaagcgac aagctttttg
     9901 tcgctgcaaa caatatagca ggtaacaaac aaacacgctt tagtgttaca agatatggca
     9961 atgttgtagg ttcaagagga tcagtggtgc ctttctttaa aaaactcatc agcgaaggag
    10021 ctaaagaact tcctatcacc gatacaagaa tgactcgttt ttggatcagc cttgaagatg
    10081 gagtaaaatt tgtactgagt aattttgaaa gaatgcacgg aggagaaatc tttatcccta
    10141 aaattccttc gatgaaaatc accgatctag cccatgcttt agctcctcat ttaagccata
    10201 aaatcatagg tataagagca ggagaaaaac tacatgaaat catgatttca agcgatgata
    10261 gtcatttaac ctatgaattt gaaaactact atgctataag ccctagcatt aaatttgtag
    10321 ataaagataa tgactttagt atcaatgccc taggcgaaaa aggacaaaaa gtaaaagatg
    10381 gtttttctta tagttcggat aataatcctt tatgggcaag cgaaaaagaa cttttagaaa
    10441 tcatcaatca caccgaaggt ttttaaaatg cttacctatt ctcatcaaaa catcgatcaa
    10501 agcgatatag atacgcttac aaaagcttta aaagatgaaa ttttaacagg gggtaaaaaa
    10561 gtaaatgaat ttgaagaagc cctttgtgaa tatgtgggcg taaaacacgc ttgtgtatta
    10621 aactcagcca cttcagccct tcatcttgcc tacacagcac taggcgtcaa agaaaaaatc
    10681 gttttaacta ctcctttaac cttcgctgct acagctaatg cggccttaat ggctggagct
    10741 aaggtagagt ttatcgacat taaaaacgat ggcaatatcg atgaaaaaaa actagaagca
    10801 agacttttaa aagatagtga aaatatagga gctattagcg tagtggattt tgcgggcaat
    10861 agcgttgaaa tggatgaaat ttcaaacctt gctaaaaaat ataatatccc tttaatcgat
    10921 gatgcaagtc atgctttggg tgctttgtat aaaagtgaaa aagtaggaaa aaaagccgat
    10981 ctttctatct tttcttttca ccctgttaaa cctattacca cttttgaagg cggagctgtg
    11041 gtgagtgaca atgaagagct tatcgctaaa atcaagcttt taagaagcca tggtatcatt
    11101 aaaaaaaggc tttgggatag cgatatggta gaacttggct ataattaccg cttaagtgat
    11161 gttgcttgtg ctttagggat aaaccagctt aaaaaactcg atcacaatct tgaaaaaaga
    11221 gaaaaaatcg caagttttta tgataaagaa tttgaaaaaa atccttattt ctccacgata
    11281 aaaatcaaaa actataaaaa aagctcgaga catttatatc ctattttgct ttttcctgaa
    11341 ttttattgtc aaaaagaaga actttttgaa agcttacttc atgcaggaat tggcgtacag
    11401 gtgcattata aaccaactta tgagtttagt ttttataaaa aactcttagg agaaataaaa
    11461 ctccaaaatg cggataattt ttacaaagcc gagcttagca taccttgtca tcaagaaatg
    11521 aatctaaaag atgcaaaatt tgtaaaagat actttattta gcattcttga aaaagttaaa
    11581 aagggatatt gtggataagc tagactttag aaatcaagat tttagccaaa ctggaaaggc
    11641 tatgtatgaa ctagcttgtg aactttttcc tatccctaga agcatcacag ggcaaggttt
    11701 tagagctagt ttagaaattt taaataaaac tc
//
LOCUS       DAEDTT010000055        10706 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.055, whole genome shotgun sequence.
ACCESSION   DAEDTT010000055 DAEDTT010000000
VERSION     DAEDTT010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10706)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10706)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10706
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.055"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            82..690
                     /gene="plsY"
                     /locus_tag="KLC54_001067"
     CDS             82..690
                     /gene="plsY"
                     /locus_tag="KLC54_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HBD9177441.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLILKFLHYDQALLWSVAVLAIFGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVISS
                     FIFNYDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            675..992
                     /locus_tag="KLC54_001068"
     CDS             675..992
                     /locus_tag="KLC54_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HBD9177442.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERRKKQKIIIKLKAKANEFLNYAE
                     VITKIKTWYKKEEFYTLEESLDFVSLNLKKDFPNLTNLNIKIFKPHIIKNATVGVKLK
                     KKY"
     gene            1071..1742
                     /gene="hsrA"
                     /locus_tag="KLC54_001069"
     CDS             1071..1742
                     /gene="hsrA"
                     /locus_tag="KLC54_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HBD9177443.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            1855..2100
                     /locus_tag="KLC54_001070"
     CDS             1855..2100
                     /locus_tag="KLC54_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HBD9177444.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            2100..3560
                     /locus_tag="KLC54_001071"
     CDS             2100..3560
                     /locus_tag="KLC54_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HBD9177445.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTCEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDNYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(3557..4354)
                     /locus_tag="KLC54_001072"
     CDS             complement(3557..4354)
                     /locus_tag="KLC54_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177446.1"
                     /translation="MRLLVLFFLILPLYSVELISFNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESVPTTTANNSQELMPKPKSTSLEGYDYTNYILVMLIL
                     VILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVVFDHANKRYTMIIGNSNV
                     LLESVEIPEEQIIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
     gene            complement(4355..4663)
                     /gene="fliN"
                     /locus_tag="KLC54_001073"
     CDS             complement(4355..4663)
                     /gene="fliN"
                     /locus_tag="KLC54_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HBD9177447.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(4663..5085)
                     /locus_tag="KLC54_001074"
     CDS             complement(4663..5085)
                     /locus_tag="KLC54_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HBD9177448.1"
                     /translation="MLKILEYSITHFCEHILRLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
     gene            complement(5156..5905)
                     /locus_tag="KLC54_001075"
     CDS             complement(5156..5905)
                     /locus_tag="KLC54_001075"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HBD9177449.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIEEIFKK"
     gene            complement(5898..7076)
                     /gene="trpB"
                     /locus_tag="KLC54_001076"
     CDS             complement(5898..7076)
                     /gene="trpB"
                     /locus_tag="KLC54_001076"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HBD9177450.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            complement(7073..7672)
                     /locus_tag="KLC54_001077"
     CDS             complement(7073..7672)
                     /locus_tag="KLC54_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HBD9177451.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGFIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFILAGGIGLDN
                     VHKAVQTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            complement(7659..9260)
                     /gene="trpD"
                     /locus_tag="KLC54_001078"
     CDS             complement(7659..9260)
                     /gene="trpD"
                     /locus_tag="KLC54_001078"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HBD9177452.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDEISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPLNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKSQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQVAALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALSITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEIRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            complement(9257..10507)
                     /locus_tag="KLC54_001079"
     CDS             complement(9257..10507)
                     /locus_tag="KLC54_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HBD9177453.1"
                     /translation="MFVKNVNFYYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELS
                     FSEFKAKYYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKA
                     YLIYEKNSKMFFKFGASKYFEYLKDDIEPIKTKQKNDFEILNSLEDEKNDFLKMCEKA
                     KEYLLSGDIFQVVLSKQLCIKHQVNAFDYYESLSTLNPSAYMFYFPSKYGVVLGSSPE
                     FLLKIKKREIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKF
                     GTQTRVENLFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALE
                     IISELEDCDRGVYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQK
                     EYAEICAKRRALLVAFENLKKENQ"
BASE COUNT         3809 a         1829 c         1296 g         3772 t
ORIGIN      
        1 tattttttgt ttatttattt tcataagata taatttttag ttataaatct taaaatttta
       61 agatgatttg aaaaggatat tatggaaaat ttaataattt acgcttttat atatctttta
      121 ggttcaatcc cttttgggct aatcctagct aaattttttg ctaaaactga tatcaaaaaa
      181 gaaggttcaa aaagtatagg agcaaccaat gttttaagag tagtaaaaga aaaaaatccc
      241 aaactagcaa aaaaacttgc cattgctaca ataattttag attttgcaaa agcagctatt
      301 cctttactaa tcttgaaatt tcttcattat gatcaagctt tgctttggag cgtcgcagtt
      361 ttggctattt ttggacattg tttttcaatt tacttgttat ttgaaggagg gaaaggcata
      421 gcaacaggag caggcgctat gatagtttta cttccattgg aagtgcttac agcatttatt
      481 gtgtgggtag ttattggaaa aatttttaaa atatcttcgc tagcttcttt agcagcgtta
      541 cttgcttttg ttataagttc ttttatattt aattatgact tagaaattca tacacatgca
      601 cccgttttca ttatcgcttt tattatagta tataaacatc tacctaatat taaaagattg
      661 atttttaaag aagaatgcaa agtcatataa aaataaaatt tcactttaag tgtatcattg
      721 gtatattaga tttcgaaaga agaaaaaaac aaaaaattat tatcaagctt aaagctaaag
      781 caaatgaatt tttaaattat gcagaggtaa ttaccaaaat taaaacatgg tataaaaaag
      841 aagaatttta cacccttgaa gagtctttag actttgtaag cttaaattta aaaaaagatt
      901 ttcctaattt aaccaatctt aacataaaaa ttttcaaacc ccatataata aaaaatgcta
      961 cagttggggt taaattgaaa aaaaaatatt aatttttttt taaagatatc taaacattta
     1021 cttaagctat gatataattc tttaaatttt tcttaataag gatagaacaa atgagaattt
     1081 tagttataga agatgagatt agcctaaata aaacaattat agacaatctt aatgaatttg
     1141 gttatcaaac tgattcttct gaaaatttta aagatggaga atactttatc ggcattagac
     1201 attatgattt agttttagca aactggactt tacctgatgg agatggagcg gaacttgtta
     1261 acactattaa gcataaatct ccaagaactt cggttatgat tatgtcttca aaaacagaca
     1321 aagaaacaga aatcaaagct ttgaaagctg gagctgatga ttttgttaaa aaacctttag
     1381 attttgatat tctactcgca agaattgaag caagactaag acttggcgga accaatgtta
     1441 ttaaaattga agacttagtt attgatccag atgaggaaaa aattacttat aaaggtcaag
     1501 atatagaact taaaggaaaa ccttttgaag ttttaacgca cttagcaaga cattcggatc
     1561 aaattgtatc caaagaacaa cttttagatg ccatctggga agaacctgag ctagtaactc
     1621 caaatgttat cgaagtagct atcaatcaaa ttcgtcaaaa aatggataaa ccattaaata
     1681 tatctaccat agaaacagtt cgtcgtagag gataccgttt ctgcttccct aaaaaatctt
     1741 aacaattttg caccttcggt gcaaaaaatt tatctttatt tctattttta tattttattt
     1801 aagtttggtt attgtataaa ctaaaattat tttttaaatt tttgaaaggt tatgatgtct
     1861 cttttaatta caaaagactg cgtatgttgt gatgcttgca gagaagaatg tcctgatgaa
     1921 gctatttatg aaaatagtcc aatttatgta atagaccctg atctttgttc agagtgcgtt
     1981 aatgattttt cagagcctgc ctgtattgtt gcttgcccat atgaatgtat cattcctgat
     2041 cctgataatg tagaaactat agaagaatta aaactcaaac atagagatag agaattttaa
     2101 tggcaaaaaa aacagccgtt gttgatcttg gctcaaactc cattagaatg gtgatttttg
     2161 aaaaaacttc tagatatggt ttttatacaa cttgcgaata caaacgcaaa gtaagacttg
     2221 gagaaaatgc ttataataat ggcaaaattc tccaagaaga agccatgcaa agagccgaag
     2281 atgccttagc ttttttcaaa caatgcgctt taaagcataa gtgcaaaaaa atatttatag
     2341 taggcacatc agccttaaga gatgccccaa attcaaaaaa tttcattaaa agaatcaaag
     2401 ataatctgtc tttaaatata cgctgtatag atggaaaaag cgaaagttac ttaggtggtc
     2461 ttgcagctct aaatttatta agtcctttta aagatggaac cactttagac ataggtggtg
     2521 gttctagtga attgtgttta ataaaaaata atagaattat ttcttgcata tctcttgata
     2581 ttggcactgt taggctaaaa gaattgttct atgatactgg aaaaatggat tctttagaag
     2641 aatttataaa accaatttta gaacaaattc ctaaagaatt ttgcaatcaa aaccttattg
     2701 caataggtgg aagcttaaga gcaatatcta attccatcat gcaaaaaaat tcctatccac
     2761 tgaaaaattt acatgatttt cgctatatgc tagatgaaga aaaagggcat attttaaaaa
     2821 tttttaattc aaacttagac tctttaatca attttggcat aaaaaaggat cgttttgata
     2881 ccattaaaga gggtatattt atttttttaa agattgcgga aaaaataaaa gccaaacaag
     2941 ttatcacgag tggggttgga atcagagaag gagtttattt gcaagattta cttcgtccta
     3001 aaatcacttt tccaccaaat tttaatccta gtttaaaatg tttacaagat aaatttttac
     3061 aatcaaaaca aaaaaataaa actccacatt ttgctctgca aatttttaca acccttaaaa
     3121 atcttcataa acttaacgat aactataagc atactttact aaatgctgct aaattatgcc
     3181 atattggaga atatttaaat ttctattttg ctaatgaaca ctctgctcat tttgtactag
     3241 gtggattaaa ttatggattt tcacataaag aaaaagcttt aattgctagc attattaagc
     3301 ttaatggaaa aaaagttaac ccttataatc ttgaacccta taaacaactt ttacccaata
     3361 ttcataccat ttcatggctt aattttattt tgtgcctagc taaaacttta agcacaaatg
     3421 aagataagat tgattttgct tttgcaaaca atactcttta tatatatcaa gaaaacaaaa
     3481 ttcttaattt acccaaagat gagctcaaaa aaattgcaaa accagctacc atagcattag
     3541 caatcaatca aaaaatttaa gattttttac ctttttgacg ctgctctata agattttgaa
     3601 ttcttttttt attctcttca aaaaaagaat caaaattttt ctctgttttt tctgtatgtt
     3661 ttattatttg ttcctctgga atttcaacac tttctaaaag cacattggaa ttacctatta
     3721 tcattgtata acgtttatta gcgtgatcaa aaacaacaag ttgattattt ttatctaaaa
     3781 atctttggaa aatcatagta aaatctctag aaacattgtt atttttataa accatagtct
     3841 ttttaaacca ccaaagcact attaacaaaa taactaaaat cagcattact aagatataat
     3901 ttgtataatc atacccttct aaacttgtac tttttggttt aggcattaat tcttgagaat
     3961 tattcgcagt agttgtaggt acagattcga tatttgcttt tccttgctct atagctcgta
     4021 tccttactcc aaatttatca ttgatagagc taagttctaa attaatattt tgtttgtttt
     4081 gtagcataat ataggtatta ttatttttag aactaatact aattttatct acaagttgag
     4141 agttaagttc ttttaattca tctttagaat acgttaaatc actaaaagtt aaaagagtta
     4201 aatttttttc ttttttttga gaaatcttgc cattataggc attatcaaaa gaaagcatta
     4261 aatctactcg atcatttcta tcgtagatat taaaactaat cagctcaaca ctatataaag
     4321 gtaaaattaa aaaaaataat actagcaatc tcatttaaat ttctttttta aagtattgaa
     4381 gcacagtctt agaatccaaa atttcattaa ttcttatagc gagatttttt tcataaacca
     4441 taacctcgcc tttgccaaaa attcttttat tgatataaag ctcaacgctt tctccagcag
     4501 gcttttcaag atcaataacc gaacctactt caagttttaa aagctccgct acactcatat
     4561 ttgtagttcc aagctcgctt acaaaatcta ctgtaatatc taagatatct tcataagatt
     4621 gtaaaagccc atgatgaatg ttaaactcta tatcatcgct cattatttgc aatatcctat
     4681 tctaaaataa caattttcaa atttataagt taaagcttca tctagaacta tttcagaaaa
     4741 atcaactttt cctaaatatt ccggaattcc gagtttatac tcgtcatcac ccttggcatc
     4801 atttaacaaa tttttagcat aacctataat ctgattggca cattctttag ttaaatcgca
     4861 ccagtcatct tctttaaatt tttcatcatt aattaaaatt tctgcaattt tttttaaaaa
     4921 ttcttttgga aaaaataaat aaaaattaca ttctccttcg cttttgccca tgataggaat
     4981 actcgctcca taaagttcac cgcttatatc ttgagctgct tcaatgcgaa gtcttaagat
     5041 atgctcgcaa aaatgagtga tggaatactc aagaatcttt aacatagcta ccacctttat
     5101 aaaaaactta atttaaaatt atagtaaata taaaataaaa atatgtttta aaattttatt
     5161 ttttgaaaat ttcttcaata tctttcatta ttatatccaa atttccttgt ttaaaacact
     5221 ttactatgct agttcccaca atcactccat cagcaacttt tctcattctt tttacatctt
     5281 gattattttg aatgccaaag cctacaaaaa taggcaaatt tgtaaaagat ctgatttctt
     5341 ttactttatc ttgtaagatt gcttcttcga cacttttcgt acctgtaata cctatgcttg
     5401 ctaataaata aataaaacct ttagcatgtt ttactaactt tttaaccctt tctttagggg
     5461 ttgtaacact tacaagtgta attaaagcta tattatatct ttcacactct ttaattaaat
     5521 catcactttc ttcaaaactc aattcaggca caatcaaagc acaaatccct aaagattttg
     5581 cttttttcac aaatttttcc aagccataag aaaaaattaa attataataa accataaaaa
     5641 ccaaagcttt tttagttttt atcctagcta aaagctcaaa aacactatga atatccacgc
     5701 cttgatcaag agctattttt gccgcatctg caataatctc accatcggca ataggatcac
     5761 tataagcaac accaagttct aaaatatcaa tagggctttg atccaatctt tgcaaaaaag
     5821 cttcacttgt ttgaagattt ggataaccta aaaccgtata agccacattt gcattttctt
     5881 tataaaattt tctaaaatca accataaatc accccttttt tataatctct aatcatttgc
     5941 atatctttat ctcccctgcc tgaaagattt actactatca cgcttttctt ttttaaagtt
     6001 ggacaaagtt tttctaaaaa tgccaaagca tgcgaacttt caatcgctgc aataatacct
     6061 tcttctttac aaagtaattt taaagcctgc atacattctt catcacttat agcatgatat
     6121 tgcgctcttt tgctttcaaa taaaaaagca tgtaaaggac caattcctgg ataatcaagc
     6181 cctgcagaaa cactatgtac aggcaagata ttgcctaaat catcttgtaa aaccttggtt
     6241 ttcataccgt gaataatgcc tgtttttccc ttatttaaag tcgctgcatg ataaggcgta
     6301 tcaatgccaa gcccccctgc ttcaatacct ataagtttaa cattttcatc tttgataaaa
     6361 tcataaaaaa tcccagctgc attgcttcca cccccaacag ctgcgataat ataatctact
     6421 tttttattga gtttttgaag ttgcattttg cattcttttc ctataatact ttgaaaatgc
     6481 attaccattt taggataagg ataaggacct accgcacttc caaccacata aaaaatattt
     6541 ttaatatctc caacccaagc ttgaatagcc gcagtagtag cttcttttag agttttaagc
     6601 ccactttgta ctgcatgaat tttagcaccc aaaagctcca ttttataaac atttaaagcc
     6661 tgtctttgca catcggttgc ccccatataa atttcacatt caagtcctaa aagtgctgct
     6721 gcagtggctg ttgcaagccc gtgttgacct gctcctgttt ctgctatgat ttttttcttt
     6781 cccatttttt ttgctaaaag ggcttgagcg atggcattat tgattttatg tgctccggta
     6841 tgatttaaat cctcgcgttt taaataaatt tcatgctgat attttttgct taaatttcta
     6901 gcaaaataaa gtggagtagg acgccctaca taagttttta aaagctcgtt taattctttt
     6961 ttaaagagtt tatctttaga aaatttcaaa aaagcacctt ctagctcatt taaagcaaac
     7021 attgcacttt caggcaaaaa ctgcccacca aaatccccat aatacgcttt tttcattttt
     7081 tcaactcctt taaaatttgt tttattttgt tgatatcttt taagcctttt tcatcttcaa
     7141 gttttgaatt aagatctaaa attttagctc ccgtttgtac agccttatga acattatcca
     7201 aacctatgcc tccagctaat ataaaatctt tagtataaga acctaataaa gtccaatcaa
     7261 aacttattcc attaccgccc tttaaaattc ccttagcatc aaaaagtact aaattagcaa
     7321 aaatttcact ttttaaatct aaactatttt ccacactaat cacctgccaa acaaaaacat
     7381 tttgcacctt taaaatttca aattcttctt tggtaatagt gcgataaatt tgtatcccat
     7441 caagcttagc ttctttaata catcttaaaa tttgttccaa attttcatct acaaaaacac
     7501 cgacaacttt tttatctttt tcatgaaaaa ttgcacttaa atttcttgct tgttctaaac
     7561 tcactcttct tggactttta gcaaaaataa atccaaaaaa atcaatattt aaaaaagcta
     7621 aatctttggc atttttttca tctttaatac cacaaatttt aagctttagc ataagcttga
     7681 tactccttaa aatattctat aaccttacct gaataaatgg cttctaaaat catatcttta
     7741 gccactaaag gcgaacttgc tttattggct gtataaagtg caaacatagc atttaaaact
     7801 accaaatcaa attttgcccc ttgcattcta ccgcttaaaa tatcttttaa atctttagcg
     7861 ttgtcatatg cactagatcc tatgatttca ctatgaaaag ctcttttaaa accaaattgt
     7921 tcaggacaga tagaatactc taaaatttct ccttcacaaa gctcataaat tttactttca
     7981 tcgcaaatac taagctcatc cataccatca tttcctctta ccactaaagc ttttttgcgt
     8041 cctaaatttt ttaaaacctc tatcaaaagc ctatgcacag gtgcgtgata atttcccata
     8101 agttgatatt ttaactttaa attagggtgc aataaaggac ctaaaacatt aaaaaccgtt
     8161 cttactccaa gtcttgatct gatctcttta agttctccta ctaaaggatg aaaaaatgga
     8221 gcatgtaaaa aactaagccc ttgattattt agttgtttta aaactgattc taaagtattt
     8281 ggagtagtta tacttaaagc ttctaacaca tctgtacttc cactagaact tgaaatggca
     8341 cgatttccgt gtttggctac ttttactcct aaagctgcta aaataaaagc actagtcgta
     8401 gaaacattga tacttttaaa accatctcca cccgttccac aaatatcaat catctcactc
     8461 tcatcactaa aagtttgaga atatcttaaa atttgtctta caaaagcact taaagatttt
     8521 tcgtttaaag acttttcagt gattaaaatc aacaaagccg ccacttgcaa aatttcataa
     8581 tctttagaca taataatctt acaaatttgc tcaaaatcat cgctttgtaa aaaatgattt
     8641 tcactcattt tttgcaaata aaaacttaaa ggattttctt gtttttgtga tttttttata
     8701 tcttgtttta aaaaattaga aaaaagttgt aagccatatt cactaaaata gctttcagga
     8761 tgaaattgca caccataata aggtaaattt ttatgtccca aagccataat cacacccttt
     8821 tcatcaaggg ctaaaatttc aagctcatca ctaagctgtt taacctctaa agaatgataa
     8881 cgcatcacgc taaaatttaa aggtaaatta gaaaataatt cattttccct gcactgtttt
     8941 atcaaagaat tttttgcatg cataggctct tgcatcttaa ccactaaaga atcaaaagct
     9001 aaagctaaag cttgatgtcc taagcaaatg cccaaaacag ggatattaag ccttgcttta
     9061 aaaatttcaa gacaaatccc actttgactt ggatgctttg gaccaggact taaaataata
     9121 tgagtaggat ttaaattttt aatttcactc agagaaattt catcatttct tcttactaaa
     9181 atttcatcat tgctgagttg ctctaacatg cttttaacat taaaaacaaa agaatcataa
     9241 ttatcaatta aaagtatcat tgattttcct tttttaaatt ttcaaaagct accaaaagcg
     9301 ccctacgttt agcacaaatt tctgcatatt ctttttgact ctcactttgc aaaacaatac
     9361 ccgccccact tgccaaataa gccttatctt gagtaaaaaa agcgcaacga attaaaatcg
     9421 ctaaagttat gtcttcgtta aaatttaaaa atcctaccgc accaccataa actccacgat
     9481 cgcaatcctc aagctcacta atgatctcta aagctcttat tttaggagct ccgcttaaag
     9541 ttcccgctgg aaaaactgcc tcaatcacat cgaaaatact cgcatcttct ttcatattgg
     9601 catacacttc actcactatg tgcattacaa atttattttt aataatagaa aaaagatttt
     9661 ccactcttgt ttgagtgcca aatttagaag catcatttct tgctaaatct acaagcatct
     9721 tatgttcact aagttctttt tcatcactta aaagatcttt ttctaaagct aaaagatcac
     9781 agttattttc caaatttcta gttcctgcaa taggggctaa ataaatctct ctttttttaa
     9841 tttttaataa aaactctgga gaagaaccca aaacaacacc atatttgctt ggaaaataaa
     9901 acatataagc acttggattt aaagtactta aactctcata atagtcaaaa gcatttactt
     9961 gatgcttgat gcaaagttgc ttacttaaga ccacttgaaa aatatctcca cttaaaagat
    10021 attctttagc tttttcacac atttttaaaa aatcattttt ctcatcttct aaagagttta
    10081 aaatttcaaa atcatttttt tgtttcgttt ttattggctc aatatcatct tttaaatatt
    10141 caaaatattt tgaagcgcca aatttaaaaa acattttgct atttttctca taaatcaaat
    10201 aagctttagc attggcaaat aaaaataaag gaaaatcata atttttctta gaagaaagtg
    10261 gaattttttc aaacaaagat acaaaattcg cactaaaaac tccaaaaaat ccagcaaagt
    10321 cacaaatttt attcttgctt aaagcttcat aatattttgc cttaaactcg ctaaatgata
    10381 attcattagc atctaaataa tcacaatcaa tccctataat taccttagtc aaatcctctg
    10441 caaaataaga attttcaaat ttttcaagga tttgtctgta ataaaaattt acatttttaa
    10501 caaacataat aaaccttttt ttaaaaaata aattaaaata atattaaaga aaaaatttag
    10561 ataaaaagaa gtttagaaac gccaagagcg aagagtatgt gtaagtttta aaatcaaaga
    10621 attactaaaa aaatcatttt cactcatctt ttacctttct tataaaatat ttcaaaaatt
    10681 aagactttta tgaaaatttt taaagt
//
LOCUS       DAEDTT010000056        10374 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.056, whole genome shotgun sequence.
ACCESSION   DAEDTT010000056 DAEDTT010000000
VERSION     DAEDTT010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10374
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.056"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            289..1266
                     /locus_tag="KLC54_001080"
     CDS             289..1266
                     /locus_tag="KLC54_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HBD9177454.1"
                     /translation="MLKRLALLITLSSLMLYASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAQVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNTYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYQFRGDKILYVKIDSKGKMKILAEQ"
     gene            1267..2253
                     /locus_tag="KLC54_001081"
     CDS             1267..2253
                     /locus_tag="KLC54_001081"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HBD9177455.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAQEIEEFFENILILSHRPHGNENSRFIYALNDISQVKKY
                     KQDIKIHLKIDTGMHRNGICVENLEHAIDLIRSSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGKGELVLGNGKV
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            2256..2723
                     /locus_tag="KLC54_001082"
     CDS             2256..2723
                     /locus_tag="KLC54_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HBD9177456.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIIKPTVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFSNFVS"
     gene            2827..4293
                     /locus_tag="KLC54_001083"
     CDS             2827..4293
                     /locus_tag="KLC54_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HBD9177457.1"
                     /translation="MNLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHTKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIVLTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVVHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGESKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNTQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(4321..5049)
                     /locus_tag="KLC54_001084"
     CDS             complement(4321..5049)
                     /locus_tag="KLC54_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HBD9177458.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLEPADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKILLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(5042..5785)
                     /locus_tag="KLC54_001085"
     CDS             complement(5042..5785)
                     /locus_tag="KLC54_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HBD9177459.1"
                     /translation="MNQKNIRIFVFFVIIILWGYFSFPIEILKIQDPSGVVSYGYTEN
                     AKAYLKSYLITLLLTACAVIIGVIIGFSLAILRFSKFKTLNFIIDEYIDIIRGTPVIL
                     QLMIFAFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYK
                     TSMKEIILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPI
                     IFTGLVYYVSVKIFSYFAKKLELRMNKND"
     gene            5868..6047
                     /locus_tag="KLC54_001086"
     CDS             5868..6047
                     /locus_tag="KLC54_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177460.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNRQMMQKNKE
                     REERFKKYKKGEQNE"
     gene            6040..6609
                     /locus_tag="KLC54_001087"
     CDS             6040..6609
                     /locus_tag="KLC54_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HBD9177461.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRARELNPDLEVVIASLNS
                     ELLVKGANDISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(6639..7004)
                     /locus_tag="KLC54_001088"
     CDS             complement(6639..7004)
                     /locus_tag="KLC54_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HBD9177462.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKHFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            7127..8119
                     /gene="pheS"
                     /locus_tag="KLC54_001089"
     CDS             7127..8119
                     /gene="pheS"
                     /locus_tag="KLC54_001089"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HBD9177463.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            8116..>10374
                     /locus_tag="KLC54_001090"
     CDS             8116..>10374
                     /locus_tag="KLC54_001090"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HBD9177464.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMPNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRALNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLATALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIELKEEIQTNLLLSLRLAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSCKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLSIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIESIGDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNEEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     AVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYSITISF
                     SFRDINKTLEDNQ"
BASE COUNT         3629 a         1275 c         1795 g         3675 t
ORIGIN      
        1 atttaagtca caagttagag gttggcatgt atttaagcta aatacacttt ctttcttttt
       61 atcatataat gcataaaaag ctaaaaacaa aatgcctaaa aaagacattc ctataaaaaa
      121 atttcttatc attatagaca accttttaaa acaagccttt atgatttata aaaattatat
      181 cataaataag gccgcattgt taatataatt aatatttttt aagaaaaaaa atattataat
      241 cacaaacatt tttgacttaa aaaattttga aatacctaag gaaaaacatt gttaaaacga
      301 cttgctttat taattacact ttcttcattg atgttatatg cctcagatct tgttaaaatt
      361 tatcttaatc aagggttaga tgctgttggt gtagcgattg aaaaagaatt aactcaaaag
      421 gatttttggt taagtgaaat aggagataaa aatatttcac ttggatatta tgatgataat
      481 gttgctatcg tgcttacaaa taaaacagat aaaattctcc gtgtttattc ttatgaggac
      541 ggaaaaataa gaaaagattt tgaacaaaaa gaaataataa ctggattaat gggcgataaa
      601 aaaatagaag gagatttgaa aacgccagta ggtttttatg agttaggccg taagtttaat
      661 ccaggtgatc cttattatgg tccctttgct tttgccacaa cttatccaaa tttacttgat
      721 aaagtacaag gaaaaacagg tggtggtatt tggatccatg gctatccttt agatggttct
      781 agacttgatg aatttaaaac aagagggtgt attgctttat ttaataataa tttagagaaa
      841 tttgcacaag ttgtacaaga taaaaaagtt tttgttatga cagaagaaaa agaaaaaatt
      901 agagctaaaa aggatcaaat agctagttta ttggctgatc tttttacatg gaaactagct
      961 tggacaaata gtgacactaa tacctattta agtttttatg atgagcaaga atttaaacgt
     1021 tttgataaaa tgaaatttga acagtttgct tccatgaaaa aatctatttt ttctcgtaaa
     1081 gaagataaaa agattaaatt ttcagatatt aatatcagcc cttatccgaa tttagaaaat
     1141 gaaactatgt atagaatttc attttatgag gattattaca ctaaaaacta tcagtttaga
     1201 ggcgataaaa ttttatacgt taagatagat agtaaaggta aaatgaaaat tttagcagag
     1261 caataaatgt ctttaataaa aattgatcaa aaagcttatg aatataattt aagacatatt
     1321 gctaaaaaaa tagggagttt tcaaagatta atttgcgttt ttaaagataa tgcatatgga
     1381 catggagcta agcttttagc tccattagcc aaaaatttag gagtttcttt tgttgctgtt
     1441 aagagtgaag aagaagctca agaaatcgaa gaattttttg agaatatatt aatactatca
     1501 catcgtcctc atggtaatga aaattctcga tttatttatg ctttaaatga tatttcccaa
     1561 gtaaaaaaat acaagcaaga tataaaaata catctaaaaa tagatacagg catgcatcgc
     1621 aatggaattt gtgtagaaaa tttagaacat gctatagatc ttattcgaag tagtgattta
     1681 aaacttactg gaatgtttac acattttgct agtgcagatg aaatggatgg aagttttttt
     1741 gttcaaaaag aaaattttca aaaagctaaa aagatagtaa aaaaatattt ttcaaattta
     1801 ttatttcatt cgcataattc tgcagcatta tttagaggga aaattcccga agatgaatat
     1861 tgtagagttg ggcttgttca atttggatat ggggattcaa atttaaaaag agttttaagc
     1921 ttgtatgctc atagattaag tcaaaggatt ttgcaaaaag gacagagtat aggatatgga
     1981 ggcattttta ctgctgcaaa ggatatggaa gtagcaactt atgatttggg ttatgctgat
     2041 ggtcttttcc gttacaatgg aaaaggggag ttggtgcttg gaaatggaaa agtaatgctt
     2101 ggaaagatgt caatggatag tttttcttgt gaaaattctg gtgaggaaat ttgcgtgttt
     2161 aaagatgctg atatttgggc tgattttttt catactatta actatgaaat tttagtaaaa
     2221 ttaaatccta acattcaaag agttctagta taaatatgtt taatatagtt ttagttcacc
     2281 ctagaatacc gcaaaataca ggtagtatag gtagaatgtg ttttaatgct ggttttaaac
     2341 ttcatatcat taaaccaact gtttttgata tttctcaaaa ggctgttaga agggcagggc
     2401 ttgattactg ggataaatta gaacccatta tttgggagaa tcttgaagaa tttttgaatg
     2461 aaaatatgat ttataaaaat cgcttttttt tcgcaacaac caagagtcaa aaagcttatt
     2521 ttgatgcaga atttcagaaa aatgatttct tattctttgg aagtgagagt tatggcttac
     2581 ctatggaatt aatgcaatta aattgggaaa atgctataac tatacctatg aaatcttatg
     2641 gaagaagttt aaatttagct acaagcgttg gtataatctc ttatgaagct ttaagacaaa
     2701 attttagcaa ttttgtttct taaaagtttc aaatttacac aacaacttaa aacaaataaa
     2761 atcataaagt cctttttata aaaattatgt taaagtaaaa tttagattat tttttgagga
     2821 gtttggatga atttagatat tatgctagat tttgccaata aagcgtctga tattatagct
     2881 aataagattg tcccaaatac agacattatt atggtagttt tacttattgt ttgtgggctt
     2941 tattatagtt ttttaactcg ctttgttcag tttcgtatgt tgagttctgt atttaaaatt
     3001 cttacagaaa aaaacgaagg acacactaaa gaacatattt caccttttca ggcattgatg
     3061 atctcaactg cttctagagt tggtatagga aatatcgctg gaatttcttt ggcattggct
     3121 acaggtggag ctggtgcttt attttggatg tgggttatgg cattttttgg tggtgcttca
     3181 gcatttgctg aaagcacctt agctcaagtt tataaatcaa aagatgatac aggcgggttt
     3241 aaaggtggtc cagcttatta tataaaaaaa gccttaggct cacatttttt tggagctttt
     3301 tttgctttta ttcttattat tacttatgct tatggattta acggacttca aagtcaaaca
     3361 atgacttcgt cttttaaagt ttattatgat atgtttaatc caaatgctgc tgtagatttt
     3421 gcatcaagct cttggccaat gattattggt attgttttaa ctatttttgg tgcatggatg
     3481 tttttttctc accatactaa aataggtaaa attagttctt taattgttcc ttttatggct
     3541 ttagcttatg ttttacttgc tgtgattgct gttttaatga attttgataa aattccttct
     3601 gtggttcata tgattttaca aagtgctttt gattttaaag cgatttttgg tggttttgct
     3661 ggttctgctt tagttatagg gattaaaaga ggactttttt caaatgaagc gggtatgggc
     3721 tcggcaccta atgcagctgc agcagctttg acaagtcatc cagccaaaca aggtgttata
     3781 caagcctttt cagttttgat tgatgttgtt gtttgtacaa gttctggatt tttggttctt
     3841 ttttctatgg catatttagg acttggagaa agtaaaatcg atggtggaat gcctttagtt
     3901 caagaagcta tgcgtgagta ttatggtagc tttggaatcc attttattac tatagctatt
     3961 gttctttttg caataacttc tttaatagga aattattatt atgctcaagc taatgttaaa
     4021 tatttaacaa attccaaatt tgtaatgaat ttgtttagaa ttacagctgt ggctatgatt
     4081 tttataggct cgcaaatgaa tttaaaactt gcttggaatt tggctgattt gactatggct
     4141 ttcatggcaa cgacaaatat tatatcttta ttgcttttag gtggtatagt aaataaagtt
     4201 ttaaaagatt ttaatacgca acaaaaatct ggtatagatc ctaaatttaa cgctagcaaa
     4261 cttggaatta aaaacgctga atgttgggat taaaattcat aagccttaat ggcttatgaa
     4321 ttaatgattt aaaaccttgt ttaaaaattc tctcaatctt tcattactag gattttcaaa
     4381 tacttcttta gggcttgcat caacagcaat ttttccttta tccataaaaa atatacgatt
     4441 ggcaacattt ctagcaaagc ccatttcatg agttactaca agcatagtta aaccttcttt
     4501 tgcaacatct ttcataatgc ttagaacctc gcctatcatt tcaggatcta gagctgaagt
     4561 aggctcatca aataaaataa catcaggatt catcatcaag cttctagcaa tagctatgcg
     4621 ttgtttttgt ccgccagaga gcttatgggg cattatattt tctttgtctg ctaaacccac
     4681 cttagcaaga agtatttttg ctttttttat ggcttcttct tgacttaaaa ttcctgtttt
     4741 aatgggtgtt aaacataaat tttccataac atttttatta gcaaaaagat taaaatgctg
     4801 aaataccatg ctaacttttt gcctgatctt attaatatca atttctttat caagtatgtt
     4861 ttgcttattg attaaaattt ccccactatc agctggttct aagcgattga tgcagcgtaa
     4921 aaatgtactt tttcctcctc cacttggacc tatgatagct attacatcgc cttttgagat
     4981 tgtagtgtta atatttttta aaacttctaa ttctccatat tttttttgta aatttttaac
     5041 ttcaatcatt tttattcatc ctaagttcaa gtttttttgc aaaatagcta aaaattttta
     5101 cacttacgta ataaacaagt ccagtgaaaa taataggttt tggattgtaa agtacggctt
     5161 gcaagctttg actttgcatg gtaatatcaa taacactaat aaatcctaca acagaagttt
     5221 ccttaaataa agaaataaat tcattagcta atgcaggtag aatgttttta gtagcctgag
     5281 gaagaataat ttctttcatt gaagttttgt aatcaagtcc cattgctctt gcagcttcca
     5341 tttgtccttt atctacacta ttaatgccgc ttcttacaat ttctgctata taagccgagc
     5401 tattaagtcc tagtgcaaga atggctgcat aaaggttatc tataaaagta aaaattacaa
     5461 aagcaaaaat catcaattgt aaaattaccg gtgttcctcg tataatgtct atatattcat
     5521 ctataataaa attaagtgtt ttaaatttag agaagcgtaa aatagctaag ctaaaaccaa
     5581 taatcactcc gataataaca gcacaagcag ttaataaaag cgtaataaga tagcttttta
     5641 aataagcttt tgcattttct gtatagccat agcttacaac tccactagga tcttgaattt
     5701 ttaatatttc tatcgggaaa gaaaaatagc cccataaaat aataataaca aaaaaaacaa
     5761 aaattcttat atttttctga ttcaatttgt aaaccttttc agagaaatta tttaaaaaaa
     5821 gattttatag aaatatcttt gaattttctc taaagattta aaaaaatgtg ttagaatttc
     5881 ccaaaaataa ggttgtattt atggaaattt tagatttcat tctaatagtt atttttgtgt
     5941 ttttaatgat tgttttggtc ataggtttta atcgtcaaat gatgcaaaaa aacaaagaaa
     6001 gagaagaaag atttaaaaaa tataaaaaag gagaacaaaa tgagtaaaaa agtattaatt
     6061 ccattggctc aaggttttga ggaagctgaa tttataggaa ttgcggatgt tttaaaacga
     6121 gcaagagaat taaatccaga tttggaagtt gttatagctt cgttaaacag tgagttatta
     6181 gtaaaaggtg ctaacgacat tagtataaaa gcagattgtt ctatagagga tgttgatata
     6241 gaaaatttag atgccattgc tttggcgggt ggctttgaag gtatgatgaa tcttaagaat
     6301 tcaaatgtta ttttaaatat cattaaacaa cttcatagca aaaataaaat tgttgccgca
     6361 atctgtgctt ctcctatagt cttaaatgaa gcaggtgttt tagagggtga gtttgcttgc
     6421 tatcctagtt gtgaagttgg acttaatgga aatcgtgtta acaaggctgt agttgtaaat
     6481 aaaaatgtta taacttcagc aggtccagct acggcaattc tttttggttt agaactagct
     6541 aaaaagttat gcggtgatga aatttatcaa aaattatatg agggaatgtt gctacctttg
     6601 acaaaatagt ttaaatggta gtttttctac catttaaatt aaaataaagc ttgaggattt
     6661 tctttttttg ttttttcctt aggtagttca aaacctccaa gcatatgaaa atgcaaatga
     6721 aaaacttctt gtccactatt ttttccacag tttgttacca agcgatatcc acttttatct
     6781 acgcctaaaa gaacagctaa ttcttgtatg aaacttgtca ttttggccat aagttcagga
     6841 tcaaattctt gaaagtcttt aaagtgtttt ttagggatta taagtatatg tatgggtgct
     6901 ttgggtgcaa tatcatgaaa tgctagaaaa tcgtcacttt caagcacttt attgcatgga
     6961 agtttacctt caactatgag ttcaaaaatt gttttttctt gcattattta tcctttttta
     7021 ttgttggttt gatacaatta tatctttaaa gtttggtttt tatgctgaat ttaaaatagt
     7081 ttttaataga attagaactt gaaatatttt atttaaggta agaaaattgc aaaattttat
     7141 agaacagatt caaaaatgtg agaatttaaa tgatttggaa gccattagga tttccgttct
     7201 tggaaaaaaa ggtattttaa cagaaggctt tacaaagctt aaagagttag aagatgaggc
     7261 gaaaaaagaa tttgctgcta aactaaatgc acaaaaagaa atatttaatg aggcttattt
     7321 agccaaattt aaagatttgg aaaatcttgc tttagaagaa agaatgaaac aagatgcttt
     7381 aaattttaac tattttgatg aaagtattac aacaggtgcc ttgcatcctg ttatgagcac
     7441 catggataaa atcatagagt attttatagc tttgaatttt agcatagaaa aagggccttt
     7501 aatagaagat gactttcata attttgaagc gttaaattta cctaaatctc accctgcaag
     7561 agatatgcaa gatacctttt attttgatga taaaaggctt ttaagaacac aaacttcgcc
     7621 agtgcaaata cggacaatgc ttgcacaaaa acctcctatt aggatgatag cccctggtgc
     7681 tgtatttaga agagattttg atattacgca tactcctatg tttcatcaag ttgaaggcct
     7741 tgtggtggaa gaagggcaaa aggttagctt tgcaaattta aaaagtgtat tggaagattt
     7801 tttgcgttat atgtttggag atgtgaaagt tcgttttcgt ccaagttttt ttccatttac
     7861 agaaccttct gctgaagttg atatttcttg tgtattttgc aaaggaaagg gttgtagagt
     7921 ttgcaaacat acaggttggc ttgaagtttt aggatgtgga atagttgatc ccaatgttta
     7981 taattttgtt ggctatgaaa atgtaagtgg ttatgccttt ggattgggag tagaacgttt
     8041 tgcaatgctt ttgcatcaaa ttccagattt aagatcttta tttgaaggtg atttgagatt
     8101 attggagcag tttagatgat aattactaaa agttggttga atgattggtt agaacttgaa
     8161 gaaataagtt cggataaaat agctaaaact ttaaactcta taggtataga agttgatagg
     8221 gttggcgctt taaaagctcc agataaagtt gttgtaggct atgttaagga aaaaattaaa
     8281 catgaaaatt cagataaatt aagcatttgt caagttgata tcggaagtga aaccttgcaa
     8341 attgtctgcg gtgctgcgaa tgttgatgca ggacaatttg tagctgttgc aactaaaggt
     8401 gctatcatgc caaatggtat ggaaataaaa gaagcaaaat tacgaggagt ggattcttgt
     8461 ggtatgcttt gttctagttt agaactgggt tttgaaaaaa tcaatgaagg aattatgctt
     8521 ttagatgaga gcatagggaa attagaactt gggagagctt taaatactta tgaaattttt
     8581 aatgatgagc taatagaagt agaacttact cctaataggg gtgattgttt aagtatttat
     8641 ggtattgctc gtgatttggc tactgcttta aatttaaatt taaaagaacc aaaaccattc
     8701 aaagaaagtg aaaatgtttt aggtatcggt agaattttgc gcttagcagc tgagaaagaa
     8761 cttaatggac tttataatta tcgagctata gagttaaaag aagaaattca aacaaattta
     8821 ttgcttagtt taagacttgc tcaaattgaa ggtttgggaa aaaattccat agaaaattta
     8881 ttaaattatg caacgcattc aactggtgtt ctttttaatg cttatgattt aagtagtttt
     8941 tctgaaaaag atgaagaatt taccattaat ttaagcaagc aagtgcatgg agaaacaaaa
     9001 gtatcttgca aagataaact tttaagcttt agcggaattt tccaaaataa tgaaagtaga
     9061 tgtaaagatg attctaaaat aattattatt gaggctaatt ataccgatcc attggtaatt
     9121 gcagatgcta aaatatatca taaagatcaa gatgaaaaaa tgctttatag aagttttagg
     9181 ggaagtgaac ctaaattaaa tttaggaatg gattttttgc ttagtatttt tgagcagatt
     9241 ccaaatcttg ttatttatag ttcttctcaa caaattttaa ccgacaaaga attaccaatc
     9301 ataccaataa gcattgaaag tattggcgat ataatagggc aaaatgttga taaagatgaa
     9361 gtattaaaaa tattgaaaaa attaggtttt gaactcatac tttcaggtga agggcttata
     9421 aatgttaaag cacctttaca tcgtcctgat attaaaaatt tatcagatat ttgcgaggaa
     9481 gttgtaagaa ttataggtat tgataatatt gcttctaagg gtttagaatt tatagaaaaa
     9541 aatcgtttaa attctgcata taaaaattat attgagtttt tgaatttaag gaaaagagca
     9601 gtagctagtg gttattttga aagcttacat tatgttttgg ataatgaaga agaacttaaa
     9661 agattgggtt ttgactctgt taaattaaaa ctaattaatc caattacagc agaacttaat
     9721 actttaagaa caaccctttt aaatcatttg ttaaatgcag caagtttaaa tgcaaaaaat
     9781 tctaaaaaaa ttattaaact ttttgaacta ggggctgttt tcaatgttaa taatcaagaa
     9841 ttaaatcgta tcgcatttat ccattctggc ttaaaagaag aagctaaaat ttccaacaag
     9901 gccaaacctg aatcggtgca attttatgat tttcttttag acattaaaaa tattataggt
     9961 gattttaaac taaaatcatc aaaatataat attttaagcc cttatgaaca agcagatatt
    10021 tacctatcgg atattaaagt aggttttata ggccgtttgc atttaaaaat agaaaatgag
    10081 agagatttac caaaaacata tatttgcgaa cttgatttag atttaatcag gcaagatttt
    10141 aaaatagcta agccttactc caaattccca gctatcacta gagatcttag cgtgttaata
    10201 cctaaaggtt ttgaatacaa tcagattaaa aattgtatcg aagaattgaa tttagaaata
    10261 cttgaaaatt ttcgtttagt tgatatttat agtgatgaaa accttaaaga attttatagc
    10321 attactataa gtttttcttt tagggatata aataaaactc tagaggataa tcaa
//
LOCUS       DAEDTT010000057        10365 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.057, whole genome shotgun sequence.
ACCESSION   DAEDTT010000057 DAEDTT010000000
VERSION     DAEDTT010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10365
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.057"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..821)
                     /locus_tag="KLC54_001091"
     CDS             complement(<1..821)
                     /locus_tag="KLC54_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HBD9177465.1"
                     /translation="MLFLLKKIFPQLFISIILEDKKNIVKASIYRGNKLISSNEKTFD
                     KSENLLEYIKNLSKHFLFYHTALFLDAKEQGLIPSTNIQDCEHFNIGKISLQHILFNN
                     ALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYNIQKEKQPDDQILLYGFKQGHLL
                     AIIVAKGNTILYGDFKIFEQELGLELELPSEDNQEIENNNDDTEVTLDNFNEALNNKF
                     DLLDQENNLETLDNNDNFNLDELNQFSNDMELCRYIITSIEKFYNDDKYAGVFING"
     gene            complement(823..1452)
                     /locus_tag="KLC54_001092"
     CDS             complement(823..1452)
                     /locus_tag="KLC54_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HBD9177466.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKASVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWEFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMEQFDKINLADQFKE"
     gene            complement(1436..2737)
                     /gene="miaB"
                     /locus_tag="KLC54_001093"
     CDS             complement(1436..2737)
                     /gene="miaB"
                     /locus_tag="KLC54_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HBD9177467.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAVEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            complement(2734..2976)
                     /locus_tag="KLC54_001094"
     CDS             complement(2734..2976)
                     /locus_tag="KLC54_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177468.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            3103..4191
                     /gene="nusA"
                     /locus_tag="KLC54_001095"
     CDS             3103..4191
                     /gene="nusA"
                     /locus_tag="KLC54_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HBD9177469.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVAKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            complement(4207..5394)
                     /locus_tag="KLC54_001096"
     CDS             complement(4207..5394)
                     /locus_tag="KLC54_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD9177470.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLNMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCMLILIGISFLVRLSIPDFHQKTQSRFFIMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INDKNLFYMYLGQGFGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     EYHGRVIAYTDMIYLSFSAIISMLMGFLFEIDLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            5469..6515
                     /locus_tag="KLC54_001097"
     CDS             5469..6515
                     /locus_tag="KLC54_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HBD9177471.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYRRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIDKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLQRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALARLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            6515..7735
                     /locus_tag="KLC54_001098"
     CDS             6515..7735
                     /locus_tag="KLC54_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HBD9177472.1"
                     /translation="MQYLESRGVKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKTLQKLKINALGELASKNSNFDYLAKNLLNAQIFKCKEFQSPNDGDEKSIET
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELSK
                     NIKDEILVRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSIAFNEFYQGLNLGYYKEELKLMEKVKLETINAYIKKHQ
                     ELLNISFASIQNEN"
     gene            7725..9548
                     /gene="recG"
                     /locus_tag="KLC54_001099"
     CDS             7725..9548
                     /gene="recG"
                     /locus_tag="KLC54_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HBD9177473.1"
                     /translation="MKIKESDFEFFKKLKIRSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGVCKVGKELIFNAKLS
                     RFNHTWQFNNPKILTSFEGFSPKYQILGLKDTKIAAFIHKYLNYENLKESGIEDKYIH
                     FLLNLHAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKQTHFKAHQINVFNIANW
                     LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAI
                     LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLIIGTHALIHLE
                     SHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQSELLNFS
                     FIKQMPFKKDITTYCIQNEGFSKLSEKIKEEISKNHQIIIIYPLVSASDNIPYLSLEQ
                     AKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSMIVIVG
                     AERLGLATLHQLRGRVGRVGLKSTCYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNR
                     LSGDLLDGFMQHGNEFKFFDFSKDEEILEKVKKDLAKKLPN"
     gene            complement(9545..9928)
                     /gene="ctb"
                     /locus_tag="KLC54_001100"
     CDS             complement(9545..9928)
                     /gene="ctb"
                     /locus_tag="KLC54_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HBD9177474.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEVWLGLFEESLNMVYNEEM
                     KAVILQRAQMIASHFQNMLYKYGGH"
     gene            10023..>10365
                     /gene="nssR"
                     /locus_tag="KLC54_001101"
     CDS             10023..>10365
                     /gene="nssR"
                     /locus_tag="KLC54_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HBD9177475.1"
                     /translation="MKDYLELLSSVGKLKKIQKNSILFYEGEEAKKFFILLKGKIRIY
                     KSTASDKEITLHYFNPPNFIAEMPAFKKLNYPANAIFEEDGEILEIDFINFQNLCSEN
                     KEFNFLLISSLF"
BASE COUNT         3738 a         1440 c         1627 g         3560 t
ORIGIN      
        1 ccattgataa ataccccagc atatttatca tcattgtaaa atttttcaat gctcgtaata
       61 atataacggc aaagttccat atcattgcta aattgattta attcatcaag attaaaatta
      121 tcattattat ccaaagtttc aagattattt tcttgatcaa gtagatcaaa tttattattt
      181 aaggcttcat tgaagttatc taaggtaact tcagtatcat cgttgttgtt ttcaatttct
      241 tgattatctt ctgatggaag ttcaagctct aaacctaatt cttgctcaaa tattttaaaa
      301 tcaccgtata aaatagtatt gcctttagca acaataattg ccaaaagatg tccttgttta
      361 aatccataaa gtaaaatttg atcatcaggc tgtttttctt tttgtatatt gtagtaaaga
      421 agggcaaaag gggaatataa aaaatctaaa cctctatatt cttcaaaaag ctcgctataa
      481 tattccacat gttcggtagc cgtataaaca agggcattat taaataaaat atgctgtaag
      541 ctgatttttc ctatattaaa gtgctcacaa tcttgaatat ttgtactagg tattaatcct
      601 tgttctttgg cgtctaaaaa taaagcagtg tggtaaaata agaaatgctt gcttaaattt
      661 tttatgtatt ctaataaatt ttcactttta tcaaaagttt tttcattgct actgattagt
      721 ttatttcctc tgtaaataga agcttttaca atattttttt tatcttctaa aataatacta
      781 ataaaaagtt gtggaaatat ttttttaagt aaaaataaca tttcattcct taaattgatc
      841 agctaagtta attttatcaa attgttccat tagaaattct ttagcttttt ctttatctaa
      901 agataaaata tccaaaggtt cacttagact ataagtaatc ttactaaaag gttttggcaa
      961 gatcatctta tcccaacttt taaattccca aaaacgattt gcttcatagt ttaaaattct
     1021 tatctttagt tctttttttt gagccaaaat gatagaacca tctgaaatac tatgataagg
     1081 cccacgtgga ccatcaggcg tgataactat atcgtcattt tgttctaaaa ctttaaatgc
     1141 agctctaagt gcactgctag caccccttga agtgcttcct cttacagtat caagaccgaa
     1201 aagcttgatg atttttgcaa tttgttctcc atctttatgg tgggagatca tgacataggc
     1261 ttttttattt ttttgtctat aatgtctaaa cgcaaaaggc atgagtgcta attttccatg
     1321 ccaaaaaagt atcacactag ctttacggtc aactttttca cctttatagt gctttttaca
     1381 gcttaaaaaa ataagccatt gcaagatgaa aattatatat gttaagcaat ggattttaaa
     1441 cgatttcccc atataaaacc atacgctttg cattagtgat ttttacttct ttaaattgcc
     1501 ctaaaagttc ttcgctacct tcaacttgaa ctaaaaaatt attatctgtt cttccagcaa
     1561 tgctattgcc tgctcttaat tcttcaaata aaactttaaa agttttattt tcttgttttt
     1621 ttacaatttc atctaaaatt tcactatgac gattttgtaa ggtgctaagt cttcttgaag
     1681 ctgtttcttc atcgatttga ttaggcatgg ttgcggcttt tgttaaaggg cgtttggagt
     1741 atttaaaaga aaaaatttgt tcaaaacgca ctttttccaa aacatccata gtttcttcaa
     1801 aatctttttc actttcccct ggaaaagcta caataatgtc tgtagaaatg ctaacatttg
     1861 gacaaagttc tctaagtttt aaagctctat ttaaatacca ttctttagta tagccacgtt
     1921 tcatggcttt taaaatttca cttgaaccgc tttgtaaagg catatgcatg gatttgcaaa
     1981 cttttggatt attggcaaaa acttctaaaa atttatcatc catgtgcaaa ggatgtggac
     2041 ttgtaaagcg aatgcgttcc aaaccttcta tagtgctaag ttcttctaaa agatctgaaa
     2101 agtccatttt tttatgttcg tttctaaatc ttttgccgta gttattgaca ttttgtccta
     2161 gcaagaaaat ctctttagcg cctttttcaa cggctttttg agcttctttg tagatgatgt
     2221 taaaaggtat ggaaatttca tctcctctag tatgtggcac tatacaataa gtgcagtgtt
     2281 tatcacaacc tatggagata ttaatatagg atttataaat actatttcta aaatctgcaa
     2341 aagcaaattc actttcatca tagtctatgt ccacccccat aaattttgga gtttttatag
     2401 cttgagtgat tttggaaata tttcttgccc ctagaacaaa atccacataa ggagcacgtt
     2461 tgaaaatttc atttcccaaa tgtgatgcag tgcatccaca aactcctatt ttagcacctt
     2521 cttttttaac tttttcaaag ccacccactt ctgagaaaag tttatgcaca ggtttttcac
     2581 gcactgaaca ggtattgata agaataagat ctgcttcttt gatatcttct gttagtgcgt
     2641 aattttcttt ttgtgttaat tctgcgatca tatgctcaga atctctgaca ttcatcgcac
     2701 aacctaaagt ttggataaaa agttttttag cactcaaaga atatgtacct catacataaa
     2761 atcattatca tcaagtccgt attttacggt tctatgataa atgcttactc cttttttttc
     2821 aaaatgattt acaagggcaa tgagttgttt gtgtgtatta tctttatcaa aataaaaaaa
     2881 cttttgtcct tctttttcta tagcctcttc gattttttct aggctaatat ttttaggttt
     2941 ttcattaatc aaagttcttg ccaattttaa ttccatagct aaatccttaa gaattttcat
     3001 tttaatctat aattttagca aattttactt ttaattaaac ttattaagga tataattttt
     3061 atctacattt ttaaatttcc cacaaaaaag gttttataaa atatggaaaa gatagcagat
     3121 attatcgaat ctattgctaa tgaaaaaaat ttaaacttag agaatgtaag agaaaaggta
     3181 gctaccgctt taatcaatac tgcaaaaaga atttatggac aagaatatga gttttttgtg
     3241 gatcctaaaa atttaaatct ttatcaaaaa attaccatag tagcagataa tgacgagaga
     3301 ttgcaaaata aaagtgagag ttttatcgcg ttaagtaagg caaaatcaga agctccagat
     3361 gttgaaatag gagatgaatt aacctatgaa tgttctttgg aaaatttagg aagaactgcg
     3421 gtaaatacct tgcataaaga acttgaatat catatacaaa aattattaga acaaactatt
     3481 tttgaaaaat ataaaaacaa agtagggcaa atggtttttg gtacagttgt tagagtggat
     3541 aatgaagaaa atacttttat tgaaatagat gaattaagag cttttttacc gagaaaaaat
     3601 cgcattaaag gggaaaagtt taaaataggt gatgtggcaa aagctgtgat acgccgtgtt
     3661 tatacagata agggtattaa aatcgagctt agtcgtacaa gtcctaaatt tttagaatgt
     3721 ttacttgaag ctgaggttcc agaaatcaaa gatggttatg tcaatattat aggatgtgct
     3781 agaattccag gtgaaagagc aaaaatcatt cttcaggcca atggagcaaa tatcgatcct
     3841 gtaggtgcta cagtaggtgt taaaggtgta agaattaatg cagtaagcaa agagcttcat
     3901 aatgaaaata ttgattgtat agaatttaca aatgagagtg aaattttaat ttctcgtgcc
     3961 ttggctcctg ctattgtaaa ttctgtaaaa attgaagata aaaaagctat tgtaagttta
     4021 aatagcgaac aaaaaagcaa agctatagga aaaaatggta ttaatattcg ccttgcttct
     4081 atgttaagtg gttatgaaat agagctcaat gaattaagct catcgcagct aaataatgcc
     4141 atcagtaatg aagaagcaat gaaaaatctt caagatttat ttaaaattta aaatatttgt
     4201 gaattttcac aaatattttt tataaaacca cttccaataa aatgccgcaa agataaaaat
     4261 catacccaat aagcctgtaa tcagttctaa actcaggtct atttcaaaca aaaagcccat
     4321 aagcattgaa ataatagcac taaaactaag ataaatcata tctgtataag cgatcaccct
     4381 accatgatat tctttgtcgg catttttttg tatcatagtg taggtataag cccaaagcgc
     4441 tgaggtaaaa aaacctgcac caattaatcc taaaaaagaa atataaaaat taaattgagt
     4501 taaagcccaa agtataatac caaaaccttg accaagatac atgtaaaata aatttttatc
     4561 attgataaat ttgcttaaaa ccataggtcc tatagccaaa gaacaagcac gtaccgcatt
     4621 taaaaaccct attactaaag cagcagataa aacttcttta tattgatgtt gcgctaaaag
     4681 cgtaactaag gtttcataag cagttaaacc tataaaagcg tgaagcaaga taagatgaaa
     4741 aattatttta ttatttaaaa catagaaaaa tccttctttt atcatgataa aaaagcgact
     4801 ttgtgttttt tgatgaaaat caggaatgct taatcttact aaaaaagaaa tgcctatgag
     4861 tataagcatg cagtcaaata aaaaagcggt tttaactcct agaaaataaa taaaaattcc
     4921 cgcacttgcc atacctgctg tataagaaat cgcccaaatg acactgtgca tttcattagc
     4981 gagtttaagt tcttgagggg ttaaaatttt cgccaataaa ctcatttcag cttgaaaata
     5041 aatcgaagca acacaaagtc ttatgaaaat taaaataaat aaaagccaaa gcatactaag
     5101 acttgtgaca aaaataagac aaaaaataga aattaattct atactaatca tattgagtaa
     5161 aagtttttta ggtttatttt tctctactat gacgccatta ataggagcaa gcaaaactcc
     5221 aggtaaaaaa gcaagcatag cacttgtagc tgttgcccaa gtaggagcat taagctcaac
     5281 caaaagggta aaaactcctg tttgagaaaa ccatgctcca aaatatacta taaactgaac
     5341 cgaagctaat attctgatat ttttattatt ttttaatagt tcaatgtaat tcataagcga
     5401 aactatagca taatttatat tttaaatgct ataattattt taatttatgc aaaaaacaag
     5461 gaaaaatttt gaaaagactg gataaaaaag aagctttaga tttattacat catgcaagtt
     5521 taacagagct tggagaaatg gcttatagaa gaaaattaga acttcatcct gaaaaaatca
     5581 ctacttttgt tgtagataga aatattaact atactaatgt ttgttgtatt gattgttctt
     5641 tttgtgcttt ttatcgtcat cataaagaag atgatgctta tattttaagt tttgaagaaa
     5701 tagataaaaa gatagaggag cttgaagcta ttgggggtac acaaattctt tttcaaggcg
     5761 gggtgcatcc aaaattaaaa atagaatggt atgaagaatt agtttcttgg ataaaagaac
     5821 attatccaaa tatcactgta catggttttt cagcggttga aatcgcttat attgcaaaag
     5881 catctaaaat ttcaattact gaagtgcttc aaagattaca agctaagggt ttattttcta
     5941 taccaggagc aggtgctgag gtgctaagcg atagggtgcg tgatatcatt gcacccaata
     6001 aatgtgatac agctacttgg ttagaagtac atcgccaagc tcataaaatc ggtatgaaaa
     6061 gtacagctac tatgatgttt ggaacggttg aaaatgatga agaaatcatc gatcattttg
     6121 aacatttaag aaaattacaa gatgaaacag gtggttttag agcttttatt ttatggagtt
     6181 ttcaaagtga taatactgct ttaatccaaa aacatccaga gattatgaaa caaagttcta
     6241 acaagtattt aagactttta gctttagcaa gactttattt agataatttt aaaaatttac
     6301 aaagttcttg ggtaactcaa ggctcgctta taggtcaact tgctttaaaa tttggggcta
     6361 atgatttagg ctcaaccatg atggaagaaa atgtagtaag tgctgcagga gcaagttata
     6421 gaatgaatca agatgagatg ataaggctga ttagaagttt aggcgaaaat ccagctaaac
     6481 gcaataccgc ttatgaaatt ttagaaaggt tttaatgcag tatttagaga gtaggggtgt
     6541 taaaatccct tttatttttg aaaaaaattc tgattttcct attgttgttt taaagcttgt
     6601 ttttagaaat tgcgctagaa gttatgatga aatagcaggt ttggctaaaa tgttttcacg
     6661 cattttaaat gaaggcgtgg atgataaatt ttttaaggat ttagaattta gagcgataaa
     6721 tttagaggca agtagtggtt ttgaaagttt ggaaatcaat ctttcttgct tgaaagaaaa
     6781 ttttgatttt gctttaaaga gtttagaaaa attgctttta aaaccaagaa tagaagaaaa
     6841 aactttgcaa aaattaaaaa tcaatgcctt aggtgagctc gcgagtaaaa atagtaattt
     6901 tgattattta gcaaaaaatt tactcaatgc tcaaattttt aaatgtaaag aatttcaaag
     6961 tccaaatgat ggagatgaaa aaagtataga aactttgtct ttaaaagatt tgcaaaattt
     7021 ttataaaaat tttatccatc ttagtgattt ggttgtgatt ttaggaggag atttagaaga
     7081 aaaacaagcc aaggaagatc ttttaaaact cttatcaaaa cttcaaatag gtaaaaaaaa
     7141 tactccaaaa aaatatgagt taagcaaaaa catcaaagat gaaattttgg tacgcccaga
     7201 aagtgaacaa gcttatattt attttgctac gccttttttt gctgatttta aagataagga
     7261 tttatatctt gcaaaaattg ctttatttgt tctagggcaa ggaggatttg gttcaaggat
     7321 tatggaagaa attcgcgtta aaagaggtct tgcatactca gcttatgcta tgcttgatat
     7381 gaatatgtct ttttctagag tttttggata tttacaaact aaaaatgaaa gcgctaaaga
     7441 agctaagaaa atcgtaaaag agctctttga agattttata aaaaatggca tgactcaaaa
     7501 cgaacttgat caagctaaaa attttctcat aggatcaact cctttgcgtt atgaaagctt
     7561 aagtaagcgt ttatctatag cctttaatga attttatcaa ggtttaaatt tgggatacta
     7621 taaagaagaa ttaaaactta tggaaaaggt taagcttgaa accataaatg cttatattaa
     7681 aaaacatcaa gaacttttaa atataagttt tgcaagcata caaaatgaaa attaaagaaa
     7741 gtgattttga attttttaaa aaattaaaaa ttagaagtgc tattgattta gcgcttcttt
     7801 tacctaaaaa aattgaaaat ttaaatccaa gtaaaaatcc caaagaaaat gaaatttgca
     7861 cccaaaaaat cactataaaa agcgttagtt caagaaaaaa tcaacttttt ggtttaggtt
     7921 tttgtgaaga atggcaagaa aatatttctt ttgtattttt tcatcctaga gcttggcatt
     7981 ttggggtttg caaggtagga aaagagctta tttttaatgc taaactctcg cgttttaatc
     8041 acacttggca atttaacaat cctaaaattt taacttcttt tgagggtttt agtccaaagt
     8101 atcaaatttt aggtttaaaa gatacaaaaa ttgccgcttt tatacataaa tatcttaatt
     8161 atgaaaattt aaaagaaagt ggcatagagg ataaatatat acattttctt ttaaatttac
     8221 atgcttatga tgaaaaaagt ttttttatgt ttgaaaattt gcaaaatttt agcaaagatt
     8281 taaaatatat agaaatatat aattttttaa agcgtttaaa agctaaacaa acgcatttta
     8341 aagctcatca aatcaatgtt tttaatatag ctaattggct taaagatttg cctttttctc
     8401 ttactaaaga tcagcttaac gccttaaaag acatagaaaa agatttacac tcaaaagaag
     8461 ccaaaaggcg tgtgattatg ggtgatgtgg ggtgtggtaa aaccttggtt ttactcggtg
     8521 cggctttgat ggtttatcct aagcaagcta ttttaatggc acctactagt attttagcgt
     8581 atcagcttta tgaagaggct aagaaatttt tacctgattt tatgaatatt ttgtttatta
     8641 aagggggtaa aaaagaaaaa gatttagaac aaaatatcca aaaagcaaat cttatcatag
     8701 gcactcatgc tttaattcat ttagaaagtc ataatgccgt gcttgtaatg atagatgaac
     8761 aacatcgttt tggatcagct cagcgtgaaa aaattcattc tttaaataag caagaatttg
     8821 cccctcattt tatacagttt tcagctacgc ctattccaag aactttaagc atgatacaat
     8881 ctgaactttt aaattttagc tttattaaac aaatgccttt taaaaaagat attacaactt
     8941 attgcataca aaatgaaggt ttttctaagc ttagcgagaa gatcaaggaa gaaatttcta
     9001 aaaatcatca aattatcatt atttatccct tagtgagtgc tagtgataat attccttatc
     9061 tttctttaga gcaggccaaa gaatattggc agagtcatta tgaaaaagtt tttgtaactc
     9121 atggaaaaga taaacaaaaa gatgaaattt tagagcgttt tagagatgag ggaaatattt
     9181 tactaagcac tacagtggtg gaagtaggta tttctttgcc aagattgagt atgatagtga
     9241 ttgtgggggc ggaacgttta ggacttgcta ccttacatca acttcgtggc cgtgtaggtc
     9301 gtgtagggct taaaagtact tgctatcttt atactaaact taaagaaatt ccgagtcgtt
     9361 taaaagaatt tgctagcact ttagatgggt ttaaaatagc agagcttgat cttaaaaatc
     9421 gtttgagtgg agatttgctc gatggtttta tgcaacatgg aaatgagttt aaattttttg
     9481 atttttccaa ggatgaggag attttagaaa aggtgaaaaa agatttggca aaaaaattgc
     9541 caaattaatg tccaccatat ttataaagca tattttgaaa atgtgaagct atcatttgtg
     9601 cacgctgtaa aataactgct ttcatttctt cattataaac catatttaaa ctttcttcaa
     9661 aaagtcctag ccaaacttca aaaaattctt gaggaaaagg aggtaaatct agatgctttt
     9721 ttaagggttg cccattataa tcaccttctc ctaaaagcat gcctgcccaa aaatttccta
     9781 tttttgcttt atgttctttc cattcttcat cacttgttcc aatagcattg ttaaaaatag
     9841 ggcccaaatc cttatctttt ctaacttttt cataaaatat ttccatgagt tttgctatgc
     9901 tttcttgatt aattgtttca aatttcatat aagcctttct taaatgttaa ttttatggcg
     9961 ttaatatagc aaaaataaga taaattaaat ttaacataag ttaagaatgg aaaatgtata
    10021 taatgaaaga ttatttagaa cttttatcta gtgtaggaaa attaaaaaaa attcaaaaaa
    10081 atagtatttt attttatgag ggcgaagagg ctaaaaaatt ttttatttta ctcaagggaa
    10141 aaatacgcat ttataaaagt acagcaagtg ataaagaaat tactttgcat tattttaatc
    10201 ctccaaattt tatagcagaa atgcctgctt ttaaaaaatt aaattatcct gctaatgcta
    10261 tatttgagga agatggagaa attttggaaa ttgattttat taattttcaa aatttatgca
    10321 gtgaaaataa agaattcaat tttttactta tcagttcact ttttg
//
LOCUS       DAEDTT010000058         9960 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.058, whole genome shotgun sequence.
ACCESSION   DAEDTT010000058 DAEDTT010000000
VERSION     DAEDTT010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9960
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.058"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            3..605
                     /locus_tag="KLC54_001102"
     CDS             3..605
                     /locus_tag="KLC54_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HBD9177476.1"
                     /translation="MSKRRACKLFNDKKINEKDLHFILESGVLAPSSHGFEPWKFVVL
                     EQKEHNLKLSTLCYNQQNVASASHNIIFLARKDLQSKDEFAQKQVRRFSGSSEENFQK
                     ILKIYTHKTNAMNDNELYHYAQLQCYLAMMQMSLAAMSLGIDSCMIGGFEKARVDNFL
                     HLTYPFETAVILSLGYKAHEPKYSTQRLNFNEVVEFYKEK"
     gene            605..1210
                     /locus_tag="KLC54_001103"
     CDS             605..1210
                     /locus_tag="KLC54_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HBD9177477.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLNKEDLNSILEIARLSPSSLGLE
                     PWKFIVVQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     IQKRLDTYMPFLKSLNQEQKISYAREQAHIALASILYSANALNIASCTIGGFDKEKLD
                     SYLSLDIQKERSNLVVALGYCNDEKNPQKNRFSFDEVVKFI"
     gene            1335..1871
                     /gene="pgsA"
                     /locus_tag="KLC54_001104"
     CDS             1335..1871
                     /gene="pgsA"
                     /locus_tag="KLC54_001104"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HBD9177478.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIYKFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALILTLY
                     SGFEYIYTYIKAQKKGEK"
     gene            1868..2974
                     /gene="rseP"
                     /locus_tag="KLC54_001105"
     CDS             1868..2974
                     /gene="rseP"
                     /locus_tag="KLC54_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HBD9177479.1"
                     /translation="MRSLLLLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTSYRLSALPLGGYVKLKGQDDMRPSFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGNIAPNSAAQEIGLQ
                     KNDTILEINGVKIQSFDEISKHLSLEPLKILINREGKNLEFILTPKIGQGYNDFGQII
                     EKPQLGVSPNGTSTLVKHQGLESFKYAVQESFQASTLIIKGIIKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKV
                     PQRAFEYLSYTGMAILLSLMLFATYNDISRIIGE"
     gene            2967..3832
                     /locus_tag="KLC54_001106"
                     /pseudo
     CDS             2967..3832
                     /locus_tag="KLC54_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
     gene            3919..4296
                     /locus_tag="KLC54_001107"
     CDS             3919..4296
                     /locus_tag="KLC54_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HBD9177480.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLTKNSAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            4305..4856
                     /locus_tag="KLC54_001108"
     CDS             4305..4856
                     /locus_tag="KLC54_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HBD9177481.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPAPQRNQNP
                     QHEEKLKEIDIDAYDSDDTNLPF"
     gene            4867..5127
                     /gene="rpsR"
                     /locus_tag="KLC54_001109"
     CDS             4867..5127
                     /gene="rpsR"
                     /locus_tag="KLC54_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HBD9177482.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(5188..7563)
                     /gene="lon"
                     /locus_tag="KLC54_001110"
     CDS             complement(5188..7563)
                     /gene="lon"
                     /locus_tag="KLC54_001110"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HBD9177483.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDSSNMKALDL
                     AIKNDSMLFVAPSRLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFIHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDIPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPSEKF
                     HIMKKYLIPDELKKHGLKSNELSIDDETIELIISDYTRESGVRNLRRKVAELCRKSAK
                     KLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAV
                     KIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNI
                     HIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEK
                     LIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLV"
     gene            complement(7580..8227)
                     /locus_tag="KLC54_001111"
     CDS             complement(7580..8227)
                     /locus_tag="KLC54_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HBD9177484.1"
                     /translation="MKKGIFLLVFLSVFFNACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETTLIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
     gene            8388..8777
                     /gene="fliW"
                     /locus_tag="KLC54_001112"
     CDS             8388..8777
                     /gene="fliW"
                     /locus_tag="KLC54_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HBD9177485.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
     gene            8777..9508
                     /locus_tag="KLC54_001113"
     CDS             8777..9508
                     /locus_tag="KLC54_001113"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HBD9177486.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            9505..9807
                     /locus_tag="KLC54_001114"
     CDS             9505..9807
                     /locus_tag="KLC54_001114"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177487.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYHYTQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFINDGIFQFQKLYFQDQNYSVYFKE"
BASE COUNT         3551 a         1551 c         1383 g         3475 t
ORIGIN      
        1 taatttcaaa acgcagagct tgtaaacttt ttaatgataa aaaaatcaat gaaaaggatt
       61 tgcattttat cttagaaagt ggagtcttag ccccaagctc acatggattt gagccttgga
      121 aatttgtagt attagaacaa aaagaacaca atcttaaact ctcaactcta tgttacaatc
      181 aacaaaatgt agcaagtgcg agtcataata ttatttttct agcaagaaaa gatcttcaaa
      241 gcaaagatga atttgcacaa aaacaagtgc gtcgtttctc aggttctagc gaagaaaatt
      301 ttcaaaaaat tttaaaaatt tacacccata aaaccaatgc aatgaatgat aatgaactct
      361 atcattacgc acaacttcaa tgctatcttg ctatgatgca aatgtcgcta gctgcaatga
      421 gcttaggtat tgattcttgt atgataggtg gctttgaaaa agctagggtt gataattttc
      481 ttcatttaac ttatcctttt gaaactgctg taattttatc cttaggatat aaagcccacg
      541 aaccaaaata ttctactcaa cgcttaaatt ttaatgaagt cgtcgaattt tacaaggaaa
      601 aataatgaaa aaagaacttg aaatttttag cacaagatat tcttgtagaa attttaaaaa
      661 tgaaaaactc aataaagagg atttaaattc tattttagaa atagcaagat taagccccag
      721 ttccttagga ctggaacctt ggaaatttat agtagtgcaa gatgagaaaa gaaaagaaga
      781 actttctaaa atttgcaatc aacaaaaaca tgtaaaagat tgtgctgcat taattatcat
      841 catttcaaga cttgattttt tggattattt tgaagaaaaa cttagaaaaa gagatatgag
      901 tgaaacagaa attcaaaaac gcttagatac ttatatgcct tttttaaaat ctctaaatca
      961 agaacaaaaa atatcttatg caagagaaca agctcatata gctctagcta gcatacttta
     1021 cagtgctaat gctttaaata tagcaagctg cactataggt ggttttgata aagaaaagct
     1081 tgattcttat ttatcacttg atattcaaaa agaaagatca aacttggtgg tggctttagg
     1141 atattgcaac gatgaaaaaa atcctcaaaa aaatcgtttt agttttgatg aagttgtaaa
     1201 atttatttaa attttgcttt taagcaaaat ttaaataaaa ataaactgat tcttttttgt
     1261 atttttacta agtctttgct taaattttat acaattttga ttataatttt acatttaatt
     1321 tcacaaggct tgttatgaat ttacccaata tcttggcgat ttttagaatg gttttagcac
     1381 ctttattatt ttttttacta atttataaat ttgaaaatat tcatcaaagt tggattaact
     1441 attttgctgc cttaactttt tcattagcag ctttaagtga tttttttgat ggatacatcg
     1501 caagaacttg gaaacaaact acaaaactgg gtggaatctt agatccatta gctgataaaa
     1561 tgcttgtttt agcagctttt ttaggacttt tgcttacagg aaaagctaat gaatgggtaa
     1621 tttatattat attagtaagg gaatttttta tcacaggttt tagagttgtg atgattagcg
     1681 aaaatttaaa tgtcaatgct tcttttgcag gcaaacttaa aaccgctttt caaatgactg
     1741 cgataggatt tttaatcatg gagtggatag gcggagaaat tctactttac atagctttga
     1801 ttttaactct ttattctgga tttgaataca tctatactta tataaaagct caaaaaaaag
     1861 gagaaaaatg agatctttat tgcttttaat tgttattttg attttgggaa ttaaatttta
     1921 ttctattgaa tttttagcaa ctgttttagt catctcattt ttaattttct ttcacgaatt
     1981 aggacatttt ttagctgcaa gatctttggg tgtaaaagtt gaagtcttta gcataggatt
     2041 tggaaaaagt cttatagagc gtgaatttaa aggcacaagc tatcgcttaa gcgctttgcc
     2101 acttggagga tatgttaaac ttaaaggaca agatgatatg cgtcctagtt ttgaaaatct
     2161 agacaaagat agctatagca ttttaagtcc tttaaaaaag atttatattc tttttgctgg
     2221 accatttttt aatctgattt tagctttttt tctttatatt atcataggaa atttaggtct
     2281 aaacaaactt gctccgcaaa taggaaacat agcgccaaac tctgctgcac aagaaatagg
     2341 acttcaaaaa aatgatacta tcttagaaat taacggtgta aaaattcaaa gctttgatga
     2401 aatttcaaag catttaagtt tagagccttt gaaaatatta atcaatagag aaggaaaaaa
     2461 tttagaattt attttaactc caaaaatagg acaaggatac aatgactttg ggcaaattat
     2521 tgaaaaacct caacttggag tcagtccaaa tggtacaagc actcttgtaa aacatcaagg
     2581 tttagaaagt tttaaatatg ccgtacaaga aagttttcaa gcttctacac tcatcatcaa
     2641 gggtataata aaactcataa gtggtgaagt tgaagcaaaa aatttaggcg gtattatcac
     2701 catgactgaa attacctcaa aggctgcaca aaatagcttt actttgcttt tatttatcac
     2761 tgctttaatt tctataaatt taggcatttt aaatctttta cctattccta tgcttgatgg
     2821 agggcacata ctttttaatc tttatgaaat gatttttaga cgcaaggttc cacagcgtgc
     2881 ttttgaatat ttaagctata caggcatggc aatactttta agcttaatgc tctttgcaac
     2941 ttataatgat atatcaagga ttataggtga ataaaaaatt ttcctaccct attccaaatt
     3001 ttactgatag aagaaaaagt atcatctttt ggcgctattt gcgttttcaa gcaagaaaaa
     3061 ttctatattt tcatcaagta aggcttctag aaaaaacgct taatgaagaa aaaaataaac
     3121 atttaaaaga ctttttctct caaagaccct atgcttgcta caatgctata agaagatttt
     3181 gcgataaaag ttttaaagca aatgaacgcg ttaaaacact tatttatgat gttgataagg
     3241 gacttacttg ttttaaattt cttcccgaag aacaaatgat tttttctttt gatgaagatt
     3301 ttgagctttt ttaggatata accataatgt ttacgaagaa ggtttttggg ctttttcttt
     3361 aaaatttaaa aaatacacta tctcacaatg taatttttgc tttactttag aaaataatct
     3421 tctactttct tgcatacaag gatataaata caaagatttt aatattttag aaattaataa
     3481 aattttaact aaaaaatgtc atggtttgcg ccctgttgct ttacttatag aatgctctaa
     3541 gatgctttgt gaaattttaa aacttcaagc tactttaggt gtacatgaaa aaaatcaaat
     3601 ccgttctcaa aaaggaaaag aaaaaggcta ttttgtagat tatcaaaaaa tttggctaga
     3661 aaatggtgga gaattaataa aaatcgataa acacaaatac tataaactcc accactctca
     3721 aaaaaaccta gaagaaatcc cttcgcaaaa acgctccatg tataaaaaac gttttgctat
     3781 gcttgaagaa atcaaaacaa atttagataa aaccttaagt attcaagact aattaagtat
     3841 attttgatat aatctagtct tgctttatgc aaaatccttg ctcataaaaa tgggctttaa
     3901 tatccataag gagaaaagat gaaacattat gaggttttat ttatcttaaa accaacactt
     3961 actgaagagg aagtgaatgc gaagttggaa ttcgttaaag aagtcctaac caaaaatagt
     4021 gcagaaattg aaactgttgt tccaatgggc actagaaaat tagcgtataa aatcaaaaaa
     4081 tacgaaagag gaacttattt tgtgatttat ttcaaagctc ctacaaactt gatcgctgag
     4141 cttgaaaggg tgttaagaat cactgaagaa gtaataagat ttttaatcgt aaaatatgaa
     4201 aataaaaaag aaattgcagc ttgggaaaaa ctaagccacg ggattaagca atctaaaaaa
     4261 gaaatcaaac ctttagatgc tcctgaaatt caataaggaa aaagatgttt aacaaagttg
     4321 ttttggttgg aaatcttaca cgcgatatag aaatgcgtta tgcacaaagc ggtagtgcta
     4381 ttggggcttc cgctatagca gtaacaagaa gatttaccac aaatggagaa aaaagagaag
     4441 aaacttgctt tattgatata agcttttatg gtcgcaccgc agaagttgca aaccaatacc
     4501 ttacaaaagg ttcaaaagta ctcatagaag gacgtttgag atttgaacaa tggagtgatc
     4561 aaaatggaca aaatcgctct aaacatagca ttcaagttga aaatatggaa atgcttggca
     4621 attccaatgc tccacaacaa ggcggaaatt ttggcaataa tagcttttca aacaacaatt
     4681 atagtggaaa ctatgaaaat caaagctatg atccttatat gagtgaaaat caaaatttta
     4741 ataaagcaaa aacaaaccct gctccacaaa gaaaccaaaa cccacaacac gaagaaaaat
     4801 taaaagaaat tgatatcgat gcttatgata gcgatgatac taatttacca ttttaaagga
     4861 taaactatgg cagaaaaaag aaaatactct cgcaaatatt gcaaatacac tgaagcaaaa
     4921 gttgaattta ttgattataa agatacagca atgttaaaac atgctttatc tgaaagattt
     4981 aaaatcatgc cacgccgttt aacaggcaca agcaaaaaat accaagaaat ggtagaagtt
     5041 gcaatcaaac gcgcaagaca tgtagctctt atcccttata tagtggatag aaaagaagta
     5101 atcaacaatc cttttgaagg actataatct tttaaaagca aacttgtaaa aagtttgctt
     5161 tcttatacat ttattctcaa aataaaatta aaccaaagta tattctaaga catcactaaa
     5221 agtatcaaca gcaatgattt ccatattgtc tctaacctca ctaggaatat cttttaaatc
     5281 cctttcgtaa ttttttcttg ggattaaagc tgtttttata tctgctttat aagctgcaat
     5341 taatttttct tttaatccgc ctattggtaa aacttttcct tttaaatcta tttcacctgt
     5401 cattgcaaca tctgctttaa cctttttatc actaaaaata gaagcaatag ctgtgcttat
     5461 cgtaatgccc gcacttggac catcttttgg agtagctcca tctggcacat ggatatgaat
     5521 attataacta tcataaacat taactttagg atcgataatt atttttttag gtatttttat
     5581 ttttccttca tcgattaaaa cttttatcat gctaaaagca attctagctg attctttcat
     5641 tacatcaccc aaacttcccg tgagcgttaa ttctccttta cctttaattt ttacagcctc
     5701 tacttttaaa acatctccac ctacacttgt ccaagccaaa ccattaacct gacctacttg
     5761 attttctcca ttattttttt ctatttcaaa aactttttta tctaaaaatt cattcaaatt
     5821 ttttgtatta ataatgactt ttttaatatt ttctaaaagt agttttttag cactcttacg
     5881 acacaactct gccactttgc gacgcaaatt tctaactcct gattcacgag tataatcact
     5941 aatgattaac tctatagttt catcatcaat agataattca ttggatttta agccatgttt
     6001 tttaagctca tctggaatta aatatttttt cattatatga aatttttcac ttggagtata
     6061 agagctaagt tctataaatt ccattctatc tcttaaaggt gcaggaatat tgctaatatc
     6121 atttgccgtt gctataaaaa tgactttact taaatcaata ttaaaattta aataataatc
     6181 cctaaattta gaattttgct ctggatctaa aatttctaaa agcaccgcac ttggatcgcc
     6241 tctaaaactg cgatttaatt tatcaatttc atccaataca attacaggat taatttgttt
     6301 tgcctctatg agtccttgcg taatacgtcc aggcatagcg cctatataag ttctacgatg
     6361 accacgtagc tcattaacat cttcaagtcc gcctaaggct atgcgaataa gctctctttt
     6421 taaagctttt gaaacagaat ttgccagtga agttttaccc acgccaggag gtccataaag
     6481 acaaagtata actttagcac catctttttc tgctattttt cttttttcta aaagttccct
     6541 aactgcaaaa tattcttcta tgcgttcttt tggtttattt aatgcataat gatcatggtt
     6601 gagctgtttt gaaacttctt taatatcaag ttttttctta gaaatttttt caaaaggaat
     6661 atctaatgct gtttctatgt aagtttgaat catcgatgct tcggaattat cttgatgaat
     6721 gcgttcgaat ttttcaattt gttttttgat ttctttataa gcgtcttcgt gtataaattt
     6781 cttctttaat tccagacgct tttgatactc tctaacctca tcttcttttt gtgtgtcaga
     6841 accaagctct ttttgaattt gtcttaattg ttcttttaaa aaatattctt tatttacctt
     6901 atcaatacga gaatgtactt tatttttaat ttctttttga attttattgg cttctatttc
     6961 ttgggcaatt aaatctatta attttactaa tttttgctca agatctgtta aaacaaaaaa
     7021 ctcataagca acttgttttt taatacgcac agtatttaaa atcaaatcac aaatcctaga
     7081 cgcatcaaaa ccttcttcaa ttgttcttaa aagatccgga gaaaaataat gactaatatt
     7141 tgccaaattt tttaccttct cttttaaaac ttcaagaagc gcttcttttt tagttccttc
     7201 taaaaagtct tcttttataa gttctatctt ggcttctaaa ggtttattag aaatttgctc
     7261 tataatttta cccttagcat atccttgaaa aagtattttc acccttccat caggcaaagg
     7321 aacttttcgc atgatagtcc caatcactcc acaattataa atttcatcaa aatttcttcc
     7381 attttccaac cttgaaggtg caacaaaaag catactatca tttttaatcg caagatctaa
     7441 agctttcata ttggatgaat cgttaataaa aataggagtt atcataaaag gatataaaaa
     7501 caattcatct tcaaccaata ctggtaaatt tgctggataa ttttgtatct cttcaatctg
     7561 catttatttt ccttgtttat taaaatcttt caaatatact tctataccaa ggaagctcag
     7621 gtttgataat actttgctga taaaattcac tttcttgaag tctttgttta taaatttgtg
     7681 cactttcatc atgccctatg cgctggtata gattttctat agtactatta agataaaaaa
     7741 ccgctaaatt aaattttgta agcattgttt gaaccaaagg ttcatattct gtataaggat
     7801 aatctttcaa aaaagtatct atttcttttt ggctttcaag cattaaagcc tgattacgat
     7861 ttggcactgc aaatgcatca aattttgctt taattttaag ataacgaata taatcagcat
     7921 tgcgtgaatt tccaaatttt ttattatatt catctaaata aaattcagct aacttatatt
     7981 cctcttcatc catatgagct tgtgctaaaa taattaaagt agtttccaat aaaggatcgg
     8041 caacgtgctc acttgccata ccattataat gatcatcggc tttttccaaa tccttgtcct
     8101 gtaaatcttt aataatttgc ttataccact cactagcact aagattgtat aaaccttcat
     8161 catttttcgt actacacgca ttaaaaaaaa cacttaaaaa aaccaataaa aaaatacctt
     8221 ttttcatact tcaccttgat ttatattctc aaaaatctat attttaacga ttttataatt
     8281 atgttcttct aaaattataa taaaattaat taaataattt aaaattttgg aatgattatt
     8341 gcttatttta tgttaaaata ttaaacatta taacttgagg agaaaacatg accctagctg
     8401 ttaaatgccc tatcttaggt tttgaagaaa ccaaaaatat ggaattttca actatcgatg
     8461 aagtatttgt aagacttaaa agtcttgatg gtaaagactt ttcttttgtt ttaattaatc
     8521 cttatttgat tagacctgat tatgaatttg atataccaac ttattatcaa gagcttcttt
     8581 ctttaacacc tgaatctaat atgaaaattt ttaatatagt agccatagca aaaagcattg
     8641 aagaatcgac agtgaatttt ctagctccag tagtcattaa tcttgataat aatactatgg
     8701 tacaagtgat actagataca gttaattatc ccgacttttt tcaagctgat caaattgcta
     8761 attatattaa aaaataatgc tctatatact tgcaaatgga tctatggcaa cagccttagc
     8821 ctatgggtta aaagatgatt atgaaatttg tatagtagga agaagtatag aaaaacttca
     8881 agccctcgcc aaagaaggct ttaaaacctt actttacaaa gattttaaca tagaaggtaa
     8941 agatgttatt ttagcattta aaccttatgc tttagaaaat attgctcaaa tgctaaaagg
     9001 acaagcacgt atcttaatct ctgttttagc caatgttgat tttgaaaaac tacaaaccat
     9061 caaagctcaa aattatgtta gaataatacc caatacagca gctaaataca aggcttcaac
     9121 cacaccatat atacttaaaa actctcattt tgaaaatgaa attttagaca ttttaaaaac
     9181 ttttggctcg gcttataaat tagataatga aatacaaatg aatgcagcta tggcgattag
     9241 cggctgcgct cctgcttttt tagcacttat agcagaaagc attgctaatg ctggagttta
     9301 tgaaggtttg tcaaaagaac ttagtctcaa tcttacgcgc tctttattta aaagctctag
     9361 tgctttacta gaacatgaac atccagctat tatcaaagaa aatatttgct cccctggcgg
     9421 agttacaata aaaggcataa aaatactcga acaaaaagga attcgcggaa gtttttttga
     9481 agccataaat gctagcagcg ctaaatgaaa aaggctttca tacttataga aagtattagt
     9541 gctataacga tcatatcttt aattttcatt ggcatttttt atcactatac tcaactttac
     9601 aaaaactatg aaaatttaaa tatttttgaa agactctata aacttcaaga agaattatat
     9661 gaaaagccca tttttaaaac catcatactt caaacttcag ccttaaaacc tatagtttta
     9721 caagaacagt ttattaatga tggtatattt caatttcaaa aattatactt tcaagatcaa
     9781 aattatagtg tttattttaa agaatgagca aagcttttac actttttgaa cttataatat
     9841 cactaatact ttttactttt ataactagct tactttcaaa atctttaatg gatttttatc
     9901 atttaaattt cactgctttg catacaaata atcttatcac tcaagcacat ttaaacttgc
//
LOCUS       DAEDTT010000059         9919 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.059, whole genome shotgun sequence.
ACCESSION   DAEDTT010000059 DAEDTT010000000
VERSION     DAEDTT010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9919
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.059"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(85..1542)
                     /gene="dcuC"
                     /locus_tag="KLC54_001115"
     CDS             complement(85..1542)
                     /gene="dcuC"
                     /locus_tag="KLC54_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
                     /protein_id="HBD9177488.1"
                     /translation="MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYI
                     TGTPIPKAPSREHASFLNVLLDSYAFITATFKSQLSGVGLIIMSVAGFAAYMKHINAS
                     AKLAFLANKPLGKIKNKYLILSGTFVVGMALKIVISSYAGLLLLLLACIYPVLISLKI
                     RPITAVCVLSLIALDYGPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVVVIAIL
                     IPFYFAWIDKRDKEKGVLNDEVEIPQIIDPRCPTFYILFPWLPVVFLFTAYFFTIKLD
                     VVTANFVSISLVFLVEFARHRNARKLGEDMMVILKAMAEIFISVVSIIIAAGVFAEGI
                     KALGGVNILANAVSNLGTGNFAWFGILLSIAILSFLVYFATVIMGSGIAAFNAFGKLA
                     PDIATKLGVAPITLVLPIEIASCLGRAASPIAGGIIALAGFAKVAPMDIIKRTTPLLL
                     IAMLVNVLVAFYLAQTNPLPKEQNTTKIAVSLNNK"
     gene            1749..4704
                     /gene="cas9"
                     /locus_tag="KLC54_001116"
                     /pseudo
     CDS             1749..4704
                     /gene="cas9"
                     /locus_tag="KLC54_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes.;
                     frameshifted; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
     gene            4701..5591
                     /gene="cas1"
                     /locus_tag="KLC54_001117"
     CDS             4701..5591
                     /gene="cas1"
                     /locus_tag="KLC54_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HBD9177489.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQVSLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFVLKKHNKIGQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            5584..6015
                     /gene="cas2"
                     /locus_tag="KLC54_001118"
     CDS             5584..6015
                     /gene="cas2"
                     /locus_tag="KLC54_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HBD9177490.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF"
     repeat_region   6161..6394
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=6161..6196
                     /rpt_unit_seq="attttaccataaagaaatttaaaaagggactaaaac"
     gene            complement(6510..7700)
                     /locus_tag="KLC54_001119"
     CDS             complement(6510..7700)
                     /locus_tag="KLC54_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HBD9177491.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILITTGGVSMGDFDFLKKAVKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNVEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEILENESLVDI
                     IFMP"
     gene            complement(7704..8150)
                     /locus_tag="KLC54_001120"
     CDS             complement(7704..8150)
                     /locus_tag="KLC54_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HBD9177492.1"
                     /translation="MKHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGG
                     IEALSFDIYEPLLKKWFDEWQKRVDFDDISLLFAHSIGDVAVHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            complement(8151..8372)
                     /locus_tag="KLC54_001121"
     CDS             complement(8151..8372)
                     /locus_tag="KLC54_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HBD9177493.1"
                     /translation="MIKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKDGDKIALLPPVCGG"
     gene            complement(8374..9915)
                     /gene="cueO"
                     /locus_tag="KLC54_001122"
     CDS             complement(8374..9915)
                     /gene="cueO"
                     /locus_tag="KLC54_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HBD9177494.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     KERIYHFEIPQDSAGTYWYHPHPHYTTSKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGK
                     SESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
BASE COUNT         3616 a         1462 c         1571 g         3270 t
ORIGIN      
        1 tatagaaaaa tttatgaaat ttttactaaa aaagcagaaa ataatttaga aaatttatag
       61 tttttataaa ataataaata tttattattt attatttaaa gatactgcta tttttgtagt
      121 gttttgttct tttggcaaag gattggtttg tgctagataa aaggctacga gtacatttac
      181 aagcatagcg ataagcaaaa gaggagtggt tcgttttata atatccattg gagctacttt
      241 tgcaaatcca gctaaagcta tgattccgcc tgctattggt gaagctgcac gacctaaaca
      301 agatgcaatt tctataggta aaactagagt aataggtgca acgcctaatt ttgtagctat
      361 atcaggagct agttttccaa aagcattaaa agcagcaatt ccacttccca taatcactgt
      421 ggcaaaataa actaaaaagc ttaaaatagc tatacttaaa agaattccaa accatgcaaa
      481 atttcctgtt ccaagatttg aaaccgcgtt agcaaggata ttaactccac caagtgcttt
      541 aatgccttca gcaaatactc cagcagcgat gattatgctt acgactgaga taaaaatttc
      601 agccatagct tttaaaatca ccatcatatc ttcgcctaat tttctagcat ttctgtgtct
      661 tgcaaattca acaagaaaaa ctaaagaaat gcttacaaaa tttgctgtta caacatcgag
      721 cttgatagta aaaaaatacg ctgtaaataa aaatacaaca ggtaaccaag gaaagagtat
      781 gtaaaaagta gggcatctag gatcaatgat ttgcggaatt tcaacttcat catttaaaac
      841 acctttttct ttatctcttt tatcaatcca agcaaaataa aaaggaatca agatggcaat
      901 aactacaaca taggcaatca cactataaat ttggtaattt aaaaaaagcc ctacgacatt
      961 atcactttgt cctaccatat ctgccatatt gattgaattt ccatcttttg gaccataatc
     1021 aagcgcaatt aaagaaagca cacatacagc tgtaatagga cggattttaa gtgagattaa
     1081 aacaggataa atacatgcta acaaaagcaa aagcaatcca gcatagctag aaatgacgat
     1141 ttttaaagcc attccaacaa caaaagttcc acttaaaatc aagtatttat ttttgatttt
     1201 tcctaagggt ttatttgcca aaaaagcaag ttttgccgaa gcattgatat gtttcatata
     1261 agcagcaaaa cctgccacac tcatgataat aagtcctact ccagaaagct gacttttaaa
     1321 agtcgctgtg ataaaagcat aactatcaag taaaacattc aaaaagcttg catgttctct
     1381 gctcggggct tttggtatag gtgttcctgt gatgtaaaaa gcaaaaataa gcaagataat
     1441 acctgaaaga aaaaatacaa aaataggatt gtatttttta agtatataat aagcaacgac
     1501 aattaccgct aaaagtgtag aacatatcat aaaaattggc atgatttctc ctaaagttat
     1561 tattagcttt tattttattt tagctaaaat ttaactaata aatatttttc atttaaaatt
     1621 ttacttattt tttgcattat aaaattaata atatgtatag tttggttact gaaaagttta
     1681 tgtttgtata aaaaatgatt tttatattat aattataaac aaattataaa tatcaaaaag
     1741 gatctagtgt ggcaagaatt ttggcatttg atataggaat aagctctatt ggctgggcat
     1801 ttagcgaaaa tgatgagtta aaagattgcg gagttaggat ttttacaaag gctgaaaatc
     1861 ctaaaacagg agaatcccta gccttaccaa gacgccttgc aagaagtgcc agaaaacgcc
     1921 ttgctagacg caaagcaagg ctaaatcact taaaacattt aatcgcaaat gagtttaagt
     1981 taaattacga agattatcaa agctttgatg aaagtttagc taaggcttat aaaggctctt
     2041 taattagccc ttatgagtta agatttagag ctttaaacga gcttttaagt aagcaagatt
     2101 ttgcaagagt gattttacat attgcaaaaa ggcgtggcta tgatgatatt aaaaataatg
     2161 gtgatgaaga aaagagcgag attttaaaag ctatcaagca aaatgaagaa aaactagtaa
     2221 attatcaaag tgtgggagag tatctttata aagagtattt tcaaaaattc aaagaaaatt
     2281 ccaaagaatt tataaatgtt agaaataaaa aagaaagtta tgaacgctgc ataacgcaaa
     2341 gttttttaaa agatgaatta aagcttattt ttcaaaaaca aagagaattt ggcttttctt
     2401 tttcaaagaa atttgaagaa gaagtgctta gtgtagcatt ttataaaagg gctttaaaag
     2461 atttttctca tttagtggga aattgtagtt tttttactga tgaaaaaaga gcgccaaaaa
     2521 attcgccttt agcttttatg tttgtagcac tcacaagaat tatcaatatt ttaaacaatc
     2581 ttaaaaatac tgaaggaatt ttatatacaa aagatgattt aaacgccctt ttaaatgaag
     2641 ttttaaaaaa cggcactcta acttataaac aaacaaaaaa gcttttgggc ttaagcgatg
     2701 attatgaatt taaaggagaa aaaggaactt attttattga gtttaaaaaa tacaaagaat
     2761 ttataaaagc cctaggtgag cataatttaa gccaagatga tttaaatgaa atagcaaaag
     2821 atatcactct tataaaagat gagattaaac ttaaaaaggc tttagcaaaa tacgatttaa
     2881 atcaaaatca aattgatagc ttaagcaaat tggaatttaa agaccattta aatataagtt
     2941 ttaaagcctt aaaacttatc actcctttaa tgcttgaagg taaaaaatac gatgaagctt
     3001 gcaatgagct taatttaaaa gtagcaatca atgaagataa aaaagacttt ttacccgcat
     3061 ttaatgaaac ttattacaaa gatgaagtaa ctaatcctgt ggttttaagg gcgattaaag
     3121 aatatagaaa aatcttaaat gccttactta aaaaatacgg taaagtgcat aaaataaaca
     3181 ttgaattagc aagagaagta ggtaaaaatc acagccaaag agctaaaata gaaaaagagc
     3241 aaaacgaaaa ctacaaggcc aaaaaagacg ccgaaattga atgtgaaaaa ctaggcttaa
     3301 aaataaatag caaaaatatt ttaaaattaa gattatttaa agaacaaaaa gaattttgtg
     3361 cttatagtgg agaaaagatt aaacttagtg atttgcaaga tgaaaaaatg cttgaaattg
     3421 accatattta cccttattct agaagttttg atgattctta tatgaataaa gttttagttt
     3481 ttaccaagca aaatcaagaa aagcttaata aaaccccctt tgaagccttt ggcaatgata
     3541 gtacaaaatg gcagaaaatt gaagttttgg caaaaaattt acctgaaaaa aagcaaaaaa
     3601 gaattttaga taaaaattac aaagacaaag agcaaaaaga ctttaaagat agaaatctaa
     3661 acgatactcg ctacatcgca aggcttgttt taaactacac taaagattat ttagattttt
     3721 tacctttaag cgatgatgaa aatacaaaat taaacgatac gcaaaaaggc tcaaaagtgc
     3781 atgtagaagc aaaaagcggt atgctaacat cggctttaag gcacacttgg ggctttagcg
     3841 ctaaggatag aaacaaccat cttcatcacg ccatcgatgc agcaattatt gcttatgcaa
     3901 acaattctat cgtaaaggct ttttcagatt ttaaaaaaga gcaagaaagc aacagtgtag
     3961 aactttatgc aaaaaaaatt agtgaattag attataaaaa caaaaggaag ttttttgagc
     4021 cttttagtgg ttttaggcaa aaggttttag ataaaattga tgaaattttt gtctcaaaac
     4081 ctgagagaaa aaagccaagt ggagctttac atgaagaaac atttagaaaa gaagaagaat
     4141 tctatcaatc atacggcgga aaagaaggag ttttaaaagc cctagagctt ggtaaaatcc
     4201 gcaaagtaaa tggtaaaatt gttaaaaatg gcgatatgtt tagagtggat atttttaaac
     4261 acaaaaagac aaataaattt ttatgctgtg ccaatttata ctatggattt tgctttaaaa
     4321 gtattaccaa ataaagctgt agcgcgaagt aaaaaaggtg agataaaaga ctggatttta
     4381 atggatgaaa attatgagtt ttgcttttct ttatacaaag atagtttgat tttaattcaa
     4441 actaaagata tgcaagagcc agaacttgtt tattttaatg cttttacaag ctctactgtt
     4501 agtttgattg tttcaaaaca cgataataaa tttgaaacgc taagcaaaaa tcaaaaaata
     4561 ttgtttaaaa atgcaaatga aaaagaagta atcgcaaaaa gcataggaat tcaaaatcta
     4621 aaagtatttg aaaaatacat agtttcagca cttggagaag tgacaaaggc tgagtttaga
     4681 caaagagaag attttaaaaa atgagttacg atgaagcttt taaaacactg cttattagct
     4741 ctaatgccaa gctaaattta gagctaaatc atcttgtgat taagcaagat gaaaatatag
     4801 ccaaattgtt tttaaaggat ataaacatca tcgttttaga aagcttacaa gtaagcctta
     4861 gttccgcact ttttaacgct tttgcaaggc ataaaattat cttattaacc tgcgatgaaa
     4921 ctcatagtat aaatggtgtt tttactcctt ttttagggca ttttcaaagt gcaaaaatcg
     4981 caaaagagca aatgaatgta agtgctcaaa aaaaggctat tttatggcaa aaaatcatta
     5041 aaaacaaaat cctaaatcaa gcctttgttt tgaaaaaaca caataaaata gggcaaagca
     5101 atgagcttat aaatttggct aaaaaagtaa gcttaaatga tagtaaaaat atcgaagctg
     5161 ttgcagcggc gctttatttt aaaactttgt ttggcgtttc tttttcaaga gatgagcttt
     5221 gctttgaaaa ttctgcttta aattatggct atgcaatcat tagggcttgt attattagag
     5281 cagtttgtat aagtgggctt ttgccttggc ttggcataaa gcacgataat atttataatt
     5341 cttttgcact ttgtgatgat ttgatagaag tttttagggc tagtgttgat gattgtgttt
     5401 taaagcttaa gggtgaaagt gagtttttaa gcaaagatga caaaagagcg ttgattggca
     5461 atttacaaag caaaatcaat tttgatgggc aaaattatcc tttaaacaga gcgataaatc
     5521 attatgtggc gaattttaaa aatgctttat tgtatgaaga tgagctaaag atagtgaaat
     5581 ttgatgattg aagataaatt tatgcgcgtg cttttgatgt ttgatgtacc tactaaaagt
     5641 aaaaaagagc aaaaactagc aagtaaattt agaaacaatc ttataaaatt aggttatttt
     5701 atgctgcaat ttagcgttta tatgcgtatt tgcaagggtt taagttctgc aaaaagttct
     5761 attgaaaatg taaaaaagat tttgccacct tatggaaatg taagggcttt aatcatcact
     5821 gaaaagcaat ttgataaaat ggagcttttg cttggtggca tagtttttaa tgaaaaagtt
     5881 aataacgaaa ctaatttaac gctttttgat atagatagtc atggagaatt taaatacaaa
     5941 aattcaaata atgaagaaat acaactaaac aaaaaacaag aaaaatatca tcagcaaaat
     6001 ttatttgaat tttaaaagcg gttttagggg attgtaaccc cgcagagtcc cgcaaactct
     6061 ttattttagt ccctttttaa atttcttatt gagattatag cataattttt gctatttttc
     6121 atgaaaaaac cccgaaattt tcattatctg gtaaatatct attttaccat aaagaaattt
     6181 aaaaagggac taaaacaaaa tcaaattttt tatatacctt gcaaatattt taccataaag
     6241 aaatttaaaa agggactaaa actccaaagc gttttaaagc atttcctaaa gcattttacc
     6301 ataaagaaat ttaaaaaggg actaaaacaa gccaacttga tgggttacta ataaatcaat
     6361 tttaccataa agaaatttaa aaagggacta aaaaccctag tggattgaaa ctctgctagg
     6421 gctaattact tcactaaaag gaggtgcaaa tttgaaactt attgaaattt agggttgatt
     6481 aaaatcgaaa taaaattatt taaataattt taaggcataa agataatatc tactaaactt
     6541 tcattttcta aaatttcaca ttcttttggt actaccataa gggcagcttt attgttaaga
     6601 ttgtttataa tcgcactaga gccttctttc ttaccttcaa gattggctaa aatgcgtcca
     6661 tttttaaatt ccacattaca agcgacaaat tccaaataag gtgttttttt cttgtagctt
     6721 ccttgtaaaa aggctttgca aatatagtct ttaggctgaa gtaaccaaga gtttaaaatc
     6781 tctcttgcgt aaagattaaa cattaccata gccgagtaag gaaaacctgg taaggcgatg
     6841 atgaattttt cattagcctt ggctattttg atatgtctac ctggttttat gtcggcttta
     6901 tcgatgatga tttcgtattc ttttacagct ttttttaaaa agtcaaaatc tcccatagaa
     6961 actccgcctg ttgtaatcaa aatatcacaa ctttgcaaag cactttcaag ggtagaaaaa
     7021 gtggcttttt catcatcttt taaaagtgga aaaacccttg tatcgcaatt taaattttta
     7081 gctaaattag ctatggcgat atgatttgaa gagcggattt gagcaggatt ttccaaggct
     7141 tctcctagat ctttgatctc acttccacta cttaaaaccc ctacaatagg ctttataaac
     7201 acactaatgt gaaaaaatcc aagttcagcc aaaagagcta tttcgctata atttaacttt
     7261 gtgccttttt tgagtaaaat ttcatctttt ttatagtttt ctcctactgc acgcacggca
     7321 aaagcttggg gaactttttt ttctataaaa agagtatcat tttctacgcg tacattttca
     7381 acagggacta aagtatcact tccttcactc ataagtgaac ctgtaaaggt ttttacacaa
     7441 gtaccatttt gcacgctaaa ttgtggcata gtgcctgcag gtgtgaggcc taaaattttt
     7501 aaaggcttat cttgatcttc aaatttgatc gcataaccat ccatagccga agttggaaat
     7561 tcaggctgat ttttaggggc ttttatgtct tgagctaaaa tgcgtcctaa acactctgta
     7621 agagctattt tttcaatctt ttcataagtt ttgatatgag agtgtaaaat ttttaaactt
     7681 tcttcataag acattaacat tttttatcct tttaaaagtc ctgcaccgca aagtttggtt
     7741 gatctttctt tggcataaat tctttctttg tttatcacat catacttcca aataggtgca
     7801 cttgctttaa aatcttcaac aaattcatta agaagtttaa gtcctaattt tctttgtttg
     7861 cttaaaattc ctgcaaaata agagctttca tgaaccgcca catcgcctat agagtgagca
     7921 aaaagcaagc taatatcatc aaaatctact cttttttgcc actcatcaaa ccattttttt
     7981 aaaagcggtt cataaatatc aaaactaagt gcctcaatgc ctccttcttc acgcacaata
     8041 ccacaaaaag tcagcaaagc accgcagttt ttatccttgg caaattcata ccattggcta
     8101 taaattttag gaatatctaa agaaccttga tagagtgtaa aatgtttcat ttaaccccca
     8161 caaactggcg gtaaaagtgc tattttatca ccatctttta acttagtgtt ttcatcaaaa
     8221 atgatttcat cgtttaaaga tacggcacaa agttctagcc attcttttaa actctcatct
     8281 ttttgcaaaa tttcttttaa ttcttttaaa ttttttacct caagctctaa attttcttta
     8341 tttatggggc ctaaaaattc cacttttatc attttattcc tttacttcta aatttcccat
     8401 cattcctaaa tcttcatgtt ctaaaatatg acaatgatac attctaagtc ctttaaaatc
     8461 ttgtttcatt ctaagtctta actcttcatt aggacgcaca tttatagtat ctcttaaggc
     8521 tctaaattcg gctttttgaa ctttgccatt gagttttgat gagatgagtt caaattgcgt
     8581 gccgtgtatg tggaaaggat gatccatgtg agatttgttt atcactatcc agtcttcaac
     8641 tactccaagt ttggagctta aatcaatgcg ttttaaatca tagcttttgc cattgattaa
     8701 aaacatagac gcaagagcga tttttaattc gctttcactt tttcccatca taccatgcat
     8761 ttgcatatga tcttcactca tgattatttc tttaaattcc ttaggttctt ctgaaggttt
     8821 gaaaattttt aaattttttg gaagttctac attttctttt tttagactaa tattagctaa
     8881 aaatagggta ttaggttctt cttttaccat cattttatcc ctatcataat aagcactttc
     8941 tagcttaaaa ttcccatctt ttggagcgtc gattaaaact tctacgcgag aagcaggact
     9001 taagaaaagt tcttctttat aaatagcttt ttctataagt ccaccatcag taccaacaag
     9061 tataaactta gctccttgta tgcgtaaatt taaatatctt gctgcagtag cattataaat
     9121 gcgtatgcgt tcgtttgtgg cgagtttgat tttaggttta aattgtccat taatgagtac
     9181 aaattctcct tctctaccat ttagccaatc atttaggttg ttgttcggaa tttgagcgtt
     9241 ttcatcaaga cgcaaatcgc taatcatcaa atctttttct tttaaatgac ttaaagcatc
     9301 tttttttgct ttgatcacaa aagcccctgc taagcccata aaaacttgtt tagaagtggt
     9361 ataatgaggg tgtggatgat accagtaagt tcctgcgcta tcttgaggaa tttcaaaatg
     9421 atatattctt tcttttcctg ctaagatagg atcatgtggg cttccatctt gatcaggtgg
     9481 cacaggaacg ccatgccaat gtatagttgt agcttccttg agtttgtttt tgactaaaat
     9541 ttcaagttta tctccttcaa aaacttctat ttttggagca ggtactagac cattgtaagt
     9601 ataaaataag gtttttttac ctttgataag ctctatatga ttttctttga tttctagggt
     9661 agcacgaaaa atattttttt ctttactttc atttttgagc aaaggcaagg cttttaaaat
     9721 ttctccttgg gggaattgtt ttggatctaa aagttttaaa ttttttggag caaagttgat
     9781 aaaagaagta tctaagtcat gatttataga atgattttta tgcatagagt gcatatcgtg
     9841 cataggattt gcataggcta cacccatact tgctagagta agtgcattaa attttaaaaa
     9901 atttcttcta ttcattagt
//
LOCUS       DAEDTT010000060         9752 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.060, whole genome shotgun sequence.
ACCESSION   DAEDTT010000060 DAEDTT010000000
VERSION     DAEDTT010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9752
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.060"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1405
                     /gene="aspA"
                     /locus_tag="KLC54_001123"
     CDS             <1..1405
                     /gene="aspA"
                     /locus_tag="KLC54_001123"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HBD9177495.1"
                     /translation="GTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPRF
                     VRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTST
                     NMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDLA
                     KAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEAR
                     KLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQI
                     SGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVNQ
                     VCYFVIGADVTVTFACEGGQLQLNVFEPVAAYSLFNSIVMLEKAMYTLADKCIDGITA
                     NEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQID
                     EILTPSNMLNPHMEAKK"
     gene            1422..2759
                     /locus_tag="KLC54_001124"
     CDS             1422..2759
                     /locus_tag="KLC54_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HBD9177496.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFIACMLTAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     ILHGEDKPGAKLSVGIFLITVLAVVLYATAISSNIKWIDPVVVPRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVALGFVLAPMLI"
     gene            2867..4228
                     /locus_tag="KLC54_001125"
     CDS             2867..4228
                     /locus_tag="KLC54_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3014 family protein"
                     /protein_id="HBD9177497.1"
                     /translation="MKIKVGLIFSGIVCLFLTACVNQVKQNTTFENALTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAAEESYKYDVDLENVGSKAA
                     KFVGTTLLNDTIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRALMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLLREVAIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVVVRSFAPYLPASVAI
                     MEK"
     gene            4238..4606
                     /locus_tag="KLC54_001126"
     CDS             4238..4606
                     /locus_tag="KLC54_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HBD9177498.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDLIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLASDTRAKDFRLEIKAKN"
     gene            4630..5253
                     /gene="lpoB"
                     /locus_tag="KLC54_001127"
     CDS             4630..5253
                     /gene="lpoB"
                     /locus_tag="KLC54_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HBD9177499.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQVKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5335..6672
                     /locus_tag="KLC54_001128"
     CDS             5335..6672
                     /locus_tag="KLC54_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177500.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINTQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNITNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLANTNEALNSKSNTTKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6682..7884
                     /locus_tag="KLC54_001129"
     CDS             6682..7884
                     /locus_tag="KLC54_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177501.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDANGKYTANVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDSSGYYEMEKALIKSGDAASDEVYKLKNVLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANEAALK
                     QIANRIAGDILNAIYPLKVASVENNEVVFSQSLNQGDVYECFALGKAIKDTYTKENIG
                     RVENKTGSIEITRTSPKLSYAKITEGGVKVGDICRPLIGSNSGNGYTIGRDANYQTEE
                     GGGVNLGF"
     gene            8043..8351
                     /gene="rplU"
                     /locus_tag="KLC54_001130"
     CDS             8043..8351
                     /gene="rplU"
                     /locus_tag="KLC54_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HBD9177502.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8362..8616
                     /gene="rpmA"
                     /locus_tag="KLC54_001131"
     CDS             8362..8616
                     /gene="rpmA"
                     /locus_tag="KLC54_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HBD9177503.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8725..>9752
                     /gene="obgE"
                     /locus_tag="KLC54_001132"
     CDS             8725..>9752
                     /gene="obgE"
                     /locus_tag="KLC54_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HBD9177504.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDAQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVDEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVNLGEEFAEQITLNINELENYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLR"
BASE COUNT         3529 a         1311 c         1856 g         3056 t
ORIGIN      
        1 gggaacaaga aaagaacatg attttattgg ggaattagaa atctctgatg aggtttatta
       61 tggagtgcaa acttttagag ctgttgaaaa ttttgatatt tctcatgata gattaaaaga
      121 ttttcctcgc tttgttagag ctttggctag agtaaaaaaa gctgcagcta tggcaaatca
      181 tgaattaggt cttttagata aaaatatcca agatgcgatt attaaagcgt gcgataaaat
      241 tttagaaggc gggtattatg atcaatttgt agtagatatg atccaaggag gtgctggaac
      301 aagtacaaat atgaatgcta atgaagttat agcgaacata ggacttgaac ttatgggtca
      361 taaaaaaggt gaataccaat atcttcatcc aaatgatcat gttaatttaa gtcaaagtac
      421 taatgatgct tatcctacag ctttacacct tgccttgcat gattatttaa gtgatttggc
      481 aaaagctatg gaacatctaa aaaaagctta tgagagaaaa gctgaagaat ttaaagatgt
      541 tcttaaaatg ggtagaaccc aactgcaaga tgctgtacct atgactttag gtcgtgaatt
      601 taaaactttt gctgtaatga taggcgaaga tatacaaaga gtattagaag ctagaaaatt
      661 aattttagag atcaatttgg gtggaactgc tattggaacg ggaattaatt ctcatcctga
      721 ttatccgaag gttgtagaaa gaaaaataag agaagtgaca ggttttgaat atactgtggc
      781 tgaggatttg atcgaggcga ctcaagatac gggagcttat gtacaaattt caggtgtttt
      841 aaaacgtgtt gcaacaaaac tttctaaagt atgtaatgac ttaagacttt taagcagtgg
      901 tccaaaatgt ggtcttaatg agattaatct tccaaaaatg caaccaggta gttctattat
      961 gccaggtaag gtaaatcctg ttattcctga agtagttaat caagtttgtt attttgttat
     1021 tggagcagat gtaactgtaa cttttgcttg tgagggtgga caattacaac ttaatgtttt
     1081 tgaaccagtt gcagcgtata gcttatttaa ttctattgta atgctagaaa aagcaatgta
     1141 tactttagct gataaatgta tagatggtat tactgcaaat gaaaaaattt gttcagactt
     1201 cgtctataat tcagtaggta tagtaacagc tttaaatcct tatattggtt atgaaaattc
     1261 agcttctata gctaaagagg caatgaatac tggaaaaaga gtggctgata ttgcgcttga
     1321 aagagggctt ttaagtaaag aacaaattga tgaaatttta actccatcaa atatgctaaa
     1381 tcctcacatg gaagctaaaa aatagcattt taggatttaa tatggatata atgataattt
     1441 tgcaagtaat cgtccttctt ggggcgattt ttatcggtat tcgcctaggc ggtattgcta
     1501 taggttatgc tggaggatta ggtgtagtta tactaggact tgttttaggt atgaaacctg
     1561 gtaatattcc ttgggatgtt attttaatta ttgctgcagc tattgcagca atttctgcta
     1621 tgcaacaagc aggtggactt gattatatgg taagggtgac agaaaaaatt ttaagatcaa
     1681 gccctaaatt tataaattat ttagctccag cttgtggatg gttgcttaca atcttagcag
     1741 gaacaggaaa tgcagtattt tctttaatgc ctgttgtagt tgatgttgca aaatctcaaa
     1801 atataaaacc tagtgttcca ctttcattaa tggttgtttc ttcgcaaatt ggaatcactg
     1861 cttctcctgt gagtgcagct gtggtttata tgagtggcgt tttagagcca cttggatgga
     1921 attatccaac tttaattgga atttggatca gtacaacttt tatagcttgt atgcttacag
     1981 cttttatagt gagtttaatc actcctatgg atttaagcaa agatagcgtt tatcaagaac
     2041 gcttaaaagc aggacttgtt aaagatgcag gagctatttt acatggtgaa gataaaccag
     2101 gtgctaaact ttcagtagga attttcttga tcactgtttt ggcagttgta ctttatgcaa
     2161 ccgcaatttc aagcaatatt aaatggattg atcctgttgt ggttccaaga gatgcagcta
     2221 ttatgagctt tttacttact gcagcaactt tgatcacttg gctttgtaaa gttgaaccag
     2281 gtaaaattct tgataccagc gtatttaaaa gtggtatgac tgcttgtgtt tgtgtttttg
     2341 gtgtagcatg gcttggaaat acttttgttg caggacacga agcttctatt aaagaagtag
     2401 caggcgactg ggttaaacaa acccctgcta tgttagcagt tgcatttttc tttgcaagca
     2461 tgcttttata ttctcaagca gcaaccgcaa aggccattgt acctgtaatt atcactgctt
     2521 taggaatttc agcagcaaat ccgcatgatt cttatatgct tgtagcttgt tttgcagcag
     2581 tttcggcact ttttgtgctt ccaacttatc caaccttact cggtgctgtg caaatggatg
     2641 atacaggaac gactagaatt ggtaaattta tatttaatca ctctttcttt ataccaggag
     2701 ttttagctat tgcaattgct gtagcattag gctttgtatt agctcctatg cttatttaaa
     2761 tcaaacccta ggtttttctc tcctagggtt aaaatttttt cattagtttt taagtatata
     2821 ctacgctata atattcattt ttaattttct ttaagaaagg aatttaatga agataaaagt
     2881 tgggttgatt ttttcaggta ttgtttgcct ttttttaaca gcttgtgtta atcaggttaa
     2941 acaaaataca acatttgaaa atgctttaac acaaaaatat tgtggtgatg attttttcaa
     3001 tcaaaattta gaaaaaatta aaaaaaatga tgatgtcatt tatacaggat taaatgcagg
     3061 tttgattgct agaaattgtg gtgattttaa caaaagtaat gtattttttg atgctgcgga
     3121 agaatcttat aaatatgatg tggatttaga aaatgtaggc tctaaagcag ctaaatttgt
     3181 tggtacaacc ttgcttaatg atactatagt tgattatgat ggttctttat atgaaagaat
     3241 tatggttaat atatataaag ctctaaacta tatggaagaa gatgattatg aaaatgcaag
     3301 agttgagttt aatcgtgctt taatgcgtca agataaggca aaagaatatt ttgctaaaga
     3361 aattgagaaa aatcgtgctg atttagataa ggcaaaagaa gataaaaatt atgataaaaa
     3421 tatgaatgaa aactcaaaag ttatagaagc acaatacgat aacttgttta aagagtttga
     3481 tacaacaaaa aatttcataa atccttatgc gacttatctt gcttcaatat ttttctttat
     3541 ggataaagat tatagaaaag ctgcagattt attgagagaa gtagctatta tttatccaaa
     3601 aaataaaact atcaaaaaag aggctaaaat ttttaaagaa tatgccacaa aaataaaagt
     3661 caaaaaagct aaaaaatatg tttttgtagt ttatgaaaat ggatttggtg tagttaagga
     3721 tgaatttgct ttaaccttac cttttatagt ggataaaaaa attattagca caaatattgc
     3781 tttacaaacc ttgaaaaaaa gggaagcttc ttttgcaaat ttaaatataa atggtcaaaa
     3841 tacaaatgat tttgtagatt tagacaatat tgttgctact gaatttaaaa taaatatgcc
     3901 tgcaatgatt gctaaagcct tagctcaaac tataattaaa accactttaa atgtagctgt
     3961 tgcaaataat gactctacag gtggatggct aagtcttgca acagcagtag caactgctgc
     4021 aaccaacaaa gctgatgtgc gttcttggag aggtttgcca aaaagtattg ccatagcaac
     4081 aatagaaaac gacggaaatt tagaaatcaa agatccacaa ggcaatattt tgtttcaaaa
     4141 atcattggat aaaaataaaa atgctcttgt tgtagtgcgt tcttttgctc cgtatttacc
     4201 tgcaagtgtt gctatcatgg aaaaataagg ctaaaagatg aaaaaaaata ttttatttat
     4261 tttaatgttt ttacttagtg cttgtgcgcc aagttatcaa ataaattcaa atcaaaatac
     4321 tgtaatttta ggttcaaatt taccaaaaag tttagtaaaa cagtttcaaa agcgtataaa
     4381 tagcaatggt tatttagaat ttgaagtgat tttacgcagt acttttgcta aagatttaat
     4441 ttataaagtg gattggttag ataaagatgg ttttgtgcta agagatgttt taaatgagga
     4501 ctatcaagcc cttagaattc cagcaggaca agaggtgatt cttcgtaaac ttgcatctga
     4561 tacaagagcg aaggatttta gattagaaat taaagcaaaa aattaatctc attttaggaa
     4621 ggataaatca tgaaaaaaac aaaaatttta ggaacagctc ttattggagc tttgcttttt
     4681 agtggttgtg cgcaaacagc ttatacagat ggaaaggcaa gtcaagtgaa aaaaggcgat
     4741 gctttaacct tgggtcttga tagacaagat tttgaaagtg cagctgaaac tatgataaat
     4801 agtatgttaa gcgatcctgc ttttgcaaat attaaaccag gtacaagaaa ggttattgct
     4861 attggtaggg ttgtgaatga taccccgcaa agaatcgata ctgaaaaact taccgcaaaa
     4921 atcacttctg cattaagaaa atcaggtaaa tttgttctaa cttcagcagt tgctgcaggc
     4981 ggagcacttg atagcatgag tgaagatgta agagaattaa gagataatga tgagtttaat
     5041 caaaaaacca tagcaaaaaa agggacattg gtatcgcctg atttttctct tgcgggtaaa
     5101 attagacaag ataatgtaaa acttagcaat ggtaaaactc aagtagaata ctttttcttg
     5161 ttaagactta ctgatctaac atcaggttta gtttattggg aagatgagca aactattgat
     5221 aaaaccggtt ctagtaaatc agttacttgg taaaataaaa attaatttat gaataaaatt
     5281 tttagctcaa gtgtttagct tgagcttttt ttatgatttt taaaaggata tgaaatgaaa
     5341 aaaatattat ttatcggctc tttagttatg gcaagtttac tttatgcaca aggttcccag
     5401 cctgtagaaa ttacacaaca agatataaat actcaaaatg aaatgtctga tgcaagcact
     5461 aaggatatta ccccaaaatc aattgaagat ttttttgaag aatttgcgga taatttcggt
     5521 atagaatatg gtataaccaa agatggaaaa actttttata caggaaaaag tactgttgct
     5581 gtaaatgata ctgatccaca atttgcacaa gctttacaaa atgcttatca aaaagcaatg
     5641 ttaaatttac aaagcgaatt tataagagat gcttttggaa gaattgctac aagcaagatt
     5701 caaaattatg aagcagataa ttctactaat gctaaggaat ttgatgaatt gccaaaaggt
     5761 gataaggttg atcaaatttt aaataaactt acacaattag ctggtgctca gcttgataag
     5821 gcattaaaag atttaggtat agatacaaat tctttaagcg aagacagaaa aaagacttta
     5881 ttaaagcaag aatttcttaa taaaaccatg acaaatgcca taggttctat gagtggactt
     5941 gttcctgtgc aaactatagt tacacaaaga agaggtgagt atgatgtagg tgttattgct
     6001 gttatttcca ataaaactcg ccaattagca aaagatatgg cactagcaag acagagtgct
     6061 attaagggta aaggcaaggc aataagtgag tatctgccaa aagatacaaa aggcttttta
     6121 aatgaatatg gaattcgctt agtttatgat gaaaatggtg cgcctattat tttaagttat
     6181 ggaaactggg gttatgtagc agatcctagc aatgctaaaa aaacaaatat tttagaagat
     6241 agagccaaag aaacagcact tactatggct gatgctgcta ttatagagtt tattaataca
     6301 aatttaagtc ttaaagatga aagaacaact ggtgatactt acgaggaaat catcaaacaa
     6361 agtattaatg ttaatgatag ttccactcaa gaacaaactc aaaacataac aaatattatt
     6421 gataaagtaa atagtaaaat aaaagcaagc gcaagcggta aaattcgtgg tattcgtact
     6481 cttaaaaaat ggagttatac aagtgaaaat ggtattgaac atgtaggagc tgtgagattt
     6541 tattcttatg aaaatttagc taacacaaat gaggctttaa attcaaagtc aaatacaaca
     6601 aaaaatgaag ctaaaaaatc ttctagcata caaagaagct ctaatgttgt aaatagcatg
     6661 gatgattttt aaaggtaaaa gatgaaaata attaaaattc tttttttagg cttattttta
     6721 agcctaagtc ttaatgctaa agttataacc acaacttcaa caaaatcaag cacaggcgaa
     6781 ggcacaggct tgactaggga agatgcgata aacaatgcca ttatagaagc tataggaaaa
     6841 atgagcggag taagcatcaa ttctcttaag aaatctaaca ctagtgtttc aactgataat
     6901 tcaggttcaa acatacaaga taattacagc gagcaaattt caaaagccac caaaggtaga
     6961 gccgatactt atgaaatcaa tagtgttgaa caagatgcaa atggtaaata tacagccaat
     7021 gtaacgattt ttaaaaccac aacaacaaaa aagtatcaag ctccaggttt aagtgcagat
     7081 aatagaagaa gtattactgt ttttgattct actccagatg ctgcaaaaag aggtataggc
     7141 tcagctttgc aacaaaaaat catttccgat ttattgcaaa gtcgtaaatt taatgtttta
     7201 gaccgtgatt ctagtggcta ttatgaaatg gaaaaagctt taatcaaaag tggcgacgca
     7261 gctagcgatg aagtttataa acttaaaaat gtgttagcaa cagattatat tttattgttt
     7321 tctatttcag gacttgaagg taaacaaaaa acaagcaatt taacaggaaa aagcaaaact
     7381 gaaattgaag ttatcgtaga ttatcgtgtg cttttatttg ctacaagaca aattaaattt
     7441 tctaatactt taagtatgaa agtcaatctt aaagacaata gtcttagtgc caatgaagct
     7501 gcactcaaac aaattgcaaa tcgtattgca ggagatattt taaatgcaat ttatcctttg
     7561 aaagttgcaa gcgttgaaaa caatgaagta gtattttctc aaagcttaaa tcaaggtgat
     7621 gtttatgaat gttttgctct tggcaaggct ataaaagata cttatacaaa agaaaatata
     7681 ggaagagtag aaaacaaaac aggaagtatt gaaatcactc gcacaagccc taaactttct
     7741 tatgcaaaaa tcacagaagg tggtgtaaaa gtgggcgata tttgtagacc tttaattggt
     7801 agcaatagtg gaaatggcta cactataggt cgtgatgcaa attatcaaac cgaagaaggt
     7861 ggcggagtaa atctgggatt ttaaattttt agagtttgat ttttctcaaa ctctaaatcc
     7921 tttcttaaat tcatcaaaaa ttaaagaaaa attttgtaaa atcgaaattt tattaaacca
     7981 ctaaagcttt taaatccgtt attgcggtgc tttatggtac taccaattta taaggaaaag
     8041 caatgtatgc tattatcaaa cacagcggaa agcaatacaa agtaagtgtt ggcgatgagc
     8101 taaaactaga tcactttgaa gctgaaagca aagcaagtat tgaagtaagc gaagttcttg
     8161 ctatcaatga taaagaatta aaggtaggtg cgcctttcgt agcaggtgca aaagttgttt
     8221 tggaagtgat caatcacgga aaagataaaa aagttgtgat ttacaaaaaa agacgcagaa
     8281 aagattctaa actcaaacgc ggttttagaa gacaatttac tcgcgttgta gtaaaagata
     8341 tcaaagctta aggagtaaag aatggcacac aagaaaggtc aaggttcaac tcaaaataac
     8401 cgcgattcta taggtcgtcg tttaggtgtt aaaaaatttg gtggcgagtt tgttagagct
     8461 ggaaatatca tcatccgcca aagaggaact gcaactcatg caggtaacaa tgtaggtatg
     8521 gggaaagatc atactatctt tgctttgatt gatggttttg taaaattcga aagaaaagat
     8581 aaagatagaa aaaaagtttc tgtataccct gcataagttt ttaggacgct tttttagcgt
     8641 cttgaaaact ttaaatttat aaatttaact tctttttatt tactcaaatt tagctttata
     8701 aatttaaagt caaaggcaat ttaaatgttt attgatagtg ttaaaattac tttagcttca
     8761 ggcgatggtg gtaaaggtgc tgtaagtttt cgtcgtgaaa aacatgttcc acttggtggc
     8821 cctgatgggg gagatggtgg aaatggtggc gatattattt tcgtatgtga taataatacc
     8881 cacactcttg taaatttcaa aggcaaaaga gaattacgcg cacaaaatgg tgctggtgga
     8941 atgggacgca ataaaaatgg caaaaaaggt gaaaatttag aacttatagt acccgaagga
     9001 acgcaagtta tcgatgcaca aactaatgaa attttactcg atcttaccaa agaaggacaa
     9061 agagagcttt ttttaaaagg tggaaaaggc ggacttggca acactcattt taaacacgcc
     9121 accaatcaac gccccgatta cgcacaacct ggtataaaag gagaaagtcg cttagtcaga
     9181 cttgaactta aacttattgc cgatgtaggg cttgtaggtt ttccaaatgt aggaaaatct
     9241 actcttataa gcgttgtttc aaatgcaaaa cctgaaattg caaattatga atttactacc
     9301 cttactccaa aacttggact cgtggatgta gatgagtata attcctttgt tatggctgat
     9361 attccaggga ttatcgaagg agcaagtggg ggtaaaggct taggacttgc ctttttaaag
     9421 cacatagaaa gaacgagctt tttacttttc gtgctagatc ctatgaggca aatgccttta
     9481 aaagaacaat ttatagtact aagaaaagaa cttgaaaaat tttccaatga actttttggg
     9541 cgtaaatttg gtatcatgat ttcaaaaagt gatagtgtta atttaggaga agaatttgcc
     9601 gagcaaatta ctttaaacat taatgagtta gaaaattatc tcaaagaaat aaataaccca
     9661 caaagctttt taatcaaagt ctcaagcctt gaaaaaacag gacttaaaga acttaaattc
     9721 atgcttttag aagaaattaa aactttaaga aa
//
LOCUS       DAEDTT010000061         9407 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.061, whole genome shotgun sequence.
ACCESSION   DAEDTT010000061 DAEDTT010000000
VERSION     DAEDTT010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9407
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.061"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            245..2215
                     /locus_tag="KLC54_001133"
     CDS             245..2215
                     /locus_tag="KLC54_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
                     /protein_id="HBD9177505.1"
                     /translation="MKKLISKGKVLTLLLGVGFALNVSSAENSNVLIQGEAAQDGDTK
                     PRTLEGYVHQEDAFFKYLKEHHPMFKYEKEGRIVGKYAISDREEEYVEFSNGPTFAQQ
                     NNLAHTSVTYRLGMESFLDFPNKFVGPKKCGECHPAQYKAWERSRHAKTVRFPDEFEE
                     VGNDLKKPMYNSQSTILPDGIYPDDVYAVIGTPRTKYGFIDRWLVRGTYHVEDGNLSN
                     MTGKIVAGGNQFSRLWSEFLTPEMTKKIAEFSPGFPTTMEQFGGNGSQVWGTNSYAAQ
                     YRKNMLFQPASSYCETCHSFKFDFKSKEEFYKALGNTQELRKHTISKGISCEECHGAG
                     AHLYGARGAGMPSNCERCHQRFSYNEEDAKKNPRKPFNAFFKSSCPACGTEGAQMYSS
                     AHYDKGMRCSTCHDPHEVTFNDWKDGYTKVGLKKTCTDCHDTQASFFKQGGIHSKDNC
                     TACHMPNMMSCENFGAVQNPDKGGFDNVRASHIWKIKVDKTAKTLNPPEGKERSPKTP
                     GWTIARDDDGRFFLDLMWACGRTSFSDPNLMGPGASGCHSAVQSNLPKKLHFTDQETI
                     YDIVVGWQKPVKDGYENILKGVKEIDKAMAENPKLSVEKKSRVITLANQARAIAEKLQ
                     KDGSWGVHGPVYSKKIVDEALVYIQEAKNILK"
     gene            2256..4325
                     /locus_tag="KLC54_001134"
     CDS             2256..4325
                     /locus_tag="KLC54_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177506.1"
                     /translation="MKQSLIKFILLAVFCFSTPFLLADGKIQIGIVEGVTPISMKDAE
                     KLLGQKNVYFVDVNSKEEREVAGNIPNAVLVDAQNWQNLLPDDFNATLIFYGSNRFTF
                     DASNIANLSQKLGYTHVYVMLDGIESWVLSGRKVQKEQIEKWQNAKNLDDFKDSIHSR
                     MYFGDVPSCRDCHGKGEDKKSIRYNNAANLDLINKNCASCHKDVDKEFKHSIHQNISQ
                     IQLDKDGKKKKIPTCTTCHDIHNNDPLMNAMTLKQRSDFKCGECHQDKQDRYHDTFHG
                     KAMVLNSPGSAPKIAACYDCHGKHNILKVEDLNSTLSSLNRVQTCAQCHPNSNENFAN
                     FIAHADHSDGENYPLLHGAYIFMTALVIGVFVFFGLHTLLWSIRLILARFSHPAEWKK
                     AKENAHNDKVLIKRFSTFHKIQHFFMAASFLGLAFSGLPQKFYTAPWAQTMIDLIGGP
                     IGATIVHHISAIVMFIVFFSHIGEIILVNWKRRDLVRDPQTGKLDKMKILKALFGPDS
                     LMPNWQDFKDMKAHFKWFFGMGERPQFDRWTYWEKFDYLAVFWGMFVIGLSGLVLWFP
                     TFFSTFLPGWMINLCSLVHSDEALLATGFIFAIHFFNTHFRADRFPMDMVIFSGTQSE
                     AEIKQERNAYYQRLKESGKLESLYEKNSKFNSYKGIAKLAGYLMLITGMIFLFLMIYA
                     FIVDLLK"
     gene            4369..4953
                     /locus_tag="KLC54_001135"
     CDS             4369..4953
                     /locus_tag="KLC54_001135"
                     /inference="COORDINATES: protein motif:HMM:NF024498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HBD9177507.1"
                     /translation="MLKKLILGFIILLFCACNDEKIDENILSKGTKTTEQYKQDTNNL
                     DLNSYKEIAEFFKDNQNIVFSDKPVLIIFSANNCVYCDKLKHEIQNNKEVQNILKNTY
                     NSYYINTSYHKIHNYDNKKTSTEELSREFNIDATPTLVFFTPKHKTLLIYPGFMSAKR
                     LALTMEILKDEKNQKLNEDELFKTLFLAYKEKNV"
     gene            4946..7651
                     /gene="ccsA"
                     /locus_tag="KLC54_001136"
     CDS             4946..7651
                     /gene="ccsA"
                     /locus_tag="KLC54_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HBD9177508.1"
                     /translation="MFKKIFFSFWMSLILLFIYALSCAVATFVENDFGTNAAKALVYN
                     ALWFDILHLLLLINLIGIIFIHKLLQRKKYASLLLHSAFIVILLGAAITRYFGIEGGM
                     HIREGQSSDIIVTRDEFIALMLYNDEGKVIEYQSFGVAFNPLLHNSFEKKVSMQQNKT
                     INLKLLDYEKAPNAMSNPIIKMQISFNNESKEILLTPNYNNENVLPFRLGGEIFALNW
                     GPEEIKLPFSLALKDFILDRYAGSMSPSSYASDIEVIDQDKSFEYKIFMNNVLDYGGY
                     RFFQSSYDQDEQGTILSVNKDPGKIPTYIGYTLLTLGFLWILFAKNSRFQKLSNYLKN
                     QKNLLLILFCLFAFNIKSFADENTLKLIQNIKENSAKHSMLFGSLLVQDFDGRIKPID
                     TLAMNYIHKITKKNDFLGLNYNQIFLGMMMYPQHFRQIKMISVKTAKLKEILGVDKNE
                     KYLAYDDVFDGDFYKLSNYIEEANRKKPALRDQFDKDILALDEKINTAFYIYSGEIFR
                     IFPDPSQKTYTWYSPATPMPFDLKDIENIQSLLAKYFFDFEQALSTKDFSKADESLER
                     LKNFQNFYGSNLIPTPTQISLELFLNHYNIFDNLTPIYLLLGSMLFILLVYEILSLKK
                     APKMLKNAIFILIALSVLAHALALIFRWYVGDHAPWSNAYESMVYIAFACAFAGLVFY
                     KRSSLALCTASIMAGISLFVAHLGFMDPQITNLVPVLKSYWLNIHVSIITASYGFLGL
                     CFLLGVFSLILFMLRNPKKAQIDQSILNLHCINEMAMIIGLALLTIGNFLGGVWANES
                     WGRYWGWDSKETWALISIIVYTMILHLRFISKFNNPYAFASASVIGFYSILMTYFGVN
                     FYLSGLHSYAAGDPVPVPKFLYFFIAFTVILILGAFFKRRLKNPV"
     gene            complement(7686..9356)
                     /gene="ggt"
                     /locus_tag="KLC54_001137"
     CDS             complement(7686..9356)
                     /gene="ggt"
                     /locus_tag="KLC54_001137"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HBD9177509.1"
                     /translation="MRYLAIFAISITLSFGAANPPIQDRTGTGLVLSSHELANKIGKE
                     VLDKGGNAIDAAVAVGYALAVVHPAAGNIGGGGFAVIHLANGENTTLDFREMAPLKAS
                     RNMYLDSKGEVIKDASTIGYLAAGVPGTVKGMSAMLDRYGTMKLKDLMAPAIKLAEKG
                     YLINDRQEQTMLEAKDMFKEFPSSSKYFLKKDGSTYKSGDLFVQKDLAKTLKLIAKEG
                     PDAFYKGKIADLIAADMAKNKGIITKEDLAQYQAIWRKPVEGTYRGYDIISMSPPSSG
                     GAHIIEILNIMENANIENLGFASSKTLHIMAEAMRQAYADRSEYMGDPDFVKIPLDKL
                     TSKEYAKEIYAKIPKDKALPSSKVKPGLGQIHEGHNTTHYSVLDSKGNAVSITYTINA
                     SYGSGAAVEGAGFLLNDEMDDFSIKPGVPNLYGLVGGEANAIEPKKRPLSSMSPTIIL
                     KDGKVFMVVGSPGGSRIITTVLQVISNVIDHKMDISTAVESPRFHMQWLPDEIRTEPF
                     GIIKDVQNNLEKMGYKITKEPYMGDVNAIMVDPKTGKIVGSMDTRKEF"
BASE COUNT         3107 a         1455 c         1580 g         3265 t
ORIGIN      
        1 tttagttctt ttaaaaaagt tgtttgcgtg atcggctact tggtttattg atagaatttt
       61 aaataaaaaa tagaaattaa tatataaatt cacgatgaaa ttgttaattt tattaattat
      121 taagtttaat taacataaac tttatatata aaagttaata taatttaaat aagataattt
      181 atatcttaaa ctatttattt cataattata ttatcttaaa aattttattt ataaggtgta
      241 tcttatgaaa aagcttattt ctaagggaaa ggttttaacc ctattacttg gggtgggatt
      301 tgctttaaat gtgagtagtg cagaaaattc aaatgttctt attcaaggag aagctgcaca
      361 agatggcgat actaaaccaa gaacgcttga gggttatgtg caccaagaag atgcgttttt
      421 taaatatctt aaagaacatc atcctatgtt taaatatgaa aaagaaggtc gtatagtagg
      481 taaatatgct attagtgata gggaagaaga atatgtagaa ttttctaatg gtcctacttt
      541 tgcacagcaa aacaatctag ctcatacttc agtgacttat cgtttaggaa tggaatcttt
      601 tttagatttt ccaaataaat ttgtaggtcc aaaaaaatgt ggtgaatgtc atcctgctca
      661 atataaagct tgggaaagat cacgtcatgc aaaaaccgtt cgttttcctg atgagtttga
      721 agaagtagga aatgatttaa aaaaacctat gtataactca caatctacta ttttaccaga
      781 tggaatttat cctgatgatg tctatgctgt aattggaaca cctagaacaa aatatggttt
      841 tattgataga tggttggttc gtggaactta tcatgttgaa gatggaaatc ttagtaatat
      901 gacaggaaaa attgtagctg gcggcaatca attctcaagg ctttggagtg agtttttaac
      961 acctgaaatg accaaaaaaa tagcagaatt ttctccaggt ttccctacta ctatggaaca
     1021 atttggaggt aatggctctc aagtttgggg aacaaattct tatgcagcac aatatcgtaa
     1081 aaatatgctt tttcagcctg caagttctta ttgtgaaacc tgtcatagtt ttaaatttga
     1141 ttttaaaagc aaagaagaat tttataaagc tttaggaaat actcaagagc ttagaaaaca
     1201 tacaatttca aaaggtattt cttgtgaaga atgtcatggt gcaggtgctc atctttatgg
     1261 tgctagaggt gcaggtatgc catcaaactg cgaaagatgt catcaaagat tttcttataa
     1321 tgaagaagat gctaagaaaa atcctagaaa accatttaat gccttcttca aatctagctg
     1381 tccagcttgt ggaactgaag gtgcgcaaat gtatagttca gctcactatg ataagggtat
     1441 gagatgttct acttgccacg atcctcatga ggttactttc aatgattgga aagatggata
     1501 tactaaagta gggcttaaaa aaacttgtac agattgtcat gacacacaag ctagcttctt
     1561 taaacaagga ggaattcatt caaaagataa ttgtacagct tgtcacatgc caaatatgat
     1621 gagttgtgaa aactttggag cagttcaaaa tcccgataaa ggtggatttg ataatgttag
     1681 agcttctcac atttggaaaa taaaagttga taaaactgct aaaactctta atccgccaga
     1741 aggtaaagaa agatctccaa aaactccagg atggaccatc gctagagatg atgatggaag
     1801 atttttcctt gatttaatgt gggcttgtgg acgtacaagt tttagtgatc caaatttaat
     1861 ggggccaggt gcaagtggat gtcacagtgc ggttcaatca aatttaccta aaaaacttca
     1921 ttttacagat caagagacta tctacgacat tgttgtaggt tggcaaaaac ctgtaaaaga
     1981 tggatatgaa aatattctta aaggcgtgaa agaaattgat aaagctatgg ctgaaaatcc
     2041 taaactttct gtagagaaaa aatctcgtgt tattactttg gcaaatcaag caagggctat
     2101 tgcagaaaaa ttgcaaaaag atggttcttg gggtgtgcat ggtcctgttt actccaaaaa
     2161 aatagtagat gaggctttgg tttatataca agaagctaaa aatattttaa aataaaattt
     2221 tcgcccattt tttgggcgag tttaaggagt aaattttgaa acaaagttta ataaaattta
     2281 tattgcttgc tgttttttgt ttttcaaccc cttttttact tgccgacgga aaaattcaaa
     2341 taggtatagt tgaaggtgta actcctatca gcatgaaaga tgctgaaaaa cttttagggc
     2401 aaaaaaatgt atattttgtg gatgttaatt ccaaggaaga aagagaagtt gcaggtaata
     2461 tacctaatgc tgttttagtt gatgcgcaaa attggcaaaa tttattacct gatgatttta
     2521 atgcaacttt aattttttat gggtcgaatc gttttacttt tgatgcttct aatattgcaa
     2581 atttaagcca aaaattaggc tatacccatg tttatgttat gttagatggt atagaatctt
     2641 gggtgctttc tggaagaaaa gttcaaaaag aacaaataga aaaatggcaa aacgctaaaa
     2701 atttagatga ttttaaagat agcattcatt caagaatgta ttttggagat gttccaagtt
     2761 gtagggattg ccacggaaaa ggcgaagata aaaaatctat tcgctacaat aatgctgcaa
     2821 atttagatct tatcaataaa aactgtgcaa gttgtcataa agatgtagat aaagaattta
     2881 aacacagcat tcatcaaaat atcagccaaa tacaacttga taaagatgga aaaaagaaaa
     2941 aaattccaac ttgtaccact tgtcatgata tccacaacaa cgatccgtta atgaatgcaa
     3001 tgaccttaaa acaaagaagt gattttaaat gcggtgaatg tcatcaagat aaacaagatc
     3061 gctatcatga tacttttcat ggtaaggcta tggtattaaa tagtcccggt agtgctccaa
     3121 aaatcgcagc ctgttatgat tgtcacggca aacacaatat tttaaaagtt gaagatttaa
     3181 actcaaccct atcgtcttta aatcgtgttc aaacttgtgc acaatgtcat ccaaattcta
     3241 atgaaaattt tgccaatttt attgcacatg ctgatcatag tgatggagaa aactatcctt
     3301 tacttcacgg tgcttatatc tttatgaccg ctttagtgat aggagttttt gtattctttg
     3361 gtttgcatac tttactttgg agtataagac tgattttagc aagattttca catcctgcag
     3421 aatggaaaaa agcaaaagaa aatgcacaca atgacaaggt tttaatcaaa cgtttttcaa
     3481 ccttccataa aattcagcat ttctttatgg cggcaagttt cttaggactt gctttctcgg
     3541 gtttgccaca aaaattttat accgctcctt gggcacaaac catgatagat cttataggcg
     3601 gaccaatcgg tgcaaccata gtgcatcata ttagtgctat tgttatgttt atagtctttt
     3661 tctctcatat tggagaaatc atacttgtaa actggaaaag aagagattta gtgcgtgatc
     3721 cacaaacagg aaaacttgat aaaatgaaaa ttttaaaagc cctttttgga cctgattctt
     3781 taatgccaaa ttggcaagac tttaaagata tgaaagcaca ttttaaatgg ttctttggca
     3841 tgggcgaaag accacaattt gaccgctgga cttattggga aaaatttgat tatctagcag
     3901 tattttgggg tatgtttgtt ataggacttt caggattggt tttatggttc cctactttct
     3961 ttagtacctt tttaccaggt tggatgatca atctttgttc tttagtgcat tctgatgaag
     4021 ctttacttgc aacaggattt atctttgcaa tccacttctt caatactcat tttagagcag
     4081 atcgcttccc tatggatatg gtaattttct caggaaccca aagtgaagcc gagattaaac
     4141 aagaaagaaa tgcgtattat caacgcctaa aagaaagcgg aaagcttgaa agtttatatg
     4201 agaaaaactc taaatttaat tcttataaag gcattgctaa attagcaggt tatttgatgc
     4261 tgattacagg aatgatcttt ttattcttga tgatttatgc ttttatagtg gatttattaa
     4321 aataataatt gcctagattt tctaggcaat tttaaatgaa aggatttgat gttaaaaaaa
     4381 ctgattttag gatttataat attattattt tgtgcttgta atgatgaaaa aatagatgaa
     4441 aatattcttt ccaaaggaac aaaaactaca gaacaataca aacaagatac aaacaatctt
     4501 gatctcaact cttacaaaga aatcgcagaa ttttttaaag acaatcaaaa tattgttttt
     4561 tctgacaaac ctgtgctaat tatttttagt gcaaataatt gtgtttattg cgataaatta
     4621 aaacacgaaa ttcaaaacaa caaagaagtt caaaatatct taaaaaacac atataattct
     4681 tattatatca atacaagtta tcataaaatt cataattacg acaataaaaa aacaagcaca
     4741 gaagaacttt caagagaatt taatatagac gctacgccta ccttagtatt tttcactcct
     4801 aaacataaaa ctttactaat ttatcctggt tttatgagtg ctaaacgcct tgctttgact
     4861 atggaaattt taaaagatga aaaaaatcaa aagcttaatg aagatgagct ttttaaaaca
     4921 ctttttctag catacaagga gaaaaatgtt taagaaaatc tttttttcct tttggatgag
     4981 tcttatttta ctttttatct atgctctttc ttgtgcagta gcgacttttg tcgaaaatga
     5041 ttttggcaca aatgctgcta aagccttagt ttataatgct ttatggtttg atatcttaca
     5101 ccttttgctt ttaatcaatc ttataggtat tatttttata cacaaacttt tacaaagaaa
     5161 aaaatatgct tccttgctct tgcatagtgc ttttatagta attttacttg gcgctgcaat
     5221 cacgcgttat tttggcatag aaggaggtat gcacattaga gaaggacaaa gttctgatat
     5281 cattgtgaca agagatgaat ttatagcctt aatgctttat aatgatgaag gtaaggttat
     5341 agaatatcaa tcctttggag tagcttttaa tcctttactc cataatagtt ttgaaaaaaa
     5401 agtttccatg cagcaaaata aaactataaa tttaaaacta cttgattatg aaaaagctcc
     5461 taatgcaatg agcaatccta tcatcaaaat gcaaatttct tttaataatg aaagcaaaga
     5521 aattttactc actccaaatt acaacaatga aaatgtttta ccttttagat taggaggtga
     5581 aatttttgca ctcaactggg gtcctgaaga gattaaactg cctttttctt tggctttaaa
     5641 agattttatc cttgatcgct acgcaggttc tatgagtcct tcttcttatg cttcagatat
     5701 cgaagtgatc gatcaagata aaagttttga gtataaaatt tttatgaata atgttttaga
     5761 ttatggcgga tatagatttt ttcaaagttc ttatgatcaa gacgaacaag gcaccatact
     5821 ttcagtcaat aaagatcctg gaaaaattcc aacctatata ggctatactt tgctgacttt
     5881 aggtttttta tggattttat ttgctaaaaa ctcaagattt caaaaattat caaactatct
     5941 taaaaatcaa aaaaatcttt tattaattct tttttgtctt tttgctttta acataaaaag
     6001 ttttgccgat gaaaacacct taaagcttat acaaaatatc aaagaaaatt ctgcaaaaca
     6061 ttctatgctt tttggaagct tacttgtgca agactttgat ggcaggataa aacctatcga
     6121 tactttagcg atgaattaca tccataaaat taccaaaaaa aatgattttt taggtttaaa
     6181 ctataatcaa atttttcttg gtatgatgat gtatccacaa cattttagac aaataaaaat
     6241 gattagcgta aaaactgcaa agctaaaaga aattttaggc gtggataaaa atgaaaaata
     6301 tcttgcttac gatgatgttt ttgatggaga tttttacaaa ctttcaaact atatagaaga
     6361 agcaaatcgc aaaaaacctg ctctaagaga tcagtttgat aaagatattt tagctcttga
     6421 tgaaaaaatc aacaccgctt tttatatcta tagcggagaa atttttagaa tatttcctga
     6481 tccaagccaa aaaacctata cttggtattc tcctgctaca cctatgcctt ttgatttaaa
     6541 ggatatagaa aatatacaaa gcttattggc aaaatatttt tttgattttg aacaagctct
     6601 tagtaccaaa gatttttcta aagccgatga aagtttagaa agacttaaaa atttccaaaa
     6661 tttttatgga tcaaatctta tccctacacc tactcaaatt tctttagagc tttttttaaa
     6721 tcattataat atttttgaca atctcacccc tatttatctt ttactaggta gtatgctttt
     6781 tatcttatta gtctatgaaa ttttaagcct taaaaaagct ccaaaaatgc ttaaaaatgc
     6841 catttttatt ctcattgctt taagtgtttt ggctcatgct ttagctttaa tctttcgttg
     6901 gtatgtagga gatcacgctc cttggagtaa tgcttatgaa agtatggttt atatagcttt
     6961 tgcttgtgct tttgcgggac ttgtttttta taaaagatct tctttagcac tttgtactgc
     7021 aagtattatg gctggaattt ctctttttgt agcacatctt ggttttatgg atccacaaat
     7081 tacaaatctt gtgcccgttt taaaatccta ttggcttaat atccatgttt ctatcatcac
     7141 tgcaagctat ggatttttag gactttgctt tttgcttgga gtatttagct tgattttatt
     7201 tatgttaaga aatccaaaaa aagctcaaat agatcaaagt attttaaact tacattgtat
     7261 caacgaaatg gcgatgataa taggacttgc tttactcact ataggaaatt tcttaggtgg
     7321 agtttgggca aacgaaagct ggggaagata ctggggttgg gattctaaag aaacttgggc
     7381 tttaatttct attattgttt atactatgat tttacatctt agatttatct caaaatttaa
     7441 caatccttac gcctttgcaa gtgcgagtgt tataggattt tattctattt tgatgactta
     7501 ttttggggta aatttctatc tttcaggatt gcattcttat gcagcaggag atcctgtgcc
     7561 tgtgcctaaa tttttatatt ttttcattgc ttttacagtg attttaattt taggagcatt
     7621 ttttaaaaga agacttaaaa atcctgtata aatttaccct tgaaatttca agggtaaata
     7681 agaagttaga attcttttct tgtatccata gagcctacga tttttccagt ttttggatcg
     7741 accatgatag catttacatc acccatataa ggttcttttg tgattttata gcccattttt
     7801 tcaagattgt tttgtacatc tttgatgatt ccaaaaggct ctgttctgat ttcatcaggt
     7861 agccattgca tatgaaatct tggagattct accgctgttg atatatccat tttatgatcg
     7921 atcacatttg aaatcacttg taaaactgtc gtgatgattc tagaaccacc tgggctacct
     7981 actaccataa atacttttcc atcttttagt atgatagttg gactcataga gcttaaaggt
     8041 ctttttttag gttctatagc attagcttct ccgcctacaa gtccgtataa atttggcacg
     8101 cctggtttga ttgaaaaatc atccatttca tcattgagta aaaaccctgc cccttcaacc
     8161 gcagcgcccg aaccataact cgcattgata gtataggtaa tgcttacagc attgcctttg
     8221 ctatctagca cagaataatg agtggtatta tgtccttcgt gaatttgtcc taaaccaggt
     8281 tttacttttg agcttggtaa agccttatct tttggaattt ttgcataaat ttctttggcg
     8341 tattctttgc ttgtaagttt atcaagtggg atttttacaa aatcaggatc gcccatgtat
     8401 tctgatctat ccgcataagc ttgacgcata gcttcagcca ttatgtgtaa agttttagag
     8461 cttgcaaagc ctaaattttc tatattggca ttttccatga tatttaaaat ttcgatgata
     8521 tgagcacccc cactgctagg tggcgacatg gaaatgatat cataacccct ataagtgcct
     8581 tctacaggtt ttctccaaat agcttggtat tgtgctagat cttctttagt gataatgcct
     8641 ttgtttttag ccatatccgc tgctattaaa tcagcgattt ttcccttata aaaagcatca
     8701 ggaccttcct ttgcgataag ttttaaagtt tttgctagat ctttttggac aaacaaatcc
     8761 ccgcttttat aagtgctgcc atctttttta aggaaatatt tgcttgaact aggaaattct
     8821 ttaaacatat ctttagcttc tagcatggtt tgttcttgtc tatcgttgat gagataacct
     8881 ttttcagcta gttttatagc aggagccatc aagtctttta gtttcatagt gccgtagcga
     8941 tcaagcatag cactcatacc tttaaccgtt cctggtactc cagcagctag ataacctata
     9001 gttgaagcat cttttataac ttctcctttg ctatcaagat acatatttct gcttgctttt
     9061 aaaggtgcca tttctctaaa atcaagcgtg gtattttctc cattggctag atgaatgact
     9121 gcaaagccac caccacctat gtttcctgct gcaggatgca ctacagccaa agcataacct
     9181 actgctacag ctgcatctat ggcatttccg cctttatcaa gaacttcttt gcctatttta
     9241 ttggctagtt catgacttga taaaacaagt cctgtgcctg ttctatcttg tataggtgga
     9301 ttagctgcac caaaacttag cgtgattgaa atcgcaaata tagctaaata acgcatttta
     9361 ctccttttta atgatatata gaattattgt aacaaaacta ggggtat
//
LOCUS       DAEDTT010000062         9144 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.062, whole genome shotgun sequence.
ACCESSION   DAEDTT010000062 DAEDTT010000000
VERSION     DAEDTT010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9144)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9144)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9144
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.062"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..576)
                     /locus_tag="KLC54_001138"
     CDS             complement(<1..576)
                     /locus_tag="KLC54_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HBD9177510.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNINFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQILKQKPYELSGGEATRVGLIR
                     ALVLNPKLLILDEITSALDIKTSKEILTFLYD"
     gene            complement(569..1279)
                     /locus_tag="KLC54_001139"
     CDS             complement(569..1279)
                     /locus_tag="KLC54_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9177511.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILEELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLNEFLRYYNA"
     gene            complement(1276..2070)
                     /locus_tag="KLC54_001140"
     CDS             complement(1276..2070)
                     /locus_tag="KLC54_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD9177512.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPFLAPFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSKAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(2057..3001)
                     /locus_tag="KLC54_001141"
     CDS             complement(2057..3001)
                     /locus_tag="KLC54_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HBD9177513.1"
                     /translation="MLKRLVFSIVVAFFSTFLCFVLLYFSKGSIAYANGVNSQSKEFV
                     QRIEQNLGLDKPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSAL
                     MLLFLLSVFLALLGYSYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLAAFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(3001..4536)
                     /locus_tag="KLC54_001142"
     CDS             complement(3001..4536)
                     /locus_tag="KLC54_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HBD9177514.1"
                     /translation="MLRFLIFAMLLFVNLEAKIPKDTLIIAVENEIARINPAYSEDHD
                     AVINLVFSGLTRFDENMSLKPDLAKSWDVSKDGLVYDIFLRDDVLWHDGVKFSADDVK
                     FSIEAFKNPKNNSSVYVNFEDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPKHLL
                     ENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFKANEHFYLDKVKTPRLIIKHIFDPS
                     IASAQLKNGKIDAALIDVSLLNIFKNDENFGILREKSADYRALMFNFDNEFLKDLKVR
                     QALNYAVDKESIVKNLLHDYAFVANHPLERSWANSKNFKIYKYDPKKAEDLLVSAGFK
                     KNKDGNFEKEGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTLN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKARTLGHHGVGFTWNVYE
                     WSK"
     gene            4832..7195
                     /locus_tag="KLC54_001143"
     CDS             4832..7195
                     /locus_tag="KLC54_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HBD9177515.1"
                     /translation="MEQNRRDFLKWSSLFGGLTLSPISLSANLLKTPPLISKWAGCNV
                     NCGTKCPVKVHTQDGIIKYVSTDNEGDDSFDNRQARACIRGRSSRYKVYNANRLKKPL
                     KRVGKRGEGKFMPISWEQAFDEISAKMQEIKEKYGNEAFYINYATGTTGTIINRCTQG
                     PWARLLSLYGGYLNYHNSYSTAQISNAMNFFYGGSPASDIYTLRSAKLAIFFGANHVE
                     TRMGGGGVGYAYQKALEESGCKIIHIDPRYNDSMIGHCDEWIPIAPGTDAALIAALTY
                     VMIKEDLLDRTFLDKYTIGFSENTLPQDAAKNSSYESYVLGLNDGVEKTPNWASKITK
                     IPARRIVQLAREIATIKPCFIEQGWGVQRHSNGEQNARAIATLACITGNIGIEGTNTG
                     CRTGSSKTYDIMGMPFKNPIKDSIPCFLFTDAIYRGKEMTDISDGVRGTTQLKQNIKF
                     IFNTAGNCLTNQHSTIKEVHDILSDENLCECIVDVNVTRTPSNNYADYILPDATMLEQ
                     EDFIRPSAGYYSNKPYIIYCQKAIEPVGEAKPIYEMCLELAKRLSIEKEFSEGRTQKD
                     WLKYLYEESMKKNPLLPSFEEMCEKGLVKFEPVKPVVALQSFIKDPINNPLKTPSGKI
                     EIYSTKLAQMQKTWKLKEGQQIVPIPVFESQREGILDPLKQKYPLQFFGYHYKGRTHS
                     SFWEIPQIREANPQEIWINTIDAEQRSIKTGDVVQVRNDLGIIQGIAKVTPKIIPGCA
                     VTPQGAWAKYENGIDVGTCVNSLASIVPTAISKGNGQHSILVEIAKV"
     gene            7206..7862
                     /gene="dmsB"
                     /locus_tag="KLC54_001144"
     CDS             7206..7862
                     /gene="dmsB"
                     /locus_tag="KLC54_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HBD9177516.1"
                     /translation="MKLEENSQFGFMLDQSKCVGCRTCSLSCKDYKNMPVGVNFRRVF
                     ETEGGNWTAKEDGSFEQSVFAYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDS
                     MCIGCKACAMACPYGAPQFNHESGHMSKCDGCYERLKEGKNPICVDSCPFRALKAGDI
                     TKLREEHGNLASITPLPDASITHPNLCIVPEKHSLPSGNKSAIFHLPQNYQGVKNDII
                     "
     gene            7849..8715
                     /locus_tag="KLC54_001145"
     CDS             7849..8715
                     /locus_tag="KLC54_001145"
                     /inference="COORDINATES: protein motif:HMM:NF016838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit"
                     /protein_id="HBD9177517.1"
                     /translation="MTSFNHILSEMPLVLFTILAQAVIGLSLVYAPAFINGYKNYANL
                     KSFGLALGIAMMVAFIPSFFHLNDITHIFNVLNRMGVFYANNEWHIGWMNNEILFVSL
                     VCALGFLLYLKTSNWVFYLTLICGILGLFFMSGAYGSMQESVPTWDFKITLLYFFASA
                     IFLGAIVYYCFFENSEHERKMSFFTGLIGIGLLSTAIVLQTLHVGQTWIMGLVNPFEL
                     LGGTYDWFISLSFAFLGLGIVTWYLHNYLHEKFKSKFFAYFALLCAFLGVFTTRMLFY
                     GLISTQIMLGHS"
     gene            8715..>9144
                     /locus_tag="KLC54_001146"
     CDS             8715..>9144
                     /locus_tag="KLC54_001146"
                     /inference="COORDINATES: protein motif:HMM:NF014651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HBD9177518.1"
                     /translation="MQKLAIDIFINFLQNPPNHFLLEKLKKEEFWQNWFLKNNSKLQC
                     TALKLLSSSNEDDKLIASDFTSLFLSDVDYVKAPPFASFYLDENKEIYSDNSDKVKQI
                     FAQNNFFSFFNEEPADSLINELLFISFLIKKQDDITLQKFL"
BASE COUNT         3425 a         1468 c         1321 g         2930 t
ORIGIN      
        1 gtcatataaa aaagttaaaa tttctttaga agttttaata tcaagtgctg aagtaatttc
       61 atctaaaatc aacaatttag gatttaaaac caaagcacgg ataagaccta cacgcgtggc
      121 ttctcctcca cttaactcat agggtttttg ttttaaaatt tgctttttta gactaaaaaa
      181 atcaaaaaat tctaaaatca aatcatcatt cttttgtaaa ttaaaatttt ccaaaccatc
      241 ttgtataaga tttttaattt ttttataagg gtttaaagcc attttttgat cttgaaagca
      301 atactgaatt tgctttctta aaagtctttg tttgttttta tcaagcttgt gtaagttaag
      361 attttcatac catacctcac cctcacttgg atcttctaaa aaacaaagaa ttctagctaa
      421 tgtgctttta cccgcaccac ttttacccaa aattattaaa ttgtcatttt catttaaaga
      481 aaaattgata ttatcaaaaa taatatgtct ttcttttttt aaataccagt gctttttaag
      541 ctcataaaac ttacttaaat tacaaacttt aagcattata ataccttaaa aactcattta
      601 agctatataa atttgaacta tttttttcta gcataagaat ttcatctgct aaagaattta
      661 ccaaatttaa atcatgagtg atgcaaacta aggctgtggt attttttaat tcttctaaaa
      721 tcgatatgat cttagaagcg ttttctttat ccaaagaagc tgtgatttca tcacaaatta
      781 aaatttgggg ttgatttaat aatgccaaag ctaggctcac ccttcttgcc atacccaaac
      841 ttaattcatt agcataagaa tgccacaaac gatcaagatt ttcaaatcct aatttttgaa
      901 aataagaaaa agcgtaatct tttctttctt tttgttttaa ttttgtatga gtttttaaaa
      961 caagatgaca taaatttcca atatccaaat aaggataaag actaagctct gcatcttgca
     1021 aaacaagtgc caccttagaa cgaaaatttc taagttcttc tttgttaaaa ttaaaaatgc
     1081 aagaattatg aaaacttaat tcatcaaaac ttattgtgaa attagaatct aaaagtctta
     1141 ccaaagcttt tcctaacaaa cttttaccca ctccactttg tcctagtatc attaaagttt
     1201 tacctgtttt tatatctaaa ttaatatcct taagcaataa attattcttc aaactgatat
     1261 ttaaatttct taccttcaag atcttatacc ccaaattttt tgtaaaaaat tacccaacca
     1321 taaaagaggt aaaaacaaca aaagcaagct taaaagtgga aaaagtatca tccaccaagc
     1381 gcctataaaa actgcttttg aagactcact caaaagagta cctaaagttg gaatttcaaa
     1441 tcctaaaccc agtccaaaaa aactcaaagt agcttctgtg gctatagcat gaacgatatt
     1501 aaatataaaa agtgtaaaaa tcagtgtttt taaagcaggt attaaatctt taaaaaaagc
     1561 tctaaattta gttcttccaa gcactatatt tgctttgtaa aaatctaaat tttcaagtct
     1621 ttttaattca ctttctataa ttcttgctat gaaacaccaa tgaattaaag cgattaaaaa
     1681 aatcatcaaa aacacatcag aagttatcat actttgaaaa aacatcataa gtaaaaaagc
     1741 aggcaaggct aaaaaaaact ctaaaatacg catccaaaaa acataaaaaa aacatcgcgc
     1801 taaaaacaaa tagcacaaag caaagataat agacaataaa gatccaccaa cacctataat
     1861 caaagaattt ctcaaagcaa aaagcaaacg agaaaacaaa tctctgccta aaaaatcagt
     1921 ccctaaaata taagtaaaat taggagcttg atgcaaattt tctaaatgag tacttaaaat
     1981 atcaaaagga gccaaaaaag gtgcaaacaa ggcgcataaa aacaaaaaaa ttaaaggcgc
     2041 aagaatgata agaaatttaa acaaaatcaa gccttcttaa tctaggattt aaaatcctag
     2101 ctacaatatc acttaaaaat gtaaaaaatg ccgcaagcaa aacactaaaa aatataagcg
     2161 caagcacaac aggataatct ttaaaaataa tacttttaaa aagtaaagac ccaagcccct
     2221 cgtaagcaaa gacactttct accacataag ttcccatcat aaaacttaaa gcacttcccc
     2281 caaaataagc cacaatagga cttaaagaat atttcaaaac taaaaaataa atatctttct
     2341 cccttaaagc cctagcgtat aaattttgaa taaaaatttg agaaaaactt tcattgataa
     2401 aatttctagc aatccttaaa aataacgcca aatgtgataa aacgagcacc aaaacaggca
     2461 aaatcaaatg ctctaaacga tttaaaaaat catcttcaaa gcctatatca ctacttccca
     2521 taacaggcaa aattttccaa aaaattccaa aaatcaaaac aaacaataaa gccaaaacaa
     2581 aaggaggtaa agcaaaaaaa ttaaaagcta aaaaagtgat gattttatct ataaaacttt
     2641 ctttataaga atatcccaaa agtgccaaaa aaacactgag taaaaataaa agcattaagg
     2701 cactaaaacc caaaataaaa gtattaaaaa ttctttcttt tataagcttt aaaacacttt
     2761 ctccacttaa aaaagaaact cctaaatctc cttttaaagc cttaaaaagc caaattttat
     2821 actgctctag caaaggctta tcaagcccta aattttgttc tattctttga acaaattctt
     2881 tactttgtga attaactcca ttagcataag ctatactgcc tttactaaaa taaagtaaaa
     2941 caaaacataa aaaagtgcta aaaaatgcta cgacaatact aaaaactaag cgttttagca
     3001 ctatttactc cactcataaa cattccaagt aaaacccact ccatgatgac ctaaagtcct
     3061 tgctttgata ccttttaaat ctttattata aaccaaagca aaatcaagat aggctaaaaa
     3121 aataaaagga ggattttcat acaaagcatc tataaaatct ttataatatt tttttctctc
     3181 ttctaaattt aaagtatttc ttgctttttg caaggctata tccacttttt tatcatgata
     3241 atgtccaaaa ttccaaccct catcatttaa agcactatct tgcgaacttt caaataccct
     3301 aaaagtgtga aaatcaggat ctaaaggact tccccagcct attaaaaaac tatctacttt
     3361 agaataatca aaacttccag caggtttagc caccaccttg cttacaactc ctatttttct
     3421 aaattcgctt tgcaaaattc cagctaaact tacccttaaa ggatcattac tcatcgccca
     3481 aatttcaaat tctaaaattt tcccctcttt ttcaaaattt ccatctttat ttttcttaaa
     3541 acctgcactt acaagcaagt cctcggcttt tttaggatca tatttgtaaa ttttaaaatt
     3601 cttagaattt gcccaagaac gctctaaagg gtgattggct acaaaagcat aatcatgtaa
     3661 aagatttttt actatacttt ctttatcaac tgcgtaattt aaagcttgtc ttactttcaa
     3721 atcttttaaa aattcattat caaaattaaa cattaaagcc cgataatcag ccgatttttc
     3781 acgtaaaatt ccaaaatttt catcattttt aaaaatattt agcaaagaaa catcgattaa
     3841 agctgcgtct atcttgccat ttttaagctg ggcactagct atagaaggat caaaaatgtg
     3901 ttttataata agtcttggag tttttacctt atcaagataa aaatgttcat tggctttaaa
     3961 ttcaacatat tcaccttttt tccattttac aaatttataa ggacctgtac ctataggatt
     4021 ttgattaaaa gagcttgtgt ttaaattctc attttcaagc aaatgtttag gaagcattcc
     4081 tatgcttaaa gcatctaaaa atgcaggata aggtttaaaa agtgtgattt ttacatgaga
     4141 aggatttaaa atttccacac ttttaatgtc ttcaaaattg acataaacag aagaattgtt
     4201 tttaggattt ttaaaggctt ctatgctaaa tttcacatca tcagcactaa atttgactcc
     4261 atcatgccat aaaacatcat ctcttaaaaa aatatcataa acaagcccgt ctttactaac
     4321 atcccaagac ttagccaaat caggttttaa actcatattt tcatcaaaac gcgtaagccc
     4381 tgaaaataca agattaatca ctgcatcgtg atcctcacta taagcaggat ttatccttgc
     4441 gatttcattt tcaactgcta taataagtgt atcttttggg atttttgctt ctaaattcac
     4501 aaacaacaac attgcaaaaa ttaaaaatct caacataaaa aaccttttta ttttaataac
     4561 gcacaaaatt ataaaacaaa aaaactcaac tcgcaagcct atacggggga taaagttata
     4621 ttttagttat aaatttatat ttaaatacta ttttaataaa tttttatcat tatattattc
     4681 aaatttttat tttttgaagt taaattcata aacgaaaaat ccattataaa gcctatattt
     4741 aggagtttta aagtcttaat tttaattgaa taaaattatt atttgtatta taatcgcaat
     4801 tacttttgtc acataaatgt aaggagataa catggaacaa aatcgtagag attttttaaa
     4861 atggagttct ttgtttggcg gcttaacctt aagtcctata agtctaagtg caaatttatt
     4921 aaaaactcca ccattgatca gcaaatgggc tggatgtaat gtaaattgcg gaacaaaatg
     4981 tcctgtaaaa gtgcatactc aagatggaat tattaaatat gtcagtactg ataatgaagg
     5041 tgatgatagc tttgataatc gtcaagcaag agcctgtatt agaggtagaa gctcaagata
     5101 taaagtttac aatgcaaatc gcttaaaaaa accattaaaa agagtgggga aaagaggtga
     5161 aggtaaattt atgcctattt cttgggaaca agcttttgat gaaatttctg ccaaaatgca
     5221 agaaattaaa gaaaaatacg gcaatgaagc cttttatata aattatgcaa caggaacaac
     5281 aggaacaata atcaatcgct gtacacaagg tccatgggct agacttttaa gtctttatgg
     5341 tggttattta aattatcata attcttattc tacggctcaa atttcaaatg ctatgaattt
     5401 tttctatggt ggatctcctg ctagcgatat atacacttta cgctctgcaa aattagctat
     5461 attttttgga gcaaatcatg ttgaaactag aatgggaggt ggtggagtag gctatgctta
     5521 tcaaaaagcc ttagaagaaa gcggatgtaa aataattcac attgacccaa gatacaatga
     5581 ttctatgata gggcattgcg atgagtggat acctatagca ccaggaaccg atgcagcttt
     5641 gattgctgcg ctaacttatg tgatgataaa agaagattta cttgatagaa cttttcttga
     5701 taaatacacc ataggcttta gcgaaaatac tctgccacaa gatgcagcca aaaactcaag
     5761 ctatgaaagc tatgttttag gactaaacga tggagtagaa aaaactccta attgggctag
     5821 caagattaca aaaattccag cacgccgcat agttcaactt gcaagagaaa ttgccaccat
     5881 aaagccttgt tttatagaac aaggttgggg agtgcaaaga cattcaaatg gagaacaaaa
     5941 tgcaagggcg atagcaactc tagcttgtat tacaggaaat attggcatag aaggcacaaa
     6001 tacaggatgt cgaacagggt caagtaaaac atatgatata atgggtatgc cttttaaaaa
     6061 tccaataaaa gattctattc cttgtttttt atttacagac gctatttatc gcggaaaaga
     6121 aatgacagat attagtgatg gggtgcgtgg cacaacacaa ttaaaacaaa atatcaaatt
     6181 tattttcaat acagcaggaa attgtcttac aaatcagcac agcaccatta aagaagtgca
     6241 tgatatttta agcgatgaga atttgtgtga gtgtatagta gatgttaatg taactagaac
     6301 tccgtcaaat aactacgcag attatatctt acctgatgca actatgctag agcaagaaga
     6361 ttttataaga cctagcgcag gatattatag caataagcct tatattattt attgtcaaaa
     6421 agctatcgag ccagttggtg aagcaaaacc tatttatgaa atgtgtcttg aacttgctaa
     6481 aagacttagc atagaaaaag aatttagcga aggaagaaca caaaaagatt ggctaaaata
     6541 cctttatgaa gaaagtatga aaaaaaatcc acttttgcct agttttgaag aaatgtgcga
     6601 aaaaggactt gtaaaatttg agcctgtaaa acctgtagtg gcattacaaa gttttataaa
     6661 agatcctatc aataatcctt taaaaactcc tagcggaaag atagaaattt atagcacaaa
     6721 actcgcacaa atgcaaaaaa cttggaaatt aaaagaagga caacaaatag tgcctattcc
     6781 tgtttttgaa agccaaagag aagggatttt ggatccatta aaacaaaagt atcctttgca
     6841 attttttggc tatcactaca aaggtagaac acattctagc ttttgggaaa ttccacaaat
     6901 tagagaagct aatccacaag aaatttggat aaataccata gatgcagagc aaagaagtat
     6961 caaaacgggc gatgtggtgc aagtaagaaa tgacttagga atcatacaag gcatagcaaa
     7021 agttactcca aaaatcatac caggttgtgc agtaacccca caaggtgcat gggcaaaata
     7081 tgaaaatggt atcgatgtgg gaacttgtgt gaattctttg gcaagtatag taccaactgc
     7141 tatttctaaa ggaaatggac aacattctat tttagttgaa attgcaaaag tttaaggaga
     7201 aaaagatgaa attagaagaa aattcacaat ttggttttat gctagatcaa agcaaatgcg
     7261 taggctgtag gacttgctca ctttcttgca aggattataa aaacatgcct gtgggagtta
     7321 attttcgccg tgtgtttgag actgaagggg gaaattggac agctaaagaa gatgggagtt
     7381 ttgagcaaag tgtttttgct tactacactt ctatttcttg caatcattgt tctaatccat
     7441 cttgtcttaa agcttgtcca actggtgcaa caatgaaaat aaaatgggga atagtagcaa
     7501 tcgatgatag tatgtgtata ggctgcaaag cttgtgctat ggcatgtcct tatggcgcac
     7561 ctcaatttaa ccatgaaagt ggtcatatga gcaaatgcga tgggtgttat gagagattaa
     7621 aagaaggtaa aaatccaatt tgcgtggact cttgtccttt tagagcatta aaagcaggcg
     7681 atataacaaa actgagagaa gaacatggaa atttagcctc tatcacacct ttacctgatg
     7741 cttctatcac gcatccaaat ttatgtatag tgcctgaaaa acatagtttg ccttcaggta
     7801 ataaaagtgc gatttttcat ctacctcaaa actaccaagg agttaaaaat gacatcattt
     7861 aatcacattt taagcgaaat gcctttggta ttatttacta ttttagcaca agctgtaatt
     7921 ggacttagtt tggtttatgc acctgcattt ataaatggtt acaaaaatta tgcaaattta
     7981 aagtcttttg gattagcctt aggaattgca atgatggttg cttttatccc ttcatttttt
     8041 catttaaatg atattacaca tatttttaat gtattaaata gaatgggtgt tttttatgca
     8101 aacaatgaat ggcacatagg ctggatgaat aatgaaattt tatttgtatc tcttgtgtgt
     8161 gctttgggct ttttgcttta tctaaaaact tcaaattggg tgttttatct tacgctaata
     8221 tgtggaattt taggactttt ctttatgagt ggagcttatg gctccatgca agaaagtgta
     8281 cctacttggg attttaagat cactttgctt tatttttttg ctagtgctat atttttaggt
     8341 gctattgttt attattgttt ttttgaaaat agcgaacatg aaagaaaaat gtcatttttt
     8401 acaggactta taggcatagg gcttttaagc actgctatag ttttacaaac cctacatgta
     8461 ggacaaactt ggattatggg gcttgtaaat ccttttgaac ttttaggtgg aacctatgat
     8521 tggtttatat cgctttcttt tgcattctta ggacttggga ttgttacttg gtatttgcat
     8581 aattatttac atgaaaaatt taaaagtaaa ttttttgctt attttgccct actttgtgca
     8641 tttttagggg tgtttaccac tagaatgcta ttttatggac ttataagtac tcaaatcatg
     8701 ttgggacatt cttgatgcaa aaattggcaa tagatatatt tatcaatttt ttgcaaaatc
     8761 cacctaatca ttttttgcta gaaaaactta aaaaagaaga attctggcaa aattggtttt
     8821 taaaaaataa tagcaaatta caatgcaccg ctttaaagct tttatcatct tcaaacgaag
     8881 atgataaatt aatagcaagt gattttacat ctttgttttt aagcgatgtt gattatgtaa
     8941 aagcaccgcc ttttgcttct ttttatcttg atgaaaataa agaaatttat tcagataatt
     9001 ctgataaagt taagcaaatt tttgcgcaaa ataacttttt ttcttttttt aatgaagaac
     9061 ctgcagatag cttgataaat gaattattat ttattagttt tttaatcaaa aaacaagatg
     9121 atataacttt gcaaaaattc ttaa
//
LOCUS       DAEDTT010000063         8831 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.063, whole genome shotgun sequence.
ACCESSION   DAEDTT010000063 DAEDTT010000000
VERSION     DAEDTT010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8831
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.063"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..667)
                     /locus_tag="KLC54_001147"
     CDS             complement(<1..667)
                     /locus_tag="KLC54_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HBD9177519.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYF"
     gene            complement(669..2174)
                     /locus_tag="KLC54_001148"
     CDS             complement(669..2174)
                     /locus_tag="KLC54_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HBD9177520.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASVAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFTSPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLSEVLMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFGKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNINKTHILEALSFRARN"
     gene            complement(2171..2698)
                     /locus_tag="KLC54_001149"
     CDS             complement(2171..2698)
                     /locus_tag="KLC54_001149"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HBD9177521.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            complement(2734..3318)
                     /gene="clpP"
                     /locus_tag="KLC54_001150"
     CDS             complement(2734..3318)
                     /gene="clpP"
                     /locus_tag="KLC54_001150"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HBD9177522.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            complement(3318..4652)
                     /locus_tag="KLC54_001151"
     CDS             complement(3318..4652)
                     /locus_tag="KLC54_001151"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HBD9177523.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RPGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKESKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLDGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFMPKTEKSEKASKKEKEDK"
     gene            4796..5368
                     /gene="folE"
                     /locus_tag="KLC54_001152"
     CDS             4796..5368
                     /gene="folE"
                     /locus_tag="KLC54_001152"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HBD9177524.1"
                     /translation="MQKKFEDCVKTILEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKEILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGVQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            5368..6753
                     /gene="fliI"
                     /locus_tag="KLC54_001153"
     CDS             5368..6753
                     /gene="fliI"
                     /locus_tag="KLC54_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HBD9177525.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEVSKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDTPNTPLPPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(6756..8093)
                     /locus_tag="KLC54_001154"
     CDS             complement(6756..8093)
                     /locus_tag="KLC54_001154"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HBD9177526.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYVVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNTEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(8095..8823)
                     /locus_tag="KLC54_001155"
     CDS             complement(8095..8823)
                     /locus_tag="KLC54_001155"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HBD9177527.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQAQISILYDKGGNLEELFE
                     KSDVIIDFSSPSGTHELLNYARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLKNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
BASE COUNT         2835 a         1573 c         1253 g         3170 t
ORIGIN      
        1 aaaaatatat atttttttct ctttcttctt caaatttttt cattttgggt aaaaatttct
       61 ggatcaaagc acgaaaattc ttaaaaccat aattttgcgg atgaaaatcc gagtatttgc
      121 ggttcatatt agtgcggatt tgtgcgtatt cagcgcgccc tttttcatcg ataagctgtt
      181 cggtgatatt gattaaagct cttaaataat ccttacttaa aatatcttct tttttactct
      241 catctttatc taaataaaaa aattcactaa aagcatttac ataggatttt atagactttt
      301 caagccccat tcctataact tgttttttat tttctcttaa tttttgaatg agtgaagtat
      361 aatcactatc gcttgaaaca ataacaaaaa tatctatgtt tttttcataa aatatggaca
      421 tgatttcagt gattaaatac atatcgcttg agtttttgtt ggctgcaaaa ttaaattgtt
      481 gcatagcgat taaagaatat tcagcaattt gctctctcca accttgtata tttttttgag
      541 tccaatcccc ataaatgcgt ttaatgataa cctctccgta atctgaagcg atatcaaaaa
      601 tacttttagc gtattttgca gggatatttt ctgcatctat aaagatagct atacttttat
      661 tttccatttt aattccttgc tctaaagctt aaagcttcta aaatatgggt tttgttaata
      721 ttaagacttt gttctaaatc cgctatactt cttgaaactt ttaaaatttt attaagcgat
      781 cgcaaagaaa gattataacg tgaaattgct aaatctagcg tatctttggc atctttttct
      841 agtacacaaa aacgacttaa atcttcatct tttaatttcc cattaaattc tttttgccct
      901 cgttttttac caaaaataaa agcttgtaaa attttttcac tcatttcttt agaacttata
      961 ctcgttttat catccttgct gatctcatcc atagctacat aaagatcaat cctatccata
     1021 ataggagctg aaatgtgatt tttgtatttt ttaatctcat tttcactaca aacacaagaa
     1081 agatttttag aaaataaatt tccgcaagga caaggatttt gggcagctat aaagctaaat
     1141 tttgtttcat aagtgatttt agaatttact cttgaaatat gaattttatg atcctctaaa
     1201 ggctctctta aactctctat gatttgcttg ttaaaatgtg gaaattcatc aaaaaacaat
     1261 actccaccat ttgcaagtgc gacttctcca attctagcat tttttgttcc tccgccaaaa
     1321 atacttgctc ttgtagaagt atgatgagga tgacgaaaag cacgaatttt agtaaattca
     1381 caatcttttg aatctaaaga catataagca ttttgcatta aaacttcact taaactttga
     1441 ggaggcatga tataaacaag gcgtttagca cacatacttt taccacttcc tggacttcct
     1501 tcaaataaga tattatgcat acctaaagca gctatcatac aagctctttt ggctttttcc
     1561 tgtcctttga tatctttaaa atcaagttta aaatccatat tttgtaaaaa aatttcattt
     1621 tctatttgta aagggcttgt gaataaagga tgattgtgag aaaaacgaaa attttcataa
     1681 tttttttctt taaaaaactc tattgcttca tttaaatttt caagtccata aacctctaaa
     1741 tttggtatca tggaagcttt ttgtgctata ctttttggaa caacaatttt agctttttta
     1801 attttagcag agagaaacaa aagcaaagaa aaaagctcat ttgtgctttt aatacttcca
     1861 tcaagtccta attctcctac tacaaaaaag tcatctaatt cttcattttg caaaaggatt
     1921 aataaagcga tagccaaatc aaaatgcgat cccttttttg ggatgcctga aggactaaga
     1981 ttgatagtaa tttttttagc aggaaaagca aaatcacaac ttaaaagtgt ggctttgatg
     2041 cgttcgacac tttccttaat cgctacactt gcaagtccta ctatgcttaa atttggcaaa
     2101 cctcttgtaa aagtggattc tacctctata atgtctaagc cttcatgaaa gcttatgcac
     2161 tttagttttt tcatttctct tttttatgat ttttcttctt tttcttaaat tctttatcga
     2221 atttttgacg cttagcaaaa gaaatttttt ctataaataa atgtccattc aaatgatcat
     2281 tttcgtgttg aatagccaca gctaaaaaac cttttgcttc aagttcttta aattctccaa
     2341 agcgatcttg atatttaagc aagatatgat tatagcgttt cacttcttca aaaaaatctg
     2401 gcacactcaa acacccttcg gtacaagtga tcatttcttc atctaaagga ataatttcag
     2461 gattgataat ctctagcaaa tcttcttttt tttgttcatc attttcatca aaaatattta
     2521 caagtaaaac acgcaaagga atatccactt gaatagccgc taaacctact ccattacttg
     2581 ctatcatagt ttcatacata tcatcaagca aggtgtgaag ttctgtatca aatttattta
     2641 caatttcaga gtttaaaaaa agtctaggat taggataagt gataattttt ctaaccatta
     2701 aaaaaccttt gttttaaatg atctccaaag aaatcattta aaactttttt ccaaaacctt
     2761 atcaatcagc ccatattctt tagcttcttg tgctgacatg aaaaaatctc tttctgtatc
     2821 ttttgctatt tttgcaactt tttgcttagt attttttgcc aaaatatcat taagtatagt
     2881 tttaagtctt aaaatttctt tggcttgaat ttcaatatct gtggcttgac ctctagctcc
     2941 acctaaaggt tgatgaatca taatgcgtga attaggcaaa gcaaagcgtt ttccttctgc
     3001 gccacaacta agcaaaaatg ctcccatcga agcagcttgt cctatacaaa tcgtacaaac
     3061 atcaggtttg atatagttca tagtatcata aatactaaaa ccacttgtaa ttacaccacc
     3121 tggagaatta atataaagat aaatatcttt tgtaggatct tcagcttcta aaaaaagaag
     3181 ttgtgctacg atagaagcag caagttcatc atgaatttca ccacttaaca taataattct
     3241 atcttttaaa agacgtgaat aaatatcata acttctttca ccacgactag atttttcaat
     3301 aacataagga ataaacatta tttatcttct ttctcttttt tgctcgcttt ttccgatttt
     3361 tctgtttttg gcataaaaat atcattaaaa agtttttctt caatcaaagc cattttcaca
     3421 gcaggtaaag ctccttgttt tttatagttt tctaaatgct cttttggatt cataccatag
     3481 cgatatgctt caaaataaat cgcttgaatc aattcttgat catttacttc aatcttacgc
     3541 aattttgcaa gctcatcaat gataaaagta agttttacac ttttttgcgc ttcttcttta
     3601 aaagaatcac gtttttcttg gtatttttct ttacttgctt taagctcttc aatttctttt
     3661 tcgctaaaag tattaaaagc cgcacgcatt tgcatatcag tttcttgttc tactatgcct
     3721 ttaggtaaat caaaattata tttttcaatc aaagcatctg caaatttgcc ttttaattca
     3781 tcatttacaa gtttgaaaag tttttcattt ttgatttgct cttttaattt ttcatctaaa
     3841 acttcaacac tagctttttc ttctcctggt aaaagttttt taagcatttc atcatcaagt
     3901 tctggaattt taagctcttg aatctcatgt agttttactt taaatactgc atctttaccc
     3961 gctaaatgcg ccgcaccgta ttctttaggg aaagttactt tgatatcttt ttcttcacct
     4021 attttcattc ccaccatacc atcttcaaaa cctggaataa attgcttaga accaatttct
     4081 aaaacataat tttcagcttt accaccttca aaagctttat catccacaaa accttcaaaa
     4141 tcaaattttg caaaatcacc ttcttttaaa gctctttttg tttttatagc ttcaggagta
     4201 gcaaaacgct ttaaaagttc atcttttttc tcatcaattt cttttttact tacttttgga
     4261 gtttgatatt cagggataag tttttcataa ccatcaagtt taatttcagg tttaaaagaa
     4321 agtattaact cagcaataat ttctccatct ttacgatcaa atttttcaaa atatggctca
     4381 cctacaagct ctttactttc ttttttaagt tcttgtaaag cactatttac agcggattta
     4441 aaaagatttt gttctgcatc ttgagtgagt tctctttcat atcttttaag tacagcactt
     4501 acaggaactt ttcctggtct aaaaccgtcc atttttacac ttttagaagc tttttttgct
     4561 aaattttcta cttcactttt gatcattcct gaaggaattt ttacactagc agtcgcatta
     4621 acagaatcta gttgctttgc ctttacttcc atagtttttt tccttataaa ataaaatttg
     4681 ctttcaatga tagcaaattt ttccttattg cttgcataaa attttaaagt aatttatgat
     4741 aaaattgcaa tattacatta ttattaaaat ataaaaatat tttttggaga aaaatttgca
     4801 aaaaaaattt gaagattgtg ttaaaaccat acttgaaatt ataggagaaa atccaaatcg
     4861 tgaaggactg attaaaacac caaatcgtgt ttttaaagct tatgaatttc ttactagtgg
     4921 ttatacacaa aatgtcaaag aaattttaaa tgacgcttta tttgaaagct ctaataatga
     4981 aatggtttta gtgcgtgata tagaatttta tagtctttgc gaacatcatc ttttaccttt
     5041 ttttgggcgt gctcatgtag cctatattcc taataaaaaa gtagtgggtt taagcaaaat
     5101 tccacgcctt gtagaggtgt ttgcaagaag acttcaaatt caagaacaac ttaccgaaca
     5161 aatcgcacaa gctttaatgg aaaatgtcga tgccaaaggt gttggcgtag tcatagaagc
     5221 aagacatatg tgtgttgaaa tgcgtggagt acaaaaagct aattccacca ctacaacttc
     5281 agctttgcgt ggaattttct taaaaaatga aaaaactaga gaagaatttt tttctctcat
     5341 aaactctgct aaacaggtaa gattttaatg aatcttgaaa aactacgctc caaacttggc
     5401 aaagaaaatt taagtgctat ttttggagag attacaaaaa tttctgctac gagtatagaa
     5461 attcgtgggc ttaaaacagg ggttggagat atagtgaagc tagtttccaa tgaaaatgaa
     5521 aatttaaaca ctctagctat ggtcgtagaa atcaaagaac aatttagcta tttaagccct
     5581 ttttctttta tagagggttt taaaataggc gatcgtgctt tcataagtga tgcaggtatg
     5641 caaataggcg ttagcgatga acttttaggc agggtagtag atccttttat gcgtccaaaa
     5701 gatggtaaag gagctataga agtaagtaaa tatatgccta taatgcgtgc acctattgat
     5761 gcgatgaaaa gagggcttat agaagaagtt tttcccgtgg gtgttaaaac catagacgca
     5821 cttttaactt gtggtgtagg gcaaaaactt ggtatttttg caggaagcgg agtaggaaaa
     5881 tccactctta tgggaatgat agttaaaaat tccaaagctc ctataaaggt agtggcactc
     5941 ataggagaaa gggggcgtga aattcctgaa tttatacaaa aaaatttagg tggaaagctc
     6001 gatgatacag tgattattgt tgctacaagt gatgatagtg ctttaatgcg taaatacggt
     6061 gctttttgcg caatgagtgt ggcagaatac tttaaagaac aaggtaaaga tgtacttttt
     6121 atcatggata gtgtaacacg ttttgctatg gcgcaaagag aaataggact agctcttgga
     6181 gaacctccta caaccaaagg ttatccacca agtgttttaa gtcttttgcc tcaactcatg
     6241 gaaagaacgg gtaaagaaga aggtaaaggc actataacgg ccttttttac cgttttggtg
     6301 gatggcgatg atatgagtga tccaatcgcc gatcaaagtc gttctatctt agatggacac
     6361 attgttttaa gtcgtgaatt aacagacttt ggaatttatc ctcctattaa tatacaaaac
     6421 tctgcttcaa gggtaatgag tgacattata agtcctgagc ataaactttg ggcaagaaaa
     6481 tttaagcgtt taaactcgct tttaaaagaa aatgaagtat tgcttcgcat cggtgcttat
     6541 cagaaaggaa gtgataaaga acttgatgaa gctatttcta aaaaagaatt tatgcaaaaa
     6601 ttcttaggcc aaaatcctga agaaagcttt gaatttaatc aaactttaga gcttttaagt
     6661 caaattgata caccaaatac tcctttgcca ccaactcaaa atataaatgt aggaagtgca
     6721 agtgcaacct tgcctaatcc taatttaaaa taaaattatt taataaaata atctccatca
     6781 aaactgatta aagaatattt tctttcatcg cctatgcttt gagttaattc ttctatactt
     6841 aaaaaactta gcgtatcggc ttctacatat tcacgcactt cttcagtatt tttatttgca
     6901 ctgataagtt cttcaaaagt tggagtatct atgccataag tatcaggaaa cttgatttca
     6961 ggacaagcta tggcaagatg gattttgctc gctcctgcag cacgaagtaa agaaattatt
     7021 tttttagaag tagtgccacg caccaagcta tcatcaatga ctactatttc tttgccttct
     7081 aaaactttac gcataggatt aagctttaat tttactttta aatttctaag ctcttgagtt
     7141 ggctctataa aagttcttcc tacataatga tttcttacta ttgccatttc aagagggatt
     7201 tgtaaatatt gagcaaaacc tatagctgca cttactccac tatctggcac aggcacgaca
     7261 aagtctgctt tataagcaaa ttttttagct aaagcttcgc ccattttttt acgcacttca
     7321 tacacgcttt tgccttctac tatgctatca ggtctagcaa aataaatgta ttcaaaagcg
     7381 caaattctag gagtttgaga aaaaagttct atgctttcaa atttatcatt tccctgagta
     7441 aaaataagca tttctcctgg tttaacatca cgaataaatt cagcctctat aagatcaaaa
     7501 gcacaagttt cactagcaac tatatagcct ccatctttta aacgccctaa agacaaagga
     7561 cgcaccccat gaggatctct tacaacataa agtttatctt tgcttgctaa aacaaaacaa
     7621 taagctccta tacattcttt taaactctca ataaatctat cttttagact ttcttgctta
     7681 cttcttgcga taagatggac aacattttct gtgtccatat tggtttgaaa aatagcccca
     7741 tcttgaataa gtcttgatct tacctcttct ttattgacta aatttccatt atgcgctaaa
     7801 gcaatatcac ctaaaactga agtagctgct atgggctgag cgtcatttaa acttgaattt
     7861 cctgctgtag aatagcgatt atgccctata gcgatttcac cctctaaagt ttttagatta
     7921 tcaggattaa aaatttgact cacttcacct ttggctttaa tagtcttaat atttttacca
     7981 ttgcttacac tgataccact tgcttcttgc ccacggtgtt gcatagcaaa aagcgcataa
     8041 tacgcataag tgctagcatt ttttgaattg ataactccta caactgcaca cattttaaat
     8101 tcctaaaaaa tcattaattg aatacatttt tgcttcttgc ttactaagcc aaatagcgat
     8161 tttaatcgca cctttagcaa aagttgccct tgaagtagcg gtatgattaa gttctaaaaa
     8221 ctcaccatct tcataaaaac ctactgtatg gcgtcctact atatcgccac cccttaaact
     8281 catcacagca atctcatctt tgcttctttc acctatgatg ccatctcttc cacttactct
     8341 tactttttca agttctaaat ttctagcttt tgctacactt tgggctaaag tcatagccgt
     8401 accacttggt gcatcttttt tatggcgatg atgcatttct aaaatttcta tatcaaaatt
     8461 ttttaacatt tgacttgctt tgctagcaag atagtttaaa actgcaacac ctaaagacat
     8521 attggtcgca taaaaaatcg gcatcacttc actagcactt tgcatcaaat gtaaaatttt
     8581 ctcatcaagt cctgttgtac ctattaccaa aggtttaggc atagttcttg cataatttaa
     8641 aagctcatga gttccacttg gggaagaaaa atcaataatc acatcacttt tttcaaaaag
     8701 ctcttctaaa tttccaccct tatcataaag tatcgaaatt tgtgcttgtg tttcgctttt
     8761 taaacattct tcaatctgtt ttcccatgcg tcctttagcg ccataaattc ctattttaat
     8821 catctttttc c
//
LOCUS       DAEDTT010000064         8794 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.064, whole genome shotgun sequence.
ACCESSION   DAEDTT010000064 DAEDTT010000000
VERSION     DAEDTT010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8794
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.064"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(37..366)
                     /locus_tag="KLC54_001156"
     CDS             complement(37..366)
                     /locus_tag="KLC54_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HBD9177528.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            complement(363..1637)
                     /gene="hemL"
                     /locus_tag="KLC54_001157"
     CDS             complement(363..1637)
                     /gene="hemL"
                     /locus_tag="KLC54_001157"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HBD9177529.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQACHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            complement(1634..1981)
                     /locus_tag="KLC54_001158"
     CDS             complement(1634..1981)
                     /locus_tag="KLC54_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177530.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGA
                     DGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            2061..2909
                     /gene="folD"
                     /locus_tag="KLC54_001159"
     CDS             2061..2909
                     /gene="folD"
                     /locus_tag="KLC54_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HBD9177531.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            2919..3767
                     /gene="lepB"
                     /locus_tag="KLC54_001160"
     CDS             2919..3767
                     /gene="lepB"
                     /locus_tag="KLC54_001160"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HBD9177532.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGPQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDEFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPTYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(3789..4949)
                     /locus_tag="KLC54_001161"
     CDS             complement(3789..4949)
                     /locus_tag="KLC54_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HBD9177533.1"
                     /translation="MKNIFETLKDLEDQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKAPKQYNAYRYKGEELKKGEILLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNTNALSLLTMLQNTSYLGIIKDNF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GKNFVLILPGNPMAAYLSCFIFAKKIIALLSGNLDNPLKFHATMGMDLKLKSGRNNLI
                     LGNLEKDIFTPFNENKFGSGMILPLIKSEFLLISEENTSELKKGDEITLLKI"
     gene            complement(4946..6202)
                     /gene="murA"
                     /locus_tag="KLC54_001162"
     CDS             complement(4946..6202)
                     /gene="murA"
                     /locus_tag="KLC54_001162"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HBD9177534.1"
                     /translation="MTYLEIEGTNHLSGNVTISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGTD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLI
                     AEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKGLGAKITRLEE"
     gene            complement(6268..6696)
                     /locus_tag="KLC54_001163"
     CDS             complement(6268..6696)
                     /locus_tag="KLC54_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177535.1"
                     /translation="MQINNSLNSLSQYVKVNSNEENQNSKNQEQNALAQDPAVEVNIS
                     KEAKEKSNTSNQNNSQAPAQALNAQNNTQQDSSSDSEDKLTELTQKLAEIQAKIVELT
                     AKMSKANEDQIKSIESQIATLNAQASTIQAQIQELQSQQA"
     gene            6791..7663
                     /locus_tag="KLC54_001164"
     CDS             6791..7663
                     /locus_tag="KLC54_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HBD9177536.1"
                     /translation="MGVFLVLLGGIFWAISGVLAEYLFKNNYSVDWVCFYRLLSTGLI
                     LIFLSFKAQKILVFTNLKESLSICMFGFFGLLLTQFGYFKAIYYTDAGTATMIQYCAP
                     LIIMLYLCFKNKKFPKLIEIFALILIIFALFLLATKGDIEAVVLNYWGIFWAVIGAFG
                     VAFYSLSAREVILKYGLFWIMGWASLFASFVFLLILQFDKGLIHYAFNLKAFFSMGGI
                     VFIGTIGAFCLYLKGVEYIGALRASMIASIEPVAAALMSFLFLKTRYSLLDIFAFVLI
                     ILSVILNAKKTKAS"
     gene            complement(7650..8216)
                     /locus_tag="KLC54_001165"
     CDS             complement(7650..8216)
                     /locus_tag="KLC54_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HBD9177537.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELGFECKVIKNDAFKKAKELEK
                     FDFTHLIISPGPHSPKESKLSLKAIKYFKKNKKILGICLGHQCIAEIFGGRVSKMQNP
                     MHGKISKLYFKKDPIFKGIKKEIEICLYHSLHISSMPKKCKILAHNSENIIMAIKHKK
                     YPIYGLQFHPEAVLTQKGKKILKNFMKL"
     gene            complement(8213..>8794)
                     /locus_tag="KLC54_001166"
     CDS             complement(8213..>8794)
                     /locus_tag="KLC54_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HBD9177538.1"
                     /translation="YNILNQKSSYKEYQNFTLFKLDEKIFHKKHSLFYNFPLPFKNPH
                     KEGILKLILYKDGRYEFQQSALKQNSNDILLLSDDKINSKSDNLYHKSSLRTFYNQHS
                     YKWQQNLCYDIAFFNEKDELCEGSRTNLILEKNTQFYTPQIQSGMLNGVYRNFLINLG
                     LIKEKALFKQDLFEAENIYCINSVRGLKKVKLQ"
BASE COUNT         2731 a         1304 c         1431 g         3328 t
ORIGIN      
        1 tggcaaaaat acaaaataga gcttttttat gtttcattat ttgttctttt ctttttgaat
       61 tttttctttg atcaactcat ctctttcttt aaattcttca tagcttttta cttgaacttt
      121 ataagctttg taaacattaa gtatggcagc actgatcccc caaaaaactc caagccaaaa
      181 aagccaagga taaggagtaa attttttaag taaatatcct attcccacac ctataaatac
      241 agcaacaacc atagagatgc caagacttaa accatccgca gcttcaagag ttttgcgaat
      301 gattttttgt cttttgctgt tggaattttc taagtgattt ttttcttctt ttaaaatatt
      361 actcatattc ttttaaagct ttccctaaca gcctctagtg ttgtatctat aattttatca
      421 tccatttttg aacatataaa gcctgtttca aattgagaag gtgctaaata aattccattt
      481 tcaagcatat ttttgtgaaa ttttgaaaat aatgctagat cagattttaa tgcatcttgg
      541 tagtttgata caggatcttt ggtgaaaaag tatccaaaca tagaacctac atgacaagct
      601 tgcagcggaa gtcctttttc atctgctaat tttttcattc cttgggtaag tttttttgct
      661 aattttccaa gtttgtcata aagcttggtt ttctttttgg cttttgtaag acttgctata
      721 cctgcagcca ttgccaaagg atttccactt aaagttcctg cttgataaac tccacccaaa
      781 ggacttaaaa tatccataat ttcagctcta gaagcaaatg ctgctgcagg tagaccgcct
      841 cctattacct taccaaaagt aattatatct gcttggatat gattgattcc ataggaacca
      901 aggtaagatg ctctatatcc actcattacc tcatcaaaaa tcagcagagt ttgattgttt
      961 ttacagatct tagcaagttc ttctaaaaaa tcttgtttag ctggaactaa ccccatattt
     1021 ccagcaatag gctcaatgat aacacatgca atatctttat ttttttcaaa aagctcttta
     1081 acgctattta tatcattata tttagctact aaagtgtgtt tagctacatc ttctaaaaca
     1141 cccaaagaac taggagagtt aaaagtagca gcaccacttc ctgcactcac taataatgaa
     1201 tcagaatgcc cgtgataaca tccttcaaat tttaaaattt tgtctttttt agtaaaacca
     1261 cgggcaagac gaatagcact catggttgct tctgttccac tgcttacaaa gcggatcttt
     1321 tctaaatgag gaaaatcaga taaaacaagc ttggcaagtt cagtttctaa taaagttgga
     1381 gctccaaaac ttgaaccttt atgaagtgct ttttgacaag ctttttgtat atctttatcg
     1441 caatgtccaa aaagtaaagg cccccagctt tgaacatagt ctatataaga atttccatct
     1501 atatcgaaaa tataagcacc ttttccatga gaaataaatt ttggctcact ttgaacattt
     1561 gcaaaagcac gaactggaga atttacaccg cctgcgatga atttacacgc ttctttaaaa
     1621 gcttttttgt ttgtcatttt tcttccttgc taaattgctt gatgtaatta tataaagtta
     1681 caatttcatc atttgttaaa gagtaatttg gcatgattga ttttgcgtct ttactctgat
     1741 taagagaatt tttaaaattc tcaaaactaa gattttgtat acttggaact ttataagctg
     1801 ttttaatacc atttttcata taatatccta aaatttgttc gcttccatct gctccatgac
     1861 attctttaca actaatgccc cttggatttt cataaagcat tttagagtat tctttaagag
     1921 tgataaaatc agcaccaaaa agactgatac taaataaaaa aaacattaaa acaattttca
     1981 aagtttcacc ttgttaatga agttttaata tgatacaatt tttactttaa aaaagtgatt
     2041 aaatttatag aaggaaaata atgactttgc ttgatggtaa agctttaagc gcaaaaatca
     2101 aagaagaatt aaaagaaaaa aatcaatttt tgaaaagcaa agggattgaa agctgtttag
     2161 ctgttatctt agttggagat aatcctgcaa gtcaaactta tgtaaaatct aaggctaaag
     2221 cctgtgaaga atgtggaatt aaatctttag tttatcatct taatgaaaat actacacaaa
     2281 atgaactttt ggcattgatt aataccttaa atcacgatga tagtgttcat ggaattttgg
     2341 ttcagcttcc cttacctgat catatttgta aagatttaat acttgaaagt attataagta
     2401 gtaaagatgt tgatggcttt catcctatta atgtaggata tttaaattta ggcttagaaa
     2461 gtgggttttt gccttgtact ccacttggag ttatgaagct tttgaaggct tatgaaattg
     2521 atttagaagg aaaagacgct gttattatag gtgcttcaaa tatagtaggt cgtcctatgg
     2581 ctactatgct tttaaacgct ggagctacag taagcgtttg tcatattaaa accaaagatt
     2641 tgagccttta tactaggcaa gctgatttga ttatagtagc agcaggttgt gtgaacttac
     2701 ttcgatcgga tatggtaaaa gaaggagtga ttgttgttga tgttggaatc aatcgtcttg
     2761 aaagtggaaa gatagttgga gacgtggatt ttgaagaggt atctaaaaaa tctagttata
     2821 taactcctgt tccaggtgga gtaggtccta tgactatagc catgctttta gaaaacacag
     2881 ttaaatctgc taaaaataga cttaattagg gaaaatctat ggaaatttta aagaaattat
     2941 ataaattttc acagtcttgg actggaactg tagttattgt tcttttggtg atttttttct
     3001 ttatacaagc ttttgttatt ccttctggtt ctatgaaaaa caccttgttg gtaggggatt
     3061 ttttatttgt taaaaaattt agctatggta tcccaactcc tcatattcct tggttggaaa
     3121 ttcctgtttt gcctgatttt aataaagatg ggcatttgat aaaagcacaa gggccacaaa
     3181 gaggagatat agttgttttt agaaatccta gaaatgaaaa agaacacttt gtaaagcgtt
     3241 gtgtaggcac aggaggagat aggatagttt atgcaaataa aacactttat gtaagaatgc
     3301 atgagggtga tgaatttatg aaagaacatt atccgaatga tcttgttact cttggagggc
     3361 aaatttatgt aaaagaacct tataaacaaa aaggtattca ttatgatcca aaaaaagata
     3421 tagaaagcga tattttacgc tttcttagca taggtgattt tgccatgtct ccaacttata
     3481 ttaaagaact tggaaatcat ataggtttta gcggcggaaa tgcttatgtt tttgatgtac
     3541 ctgaaaatga gtatttcatg atgggtgata atcgcgatta ttcttatgat agtcgttttt
     3601 ggggttctgt tccttatagg ttgatagtag gtaaaccttg gtttgtatat ttctcttggg
     3661 ataaagataa aaatgttcgc tgggaaagga tagggcgttt tgttgacacc ttggaaaatg
     3721 atgaacaata tatccatgat catgatgatg aggataaatt aagctaatgt ttgtgaaaaa
     3781 cacaaacatt atatttttaa aagcgtgatt tcatcacctt tttttaattc acttgtattt
     3841 tcttcgctta taagtaaaaa ctcactttta ataagtggaa gtatcatacc agatccaaat
     3901 ttattttcat taaatggtgt aaaaatatct ttttctaaat ttcctaaaat gagattgttt
     3961 cttccacttt taagctttaa atccataccc attgtagcat gaaattttaa aggattgtct
     4021 aggtttccac ttaataaagc aataattttt ttagcaaaaa taaaacaaga aagataagct
     4081 gccataggat ttcctggtaa aatcaatacg aaatttttac cctttctata aagtttagta
     4141 ggtcttgcag ggcgtgcttt tagtccttta aaaagcggag taaagcctaa ttcatctaaa
     4201 gctttttcca taaaatcagc ctcgccaacg cttgcacctc ctgaagtgat taaaagatca
     4261 aaatttgtat tttctaaagc ttctttagtg cttttaaaat tatctttgat gatgcccaaa
     4321 taagaagtat tttgaagcat ggttagtaaa gacaaagcat tggtattata aatactttct
     4381 tcatcgcatt cttgccaagg ttcttttagc tcatttccac ttgaaaaaat acctatacga
     4441 atttttctta tgacttctat tttataaagc ccttgagaag caagcagggc gatatgttta
     4501 tcattaagtt tggtgccttt ttgaagtaaa atttcacctt tttttaattc ttcgccttta
     4561 tagcgatagg cattgtattg tttaggagct tttttaatga tgagtttatt ttcttctata
     4621 tactcatctt ctaacattaa gatagtatca gcatttttgg gcattttagc ccctgtcatg
     4681 attttatagc attcattttt agcaactgta taaaaatttt tatctcctgc aaaaatagtc
     4741 cctttaatct ccaaagcttc attgatatca gtataattaa aagcatagcc atcaagagca
     4801 gcattgtcaa aactgggtaa attttttcta gcgtataaat ctttagctaa aattctatct
     4861 tttgcttttt caaggctaat aagttcactt tcatctaagc atgaaatttg atcttctaag
     4921 tcttttaagg tttcaaagat atttttcatt cttcaagcct tgtgatttta gcccctaagc
     4981 ctttaaattt ttcttctaaa ttttcataac ccctatcaag atgataaatt ctatggactt
     5041 tgcttgtgcc tttagctgca agagctgcta agataagggc tgaagaagca cgcaaatctg
     5101 tagccatgac atcagcagcg ttaagttctt ttccgcctac tatagtagca atatgaccgt
     5161 tgagtttaat atccgcaccc attcttaaaa gttcacttac atgcatgaaa cgattttcaa
     5221 atagtctttc atcgataata ctagttccat tagcttttaa ggctaatgcc ataaactgcg
     5281 cttgcatatc ggttggaaag cctggatatt cacttgtcat gatttctaca ggtttaattt
     5341 ctttagcagg aagtagggtg atactatctt ctgcaatcaa agtttcaaaa cccatttgat
     5401 gaagttttgc taaaactgca ctaagatgag tggcattaac tttatctaaa gtaattttag
     5461 aatttgtaat agccccagca caaagataag ttcctgcctc aattctatca ggtataacgc
     5521 taaattcttt aaattctaaa agttctccat cagtgccata aatttcaagt tcatctgtac
     5581 ctatgccttt aatttcaagt cctgcgtctt ttaaaacttc gcaaagttga actacttcgg
     5641 gttcttttgc aacatttaag agtttggttt tacctttagc tagagctgct gccatgatga
     5701 tgttttcact acctgtaacc gtgattttat caaaaagaat ttcattgcct tttaaatttc
     5761 cactagctac gacatagcct tgtttgattt gtatatttgc ccccattttt tccaaggcta
     5821 aaagatgtaa atcaataggt ctttgtccta tggcacatcc accaggcaaa gatacttcac
     5881 aatgcccaaa acgagcaagt aaaggcccta gagtaagtat ggaagcacgc attttacgca
     5941 caatgtcata cttggctatg gtttgattaa gagtgtttgt gtttaataaa gcactattgt
     6001 tttgaaaatt gaccttagcg cctaaatttt ctagcaaaga tataagagtt tttatatcag
     6061 caacattagg aacattgttg atttttactt catttttagc aagtatactt gaaacgatca
     6121 agggtagggc agcatttttt gctccgctta ttgtaacatt tccgcttaga tgatttgtgc
     6181 cttcgatttc tagataagtc atatttttcc ttgaaaaagt ttaaaaatgc atcattatag
     6241 cattcttaaa cttttgaaaa aatataatca agcttgttgg ctttggagtt cttgaatttg
     6301 agcttgaata gttgaagctt gggcatttaa tgttgctatt tgactttcaa tacttttgat
     6361 ttgatcctca ttagctttag acattttcgc agttagttca acaatttttg cttgaatttc
     6421 tgcaagcttt tgtgttaatt ctgtaagttt atcttcacta tcgctgctac tatcttgttg
     6481 tgtgttgttt tgtgcattta aagcttgagc tggagcttga gaattgtttt gattagaagt
     6541 atttgatttt tctttggctt ctttgctgat atttacctct acagctggat cttgcgctaa
     6601 agcgttttgt tcttgatttt tagagttttg attttcttcg tttgagttga ctttaacata
     6661 ttgacttaag ctatttaagg aattgttaat ttgcatattt tctccttaat ttataatata
     6721 tattacacta aatcgacatt atttaaaaaa aatatactat aatttaaaat aatttttatt
     6781 aaggtttgca atgggcgtat ttttagttct tttgggaggt attttttggg ctattagcgg
     6841 tgttttagct gaataccttt ttaaaaataa ttatagcgta gattgggttt gtttttatag
     6901 gcttttatct acagggttga ttttgatttt tttaagtttt aaagctcaaa agattttagt
     6961 ttttacaaat ttaaaagaaa gcttaagtat ttgtatgttt ggattttttg ggcttttgct
     7021 aacacaattt ggttatttta aggctattta ttataccgat gctggaactg caactatgat
     7081 acaatattgt gcacctttaa ttataatgct ttatttgtgc tttaaaaata aaaaatttcc
     7141 taaattgata gaaatttttg ctttgatttt gattattttt gctttgtttt tgcttgcaac
     7201 taaaggagat attgaagcgg tggttttaaa ttattggggt attttttggg ctgttatagg
     7261 agcttttgga gttgcttttt attctttaag tgctagagaa gtgatattaa aatatggtct
     7321 tttttggata atgggttggg cgagtctttt tgcttctttt gtatttttat taatcttgca
     7381 atttgataag ggtttaattc actatgcttt taacttaaaa gcattttttt ctatgggcgg
     7441 gattgtcttt atcggaacta taggggcttt ttgtttgtat ttaaaaggag tggaatatat
     7501 aggcgctcta agagctagta tgattgcttc catagaacct gtagcagctg ctttaatgag
     7561 ttttttattt ttaaaaaccc gttatagctt gcttgatatt tttgcttttg ttttgattat
     7621 attgagtgtt attttaaatg caaaaaagac taaagcttca taaagttttt aagtattttt
     7681 ttgccttttt gagttaaaac cgcttcaggg tgaaattgca atccataaat aggatatttt
     7741 ttatgtttaa ttgccataat aatattttct gaattatgag ctaaaatttt gcatttttta
     7801 ggcatagaac taatgtgtaa agaatgatat aagcaaattt caatttcttt tttaataccc
     7861 ttaaaaatag gatctttttt aaaataaagt ttagaaattt tgccatgcat gggattttgc
     7921 attttagaaa ccctaccgcc aaaaatttca gctatacact gatgtcctaa acatatacct
     7981 aaaatttttt tatttttttt aaaatatttg attgctttta agcttaattt agattcctta
     8041 ggagaatgag ggccaggaga gatgataaga tgagtgaaat caaatttttc taattcttta
     8101 gcttttttaa aggcatcatt ttttatcact ttacattcaa aaccaagttc cttaagataa
     8161 tagatgatgg tataactaaa agaatcataa ttatctataa ataaaatttt cttcattgca
     8221 attttacctt ttttaaacca cgcacggaat taatacaata aatattttct gcttcaaata
     8281 aatcttgttt aaataatgct ttttctttta tcaaaccaag attgattaag aaatttctat
     8341 atacgccatt taacataccg ctttgaattt gtggagtata aaattgagtg tttttttcta
     8401 agatgagatt ggttcttgag ccttcgcaaa gttcatcttt ttcgttaaaa aaagctatgt
     8461 cataacacaa gttttgttgc catttgtatg agtgttgatt ataaaaagta cgcaacgagc
     8521 ttttgtgata gagattgtca ctttttgagt taattttatc atcacttaaa agcagaatat
     8581 cgtttgaatt ttgttttaag gcactttgtt gaaattcgta tcttccgtct ttgtataaaa
     8641 taagctttaa aattccttct ttgtgtggat ttttaaaggg taggggaaaa ttataaaata
     8701 aagagtgttt tttgtggaaa attttttcat cgagtttaaa aagtgtaaaa ttttgatatt
     8761 ctttataaga acttttttga tttaaaatat tata
//
LOCUS       DAEDTT010000065         8601 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.065, whole genome shotgun sequence.
ACCESSION   DAEDTT010000065 DAEDTT010000000
VERSION     DAEDTT010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8601)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8601)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8601
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.065"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            1..519
                     /locus_tag="KLC54_001167"
     CDS             1..519
                     /locus_tag="KLC54_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HBD9177539.1"
                     /translation="MFAKEYTLDKAHTDVGFKIKHLQISNVKGNFKDYSAVIDFDPAS
                     AEFKKLDATIKIASVNTENQTRDNHLQQDDFFKAKKYPDMTFTMKKYEKIDNEKGKMT
                     GTLTIAGVSKDIVLDTEIGGVVKGKDGKEKIGFSLNGKIKRSDFKFATSTSTITLSDD
                     INLNIEVEANEK"
     gene            complement(524..1480)
                     /locus_tag="KLC54_001168"
     CDS             complement(524..1480)
                     /locus_tag="KLC54_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177540.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSRIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCLGKHHALILSKKNIASITTLIFIGVLSIILPRNT
                     TFNSAGLEFHFITLNFFKPVSELGFLFFLVGLILIFIKIFKTKEYYLIIAFFAAYFQF
                     LFQEGAGIRYFEFASLVFCFYLLNHAYKLAFFDILTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYAKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(1541..1750)
                     /locus_tag="KLC54_001169"
     CDS             complement(1541..1750)
                     /locus_tag="KLC54_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HBD9177541.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELL
                     ENSKKTHEELLHIEQTIQDEIAKFK"
     gene            1917..2339
                     /locus_tag="KLC54_001170"
     CDS             1917..2339
                     /locus_tag="KLC54_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177542.1"
                     /translation="MDFNSVLFSIGDKLPKDATSTVMLKKKFDRLNEDKQKEVVAQLP
                     MIKLKSPALVFWVGTFLFGAFGVGRFMIGDWVLGLIRLGITIVAMICGVLMITYSALG
                     IIYGLLWLVNWIWWIVDMFLVGKKLRKQNFEKIANIIQ"
     gene            2591..2944
                     /locus_tag="KLC54_001171"
     CDS             2591..2944
                     /locus_tag="KLC54_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002920535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177543.1"
                     /translation="MKCFNAKFMFVGILAVFLSACSSGIPKCSDQDVQNVLTEIILEH
                     NFGRFSEVDRKKLKFTYSGFMSDLTDKESKTQYCKAQVKANGSIDSRPYKWDAWIEYF
                     ARYTDDGMVYVEITR"
     gene            2994..3461
                     /locus_tag="KLC54_001172"
     CDS             2994..3461
                     /locus_tag="KLC54_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177544.1"
                     /translation="MDYNVFLLNIQDKINQEDFFNLKLKFEQLQNKKEALSNLVFLRL
                     QDPIKPLIMSMICGFLSLGWLAIDRFMIKDYALGILRIILSLFPCVLFLILGISYEND
                     SNLDISEIFFGLFGIFLLLGIIWWGVDLFLVYKKIKKQNYNKIIEFIFNYQKI"
     gene            3539..5116
                     /locus_tag="KLC54_001173"
     CDS             3539..5116
                     /locus_tag="KLC54_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HBD9177545.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADVLFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEFKGIGKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIAHAISPDTGSMHLGATIELGYFPQDTSNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
     gene            5106..5441
                     /locus_tag="KLC54_001174"
     CDS             5106..5441
                     /locus_tag="KLC54_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177546.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            5517..5900
                     /locus_tag="KLC54_001175"
     CDS             5517..5900
                     /locus_tag="KLC54_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177547.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQVEDYSSSGKSDFMDILNK
                     ADEKSSGDALNSSNSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLVQQGANEQSKNNTLLNDLLNAI"
     gene            complement(5944..6528)
                     /locus_tag="KLC54_001176"
     CDS             complement(5944..6528)
                     /locus_tag="KLC54_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HBD9177548.1"
                     /translation="MQTIDQIFQTQIDIKKSIFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIVEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNISIAIDLKNLNRFEYFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFYKNFAPFEIEKL"
     gene            6656..7882
                     /locus_tag="KLC54_001177"
     CDS             6656..7882
                     /locus_tag="KLC54_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177549.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGISTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNY
                     HFAKELALELKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQADKHDMDKKIVK
                     VKLGKYEKVYQILNYD"
     gene            7875..>8601
                     /locus_tag="KLC54_001178"
     CDS             7875..>8601
                     /locus_tag="KLC54_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD9177550.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELAIAKREWFKSKWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNITKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YAYIPDFKTLKSQFVNIKNKNYEC"
BASE COUNT         3062 a          977 c         1451 g         3111 t
ORIGIN      
        1 ttgtttgcta aagaatatac tttagataaa gcacatacag atgtaggttt taaaatcaaa
       61 catttacaaa ttagcaatgt aaaaggaaat ttcaaagatt attctgcggt gattgatttt
      121 gaccctgcga gtgctgaatt taaaaagctt gatgcaacta taaaaatcgc atctgtaaat
      181 acagaaaatc aaacaagaga taatcactta cagcaagatg attttttcaa agcaaaaaaa
      241 tatcctgata tgacttttac aatgaaaaaa tatgaaaaaa tcgataatga aaaaggtaaa
      301 atgacaggaa ctttaactat agctggagtt tctaaagata tcgttttaga tactgaaatc
      361 ggcggtgtag ttaaaggcaa agatggaaaa gaaaaaatag gcttttcttt aaatggaaaa
      421 atcaaacgct ctgattttaa atttgcgaca agtacttcaa ctattacttt aagtgatgat
      481 attaatttaa atatcgaagt tgaagcaaac gaaaaataat tttttagtct aagagtcttg
      541 ctcttagact ttgtaaattt ttatccaaat tttcttcact ttcttgccaa atcaatttaa
      601 aatccggttt aaaattttca ttttctaaat taaattccgt gtttttcaag gtggattcta
      661 aaaaagcaag atgatttaaa gcttgatttt tgtcattaaa aattaaaata aaatcatttt
      721 ctacgataaa aatttttgct ctaaagcgtt ttaaaatttt tgcaatttgt tttaaaatga
      781 gtttggcata gctttcttta gtgtctttta gttcattaaa atggagcaag gcaatgatat
      841 agttgttttt tccctttgta aagcgtgtaa ggcttttttc attaggtagc tttgttaaga
      901 tgtcaaaaaa agccaattta taagcgtgat ttaaaagata aaaacaaaaa actaaacttg
      961 caaattcaaa ataccttatt cctgctcctt cttgaaataa aaactgaaaa tatgcagcaa
     1021 aaaatgcgat aataagataa tattctttag ttttaaagat tttgataaaa atgagtatta
     1081 agccgactaa aaaaaataaa aatcctaatt cactcacagg tttaaaaaaa tttaatgtaa
     1141 taaaatggaa ttctaaacca gcactattaa aagtagtatt tctaggtaaa atgatgctta
     1201 aaacgcctat aaaaataagg gttgtaattg aagcgatatt ttttttactt aaaattaaag
     1261 catgatgttt tccaaggcaa aatagagtaa aaatcatagg taaaaacaaa gccacaaata
     1321 aattagcttg aaaaaaactt gtataaaaat aaggcaactt agctcctaat agcactaaag
     1381 tcaaaaagaa aattcttgaa tttttaaagt aaaaggatag cacaagtgct gaaatttcaa
     1441 aaataaaact caatgatatt aaaaaatcta ataaaaacat ttcaaatcct tgattttaat
     1501 aaaagtgata attgtataga aaaaagctta aaagtggact ttatttaaat ttagcaatct
     1561 catcttgtat agtttgttct atatgaagta attcttcatg agttttttta ctattttcta
     1621 aaagttcatc aaatttaaag ccaagcataa caatacgata taaattgggt ttatattttc
     1681 tccaattata taaagtgcta acatcaatgt ctagttcata tgccatatca cgcttgctct
     1741 tttttgtcat tttttacctt aaaaatttag cctttaaaaa attttacatt aaaatttctt
     1801 tattaaaaac acttgaaata ttcaatcttt tatataaaat atatttaata tttcaatatt
     1861 aattaagtta tagtatggaa taattcgaga tattttttaa ttttcaagga gtagttatgg
     1921 atttcaattc ggttcttttc agcattggcg ataaattgcc aaaagatgca acatctaccg
     1981 tgatgctaaa aaagaaattt gatcgcttaa atgaggataa acaaaaagaa gtagtagcac
     2041 agcttccaat gataaagcta aaaagtcccg ctctagtatt ttgggtaggg acttttttat
     2101 ttggtgcttt tggagtgggt cgttttatga taggagattg ggttttaggg cttatacgct
     2161 tgggaattac aattgtagct atgatttgcg gtgttttaat gattacatat agtgctttag
     2221 ggataatata tggtttgttg tggcttgtta attggatttg gtggattgta gatatgtttt
     2281 tagtgggtaa aaaattaaga aaacaaaatt ttgaaaagat tgcaaatatt atacaataat
     2341 ttcgagtttt tatgaaaaac aatcaaaaat aagtttgcaa aatattttta tcaagttttt
     2401 agtaaatttt gtttttgtgg caagtgaggt ttagaattct taagcaataa agaaaattgc
     2461 ttttaaatat tttgtctgtt gctctaaata ttgcacaggt ttttttagag attacaagta
     2521 aaatggtgaa cttggtacag atgaagagaa actaaaatat tatttaggtg aacaaaaaag
     2581 gaggaaatta atgaaatgtt ttaatgcgaa atttatgttt gttggaattt tggcagtatt
     2641 tttgagtgct tgtagtagcg gtattccaaa atgtagtgat caagatgtac aaaatgtttt
     2701 aactgagatt attttagaac acaattttgg tagattttct gaggttgatc gtaaaaagtt
     2761 gaaatttact tatagcggtt ttatgagcga tttaaccgat aaggaaagta aaacacagta
     2821 ttgtaaagct caagtaaaag caaatggaag tattgattct cgcccttaca aatgggatgc
     2881 ttggatcgag tattttgcta gatatactga tgatggtatg gtatatgtag aaattaccag
     2941 ataacttttt aaggcaaaaa tgccttaaaa agttaatttt gaggagactg gatatggact
     3001 ataatgtttt tcttttaaat atacaagata aaataaatca agaagatttt ttcaatttaa
     3061 agcttaagtt tgaacaatta caaaataaaa aagaagcttt atcaaatttg gtatttttaa
     3121 gacttcaaga tcctataaaa cctctaatta tgagtatgat atgtggtttt ttaagtttag
     3181 gttggttggc aatcgataga tttatgataa aagactatgc attaggaata ttgcgtataa
     3241 tattatcttt atttccttgt gtgttatttt tgatactagg aattagctat gaaaatgatt
     3301 ctaacttgga tatttctgaa attttttttg ggttgtttgg aatttttcta ttattgggca
     3361 ttatttggtg gggagtagat ttatttttag tctataaaaa aattaaaaaa caaaattata
     3421 ataaaattat agaatttatt tttaactatc aaaaaattta attttaaaat taaaaattca
     3481 agcctttttc gctacaattt cttaaaaatt tttataagta aaaaatttaa ggaaaatcat
     3541 ggttgaagta aaaaatctta ctatgcgttt tgcaaatcag cttttatttg aaaatgttaa
     3601 tttaaagctt gttagaggac aaagatacgg acttattggt gctaatggtg caggaaaatc
     3661 gactttttta aaaattcttt caggagaaat tgagtcaagt agtggtgaaa tagtatttga
     3721 tgaaggttta aaaatcgcag ttttaggaca ggatcaattt gcttttgaaa actacaccat
     3781 caaagatgcg gtgatgtgtg caaataagcg tttatatgag gctttaaaag aaaaagaaaa
     3841 gctttatatg agcgaggaat ttacagatga gatcaatgag cgtttaggtg agcttgagat
     3901 aataacggct gaagaagatc caaattatga ttgtgaaacg cgttgtgaaa aaattttaag
     3961 ttctttaaag attaaagatt ttgatgcttt gatgagcacc ttgcaaagtg cggataaatt
     4021 taaagtctta ctagctcaag ttttattttt gggtgcggat gtgctttttt tagatgagcc
     4081 tacaaataac cttgatttag aggcgatttc ttggcttgaa aatgagcttt taagacatga
     4141 aggaactttg gttgttatct ctcatgatag acatttttta aataaaattt gcacaaggat
     4201 tttggatgtg gattttaaac aaattcgtga ttttgcggga aattacgatg attggtatat
     4261 ggcttcaacg cttttggcaa aacaagctga gcttaaacgt gataaaacct taaaagaaag
     4321 agaagaatta gaaaatttca ttcgccgttt tagtgcgaat gcttctaagg caaaacaagc
     4381 tacgagccgt gctaaggcac ttgaaaaact agagcttgaa gagattaaaa tttcaagtcg
     4441 tagagatcct agtatagtgt ttagaaccaa tcgtgaaata ggtaatgaag ttttagaatt
     4501 taaaggtata ggcaaggctt atgataaaca actattttca aacttggagt taaaaataga
     4561 aaaaaatgat aaaatcgctt tgattggggc aaatggtgtg ggtaaaagta ctttggcaaa
     4621 aatcatcgct catgctataa gtccagatac tggatctatg caccttgggg caactataga
     4681 gcttggatat tttcctcaag atacaagtaa tttaatttgt gaaaatttga aactttatga
     4741 atggcttatg agtgaaaaat ttaaagatct agatgaaatc cgcaagtgtt taggtagaat
     4801 gctttttagt ggcagcgatc aagaaaaaat ggcagcaagt ttaagtgggg gtgaaaaaca
     4861 tcgtttaatg ctttctcgtt taatgctaga gcgtccgaat ttcttgcttt tagacgaacc
     4921 tgataaccat ttagatcttg aaagtattat tgcattgggt gaagctttgt ataatttcaa
     4981 aggtgtagtg ctttgtatca gccacgatag ggagttagtt tctgcttttg ctaatagaat
     5041 ttggcattta gaaaatggta agcttacgga ttttcgtgga acttatcaag aatttttagg
     5101 agaaaatgat ggctaaattt agaattcaat acagcgcagg ttttgggcac tatacgcaaa
     5161 atcacaaggg ttttggacct acgatttata tagaagaggt cgtagagttt gataatggca
     5221 aggattattt tgattatata gatttttata aaacttattc aaagagcgat gatacttatt
     5281 ttcatattag ttttttagaa gatagacctt taagcgataa agaaatcacg attcgcaatg
     5341 aataccgcaa aatgcgtgat gaaaactgta aaaaagccaa ggaagaattt atagctaata
     5401 atgagcttga tgtggagcat ttgcctactc atcatgattg aaaaacatta atttttgcat
     5461 aaaaaaggaa cactttttgc ttgtatagtt tttgcatatt ttgaaaggag aaaactatgc
     5521 aggtaaatta tagaacgatc agctcgtatg aatacgatgc tattagtggt cagtataaac
     5581 aggtggataa acaggttgaa gattattctt catctggaaa atctgatttt atggatatat
     5641 taaataaggc ggatgagaag tcaagcggag atgctttaaa ttctagcaat agttttcaaa
     5701 gcaatgcgca aaactcaaat tcaaatttaa gtaattatgc tcaaatgtca aatgtttacg
     5761 cttatcgttt tagacaaaat gaaggtgagt tgtctatgag agctcaaagt gctagcgttc
     5821 acaatgatct tgtgcaacaa ggtgcaaatg aacaaagtaa gaataatact ttgttaaatg
     5881 atttattgaa cgcaatttaa tcaaaagctc cattttggag cttttgtatt tacttgcaag
     5941 aatttataat ttctctattt caaaaggtgc aaaattttta taaaaaattt caaattcttg
     6001 ctcctctttt tcatttaatt tgatatgtaa tatagctttg caatccttaa aatcttttgt
     6061 gaaattaaaa gaataagttt ttaaaaaata ttcaaaacga tttaaatttt ttaaatcaat
     6121 agcaatggat atattttttt tcaattcgaa tgaaagtaaa gaagaattat taatcacggc
     6181 atttgctgca tcgctataag ctcttacaag tccccctgta ccaagtttta taccgccaaa
     6241 atatcttaca gtgattaaag ccgcattgat aagatcatag ccccttagaa catttaaagt
     6301 tggcattcca gaagttcctt taggctctcc atcatcgctt ttatcttcta caatttgatt
     6361 aaaatcattt aaaacacgat aagcatagac aaaatgaaca gcttttggat gctctttttt
     6421 tagcgtttct attaaaaatt taaaatcttt aaaagggcaa agaaaagata agaaaataga
     6481 ttttttaata tcgatttgtg tttgaaaaat ttgatcaata gtttgcattt ttgccttttt
     6541 ttgtttaaaa ttatacttat aaaaactaaa atcaatttga tgttaatttt taagatattt
     6601 gatatttata tgatttgcat tgatatttta agtttaattt tgtaaaattt tcattatgga
     6661 aaaaatcaaa aattataaac ttatcatcat tttacttagt cttgatttgt tggctttgct
     6721 ttatggaatt tcaacactga gtattagtgc tgatgaagct gatatttatt ttggtgagca
     6781 gggtaaatca cttatttttt cccatagttt gctttattat atatctcatt ttggaacttt
     6841 tatttttggg caaaatgatt ttggtttaag gcttcctttt ttattttttc attttttaag
     6901 ttgtttgctt ttgtatttgc tagctttaaa atatactaaa actaaaattg atgctttttt
     6961 ttctttattg ttatttgttt tattaccagg tactgttgca agtgctttac tggttaatgc
     7021 cgcatctttg gtgatttttt taacccttgc tatattatgt gcttacgaat atgaaaaaaa
     7081 atggcttttt tatatattat tgattatagt attatttgtt gataaatctt ttaatatttt
     7141 atttttaact tttttctttt ttgggattta taaaagaaat gctattttat ttaccttatc
     7201 tcttgttttg tttggagcga gtatcagttt ttatggtttt gatacaggtg gtcgtccaag
     7261 aggttatttt ttagatacct taggaatttt tgctgcatgt ttttctcctt tggtttttgt
     7321 gtactttttt tatactattt atcgtttgac ttttcaaaaa tataaaaatt tattatggtt
     7381 tttaatgagc gtaacatttg tattttgttt gttgctttct ttaagacaaa aacttttttt
     7441 agatgatttt ttgccttttt gtgttatttg cactcctttg cttataaaaa ctttaatgca
     7501 aagttatagg gtgagattgc cagtttttcg attaaggtat aaaatcttta tagaatgttc
     7561 tataattttt ttgatatttt gttacttttt aatcgtcgct aatcaattat tgtattattt
     7621 tataaacaat ccaaatcgtc attttgccaa taattatcat tttgctaaag aattggcact
     7681 agaattaaaa aaacaagatg ttttagagct tgcaacagcc ccaagtttgc aaaaaagatt
     7741 gcgattttat ggaataaaaa atagcaataa gttttattta aaagctttaa aacaagccga
     7801 taagcatgat atggacaaaa aaattgttaa agtaaaactt ggaaaatatg aaaaagtata
     7861 tcagatttta aactatgatt aaagctttca gtttgttgga atttgtgttt ataattctca
     7921 ttttaggtat agtttttaat ttaggcagtc tttacttaaa aaaagacaat ctattagaag
     7981 gtgcaataca aattcttaat gatatccaat atacccaaag tttagccatg atgcaagaag
     8041 gcataagagt tgatgagttg gctatcgcaa aaagagagtg gtttaaaagt aagtggcaga
     8101 tttattttat aaaatcagct gctacaggtt atgatcaaac atatactatt ttcttggata
     8161 aaaatggcga tggaaatgct aatttaggca aaactgaaat caatatagat agagaaattg
     8221 ctgttgatgt aatcaatcat aacaaattaa tgaattcagg tcaaagtgga gttattagta
     8281 aagatgatga aaaaactaca caaagattta atattacgaa aagattcgga atagaaaagg
     8341 ttgaattcaa aggatcttgt tcgggattta ctagattggt atttgatgaa atgggcagag
     8401 tgtattctcc attaaaaaat gccaattatg catatgaaaa aactttagca aagaataatt
     8461 cagattgcat tatacgtttg ttatcaaaaa agcatgctct ttgtatcgtt atagatacgc
     8521 ttagcggtta tgcttatatt ccagatttta aaacacttaa aagtcaattt gttaatataa
     8581 aaaataaaaa ttacgagtgc t
//
LOCUS       DAEDTT010000066         8581 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.066, whole genome shotgun sequence.
ACCESSION   DAEDTT010000066 DAEDTT010000000
VERSION     DAEDTT010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8581
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.066"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            67..1215
                     /gene="nspC"
                     /locus_tag="KLC54_001179"
     CDS             67..1215
                     /gene="nspC"
                     /locus_tag="KLC54_001179"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HBD9177551.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQSKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAI
                     EGLHFHALCEESADALEAVLKVFKEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQMIREFSYKDYSLRN"
     gene            1519..2232
                     /locus_tag="KLC54_001180"
     CDS             1519..2232
                     /locus_tag="KLC54_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HBD9177552.1"
                     /translation="MEALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIAMAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
     gene            2207..2398
                     /locus_tag="KLC54_001181"
     CDS             2207..2398
                     /locus_tag="KLC54_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HBD9177553.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWENYYIKAE"
     gene            2398..2940
                     /locus_tag="KLC54_001182"
     CDS             2398..2940
                     /locus_tag="KLC54_001182"
                     /inference="COORDINATES: protein motif:HMM:NF016750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HBD9177554.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKMSNEQAY
                     YVRKFAAFFGTNNVDHQARI"
     gene            2989..5202
                     /locus_tag="KLC54_001183"
     CDS             2989..5202
                     /locus_tag="KLC54_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HBD9177555.1"
                     /translation="MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIV
                     VDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREE
                     AAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQ
                     MVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYE
                     WLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQ
                     QVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQW
                     RFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRS
                     IGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTD
                     IEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQE
                     KEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDL
                     VQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYL
                     TRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHF
                     TGVMQGVDLTHNFPKGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK"
     gene            5199..5840
                     /locus_tag="KLC54_001184"
     CDS             5199..5840
                     /locus_tag="KLC54_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HBD9177556.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            5837..6769
                     /locus_tag="KLC54_001185"
     CDS             5837..6769
                     /locus_tag="KLC54_001185"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HBD9177557.1"
                     /translation="MRKVFVTLLLSVASLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRML
                     PASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            6936..7718
                     /gene="fdhD"
                     /locus_tag="KLC54_001186"
     CDS             6936..7718
                     /gene="fdhD"
                     /locus_tag="KLC54_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HBD9177558.1"
                     /translation="MDPLFTTQILKYKGDDSFTCDDTLVREIKLEIFINDERVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDVKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKARLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            7711..8448
                     /locus_tag="KLC54_001187"
     CDS             7711..8448
                     /locus_tag="KLC54_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HBD9177559.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNVNIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKAYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRALELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
BASE COUNT         3025 a         1045 c         1728 g         2783 t
ORIGIN      
        1 aaatatttat tttgaaaatt tgatttaatt ttgttatgat tttagcaatt taatcaagga
       61 aaaataatgt tttatgaaaa aattcaaact ccagcttata ttttagaaga agataaatta
      121 agaaaaaact gtgagctttt agcaagtgtt ggtgaaaaaa gtggtgctaa agtgctttta
      181 gctttaaaag gttttgcttt ttcaggagcg atgaaaattg ttggagaata cctaaaaggt
      241 tgtacttgta gcggactttg ggaagcaaaa tttgctaaag aatacatgga taaagaaatt
      301 catacttatt cacctgcttt taaagaagat gaaataggtg aaatagccag tttatctcat
      361 catatagtgt ttaattcttt agctcaattt cataaatttc aaagcaaaac acaaaaaaat
      421 tccttaggtc ttcgttgcaa tgttgaattt tctctagccc caaaagaact ttacaatcct
      481 tgtggaagat actcaagact tggaattcgt gctaaagatt ttgaaaatgt ggatttaaat
      541 gctatagaag gacttcattt tcacgcactt tgtgaagaaa gtgctgacgc tttagaagct
      601 gttttaaagg tctttaaaga gaaatttggt aaatggatag ggcaaatgaa atgggtgaat
      661 tttggaggag gacatcacat caccaaaaaa ggctatgatg ttgaaaaact tattgctttg
      721 tgtaaaaatt tcagcgataa atatggtgta caagtttatc ttgaaccagg tgaagcggta
      781 ggttggcaaa caggaaattt ggttgctagt gtagtagata tcatagaaaa tgaaaaacaa
      841 attgccattt tagatacttc aagcgaagca catatgccag atactatcat catgccttat
      901 acaagtgaag ttttaaatgc tagaatttta gccacaagag aaaatgaaaa aatttcagac
      961 ttaaaagaaa acgaatttgc ctatttactt actggaaata cttgtttagc gggtgatgta
     1021 atgggagagt acgcttttga taaaaagctt aaaatcggcg ataaaattgt ttttttagat
     1081 caaattcatt acaccattgt gaaaaacaca acttttaatg gtataagact tccaaatctc
     1141 atgcttttag accataaaaa tgaacttcaa atgataagag aattttctta taaggattat
     1201 tctttaagaa attagtatta tttataattt gcataaaata ttaattttac tcggaagaga
     1261 atcaaagata taaattttat gcaaagtatt ttattttttc aaatataaaa tcaactcaaa
     1321 tatctaattt tcaatacttt gatatgattt tttaagattt taaatccttg tggaatttta
     1381 ttgaaattca gtgattttta aatcaaatag tattaagata aatcgattta aaaatcggct
     1441 ttaaaatgaa tattaggtat attttgcata atattcattc aagcaaaatt taaagctatt
     1501 tttgaaaatt ttgaatgcat ggaggcttta atggatttgg aaaaattaag attagctaga
     1561 agtctttatt atcaatgtct aggagagctt tttgtttttt cattttctga agaaagattg
     1621 tcaaaattac aagagtattt aaagacaatg caagaatgtt tatttgatga aaatttaaaa
     1681 tcaaattttg atatcttgct taagcattta gatgatgaaa attctataca agcatttttt
     1741 aaagaatacg atttgctttt tttaagtctt aaaaacagca ttccaacgac tttttcttac
     1801 atagaagaag gttttgaaaa ttcaaatcct ttactttgcg tgcgtcaaat tttagtcaaa
     1861 agtaaaataa gacgcaatga aaaatttttt aaagaaagtg aagatagtgt tggattttgt
     1921 ttattgttga tgagtgaatt tttaaggcaa aatgaagatg atttagctaa agagcttttt
     1981 gaaaaagtga tcaataaaag cattgatgag tttttaggcg atgttttcat gaataaaaat
     2041 gcgaatttat ataaggaaat tgcaagtatt gcgatggctt ttatggaatt tgaaagactt
     2101 tgctttgaag tggaaaaacc tgcaaaaata aattctaaaa aagtgcaaaa tgatctatcg
     2161 cgttcggaat ttttaagaag agaagcaaat aaacaaagga ggactcgtga aaaatcgcag
     2221 ggaatttctt aaaaaatccg cttttgcctt aggggctgct ggagtgcttg gtagcacaac
     2281 tttagctcta gctaaagatg aagaaagaaa agatttggtt aaaggtaaaa gcaagaaaaa
     2341 agaagtgctt tttcaaagaa gtgctaattg ggaaaattat tatataaagg ctgagtaatg
     2401 tcaagtgtag gtgaaaatat caagcttacg cgtcgttctt ttcttaaaat ggcagcactt
     2461 tcaagtctag caacaccgtt gcttgctaga agtgaaactt taagagaagc gagtgctgat
     2521 gagcttaaag aagcttatga aggtagtaaa aaagtaaaaa cagtttgtac agcctgttct
     2581 gtaggctgtg ggattattgc agaagtgcaa aatggtgttt gggtgcgtca agaaatcgct
     2641 caagatcatc ctgtgagttc aggtggacat tgctgcaagg gatctgatat gatcgatatg
     2701 gtgcgttcac atgtgcgttt aaaatatcct atgaaaaaag aaaatggaga atggaaacgc
     2761 ataagttatg agcaagcttt aagtgagatc ggagaaaaac tagctgctta tcgtaaagaa
     2821 aatcctgaaa gtgttatgtt tttaggttct gcaaaaatga gcaatgaaca agcttattat
     2881 gtacgtaaat ttgcagcgtt ttttggaaca aacaatgtag atcatcaagc tagaatttga
     2941 cacagcgcaa cagtcgccgg tgtggcgaat acatttggtt atggcgctat gacaaaccat
     3001 cttggagaca ttcaaagaag taaatgtatc attatcattg gggcaaatcc agcggtaaat
     3061 catcctgtgg gttttagaca tttcttaaaa gcaaaagaaa aaggtgcaaa gcttatcgtt
     3121 gtagatccta gatttacaaa aagtgcagca aaagcggata tttatgcaag aattcgtcca
     3181 ggaactgaca ttgctttcat gtatggaatg ctaaaaatca tctttgatga aggtttagaa
     3241 gatacaaaat atcttgatga aagagttttt ggaatcgata aaattcgtga agaagcggca
     3301 aaatggacag ctgaagaggt ggaaaatgtt acaggaattt ctaaagaact tttggtgcaa
     3361 atcactcacg aagtagctaa aaacaaacca actacgctta tttgggctat gggtttaact
     3421 caacacactg taggaacttc aaatacacgt ttagcaccta ttgtgcaaat ggtacttgga
     3481 aatataggta aatttggtgg tggagttaat atcttacgcg gacatgataa tgttcaaggt
     3541 gcttcagata tggcttgttt gagcgaaaat ttaccaggtt attatccttt aaatgaagcg
     3601 acttggagat actatgccaa aatttggggt gtggattatg agtggctttt aggaaatttt
     3661 gtaagcaaag attggatgca taaaaccgga ctttcacttg ctagatggtg ggcagcggct
     3721 ttaaatggaa aagatggaaa tgatgctatc gataacgcag gaacgccttt aaaagcttta
     3781 gtagttatgg gaaatggtat cacttcgact gcacaacaag taaaagttaa agaaggtttg
     3841 gaagctttag agcttttagt tttagccgat ccttttgtaa atgaagcagg cattattgca
     3901 gaaagaaaag atggaattta tcttttacct gcagcaacac agtttgaaac aagcggaagt
     3961 gtaacagcaa caaatcgtag cggacaatgg agatttaaag ttgtagatcc actttatgaa
     4021 agcatggaag atcaagaaat tttatttgag cttgctaaaa aattaggttt ttatgaagac
     4081 tttaccaaga ctttacgcga tgaaaaaggt gagattgttt ggcctgaaaa tgcaacaaga
     4141 gaaattgcaa aagcagttag aagtataggg cttaatggtt ggagtcctga aaggcttaaa
     4201 aagcatactt tatactggga taaatttgat gaggtaactt tagaaggaaa agatgaagtt
     4261 gctggtgagt attacgggct tccttggcct tgttggagtg ataagcaccc aggttctcct
     4321 gtactttata ataccgacat tgaagtcgca aaaggtggta tgggctttag aaataatttt
     4381 ggacttgagt atgaaggaga gagtttactt gctaaaaatg cgcctttaaa ttcacctatt
     4441 gatacaggtt atccacaaat tactaaagat aatatagaaa aagttttagg tattacttta
     4501 agtgcccaag aaaaagaaaa aatgggatca acttggtctt atgatgatag caatatcata
     4561 gcaactaaat gtatagaaaa aggcatagtt ccttatggaa atgctaaagc tagagctgta
     4621 gtttggactt ttaaagataa aattccactc caccgtgagc ctttacattc tccaagaaac
     4681 gatttggtgc aaaaatatcc aagttttgaa gatcaaaaag cgctttaccg cgtggatact
     4741 aaatttgtgt ctgtgcaaca agctaaggat tattctaaag aattcccgct taatcttgtt
     4801 actgcaagac ttgtgaattt aaatggtgca ggtatggaaa atagagcatc tatgtatcta
     4861 acgcgtttaa cacctgaaat gttttgtgag atcaatcctg aattagcaaa agagcaagac
     4921 attaaagcag gagatatgat ttgggtacat tctccagaag gtactaaaat tcatgtaaga
     4981 gtgaaggtta atccaggtgt agcaaaagat atgattttct tgcctttcca ttttacagga
     5041 gttatgcaag gcgtggattt aacgcacaat ttccctaaag gaacaaaacc ttatgcaagt
     5101 ggagaaagtg ctaatacggt aacaaattat ggttatgata tcatgtgtca gattccagag
     5161 actaaaggtg ggctttgtag aatcagtaag gatggaaaat gagtaaggta aattttgcaa
     5221 atttagaaaa agaacgcttg aaattctttt gtgataatga gcgttgtatt gattgtaatg
     5281 gttgtgcggt agcttgtgat gaagcacatg agcttcctat tcatattcgc cgtcgccgtg
     5341 tgattacttt aaatgaagga attcaaggaa aagaagtttc aacttctatt tcttgtatgc
     5401 attgtgatga tgctccttgt tctatcgttt gtcctgtgga ttgtttttac atccgtgctg
     5461 atggtattgt tttgcatgat aaagaaattt gcataggttg tggatattgt ctttatgctt
     5521 gtccttttgg tgcaccacaa tttccaaaag atagtgtttt tggaaataaa ggcattatgg
     5581 ataaatgtac tatgtgtgca ggtggccctg aagcaacgaa ttcagaaaaa gaaagagaac
     5641 tttatgggca aaatcgtatc gcagaaggaa aagttcctgt atgcgctgcg atgtgttcga
     5701 caaaagcact tttagtaggt gaaagttcta aaatagaaga gatttatcat aatagactta
     5761 tgaatagaaa ttatggcatt ccaaatcctt cggaaagttt ggagtggaag attgcttaca
     5821 caggaaagga acgcttatga gaaaagtatt tgtaacgctt ttattaagcg tagcgagttt
     5881 atttgcttat ggtagcgaga gaatgggaca agatactcaa atttgggatt ttcatcgtat
     5941 tacaaatatc ccaaattatg atacttttgg caaactttgg acaactttac aaggtgaata
     6001 tatagctact atagctttaa ttgctgttat tgcggtatta tctgcatttg ctttgcatta
     6061 tatggttata ggacctaagc aattttcaca cgatggaaag aaaatttatg cttttacatt
     6121 atttgaaaga ctttttcatt ttatcgcggc aatttcttgg gtgattttag tgccaactgg
     6181 ttttgtgatg atgtttgggg cgacttttgg aggcggactt tttgtaaggg tttgtaaaaa
     6241 tttacatgct tttgcaacgg ttttatttat catctctata atccctatgt ttttatggtg
     6301 gattaaaaga atgcttcctg caagttatga tatcagatgg atgatgatag taggtggtta
     6361 tttaagcaaa gtaaaacgtc ctgtacctgc aggtaagttt aattttggtc aaaaatcttg
     6421 gtattatata gctgtatttg gtggattttt gatgataatc acaggtggat ttatgtattt
     6481 tcttgatttt aattccacgg caattcaagg tctttttggt ttaactcaaa ttgaactttt
     6541 aagaatttca gctatagtgc ataatttctt aggcatagtg tgtgcagtgt tttttggcgt
     6601 gcatatttat atggcagtat ttgcaatcaa aggcagtatc cattctatga ttagtggtta
     6661 taaagaagaa gaagaggttt atattttaca ttcttattgg tataaagaat taagcaataa
     6721 aaagcaaatt gaacctagtt tttcttatga tcctaatgta aaaatttaat ctttaaccgc
     6781 tatgttattg catagcggta gttttaagct tttttgaaat aaatagaacg aattttattt
     6841 tataagttga atctaaaatc tatttttcca tatataaatt tgttatttat gtttttttga
     6901 tataatatta tttaaagata tttaaaggat aaggtatgga tccgttattt acaactcaaa
     6961 ttttaaaata taaaggtgat gattctttta catgtgatga tactttagtg cgtgaaatta
     7021 agcttgaaat ttttattaat gatgaaagag taggtgcttt aatggcaact cctgtagatg
     7081 aacaggcatt agcaatagga tatttaatga gcgaaaatat cattgcgaaa gtaagcgata
     7141 ttgagagcat agaaacaaaa gatgatggta tgagtgtgca tattaaagca aagattgata
     7201 aagaaaattt agcaaagctt aatgctgaag gtgtagttat aagtggttgc ggtagagcac
     7261 atactgccaa tatcgatcca gaagctattg aagcgagtaa aattagttct gatgtaaaat
     7321 ttagcaaaga tgaaatttta aaacaaatga gtacttttta tactcaatgc gagctttatg
     7381 agaaaacagg ctgtgtacat acggctaagc tttttgtaga tgagaaaact ttttttatag
     7441 gtgaagatat agctcagcat aataccatag ataaagcttt aggaaaagca cgtttagctg
     7501 gggttgattt aagtcaatgt tttttaatgg ttagtggaag gctaagttct gaaatggtag
     7561 ctaaagcagt tatgcataaa attccagtac ttgtttcacg cacggctcct acttgtttag
     7621 gagttatgat agcaagaaaa tttgatttaa cgctttgtgg ttttgctaga gaaaataaga
     7681 ttaatattta tagtggagaa tttagaattc atggataaaa atcaagaaaa agaaatcatc
     7741 tcatatatga gagaattgtt aaatagtaat gaaaaattag attgtggtac ggcttttaaa
     7801 attgcaaaga aatttaatgt aaatatagaa aaaatcggac aattagccga tgaaaatcac
     7861 atgagaattg ataattgcga gttggggcaa tttggacatt tagattttga aaaagcaaag
     7921 attgaagtac ttaaaaaaat agaacctagt ttagatgaaa agcgtagaat tttttgtaaa
     7981 gatgcaagag atattgctaa agaaggttgt gggcttaaaa gtatgcgttc agctttaaaa
     8041 gcttataagg ttgatgtaaa gtattgtcaa cttggttgtt ttaaagaaaa aaaaggtaag
     8101 caatttatag taagaacaaa aacttggatt gaaaatgcgg atggagattt gctttttgga
     8161 cgaggaaaaa cagaactttt agaacttatc ggacaaacag gtagtttatt gcatgcttct
     8221 aaacttatgg ggattaatta taaaaaagct tggatgcatt tacaaacctt acaaaaaaat
     8281 tctcaagaaa tcttagttag cacaagacaa ggacgctcta aagaatcagg aactaaactt
     8341 actcctagag ctttggaatt aatggaaaat tactctattt tacaaaaaga tatagaagaa
     8401 tacgctaata aacgctttaa agaactgttt ttaaaaggaa aaaaataaat cttctatcaa
     8461 aaaatactaa tacataatat ttttataatt aattaatatt atttttttaa aaatatgtta
     8521 aaattagaat ctgaattttt tattttttag gagttataag atgtttaaat ctttaaatat
     8581 a
//
LOCUS       DAEDTT010000067         8333 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.067, whole genome shotgun sequence.
ACCESSION   DAEDTT010000067 DAEDTT010000000
VERSION     DAEDTT010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8333
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.067"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            72..1454
                     /gene="der"
                     /locus_tag="KLC54_001188"
     CDS             72..1454
                     /gene="der"
                     /locus_tag="KLC54_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HBD9177560.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVVNKVDNKKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEHYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELHLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRSHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            1441..1938
                     /locus_tag="KLC54_001189"
     CDS             1441..1938
                     /locus_tag="KLC54_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HBD9177561.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKISEIFAQKGEIFFREQEQKMADFFSSCEKTCIATGGGFVNVSNLEKVGFCIYLKAS
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYELKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            1935..2894
                     /gene="trpS"
                     /locus_tag="KLC54_001190"
     CDS             1935..2894
                     /gene="trpS"
                     /locus_tag="KLC54_001190"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HBD9177562.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTQIVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPEAKVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKMYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            2905..4140
                     /gene="serS"
                     /locus_tag="KLC54_001191"
     CDS             2905..4140
                     /gene="serS"
                     /locus_tag="KLC54_001191"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HBD9177563.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKTA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSVKVNALENELEEIAHAIPN
                     IPDECVPVGEDEDENVELKKVLNPPSFDFTPKEHFELGESLNWLDFVRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSHGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDALKKYF"
     gene            4150..6612
                     /gene="pflB"
                     /locus_tag="KLC54_001192"
     CDS             4150..6612
                     /gene="pflB"
                     /locus_tag="KLC54_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HBD9177564.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSDSGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVVMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLARLQNSYDNDKDRYKILDAYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDSA
                     DAGVYLNTSKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDTTKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPSIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(6643..7278)
                     /locus_tag="KLC54_001193"
     CDS             complement(6643..7278)
                     /locus_tag="KLC54_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177565.1"
                     /translation="MQVNTFSNIASMAQTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIGSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSGKNPLDMNTDELQQLVSEDGFFGVENTANRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQDTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(7376..>8333)
                     /gene="pyk"
                     /locus_tag="KLC54_001194"
     CDS             complement(7376..>8333)
                     /gene="pyk"
                     /locus_tag="KLC54_001194"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HBD9177566.1"
                     /translation="FPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEV
                     REILAQNNAKISIFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKE
                     IIQKANNASKPVITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGID
                     PANAVDIMCQTIIETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSS
                     GKSAIKIARYRPNIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSS
                     VEKGFMDEDKCYLLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
BASE COUNT         2900 a         1125 c         1499 g         2809 t
ORIGIN      
        1 tctagtcttt ttttgcttaa tattaagcca aattttatat aattttaaaa atataatttt
       61 ctaggaaaaa aatgcaaagc atcatactta taggcaagcc aaatgttgga aaatcaagtc
      121 tttttaatag aatggcaaga caaagaatag ctattacaag tgatatttca ggtacaacta
      181 gagatacaaa taaaacgcaa attcatattc attcaaaaaa agccatgctt attgatagtg
      241 gagggcttga tgaaagtgat gaacttttta aaaatgtgaa aaaaaacact ttaaaagtag
      301 ctaaagaaag cgatatcata ctttatctag ttgatgggaa attagcgcct gatgatgagg
      361 atagacagtt tttttattct ttaaaaaaac ttggaaaacc tatagcctta gtggttaata
      421 aagtagataa taaaaaagat gaagaaaggg cttgggagtt tgcaaatttt ggagtaaagg
      481 aaatcttcaa tctttcagta acccataatg taggcttaga tgaactttat gaatggcttg
      541 aaaaattttt acatgaagag tttttaatcc ctgatgaaga agaaaattta gaagattttt
      601 tagagcatta tgaagaagga aaagaatttc aatttaaaga agtcgatcaa aatcatatca
      661 gagtgggtat tgtagggcgt gtaaatgttg gaaaatcaag tcttttaaat gctttggtta
      721 aacaagaacg cagtgttgta agttctatcg caggaactac tatagatcct gttaatgaaa
      781 gtgtagttca taaagataaa gtgatagaat ttgttgatac tgcaggtatt agaaaaaggg
      841 gtaaaattca aggactcgaa cgctttgccc taaatcgcac ggaaaaaatt ttatctcatt
      901 ctcaaatagc acttttggtt ttagatgcgc atgagggctt taacgaactt gatgaacgca
      961 ttgctgggct tgtggctaag cattatttgg gtgtgattat tgttttaaat aaatgggata
     1021 aaagtgagat ggattttgat aaaactgtaa aagaattgca tcttgatcgt tttaaatttc
     1081 tagcttacgc acctgtgatt agcgtatcgg ctttaagtgg aaaaagggtg catgttttac
     1141 tcgataaaat tttgcaaatt tttgagaatt tcactcaaaa aatccaaact tctaagctta
     1201 atactctgat agaaaatgcc acaagatcac atcctttgcc gcatgattat gggaaattgg
     1261 ttaaaattta ttatgcagta caatacgact tagcaccgcc aaaaattgcg cttattatga
     1321 atcgtcctaa ggccttgcat tttagctata agcgttattt acaaaatcaa atcagaaaag
     1381 aatttaattt cgaaggtgtg cctttagtga ttgcttcgcg taaaaagggc agtaaagaaa
     1441 atgatgaaag ctaaaaatat cgtttttata ggatttatgg gttctggaaa aagcacttta
     1501 gcaagagctt tggctaagga tttagatctt gtttttttag atagtgattt tttaatagaa
     1561 caaaaattta atcaaaaaat cagtgaaatt ttcgcacaaa aaggcgagat tttttttaga
     1621 gaacaagagc aaaaaatggc tgattttttt agttcttgtg agaaaacttg tattgctaca
     1681 ggcgggggtt ttgttaatgt ttcaaattta gaaaaagtag gtttttgtat ttatttaaaa
     1741 gcaagttttg aatatttaaa aaagcgttta gacaaagatg aaatttctaa aagaccttta
     1801 ttttatgatg aaattaaagc aaaaaaatta tataatgagc gtttaagcaa gtatgaacta
     1861 aaggcaaatt ttattttaaa tatagaaaat aaaaatatag atgagctttt aagcgagatt
     1921 aaaaaggtga taaaatgaga gtattaacag gccttcagcc aagtggcgat ttgcatatag
     1981 gtaattattt tggtgcgatt aagcaaatgg tagatgcaca agaaaaaagc caaatgttta
     2041 tgtttattgc taattatcat gccatgactt cttctcaaga tggagaaaaa cttaaacaaa
     2101 attccttaaa agctgctgcg gcttttttaa gccttggtat agatcctcaa aaaagcgttt
     2161 tttggttgca aagtgacgtt aaggaagtta tggagcttta ttggatttta tcgcaattta
     2221 ctcctatggg tttattagag cgtgcgcata gttacaagga taaagttgct aaggggctta
     2281 gtgcttcaca tgggcttttt tcttatcctg ttttaatggc agctgatatt ttgctttttg
     2341 atacacaaat tgtccctgta ggaaaagatc aaatccagca tgttgaaatc gcacgcgata
     2401 ttgctttaaa agttaataat gaatggggtg aaatttttac ccttccagag gctaaagtta
     2461 atgaagaagt agctgtagtt gtaggcaccg atggggcaaa aatgagtaaa tcttatcaaa
     2521 atactataga tatttttagc agtgaaaaaa ccttaaaaaa acaaatttct tccatagtta
     2581 cagatagcac cgctttagaa gatccaaaag atcatgaaaa ctgcaatatt tttaaaatcg
     2641 caaagctttt tttagatgaa tcagggcaaa aagaattaca aatacgctat gaaaaaggtg
     2701 gtgagggtta tggacatttt aaaatgtatt taaacgagct tgtaaatgct tattttaaag
     2761 aagcgagaga aaaatacaat gagcttttag aaaagccttc acatttgaaa gaaattttgg
     2821 attttggtgc gacaaaagca agaaaaatcg cccaagaaaa aatgcaaaaa atttatgaaa
     2881 aaatcggact ttaaggagta gaaaatgcta gatttaaaaa atttgcaaaa taattttgat
     2941 gaagtggcta aaaagttaaa aaataaaaaa gttgatgaaa atatcttaaa aaaacttgct
     3001 gaactttttg caagtttaaa aaaagaaaaa acagctttag aagaatttca agcttttcaa
     3061 aataaattca gtaaagagct tgctacagcc gaagataaag aaagtttaaa agcaaaatta
     3121 agcgaaaata aaagcaaaat taatgagcaa agcgttaaag taaatgcttt agaaaatgag
     3181 cttgaagaaa tcgctcatgc catcccaaat attcctgatg aatgtgtgcc tgtgggtgaa
     3241 gatgaagatg aaaatgtgga gcttaaaaaa gtattaaatc cgcctagctt tgattttact
     3301 ccaaaagaac attttgaatt aggcgagagt ttaaattggc ttgattttgt gcgtggggta
     3361 aaaatttcac aaagccgttt ttgtgtgctt aagaacgaag gagctttatt aagccgtgct
     3421 ttggtaaatt atatgataga ttttaataga agtcatggat ttgagtttgt taatgtacct
     3481 tttttggtaa atggtgctac tatgtttggg acgggtcagt tgccaaaatt taaagaagat
     3541 atgtataagg tagatgatga ggatttgtat ttaatctcaa cttctgaaat tccagtaacc
     3601 aatctttata gtggagaaat tttagcgagt gaaactttac ctataaaaat gacttgttat
     3661 agcgcttgtt ttagaaaaga agcaggtagt gcagggcgtg atacaagagg tattatcaga
     3721 caacaccagt ttgaaaaagt agagcttgta agtatcacta aacctgagca aagtgatagt
     3781 gtgtttaatg aaatgcttga gtgtgcaagt gatttgctga gttctttagg tttagcacat
     3841 agacatttga tgctttgcac tggagatttg ggttttagtg cagcaaaaac tgtggatctt
     3901 gaagtgtggc ttccaggaca aaataaatat cgtgagatta gctcggtttc aaattgtcgt
     3961 gattttcaag caagacgtgc taaaattcgc tataaaaatg aacaaggaaa aaatgaactc
     4021 gttcacactc ttaatggctc atctttggca gtaggaagaa ccttggtagc gattatggaa
     4081 aattatcaag ataaagaagg aaaaattcat attcctgatg ctttgaaaaa atatttttaa
     4141 agagtataga tggctgaaca agaagatata atactagaaa aacccgaaga tggcttaaat
     4201 caaccaagac ttgatgagag tttagaggga tttaaagggc aagaggggca agctccagaa
     4261 gatgaagaat ttgcatcatt gccagaagaa ttacctcaag aaaatagtga tagtggtttt
     4321 aaatttacaa gagaaagtgc gcctgaagat gtatcaactt ttgaagaagt tgaaagtcaa
     4381 gagcctacgc cttggtataa agatcgtaag tttatgtctc ttgtgggttt atctttgggg
     4441 attatttgta ttttagtttt tacacttttt tatttaactt ttagtgaagg aaaaattaaa
     4501 ccagatatta tagcttctaa gcctttagaa caacctgttg ttatgcctga tgaatcatat
     4561 aaatacaatg atatgcaaag aattgatggt atgatccaaa aagcaaatgc tttatattta
     4621 aagggtgagg ttgaacaggc tttaaaagtt tatgagcaag ttgccgtata taacgaatct
     4681 ttatctaatt ataatttagg cgtttctcaa atgaatgaga ataaattcca agaagctttt
     4741 gaaagcttca agaaagctat agccaatgga gaaaatcaaa gtgtagctgc tatcaatgct
     4801 gctgtttgtg ctttaaagct taatgataag gaaaaattta gatattatat tgatttagct
     4861 caagtgtatc ttccaaaaga aggaaaatca aaattatatg attattattt aagcttgatt
     4921 aattattaca aaggatatta ccctgaggct ttacaaatgt tacaaagaac agatgtggag
     4981 ccgtattctg atgttgcaaa gtatttgtct gctaaaattt atgcaaaaat ggactttgat
     5041 tccaaggcta tacagcaatt aaattctcaa ggcaattttg aatctagttt atctttaggt
     5101 cttttatacg ctagaatagg agaatatgct aaagctaaag tcgctttaag tacagcgatg
     5161 aaaattgaaa gagattttaa tcaaagtttg gcggctttaa cattggttga tattaaaaca
     5221 ggaaattatc aagatatgtt agcgcgcttg caaaattctt atgataatga taaagataga
     5281 tataagattt tagatgctta taaaattcaa gttcgtttaa ataaggatct ttttaatata
     5341 gcagttgctc aaaattcttt ttcaaaagat ttgttaaaaa aacaaaaaga tcaattcgat
     5401 ttgctttttt attttgcgcc ttatcaagtt tttgatagta agcaggctgc tttatatatt
     5461 aaaaaagcta atgttacaga tttcgttgat gatagtgctg atgcgggagt ttatcttaat
     5521 acaagcaagg ctctttcatc taccaatgta aaaattgcca atattattaa ctatgcatta
     5581 aatcagaagt tacgccttgc taaccaagaa tttcaaaaac ttatcaagga ttatccagaa
     5641 catagtattt tacattataa tttggcttta acttatgccc aaatgcaaaa ttatgaactt
     5701 gcttataagc atttttcaag ttcatatcat cttaatccta aaaattactt agcaggtgct
     5761 tttgctatgt tttgtgcaaa attaattgat attgatacaa ctaaacttta caatgaaatt
     5821 cttgataata tagctgctga ttctaatttt aaagctaata tgcaaaaaag tatgttattt
     5881 ttagttaata ataattatat ttctatgctt ccttatttag atgaaacaaa aaaagacacg
     5941 cctttgagtt tgatttttga agctattgtt gctaaaaata ataaccttaa taatcaagta
     6001 gatgtgaaaa ttgctaaatt gcgttcagag ttgcctgaag atattttggc aaatattttg
     6061 tattttaatt ctttaaattc aaatttaaat attaaagaat atgctcaaaa tgctcaaatt
     6121 cattttaaaa atttaaaact tgattatcgt agtgtttttg gtgggccaag tatcgctagg
     6181 gaattttatg ttaatttaat gcatattgca gggcttttaa atttagaaag acagaaattt
     6241 aaagagttga ttaatgtttc aggagcaaaa gatgagggta ttttgcaaac tttagcttat
     6301 ttggatattt ttgcacagca atacgaggag gcttatgcgc tttacaattc tttgattgat
     6361 gattatggag ctaaagatac taaaacttta tttttagcag ccgtagcagc cgtaggtgca
     6421 aataatccaa attcagctat agcgcttttg cagctttcta aacttacaga taaaaataac
     6481 aaagaaagta aagcagctct tggtatgttg tatcaagaag taaagaacta tgaagctgcg
     6541 atatctcagt ataaaacttt acctaataat tttaagagtg aattttttac ttttgatatt
     6601 aataacaact aaaaatgctt agaaatttct aagcattttt agttaagctt gaagatctag
     6661 agtttttccg cctagttcat caatgcgatc gctaactttt ttaagtgccg catctattgt
     6721 atcttgactg atttgaggaa gttctccacc ccacattttt tctgcttgct caaatccttt
     6781 tttcatacct tcaagacctt ttttcaattt ttcaacatcg tcgccaccgc ctttaataac
     6841 aaaatccgcg atgcgattgg ctgtattttc cactccaaaa aaaccatctt cacttacaag
     6901 ttgttgaagt tcatctgtat tcatatcaag tggatttttg ccactgtagc ctaaggatgc
     6961 aaaatcaata tttgtaagta tagatttcgc agtatctaaa ttggcaccat ttaaaagact
     7021 atctagtcca gtttgggcat tgctcgaacc tattacagca ttcattgttt gctgttgaaa
     7081 ctgaactagg taaatttgtg taatgccctt tccaccaagt gcatttaatt tttcaagggt
     7141 atttttatct acatccttgc tagaattagc actttgaaca tttttgtctt ttgtgttttc
     7201 cttagcatca tctgccttct tattgctaac ttgtgtttgt gccatgctag cgatatttga
     7261 aaaagtattc acttgcatat ttgctccttt gtgtgaggct ttaatttata tcgacttttg
     7321 acttaaaaaa tttataagga cattaaattc cttattttca aaggaattta atgttttatt
     7381 gtagataata agcaatttgc tctttattga gaatgcggat aagattgcta gtaccttcta
     7441 ctcctgttgg aaagcctgca gttagaagat agcatttgtc ttcatccata aaaccttttt
     7501 caacacttga tcttacagag tcttttaata attctgtaag ttcattactt ttgttaacca
     7561 agatcgcagg attaactccc caaactatac ttaaagagtt taaggttttt tcagaatgcc
     7621 ctactgctat gatttctata tttggacgat atctcgcaat cttaatagca gattttccac
     7681 tacttgttaa agaaaaaata gcatcagcgt taagatctgt tgcaagatga gctgaagaac
     7741 gcatgatttt atctgtattg tctaaatcat taaaatcatt aaatttgtta tatggatagc
     7801 gtttttctgt ttctattata gtttggcaca ttatatcaac agcgtttgca ggatctatac
     7861 caacggcgct ttcttcactt agcattactg catctgttcc atctaaaaca gcatttgcaa
     7921 catctgaaat ttcagctctt gtggcggttt tgcttttggc taatgaaaaa agcatctgag
     7981 tcgcagtaat aacaggctta gaggcattgt ttgctttttg tataatttct ttttggatat
     8041 taggaacttt ataataaggt acctcaatac ctaagtctcc tcttgcaacc attatgccat
     8101 cgctagattt aataatctca tcaatatttt ctactgcatc aaatttttca atttttgcaa
     8161 aaatagatat ttttgcgtta ttttgtgcta aaatttcacg aacttcatca atatcgtgtg
     8221 cattttgtac gaaagatatt gctaaaaaat ctacttcatt ttttataccc caaagtaaat
     8281 catttttatc tttttgtgta ataacatcaa tattgatttt agtattcgga aaa
//
LOCUS       DAEDTT010000068         8280 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.068, whole genome shotgun sequence.
ACCESSION   DAEDTT010000068 DAEDTT010000000
VERSION     DAEDTT010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8280)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8280)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8280
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.068"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            8..736
                     /locus_tag="KLC54_001195"
     CDS             8..736
                     /locus_tag="KLC54_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HBD9177567.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLVDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            758..1537
                     /gene="peb1A"
                     /locus_tag="KLC54_001196"
     CDS             758..1537
                     /gene="peb1A"
                     /locus_tag="KLC54_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HBD9177568.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKNYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            1539..2291
                     /locus_tag="KLC54_001197"
     CDS             1539..2291
                     /locus_tag="KLC54_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HBD9177569.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            2302..2961
                     /locus_tag="KLC54_001198"
     CDS             2302..2961
                     /locus_tag="KLC54_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HBD9177570.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            3069..3998
                     /locus_tag="KLC54_001199"
     CDS             3069..3998
                     /locus_tag="KLC54_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HBD9177571.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGALDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
     gene            4165..6276
                     /locus_tag="KLC54_001200"
     CDS             4165..6276
                     /locus_tag="KLC54_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HBD9177572.1"
                     /translation="MTQLSTKILWLFVATLGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPTLAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHALAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSITPEEITTLTTNIGEHTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKVANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISTIKKEISIATQNKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            6257..6454
                     /gene="kcuS"
                     /locus_tag="KLC54_001201"
     CDS             6257..6454
                     /gene="kcuS"
                     /locus_tag="KLC54_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HBD9177573.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(6494..6907)
                     /locus_tag="KLC54_001202"
     CDS             complement(6494..6907)
                     /locus_tag="KLC54_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HBD9177574.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKRIHGFLNA"
     gene            6969..>8280
                     /gene="ciaB"
                     /locus_tag="KLC54_001203"
     CDS             6969..>8280
                     /gene="ciaB"
                     /locus_tag="KLC54_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HBD9177575.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLIDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGVHNIGLIMNIFEISWTKEIIEKNNKILSTQFPNLDDAME
                     FLRKNHLYQKTPEGEICERSYGVLVRIGNLWKFVPYARFFENEILKLEFAFENMIDQL
                     KIFASSEEEKAYIEYFEKLKLAFCEKDEDRVIKAWQEAEFAWMKVKSPLQVGHPLEYY
                     EDNYTHAVALEWDIRIEDENDFDVLKFGSEIKESFEHVYKNIGLEDCELEKEVLSNIE
                     KTQLYICAPMIFYGAELKGLFSAQVVPNDEFVSSKAGKKIFAFINFVYENAKTKPFMK
                     ISSEVFDKEFLDFGRNILFYQEKIWKRVYEVSTIGHEFGHIFFIA"
BASE COUNT         2753 a         1032 c         1578 g         2917 t
ORIGIN      
        1 aaaaaacttg attgaattaa aaaatgtaaa caaatactac ggaactcatc atgttctaaa
       61 gaatattaat ctttctgtta aagaaggtga gaagcttgtt attataggtc caagtggaag
      121 tggaaaaagt acaactatcc gttgcatgaa tgggcttgaa gaagttagtt caggcgaggt
      181 cgtagttaac aatcttgttt taaatcataa aaataaaatt gaaatttgtc gaaaatattg
      241 tgcaatggtt tttcagcatt ttaatttata tccacatatg acggttttgc aaaatttgac
      301 cttagctcca atgaaacttc aaaaaaaatc taaaaaagaa gctgaagaaa cagcttttaa
      361 gtatttaaaa gtcgtaggtt tagtggataa agcaaatgtt tatccagcaa ccctttcagg
      421 cggacaacaa caacgcgttg ctatagcaag atcactttgt actaaaaaac cctatatttt
      481 atttgatgaa cctacttcag cccttgatcc agaaaccata caagaggttt tagatgtaat
      541 gaaagaaatt tcacatcaaa gcaatactac catggtggtt gttacacacg aaatgggttt
      601 tgcaaaagaa gtagcagata ggattatttt tatggaagat ggtgctattg tggaagaaaa
      661 tattcctagt gaatttttct caaatccaaa aactgaaaga gcgcgactct ttttagggaa
      721 aattcttaaa aattaaccaa aattgaaagg agaaaaaatg gtttttagaa aatctttgtt
      781 aaagttggca gtttttgctc taggtgcttg tgttgcattt agcaatgcta atgcagcaga
      841 aggtaaactt gagtctatta aatctaaagg acaattaata gttggtgtta aaaatgatgt
      901 tccgcattat gctttacttg atcaagcaac aggtgaaatt aaaggtttcg aagtagatgt
      961 tgctaaattg ctagctaaaa gtatattggg tgatgataaa aaaataaaac tagttgcagt
     1021 taatgctaaa acaagaggcc ctttgcttga taatggtagt gtagatgcag tgatagcaac
     1081 ttttactatt actccagaga gaaaaagaat ttataatttc tcagagcctt attatcaaga
     1141 tgctataggg cttttagtct taaaagaaaa aaattataaa tctttagctg atatgaaagg
     1201 tgcaaacatt ggagtggctc aagctgcaac tacaaaaaaa gctataggtg aagctgctaa
     1261 aaaaattggt attgatgtta aatttagtga atttcctgat tatccaagta taaaagctgc
     1321 tttagatgct aaaagagttg atgcgttttc tgtagacaaa tcaatattgt taggctatgt
     1381 ggatgataaa agtgaaattt tgccagatag ttttgaacca caaagttatg gtattgtaac
     1441 caaaaaagat gatccagctt ttgcaaaata tgttgatgat tttgtaaaag aacataaaaa
     1501 tgaaattgat gctttagcga aaaaatgggg tttataatat gaatgaaagt gtaggttttg
     1561 ttgaacattt aagacaaatt cttacttctt ggggtttata tgatgaaaat agtataagcc
     1621 cttttgcggt atggaaattt ttagatgctt tggataataa agatgctttt attaatggtt
     1681 ttatttatac tttagaagta agcattcttg ctttgcttat agctacaatt tttggaacta
     1741 taggcggagt tatggctaca agtagattta aaattatcag agcctacact agaatttacg
     1801 tagagctttt tcaaaatgtt cctttggtaa tacaaatttt ctttttgttt tatgccttgc
     1861 ctgttttagg tataagactt gatatattta ctattggtgt attgggtgtt ggagcttatc
     1921 acggagctta tgtaagcgag gtggttagaa gtggaatttt ggctgtgcca agaggtcagt
     1981 ttgaagcttc tgcttctcaa gggtttactt atattcaaca aatgcgttat attatagtac
     2041 ctcaaaccat tagaattatt ttaccaccga tgacaaatca aatggtaaat ttaatcaaaa
     2101 atacctctgt attgcttatt gtaggtggag ctgagttaat gcattctgct gatagctatg
     2161 cagctgatta tggaaattat gcgccagctt atatatttgc agcggtttta tattttataa
     2221 tttgttatcc tttggcttat tttgcaaagg cttatgaaaa taaattaaaa aaagcacatt
     2281 taacgagata aaggattgtt aatggaaaat gtttttaatg cacaaaatat tgaattttta
     2341 atgcaaggtt tatttctgac attaaaaata gccttagcaa cttgtattat ttcgattgtt
     2401 tttggaactt ttttagctat aactaaaaat tatggggata gattaagtaa atttttagca
     2461 gcttgctata tagatatttt tagaaatact cctttattat tatggatgct tgcagcttgt
     2521 tttgttctac ctgtattttt tggacaattt cctcaagctt tttggggtac tataggattt
     2581 tcactttata cgagttcggt tatggctgaa attattagag gtggattaaa ttctatacca
     2641 aaaggtcagt ttgaagcagc ttattctcaa ggttttggta aattttttac tcttttttat
     2701 attattttac cacaaacttt tagaaaaata atacctgctt tattatctca aattgtaacc
     2761 actgtaaagg atacagctta tttagcgggt ttgggtatag ctgaacttac ttataattca
     2821 aaaactatat tggcaaaact aacaagtttt gaagaaattt tagcgatgat aggtgttgtt
     2881 gcgggaattt attttataat atgtttttca ctttctatgt tggtaagata ttatgccaaa
     2941 aagacagctt acatttctta aaaaagctta tatttttata taagcttttt aaatttacag
     3001 cagtttttaa catttttttt attaaaatct tttgtattaa ttcataattt tattgattaa
     3061 ggttttttat gcgaggttat aaaatttttt caggctcagc taatgtcgaa tttgcaagac
     3121 aagtttctaa atatctctcc ctgcctttaa gtgatgctgg agtaaagcgg tttagtgatg
     3181 gagagattag tgttcaaatt gatgagagtg tacgcggaaa ggatgttttt attattcaaa
     3241 gtacttgcgc tcctacaaac gataatttaa tggaactttt aattcttaca gatgctttgc
     3301 gtcgctcaag tgcaaattca attacggcta ttatcccata ttttggctat gcgagacaag
     3361 atagaaaagc aaatcctaga gtgccaatta ctgctaaact tgtggctaat ttgattcaag
     3421 cagctgggat tgatcgcgta gctacgatag atttgcatgc aggacaaatt cagggttttt
     3481 ttgatattcc agtagataat ctttatggaa gtatagtttt taatgattac attaaagcca
     3541 aacattttaa aaatgctatt ataggaagtc cagatatagg gggtgttgca agagctagga
     3601 gtgttgcaaa gcatttagga cttgatatag ttatagttga taagcgtcgt gaaaaagcca
     3661 atgaaagtga agtaatgaat atcattggag atgtaaaaga taaagaagtt atcttagtgg
     3721 atgatattat tgatactgct ggcactatag ttaaagccgc ggaagcttta aaagaaaaag
     3781 gtgcaaaatc tgttatggct tgctgtactc atgcagtttt aagtggaaaa gcctatgaga
     3841 gaatagcaag tggagcttta gatgagcttg tggtaacaga tactatacct ttaaaagagc
     3901 aattaccaaa tattaaagta ttaagcgtta cacctgtttt tgctgaagta atacgtcgtg
     3961 tttatcataa cgaaagtgta aattctctct ttatttagat taaaaaagct taaagattat
     4021 ttttaagctt ttcattttta tgctacttaa agaaacaaaa aacatatatt tttttaaaaa
     4081 tgtgaaaaaa ctaaacatct ttctatacaa tttaatctat aaatctgcta ttctttgaaa
     4141 atattttatt ttcttaggag aaatatgact cagttaagta ctaaaatttt atggttgttt
     4201 gttgcaactt taggcgctat ttgttttggt tatttagctt tacaaaatgg cgaaagtgta
     4261 tcagcgattt atttggtggt tgctgctgta tgtatttata tgataggata tagattttat
     4321 gggcgttttg tagcttataa ggttttagaa cttgataaaa atcgtgcaac accagcactt
     4381 gtagaaaatg atgggcgtga ttttgtgcct acaaataaag ctgtattatt tggacatcat
     4441 tttgctgcta ttgcaggagc aggtccatta gtaggaccta tcttggccgc tcaaatgggg
     4501 tatttgcctt ctatgctttg gattttagta ggaggagttt tagcgggtgc tgtgcatgat
     4561 tttgttgttc tttttatatc tactcgtaga aaaggtagaa gtcttggcga gatgattaag
     4621 gatgagatgg gtaaatttac aggtggagtt gctatggtgg cgatttttgg cattatgctt
     4681 attattattg ccattttagc tatggtggtt gtaaaagctt tagcagaatc tccatggggt
     4741 ttatttacta tcgcaatgac tattcctata gcaatattta tgggaattta tatgcgtttt
     4801 atccgtccag gtagagtagg ggaggcttct ataataggtt ttgtgctttt aattttggct
     4861 attcattatg gtagtgttat agctgctgat ccttattggg ctaaaatatt tactttagaa
     4921 gctccaactt tggcaattgt tatgatggct tatggtttta ttgcttctgt tttacctgtg
     4981 tggtttttac ttgctccaag agattatctt tcaacttttt tgaaaatcgg tgttattgtg
     5041 gtaatggctg tagctattgt tttggttgct cctgatttac aaatgccaaa agcaaatact
     5101 cagtattttg atggaacagg tccagtattt gcaggtggag tgtttccatt tttatttatt
     5161 accattgctt gtggtgcgat cagcggtttt catgctttga tttctagtgg aactactcct
     5221 aaaatgcttg aaaacgaaac tcatgctttg gctgttggat atggctctat gcttgctgaa
     5281 agcgctgtgg cgattatggc tttaatttgt gcttgtattt tacatccagg tctttatttt
     5341 gctataaact caagctctgc tttgatagga acagatgttg taaatgtagc acaaaccatt
     5401 tcaagttggg gatttagtat tactcctgaa gaaattacta ctttaaccac aaatatagga
     5461 gagcatacta tactttcaag aacaggtgga gctccaactt ttgctatagg tgtagctttg
     5521 atcttgcatg aactttttgg cggcgtggat ttgatggctt tttggtatca ttttgctata
     5581 ttgtttgaag ctttatttat tttaacagcg gtggatgctg ggacaagggc ttgtcgtttt
     5641 atggtgcaag atatattggg taatgtttat aaacctttag gagatattca taattatcca
     5701 gctggacttt tggctacggc tttaagtgtt gcaggttggg gatattttct ttatcaaggt
     5761 gccattgatc ctaagggagg aatttatacg ctttggcctc tttttggcgt gagtaatcaa
     5821 atgcttgcgg gtatggcttt gcttcttgct acaactatac ttgtaaaaat gggcaaggca
     5881 agatatactt gggttacttt agtacctgcg gtatttgtct tagtggcaac tctgtatgga
     5941 ggaattcaaa aaattatgcc ttatgaagaa ggcaataaag tagcaaatgc ggtaagtcat
     6001 gtagccgccg ttagcataca aagtcaaaaa attaaagatt tagaatttaa attaaataat
     6061 actaaagatg aaaaagaaat ttctacaatt aaaaaagaaa tttcaatagc cactcaaaat
     6121 aaagttggaa atttacttaa tgcaattctt tgtgtgttct ttatgatagc taccttgctt
     6181 gttataattt cttgtatagg aatttgctta ggtaaaatta aaattcctct taaagaaact
     6241 aagtatatta agattgatga atttcaaaaa atttaagtat tattatgaaa aagccgaaag
     6301 gttttttcat cccttggtgg gactttctag ttatgataag tatttagaac acatgaaaca
     6361 aaaacatcca ggaaaaattc caaaaaccag aggggaattt ttcaaagaat gtctagataa
     6421 aaaatataat agcggcggtt taaataaatg ctgataagct taaaggataa agttttatca
     6481 tacaaaataa gctttaagca tttaaaaagc catgaattct tttaagttct tcactaatag
     6541 gctttttctt tccatctctt gtaacactta cataagttac taaagccgaa gttacattaa
     6601 tgcaagaagt acaaccttga gaatccactc tttgagctgt gacttctact tcaacgctga
     6661 ttgaagtgtt gcccacattt acaactttag agtaacaaga aattatatcg cctataaaaa
     6721 caggttcttt aaaaactact ttatccatag agatggttac aacgcgttca ggagaaagtt
     6781 ctcttgctgc gatagctcct gctaaatcga tttgtgaaag tatccatccg ccaaaaatat
     6841 ttcctgctgg atttgtgtca cttggcatag ctacaatttt taattttggt tctcccatat
     6901 ctctcatttt tactccttat tttaaaaaat gaattataat taaaaaagtt aaaaaggaga
     6961 ataaaagtat gaataatttt aaagaaatag ctaaattggt tagaaaatac aaagaaagaa
     7021 ataatgcatt atatgagttt ttagacaaag aagatgtggg cgagtatttt agatctttga
     7081 tttctttaag tgagttaaaa caagataaaa caactatgct agccatactt aggcgtttga
     7141 ttgatttaaa agaagaaaat ttagttcaag agtggaaaaa aaacaacttt aaggaagata
     7201 agattataga gttaaaacat aagttctatg aagaggttag aaagttttat gaaaaagaac
     7261 atcaaaattt aattaatgaa ataaaagaga aaaagctttt aaataatttt tatcagtcct
     7321 taatacaagg agtgcataat ataggtttaa ttatgaatat ttttgaaatt tcttggacta
     7381 aagaaattat agaaaaaaat aataaaattt tatctactca atttccaaat ttagatgatg
     7441 caatggaatt tttacgtaaa aatcatttat atcaaaaaac tccagaagga gaaatttgtg
     7501 agcgaagcta tggtgtttta gttagaatag gaaatttatg gaaatttgtt ccttatgcga
     7561 gatttttcga gaatgaaatt ttaaaattag aatttgcttt tgaaaatatg attgatcagc
     7621 ttaaaatatt tgctagcagc gaagaggaaa aagcttatat agaatatttt gaaaaattaa
     7681 aattagcgtt ttgtgaaaaa gatgaagata gggttataaa agcttggcaa gaagctgaat
     7741 ttgcttggat gaaagtaaaa tcacctttac aagtgggaca tcctttagaa tattatgaag
     7801 ataattatac tcatgcggtg gcattagaat gggatataag aatagaagat gaaaatgatt
     7861 ttgatgtttt gaaatttggt agtgaaatta aggaaagttt tgaacatgtt tataaaaata
     7921 taggacttga agattgtgaa ttagaaaaag aagttttatc taatatagaa aaaactcaac
     7981 tttatatttg cgctccgatg atattttatg gtgctgaact taaaggttta ttctcagctc
     8041 aagtcgttcc aaatgatgag tttgtaagtt ctaaggcggg caaaaaaata tttgccttta
     8101 taaattttgt atatgaaaat gctaaaacaa agccttttat gaaaatttct agcgaggttt
     8161 ttgataaaga atttttggat tttggaagaa atattttatt ttatcaggaa aaaatttgga
     8221 aaagggttta tgaggtatca actataggcc atgaatttgg tcatatattt tttattgcta
//
LOCUS       DAEDTT010000069         8136 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.069, whole genome shotgun sequence.
ACCESSION   DAEDTT010000069 DAEDTT010000000
VERSION     DAEDTT010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8136
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.069"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            43..714
                     /locus_tag="KLC54_001204"
     CDS             43..714
                     /locus_tag="KLC54_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HBD9177576.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGVQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHANNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            711..1946
                     /locus_tag="KLC54_001205"
     CDS             711..1946
                     /locus_tag="KLC54_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HBD9177577.1"
                     /translation="MTKNYSIYTKLIILFVVTFFLVCVLFIVLLKIEGNAYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPHLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLRSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     SAILEEAKEHLMRDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            1946..2518
                     /gene="recR"
                     /locus_tag="KLC54_001206"
     CDS             1946..2518
                     /gene="recR"
                     /locus_tag="KLC54_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HBD9177578.1"
                     /translation="MAKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCGQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(2515..3051)
                     /locus_tag="KLC54_001207"
     CDS             complement(2515..3051)
                     /locus_tag="KLC54_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HBD9177579.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHPEFTLDFIDG
                     GTLALQLSYIIARYDRLIVLDCIEAQDASIGDIFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLTKEGFAYE
                     KIADFSLQELADISYKNY"
     gene            complement(3048..3740)
                     /gene="cybH"
                     /locus_tag="KLC54_001208"
     CDS             complement(3048..3740)
                     /gene="cybH"
                     /locus_tag="KLC54_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HBD9177580.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVMLGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKYIKEEKH"
     gene            complement(3751..5466)
                     /locus_tag="KLC54_001209"
     CDS             complement(3751..5466)
                     /locus_tag="KLC54_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HBD9177581.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASDEAFKYTSNPYATGADKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNPNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGIGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDAKGNNLSEYK
                     VNVNL"
     gene            complement(5469..6608)
                     /locus_tag="KLC54_001210"
     CDS             complement(5469..6608)
                     /locus_tag="KLC54_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HBD9177582.1"
                     /translation="MIDYHQIESRLSALEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLESAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPDFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(6728..>8136)
                     /gene="mnmC"
                     /locus_tag="KLC54_001211"
     CDS             complement(6728..>8136)
                     /gene="mnmC"
                     /locus_tag="KLC54_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HBD9177583.1"
                     /translation="LKELDFKADIWYLDGFSPNKNSQMFDENLIFEVARLSKKNTQIC
                     TFSSASFLQKNLKKYGFRVEKTKGFRKREMIKAYLENELEFKDKEAYFSRTFSSLKNK
                     KVAIIGAGISSAVLAYELSLRGFEIDVFEKHLELGKGASGNESGILSSLILKPKVNLG
                     EFSELSFIEASRFYRQILDLEFKGVVEFAHNDLMQERFDTQRENVLFKISKNQAFLEE
                     GGVIFPKNLVKNLFEKSKACIYFNHEFQAYKFENECFTLKFKNDIVKSDYAVLIYAMG
                     ADTKDFVFYDEMKLSKVRGQVTHLKPFLNTPFPLSSKAYICPVKDDLQVIGASYDRLD
                     ASLESKEEDDKQNIENIAEFIDKNTKLEIIGSKVGFRSYSSDRFMIVGNAYDEVFYKE
                     EYKALLWTKNKEQKLAKISCNLYFNFAHGSRGFSTSVLAARYLCALINNEPLYLEKKY
                     IHAIHPARFLIRKLKKGL"
BASE COUNT         2787 a         1491 c         1160 g         2698 t
ORIGIN      
        1 gtaaagatta taaatcttag ataaaattta aaggatacca aaatgattaa tgtgttgatg
       61 atagaagatg atcctgattt tgcgcaatta ttatctgagt atttagcgca atttaatatt
      121 aaaatcacaa attttgaaaa tcctaaaagt gctttaaatg taggcgttca aggctatgat
      181 tgtctaatct tggatttaac tttaccagga attgatggtc ttgaagtttg tagagaaatc
      241 agacaaaaaa gcaatattcc tattattatc tcatcagcta gaggcgactt aagcgataaa
      301 gttgtggggc ttcaaatcgg cgctgatgat tatctaccaa agccttacga tccaaaagaa
      361 atgtatgcaa ggattatgag tcttattcgt cgcacaaaaa gagttgaaca cgctaataat
      421 gaaaatatta attctgcttt caaaatcgat gaaagaagac atgagatcac ctatgaagat
      481 aaggttttaa cacttactcc tgctgaattt gaaattttag aataccttat ccaacaacac
      541 ggatacagcg tttcaagaga acagcttgta agtcgctgta aaaatctaaa agataaagat
      601 tctaaaagcc ttgatgttat catcggtcgc ttaagagtaa aaataggaga tagttcaaaa
      661 tctccaaaac atattttttc tgttagaggt ataggatata aactgatagg atgacaaaaa
      721 attattctat ttataccaaa ctgattattt tatttgttgt tacttttttc ttggtttgtg
      781 tgctttttat cgttctttta aaaatagaag gaaatgccta taatgaagaa gaaagtttaa
      841 aacaagaaaa tcttataaaa aatttactca tctcctatga aaacacttca ggtgttgaaa
      901 taggagctta tcttggaaac agcggtttta acgctataca aaatccccat cttgtaaaag
      961 ctataagaaa taatggacaa tcacttttta aagcaggcgg agagctttgt actctttctt
     1021 ctttaaaata tcatagcaat ctttattttg atgttcaatg taaagatttt gatggcttat
     1081 atgaagaaaa tactagcgat agggtttata atcttttatt gataggattt ttctcttttt
     1141 ctttgctggt tgtttttatg tatttttcgg tattaagatc tttagagcct ttaaaaaaat
     1201 taagaagaca agttgccgaa gttgcaaatg gggaacaacc tgatttttta gactatcaag
     1261 aagatgaagt aggtaagatc gcctttgaat ttcaaaaagc tttcaagaaa aaccaagaat
     1321 taatccaatc aagacaactt ttcctaagaa caatcatgca tgagttaaaa acccctatag
     1381 gaaaagggag aatcatttct gaaatgatca aagaagacag acaaaaagaa agacttatcg
     1441 ctatattttt acgcatggat tctttgatca atgaatttgc caaaatcgaa aatttatttt
     1501 caaaaaacta caacttacac tttaaaccta gtcgttttag cgctatactt gaagaagcta
     1561 aagaacacct tatgagagat gattttaaca aagtggtaaa agttgatata agatatgatg
     1621 ctttaatcaa tgttgatatg gaaattttct ctgtaatttt aaaaaatctt atcgataatg
     1681 ccttaaaata ctcaaacaat ggcacttgtg agcttttttg ttgtaaagaa tgttttacca
     1741 ttaaaaatcc aggcaaacct ttagcagagc ctatagagca ttatcttgaa gcttttacaa
     1801 gagaaaaaca taatcaggtc aaaggtatgg ggctaggact ttatatagtt tcagaggtat
     1861 gtaaactgca taattttgat ttgatttatt tttatgatga tggaaagcat tgctttaaaa
     1921 ttttctttgg agataaagaa aaataatggc aaaaggccta gaaaaattca atgaacttgt
     1981 tgaaagtttt gcaaatttac ctaccatagg aaaaaaaacc gctataaggc ttgcttatca
     2041 tctttgcata aataatcaaa tcgatggcat gaaactcgca cacaatatag aaaatgctat
     2101 ccgctttata aaaccttgtg ggcaatgcgg tgctttaagc gaaaatgagc tttgcgaaat
     2161 ttgtagcgat gaagaaagaa ataaaaacat tttatgtata gttgaaagcc caaaagatat
     2221 actaacactc gaagagagtc aaagttacaa tgggctatat tttgttttag atgagttaaa
     2281 tgaagaaaaa cttgaaaaac taaagcaaat catacttaag ctaaatatct ctgagctcat
     2341 ttttgcattg acacatagca ttaattctga tgcaactatc ttttttatag aagataaatt
     2401 taaaggctta aacctaactt ttagtaaaat cgctcaagga attccaagtg gtgtgaattt
     2461 agaaaatgtg gatttaatct ctttaaataa agctatgaat tttagaacaa aaatttagta
     2521 atttttataa gaaatatcgg ctaattcttg caaagaaaaa tccgcaatct tttcataagc
     2581 aaaaccttcc ttggttaaaa aatcaagtaa agttttttcc atgattttag ctccttgtat
     2641 aagctcatct gaaagcttaa aactcatcgc ttcaatacgc tttggcacac aagctaagat
     2701 gtgtgtttta ggcaaatctc ctgcaagttc catgtattgt aaggtttgaa gcatttctat
     2761 ttcatgagca cttccactcc agctgatttt attaggcata gcatcataag gaaagaaaaa
     2821 tatatctcct atactcgcat cttgcgcttc tatgcagtct aaaacgataa gtctatcgta
     2881 cctagcgatg atatagctaa gttgcaaagc taaagttcca ccatcaataa aatctaaagt
     2941 aaattcagga tgagtaaatt tgtagttttt ttcaagttgt ttgcaaagat gaacgcctaa
     3001 gccttcatct gcaaacatga tattgcctat tccaaggact aagaatttca atgcttttct
     3061 tcttttatat atttatatcc gctaataata gcatccatag caccatcttt accttttact
     3121 gcgttaaaaa tcgccatata aatatgtact ggtacaaaaa tcataatcac ccacatcaaa
     3181 attctatgat aagttcttac atcagccaag ccacccattg cagcttcaag cggtcttaaa
     3241 atatgatata aaagcccacc taagccctca tgataagtat gagtataaag aataagccct
     3301 gtaagaatga tacctaacat cacaagataa aagaaaaaat aagttacaaa ttgcaaagga
     3361 ttataaaccc cttttaaatg cggatgtttt cctaagaaaa tgtaaaattt tacttgttct
     3421 atccataatt tgatattaaa aatatcccat acacttctgc gttcttttgc gcttacctta
     3481 tcgcagaaaa acaaatatac tttaaaaata atacaagcga ttaaaacaaa acccaccgct
     3541 tgatgcacta agcggtattt tgcttgcata aaatttacgg gttcgccgtt gctaatagga
     3601 ctttgaaaca cataagaaag ataatatcct gtgccaataa gaatcactat agcaatagct
     3661 cttacccagt gcgttaaacg caaacctatg ctaaattcat attcagcttt tctttgcaat
     3721 ttttcttctt tgttttgcat gaaagcctcc ttatagattg acattcactt tatattcgct
     3781 tagattattg cccttagcat ccattacatg caccgcacaa gcaatacaag gatcataaga
     3841 gtgaattttt ctaatgattt caagtggttg ttttacatca gcgattttaa gtcctatcaa
     3901 acattgctca taacttccac ctatgccatt tgcgtctttt ggacttgcat tccaagtaga
     3961 aggcactaca gcttgccagt tttcaatgac gccattttta attctacacc aatggcttaa
     4021 tgttccgcgt ggcacatgcc ccatatagcg tcctttatat tctttagaat tatcaatcac
     4081 ataaggagca caagtactct gatctacttt taaattttca actaaattat taaacgcttt
     4141 taaagcatta tttgcaacga tttttgcttc aatacaacgc gcagctgttc ttccaagtgt
     4201 gctaaataca gcatttaaag gaagtcctgt ttcttttaag aactcatcta ctacaggaac
     4261 aacatttgga ttacccttag cataatttac aacgatattt gctaaaggtc ctacttgcat
     4321 agggtttcct tcatagcgtg gagctttaat ccaactatat ttacccttag tatcaaacac
     4381 tttagaatgg acattatttc catgatgatc tacgctttct ccatctacaa gtcctgtata
     4441 atttggattt gttttgccat cataaggatg taaaggttca ttgtctgcat accaagaatg
     4501 agttgcctct tcggtaatct tatcttcttc tacttcataa accttgctta aatctccatt
     4561 tttgataata ccactttcaa aaagccattc atctcttccg atttgaaatt ctttaaaggt
     4621 gtaaagatta tttaccccta tatcatttaa aacacttgct tcatgtgcat aagcttttcc
     4681 tgccatcaca agatcaggat aatacgcacg attaacaaag tcttgcactt cttggaattt
     4741 aaccatatat tcacccattc ttgcaggatc aagtaaatcc ataacgcaag ttacaccacc
     4801 aacagttaag ctttgtggat gtgggttttt agctccaaaa atcgccatac attgagcaat
     4861 gattctttga attcttaaac attctagata gtgagaaaga acaattaaat tttgctcagg
     4921 agttaaacga taagttggat gaccatagta cgcattagca aaaggtccta aatttccttt
     4981 atctacaaaa gttttaagtc tttgttgcac ttcaagaagt ttatctgcac ctgttgcata
     5041 aggatttgaa gtgtatttaa aagcttcatc gcttgctttt ttaacatcag cacttaaagc
     5101 acttaccaca tcagcccaat caagcccatg aagttgataa aaatgcacaa tatgatcgtg
     5161 taaaaataaa gctgcattca ttaaagttct tgttaaaagc gcatttaaag gcggagtaat
     5221 acctaaagca ttttcaacag caactatacc tgctttataa tgtgaaaaag tacaaactcc
     5281 acaaattctt tgtgtcataa aacccgcatc tcttggatca cgccctttta ctatggtttc
     5341 aataccacgc cacaaagtag agcccgcata agcttctttt accacattat tatcatcaac
     5401 aacaacttca actcttaaat gcccttcaat tcttgtaata ggatctacga ttattttttg
     5461 actcattttt attccttatc tttttgcatg gaagatatca ctgcgtgtgc tgctatagca
     5521 acgcctgtaa gtgtaagcac acctatgccg attttatctg aaacactatc cgcacccaag
     5581 ccaaaaacag tatcaaattt acgactagcc ataggctctt caaaaggccc catagtatcc
     5641 caaaaatcag gctcagaaca acctatacaa ccatgtcctg cttgaatagg ccaagaagtg
     5701 tgctggttaa atctctctct tgagcagtta ttaaaagtat aaggcccttt acaacctact
     5761 ttataaagac aaaaaccttg ttttgctcct tcatctccaa aagcatgtac aaactcaccc
     5821 gcatcaaaat gtccgcgtct ttcacaaaga tcatgaattc ttagaccata agcccatttt
     5881 ggtctattat acacatcaag tgctggtaac tcaccaaata ataaataatg aagcacatta
     5941 cccactatat ttttttcact tggaggacag cctggaacat tgatcacagt tttgcttgtt
     6001 actttgctta aaggctgtgc gttactagga tttggtcttg cggcttggat tcctccaaag
     6061 ctagaacagg ttcctatagc aaaaattgcc aaagcatttt cacttgccat ttttgagagc
     6121 tcatagcctg tttttccatg tgcacctatg gttaaaaaat gctctgtatc acccataggg
     6181 ataccacctt caaccattaa aatgtattta tttttatgct tttgaatggc actttctaaa
     6241 ttttcttcag cttgccaacc tgctgcagcc atcactgttt cgtgatattc taaagaaata
     6301 taatcaaaaa tcaaactatc aatcgttgga gtatcacttc ttaacaaact ctcgctacag
     6361 cctgtacact cagccatatg aagccacaca acaggaagcc tatcagcaag ctcagcagct
     6421 tttgccacca taggagtaaa actcgctggc aaagccaaaa atgcagtcat agcacctgcc
     6481 catttcataa aatcccttct agaaaaacct gacttttcta atgcttttgt aatactatca
     6541 ttgtctttca aagaaggaag cttttcaaga gccgataaac gcgactctat ttgatgataa
     6601 tcaatcatta tatttccttt ataacatgaa atttattctc tataataata aaataaagga
     6661 agttaaaata aagttaaaaa cttactctca taagcaaata ttagtattac tcttaattaa
     6721 agcttaatca taagcctttt ttgagttttc gaatcaaaaa tcttgcaggg tgaatagcgt
     6781 ggatgtattt tttttctaaa tacaagggtt cattatttat caatgcacac aaataccttg
     6841 ccgctaaaac acttgtgcta aaaccccttg atccatgagc aaaattaaaa tacaaattac
     6901 aagatatttt agctagcttt tgctccttgt tttttgtcca taataaagct ttatattctt
     6961 ctttataaaa cacttcatca taggcatttc caactatcat aaagcgatca ctcgaataag
     7021 atctaaagcc taccttagaa cctatgattt ctaattttgt atttttatct ataaattcgg
     7081 ctatattttc tatattttgt ttatcatctt cttcttttga ttctaaactt gcatcaagcc
     7141 tatcataact tgctccaatc acttgcaaat catcttttac agggcaaata taagccttag
     7201 aagataaagg aaatggagta tttaaaaaag gttttagatg tgtaacttga cctcttactt
     7261 tgcttaattt catctcatca taaaaaacaa aatcttttgt atctgcaccc atagcataaa
     7321 tcaaaaccgc ataatcactt ttaacaatat catttttaaa ttttaaagta aaacactcat
     7381 tttcaaattt ataagcttga aattcatgat taaaatatat acaagcttta cttttttcaa
     7441 aaagattttt aaccaaattt tttggaaaaa tcactccacc ctcttctaaa aaagcttgat
     7501 tttttgaaat tttaaacaaa acattttctc tttgtgtgtc aaatctttct tgcatcaaat
     7561 cattatgtgc aaactccacc acacccttaa attctaaatc taaaatttgt ctataaaaac
     7621 ggcttgcttc tataaaagaa agctctgaaa actcccctaa atttacctta ggttttaaga
     7681 ttaaagagct taaaattcca ctttcatttc cacttgcacc cttgcctaat tctaaatgtt
     7741 tttcaaaaac atctatctca aaacctctta aactaagctc ataagctaaa acagcgcttg
     7801 atatacctgc accaataata gctacttttt tattttttaa agatgaaaat gttcttgaaa
     7861 aatacgcttc tttgtcttta aactcaagct cattttccaa ataagcttta atcatttctc
     7921 tttttctaaa acctttggtt ttttctactc taaagccata tttttttaaa tttttttgta
     7981 aaaaacttgc cgaagaaaag gtacaaattt gtgtattttt tttagaaagt cttgccactt
     8041 caaaaattaa attttcatca aacatttgcg aatttttatt tggagaaaat ccatctaaat
     8101 accaaatatc agctttaaaa tccaattctt ttaaaa
//
LOCUS       DAEDTT010000070         8118 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.070, whole genome shotgun sequence.
ACCESSION   DAEDTT010000070 DAEDTT010000000
VERSION     DAEDTT010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8118
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.070"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            14..1306
                     /locus_tag="KLC54_001212"
     CDS             14..1306
                     /locus_tag="KLC54_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006656696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HBD9177584.1"
                     /translation="MKVKNYIILGAGIAGISVAYHLKQKNISSIIYEKNHYFGGLCSS
                     FKINDFIFDNAVHLSFTKDEYVKKLFSNSCRVISHKPPKISNYYKGYWLKHPAQNNLE
                     PLELKEKIDIISDFCENPYKNIEINNYEDWLKAQYGKYFSQNFTMRYTRKYWNIEAKD
                     LSTSWVGSRMYKPNISEVLKGAFEKETPNTYYADEMRVPQYGGYQSFLNLMAKECNIQ
                     YDKEIIEINPANKMIYFKDGSFKNYDVLVSTLPLPEYAKLIKNIPNEISLACQKLKYT
                     SVVLVSLGFSKPDIAKHIWFYIYDEDILPARCYSPNKKSPYNVPKNCSSLQFEIYFSQ
                     DKPLNFDENEIIKKVVNQGKKMGIFCEEDIILKDYRILPYGNVIFYHNMEKDREKIRN
                     FLESCNIHTAGRFGKWEYLWSDQSLLSGKEVAEKLYEL"
     gene            complement(1255..2175)
                     /locus_tag="KLC54_001213"
     CDS             complement(1255..2175)
                     /locus_tag="KLC54_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006655997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HBD9177585.1"
                     /translation="MTILLTGATGFIGTNFILQLYKKYNIIALVRKSSNISRIEKFCK
                     IYYYEDINSLRNILLQEKIHGVIHLATLYLKNHKSHQINNLVNANITFGAEILEVLYM
                     MDYKGWFINTGTFWQFYKNIPNNPLNLYAATKTAFLRIVDYYVQVSEIKFTTILLNDT
                     YGANDWRQKIFNLWLNSLKTQDAISMSFGEQAIDMLYVDDVINAFEVCISLFNSENSV
                     LLENRLFTLHSKERKTLRELAVIFENCIGRKLNIIWGAVPYSSRENFIPYEKDCKLPN
                     WEQKISFEEGFKKIYNSYNFSATSFPDRRL"
     gene            complement(2175..3440)
                     /locus_tag="KLC54_001214"
     CDS             complement(2175..3440)
                     /locus_tag="KLC54_001214"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HBD9177586.1"
                     /translation="MKSLKIAVFGLGFVGLTTAVGFARKGFEVIGYEIDRNKASLLNN
                     GEIPFHEEGLSEALNSVLEKQLKITNNVQEALKEARIIFYCIGTPMSEDGSADLSFVL
                     GALKTTVENLTLCQKEPILVIKSTVPPSSCQDIFIPHLESLGVVVGRECHIVNNPEFL
                     REGFAYSDFMDPDRVVIGTQNGQIFKELEDLYKPFNAPVFFTSLNTGEFIKYLSNTTL
                     SLNISYANEMSMVAQSIGDIDIINAFKILHNDKRFSGNPAGITSYLYPGMGFGGYCLP
                     KDTLALYKKSKDKGYEAKILNDILKVNDEILDFYANKIDKEVSKEENIAILGLSFKPG
                     SDDIRDTKSATLISKLVKLGFKNIYAYDPTSNGIFAKTYDYKIHYEANLNDIINKCNV
                     LIIATAWQEFRHLINKQNKIIYNLRWMGY"
     gene            complement(3437..4555)
                     /locus_tag="KLC54_001215"
     CDS             complement(3437..4555)
                     /locus_tag="KLC54_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002837096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HBD9177587.1"
                     /translation="MKNNNYFTNPIVNEDLEYIFNSLTQEQKNKFENSTILFTGCAGF
                     LGFYFIHFFTKYANELNINKIIALDNFMLRKPKWLENLTHEYQDTLELHKFDIISDKI
                     DFLENACKADLIIHAASIASPMFYRTYPIETLDANIWGLRSLLDFYKDKNIKGFLFFS
                     SSEIYGDPDISQIPTDEEYRGNVACIGPRACYDESKRFGETMCSLFAQKFNIPITIVR
                     PFNNYGPGMSIEDKRVPADFAKAVMEGENIEILSDGSPKRTFCYIADAISGYLKALVY
                     GKFDYFNIGIDQPEISIKDLSYIYAKHSKAIFNFEPQISFAISKDKNYLKDNPNRRCP
                     IIDKARNKLNYNPDILVDEGVGRFLKFLKFEKENGELL"
     gene            complement(4570..5895)
                     /gene="rfbH"
                     /locus_tag="KLC54_001216"
     CDS             complement(4570..5895)
                     /gene="rfbH"
                     /locus_tag="KLC54_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein RfbH"
                     /protein_id="HBD9177588.1"
                     /translation="MKDHNLRQEILSKVKEYYSLHHKVISNDFIGGKSRINYAGRVFD
                     ETELTYLVDSSLDFWLTYGKYSEKFEKDLAKFLGIKWAFLVNSGSSANLLAFFALTSP
                     LLKERQIQRGDEIITVAAGFPTTIAPLVQYGAIPVFVDMELKYANINTTQLELALSSK
                     TKAVMIAHSLGNPFDIKTVKEFCDKHNLWLIEDNCDALGAKYDGKMTGTWGDIGTSSF
                     YPAHHITMGEGGAVYTNNPLLKKIILSMRDWGRDCWCKGGKDNTCGCRFTQEFGTLPR
                     GYDHKYVYSHFGFNLKITDMQAAIGCAQLDKIFSFIEKRKHNYQRLYEGLKEIKQLEL
                     VEKQPNSEPSWFGFMMTVKEDNKFTRNEITDFLEQHNIQTRTLFAGNIIRHPAFDALK
                     INKDYRVVSDLRITDKIMNNSFWVGVYPGMTDDMIDYIILKIREFIKVK"
     gene            complement(5919..6713)
                     /gene="rfbF"
                     /locus_tag="KLC54_001217"
     CDS             complement(5919..6713)
                     /gene="rfbF"
                     /locus_tag="KLC54_001217"
                     /EC_number="2.7.7.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate cytidylyltransferase"
                     /protein_id="HBD9177589.1"
                     /translation="MKVLILAGGLGTRLSEETSLKPKPMVEIGGKPILWHIMKIYSHY
                     GFNDFIILTGYKGHVIKDYFINYYTQYSDITVDMSDNSVQIHNTRHEPWKVTMLYTGQ
                     DSMTGGRILYAKPYVGNETFMLTYGDGVSDVNIKELVNFHKGHGKAITMTSVLPEGKF
                     GALDIDNTTNRIKSFTEKPKGDASLSNAGWINGGFFVCESKVFDYIKEGDETIFEQTP
                     LRNLAQDGELYSYKHHGFWKCMDTLKDKNDLTKMWINNKAPWALWN"
     gene            complement(6710..8008)
                     /locus_tag="KLC54_001218"
     CDS             complement(6710..8008)
                     /locus_tag="KLC54_001218"
                     /inference="COORDINATES: protein motif:HMM:NF013652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177590.1"
                     /translation="MFNIVINSSEQYINYVSVLINNIVLKTEREKKFVDLCDPYLLNT
                     ESHQNHDYLVVNSCLEYQSQEEGYVFHILGDDFKQEIKDKFYKLAERLSSYYPCKVCF
                     YYVDDECFKKEHLVKWAGSYATYYKLYMGLILPDNIEYCLYIDTDMHILFDIREIFAI
                     DLKDKVLAAVDTAVKANPIRSLKTEYPDFIFKANWFNSGFMFINLYKWRKENIEKLSF
                     EFMESYPIPHAPDELILNAIVYDRIKLPLRYNFILGHYMADTVDLHASYGFENYQGGF
                     LYSLEHYKNNLQNAKILHYAWHCIKPWNSSYCRLDLNYAPIKFPCIQMWWDVALNTPY
                     FEDYFKELKLKIEKSDLETYARSISWKLKELENQINELKNNNDKNQRQCFNNHPKELT
                     LSFQLGQALIKAHKNWYKGGYIKFIFEALKIKQEFQKGKI"
BASE COUNT         2920 a         1365 c          928 g         2905 t
ORIGIN      
        1 caaataacaa gggataaaag tgaaaaatta tattattcta ggtgcaggta tagcaggaat
       61 ttcagtagca tatcatctaa aacaaaaaaa tatatctagt attatctatg aaaaaaatca
      121 ttattttgga ggactttgta gtagttttaa aattaatgat tttatttttg ataatgcagt
      181 tcatctatct tttaccaaag atgagtatgt aaaaaaactt ttttccaatt cttgcagagt
      241 catttcacac aaacctccta aaatttcaaa ttattataaa ggctattggc taaaacatcc
      301 tgcgcaaaat aatcttgagc ctctagaact taaagaaaaa attgatatta tttctgattt
      361 ttgcgaaaac ccttataaaa atatagaaat taacaattac gaagattggc ttaaagcgca
      421 atatggaaaa tactttagtc aaaattttac tatgcgttat actagaaaat actggaatat
      481 tgaagctaaa gatctaagta catcttgggt tggttcaaga atgtataaac caaatattag
      541 tgaagtttta aaaggagctt ttgaaaaaga aacaccaaat acttactatg cagatgaaat
      601 gagagttccg caatatggtg gatatcaatc ttttttgaat ttaatggcca aagaatgcaa
      661 tatacaatat gataaagaga ttatagaaat taatccagca aataaaatga tttattttaa
      721 agatggaagt tttaaaaatt atgatgtttt agtttcaact ttacccctac cagaatatgc
      781 taaacttatc aaaaatatcc caaatgaaat atctctagct tgtcaaaaat taaaatatac
      841 tagtgtagta cttgtgtctc ttggattttc aaaacctgat attgcaaaac atatttggtt
      901 ttacatctac gatgaagata tacttcctgc tagatgctat agcccaaata aaaaatcacc
      961 ttataatgta cctaaaaatt gtagttcgct acaatttgaa atttatttct cacaagataa
     1021 acctttaaat tttgatgaaa atgaaatcat taagaaagta gttaatcaag gtaaaaaaat
     1081 gggtatcttt tgcgaagaag atattatttt aaaagattat aggatcctac cttatggcaa
     1141 tgttatcttt tatcacaata tggaaaaaga tagagaaaaa ataagaaatt ttcttgaatc
     1201 ttgtaacatc cacacagcag gaagatttgg aaaatgggaa tatttatgga gcgatcaaag
     1261 tcttctgtct ggaaaagaag ttgcagaaaa attatacgaa ttataaattt ttttaaatcc
     1321 ctcctcgaaa ctaatttttt gttcccaatt aggaagcttg caatctttct cataaggaat
     1381 aaaattttcc ctggaagagt atgggacagc cccccaaatg atattaagtt tcctccctat
     1441 acaattttca aaaattacag caagttctct taaagttttc ctctcttttg aatgcaaagt
     1501 aaataatcta ttttctaata aaactgaatt ctcagaatta aacaatgaaa tacaaacttc
     1561 aaaagcattt ataacatcat ctacataaag catatctata gcttgctctc caaaactcat
     1621 actgattgca tcttgagttt ttaaagaatt taaccataaa ttaaaaattt tttgacgcca
     1681 atcattagct ccataagtat catttaataa gatagtggta aatttaattt cgctaacttg
     1741 cacataataa tcaactattc ttaaaaaagc agtttttgta gcagcataca aatttaaagg
     1801 attatttgga atatttttat aaaactgcca aaaagttcct gtgttgataa accatccttt
     1861 ataatccatc atatataaaa cttccaaaat ttcagcacca aaagtaatgt tggcatttac
     1921 cagattgtta atttgatgcg acttatgatt ttttaaataa agagttgcca aatgaataac
     1981 accatgaatt ttttcttgta aaagaatatt ccttaaagaa tttatatctt cataatagta
     2041 aattttacaa aatttttcta ttctacttat attactagat tttcttacta aagcaataat
     2101 attatatttt ttatagagtt gtaaaataaa attcgtccct ataaatcctg tagctcccgt
     2161 aagtaaaatt gtcatcaata tcccatccat cttaaattat aaataatttt attttgttta
     2221 ttaattaaat gtcgaaattc ttgccaagca gttgctataa tcaaaacatt acacttattt
     2281 attatatcat ttaaatttgc ttcataatga attttataat cataagtttt agcaaaaatt
     2341 ccattagatg tcggatcgta agcataaata tttttaaatc ctagttttac aagtttagaa
     2401 attaaagtag cggatttagt atctcttata tcatcacttc ctggcttaaa acttaaacct
     2461 agaatcgcaa tattttcttc ctttgaaacc tccttgtcaa ttttattagc ataaaaatca
     2521 agaatttcat catttacttt taaaatatca ttcaaaattt ttgcttcata tcctttatct
     2581 ttgctttttt tatacaaggc gagagtatcc ttaggtaaac aatatccacc aaaacccatt
     2641 ccaggataca aataactagt tataccagca ggatttccac taaatctttt atcattatgt
     2701 aaaattttaa aagcattgat aatatctata tctcctatac tttgagcaac catactcatt
     2761 tcattagcat aacttatatt tagacttaaa gtcgtattac taagatattt aataaattca
     2821 cctgtattta gggaagtgaa aaaaactggt gcattaaaag gtttatacaa atcttcaagc
     2881 tccttaaaaa tctgtccatt ttgagtacct ataacaactc tatccggatc cataaagtca
     2941 ctataagcaa atccttctct taaaaattca ggattattta ctatgtgaca ttctcgccca
     3001 actacaactc ccaaagactc caaatgcggt ataaaaatat cttgacaact agaaggcgga
     3061 acagtagatt taatcactaa aattggttct ttttgacata aagttagatt ttcgactgtg
     3121 gttttaagcg cacctagcac aaaactcaaa tcagcacttc catcttcact catgggtgtg
     3181 ccaatacaat agaatataat tcttgcctct tttaaagctt cttgcacatt gttagtaatt
     3241 tttaattgtt tctctaaaac actatttaat gcttctgata atccttcttc atgaaatgga
     3301 atttctccgt tattaagcaa tgaagcttta tttctatcta tttcatatcc aataacttca
     3361 aatccttttc ttgcaaatcc aactgccgtt gtgagaccaa caaagcctaa tccaaaaact
     3421 gctattttta atgacttcat aaaagttctc cattttcttt ttcaaatttt aaaaatttta
     3481 aaaatctacc aacaccttca tctactaaaa tatcaggatt gtaattcaat ttatttctag
     3541 ctttatcaat aataggacat ctgcgatttg gattatcttt taaataattc ttatctttcg
     3601 aaatagcaaa actaatttgc ggttcaaaat taaaaattgc ttttgaatgt ttagcatata
     3661 tatatgataa atcttttata gaaatttcag gctgatcaat acctatatta aaataatcaa
     3721 attttccata aactaatgct ttcaaatacc ctgaaatagc atcagcaata taacaaaaag
     3781 ttctttttgg agatccatcg ctaagaatct ctatattttc gccctccata actgctttag
     3841 caaaatcagc aggaactctt ttatcttcta tactcatacc tggaccataa ttattaaaag
     3901 gtcttactat agtaattggg atattaaact tttgcgcaaa taaagaacac attgtctctc
     3961 caaaacgctt tgactcatca taacatgctc taggacctat acaagctaca ttacctctat
     4021 attcttcatc tgttggaatt tgactaatat caggatcacc ataaatttca gaacttgaaa
     4081 aaaataaaaa acctttgata tttttatcct tataaaaatc aagcaaagat ctcaaccccc
     4141 aaatatttgc atctaaagtc tctataggat aagtccgata aaacatagga cttgctatac
     4201 ttgctgcatg aattatcaaa tcagctttgc aagcattttc caaaaaatca attttatcac
     4261 taatgatatc aaatttatga agctctaagg tatcttgata ttcatgagtt aaattttcca
     4321 accatttggg ctttcttaac ataaaattat ccaaagctat aatcttgttt atattaagtt
     4381 cgttagcata ttttgtaaaa aaatgaatga aataaaaacc taaaaaacca gcacatccgg
     4441 taaataaaat tgtagaattt tcaaatttat tcttttgctc ctgagttaaa gaattgaaaa
     4501 tatattctaa atcttcatta acaataggat ttgtaaaata attattattt ttcatgcaac
     4561 caaccttttt tatttaactt taataaattc tctaattttt aatattatat aatcaatcat
     4621 gtcatcagtc attccaggat atacaccaac ccaaaagcta ttgttcatta ttttatccgt
     4681 aattcttaaa tcactcacta ctctataatc tttatttatt tttaaagcat caaaggccgg
     4741 atgtcttata atattaccag caaacaaagt tctcgtttga atattgtgct gctctaaaaa
     4801 atcagtaatc tcattacgag taaacttatt atcttctttt acagtcatca tgaaaccaaa
     4861 ccagctaggt tcagaatttg gttgtttttc aaccaattcc aattgcttaa tctcttttaa
     4921 accttcataa agcctttgat aattatgctt tcttttttct ataaaactaa aaattttatc
     4981 taattgtgcg caccctatag cagcttgcat atctgtaatt tttaaattaa atccaaaatg
     5041 agaataaaca tacttgtgat catagcccct aggtaaagtt ccaaactctt gagtaaatcg
     5101 acaaccacaa gtattatctt ttccaccttt acaccaacaa tctctccccc aatctcgcat
     5161 tgataaaata atttttttaa gtaaagggtt gtttgtatat actgctccac cttctcccat
     5221 tgtgatatga tgcgcaggat aaaaggaact tgtacctata tcaccccatg ttccagtcat
     5281 ttttccatcg tattttgctc ccaaagcatc acaattatct tctattaacc aaagattatg
     5341 tttatcacaa aactctttca cagtttttat atcaaaagga tttcctaaac tatgggctat
     5401 catcacagct ttagttttag agcttaaagc taactcaagt tgagttgtat ttatattagc
     5461 gtatttcaat tccatatcta caaatacagg aatagcacca tattgaacta aaggtgctat
     5521 agttgtagga aaacctgctg caacagtgat aatttcatca cctctttgaa tttgtctttc
     5581 tttaagcaat ggcgaagtta atgcaaaaaa agccaataaa ttagcagacg atccagaatt
     5641 aaccaaaaaa gcccacttga tacctaaaaa tttagccaag tctttttcaa atttttcaga
     5701 atattttcca taagtaagcc aaaagtccaa agaactatct actaaatatg ttaattctgt
     5761 ttcatcaaaa acacgaccag cgtaattaat tctagatttt ccacctataa aatcattgga
     5821 aattacttta tgatgtaaac tgtaatattc tttaacttta cttaaaattt cttgtcttaa
     5881 attatgatct ttcatactgt ttattttcct tcctgttgtt aattccataa agcccaagga
     5941 gctttattat ttatccacat tttggttaaa tcatttttat cttttaaagt atccatacat
     6001 ttccaaaaac catgatgttt gtaactataa agttcaccat cttgagctaa atttctcagt
     6061 ggagtttgtt cgaaaatagt ttcgtcaccc tcttttatat agtcaaatac cttagattca
     6121 catacaaaaa aaccaccgtt gatccaacct gcattactca aactagcatc acctttaggt
     6181 ttttccgtga aactttttat gcgatttgtc gtattatcaa tatctaaagc accaaatttt
     6241 ccttcaggta aaacagaagt cattgtaata gccttgccat ggcctttatg aaaatttact
     6301 aattctttga tattcacatc acttactcca tcaccataag taagcataaa agtttcattg
     6361 cccacataag gttttgcata caaaattcta cctcctgtca tagaatcttg tccagtataa
     6421 agcatagtta ctttccatgg ctcatgtctg gtattatgaa tttgaacaga attatctgac
     6481 atatctactg ttatatcgct atactgtgta taatagttta taaaataatc ttttataaca
     6541 tgacctttat atcctgttaa aataatgaaa tcattaaaac cataatgact ataaattttc
     6601 attatatgcc aaagaatagg ttttccacct atctctacca taggttttgg ctttagactt
     6661 gtttcttctg ataaccttgt tccaagacca cctgctaaaa ttaaaacttt catatttttc
     6721 ctttttgaaa ttcttgtttt atttttaaag cttcaaatat aaatttaata taaccacctt
     6781 tataccaatt cttatgagct tttatcaatg cctgtcccaa ttgaaaagat agagttaatt
     6841 ctttgggatg gttattgaaa cattgtcttt ggtttttatc gttgttattt tttaattcat
     6901 tgatttgatt ttccaattct tttaatttcc aagaaataga acgagcatag gtttctaaat
     6961 ctgacttttc aatttttaat ttaagttctt taaaataatc ttcaaaataa ggagtattta
     7021 aagctacatc ccaccacatt tgtatacatg gaaattttat tggtgcataa tttaaatcta
     7081 atctacaata agaagaattc caaggtttta tacagtgcca agcataatgc aatattttag
     7141 cattttgtaa attattttta taatgttcaa gtgaatataa aaaacctcct tgataatttt
     7201 caaaaccata tgaagcatgc aaatcaacag tatctgccat ataatgaccc aatataaaat
     7261 tatacctaag aggtaattta attctatcat acacaatagc atttaaaatt aactcatctg
     7321 gagcgtgtgg tataggataa ctttccataa attcaaaact taatttttca atattttctt
     7381 tacgccactt atatagatta ataaacataa aaccagaatt aaaccaattt gccttaaaaa
     7441 taaaatctgg atattcagtc tttaaagatc ttataggatt agctttgaca gctgtatcaa
     7501 cagcagctaa aactttatct ttcaaatcaa tagcaaatat ttcccttata tcaaataaaa
     7561 tatgcatatc agtatctata tataaacaat attcaatatt gtctggaagt atcaacccca
     7621 tataaagctt gtaatatgtc gcatatgaac cagcccattt aactaaatgt tcttttttaa
     7681 aacactcatc atctacataa taaaaacata ccttacaggg ataatagctt gatagtctct
     7741 cggcaagctt ataaaattta tctttaattt cttgtttaaa atcatctccg agaatatgaa
     7801 aaacataccc ttcttcttga ctttgatact caagacatga gtttacaaca agataatcat
     7861 gattttgatg cgattcagta ttcaacaaat aaggatcgca taaatctaca aacttttttt
     7921 ctctttctgt ttttaataca atattgttta ttaaaacaga aacataatta atatattgct
     7981 cacttgaatt aatcacaatg ttaaacatgt tttttccatt ccttataaat tttattaatt
     8041 ttaaatataa acaaaaaagg attttttaaa aaagcagatc ctaatcgata agataaatga
     8101 tttttaacta aaaaagtt
//
LOCUS       DAEDTT010000071         8113 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.071, whole genome shotgun sequence.
ACCESSION   DAEDTT010000071 DAEDTT010000000
VERSION     DAEDTT010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8113)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8113)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8113
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.071"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..361)
                     /locus_tag="KLC54_001219"
     CDS             complement(<1..361)
                     /locus_tag="KLC54_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HBD9177591.1"
                     /translation="MIFLIFSFIVLLIFGLANVYIYKRLIKKITLFKYFYKIFAFIFI
                     VLFLAQAVFLIFRRDEYLSDTWYEILAMLYAPTYCLFFMTLAWDFIKLILALMGKRDK
                     KYNLILRLIFEFSLIVLS"
     gene            447..1742
                     /locus_tag="KLC54_001220"
     CDS             447..1742
                     /locus_tag="KLC54_001220"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HBD9177592.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFGISWQHYYIQSENLKFHRQMALKLISEKKAFACFCTEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLIMLGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAQLAKFYT
                     QEASTIKELKEKMRAIFNTKDFGEFETECKILKELLKDIELFENYEDFKNELLSKSDL
                     KGKKFFMPLRIILTGNIHGPELGDLYPYIKNFIHELARI"
     gene            1745..2026
                     /locus_tag="KLC54_001221"
     CDS             1745..2026
                     /locus_tag="KLC54_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HBD9177593.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIIAALLSWVNPDPYNPIVQ
                     ILYKLSYPAYTLVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            2023..3648
                     /locus_tag="KLC54_001222"
     CDS             2023..3648
                     /locus_tag="KLC54_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HBD9177594.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLAQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRHSMLEINPENVSE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRHLLNDSIKISDIFENLIQNKANDLNKS"
     gene            complement(3545..4030)
                     /locus_tag="KLC54_001223"
     CDS             complement(3545..4030)
                     /locus_tag="KLC54_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177595.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDINLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKVSLPNVKEETKLVTKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            4126..4617
                     /gene="mobB"
                     /locus_tag="KLC54_001224"
     CDS             4126..4617
                     /gene="mobB"
                     /locus_tag="KLC54_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HBD9177596.1"
                     /translation="MKQLIMAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLAPNFDICLVEGLKT
                     LDLPRISVFCKEIDESYFTFSNAIASYEKISHPYLTWLDLNDIQAICRYILKNAKNLQ
                     GEL"
     gene            4619..5461
                     /locus_tag="KLC54_001225"
     CDS             4619..5461
                     /locus_tag="KLC54_001225"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HBD9177597.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DGIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLKMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNHSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            5454..5651
                     /locus_tag="KLC54_001226"
     CDS             5454..5651
                     /locus_tag="KLC54_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177598.1"
                     /translation="MSDIRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            5661..7547
                     /gene="metG"
                     /locus_tag="KLC54_001227"
     CDS             5661..7547
                     /gene="metG"
                     /locus_tag="KLC54_001227"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HBD9177599.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKNTTILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQSGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYISSLDFQSKGENAKFWPAHVHLIGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDAYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNILKEGVLKYYNTELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSCEKVALALNFEISSTNYAKMILDNELLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKHYKASDLIGKQVCIISNLKKAKIFGHESDGMILSAKSGDKLVLITPEQLVQNG
                     SLVG"
     gene            7551..>8113
                     /locus_tag="KLC54_001228"
     CDS             7551..>8113
                     /locus_tag="KLC54_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177600.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFFNNDK
                     KEITQAVKKGAYAIITENDITIEDKDIFYFRVENLEQALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCAYSHSLKDANF
                     TLLSRSSFFFTTLICENLYFKNLNLPF"
BASE COUNT         3092 a         1187 c         1202 g         2632 t
ORIGIN      
        1 cacttaaaac tataagagaa aactcaaaaa tcaaacgcaa aataagatta tattttttat
       61 ctcttttacc cataagagct aaaatcaatt taataaaatc ccaagctaaa gtcataaaaa
      121 acaaacaata agtcggcgca taaagcatgg ctaaaatttc ataccaagta tcacttaaat
      181 attcatctct acgaaatatt aaaaacacag cttgggctaa aaaaagcaca ataaaaataa
      241 aggcaaaaat tttataaaaa tacttaaaaa gagtaatttt cttgattaat cttttataaa
      301 tataaacatt tgctaagcca aaaatcaata atacaatgaa agaaaaaatt aaaaatatca
      361 taaaagtatt ataaccaagt aaaattaaat atccgtataa atttttctgt tataataagc
      421 ttttaaataa ttttaaaggc tataaaatgt accgttttgc accttctccc acaggtgata
      481 tgcacatagg aaatttacgc gcagcaattt ttaattatat ctgtgcaaga caaaaaaata
      541 tggattttat cttacgtatt gaagatactg ataaggctag aaatatagca ggaaaagaag
      601 aagaaatcaa agaaatttta aatctttttg gtatttcatg gcagcattac tatatacaaa
      661 gtgaaaattt aaaattccat cgccaaatgg ctttaaaact tataagtgaa aaaaaagctt
      721 ttgcttgttt ttgtaccgaa gaagaacttg aagcaaaaaa agagttagct aaaaaacaag
      781 gtaaagctta tcgctacgat ggcacttgtg aaaaactagc cgatattgat gttttagaat
      841 gtgaaaaacc ctttgttatc cgtcttaaaa aacctactca tactatgaaa ttcactgatt
      901 ttatcaaagg cgagcttagt ttcgagcctg aaaacataga ctcttttgtc atcatgagaa
      961 cagataaaac tccaacttat aattttgctt gtgcggttga tgatatgctt gaaaatgtta
     1021 cttgtattat acgcggagaa gatcatgttt caaacactcc aaaacaagaa catatccgcg
     1081 caagcttagg ttataataaa gctatgactt atgcacactt gcctatcatt ttaaacgaag
     1141 aaggtgttaa aatgagtaaa agagaagcac attcttctgt aaaatggcta cttgaaagtg
     1201 gaattttacc tagcgcaatc gcaaattatc ttatcatgct aggcaataaa actccttgtg
     1261 aaatttttac cttagaagag gctataaaat ggtttgatat ttctaaagtt tcaaaagctc
     1321 cagcaagatt tgatcttaaa aaacttttgc aaatcaatcg cgaacatatc aaaatgataa
     1381 aagatgatga gcttaataaa attttagatt taaataaaga tcttgcacaa cttgctaaat
     1441 tttacactca agaagcaagc accataaaag aacttaaaga aaaaatgcga gctattttca
     1501 acacaaaaga ctttggagag tttgaaacag aatgtaaaat tttaaaagaa ctcttaaaag
     1561 atattgaact ttttgaaaac tatgaagatt ttaaaaatga acttttaagc aaaagcgact
     1621 taaaaggtaa aaaatttttc atgcctttaa ggataatttt aacaggaaat atccacggac
     1681 ctgagcttgg tgatctttat ccttatatta aaaattttat tcacgaatta gcaaggattt
     1741 aactatggtt atagactctt ttattatttc tatttttcaa gtactacaaa ttgtcattaa
     1801 catttatact tggattatta tcatcgcagc acttttaagc tgggtaaacc ctgatcctta
     1861 taatcccata gtgcaaattt tatataaatt aagttatcct gcttacacct tagttagaaa
     1921 aattccaaca cgcattggta atattgatct tgcgcctttg attatagtct tagcattgca
     1981 gtttcttggc atttttcttg ggaatatctt aaggagtata ttgtgataaa aaaaatactc
     2041 gtttttttat ttattttttc aagtttaaat gctacacaat atagcataga aaaactcaaa
     2101 aaggaagaaa attcacttgc taaggattat tatatttata ggcttttaga aaaaaataaa
     2161 atcagtaaaa aagatgcaca agatttaaat tctcatattt ttcgctatat aggaaaaatt
     2221 aaatccgaac ttgaaaaaat catcccttta aagccttata tcaacccaaa atatgctaaa
     2281 tgctatacct atacagcaaa tactatctta gatgcaaatt taacttgtca aagtgtgcgc
     2341 ttaaattcat tagtttttat agcgagttta aattccaaag accgaacgac tttagctcaa
     2401 acctttaaaa atcaaagacc tgatttgaca aatttattac tagcttttaa tacttctgat
     2461 cctatgagct atatagtaca aaaagaagat attaatggtt tttttaaact ttataattat
     2521 tctaaaaaat acgacttaga tttaaataca agtttagtca ataaactacc aaaccacatt
     2581 ggttttaaag attttgcaca aaatattatt attaaaaaag aaaatccaaa atttagacat
     2641 tctatgctag aaataaatcc tgaaaatgta agtgaagatt ctgctttcta tttgggagtc
     2701 aatgccttaa cttatgataa aacagagctt gcttatgact tttttaaaaa ggcggcacaa
     2761 agttttaaat cgcaaagcaa taaagacaat gctatatttt ggatgtggtt gattaaaaac
     2821 aatgaagaag atttaaaaac tttatcacaa agttcttctt taaatattta tagtctttac
     2881 gcaaaagaac ttactaacac accttttcca aagatagaaa gccttaatcc aagcaagaaa
     2941 aaaaataatt ttaatatgca agatcctttt gcttggcaaa aaataaacaa acaaattcgc
     3001 gatgctaacg caagtcaact agatgtcttg gcaaaagaat ttgacacaca agaaaccttg
     3061 cctatttatg cttacatatt agaacgcaaa aataatttta aaaaacatta ttttataatg
     3121 ccttattatg acaatataaa agactataac aaaacaagac aagctttaat tttggctatt
     3181 gccagacaag aaagtcgttt tattccaact gctatttcag tttcttatgc tttaggcatg
     3241 atgcaattta tgccattttt agccaatcac ataggggaaa aagaattaaa aattccaaat
     3301 ttcgatcaag attttatgtt taaacctgaa atagcatatt actttggaaa ctatcatcta
     3361 aattaccttg aatcgcgttt aaaatctcca ctttttgtcg cttatgctta taatggcggt
     3421 ataggattta ctaaccgtat gcttgcaaga aatgatatgt ttaagacagg caaatttgaa
     3481 cctttcttgt ctatggagct agttccttat caagaaagcc gaatttacgg aaaaaaagtt
     3541 ctagctaatt atattgtgta tcgacatctt ctgaacgata gtataaagat ttcggatatt
     3601 tttgaaaatt taattcaaaa caaggcaaat gatctaaaca aatcttagtt acaagcttag
     3661 tctcttcctt gacattagga agagatactt taaaataatc agtatagttg ttttgtatta
     3721 tatattttaa gtactcatca tccaattttt caatattggc ttttttatta ttgataaaaa
     3781 cttctaaatt ttgaattttt aatgtatttg gagtaaaaga caaggccaat acatcatctt
     3841 tacttgtctt atctagaatt ggatttaaat aagacatagt tataatggca ttaatcttat
     3901 cttgtgtgat tttgtatttt tgagtaaaca ttaaagtttg agattttaaa tttatatcca
     3961 caatcgcctg atcttttaaa gaacaagctc caagcaaaaa agcacctaaa attacactat
     4021 aaattttcat tctttttcca tattttttag tattattgta gccttttaac cctatttttt
     4081 ggtttaaaaa gatataattt tacaaaaaaa ttaagagtat attttatgaa acaacttatc
     4141 atggctttta gcgggccttc aaattcagga aaaactacac ttatcacaaa aatagctgat
     4201 aattttttgc aacaaaattt aaaagtttta atcattaaac atgatcctgc cgataaagct
     4261 caatttgatt ttaacggtaa agatagtttt aaatttttcc aaagcggagc tgaagtcatg
     4321 gttttaagcc ctacaagaac aacttttttt tctcatgaaa atagagatat tttaaaagct
     4381 ttaaaattag cacccaattt tgacatttgt ttggttgaag gattaaaaac tcttgattta
     4441 ccacgcatta gcgtattttg caaagaaatt gatgaaagtt attttacttt ttcaaacgct
     4501 attgcaagct atgaaaaaat ttcccaccct tatcttactt ggcttgattt aaacgatata
     4561 caagctattt gtcgatacat acttaaaaat gctaaaaatt tacaaggaga attataaaat
     4621 gcaagaagtg atttcttata tacaaaaagc ggttttagaa atttctaacg ctttaaaatt
     4681 tcccgataca agctacagtc aaaatcaaaa ttttacaggc gatacccaac tcaaatttga
     4741 tgttttaagc gatggaatca tcacaaaaac tctaagtcaa tgttcaagca ttaaagccat
     4801 cataagtgaa gaaaaagacg aaattttaac gcttaacgag agggcaaatt ttatcgtagc
     4861 ttatgatcct ttagatggtt ctagcttaat ggatgttaat tttgccatag gttctatttt
     4921 tgccatctat gaagaaaaag caagtgctaa aaatttaaga gctgcacttt atagtatgta
     4981 tggagcgcgc ttagaacttg tgatttgcaa agatcagcca aaactttacc gcttaaatgc
     5041 aaataatgaa tttattttta taaaagatct taaaatgaat gaaaaaggca agattaatgc
     5101 tacaggcgga acgcaaaaat tttgggaaga aaaacatgcc aaatttatca aaagtctttt
     5161 tgatgaaggc tatcgcttaa gatattctgg agccatggta agcgatatca atcaaatttt
     5221 attaaaaggg ggtggcattt ttagctatcc tgcaacacaa gatgcgccta atggcaaact
     5281 tcgtgccttt tttgaagtct ttcctctagc ctttatcata gaaaaagcag gcggaaaaac
     5341 tacaaatgga aaaaaccact ccttacttga acttgaattt gataaaatcc atgcgacaac
     5401 tccttgtttt tttggctcag aatatgaaat ttcaaaactt ttaaaggctt ataatgagtg
     5461 atattagaga tgaatttgag caagatatgg ataaaaaaaa agaaatttta ctttcatgtc
     5521 aaaactcaaa aaacctaaac tcttgttata attgcgatga aatttttaac tgccaaacta
     5581 gaaaaaatta tgttgatgca gtctataaca gtatgtctaa gggtaaaacc gaaggcggat
     5641 ttgactttta aaggaaaaaa atgcgttata ttacaacacc aatttattat gtaaatgatg
     5701 tgcctcattt aggtcatgct tatactacca tcatagccga tactttagca agattttatc
     5761 gtttgcaagg acatgaaaca agatttctaa caggaacaga tgagcatgga caaaaaatcg
     5821 aagaagctgc caaactaaga aattccactc ctcaagaata tgctgataaa atcagttttg
     5881 aatttaaaaa attatgggat gaatttgaaa tcacctatga tatttacgca agaacaactg
     5941 atacaaggca tattgaattt gttaaagcta tgtttttaaa aatgtggcaa aaaggcgata
     6001 tttataaaga tgaatacgaa ggacactatt gtatttcttg cgaaagcttt tttactcaaa
     6061 gtcagcttat caatgattgt tcttgtccag attgtggcaa aaacactacg attttaaaag
     6121 aagagagtta tttttttaaa ctttcaaaat accaagataa aattttacaa tggtatgaag
     6181 aaaaagatcc catcctacca aaaaacaaaa aaaacgaact tataaatttt gtccaaagcg
     6241 gccttaaaga tctttccatt acaagaacaa gttttgattg ggggattaaa ctgcctcaag
     6301 aaattaatga tgataaacat attatttatg tatggcttga cgcacttttt atctatataa
     6361 gctctcttga ttttcaaagc aagggagaaa atgctaaatt ttggcctgcg catgtgcatt
     6421 taataggaaa agatattttg cgttttcatg ccatttattg gccagctttt ttaatgagcg
     6481 tagatttacc tttgccaaaa tttataggtg cacatggctg gtggactaaa gaaggtgaaa
     6541 aaatgagcaa atctaaaggc aatgttgtaa aacctaaaga agtggttgat gcctatggaa
     6601 gcgaagcttt tagatatttc ttgcttagag aagtgccttt tggtaatgat ggggatttta
     6661 gcgaaaatat gctgataaat cgtatcaatg ctgaactaag caatgaattt gggaatttgc
     6721 ttaatcgcat tataggtatg agtacaaaat attctcaagg aaatatttta aaagaaggtg
     6781 ttttaaaata ttacaatact gaactaaatc aagcaaaaga acacttaaat ttagcggtag
     6841 aatttttaga aaacttacag tgtaatcgtt atttagaaga actttttaaa gccttaagcg
     6901 tagcaaattt agccatcagc aaatacgaac cttggaattt aatcaaagaa aacaaacacg
     6961 aacaagctaa cgctttagtt gcactttgtg caaatatttt agccaaaaca agccttttat
     7021 taagccctac tctaccaaag tcctgtgaaa aagtggcttt agctttaaat tttgaaattt
     7081 catctacaaa ttacgcaaaa atgatacttg ataatgaact tttagatttt aaagcaaatc
     7141 cttgcgaagc tttatttcca aaagtagaaa aagctctttt aaaacaagaa attaaagaag
     7201 aacctaaaaa agaagaaagt cctaaaataa aaatcgatga ttttgcaaaa attgaaatca
     7261 aagtcgctaa ggtgcttgat tgtcaaaata tagaagggag tgaaaaactt ttgaaatttc
     7321 aactcgaact tgacgataaa gaaatccgtc aagtactctc aggcatagca aaacactaca
     7381 aagccagtga tttaatcggt aaacaagttt gcattataag caatcttaaa aaagctaaaa
     7441 tttttggaca tgaaagcgat ggtatgatac tttctgcaaa aagcggagat aaacttgttt
     7501 taatcacccc tgaacaactt gtacaaaacg gttctttagt aggctaaaat atgcaaatta
     7561 gcaatttagg tgaactttta aacgcaacgc tcattcatga aggtagcgtt ttaagtgtgg
     7621 aaggttttgc cataaattta aacgaactta aagcaggctt tgccttcttt aataacgata
     7681 aaaaagaaat tacccaagct gtaaaaaaag gcgcttatgc tataattaca gaaaatgaca
     7741 ttactattga agataaagac attttttact ttagagtaga aaatctagaa caagctcttg
     7801 taagattttt acgctttttt tgtgaagata aagaatgtga atttttactt tttaaatctt
     7861 acgaactaag tctttgcaag gctttttatt ttaacatttt aaaaggaaat atttttgctg
     7921 attttgaaaa actaatcaaa gcaaaaaagg gtgaaatttt ttgttactgt gaagaaaatt
     7981 acttaaataa actttgcgcc tattctcata gtctaaaaga tgctaatttt accttattat
     8041 cgcgatctag cttctttttt acaactttga tttgtgaaaa tttatatttt aaaaatctta
     8101 atttgccttt ttt
//
LOCUS       DAEDTT010000072         7979 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.072, whole genome shotgun sequence.
ACCESSION   DAEDTT010000072 DAEDTT010000000
VERSION     DAEDTT010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7979
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.072"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1031
                     /locus_tag="KLC54_001229"
     CDS             <1..1031
                     /locus_tag="KLC54_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HBD9177601.1"
                     /translation="DYEAYYKPYIYDNYENFASFYDLLLQVQDDDIYFDFDKDEDTYI
                     VVNKQIIPLFTPLEKIAKEFDFSLCIEPLSTKRAIKDLIIDKNDFLDKYKYLEKFGNE
                     EDKKLYAKYDYLYYASEILDYLPEYMGDGVFYLASKMIEKYPEKKIEILKTLADKEKG
                     IFYHLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNAFDNEIKELKEIKHNF
                     KDFNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNPTLSYKIAADIVLDAY
                     DSGADFMVVKEEKDFYLFDTCAKKLMQTSGREFEDFYILSRFEFLALIEGIQAPSLKN
                     HTLKVSLI"
     gene            1028..1411
                     /locus_tag="KLC54_001230"
     CDS             1028..1411
                     /locus_tag="KLC54_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HBD9177602.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIHTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            1404..2087
                     /locus_tag="KLC54_001231"
     CDS             1404..2087
                     /locus_tag="KLC54_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmD family RNA methyltransferase"
                     /protein_id="HBD9177603.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPPKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALIAAEA
                     LSNYALKAYAIELDIKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDIREGFSDIYEKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYSS"
     gene            2146..3192
                     /locus_tag="KLC54_001232"
     CDS             2146..3192
                     /locus_tag="KLC54_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HBD9177604.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNNDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            3192..3533
                     /locus_tag="KLC54_001233"
     CDS             3192..3533
                     /locus_tag="KLC54_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177605.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKSKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            3596..3793
                     /gene="flgM"
                     /locus_tag="KLC54_001234"
     CDS             3596..3793
                     /gene="flgM"
                     /locus_tag="KLC54_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HBD9177606.1"
                     /translation="MINPIQQSYVANTALNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATAAAIADSLI"
     gene            3838..4272
                     /locus_tag="KLC54_001235"
     CDS             3838..4272
                     /locus_tag="KLC54_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HBD9177607.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFNINDGTNNAYGDKKTNPESIFKINV"
     gene            4282..6108
                     /gene="flgK"
                     /locus_tag="KLC54_001236"
     CDS             4282..6108
                     /gene="flgK"
                     /locus_tag="KLC54_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HBD9177608.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRFP
                     DLQNTGILQDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNNDHNANNDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLSGVDSGNDMANKIIQ
                     LQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            6125..6889
                     /locus_tag="KLC54_001237"
     CDS             6125..6889
                     /locus_tag="KLC54_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HBD9177609.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFIAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNESSLYELFYQAYQERENTTDAILAFMQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHAHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKEIDKFKE"
     gene            6893..7657
                     /locus_tag="KLC54_001238"
     CDS             6893..7657
                     /locus_tag="KLC54_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HBD9177610.1"
                     /translation="MGFEHLNTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFFTTLGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(7650..>7979)
                     /locus_tag="KLC54_001239"
     CDS             complement(7650..>7979)
                     /locus_tag="KLC54_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HBD9177611.1"
                     /translation="LENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVA
                     MKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWEL
                     SSGVNFN"
BASE COUNT         3075 a         1194 c         1268 g         2442 t
ORIGIN      
        1 aggattatga ggcttattat aaaccttata tttatgataa ttatgaaaat tttgcaagtt
       61 tttatgatct gcttttgcaa gttcaagatg atgatattta ttttgatttt gataaagatg
      121 aagatactta catagttgta aataagcaaa tcataccact ttttacacct ttagaaaaaa
      181 tagcaaaaga atttgatttt agtctttgta tcgagccttt aagcacaaaa agagccatta
      241 aagatcttat catcgataaa aatgattttt tagacaaata caaatatctt gaaaaatttg
      301 gtaatgaaga ggataaaaaa ctttatgcaa aatatgatta tttatattat gcaagtgaaa
      361 ttttagacta tcttcctgaa tatatgggcg atggagtgtt ttatttggct tcaaaaatga
      421 tagaaaaata tcctgaaaaa aagatagaaa ttttaaaaac tctagcagat aaagaaaagg
      481 gtatttttta tcatcttgaa agcaaaaatg aaattttaga aacaacgatc aaaaacctac
      541 aaaatgaaat tttaaattta gggctttttg ataaaaatat tttacacttt gatttaccta
      601 aaaccaatgc ttttgataat gagatcaaag aacttaaaga aattaaacat aattttaaag
      661 attttaatat agctttttat ggttttaatg cttgcgatac tttaaaatcc aaacttaagg
      721 ctaaatttat ttcctatgaa aacagtataa aaaataatgg ctttagcttg cttaatctaa
      781 atcctacgct aagctataaa atagccgcag atattgtttt ggacgcttat gatagcgggg
      841 ctgattttat ggtagtaaaa gaagaaaaag atttttatct ttttgatact tgtgctaaaa
      901 aacttatgca aacaagtgga agggaatttg aagactttta tattttgagc cgttttgagt
      961 ttttagccct tatcgaaggc atacaagctc catcattaaa aaatcacact ttaaaggtta
     1021 gtttgatatg aaaatctctt tagaatgcaa agatctcatc atagaaaaaa ctttagaact
     1081 ttttttaaaa gatcatttgg taatgaaaaa aaattgtgat ttcatcatta gcgatgaaaa
     1141 aattcatacc gcaaaaccct tatttatcat ctctaaaaac tctccatttt taagcatacc
     1201 atttagcaaa gaagccttgt ttgagtcttt aaatgaattt gataatgcct taaaagcagc
     1261 agctttgcaa cttgcacttg aacaaaaacg actgcttgaa gaaaaaattg acgctattgc
     1321 tttggaattt aaaaaagatt atgaaaataa aatcgatctt gccataaaag atcttaaaaa
     1381 caaactcgta aaagcactta atgatgaatg atgaatttat aagcgttaaa gactttttta
     1441 atcacaatga aaaaagaaaa aaatttcttc aaaaacaaga aattaaacct cctaaagaaa
     1501 aaacaaaaaa aactaaagaa acaaagcttt atacaaatat agaaagtggt aaatacaaag
     1561 ggaaaaaact acttttacct agtcttacaa caacaagaag tactaaaagc atagtcaaaa
     1621 gttgtgtttt taatgtaata agagaagatt taagaagtaa aattttcatt gaagcctttg
     1681 gcggaagtgc tttaatagcg gctgaagcac taagtaatta tgctttaaaa gcttatgcta
     1741 tagaacttga tataaaagct tataaaattg ctttagaaaa tgctaaaaat atagatccaa
     1801 atttagaagt gatccatgca aatacttttg aaattttacc taaactcata gaaaattcaa
     1861 aaaatgaaat catcttatat cttgacccac cttttgatat cagagaaggt tttagtgata
     1921 tttatgaaaa aatttatcat tttttagaaa atttagattt aaagacttta aatttaatca
     1981 tttttgaaca ccactcaacc ataaaaactc ccgaaaaaat ccaaaatttt caaaaagtca
     2041 aagaaaagaa atttggatca actagcttaa gtttttactc ttcttaactc acttggaaca
     2101 ctttttgctt gatctatcat caacaataga ttaaaggaag aatccatgag agttttaacg
     2161 atatttttac tctttatgac aagcattttt gcagtgcaaa tcaaggatgt agcaaatact
     2221 gtaggtgtaa gagataacca acttataggt tatggacttg ttgtagggct taatggaagc
     2281 ggcgatggaa caagctctaa atttacacta caatctatct caaacctttt gcaaggtatg
     2341 aatatcaaag tagatcctaa tgatatcaaa tcaaaaaata ccgcagctgt tatggttaca
     2401 gccaaacttc cagcctttgc aaaaagcgga gataaacttg atattaccgt ttcatctatg
     2461 ggtgatgcaa aatctttaca aggtggaaca cttttactaa ctgcacttcg tgggattgat
     2521 ggtgaaattt atgctatagc acaaggctct atctcaacag gaggtttaac acctagacca
     2581 ggaggagcag gttctcactc aactgctgca actgtaatgg gcggagctaa tgtagaaaga
     2641 gaaattccac aaaattttag ccaaaacaat gatctaacct taagtttaaa agtagcggat
     2701 tttaaaaccg caaacgatat agaaagagtt ttaaatactg tctttggcga agaagtagct
     2761 aaagccatcg actctcgcac agtaaaactc aaaaaacccg aagatctttc aaatgttgat
     2821 tttatggcaa gagttttaga acaagatata gcttataaac cacaaagcaa agttatcatc
     2881 gatgaaagaa caggaacagt gattgctgga gttgatgtag aggtagaacc tgttttaatc
     2941 actcataaag atatcactat aaaaatagat ccaaacaata acgcagtagc taatcaaaat
     3001 gaaatcgata tgaaagatgg tggttttgta gatccaagtt caaatacctt aagaatcaac
     3061 aatgccaaaa gcacagttgc aaatatagct agaatgctta acaaacttgg agcaacccca
     3121 aatgacatta tcgctattat ggaaaattta aagcgcgcag gtgcaattaa cgcggatttg
     3181 gagatcatct aatgaaagtg gataattttt taaatactta tagtatgaat agcgctttac
     3241 ttgatcgtgc agccaaagca agaagtttag aatcaagcat caaaataaat gacaatgata
     3301 tagttacaaa gagcaaagaa gatgaagcct taaaagaaca aacggatgct tttgaggcat
     3361 tttttttaaa gcaagtttta gatgtatctt taaaaagtca aaattcactc tttggaaaag
     3421 atgccagcga tgaaatatac tcttccatgt ataatgatac catgagtaaa gctttaagtg
     3481 gaggtatggg tttttcaaaa ttattatacg attttttaaa agaaaggggt taagtttttt
     3541 aaatttaggt cgatatggtt tgtagaggat tataactaag atcaaggagg cagaaatgat
     3601 caatcctata caacaaagtt atgtggcaaa taccgcatta aatacaaata gaatagataa
     3661 agaaactaaa acaaacgata ctcaaaaaac ggaaaatgat aaagcgagta aaatcgcaga
     3721 gcagattaaa aacggtactt ataaaatcga tacaaaagct acggctgctg cgattgctga
     3781 ctctttaatc taaaaacttt cattctcctt tttttgagag agagaaaagg agaaaatatg
     3841 cttaaacaaa gacttgatga agtaaatgct atcttagcaa aacttattgc tttaaccgaa
     3901 gaagatatag aaaatatcaa agtggctaaa catgagagtg taacgccaag tgtagaagaa
     3961 aaaaacaaac ttatcgcgga atttattaca gctaaaaaac aacttgatgt tgccttagtt
     4021 gagctaaata atagctctac aaaagggctt agtgaactct tagatgatga agataaacaa
     4081 aaactagatc tacttaaaaa aaatcttcaa aaccttcata gtaaaaacaa agagtatgct
     4141 aaatttgttc ttattgtcaa agattttctt gatggcttag taaataaaat gtttaatatc
     4201 aatgatggaa caaataatgc ttatggagat aaaaagacaa atccagagtc aattttcaag
     4261 atcaatgtat aaggatttat aatgggtatt tttggaacat tatacacagg tgttacaggc
     4321 ttaaaggcaa gcgaagttca aatcgcaaca actggaaata atatctcaaa tgctaatgca
     4381 actttttata cacgccaaag agtggtgcaa actacaaatg gatatattac aacaggtgga
     4441 gttcaagtag gtacaggaac tgctgtagaa agtatagtgc gtttgcatga tgagtattct
     4501 tactataaat taaaaggtgc atctactcaa ctagaatata ctaaatatat ggcttccact
     4561 ttacaagaaa ttgcgcagcg ttttcccgac ttacaaaata ctggaatttt gcaagattta
     4621 gaaaattata acaaagcttg gaatgatttt gcatctaacc ccaacgaaaa tgccacaaaa
     4681 atagcccttg taaaagcttc tcagacctta acagaaagcg ttaataacac ttttgcaacc
     4741 ttagataaaa tccaaaaaaa agtaaatgat gatattaaaa atacagttga tgagattaat
     4801 agaattggcg aagaaattgc tactataaat aaacaaattt atggacaaga agccttacca
     4861 acagaacacg caaatgaact tagggataga agagatgaac ttgagcttac tctttcaaag
     4921 ctagttagtg cagttgcaag caaaaatgaa atcaatcaag acaatcgcct tgatacaacc
     4981 atcactgatc caggacatca atacaatcta agtatagaag gttttagtat agtagatgga
     5041 ataaattttc atcctttaaa gcttgattat gatgataaaa ataaatctta tagcatttat
     5101 tatgaaactc ctgatgaaaa agttcgcgat cttactgcaa aaattagcgg tggacagctt
     5161 ggtgctcaac ttgacttacg cggtagaaac tatagcaaaa gcgaaggaaa atatgaagat
     5221 ggaattatcc aaggttatat ggattcttta gatacttttg ctaagaccat gatcaatgaa
     5281 actaacaatc tttatgcaag ttctgcgaaa agttctgtta cttctgatta tctatctggg
     5341 cttaagggag atattccttt agttaattac gatagaacca tacaaccagg aagttttgat
     5401 atagtcattt atgatgataa aggcgataaa aaactcacca aaaccatcac catagatgta
     5461 aatacaacca tgaatgatat catgcgtcaa atcaatgcta acacagatga taataacgac
     5521 cataatgcaa ataatgatgt tgatgatcat atcaatgcaa gttttagcta cgatgcaaaa
     5581 actggagatg gtttatttca aatcaatgca aaatcaggtt ttaaggtagc cattgaagat
     5641 aagggcacaa atttcgcagg tgcgtttagc ataggtggtt ttttcagcgg aactgatgca
     5701 agtaatatga aagtaaaaga ttccatctta aatgatccaa gcacagtaag agcaagttta
     5761 agtggggttg atagtggaaa tgacatggca aataaaatca tccaacttca atatgaaaaa
     5821 gttaattttt ataatgaaga tggcactatc gataatctta ccatggaaga atattaccgc
     5881 aaacttacag gtaaaatagc ctcagatggt gaaaataaca atgtcgtcaa ttcaagcaat
     5941 gaaactcttt ataattctgt ttatagcgag taccaatcta aaagtggcgt aaatacaaat
     6001 gaagaattag ccgcccttat acaatatcaa tcaagttacg gtgcagcagc aaaaatcgtc
     6061 tctaccgtag atcaaatgct tgatacctta ctagggctta aatcttaagc tctagtaata
     6121 tcaaatgaaa aattttatcc atcttaaagc taagcttgat tttttagcca atcaaaaaaa
     6181 taccaatcat tccctttttg aaactccaga tcctttgcaa attgctaaaa ttcacaatga
     6241 tgaatttatt gccttaattt gtgctttatt tgcctatgga aatgctaaaa atatagtaaa
     6301 ttttctaaag aaacttgatt tttctttatt aaaccttcaa gaaaaacaaa taaaaaaaga
     6361 acttaaaaat ttaaaatacc gcttccaaaa tgaaaaagat atacaagaaa tttttatcac
     6421 tctttcaagg ctgaaaaatg aaagttcact ctacgaactt ttttatcaag cctatcaaga
     6481 aagagaaaat accacagatg ccatcttagc ttttatgcaa aaaatcaaaa ccttaaattc
     6541 atattcaagt tatggatatg attttttctt tggaaaaatt tggcaaaaca cccctacttc
     6601 acctcttaaa cgctataata tgtatctaag atggatggtt agaaaagatg aacttgatct
     6661 tggacttttt accaaaattc acaccaaaga tcttttaatc ccacttgata cacatgcaca
     6721 taaaatttcc ttgactttag gacttctaaa gcgtaaaata tatgattata aaagtgtttt
     6781 agaactcaca caaaatttaa aaaaattaga tgcaaatgat cccataaaat atgactttgc
     6841 actctatcgt ttagggcaaa gtaaggaaat tgacaaattt aaggagtgaa gaatgggttt
     6901 tgagcactta aatacaattt attatttcat actttttttt gtagctcttt ttgctggttt
     6961 tatagattct attgtaggtg gaggagggct tattactcta ccagcactca tagcctgtgg
     7021 aattcctgcg catttatcct tagcaacaaa caaactccaa agcgtctttg gttcttttac
     7081 agctacttta acttatttta aatccaccac tctacctcat cttgcttggg gtgttttttt
     7141 cacaacctta ggagcagcta taggaagtta tagtgttctt tttgtaaaag atgagcaatt
     7201 aaagcttatt atcttaatct ttttaactct taccttctta tatacagcct tacgtcccaa
     7261 cttaggcaaa cacgaaagcg aacctaaaat aaaaaatatc aaaatttttc atttaatttg
     7321 tggcttaact ttaggatttt atgatggatt tttagggcct ggaacgggtt cattttggat
     7381 ttttgcttgt gtgatgctac taggttttaa tatgagaaaa gcgagcatta atactaaaat
     7441 tttaaatttc acaagcaaca tcattgctct tgctatattt ttatggcaat atgaactttt
     7501 atgggctgta ggtttgctta tgggtgtagg acaagtttta ggagcttatt taggctcaaa
     7561 acttgtatta aaaactaatg gaaagtttat aaaaacttta tttttaatcg ttgtaggagc
     7621 tactattatt aaagtagctt gggattattt tagttaaaat tgacccctga gctaagctcc
     7681 cacataggta aaaatatacc taaagccaaa aacaaaacta aaagcgctac aaataaagtc
     7741 atcataggct ctaaaaaaat caaaaatcta tccatcaaat tttcgctttt ttgttgataa
     7801 tatttggcaa tttcttcact taatacttca agtctcccac ttttcatcgc aacactaagc
     7861 atagaaaaca ccaaagaatc aaaaatatca atctttttaa aagcctgact taactcaaga
     7921 ccagaatcta taaaactaaa aagtttttta tactgaaaaa ttaaaaattt attttcaag
//
LOCUS       DAEDTT010000073         7769 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.073, whole genome shotgun sequence.
ACCESSION   DAEDTT010000073 DAEDTT010000000
VERSION     DAEDTT010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7769
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.073"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..402)
                     /locus_tag="KLC54_001240"
     CDS             complement(<1..402)
                     /locus_tag="KLC54_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HBD9177612.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYHLFRIFAYIALGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFIKKIIKKSKNFKGLKSAIFL"
     gene            complement(399..1517)
                     /gene="carA"
                     /locus_tag="KLC54_001241"
     CDS             complement(399..1517)
                     /gene="carA"
                     /locus_tag="KLC54_001241"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HBD9177613.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYATYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            complement(1517..2068)
                     /locus_tag="KLC54_001242"
     CDS             complement(1517..2068)
                     /locus_tag="KLC54_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HBD9177614.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            complement(2161..2679)
                     /locus_tag="KLC54_001243"
     CDS             complement(2161..2679)
                     /locus_tag="KLC54_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HBD9177615.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEEQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            complement(2672..3100)
                     /locus_tag="KLC54_001244"
     CDS             complement(2672..3100)
                     /locus_tag="KLC54_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HBD9177616.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAKEKVELSKKEMNHYQFLYQKAHLDYE
                     KMKALETEEIKQKQKEFAKAEEKFLDEIAISRFFKGEKDD"
     gene            complement(3097..4347)
                     /locus_tag="KLC54_001245"
     CDS             complement(3097..4347)
                     /locus_tag="KLC54_001245"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HBD9177617.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALMK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYATRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            complement(4375..4472)
                     /locus_tag="KLC54_001246"
     tRNA            complement(4375..4472)
                     /locus_tag="KLC54_001246"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4436..4438),aa:Sec,seq:tca)
     gene            4613..5821
                     /gene="yedE"
                     /locus_tag="KLC54_001247"
     CDS             4613..5821
                     /gene="yedE"
                     /locus_tag="KLC54_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HBD9177618.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWAYRAFEGQSHFMIV
                     GIANIIGTMILALSYDFLPKAFKEGIKINLLTEFGNLNGFFINLILFILIFAFVVFYK
                     KYFFKNQLKG"
     gene            5825..6052
                     /gene="yedF"
                     /locus_tag="KLC54_001248"
     CDS             5825..6052
                     /gene="yedF"
                     /locus_tag="KLC54_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HBD9177619.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLQSGEILEVLCDCPQSI
                     NSIPQDAKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(6068..7537)
                     /gene="putP"
                     /locus_tag="KLC54_001249"
     CDS             complement(6068..7537)
                     /gene="putP"
                     /locus_tag="KLC54_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HBD9177620.1"
                     /translation="MEVVQINTPIAVMFVAYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGVISIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHVVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLAASVVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(7555..>7769)
                     /locus_tag="KLC54_001250"
     CDS             complement(7555..>7769)
                     /locus_tag="KLC54_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177621.1"
                     /translation="KSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFE
                     LLNYFNEKALSISFHRYGNLGIRAIS"
BASE COUNT         2559 a         1460 c          983 g         2767 t
ORIGIN      
        1 taaaaatatg gctgatttta atcctttaaa atttttagat tttttaataa ttttctttat
       61 aaaactatca aaaaaaacat tattttcaat aaaagataac atattgcctc taaaaataag
      121 agcaaaaccc aaaatcatca taaatatacc aagaataaaa aatgacaaac tttgaacctt
      181 agcattgatt gctaagatat tcccaaaagt tccaaaaatt atccctaaag caatataagc
      241 aaaaattcta aacaaatgat aaataaaagt taataaaaat aaattattgc tttttgaatt
      301 caaatttata aaaagtaaat taaaaccacc acacatagaa tagcagtgtc caaaactaga
      361 taaaaaagca acgctgataa tagctaaaaa atctatactc acatcaaatt cataaattct
      421 ttaaaaatat acttgctttc atgagggcct gaagaacttt ctgggtgatg ttgcactgaa
      481 ataataggat agtctttata tcttactcct tcaacattat cgccaaataa atttctatga
      541 gtgatatgag ccacttgagc taattcttct ggaacattat aattatgatt ttgtgcggta
      601 atttctaccg tttttgtatc aagattgatc acaggatgat ttgctccatg ttgtccaaat
      661 ttcattttat aagttgcata tccaaaagca ttacttaaaa gctggtgacc taagcaaatt
      721 ccaagcatgg gaattttagc ttctgcaagt tttttaatct ctgcaatctc ttgttttaaa
      781 atccttggct cacctggacc attagaaaga aatacgcctt ggatttcacc ttttttatac
      841 agagtaatca actcatctgc tttaacatta tatggataaa cttctacttc aaaacctact
      901 tctacaagtt catttaggat atttgtttta acaccataat ctataacagc aacttttttc
      961 tcacttcttt tagcatcatt aaatttttga aaactagcgt tccaaacacc ttgtttatga
     1021 gaataatttt tcttagtgct aacttctttt acaaaattta cttcatcaat ttttgctgat
     1081 ttttctaagg cgatttttaa atcttcttta tttgaaattt cagttgaaat tacagctctt
     1141 aaattgccat tatttcttat catttttact agatatctcg tatcaagttc ataaattcct
     1201 atttttccat gtttttcaag ataatcttgc agactttctt tagcgcgaaa atttgaaaaa
     1261 ctagaactta attcacgcat taaaacacca cttgcaaaaa tttccttact ttcattatca
     1321 ttttcattgg ttcccactat accaatttct ggcatggaaa atacgataaa ttgccctgca
     1381 taagaaggat ctgaaataat ttcttgatac cctgttaaag aagtgttaaa cacaagctct
     1441 ccaaaaaaag taccgctctt tccaaaagcc ttagcactta aaaaaatatc attttctaaa
     1501 taaatataag ccttcattaa aacatacctt tttttctaag ctcttcttga tagagttttt
     1561 caaagataag atcgtattct tcgctacctg gaataggttt tgttttataa ttgctaattt
     1621 tctcataaac ctcatcttca agtttttcat aaattttaag ataagactct atgcttgaaa
     1681 agattaaatt tttaactcta ttttcactca ctataaaatt aatataatca ttctctacaa
     1741 gttcttccaa aatttgatgc gctagatgat tatgtctatc ttcagaatct aaaatcacat
     1801 taaattcagg agctaacttt ttcttcacaa gccaaaacat atttttacga tctacttgca
     1861 taagctccat ttcatcttct tgttgctcta aaagctcttt tactctttca tctaattttc
     1921 tttcatttag aatatctttc tctaaaactt ctattataca taccttaagc ttttctaatt
     1981 gatctttaat ttctacaaaa gaagaattag ctatatctaa catcatttta tttgcgatat
     2041 aaggaatatg tggtaatttt atacgcatct tgaaaacctt ttatttaata atgtttgaaa
     2101 taatagctta tttttggtaa aagaatgtta aaaatgaaaa attttcattc ttttaatcac
     2161 ctaattacta gcattattat ctaaattttt caaaagtaaa gtaagctcgc tagctttttt
     2221 tggatccatt ttagataaaa cacctgaaat tttacgcgat tccaaagaaa gcattatttt
     2281 acttgcatcc tctgcatcca tttgacttaa aacatctgca atggctgcat ctttcatttg
     2341 ggaataaatt tctttaaccc taccttgagt tttatcattg attgaattta aaatcttttg
     2401 ttgttcttct acaagccttg cgttttcaag ctttaattct tcaatttttg ccaaagttgc
     2461 attaacctca gcctcttttt tttctaaatt ttcaagcctt tctttttgca aagcttcaaa
     2521 agaggcttta taagcttcta aagattgtct tgcttcatca aattctctag tttgcaattc
     2581 aatttgagct tttctagctt caaaatactg ctcacaatct tgttcagctc caaaaactac
     2641 acttgaaata aaaactaaca atataaattt tttaatcatc tttttcccct ttgaaaaaac
     2701 gactgattgc aatttcatct aaaaattttt cttcagcctt cgcaaattct ttttgttttt
     2761 gtttaatttc ctcagtttcc aaagccttca ttttttcata atctaaatgc gctttttgat
     2821 ataaaaactg ataatgattc atttcttttt tagaaagttc tactttctcc ttagctcttg
     2881 ccaaagcctc gcgtcctact tgcgccatac ttaaatttga tcttaattct gctatagatc
     2941 ctgattttgg caatacgcct aaactttcac actcttggcg tgaaagttca taagcttttt
     3001 catgttcaag ctgtctttgt ttggcttgat taagatttga ttctgcttta tcaagttgtt
     3061 gttttcttac ttttacaaca gaattatatt tacttttcat aagatgatag tatcatctct
     3121 ttcagggcta gtggaaatat actttacttt aacccctgca agctcttcaa gtcttgctat
     3181 atatttttta gcattttctg gcaataaatc ataatctttt ataccaaaaa ctttatccca
     3241 accatccatt tcttcataaa taggttgaac attttctaaa tcacttggta tatagtcgat
     3301 ttccatgccc ttatattcat aagcacgaca aatttttatc ttttcaaaac catctaaaac
     3361 atcaagcttc atcaaagata aagcatcaag accattaagc cttgctgtat atcttacagc
     3421 aaccgcatca aaccatccac agcgtctttt acgtcccgtg cttacgccaa tttcttttcc
     3481 aatttgtgca attttttctc catcttcgcc cttatcctca gtaggaaaag ctccatttcc
     3541 cacacgcgtt gcataagctt ttacaatacc tataatattt cccgcttctt taggatttaa
     3601 tccaagtcct gttaaagcgc ctgctgaaat agtacttgaa cttgtaacat aaggataagt
     3661 tccatgatca atatcaagca tagagccctg agctccttct aaaagtactc ttttatcttc
     3721 atctaaagcc ttccaaagca ttcttgtagt atctgtaata taaggagtta aaatttcatt
     3781 aaagcgtttt aaatcagcaa gcaattcttc agcacttgga atttcaattt caagcatttc
     3841 aaaaaaagtt ttattagctt caaaatcttt catcaaagcc tcacaaagtc tttgtggttc
     3901 taaaagctct ccaactctat gtcctgtacg attaatctta tctgcataag aaggtcctat
     3961 acccttacct gttgttccta tggcattttt gcctttgagt ttttcttttg caatgtctat
     4021 taaagaatga tgttttaaat ttaaatgagc tctatcactg atatataatc taccttttaa
     4081 attttcaaat tgagccattt cagcaatcaa tacttcagga gaaaccacaa ctccatttcc
     4141 gataatatta atacatcttg gatgcaaaac tccacttggc ataagatgaa gcgcatatct
     4201 tacaccattt acccaaatcg tatgtcctgc attgtgtcca cctgcacttc tgcaaacaaa
     4261 atcataattt tcacataatt tatcaactac cttacctttt ccttcatcgc cccattgaat
     4321 gccgacaata atatctgctt tgctcataaa aatttccttg attttactta atattggcga
     4381 gaagatgaga gaatcgaact ccccaaagaa tagtcaacta tcctttcatc tgatttgaag
     4441 tcagtggcga tcaccagata cgctaatctt ccaaagtgat aattatagcg atttttaatg
     4501 aaaaacaaaa taaatttatc aatattcttt ttgacttcat gttaaattta agctataatc
     4561 tcactctttt tttagcatca agttttgatg attacatttt taggatcttt ctttgaattc
     4621 ttttaaacaa aaatatttaa tcaatttttg ggacaattcc cgttctatga ttgcacttgg
     4681 aattttaagt gcagtgtatt ttgggatttt tggtggcgtt tgggctgtta ctggagaaat
     4741 gacgcgttgg ggtggtgaat ttttagaact tttaggtatg aatttagatg ggtattctta
     4801 ttaccaaaag caaaatttaa atggaacccc tttaacaaga actgatggta ttatgctcat
     4861 aggtatgttt ataggttgtt tagtagccgc acttttagct aacaaagtca aatttcgtct
     4921 acctgctagc aatataagaa tttttcaagc aatagtaggt ggaattcttt caggatatgg
     4981 agcaagactt gcatttggat gcaatttagc taattttttt acaggtttac cttatttttc
     5041 tttacacact tggcttttta ctgtttttat ggttttagga atttatctag gagtgaaaat
     5101 ttgcaacact tcctttttta aacctaaagc taaattagaa cgggtaaata aagaaaactt
     5161 gccgctaaat aagcaaagtt tgcgtacaaa actatatttt aacttaggca tattgctttt
     5221 catagccttt ttagtttggg tgttttatct tgtttttaca aatggcaata tcagcacaca
     5281 aaacaaacaa agtcttctag ctttagcact gatttttggt tttgtttttg gctttgttat
     5341 ttctagagga caaatttgtt ttacttcttg ctttagagat ttatttttat ttggtagaga
     5401 taatgctata aaaggcgcat taattggcat gattatcgct tctttaatcg cttttgcttt
     5461 tatcttgcaa ggtcatacta gcaaactcat agaactttct cctgctgtag ctgtgggagc
     5521 atttttgttt ggttttggca tagtttttgc cggaggttgt gagtgtggtt gggcttatcg
     5581 tgcctttgaa ggacaaagtc attttatgat agtaggaatt gctaatataa taggaactat
     5641 gattttagct ttaagttatg actttttacc aaaggctttt aaagaaggta taaaaatcaa
     5701 tcttttaacc gaatttggca atttaaatgg attttttatc aaccttattt tattcatctt
     5761 aatatttgct tttgtagtat tttacaaaaa atacttcttt aaaaatcaac ttaaaggata
     5821 aacagtgaaa attacttata gtttaaattt acaaggtgaa gcttgtcctt atcctgctat
     5881 agcaacactt gatgtcttac ctaagcttca aagcggagaa attttggaag tgctttgtga
     5941 ttgcccacaa agtatcaatt ccatacctca agatgcaaaa aaccgtggtt ttaaagtgct
     6001 tgaaatcgat caaagtggac ccacgctaag atttttaata caaaagcctt aaaaaaggct
     6061 tttgttctca aagctctttt aacatctttt cataagctgc tttagttcca gatcttacat
     6121 ttgtaaataa acttgcaata ataatcacca ccgaagctgc taaaaaccct ggaactattt
     6181 cataaagacc cgaatttgca aaattcttcc aaagtaccac agtagcagct cctgttatca
     6241 tacctaagat cgctcctact cttgtcatcc tactccaaaa taaagaaaaa agcattacag
     6301 aaccaaaaga agctccaaat ccagcccatg cataagaaac tatactcaaa acacttgagt
     6361 ttttatcagt agaaatcaaa aacgctatta cagctactag taaaacacct aatttaccta
     6421 aatttaatac aacatgactt ggcgcatctt ctctaaaaat ctttttataa aaatcttccg
     6481 ctatagtaga acttgaaacc agcaattgtg aacttgccgt actcataata gccgctaaaa
     6541 tagcactgag taaaatacct gctatccaag gattaaataa aagctgcgac atcacgatga
     6601 aaatcttttc aggatcttgc aaacttaatt caaatttatg cacataagct atacccaaaa
     6661 tacctatcat acaagcactt aaaagacaaa ccgccatcca agcaatacct ataaaagtgg
     6721 ccataggaat atctttagta gaacgaatcg acataaaacg cactaaaata tgtggttgac
     6781 caaaataacc caaaccccaa gcaagtgcag atataatact tataactccc actccttcgc
     6841 ccatagataa agcttgtggc tttatttctc ttactatatt catcgcttca ccaaagccac
     6901 ctaaatgata aagcataacc aaaggcacaa tgattaaagc catcatcatt aaaagccctt
     6961 gtatcatatc cgtccaacaa actgccttat atccacctaa aaaagtataa gcaacaataa
     7021 taatcgttcc agtagttaaa gcataatcat atctgatacc aaaagtactt tcaaaaagtt
     7081 ttgctccact tacaagccct gatgaaacat aaaaggtaaa aaatatcaaa attaccaccg
     7141 cacatacaat gcgtagtatg tgtttatcat catcaaaacg agtttcaaaa taatcaggaa
     7201 tagtcaaaga atttgcaatc acgctggtat aaattctaag tctttttgcc acaaaaatcc
     7261 aatttaaact agctcctata gtaagtccaa ttgcaatata agaatctata aagccactta
     7321 catataaagc tcctggtaat cccattaaaa gccaaccact catatcagaa gcccctgcgc
     7381 taagtgcaga tatcacaggc cccatagtac gcccacctaa aaaataatct tctgaatttt
     7441 tattttgctt ataaaaataa aaacctatat aaagcatcaa taaggcataa gctacaaaca
     7501 tcactgctat tggggtatta atttgaacta cttccatcaa tctctccttg atcattaaga
     7561 tattgctcta atgcctaaat ttccatagcg atgaaaagat atacttaaag ctttttcatt
     7621 aaaataattt aaaagttcaa aacgaccatt taacaatggc ttttctctta tgatgatttt
     7681 agcaagcttt gcagcctctt tataaatctc atcatttaca tctggctttg ccaaataacg
     7741 cactctttca tattctttaa tactcttga
//
LOCUS       DAEDTT010000074         7738 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.074, whole genome shotgun sequence.
ACCESSION   DAEDTT010000074 DAEDTT010000000
VERSION     DAEDTT010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7738
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.074"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..1271)
                     /locus_tag="KLC54_001251"
     CDS             complement(<1..1271)
                     /locus_tag="KLC54_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HBD9177622.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKNSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWLNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQDQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELILKELS
                     YKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKKYFLKN
                     IEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLMKFYASKYGVSVYHATNGKENIVILPKKL"
     gene            1244..1516
                     /gene="yajC"
                     /locus_tag="KLC54_001252"
     CDS             1244..1516
                     /gene="yajC"
                     /locus_tag="KLC54_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HBD9177623.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            1509..3089
                     /gene="secD"
                     /locus_tag="KLC54_001253"
     CDS             1509..3089
                     /gene="secD"
                     /locus_tag="KLC54_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HBD9177624.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVSDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVIFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKSNNTRFWFGYRRR"
     gene            3089..4060
                     /gene="secF"
                     /locus_tag="KLC54_001254"
     CDS             3089..4060
                     /gene="secF"
                     /locus_tag="KLC54_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HBD9177625.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILEKQGTFQNLSVTEFGSNEEVTIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            4070..6499
                     /locus_tag="KLC54_001255"
     CDS             4070..6499
                     /locus_tag="KLC54_001255"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HBD9177626.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKAIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYTQKSGKLIHSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQSCGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKALRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            6496..7008
                     /locus_tag="KLC54_001256"
     CDS             6496..7008
                     /locus_tag="KLC54_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177627.1"
                     /translation="MKKILIFCIGLFLGACGYVPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            6992..>7738
                     /locus_tag="KLC54_001257"
     CDS             6992..>7738
                     /locus_tag="KLC54_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177628.1"
                     /translation="MIPNTNEIAKQTLITLKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFF"
BASE COUNT         2789 a          906 c         1436 g         2607 t
ORIGIN      
        1 agctttttag ggagtataac tatattctct ttgccatttg tagcatgata aacactaacc
       61 ccatatttac ttgcataaaa tttcattaag agttgctgga gtttgtattc gctgctatta
      121 ttaaaccaag cattgttgct tagggctata ataatttgtg aattttgata gttttgttct
      181 ttggtagctt cataacaaat tgcatttgtg ataatttgat tatctaattt atatttgctt
      241 tgtataggac ctttggaaaa ttcttcaata tttttaagaa aatatttttt tgttaagtct
      301 ttaaaaaatg gaatttcttc accaaaggga actaaaaaat gcttatttaa aatatagaca
      361 ttgccttttt taaagatata agtgctatta taagtatgct ctttttcaac atgaaatgct
      421 cctgtaataa tggtgatttt ataagataat tctttaagta taagctcgta tttggtattt
      481 tttaaatcaa aagcaaaagc ggtttcaggc aagattacaa gttctttttt ttcatttata
      541 gcttgaagta tatcttgaat taagatatca gaatttgatt ttaaattttc ttgtaaaaat
      601 ttttgatctt gagagatatt agtattgatg agtttatagt ttaaattaag agtttgagct
      661 tgtttttcat tatattgaaa tccactaaag aataaaataa gaacaatcgc tattttataa
      721 tatcttgata tataaccctc atagatgaaa tatgctatta aaaatatgca aataatacca
      781 cgataacttg ggtcaaaaaa accataaact gtaaaaattc cccaattaag ccaatcaaat
      841 cctaaaggat ggataaaact tatgcaaaaa attccacaaa gccttaaaaa atcaaatttt
      901 aataaataac ataatctaaa aagtagtcca taaataaaac caatgataat tggtataatt
      961 ggcactaaat agtttagatt aaaataaatt gaagataaac caatccacca aaaccaaaga
     1021 atccctacaa aaaaacctat ccaaaaatat tgtttagaat ttttactttt taggagtaaa
     1081 actaagcccc aaatagctaa aaatgggcta atagtttgtg taaaaatatt ttcaaaaaat
     1141 gatagataaa tagaatttga aagtaaaatt gcaataaaaa agacttttat tattttaaaa
     1201 atgatagaat tagtgtttaa tttttttgga ataaaggaaa aatatggcag aaaattcaat
     1261 tttaacttca ttgttacctc ttgtagtgtt atttgcaatt ttttatttct tggtgatcag
     1321 accgcaacaa aaacaagcaa aagcacataa acaaatgctt gagtctttgc aaaaaggaga
     1381 taaaatcatc actaatggcg gacttatttg cgaagtcgta aaaccagagg aggattttat
     1441 caaagttaag cttaatgaag acaatgttac tgcaaaaatt tcaagagaat ttatagcaaa
     1501 gaaaattgat gcgtaattct aaaatcaatt atcgcttgat tatttttata gcggtattta
     1561 tttttggagt ggctttttca ctcccttctt ttttgcagtc agaacgtggt gcgaagatta
     1621 atttagggct tgatttgcaa ggcgggcttt atatgctctt aggtgtagat aatgaagaag
     1681 ctgtaaaatc taaaataaaa tcaattgcat cttcattgag ttattctttt aataaagaaa
     1741 atattttaaa tgatggctta aatacccatg atgatatttt agaatttact ttgcttgata
     1801 atgcagatat tgcaaaagtt gaaaatttgc ttaaagaaat aaaaggaatt aatatacaaa
     1861 gtgaaaatat gcactataaa atttctttta cctcagaaga agtaaaaaat atagaaaatt
     1921 ttgcactttt gcaagcagtt gaaaccataa gaaataggct tgatcaattt ggtttagcag
     1981 agccaacagt tgctaaacaa ggtgatgata agattttggt tgaacttgca gggattaaaa
     2041 ccaaagaaga tgaactaaga gcaaaagagc gcatcacaaa agcagcacat ttgcaactta
     2101 tggaagttga tgattctaaa atgggtcaag cttctacaat gagcgatgct gaggctgcga
     2161 gttatggact gattttagtg tctgattcta gaaatccaaa tttaaaatat accttaaaaa
     2221 gcatacctat tttagatgga tctatgctta ctgatgctag agtagggatt agtgataaga
     2281 gtaattatcc tgtgattaat tttactttaa atgccgaggg ttctaaaaaa tttgctgatt
     2341 atacaggagc aaatgttgga aagcgtcttg ctattgtact tgataataaa gtgtattctg
     2401 ctccatctat caatgaacgc ataggcggag gtagtgggca aatcagtgga gcttttaccc
     2461 aagaagaagc gcgtgatgtg gcggtagctt taagaagtgg agctttgctt gcgcctgtaa
     2521 aattacttga acaaagaagt ataggaccat ctttaggtgc tgatagtatt aaaatgagta
     2581 tgatagcatt aatcggtgca tcggttttta ttgtaatatt tatgatgatg tattacggtg
     2641 tggcaggaat ttttgcaaat attgcaatgt tggttaatgt tttggtagta gtggctgtta
     2701 tggctatgtt tggagcaact ttaactttac cagggatggc aggacttgtt ttaactgtgg
     2761 gtatggcggt agatgcaaat gtgattatca atgagcgcat acgagaactc ttgcgagatg
     2821 gagtaaatat aagagctagt atagaacaag gttataaaaa tgctatgagt gcgattatag
     2881 attcaaatat cacttcttta gttacttcgg tagcacttta tgcctatgga acaggagcag
     2941 ttaaaggttt tgctgtgact ttgggaattg gtattgtcgt ttctatgatt acagctattt
     3001 taggaactca cggaatgttt gattatttta tgcaacgcat agaaaaaagt aataatacaa
     3061 gattttggtt tggttacagg agaagataat gcagtttttt agcgaaaaga aaatttatga
     3121 ttttatgaga atgcgttttg ctgctatttc tctttctttt attttgtttt ttggttctat
     3181 ttatttgctt tgggataggg gtttgcaata tggtattgat tttagcggag gaactttagt
     3241 tcagcttaaa tatgaaaatg cagctcctat aacacaaatc cgagaaattt tagaaaaaca
     3301 aggaactttt caaaatttat ctgtaactga atttggaagc aatgaagaag taaccatacg
     3361 ctttttagga agcaacgata atgtaagcaa tgatataggc gagcatataa gcactctttt
     3421 aaaggatacg ggaaaatttg aagtgcgtcg tgctgatgtg gtaggtccaa aagtaggtga
     3481 tgaacttaga aataaaggac ttatggctat agctgtatct ttgatagcaa ttttaattta
     3541 catagcgttg cgttttgagt ggcgttttgc tcttgcggct ataatcagtg aaattcatga
     3601 tgttgtgatt actttagggg caatttcttt atttaaaatt gatgttaatt tagatacttt
     3661 ggctgctgtt ttaactgtgc ttgggtactc tttgaatgat acaattatta tttttgatag
     3721 aatcagagaa ggcattaaaa ccagtaaaaa aaccgaactt gcacctatta tcaatgaaag
     3781 tgtttcagca actttatcaa gaacggtttt aacttcaggg ttaactttag caaccgttgt
     3841 gatactttat ttctttggcg gggaaatgat acaaggattt tctttggctt taattgtagg
     3901 tattatagcg ggaactttaa gctctatttt tgttgcaagt ccgacattat tatggtttaa
     3961 atttagtgtg cttgagttta gaaataaaga aattgaaaaa gcaaaaagaa aacaagataa
     4021 agaacgcaat cgtgcaatgt atgaaaaagg aacagtgtaa ggagaattta tggcttatga
     4081 agcaagttta atagaaaaaa aatggcaaaa aatttgggat gaaaatgaat attttgagcc
     4141 aaaagatgat ttaaatttgc ctaaaaaata tattttatcg atgtttcctt atcctagcgg
     4201 acgcattcac atggggcatg taagaaatta tactataggt gatgctttag caagatatta
     4261 tcgcaagata ggatttaatg ttttacatcc tataggtttt gatagctttg gtatgcctgc
     4321 tgaaaacgca gctattaaac ataaaattca tcctaagtca tggacttatg aaaatatagc
     4381 ttatatgaaa aaagaacttt tttctttagg tttttctttt tctaaaaaaa gaatgcttgc
     4441 tacttcagat ccactttata caaaatttga gcaagaattt tttattaaga tgtttgaaaa
     4501 aggtttgatt tacactaaag aagcaaatgt gaattggtgt gagcaagatc aaacggtttt
     4561 ggctaatgag caagttgaag acggaaaatg ttggcgttgt ggtcatgaag tggtgcagaa
     4621 aaaaatgcca ggttattatg taaaaatcac tgcttatgct gaggaacttt taaaagattt
     4681 agaagaatta aaagataaat ggcctaatca agttttaact atgcaagaaa attggattgg
     4741 taaaagcgaa ggtttggaat tttctttaaa tttagacgaa gaaagcaagc aaaaaactaa
     4801 agaaagttct ttagaagttt ttactacaag agcagataca atttatggag tttcgtatat
     4861 tgctttagct ccagaacata aaattgttca aaatttgctt tcgcaaaatt tattaaatca
     4921 agatgtatta aataaaatca aagctattca aaatcaaagc ccaagagaaa gacaaagttc
     4981 tgaaaaagaa ggttattttt taggaattta tgccattcat cctttaagcg gagaaaaaat
     5041 tcctttatgg gtggctaatt ttgtcttggc tgattatggt agtggagcgg ttatggctgt
     5101 tccagctcat gatgaaagag attttgaatt tgcaacaaaa tataatcttg ccatcaaaca
     5161 agttattcaa actcaagaaa atttacctta tacgcaaaaa tcaggaaaat taatccatag
     5221 tcaagaattt gataatcttg attgtaatga ggcaagatta aaaattattt ctcagtttga
     5281 agctaaaaat ataggaaaaa gggttgtaaa ttttaaaatt cgtgattggg gtgtttcgcg
     5341 tcaaagatat tggggtgcgc ctattcctat gattaaatgt caaagctgtg gtatagtacc
     5401 tcaaaaacta gaaaatttac ctattactct gcctgaagat gtgcaaatta caggagaggg
     5461 caatccactt gataaacatc caacttggaa aaattgtatt tgtcccaaat gtggcaaaga
     5521 ggctcaaaaa gaaagcgata ctttagatac tttttttgaa agttcttggt attttgcacg
     5581 ttttgcaagt gatgagaaaa cttggcagga aaaagcttta gatgaaaaaa gtgtgaagta
     5641 ttggatgagt gtggatcaat atataggtgg tattgaacat gcaatcttgc atttacttta
     5701 tgcgagattt ttccaaaaag ctttaagaga cttgggttat ttaacgcaaa atgaaccttt
     5761 tgatagactt ttaactcagg gtatggtgtt aaaagatggt gctaaaatgt caaaatcaaa
     5821 aggcaatgtt gtagatcctg atgagattat agaaaaatac ggtgctgata ccgcaagact
     5881 ttttatactt tttgctgcgc ctccggctaa agagcttgaa tggaatgatg atgcggttga
     5941 aggggcttat agatttattt gtaaactcta tgatagggcg caaaatgtta aaaaaggtga
     6001 gcttgtagaa ttaaaacaag aaaatttaaa taaagaagaa aaatatgcaa gattaaaggt
     6061 atatgaagct ttgaaaaaat cttttgaagt ttatcatcaa agttttgctt ttaatacttt
     6121 aattgcagct tgcatggaag ctttaaatgc tttagcgctt tgtaaaaatg aagctttgga
     6181 gcaagaggct ttttatatta ttttaaatat tttagagcct attattcctc atgtttgttt
     6241 tgagcttagc gaggagcttt ttaaatgtaa aaatttcaaa aaattagaac ttaaggaaga
     6301 ggtttttgta aaagatactt taaatttagc tgtaagtatt aatggtaaaa aaagggctga
     6361 atttgaaatt tcaagtagtg cgagtaaaga agaaatttta gcttttgcaa aagaaaatac
     6421 tgctaaatgg cttgaaggta agagtatagt taaagaaatt tatgtggaag gaaagctagt
     6481 taatctagtg attaaatgaa aaagatttta attttttgta taggtttatt tttaggtgct
     6541 tgtggatatg ttcctacatc aaaaatcgct aataatattt tcgatgagaa ggtttatgtt
     6601 aatgttgaat taagtcaaca agatccaaaa aatagtatct atgttgccga tactttaaaa
     6661 gaaatggtaa tttcaaaatt agggcgtaaa cttgctttaa aacatgaagc tgatgatgta
     6721 atcaatgtta aaatgaataa tttagaattt attcctttag cttatgataa aaatggctat
     6781 gttattagtt ataaagctaa attaaattta gattttaatg ttgtctttaa agatggttca
     6841 agtcaggctt ttagtacaag tggaagttat aattttgaaa tttctccaaa tagtattatt
     6901 agtgattctg caaggtatga ggctattcga gcagcttcaa gcgaggcatt tgatgagttt
     6961 atttccgtaa ttgctattaa agggcaaaaa cgtgattcca aatactaatg aaatagcaaa
     7021 gcaaacttta attacattaa aagaaagaaa actaaaacca actcctgaaa attatacgga
     7081 aatttttgaa gaattatctt taaaatatgg tattacaagt tcaaataagg ctaaacttga
     7141 taaatacaaa accttgcttt taccgattta tcaacaagaa ttaaattcta aaactataag
     7201 aagtttagaa gaactaatta gttttttaat ttctgtttta aatagacaaa gcggaaaaca
     7261 atttagtgaa ttttttgatt ttttatatac catatctaaa actttgcaaa taagtaagga
     7321 taaaaagata agagatttgg ctaaggtgac ttcgattaga atttctaaaa ctatggatag
     7381 tgaaagtatt tacttgctta ctaaaaaatg gaaagagctt gaaagaaatt acgatgaaaa
     7441 tgacttagaa gaacaagctc gtaaatatgg cattagtaaa tatgatgatt atgatagcgt
     7501 gattaaaaaa ctcttagtta aacttgaaga gcgtagttat gagcacttta gtgaattatt
     7561 atgcttgggt ttaaatcctt cattggtgga agatttaaaa attcaaggtt ttatacaaaa
     7621 tttaacacaa aagccttttg tgataggtga agaaaatttt aaaaatgaac taatggaatt
     7681 tataaatcat cgtataatgg ttgataatat gtatgtccaa aaaaatttaa attttttt
//
LOCUS       DAEDTT010000075         7474 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.075, whole genome shotgun sequence.
ACCESSION   DAEDTT010000075 DAEDTT010000000
VERSION     DAEDTT010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7474
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.075"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..337
                     /locus_tag="KLC54_001258"
     CDS             <1..337
                     /locus_tag="KLC54_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177629.1"
                     /translation="KSQKIIFDFNKIDDFKIYFIDDKFEITPFGSSSQAFIVSNNQNT
                     FEFWKEKFKNIKDFKIASKNSLFCDFSYNQLSDLRKLKNFKYCLILENYDIFEQEFEN
                     KENQTPSLF"
     gene            complement(329..781)
                     /locus_tag="KLC54_001259"
     CDS             complement(329..781)
                     /locus_tag="KLC54_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HBD9177630.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLVK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMKIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIASNGIGGYNGGLEIKRFLLENEGVNLK"
     gene            836..3382
                     /locus_tag="KLC54_001260"
     CDS             836..3382
                     /locus_tag="KLC54_001260"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HBD9177631.1"
                     /translation="MSFMQEYNKLVEERAALGIPPLPLNANQTKELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLNSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAREVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQAGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVINLEMGDEFEIHPYEGKIIKNGSTIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCAKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     MTLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNVPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEAGYENK
                     ATLVRRAEKMREWLKNPTLLRADKDAKYAYIIDINLNDIKEPILACPNDPDDVATLSE
                     ILADNKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSDEHKANIYRYLNFNEIENFKLEN"
     gene            3442..4680
                     /locus_tag="KLC54_001261"
     CDS             3442..4680
                     /locus_tag="KLC54_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HBD9177632.1"
                     /translation="MKLLFTSFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVAYLPKLQQFDFLLLKIAIDPITYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWQEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQD
                     DLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALENYENTNFLIQNGANVN
                     QANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFIT
                     FCALEHTSKNVLMHAAAYGNVEILKLLISKGANLNAVDDLGFNALDFALAAGKKENAD
                     YLKSLGLKANENLFYGGSLE"
     gene            4677..5426
                     /locus_tag="KLC54_001262"
     CDS             4677..5426
                     /locus_tag="KLC54_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HBD9177633.1"
                     /translation="MKTAFITGASSGFGRACVEAFIQKGYKVIALARRKERLEELKNS
                     HKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKVVIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            5423..7156
                     /locus_tag="KLC54_001263"
     CDS             5423..7156
                     /locus_tag="KLC54_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HBD9177634.1"
                     /translation="MNKFLVLLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFAGVLSGTFLLSLSANIFKAQHLAFVNFYNTAVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISDISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGTLDTAELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASANPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            7153..>7474
                     /locus_tag="KLC54_001264"
     CDS             7153..>7474
                     /locus_tag="KLC54_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HBD9177635.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTR
                     AELSFYHENDTLFYAMFDPKSKKKYIIEYLDFADEKICAFMPKLLEYLRQDNKLKEKL
                     FGVEF"
BASE COUNT         2580 a         1115 c         1305 g         2474 t
ORIGIN      
        1 aaaaagtcaa aaaataatat ttgattttaa taagattgat gattttaaaa tttattttat
       61 tgatgataaa tttgaaatca ctccttttgg ttcaagctct caagcgttta ttgtaagcaa
      121 caaccaaaat acctttgaat tctggaaaga aaaatttaaa aacataaaag actttaaaat
      181 tgcttctaaa aattctttat tttgtgattt ttcctataat cagctttcag atttaagaaa
      241 attaaaaaat tttaaatatt gtttaattct tgaaaattat gatatttttg aacaagaatt
      301 tgaaaacaaa gaaaatcaaa ccccaagctt attttaaatt cactccttca ttttcaagca
      361 aaaatctttt tatttcaagc cctccattat atcctcctat gccattactt gcaataactc
      421 tatgacaagg tataaaaata ggaatctgat ttttagaatt tgcatttccg acagctctaa
      481 aagcttttgg atgattaatt ttttctgcta tatctttata agtagctatt ttaccataag
      541 gaattttcat taaagcctta taaacctttg attcaaaatc tgtaccttgt atcaaaacag
      601 gaatgctaaa ttttctaagc ttatgagtaa aatataaatc aagttcatat tttactaagt
      661 caagcaaact acaatttttt tctgatcttt tattatcaca aaaatcgact ctagttaaaa
      721 attttccatc actatgtaaa gataggtaac ataaaggcat tttataataa actttaaaca
      781 ttttttatcc ttcaaagagc tacaattata ataaaaaata tttaaggagt agaaaatgtc
      841 ttttatgcaa gaatacaata aacttgttga agaaagagcc gctttgggta taccacccct
      901 tcctttaaat gcaaatcaaa ctaaagaact ttgtaaacta cttgaaaatg aaaataatga
      961 agagcttgca aatcttttag aaaatagagt aaatcctggt gttgatgatg cagctttagt
     1021 aaaatgtgaa tttttaaatt ctatacttaa aggcaaaatc agtgctccaa atatagacaa
     1081 aaaaagagcc ttaagaatgc ttggaactat gttaggcgga tataatgtta aagttttaat
     1141 cgatgcttta aaagatgaaa acatagccaa agatgctgca gaagtgttga aaaatattat
     1201 ttttgttcat gataattttc ataccatagc tgaacttagc aaaaacaatc cacacgctag
     1261 ggaagtttta caaagctggg caaatgcgga ctggtttaac aaaaaagaaa aattacctca
     1321 agtgattaaa tgtatagttt tcaaagtagc aggggaaaca aataccgatg atctaagccc
     1381 tgcaggagat gcttttacaa gaagcgatat tcctttgcat gcaaatgcca tgctaaaggt
     1441 aagacaagca ggatccttag aaaaaatcaa agagcttaaa aaaagcggtc gcgaagtagt
     1501 ttatgtaggt gatgttgtag gaacaggttc aagtagaaaa tcagcaataa attctataca
     1561 atggcactta ggaaaagaaa tagaaggtgt accaaacaag cacagcggtg gtatagtaat
     1621 gggttcaacc atagcaccga ttttctttaa cactgctcaa gatagtgggg ctttacctat
     1681 catctgtgat gtaataaact tagaaatggg cgatgagttt gaaattcatc cttatgaggg
     1741 aaaaatcata aaaaatggct ctacaattgc agaatttaca ctcagtccaa acactctctt
     1801 agatgaagtt agagcaggag gaagaatccc acttatcata ggtcgtgggc tttgtgctaa
     1861 ggctagagaa tttttaggta tggaaagtga aaatatcttt accaaacctg aacaacctaa
     1921 atcttcaagc ggtggttata ccttggctca aaaaatgcta ggtcgtgcct gtggagttga
     1981 aggtgtgcgt ccaggtatgt atatagaacc tatgacttta actgtaggct ctcaagatac
     2041 tacaggtcct atgactagag atgaaattaa agagcttgca agcctaggtt ttaatgcaga
     2101 ctttgtgatg caaagctttt gccatacagc tgcttatcca aaagtaagcg attcaaattt
     2161 acataaaacc ttgcccaatt tcatgacaag tcgtggtggg gtgagtttaa aaccaggtga
     2221 tggggttatt cactcttggc ttaatcgttt tgtattgcca gataccgtag gaacgggcgg
     2281 ggattctcac acacgctttc ctataggaat ttctttccct gcaggaagcg gacttgtagc
     2341 ttttgctgcg gttactggct ctatgccttt aaatgtaccc gaaagtgttt tagtacgttt
     2401 tagcggagaa ttgcaagctg gagttacctt aagagatttg gttaatgcta taccttatta
     2461 tgcaatcaaa caaggacaac ttactgttga aaagaaaaat aagaaaaata tttttgcagg
     2521 aaaaatttta gaaatagaag gcttgccaaa cttaaaagtc gaacaagctt ttgaactcag
     2581 cgatgcaagc gctgaaagat ctgccgctgc ttgtagtgtg gatttaagca tagaaagtgt
     2641 aagcgaatat atcaaatcca atatttcttt aattgaagct atgatagaag caggatatga
     2701 gaataaagct acccttgtta gaagggctga aaaaatgaga gaatggctta aaaaccctac
     2761 tcttttaaga gcagataaag atgcaaaata cgcttatatt atagatatta atcttaatga
     2821 cattaaagag ccaatcctag cttgtccaaa tgaccctgat gatgtggcaa ccttaagcga
     2881 aattttagcc gataataagc gtccaaaaaa tatagatgaa gtttttgtag gttcttgtat
     2941 gacaaacata ggacattata gagctttggg agaaatttta aaagataaag gcatacttaa
     3001 aaccagactt tgggtagtgc ctccaacaaa aatggataaa gcacaactta ctaatgaagg
     3061 ttattacagc atctttggtg cagcaggtgc tagaatagaa gttcctggtt gttctttgtg
     3121 tatgggtaat caagctagag taaatgatgg agctgtagtt ttctcaactt ctacaagaaa
     3181 ttttgacaac cgtatgggaa tgggtgctaa agtatattta ggcagtgcag aacttgcagc
     3241 agtttgtgcg attttgggta aaattccaag caaggaagaa tacttacaaa ttgttagcga
     3301 aaaactaagt gatgagcata aggcaaatat ctatagatat ttaaatttta atgagattga
     3361 aaatttcaaa cttgaaaatt aattcaaatt taatacttat ttggattaaa taacaaaatt
     3421 aaaattttca aaggaaaaat attgaagtta ttattcactt ccttttgttg ttttgcaagt
     3481 ttaatggcta gcgatgccat taactgcgac aacattaaaa ataataaaac attgctaaat
     3541 gaaagttcaa atttagatta tttaaatata gcttcaagct gtaaagaatc tttaaaaaat
     3601 caagatttta caaaaaaact ctatgcgatt tccaatgaaa ttcgcggaag caatagctct
     3661 tgtaatggtg tggcttattt gcccaaatta caacaatttg attttttatt attaaaaata
     3721 gccatcgacc ccatcactta tcaaaaaact ttagatacac ctgagaattt agaaaaaaaa
     3781 tatgatattt taaaatctta ctttagatat tgggcatatc aaagtatagg aaattttaga
     3841 ctttacaaag ctttttggca agaatacaat aacgctatag aacctttaga aaagtatttt
     3901 gaaagtaatt ttaattttga caaaggtagc aatatttact atactagcaa tgccttaaac
     3961 gaatttttaa attgggctgt tggagaaaca aaaatttaca aagacattag tcctttagca
     4021 aaaatcatgt caaataaaaa ttattcggta tcttatatac aagattttat tttttcaaat
     4081 aatccaagtc aagatgatct tactatagcc ttacaagcag cgcttctaaa tcaaagagaa
     4141 aaagaaattt tagaactttt gattcgtttt ggcgctagga ttgacgaagg ttatgaaagt
     4201 gctatttttt acgcattgga aaattatgaa aatacaaatt ttttaatcca aaatggagcg
     4261 aatgttaatc aagccaatgc ctttggtaaa actccgcttt tttatgccat agagtttaat
     4321 cgtcttgata tcataaaact acttcttgat aatggagcaa atgttaatca aaaatatatt
     4381 aataacaatg aaaaattagc attaagtgcg aacataggtt caaatacgcc ttattttatt
     4441 acattttgtg ctctagagca cacttcaaaa aatgttttaa tgcatgctgc agcttatgga
     4501 aatgttgaaa ttttaaaact tcttatctca aaaggagcaa atcttaacgc tgttgatgat
     4561 cttggtttta atgcacttga ctttgcgcta gcagcaggca aaaaagaaaa tgctgattat
     4621 ctaaaaagct tgggtttaaa agcaaatgaa aatctatttt acggaggtag tttagaatga
     4681 aaaccgcatt tattacagga gctagttcag gttttggtag agcttgcgtt gaagctttta
     4741 tacaaaaagg ctacaaagta atcgcccttg ctagacgcaa agagcgtcta gaagagttaa
     4801 aaaattctca caaagataag atttacacgc tttgcataga tgtaagaaat caaaaagaaa
     4861 tctttgaggc tattgaaaat ttacccaaag aatttcaaga aattgatgtg ctttttaata
     4921 atgcaggctt agctttaggg gtagatgaat ttgataaatt aaaccttgaa gatattaaca
     4981 ctatggtaga tacaaacatc aaaggatttt tatatgttgc aaaagttgtt attcctatac
     5041 ttcgtaaaca aaaaaatgct tatattttta acttaggttc ggttgcagga cgcaatcctt
     5101 attttggagg caatgtgtat tgtggaacca aagcctttgt aggacaattt tcattggcct
     5161 taagaaatga tcttagagga agcaatatca aagtaacaaa cattgctcca ggactttgca
     5221 aaactgaatt tagtgaagtg cgttttaaag gagatatcca aaaagctgat gcagtgtatg
     5281 aaaatacgca atttatcagt gctaatgata ttgccaaagt ggtaatgtct attattaacc
     5341 taccaagcca tattaatgtt aatgaaatcg agcttatgcc ggtaacacaa acttggaatg
     5401 gattttatat agaaagagat gaatgaataa atttttagtt ttattgtttt tacctttagt
     5461 tgcatttgca aactcctcag aagcagctgc aaatgctaat ttatttggag cttttacgct
     5521 tataccgcct ttagttgcta ttgctttagc ctttatcaca aaagatgtta ttttgtcact
     5581 ctttgctgga gttttaagcg gaacttttct acttagcctt tctgcaaata tttttaaagc
     5641 acaacattta gcttttgtaa atttttataa taccgcagta gaatcttttt caaagattat
     5701 ttcttatatc ttaggttcaa cttcagatcc agtaaatgca ggaatcattt tacaaattct
     5761 ttgtataggt ggtcttgtgg cacttatcac aaaaatgggt ggtgcaaaag ctgtagcatt
     5821 aaaatttgcc aaaagagcca aatcagctgt atcagctcaa gttaacactt ggtttttagg
     5881 gcttttaata ttttttgatg attatgctaa tttactgatc gtaggtccaa ttatgcgtcc
     5941 tttggcggat aaatttaaaa tttctcgtga aaaatttgcc tttattatcg actctaccgc
     6001 agctcctgtg gcaggaatag ctgtaatttc tacttggata ggcttagaag tttctttaat
     6061 taaaaccgct tatgaacaca taggcattag cgatattagt gcttttggaa tttttgtcga
     6121 aaccatacct tatcgttttt ataatatctt catgcttttt tttgtagtca tgactgcaat
     6181 catgggacgt gagtttggtt ctatgtacaa ggctgaagtg cgtgcaagaa ccacaggaca
     6241 aattgcacct ctacctaaat caggcacact agatactgct gaattagagg atcagttttt
     6301 agcgccaaaa gaaggtatta aaattcgtgc ttttgatgct attgttccta tttttacttt
     6361 aatcatttta gctatattag gattttattt taatggactt agcactttag aaggcgaaga
     6421 acttgcaaaa gcaagtgcca atcctttgtc ttttgaaact tttagggctg cttttggaaa
     6481 tgctgattct tctgtggtgt tattccaagc tgctttgttt gctgctattg tagcgatttt
     6541 tatcggggtg cgtcgtaaaa ttttcaatct taaagaagcg gtagaaactt ggatatatgg
     6601 ctggaaaacc atgattttta ccatagtatt gcttttattt gcttggtcgc tttcaagtat
     6661 agtaaaagat ctaggaactt ctttatttat cactagtttg cttgcagata aattgcctga
     6721 gtttattttg cctgctacta tttttgcttt tgcttcagcc atttcttttg ccataggaac
     6781 aagctatgga actatgggga ttttaatgcc tttggctgtg cctttagctc atgaaatcgc
     6841 caaaatcaat ggtatggatg caaatgctat gcatcattat atggttatta atataagctg
     6901 cgttttaaca ggtgcgattt ttggaaacca ttgctcacca atttcagata atgtaatcct
     6961 ttcatctatg agcgcaaaat gcgatcatat ggagcatgta agaacacaaa ttccttatgc
     7021 tttatttatc tgtggtattt ctttaatcgc tggatatatt cctgtatctt taggacttag
     7081 cgtttggttt gtcttgcctt taaatttcat acttattgcg cttttactaa gactcatcgg
     7141 aaagaaagtt ccatgagtct tgaaaatttt ggaaattttc tcactttaga tgaaaaacac
     7201 tctttcataa aaaaatattt taaagaattt tatacaaagg attttaaact ttttgcctca
     7261 aaagataaac attatcgtac aagagctgaa ctttcatttt atcatgaaaa tgatacgctt
     7321 ttttatgcaa tgtttgatcc aaaaagcaaa aaaaagtaca ttatagaata tttagatttt
     7381 gctgatgaaa aaatttgtgc ttttatgcca aaacttctag aatacttgcg tcaagataat
     7441 aaattaaaag aaaaactttt tggtgtagaa tttt
//
LOCUS       DAEDTT010000076         7464 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.076, whole genome shotgun sequence.
ACCESSION   DAEDTT010000076 DAEDTT010000000
VERSION     DAEDTT010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7464
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.076"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..614)
                     /locus_tag="KLC54_001265"
     CDS             complement(<1..614)
                     /locus_tag="KLC54_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HBD9177636.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQIDALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILSANKNPSFENEDQIYIK
                     LKDKNFTLNHIFSKENHYLIATLSNPFFIDIKKDLENNFKNLEE"
     gene            complement(614..2422)
                     /gene="typA"
                     /locus_tag="KLC54_001266"
     CDS             complement(614..2422)
                     /gene="typA"
                     /locus_tag="KLC54_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HBD9177637.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            2557..2880
                     /locus_tag="KLC54_001267"
     CDS             2557..2880
                     /locus_tag="KLC54_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177638.1"
                     /translation="MSKPLNEEIFIEFKSDLAERKNEVLLQVLELLETFRSDKNEKMA
                     RISSELTEILENEENLEKILNAKNLEELLNILIALNEDKMIKVYEDSYLKEKFPNVMV
                     DKFLK"
     gene            2898..4718
                     /locus_tag="KLC54_001268"
     CDS             2898..4718
                     /locus_tag="KLC54_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HBD9177639.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSNTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSIDETNEFLPDHMKISQKEVVSEAMNRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSTQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDTKNT
                     LKNIKNDEFAKNLTEELNIKDKKNQDSLNKDNNLKDLNKESKDLNKDFNKELNKNQEK
                     NNLNQENIQDQNKNLKNNDQNLNLDKNLNKEIVKDTQNLVSNLTQKDFNLNKEPKNNN
                     KENKDIKQNFFDQKLNFENLNKTQVVQNKENNANFNNNTTNKETFTQEQTKTHSENVD
                     KNSLDELNSLVKDLNKVTQNNARNITPKETLQYFSQDLKEAVDQYKAPITKLSITLNP
                     NNLGEVEVTLIQRGNNLHINFNSNANAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQG
                     KREQNQNQGKNRSGYGFKDALDGKNESEKVNLELVLAKYF"
     gene            4772..5656
                     /locus_tag="KLC54_001269"
     CDS             4772..5656
                     /locus_tag="KLC54_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HBD9177640.1"
                     /translation="MISSSDWNLNTAATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            5660..7297
                     /locus_tag="KLC54_001270"
     CDS             5660..7297
                     /locus_tag="KLC54_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HBD9177641.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKEGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(7301..>7464)
                     /locus_tag="KLC54_001271"
     CDS             complement(7301..>7464)
                     /locus_tag="KLC54_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177642.1"
                     /translation="LELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKII
                     FEKLEKDNS"
BASE COUNT         2685 a         1140 c         1225 g         2414 t
ORIGIN      
        1 ttttcttcta aatttttgaa attgttttct aaatcttttt ttatatctat aaagaaagga
       61 ttgcttaaag tagcgataag ataatgattt tctttagaaa agatatgatt taaagtgaaa
      121 tttttatctt taagtttgat ataaatttgg tcttcgtttt caaagctagg atttttgttt
      181 gcacttaaaa tttcgagtaa aattccgcaa aaaaagcgtt tgttttcgtc caaaaactga
      241 atatcataaa ttttaaaatc cttaaattca aagcagtttt gacttttaaa ttctttcaaa
      301 tcctttgtaa gccctagttt taaaaagtct ttttggctta aactttgctt tttaaatttc
      361 gccccaaaac gacgcaaaaa caaatttaaa gcatcaattt gtaattcttt ttgtgcgagt
      421 tttagttttt tggctgtaaa acgaaagaaa aaaacaccta caaaaacagc taaaatcact
      481 gcgattaagg catctcttat aaaaacaaag gctaaaaaac ctacaagtaa ggcttcgata
      541 atgcttagga attttaagat tcctaagcgt ttaagtatat aaagtctatt attttctaag
      601 ctttttaaat ccattaagat tttgcttttt ccattctttt tctttgagtt ggatcaagat
      661 agcgtttgcg aacacgcaca tttacaggcg taacttctac aagttcatct tcttctatcc
      721 actctaaagc tctttcaagg cttaattttc taggtggcac aagcttgatt gcatcatcgc
      781 ttccacttgc tcttacattg gtaagattct ttcctttgat aggattaaca tctaaatcat
      841 ttggacgaga gtgctcacct ataatcatac cggtataaac tttagtttga ggctctatga
      901 aaagcactcc acgctcttga aggttaaaca aagaataccc caaagccacg ccattttcca
      961 tagaaattaa agctccatta ttacgctttt caaccgcacc gctaaaagga cggaattcta
     1021 aaaagctatg attcatcaca ccttcgcctt tagtatcggt taaaaactgg cttctaaaac
     1081 ctataagtcc gcgtgctgga atttcaaact caagtcttgt ttgtccatcg cctgttggtg
     1141 ccatggtttt catttcagct tttcttttgc caagtttttc tattaccgca ccgctaaatt
     1201 cttcaggtac atcgataact aaatgttcaa aaggttctgt tttaactcca tcttcaactt
     1261 ttacgataac ttcaggtctt cccatgcaaa actcaaaacc ttcacgacgc atattttcag
     1321 ctaaaatagt gatttgaagt tcgcccctac cgcttacttt aaatttacct tcgcctgtgc
     1381 tttcgtattt catagcaata ttagttttca tttcagcttc taaacgttca gcgattttat
     1441 ttgaagttac atgcttacct tctgttcctg ctaaaggacc atcatttaca gaaaatacta
     1501 tacttaaagt tggctcttca atgtgcaagg gatcaagtgg cataggatta tttggatcta
     1561 ccacgctatc tcctacatct aaagcttcaa aacctgctat agctacgata tctccacttc
     1621 ctgcttcttc gatgtccatt ttttctaagc ccataaagcc aatgagtttt gaaattctac
     1681 catttacctt ggtgccatca gcttttgcaa gcattacgct ttggtttttc ttcacaaccc
     1741 cattgaaaat tctagcaatg cctattttac ctacgaaatt atcatacccc aaagtgaaaa
     1801 cttgaagttg taaaggattg tcatttgtgc cacttggtgc tggaacgcgt tcaagtatgg
     1861 ttttaaaaag tggttccata ttatcacttt catcgtttag atcaagctta gcataaccat
     1921 tttttgctgc agcataaact atggcaaagt cgagttgctc atcgtttgca tctagggcta
     1981 caaaaagatc aaaaatttca ttgatcactc tttcaggatc ggcagctggt ttgtcgattt
     2041 tgttgattac aactataggt ttaagcccta aagataaagc ttttttaacc acgaatttag
     2101 tttgtggcat aacgccttct tgagcatcta ctaaaagcaa aactccatca atcattttta
     2161 aaacgcgttc tacttctccg ccaaaatcag catgccctgg agtatctatg atgttgattt
     2221 ttgtaccttt gtaattgatc gctgtgtttt ttgaaagtat ggtaataccg cgttcttttt
     2281 ctatatcgtt gctatccata acgcgttctg aaatttgttc tctttcgcta aaggtgcctg
     2341 attgttttaa caattcatct accatagtgg ttttaccatg gtcaacgtga gctataactg
     2401 ctatatttct aatgttttcc aaattttctt ctccaaagct aaatttttaa aagcttagat
     2461 tatacaaaaa tttaacttaa actacaaagc atcaaaactt ggaacacttc ttgctttaaa
     2521 gacttgtgaa attaaaattt taaaaaggaa gttaaaatgt caaaaccatt aaatgaagag
     2581 atttttattg aatttaaaag cgatttagct gagagaaaaa atgaagtttt acttcaagtt
     2641 ttagaacttt tagaaacttt tagatcagat aaaaatgaaa aaatggcaag aatttcaagt
     2701 gagcttacag aaattttaga aaatgaagaa aatttagaaa aaattttaaa tgctaaaaat
     2761 ttagaagagc ttttaaatat tttaattgct ttaaatgaag ataagatgat taaagtatat
     2821 gaagattctt atttgaaaga aaaatttcct aatgtaatgg tagataaatt tttaaaataa
     2881 ttttttttga aggaaaagtg atgtcaaatt tagctccgca aaatgatgtt ttaaatctta
     2941 cgccgagtaa aacttctaat actagtagtt cctttagtaa aacgagtaaa aataaagaac
     3001 atgaaagtag cgatagtaaa aattcaactc aagatgatac ggaaagtttt ttaaattctt
     3061 tgcttaattc tattgatgaa accaatgaat ttttacctga tcatatgaag atcagtcaaa
     3121 aagaagttgt tagtgaagcg atgaacagac ttcaaaaagg agcttttgat gagagtgata
     3181 agataagcat tttcgaatct gcttctttta tgcaaattct ttctttgttg gataagctaa
     3241 aaacagatac agcagatgtt aaactagcaa atctttctac tcaactttca agtcttatta
     3301 aaacagaggc taattttaat gctttaaaag gtgcatcaaa tcttagtgag cttttggaca
     3361 tagctaaaga tctgggctta aatgtaaaaa atattaaagt agatcgtctt cttgatctta
     3421 aagcaacttt tccaaattta gataaggctg atttttttaa gggtgctgtg gataatgttt
     3481 ttaaagaaat catcaataat aaaatttcca atgtgagtaa aaatttaaat cacaatttag
     3541 aaaatacaac tcatactaca agcactcatt ctacgcaaaa aacaaattct aaagatagcg
     3601 gttctttgct ttctcaaact ttaaaaaatt tagattccat actttcatcc aaagaaagca
     3661 aacacgaaaa aaacgataaa gttaaatcaa aaatagaaga agataccaca gatactaaaa
     3721 atactttaaa aaatatcaaa aatgatgagt ttgcaaaaaa tttaacagaa gagttaaata
     3781 taaaagataa aaaaaaccaa gatagtttaa ataaagataa caatcttaaa gatttaaata
     3841 aagaaagcaa agacttaaac aaagatttta ataaagagtt aaataaaaat caagaaaaaa
     3901 acaatttaaa tcaagaaaat atacaagatc aaaataaaaa tttaaagaac aatgatcaaa
     3961 atttaaatct tgataaaaat ttaaataaag aaattgtcaa agatactcag aatttagttt
     4021 ccaatttaac acaaaaagat tttaatctaa ataaagagcc taaaaacaac aacaaagaaa
     4081 ataaagatat aaaacaaaat ttctttgatc aaaaattaaa ttttgaaaat ttaaataaaa
     4141 ctcaagtagt tcaaaacaaa gagaataatg caaattttaa taataatact actaataaag
     4201 aaacttttac tcaagagcaa acaaaaacgc acagtgaaaa tgtagataaa aatagcttag
     4261 atgagttaaa ttctttagtt aaagatttaa ataaagtaac acaaaacaat gctcgcaata
     4321 tcactcctaa agaaactttg cagtattttt cacaagattt aaaagaggct gtggatcaat
     4381 acaaagcgcc tattactaaa cttagtatca ctctaaatcc taataatctt ggagaagtgg
     4441 aggtaacttt gatacaaaga ggtaataacc ttcatatcaa tttcaactcc aatgccaatg
     4501 caatgaattt gtttatccaa aatcaagccg agtttaaaaa ttctcttgta aatatgggat
     4561 ttactggact tgaaatgaat tttagtgatc aaggcaaaag agagcaaaat caaaatcaag
     4621 gaaaaaatcg tagtggatat ggttttaaag atgctttaga tggaaaaaat gaaagtgaaa
     4681 aagtcaatct agagcttgtt ttagcgaagt atttctaagt tggaacactt attgcttaaa
     4741 taataaaaaa ctaaataaaa aggagtttat aatgatatca tcatcggatt ggaatttaaa
     4801 tactgctgct acaacttcag gtactacttc ttcaggaagt actagtggaa caactagaac
     4861 agattcaagc agtagctcag gaatagtgag caatccaaat gctaccttag ataaggatgc
     4921 gtttttaaaa cttcttttga tagagcttca acatcaagat ccaacagatc ctatggatag
     4981 cgataaaatg cttactcaaa cttcgcagct tagcgcactt gaaatgcagc aaaataccaa
     5041 tacaactatg caaaaaatgg ttgaaactat gcaaaagctt tctgattctt ttagtacaag
     5101 tatgagtact tcagctttag gggctattgg taaaatggca actgtttcag ataataaaat
     5161 caaacttaca ggtgcagatg agcttatcgc tcttaaaatg tatttgcctg aagattctga
     5221 tgaaaacggt gttacgctag aaatttatga tagcaataat aaacttgttt tcagtgaaaa
     5281 aagcgatgct aaatctattt ctcaaggttt atttactatg gagtggccag gaagaaataa
     5341 cgatggggtt tatgcaggtg atggtgagta cactgttaaa atggtttata ataataaaaa
     5401 tggtgaaaaa atcactgcaa attacggaac ttatcctatc gaaggtgttg tttttaaaga
     5461 tggtgttgcc tatgcaaaaa tggctggaca agaagttcct tttgatgcaa tacaagaaat
     5521 aacagattat aagcttggtt catcttcatc tactggagga agcggttcaa gtggagactc
     5581 aagtggtggt tcaagcgatg gagattcttc tgggtctgga tctacagaag atggcgacaa
     5641 agaggaaaag gcataagcca tgatgaattc attttataat gggatttctg gagtaaaaag
     5701 caatagcttt ggtattgata tcactgctaa taacatagca aatgtcaata ccacgggctt
     5761 taaatactct gatgctcaat ttaaagatat tttttatact accataacaa cccaatcaac
     5821 caaccctgct caaggtggtt atggtagcgg tgcagcatct tctcaagttg ttttcgaaca
     5881 gggttctcct gttgcaagtg atggcgaatt tgatgtggct ttgcaaggaa aaggattttt
     5941 tggggtttta ggggctgatg gcaatgctta ctatactaga aatggatcat ttagaagaga
     6001 tgccaatgga tatttggtag attcttatgg aaattttgtt ttaggaacaa tgaatcctgc
     6061 ttttactggt attaactata gcgatagagt tgctgggctt atgggggatt atcttaacac
     6121 aggaactccg gtaaataatg gttttactgt aaattcaaat aattctttca gtataggcac
     6181 aaccgcttct caaggggcta ttaaagtacc tgtgaatatg tatttacctc ctcaagtaac
     6241 tcaaaatgta aaatggagtg gaagtttaaa tactaacaca acaacagaag tagttaaagt
     6301 agatcttgat cctagtaaat ttaacattac aaaaactgaa gatggaaaat atgtagttag
     6361 tggtagtgtt agcaaagaag atgtgtttag tgctaaagcg ggtgatagga ttattttaaa
     6421 tttcactgat gataatggcg taaaaacaag ctttgaagcg actttagatg aaaatctaaa
     6481 ttttaaaagt aacgagcttg atttaaaagg attggatgaa aatagcatca agcttgatac
     6541 agctcaaatt tcaacagagc aacaaaaagc caataaagat attttagaat cccctattta
     6601 taatgcagat ggaagtaaaa gcactttaag ggttacactt gaaagagttt taccgcaaga
     6661 aggcgataat atacaatata aagctattgc acaaatttat gattctaatg gcaatgccgt
     6721 aggcaatccg actgaaggaa atatggtttt tgataaaaat ggtgctttgc ttcaaaacaa
     6781 tattacaagc attgcaaatc caaatggtgg aacaattaat attgatttag gttctcctta
     6841 tgatgctaac aagcctggtt cgggttatag tgggatttat attaaagaag gcgtcgaaaa
     6901 aaatgtagtt acacaacaag atggtgtagc tgaagggttt tttgaacaat ataatatatc
     6961 cgatgatgga agtattgttg cgcaatttag caatggtaaa aatgccatag ttggaaagct
     7021 tgctttatat aattttatca atgagcaagg attagttgct atgggagata atatttttgc
     7081 agcaacggca aatagcggtg atgcaagttt tattatgaaa gatggtcaag ttgttaatac
     7141 agctaaattt aaaggcggat tcttagaaca atcaaatgtt gatttaagcg cagagctttc
     7201 aaaccttatc gtaactcaaa aagcctttga tgcaagctca aaaagtatca ctacaagtga
     7261 tcagatgata caaaaagcca ttaatatgaa aagataattc ttaggaatta tctttttcta
     7321 atttttcaaa aataatttta atttcttcta tgtcgctttc gctataatta tggcttgatt
     7381 taatataact tacttgctgt cctttttcaa gatataaaac cttttcatag tcttttaaat
     7441 ttatatgatg ttttagttca aggt
//
LOCUS       DAEDTT010000077         7393 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.077, whole genome shotgun sequence.
ACCESSION   DAEDTT010000077 DAEDTT010000000
VERSION     DAEDTT010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7393)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7393)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7393
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.077"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..985
                     /locus_tag="KLC54_001272"
     CDS             <1..985
                     /locus_tag="KLC54_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HBD9177643.1"
                     /translation="LLSLRIITHNINFKDYLSKSFYVPSYDFEKLKEKEYNPIISYFL
                     NQHTNEKIKEFYGALFFALPISLELRNDVNYYGIAHLIAISGYHIGLLFSLIFFILAP
                     IYSFFQKIYFPYRNLRLDLSILIFTLLLAYACLIGFIPSFVRSLIMAFWVFYLLCKNI
                     KIINFFTLFCSILLCISLYPRLLFSIGFLFSILGVFYIFLYMHHFANKFNNLINIILL
                     NIWTFFAMVLPVLYFFPLISYQQILGIILSGIFVIFYPLVLFLHLINYGDLLNFILDE
                     FFKFKIYGTNIYIPFWIFISYLIASLISVRFKYLAFLCIFANFIPFIMIVI"
     gene            complement(929..1735)
                     /locus_tag="KLC54_001273"
     CDS             complement(929..1735)
                     /locus_tag="KLC54_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HBD9177644.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGAIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNYNHNEGNKIRKNTKKS"
     gene            complement(1739..3121)
                     /locus_tag="KLC54_001274"
     CDS             complement(1739..3121)
                     /locus_tag="KLC54_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HBD9177645.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLSSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVNPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVREAIDEDLRNLEHYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPALLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            complement(3124..3849)
                     /locus_tag="KLC54_001275"
     CDS             complement(3124..3849)
                     /locus_tag="KLC54_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HBD9177646.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSVFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDFR
                     QFCDDNAVGILVVALENQAEVVDCQDFNKLYEVPISKPTSVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            3971..5131
                     /locus_tag="KLC54_001276"
     CDS             3971..5131
                     /locus_tag="KLC54_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HBD9177647.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            complement(5128..5331)
                     /locus_tag="KLC54_001277"
     CDS             complement(5128..5331)
                     /locus_tag="KLC54_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177648.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEINEK
                     EKEELATLLNSLINAKDKALLSN"
     gene            complement(5333..6013)
                     /locus_tag="KLC54_001278"
     CDS             complement(5333..6013)
                     /locus_tag="KLC54_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="laccase domain-containing protein"
                     /protein_id="HBD9177649.1"
                     /translation="MGRSRKNFLSLLENDKVVIFCAFDKDYNVFRAKVYSENLFYHLG
                     FKDIKKCVFMDQIHSHKVIIYEKNLKNLSCDGLISKEKNIALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDDKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTPKRF
                     VSVVYLKD"
     gene            complement(5977..6588)
                     /locus_tag="KLC54_001279"
     CDS             complement(5977..6588)
                     /locus_tag="KLC54_001279"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HBD9177650.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLKAKYRPNLGDSIAINGACLSVT
                     KLYEGGFEVELSRESRTHIAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGTLEKI
                     QKDENGVDFYISLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            complement(6597..>7393)
                     /locus_tag="KLC54_001280"
     CDS             complement(6597..>7393)
                     /locus_tag="KLC54_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177651.1"
                     /translation="LNSSLADLTKLQGSFDISKMLLNSDFNLKINDFSKLGFLLDRKL
                     KGKAEFNGKVGFDKSLNFVVNSPNLFEGRLQSTLKDNLLLADLNGVDLSSLAQGLDFM
                     DVYQGKADVKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITNDVYRTANA
                     KALIKKENIKLDLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGTTE
                     NPKVNLNAGSVLNSIKNVVGGGVSDGAKSTGDKVDKAVNKLLNKIF"
BASE COUNT         2587 a         1290 c          891 g         2625 t
ORIGIN      
        1 acttttaagc cttagaatta tcacccataa tattaacttt aaagactatc tgagcaaaag
       61 tttttatgta ccttcttatg attttgaaaa attaaaagaa aaagaataca atcccattat
      121 atcttacttc ttaaatcaac atacaaatga aaaaattaaa gaattttatg gtgctttatt
      181 ttttgcactg cccatatctt tagagcttag aaacgatgta aattactatg gcatagcaca
      241 ccttatagca attagcggtt atcacatagg cttgcttttt agtttaattt tctttatttt
      301 agctccaatt tatagttttt tccaaaaaat atattttcct tatagaaatt tacgtttaga
      361 tttaagtatt ttaattttta cactactttt agcttatgct tgtttaatag gatttatccc
      421 ttcttttgtg cgctccttga ttatggcttt ttgggttttt tatctattgt gcaaaaatat
      481 aaaaattatt aatttcttta cgcttttttg tagtatttta ttgtgcattt ctctttaccc
      541 tagactttta tttagtattg gatttttatt ttctatttta ggtgtttttt atattttttt
      601 atatatgcat cattttgcaa ataaatttaa taatcttata aatattattt tgcttaatat
      661 ttggactttt tttgctatgg ttttacctgt gctttatttt tttccactta taagctacca
      721 acaaatttta ggtattattt tgagtggaat ttttgtaata ttttatcctt tagtattatt
      781 tttgcatctt ataaactatg gagatttgct caattttatc ttagatgaat tttttaaatt
      841 taaaatttat ggaactaata tctatatccc attttggatt tttataagtt atcttattgc
      901 ttctttaatc tctgtacgat ttaaatatct agcttttctt tgtatttttg cgaattttat
      961 tcccttcatt atgattgtaa tttagaaaat aatagagttt aagcccaaaa agataaataa
     1021 tccaagaaat ataaatccaa ataaaaaaga ataaaatagt agaaaaagat ccataaacac
     1081 tagcgtatgt tttattatat accacataat atacaaataa attttttcct atataccaaa
     1141 tagcacccgc tccaaaagat actaaagcta aacttttaag agttccctta tgaacagaac
     1201 ttgaataaga tataaaaaat aaaccccaaa taattacaaa gggtaaaatt tcaaaaaaat
     1261 taaaccctat tttataatca tctaaagttt gttggataaa acctgaaata taaaaactaa
     1321 gcccaagccc caaaggaaca agagttaaaa gagtccaata agaactaatg ctttgccaaa
     1381 gtcctttagg ttcattttta gtaatacgat tgattacaaa atcatagcct gaaaaaaaag
     1441 ctaaagaagt aaatgccata gcaataagac ctacaatacc caaatttaca ctatttttta
     1501 aaaaagtatc gatgtaggta gcaacaacat cttgttgcgt tggtattaaa aaagcaaaaa
     1561 ttacttgctt tgctttttca taataagctt taaaactaga aatttgcgta aaaacagaaa
     1621 aacatacaaa taaaataggt attaaagata atacagtata aaaactaagc gctgctgcat
     1681 aatttaaaat ttccttatca cgcaaattta gcaaaatagt aaaaaaattt ttcaccttct
     1741 aaagtcccat tttaaaagga tttagtatat tatttggatc aaaagctttt ttaatatttc
     1801 tcattaaatt catttcggct tcagaaaaag ctaaattcat aaaaggtgct ttagagagtc
     1861 cgataccatg ctctccgctt aaagttcctc caagtttcac tgttaattta aaaatttctt
     1921 ccacagcttc atagcctttt ttcacctgct ctttatcatt tttatcagga accataacat
     1981 tagtatgcac atttccatcc cctgtatgtc caaaacaagg aattttaaaa ccatattttt
     2041 tagaaatctc atctatacct tcaagcaaag caggtagttt agaacgcgga actgtaatat
     2101 cttcattaag ttttaaagtt ccatacatgg caatgctttg agaacaattt cttctagcaa
     2161 accaaatatc tgcggtttct tgttcatctt ttgctatttt aaattcacta gctccagctt
     2221 ctaaaaaata atgttctaaa tttcttaaat cctcatcaat agcctctcta acattaccat
     2281 ccacatcagc aatcaaaata gctccagctt ctataggcaa acctttgtta aatttactct
     2341 caaccgctct aatgctaaga ttatctaaaa attccataga cacaggattt acgccactag
     2401 caagactttt ataaaccgca ttcatagcac tttttacact tggaaaaata gcaaaagcag
     2461 tttttttgaa tttaggtaaa ggtattaatt ttaaagtaag ctcacttaaa actgccaaag
     2521 aaccttcact agcgattaaa attcctgcca aattataacc tgctacatct ttaatagtgc
     2581 gttttcctgc acgaatgatt tctccgctag acaaaacagc ccttaaagcc atcacataat
     2641 cttttgtaat gccatatttt gcagctctca ttcccccagc attttcgctt acattacccc
     2701 ctaagctaga atactccatg ctagcagggt caggcggata aaaaagtccg tatttagcca
     2761 cttctttttg taaatgtata ttaataaccc caggttgcac aacagccact aaattttcaa
     2821 gatcaatttc caaaatttta ttcatatgct tttcaaaagc aagcaccaca ccgccattaa
     2881 cagctaaagc tcctcctgta aaaccagatc ctgagcctcg tggtatgact atgatattat
     2941 tttcattgca aaattttaaa atttgagcaa tatcttcttc atttcttgga aaaagaaccc
     3001 catcgggtaa ataatgtttt tttgtcgcat catagctata agctcttttg tgaatttcat
     3061 caaaataagc gttttcttct cctaaaaatc gtttaaaata ttgttcaaat tcttttttca
     3121 tgtttattgc accttaggaa gattaatcaa agcatcataa tatctataat aattccctat
     3181 ttcttgagag ttaaaatcaa aaaaattact tttatatcca cctatacgag aataaaaagg
     3241 aacctgaacg ctagttggct tgcttatagg cacttcataa agcttattaa aatcttgaca
     3301 atccacaact tctgcttgat tttccaaagc cacaaccaaa atgccaaccg cattatcatc
     3361 acaaaattgc ctaaaatctg aacgcttagg agaaagagtg gccgttctaa ttaattgtgc
     3421 tccaaaaatg tcaatatggg taaaatatat ctgcggaaat tctctaacaa gttcattata
     3481 agtttgttca tcaggagcaa ttaccaatcc tctatcataa agaaaattta aaacaacctc
     3541 atcacctact ttaggtaaaa catttggtaa aggcaaagca tcttgcttaa gagctgaaaa
     3601 aacactaaat tctaattttg ccaaaccatt ttttttatct ataacacttg ctctagcgat
     3661 gatactttgc gaattgctaa aatgttgcac tactacgcca cttgaataaa gttttatatc
     3721 atcactatct ttaatataac cataaatatc atcaactttt acaagttcac tttttatagg
     3781 ttttaaatca aatccaaccg caaagaggct aaggtttaaa gctaaaaaac acactatagt
     3841 tttaaacaaa tttgctcctt aaataaaaat ttatagaatt ataatccttt tttgttaagc
     3901 aattgtaaga aaaataaagt aaaatatagc tttcaaattt caaaattctt ttaaaaatta
     3961 aggttatctc atgaaaaaat tattgctttt atttattttt gttgttcaaa gttttgcagc
     4021 tttaagtgtt gaagagctaa cttgggataa tggagatacc ttgcttaaat tcttacaaag
     4081 aaattccata cctatgtcgc tttattatgg acttgataga gaagatcaag aacttgcttc
     4141 tgatatagcc tataaaataa aatatcaagt tttaaaagat gaaaacaaca acatagaaca
     4201 agttttaatt ccaattagtg atgatttaca aattcatatc tataaagata aagatggaca
     4261 atacactctt gcttttactc ctgtatctta tcaaaaagaa gatagaattt tacatttaac
     4321 cattaaaagc tctgcttatc aagatgtcta tgaagaaagt ggtagcagta ctttagctcg
     4381 tgctatggtt cgtgcttttc gaggaagtat aaattttcgc aatatccaaa aaggtgatga
     4441 agtaacccta tattatgaac aaaaaagacg catgggtaaa ctttggggcg atataaatat
     4501 aaaaatggca atggtagaaa ttaataaaag cgctagagaa gtcttttctt ataatgatat
     4561 attctatgat cgcgatggca aagaattaga atctttttta cttacaaaac ctgtgaacta
     4621 cactagaatt tcctctcctt ttacaacagc aagatatcat cctatattaa aacgctatcg
     4681 cgcccatctt ggtatagact atgctgcacc tactggaact cctgtaaaaa gtgctggcaa
     4741 aggagtagta acctttatag gcacaaaagg tggttatgga aatgtaattc aaatcaagca
     4801 tgactcaggt tatatgactt tatatgctca tcttagtcgt tttgcaaaaa ttaaaaacgg
     4861 acaaaaggta aatcaaggac aagtaattgc atatgttggt tcaacaggta tgagcacagg
     4921 tcctcatttg cattttggag tatatttaaa taataaagct ataaatcctg catctgttgt
     4981 aaaaatcgcc aaatcagaac ttagtggaaa agcaaaagag aattttaaac atatcatagc
     5041 tggatacgag caggttgtta aagaagccct agcctcgaat caacctaatc ctccaaaaga
     5101 agaagatttt gaaaactata tagaatttta attactcaac aacgctttat cttttgcatt
     5161 gattaaagaa tttagaagag ttgcaagctc ttctttttct ttttcattaa tttcacaaaa
     5221 atctgcatca atcaattgtt ttaccaaagc ttcatttaac aaatctccat cgccaaattc
     5281 tctagctttt tgaatgattt ttaacactct taaatctttt ctttcataca ttttaatcct
     5341 ttaaataaac cacactcaca aaacgcttag gcgttttatc acgacgataa gaaaaaaaac
     5401 tctcatcatc aaaactacaa attccacaat ctttaatatt ttcaatgcct aaattttgag
     5461 cttgaaattt tactaaagct tttaaatcaa gtttatcatc ttgaacaaat tctttaaatt
     5521 cttttttagc aaattctaaa atttctccat ctatttcata atttttagca caaattccag
     5581 gcaggataaa aagatgaaat ttattcttat ctaaatgtga attttgcata gtaatttgat
     5641 caacgcattc ttttaggata ttttcaaagc ttccttttct acctgaatgc aaagctgcta
     5701 taatgccgct ttcatgatat aagatcaaag gcagacaatc cgcacttaaa acacaaagag
     5761 cgatattttt ttctttactt ataagcccat cacagctaag attttttaaa tttttttcat
     5821 aaatgataac tttatgagag tgaatttgat ccataaaaac acatttttta atatctttaa
     5881 aacctaaatg ataaaataaa ttctcactat aaaccttagc tctaaaaaca ttataatcct
     5941 tatcaaaagc acaaaaaata acgactttat cattttctaa taaagataag aaattctttc
     6001 gacttcttcc catgataatc ctttgttttt accttgcaat tgtgcataaa tataacgagc
     6061 aagtaaatca ctttctatat ttatttttct acctacttga tagtctttaa aaagcgtttc
     6121 tttaaaagta ataggaataa tagtaagcct aataccattt tttaaaattt cattgatagt
     6181 aagacttact ccatcaacag ctatacttcc tttttctgcc ataaatttca tagcttcttt
     6241 aggtaaagat atataaaaat ccactccatt ttcatctttt tgaatctttt caagtgtgcc
     6301 gataaaatca atatgtcctt gcataagatg cccatcaatt ctatcgccat atcttaaagc
     6361 aggttctata tgaactttat cttttaaatt ctctatagct atatgagtgc gactttcacg
     6421 agaaagctcc acttcaaaac ccccttcata aagttttgtt acacttaaac aagctccatt
     6481 tatggctatg ctatcgccaa gatttgggcg atattttgct tttaagctta aagtattgtt
     6541 ttgataagat tgaactttag caatttctct tatgagtcca ttaaacattt tttaccttaa
     6601 aaaatcttat ttaataattt attcaccgct ttatcaactt tatcgcccgt acttttagca
     6661 ccatcactca caccgccacc tactacattt ttaatagaat ttaacacact tcctgcattt
     6721 aaattcactt taggattttc cgtagttcct gtaatacttc ctttaaaatt ggctctatcg
     6781 agtttaatat caaaaggcaa atttaaagcc ccgcttttag aatttaaagc tcctgattgt
     6841 actaaaatat aagaacgatc tgcttgcata ttaagatcaa gtttgatatt ttctttttta
     6901 atcaaagctt tagcattagc agtgcgataa acatcattgg taatatcttt tagtgttaaa
     6961 atttttaaag cattggtaat aagatttggt tttaatttac cctctttcat atccaaatta
     7021 acctctcctt cttcacttaa aagattgtaa tttgccttca catctgcctt accttgataa
     7081 acatccataa aatctaaacc ttgagctaga ctacttaaat ccactccatt taaatcagca
     7141 agcaaaaggt tatctttaag tgtgctttga agcctccctt caaataaatt tggactattt
     7201 acaacaaaat ttaaactctt atcaaaacct acctttccat taaattctgc cttaccttta
     7261 agttttctat ccaacaaaaa gcctagtttt gaaaaatcat ttatctttag attaaaatcc
     7321 gaatttaaaa gcattttgct tatatcaaaa cttccttgta gctttgtaag atcagctaaa
     7381 gatgaattta aaa
//
LOCUS       DAEDTT010000078         7135 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.078, whole genome shotgun sequence.
ACCESSION   DAEDTT010000078 DAEDTT010000000
VERSION     DAEDTT010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7135
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.078"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..3242)
                     /locus_tag="KLC54_001281"
     CDS             complement(<1..3242)
                     /locus_tag="KLC54_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HBD9177652.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANASVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFDYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYEYLKKLFSFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQKGWELPTFYKKIDTDSNYNKMLDFILEGDNHKYIN
                     IGIASHNIFEIAYAYTRISEAGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDENWKAQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYESKKFSNESDTDFILAQNRAWAKEIKAKYENLKDYDVYPVIG
                     ELDFKAENLNVLEVKDKIEDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVK
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDAGI
                     PKDALIFLPSKGSDISKYLLVDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYNDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLENNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGVKKSAIGLGRKVGIYNYITQFLEIKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFMNDLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVILGANIANIDLSISYDEQDISMIERIVQSIGAKV"
     gene            complement(3372..4394)
                     /gene="selD"
                     /locus_tag="KLC54_001282"
     CDS             complement(3372..4394)
                     /gene="selD"
                     /locus_tag="KLC54_001282"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(4344..4346),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HBD9177653.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDINILKELLEGANDKVQECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTAKVGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKSMMELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKELIPDLNEEKLLLCDPQTSGGLLISISEKESLECLKKLEDENIQAKIIAKVVNKQE
                     NDIIIS"
     gene            complement(4404..4976)
                     /gene="yedF"
                     /locus_tag="KLC54_001283"
     CDS             complement(4404..4976)
                     /gene="yedF"
                     /locus_tag="KLC54_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HBD9177654.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLNSLNLNPIIDENAQEFCIKVQKKNFNSSEVNIHDYNVLFLKTDKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFF
                     NKSKELKIGNIGNAYEILNELFGKAKIITL"
     gene            complement(5088..>7135)
                     /gene="ccaA"
                     /locus_tag="KLC54_001284"
     CDS             complement(5088..>7135)
                     /gene="ccaA"
                     /locus_tag="KLC54_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HBD9177655.1"
                     /translation="VIGLVILISLITKQVSQNITKNTEDILASITKEYATQTQGIFGE
                     MIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDNSAYSNFTYLYLIDPPEYFK
                     EESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIANLQVVQDILKKAKYGENKVY
                     IGRPIKMNLEGQDFDAVNVAMPIFDRKNQVVGVIGMTLDFSAIATYLLDPKSQKYNGE
                     LRILLNSDGLVAIHPNKNLVLKNLKDVNPNKGAQETYKAMSEGKNGVFNYIAFDGDDS
                     YAAINSFKVQDSSWTVLVTAPKYSVFEPLKKLQLIIIGASFIFIFVVLGVVYYCVRKI
                     VASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGAMGRIINENIEKIQISLEQD
                     QNAVDESVQTAREIEKGNLTARITKNPINPQLVELKNVLNRMLDVLQSKIGSNMNEIN
                     RVFDSYKALDFSTEVLDAKGEVEITTNILGKEIKKMLVASSNFAKDLANQSEELKNSM
                     QKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVASQADDIKNIVNVIKDIAEQ
                     TNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKSLSEIEANINILVQSVNEVA
                     ESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITNEVNQIAAAILEDVDKKRF"
BASE COUNT         2372 a         1263 c          864 g         2636 t
ORIGIN      
        1 acttttgctc ctatactttg aacaattcgt tctatcatac taatatcttg ctcatcataa
       61 ctgatactta gatcaatatt tgcaatattt gcacctaaaa tcacccctaa aacatctttt
      121 aagctttcat ttccacaaag tcttaaaacc atattcttta ttttagtata agaaaaaaga
      181 ttatcttctc cacgtatatt aacataatct tttgaaacac taaactcatt tttataatga
      241 taagcataag attgagacat tttaattaaa tcgttcataa aatcttgtgc ttcttttaaa
      301 tctatttgtg ctaatttttt tgaaaattta tcttcaatta aatgatcatc aaaatcttct
      361 tgcttaatct ctaaaaattg agtgatataa ttataaattc ccacttttct acccaaacct
      421 atagctgatt ttttaacccc tccaaaaggc tgacgaagga ctatagcacc tgtggttggt
      481 ttgttgatat aaatatttcc tgcttctata tgagtgtgaa aatactccca ttctctttca
      541 tctaagcttt caaaacctgc agttaaacca taacctgtgg aatttactat atcaatagct
      601 tcttttaagt ctttagcctt cattacactt aaaatcggta caaaaagttc attcatatga
      661 gtaaaatcac cctttttagt gccatatttt atacctggag tcatcaaata aggattattc
      721 tctaaaaact taggttttaa tgcccattct tcataaggtt gtaattcatc taaggccttt
      781 tgaactttag aacttggctt atcagccaaa gtacccaatt tatttttaaa ttcaaaagga
      841 ttgcccactg ccatagaact tgcagcatct actaaagtct ttttaaattc ttcatcatta
      901 taaacctctt cttctaagac taacaaagaa gtagccgaac atttttgacc actattgcta
      961 aaagcagaat gaatgatatt tttaatcgca ctatcacgat cagcaaattt agaaactata
     1021 gtcgcattct ttccgcccgt ttcagcactt aaaagcaagg ttggattagc ttttaacata
     1081 gcataagcag tatcctcccc tcctgtaaga attgaaaatt taatcgcttc atcaacaagt
     1141 aaatatttag aaatatcact tccttttgaa ggtaagaaaa tcaaagcgtc ttttggaata
     1201 cctgcatccc aaaaacactt acaaagcata taacctgtta gagttgaaag tgaagaaggt
     1261 ttgtaaatca ccacattacc tgcagctagt ggtgcagcta tggtgcccac tgaaatccct
     1321 ataggaaaat tccaaggagc tatggtaacc cctatgccct taggtgtgaa tttaactttt
     1381 ggattttgtt ttttaagctc ttctaaagag tgcggataaa actctataaa atcaatagcc
     1441 tcacttactt caggatcgat ctctaaaaag gttttgccca cttctaaagc tgccaaacct
     1501 atcaaatccc ctcttctttc tctcataagt tttgcacttt tagctaaaat ttgataaatt
     1561 tcatcatgac ttttttgtgt aaatttggaa tttttagcta cttctaaagc ttgtttgatt
     1621 tctttttctc cggctaaata agcctttcct atcactctat cttcaatctt atctttaact
     1681 tctaaaacat ttaaattttc tgctttaaaa tcaagctcac ctataacagg ataaacatca
     1741 taatctttta aattttcata tttagcttta atttctttag cccatgctct attttgcgct
     1801 aaaataaaat ccgtatcact ttcgttgcta aattttttac tttcataaga acttatgata
     1861 tttgattctt tatttctatc ttgcttacga tgtgtagtat tatcaagcgt ttttatgcct
     1921 tctaaagatt ttaaaaaaag ttctttttga gccttccaat tttcatctcc tactttaaga
     1981 ttgaaaaaat aacgcataaa attatcttca cttgtatttt catcaaggcg tcttacaaga
     2041 taagcaatgg cattgttaaa atgtgcttca tcgcaaactg gagcataaag gattaaatca
     2101 tgcattttag ataattcata agaacattgc aaactcatac cttcaagcat ttcaaaagta
     2161 aaagaatcta aagcacccgc ttcacttatg cgtgtataag cataagcaat ctcaaagata
     2221 ttatgacttg caattcctat gttgatgtat ttatgattat ctccttcaag aataaaatca
     2281 agcattttat tataattgct atcagtatct atttttttat aaaaagtagg aagttcccag
     2341 cctttttgag atgcaatggt ttcttcactt tccatattag cacccttaac aaaacggatc
     2401 ttaataggct tcataccttt taaaaccctc tcttttgaaa aagaaaaaag ttttttaaga
     2461 tactcataag aatcaggaat ataagcttgc aaaacaatgc ccgctttaat atcaaatttg
     2521 gccacacttt ccataaaagc tgcaacggtg agttctaaat ctctaaattc ttccatatcc
     2581 agattgataa atttagatac accttgtttt ttctcttctt ctaaggctaa agcataaaga
     2641 taatctagtc tttttactac ctcttctttg gaataatcaa aatctataat attaatttgt
     2701 gaaaaaatcg tagtaatttt tatggaaata taagtgatat aacttgattt taaagcctct
     2761 tcatattttt gcatacgata tttactctca gcttcaccta aaacctcttc gccgattaaa
     2821 ttcacattta aggtaatttt atcttgctct tttctttttt taatatgcgg ctctaaaaca
     2881 ctagcgtttg catctagaac catagcttta gtatcttctc ttaaatgttt gacaaaaaaa
     2941 ggtacactta aattaggagc aaatttgcca aaatttaaaa agctaaaaag tagaaatttt
     3001 tcaaaagtgc taaaaaaatc cgctatgcca tatttactca aagtatattc tataagctca
     3061 aaacttgcat ttttatcttt gcatctaaaa gaacgatcta aaagttctat aagcataact
     3121 ttatttttgg gattgttaag aagtttttgc attttagcat gaaattcttt ttcagaattt
     3181 gaaatattgg cttctatttg tccttgcaat tcttcagcta aggctaaagc tttttgtatc
     3241 atttcgtatc tcctaagata aaataaattt taataaataa tatataaata agataaaaat
     3301 aatattttaa atcatagaaa atgtataaaa aatgataaaa aaaattttaa tgggtatata
     3361 agtaacaaaa attaagaaat gataatatca ttttcttgct tatttacaac cttagcaata
     3421 attttagctt gaatattttc atcttctagt ttttttaaac attctaagga ttctttttca
     3481 cttatagaaa ttaaaagtcc tcctgaagtt tgcggatcac aaagtaataa tttttcttca
     3541 tttaaatcag ggataagttc ttttataaat tctaaatttt tataagctcc agcaggaatt
     3601 aaacccatat taaaatactc ttttactcca tctaaaaaag gaagttcact ttcaaaaatt
     3661 tcaaaagaaa tatttttatt tagcatttct tttaaatgtc ctaaaagtcc aaaacctgtg
     3721 acatcactca tggcacttgg atgaaattta agagcaattt gactggcttt ataatttaac
     3781 tccatcatac ttttaagcat tatatctaaa tgtttttgat ttaacatttg tgcctttaaa
     3841 gccgtactta aaattcctgt tcctaaaggc ttggttaaaa taatacaatc tccaacttta
     3901 gccgtattat tagcaataaa tttactagga tgtacttttc ctgtaacact aagtccaaaa
     3961 aaaagctcag tgctttctat agtatggcca cccacaacta aagcattgca ttcttgaacc
     4021 ttatcatttg caccttctaa aagctctttt aagatattta tatcatgatt acaagtatca
     4081 aaacctacta tatttaaggc attaattacc tctgcaccca tagcaaaaac atcgcttaaa
     4141 gcatttgctg cagcaatagc accaaaatga taagcactat ctactatagg agtgataaaa
     4201 tcaagcgttt gcaccaaagc taaatcagga ctgatttgat atacgcttgc atcttcatta
     4261 tttccgatat cactaagtaa agcaggagtt ttttgcatga aatttaaaat tgttttaaga
     4321 ccacccgggc ttaatttcgc tgctcaacct gctgctttaa caaaatgggt taaattttga
     4381 tttttatatt gcagtgtttt tccttataga gtaatgattt ttgctttacc aaaaagctcg
     4441 tttaaaattt cataagcatt gcctatattt cctattttaa gttctttgct tttattgaaa
     4501 aattccaaac aagctccgca acttatgatc tcaataccta aattttcaag ttctttcata
     4561 gctaaatgtg ctttatgatt ttcatcaaca ttgattaaaa cactttcatt tacgcaaaga
     4621 attttacttg gagcatgatc taaatttttt aaggtactta aaaatcctac aagtaaattt
     4681 tgtcccaatt caccctcacc cactttgtcg gtttttaaaa ataaaacatt ataatcgtga
     4741 atatttactt cactagaatt aaaattcttt ttttgtactt tgatgcaaaa ctcttgtgca
     4801 ttttcatcta taataggatt taaatttaaa gagttaagaa attttacaac attatttttt
     4861 gaaataatag aatttaaaac aatttctaaa atttcatttt cttgaagttt ttcaagagcg
     4921 ttttttgttt caactatagg ctgaggacaa gaaagattgc gacaatcaat tttcattatt
     4981 tttccttgat attagctttg aaaaataata ttattttatt acttgttttg tgtttaaaaa
     5041 ttttaaataa tatagaaaaa atttaaaagc tcaaaaatga gcttttttta aaatcttttt
     5101 ttatccacat cttcaagaat tgccgcagca atttgattga cttcatttgt tatattattg
     5161 gtaacatttg caacttcgac attttcctta gttacagttt caagttgtgc tatagcatcg
     5221 ttaatctgtg tgattcctgc tgtttgttct tttacagatt ctgctacttc atttacgctt
     5281 tgaacaagta tattaatatt tgcctcgatt tcagataagg attttcctgt tctttccgca
     5341 agctgtctta cctcatctgc aacaactgca aaaccacgcc catgttctcc agcacgtgca
     5401 gcttcaatag ctgcatttaa agcaagaaga ttcgtttgct cagcgatatc tttaatcaca
     5461 ttgacaatat tttttatatc atcagcttgc gaagcaacct caactgtttt tccacttaca
     5521 ttttgcatag aagaattaat ctcctctaca gctgcagccg attgttctaa agaactcgct
     5581 tgtgcattag agccatcagc aagtttttgc atagaatttt ttaactcttc tgactgattg
     5641 gctaaatctt tagcaaaatt tgaagaagct acaagcatct ttttaatttc tttacctaaa
     5701 atattagttg taatctcaac ttcgccttta gcatcaagta cctctgtgct aaaatcaagc
     5761 gctttataac tatcaaaaac tctattaatt tcattcatat tagaaccaat tttactttgc
     5821 aaaacatcaa gcattctatt aagaacattt ttaagttcta ctaattgagg gtttatagga
     5881 tttttagtaa ttcttgcagt taaattacct ttttcgattt ctctagcagt ttgcaccgat
     5941 tcatctacag cattttgatc ttgttctaaa gatatttgaa tcttttcaat attttcattt
     6001 atgattctgc ccattgctcc tagctcatca ttggcacgaa tttcaatagc cttaggttca
     6061 attttttcat ggtttaaaaa acggaaaaat gattctaaag aactaagaat cacaggcaat
     6121 ctagatgcga caatttttct tacgcaataa taaaccactc ctaaaacaac aaaaataaaa
     6181 ataaaagatg caccaataat aattaattgt aattttttca aaggttcaaa aactgaatat
     6241 ttaggggcag ttaccaaaac cgtccaagaa ctatcttgca ctttaaaact attaatcgca
     6301 gcataagaat catcaccgtc aaaagctata tagttaaaaa ctccattttt tccttcactc
     6361 atagccttat aagtctcttg tgcaccttta ttaggattga catcttttaa attttttaaa
     6421 accaaatttt tattaggatg aattgcaaca agaccatctg aattcaaaag aattcttaat
     6481 tctccattat atttttgact cttagggtct aaaagataag tagcaatagc cgaaaaatcc
     6541 aaagtcatac cgataacacc tacaacttga ttttttcgat caaaaatagg catagcaaca
     6601 tttacagcat caaaatcttg accttctaaa ttcatcttga taggacggcc tatatatact
     6661 ttattttccc catattttgc tttttttaat atatcttgca caacttgcag attagctatt
     6721 tcatcactag cttgtattgc ttttattccg cctttattat ccttttcttc atcagcgtaa
     6781 agcatgacaa attttccact ttgagtattg aaaaatttac tctcttcttt aaagtattct
     6841 ggcggatcga taagatacaa ataagtaaaa ttagaataag cactattatc aaaagtattg
     6901 gttataatat ttgttatatt atctatatct aaatcttctt tagaggttga tctaaacatt
     6961 tctgttaaag tacctgaaat acttttattt aaagcgatca tttccccaaa aattccttga
     7021 gtttgggtag catattcttt cgtgatagaa gcaagaatat cttctgtatt tttagtaata
     7081 ttttgactta cttgttttgt gattaatgaa attaaaataa caagtccaat aacaa
//
LOCUS       DAEDTT010000079         7118 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.079, whole genome shotgun sequence.
ACCESSION   DAEDTT010000079 DAEDTT010000000
VERSION     DAEDTT010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7118
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.079"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..455)
                     /locus_tag="KLC54_001285"
     CDS             complement(<1..455)
                     /locus_tag="KLC54_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HBD9177656.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKDFAKDTRADFIILNNDMKISSVKNPDFFSNLKEGEILN
                     FDSKKILTKSFIYKGYKYIIIVYPRFLDLELFWTKMAIGFGVCLLFVFI"
     gene            complement(449..1111)
                     /locus_tag="KLC54_001286"
     CDS             complement(449..1111)
                     /locus_tag="KLC54_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HBD9177657.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLGKIQDLKEQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLANYEFFYKNQKLEISNLDYELL
                     KYFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGVGYK
                     LC"
     gene            complement(1098..2681)
                     /locus_tag="KLC54_001287"
     CDS             complement(1098..2681)
                     /locus_tag="KLC54_001287"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HBD9177658.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKVPKDELMQMLSD
                     VEVAITRSSTDVDINFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNTSVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            complement(2678..3166)
                     /locus_tag="KLC54_001288"
     CDS             complement(2678..3166)
                     /locus_tag="KLC54_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177659.1"
                     /translation="MKKYITISILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGDSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            complement(3166..4836)
                     /locus_tag="KLC54_001289"
     CDS             complement(3166..4836)
                     /locus_tag="KLC54_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HBD9177660.1"
                     /translation="MSEVNKKVQGGVDDYLEEEDFGQLLEAFDKSREEATTEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQDDNSKLLFNVGDSIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSTKELSSSPV
                     QEYAKIHKVGDIVKGAIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRMKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            complement(4968..5801)
                     /locus_tag="KLC54_001290"
     CDS             complement(4968..5801)
                     /locus_tag="KLC54_001290"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HBD9177661.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIENFKI
                     N"
     gene            complement(5791..7077)
                     /gene="aroA"
                     /locus_tag="KLC54_001291"
     CDS             complement(5791..7077)
                     /gene="aroA"
                     /locus_tag="KLC54_001291"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HBD9177662.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQNLKAFNYKS
                     EISSAQVKTAMILSAFRANNVCAFSEISLSRNHSENMLKAMKAPIRVSNDGLSLEISP
                     LKKPLKAQNIIIPNDPSSAFYFALAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
BASE COUNT         2303 a         1278 c          848 g         2689 t
ORIGIN      
        1 aaaataaaaa caaacagcaa gcatactcca aaaccgattg ccatttttgt ccaaaaaagc
       61 tctaaatcta aaaaacgagg ataaacaata ataatatatt tatatccttt gtaaataaag
      121 cttttagtga gaattttttt tgaatcgaaa tttaaaattt ctccttcttt aagattagaa
      181 aaaaaatcag gattttttac agaacttatt ttcatatcat tgtttaggat aataaaatca
      241 gccctagtat ctttagcaaa atccttgata ttagcatcat ttaaatgctc taagagagaa
      301 aattttaaaa catcatcaag gcttttgatt ttttgttcat attgttttat aagcaagaaa
      361 ttaagataag agttagtaaa agtataaaaa ataaacccaa aaatcaaagc caatacaaca
      421 aaaaaaacta taaaaatatt tttagttttt agcataattt atagccaaca cccctaacac
      481 ttataatatg atcttttagt tttggaaatt tatttctaag tcttgttaga gctatattga
      541 ttgttttatc acttgtagta tcatctttcc aaacgctttc gcttaaaaat tgtctagtaa
      601 gcaaggtatt tggattttca aaaaaatatt ttaaaagctc atagtcaaga tttgagattt
      661 ctaatttttg atttttgtaa aagaattcat aattagccaa atctaaaata aaatcaccaa
      721 aagatagttt ttcttcttct tttttatggc gttttaaaat tgctttaatg cgaagcaaaa
      781 gctcattaaa atcaaaaggt ttacaaacat aatcatcaca accactttca aagccttcga
      841 gcaaatcttg atgcaaagcc ttggctgtaa gaaaaataac tgcttcttta tatccttgct
      901 cttttaaatc ttgaattttt cctaaagaat ctccactggg caaatttcta tcgactatta
      961 aaagatcgat ttgctcatta tcgagcaaat cttcaactcc aaaaaaatcc gctaaagata
     1021 taacttcata accgctagat tttaacttta aaacaagcag ttcgtttaaa tctatatcat
     1081 cttctataat taaaatttta aatttcaaca tattggacaa atacacacgc ctctaattgt
     1141 tttagttcat ctaatacttc tttttgaact ttttcatcaa tcaaaacaac agccaaagca
     1201 tacccaaaac catctctacc aagcctaaaa tcagctatgt tgatattttt agctgccaaa
     1261 acggaactga ttttagctat aactcctggt atgtctttgt ttttaaaaat aatcattttt
     1321 ccctttggct taaaatcagt tttaaagcca tttaatccaa ctatgcgttg ttcattttca
     1381 ttaaacactg ttcctgaaac actggtattt gaattttcgg tgataatttt aacgctaagt
     1441 ttattattat aaccactatt tggaagagtt tcgcaagata attcaactcc tttttctttg
     1501 gcaacaaatt ctgcattaac ataattaatt ttctctccta aaattccacc caaagcacca
     1561 acagctgcaa aagttagcat agaatttgca tactcaccaa taattccttc agcctctaat
     1621 ttaatacttt ttataggatt tttatcaatt tgaacagcta aaaaagccat tttagaaaca
     1681 agttctatat aaggagctac aaaaggtggt aagtcttcag ttttaattgg taaatttaag
     1741 gcattaggat aagccacgcc tcgtgctgca cttaatgctt gctcacaagc ttctcttgcg
     1801 atattgtctt gactttctaa agtatttgct cctaggtgag aagtaactga aatattttca
     1861 aagtctaaaa gaggatgatt ggtcgcgggt tctttatcga acacatctat accaagccat
     1921 gctattttac cactttttaa accttcatat aaagcctctt ctgtgtataa tcctccgcga
     1981 gcacaattta ttaatcttat tccatctttc atttttgcaa tttcttgctt tcctatcata
     2041 ccattggttt ctttggtttt tggtgtgtga atggtaataa aatcactttt ttctaaaatt
     2101 tcatccaaat tttttgcttg ctccatatct aaatctgtaa tcttagaagc agaaatatac
     2161 ggatcatagg ctaaaatttt cataccaaat gctttagcac ggatagctac tcttgaacct
     2221 atatttccaa aacctataac ccctagcgtt ttattcatca attcaatgcc gtaccatttt
     2281 tctctttccc attttctttc aatttttaaa aaattatgag cattgacaaa gcttctagct
     2341 gatgttaaaa gatgtgccat tgttagttca actgcggcaa tagtatttgc agttgggaca
     2401 ttcatcacaa tcactcctcg tttagaacac tctggaatat caacattatc tacgcccacc
     2461 ccagcacgca caagcgcttt taattttttg gcatgattta agaaatttat atctacatct
     2521 gtagaacttc tagtaatagc aacttcaaca tcgcttagca tttgcataag ttcatctttt
     2581 ggaacttttg cagcttctat aagctcaata tcttcagctt ttcttagaat atcgacacct
     2641 ttatccaaaa tagcatcaca tactataatc ttttttttca taaccaaatt tcctttactt
     2701 ctgtatttat tttatatttt tttaattctt tgataatatc atctataagt ttttcattac
     2761 ctgtatccaa aaagatttct ggactatcac ctgatttaag aagaaaatac ttcacattaa
     2821 aagaatttaa agtctgtctt aagcaaaaca tagaataaat atcatatttt ccaactataa
     2881 gttgataata tttatttttc tccttaagct cgctagtatc cgcatcaaaa tataaggtaa
     2941 atttttctgc tgctggggta aaatctcttg taggccattt tgctaattct tcttgccatg
     3001 aaagatcttg attttgggtt tgaatgcttg gctgtgtatt tgtatcttta gcaaattgtg
     3061 gaatgaaatt tacattagct ttaaattgcc aaagcaatgt aaaaacaaca gcaagcaaaa
     3121 tgagtaataa aatactcaaa atgcttattg taatgtattt tttcattaag ctagctgatc
     3181 tttaatgata tcacctaaag tcactttatc atcattattg atttcattaa gaacttctct
     3241 ttctttcatt ctaacaagat ttttaacact taggcgaatt ctatttttct tttcatcaat
     3301 aaaaactata gcagcttcaa tatcgtcgcc aatttttaaa ttttcaagca tagaagtgct
     3361 tatatcttct ttatgaatta aagcatcaac atttttactt agttctacaa aaacaccaaa
     3421 atctttaata tcgcggatag cgccttttac aatatcgccg actttatgaa ttttagcata
     3481 ttcttgcact ggagaactgc ttaattcttt tgtacttaat gatatttttt ggttttcttc
     3541 atctattttg ataattttta ccttgatttt atccccttga gagaatttgt ctttgcattt
     3601 atcgtttcta tcccaagaag catcttcatt atgtaataaa ccttcaatac caccaagttt
     3661 aacaaatgca ccaaaagaag ttactgaggt gatttctcct tcaaccacat ctgcaatttt
     3721 ataagatttc ataaattcat caaaaggtct agaaagtaaa tttcttaaag aaactcttaa
     3781 gcgtctttca tttggattga tttcaattac ttcaacatca atttcttgac ctttgttgat
     3841 ataatctttt ggatttttaa tgtttttatc ccaagaaatt tcactgatat gtaaaaatcc
     3901 ttctatatca tttcctaaat ccacaaaagc accataaggc tctatatttg atactattac
     3961 tttaatggta tcacctacat caagagtatc ttttatctcg ctccatggat caggtaaagc
     4021 cgcttttata gacaaggata aatgtttgcg ttctttatca tactttataa ctttaactgg
     4081 aaccttatca ccctctttat aaagtgttcc aggatttaca ggtcctttgt aagaaatttc
     4141 gctgtaatga acaagaccat caacacctcc tacatccaca aacataccat aagtagtaat
     4201 ttttttcaca ataccttcaa ttaaatcttc ttgttgtgct acattattga tcaattcttt
     4261 gcgttttctt ctctcgtcat ctaaagtttt tttacgagaa acaataatac tttgctcatc
     4321 tttgtcgatt ttaataattt taactttaaa tgttttacct ataatattat ttgtttcttt
     4381 aaagccatat tgagattttg gtaagaaaaa ttcaacatca ttttcatcaa caactatcaa
     4441 tccgccttta ttttttccaa ctacttttac ggtaaaaata tcatcttgat tttcttgata
     4501 gtttttaata aattcaataa ctttttcttt tctcaaagct tttttatgag aaagtaaaga
     4561 tctgccacca cgagaaccca taacagcaac tttaatacta tcgcctacat taaataatag
     4621 cttagaatta tcatcttgta tttcgctaag agctaaaata ccttcagatt ttttacctat
     4681 atctacataa acttcatcat ttttgatctc tacaatcaca ccctctgttg tagcctcttc
     4741 tcttgattta tcgaaagcct ccaaaagctg tccaaaatct tcttcctcaa gataatcatc
     4801 tacgccgcct tgaacttttt tgttcacctc gctcattatg gtcctttaaa ataattttta
     4861 gaaattgatt gattttacct tatttttctt taattagtgt taagtttttt tatttttgtt
     4921 aatttttttt aaatttttga cttttttatt ctatttgaaa acatttttta attaatctta
     4981 aaattttcta ttttggcgat aactttttgt atgatccaat caggagtact agcacctgca
     5041 ctaatgccac aatgtttttt atccaaaaac cattcttttt ttaactcttc ttcggtttca
     5101 attagatagc tatcttcaca attggttttt gcaatcaaaa aaagttgttt tgtattggct
     5161 gagtttttac cccctacaac aaccataaca tcacttttaa gcgagagttc tttaatggca
     5221 tcttgatttt taaaggttgc gtcacatata gtattaaaaa cccttacttc tttggtttta
     5281 agtattaaaa aatttactat ctccataaaa tgctcaggct tcttagttgt ttggcttacc
     5341 acagctattt tattaggaag ttttatattt tgaagttctt ttttatccaa aaccacataa
     5401 gcttttgtac ttacataact ttttactcct ttaacttcgg gatgattttc atctccaaaa
     5461 ataacaactt cataaccctc cttgctcatt tgctcgcaaa tttgttgtgg ttttgtaaca
     5521 aaaggacaag tggcatcaaa aatttctata tctttttttc tcaattcttc taaatcttgc
     5581 tttgtaatac catgagttct tataatagcc tttttttcat tgcttaaagc ttgtatattt
     5641 tccaaagttt tgacattaaa atttttttgt aaacgagaaa tttcttcgtt attatgaata
     5701 agagggccta tagttgcagc atcttttatt tgttctgctt ttttaatagc tcttttaaca
     5761 ccaaaacaaa aaccatagtt ttttgctaat tcaataatca atcctagctc ctaaatttga
     5821 taaaatctct ataaaatttg gaaaagaagt ttttatacaa tcactatcat caatctcaat
     5881 tccacaaagc aaacctaaaa tagcaaaact catagcaata cggtgatctc catagctttt
     5941 aatttttgaa gattttagtt cgcatccacc ttctatttca aaaccatcat caagttctct
     6001 agcttcaaca ccacaaagct ttagattttc aaccatcaca gcaatcctat cgctttcttt
     6061 aacgcgtaat tctttagcat ttattaaact agatttaccc ttagccaaag caaaagctat
     6121 agccaaagca ggcgcttcat ctatcaacca agcaatatta tctttaactt ctatgccatt
     6181 aagcttgcta gactccaccc tgatctcacc aatagtttca aaatcatttt gagttattgt
     6241 catttcaagt ttggcaccca ttttttgcaa aattttatac gcctctatac gagtaggatt
     6301 aagtaaaata ttttttaaaa taatttgaga tttaggcaaa ataatagctg ctaaagcaaa
     6361 ataaaaagcc gaagaagggt cattaggaat gattatattt tgagctttta aaggtttttt
     6421 taaaggactt atttcaagac ttaagccatc attgctaacc cttattggag ctttcatagc
     6481 ctttaacatg ttttcgctat gatttcgact aagagaaatt tcactaaaag cgcatacatt
     6541 attagctcta aaagcagata aaatcatagc tgttttaact tgagccgaag aaatttcgct
     6601 tttatagtta aaagctttta aattttgacc ttctatacaa agtggagcta aatttgcctc
     6661 atttcttcca taaattctag cgcctatttg agtaagtggt ttgcttattc ttctcatagg
     6721 acgattgttt aaatacttat ctccacttaa aacaaaaaaa ccagaaattc ctgctaaaaa
     6781 tcctatcatc aaacgcatag cagttcctga atttccacag tctaaaatac aatttggaga
     6841 taaaatttct ttagggggta taattttgac gcaagaatct ttttgttcaa ttttagctcc
     6901 aagatttttt ataatttcaa gagtgtttaa agtatcttga gctaagagat aattttgagc
     6961 cttattttct tcttgtgtta aaagcgaaaa tatagcaaaa cgatgagata tgcttttatc
     7021 tgctgctata ttttcaagta tagcatttac aggggtttgc aatttgtaaa ttttcatctt
     7081 aaatcaagac ccaaattttt aagagtattt aaaatttt
//
LOCUS       DAEDTT010000080         7062 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.080, whole genome shotgun sequence.
ACCESSION   DAEDTT010000080 DAEDTT010000000
VERSION     DAEDTT010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7062)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7062)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7062
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.080"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            30..800
                     /gene="cdtA"
                     /locus_tag="KLC54_001292"
     CDS             30..800
                     /gene="cdtA"
                     /locus_tag="KLC54_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HBD9177663.1"
                     /translation="MTFFLYACSSKFENVNPLGRSFGEFEDTDPLKLGLEPTFPTNQE
                     IPSLISGADLVPITPITPPLTRTSNSANNNAVNGINPRFKDEAFNDVLIFENRPAVSD
                     FLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYPNDFAMIKNAKTN
                     TCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQAPITNLYGDFHK
                     VFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            797..1594
                     /gene="cdtB"
                     /locus_tag="KLC54_001293"
     CDS             797..1594
                     /gene="cdtB"
                     /locus_tag="KLC54_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HBD9177664.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRTQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            1605..2174
                     /gene="cdtC"
                     /locus_tag="KLC54_001294"
     CDS             1605..2174
                     /gene="cdtC"
                     /locus_tag="KLC54_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HBD9177665.1"
                     /translation="MKKIITLFFMFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPNFFAEVNELMIITPPLTAATPLE"
     gene            2346..4028
                     /locus_tag="KLC54_001295"
     CDS             2346..4028
                     /locus_tag="KLC54_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HBD9177666.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGVKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTIFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIICIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSVTGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWATLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIVLIGIWTCIIAFFLQGIIPEVIVK"
     gene            4148..4888
                     /locus_tag="KLC54_001296"
     CDS             4148..4888
                     /locus_tag="KLC54_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HBD9177667.1"
                     /translation="MMKKVYFYATCLGTAAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKV
                     KDFSSRVIELSQYLDEVLKVDYEDKGAPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGERL"
     gene            4885..6324
                     /locus_tag="KLC54_001297"
     CDS             4885..6324
                     /locus_tag="KLC54_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HBD9177668.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANKVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWAVQNFANVLPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            6317..6973
                     /locus_tag="KLC54_001298"
     CDS             6317..6973
                     /locus_tag="KLC54_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HBD9177669.1"
                     /translation="MSKIDEISSKSKASILEHLKKAYKETDFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYGFKSMIYGADLNLDLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCVVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIIIY
                     "
BASE COUNT         2379 a         1084 c         1256 g         2343 t
ORIGIN      
        1 aaattatagt ttttatttta tgttgtttta tgactttttt tctttatgca tgttcttcta
       61 aatttgaaaa tgtaaatcct ttggggcgtt catttggaga atttgaagat actgatcctt
      121 taaaactagg acttgaacct acttttccta ccaatcaaga aattccaagt ttaattagcg
      181 gtgctgattt agtacctatt actcctatta ccccaccttt aactagaaca agcaatagtg
      241 ccaacaataa tgcagtaaat gggatcaatc ctcgctttaa agacgaagct tttaatgatg
      301 ttttaatttt tgaaaatcgc cctgcggttt ctgatttttt aaccatttta ggccctagcg
      361 gagcagcttt aacggtttgg gctttagcac aaggaaattg gatttggggc tatactttaa
      421 tcgatagtaa aggatttggc gatgctagag tttggcaact tttgctttat cctaatgatt
      481 ttgcaatgat taaaaatgcc aaaaccaata cttgtcttaa tgcttatggt aatggaattg
      541 tccattatcc ttgcgatgca agcaatcacg cacaaatgtg gaaacttatc cctatgagca
      601 atacagcggt tcaaattaaa aatttaggaa atggaaaatg catacaagca cctattacaa
      661 atctttatgg tgattttcac aaggttttta aaatttttac cgtagagtgt gcaaaaaaag
      721 ataattttga tcaacaatgg tttttaacca ctccgccttt taccgcaaaa cctttatatc
      781 gccaaggaga ggtacgatga aaaaaattat atgtttattt ttatctttta accttgcttt
      841 tgcaaattta gaaaatttta atgttggcac ttggaatttg caaggctcat ccgcagccac
      901 agaaagcaaa tggagtgtta gcgtaagaca acttgtaagt ggagcaaacc ccttagatat
      961 cttaatgata caagaagcag gaactttacc aagaacagcc actccaacag gacgccatgt
     1021 gcaacaaggt ggaacaccta ttgatgaata tgagtggaat ttgggaactc tttcaaggcc
     1081 tgatagggtt tttatttatt attctcgcgt tgatgtagga gctaatcgtg taaatttagc
     1141 tatagtttca agaacgcaag ctgaagaagt gattgtttta cctccaccta ctacagtttc
     1201 aagacctatt ataggaattc gcaatggaaa tgatgctttt ttcaatatcc atgctttagc
     1261 caatggagga acagatgtag gagcaattat cacagctgta gatgcacatt ttgcaaatat
     1321 gcctcaagtt aactggatga tagcagggga ttttaaccgt gatccttcta ctataacaag
     1381 tacagtggat agagaattag caaatagaat tagagtggtt tttccaacta gtgcaactca
     1441 agcaagcgga gggactcttg attatgcaat tacaggaaat tcaaacagac aacaaaccta
     1501 tactccaccg cttttagctg cgattttaat gcttgcaagt ttaagatctc atatagtttc
     1561 ggatcatttt ccagtaaatt ttagaaaatt ttaggacatt taatatgaaa aaaattatta
     1621 ctttgttttt tatgtttata actttagcct ttgcaactcc tactggagat ttgaaagatt
     1681 ttaccgaaat ggtttctata agaagcttag aaacgggaat ttttttaagc gcctttaggg
     1741 atacctcaaa agatcctatt gatcaaaatt ggaatattaa agaaattgtt ttaagcgacg
     1801 agttaaaaca aaaagataaa ttagctgatg aacttccttt tggttatgtg caatttacaa
     1861 atccaaagga aagcgatctt tgtttggcta tcttagaaga tggaaccttt ggagcaaaat
     1921 cttgtcaaga tgatctaaaa gatggtaaat tagaaactgt attttctata atgccaacaa
     1981 caacttcagc tgtgcaaatt cgttctttag ttttggaatc tgatgaatgt atagtaactt
     2041 tttttaatcc aaatattcct atacaaaaac gctttggaat agccccttgc accctagatc
     2101 ctaatttttt tgctgaagta aatgaactaa tgattataac cccaccttta acagctgcta
     2161 cccctttaga ataagatttt tatcttgttc tatttttata tttatttaat atttatgata
     2221 ttactaaaat acacaaaata attaataaca atacaatgta atttactttg ctctataatt
     2281 tttttatttt aatttaattt tttgttacaa taaatttata cataataatt atcaaggagg
     2341 aaaaattgga acaaatttta acatggcaac aaatttatga ccctttttca aacatttggc
     2401 taagtgcttt agtagcattt ttacctatac tatgtttttt agtttgttta gttgttttaa
     2461 aacttaaagg ctatcaagca ggttttttaa ctgttatact tgctactttg gtagctttat
     2521 ttgcctataa aatgccttgg aatttggtgg gtgcaagttt tattcaaggc tttacaaatg
     2581 gtatgtggcc tatagcttgg attatcatcg cggcaatctt tctttacaaa ctttctatca
     2641 agtcaggttc ttttgaaatc attaaaaaaa gcgtgatgag tattactcca gatcatagaa
     2701 ttcaagtgat tttaataggt ttttgttttg gttcattttt agagggtgct ataggttttg
     2761 gtggtcctgt ggctataact gctgcacttt tagtaggact tggcttgcgt cctttgcaag
     2821 ctgcagggct ttgtcttatc gcaaatactg ctcctgttgc ttttggtgcg gtgggaattc
     2881 ctattattgc tatggcaaat cttgttggca tagaacagca ttcagtttct gccatggtag
     2941 gtagaatgct agttccttta agccttacta tacctttttt catagttttt ttaatggatg
     3001 gatttaaagg cgttaaagaa acttttccag ctattttagt tgcggcgcta agttttacaa
     3061 ctactcaatt tttaagctca aatcacttag gagcggaatt gcctgatatt atttcagctg
     3121 tggtttcttt agcggttaca actatatttt taaaattttg gaaaccaaaa aatattttta
     3181 gatttgataa tgaaagcaat ttcactcaag ataacaccct aagttttaat caaattttaa
     3241 aagcttggtc accttttatt ttactcatta tttgtattat catttggaca caaccttggt
     3301 ttaaagctct ttttgataaa gatggtattt taagttatac aagcattact ttacaattta
     3361 gtaatatcac aactggaatt ttaagtcctt cagttactgg cataggagaa gctaagcctt
     3421 tatctttggc cttgggtgta gatttaatca atggaaaaac cgtagctcaa gcaggaacag
     3481 caattttact tgccgctttt ctaactatag ctattttaaa aatcaaagcc gaagatgctg
     3541 cagaatgctt ttgggctact ttaaaagaaa tggccatacc ttgtatcact ataggtttag
     3601 ttgtggcttt tgctttcatt tctaaaaata gcggtatgag cactacctta gggcttgctt
     3661 ttgcacacac aggcgatgct ttttctttct tttcaccaat cattggttgg ataggggtat
     3721 ttttaacagg ctctgataca agtgctaatt tactttttgg aaccttgcaa caagtaagcg
     3781 ctcaaaaact aggtattagt gaagctttat ttttagcagc taattcagta ggtggagtcg
     3841 ttggaaagat gatcagtccg caaagcattg ctatagcttg cgcggcggtt ggacttgtag
     3901 gaaaagaatc tgatcttttc aaattcacat taaaatattc tgtagctttt attgttttaa
     3961 taggaatttg gacttgcatt atagcttttt tcttacaagg aatcatccct gaagttatag
     4021 tgaaataatt aaaaatttaa gttttatttc aacaaatatt cgtttttaga atatttgttg
     4081 gaaattttac tttgctttta tttttacagg attagaatat ttatcctaaa ttatcccaaa
     4141 aggagagatg atgaaaaagg tgtattttta cgccacatgc ttaggaactg ctgctatgca
     4201 acaaagcgtt ttaaatgcaa taaaactttt aaggcgtgaa ggtattgaag tgatttttaa
     4261 aaaaaatcaa acctgttgtg ctcaaccttc ttttaactca ggttatttcg atgaaagtcg
     4321 tgagattgct ttatataatg tagatttatt tgataaagat tatcccatcg ttgtgccaag
     4381 tggttcttgt gcgggtatga tgagtcatga ctataaagaa ctttttaaaa acagacctga
     4441 attttctaaa gtcaaagatt ttagctctag ggttatagaa ctttcacaat accttgatga
     4501 agttttaaaa gtagattatg aagataaagg tgcacctata aaagtaactt ggcattctaa
     4561 ttgccatgct ttaagagtgc aaaaaagcat acaagcaagc aagaatctta tcaaaaaact
     4621 aaaaaatgta gaattagtag aacttcaata cgaagaagaa tgttgtggtt ttggcggaac
     4681 tttttcagta aaagagcctg aaatttcaaa tgctatggta agaagtaaaa ttaaagatat
     4741 acaaaatagc ggtgcaaaat atctcatcag tggcgatgga ggttgtcttt taaatataga
     4801 tggtaccatg aaaagaatgg gtttagatat aaaaggcata catttatatg actttttact
     4861 taaacgctta gaaggagaaa gactatgagt caaaaaattc ctcacgaaca aatcgttcaa
     4921 attaaactca atgacaagca aatgcaagaa aatttaatga ctgccatgca tactttacaa
     4981 aaaaatagac tcaatgttat tgatgctaga tttaaagact ggcagggttt aagagctaaa
     5041 gctaaacaag ctaaaaacaa tgccttaatg agtttagaag aaaggctttt agaatttgaa
     5101 aaaaatgcta caaaaaatgg cattaaagtg cattgggcaa gtagtgatga agatgcctgt
     5161 gaaatcgtct atgaaatcat gaaagaaaaa aatattacca agcttttaaa aggtaaatct
     5221 atggcaagcg aagaaatagg cctaaatcac tacctagaaa aaaaaggttt aaaagctata
     5281 gaaaccgatc ttggagagct tattttacag cttaatgaag agcctccttt acatatagtt
     5341 gtacctgcta tacatagaaa ccgccatgaa atcggagaaa ttttcaaaga aaaattagga
     5401 gcaaatttag aaaacgatga acctgaaagt ttaaatgcgg tagctagaga acatttaaga
     5461 aaagattttg aaggcttaaa acttggactt agtggggtca attttgccat gtcaagagaa
     5521 ggagcttttt ggcttataga aaatgaagga aacggtagaa tgtgcactac agcacctgat
     5581 attcatatcg cactttgtgg catagaaaaa gtcatggaaa gctttgaaga tgcggctact
     5641 atggtttctt tactcactcc ttcagccaca ggacaattta taccaactta taacaatatc
     5701 attacaggcc ctagaaaaaa tggggattta gatggcccta aagaagtaca tgtgatttta
     5761 tttgatcaca atcgttctaa aatgctagct catgaggatt attacgaagc tttgcgttgt
     5821 attcgatgcg gggcttgtat gaatttttgc cctgtttatg atcaaatcgg cggacatgcc
     5881 tatcaaacca cttatccagg acctatagga gaagtaatca gtcctaatat ttttggcata
     5941 gatcatacag gagatatttt gaatttctgt tcactttgtg ggcgttgttc tgaagtttgt
     6001 ccagtgcaaa ttcctttggc tgatcttatt cgcaaattaa gatgcgataa aataggacaa
     6061 ggtaaaaatc cacctttagg agcaaacaaa gttcatcaca atgccctaga agcctttgct
     6121 tttaaacaat ttaaaaatat cgcaaccaat ggcgataaat ggcgtttttc actttcaaaa
     6181 gcacattatt tcaactgggc agtgcaaaat ttcgcaaacg ttttgcctgt gattaaaaaa
     6241 tggtacgctt ttaaagaatt acctcaaatt aaaatggatc tttataaaga agtgcaaaaa
     6301 ctagaaggag taagctatga gtaaaatcga tgaaatttca agcaaaagta aagcaagtat
     6361 tttagaacat cttaaaaaag cttacaaaga aacagacttt acgcgtattg aaagtataga
     6421 tcctgtagaa catatccaaa ccacccaaga tatgcttaca gaaatgaagc aaaaaatgag
     6481 cgataacaaa tacatcgttg aaaatgctac aaaagatacc ttagaagaaa aaatcaatga
     6541 aattgtcgca aaatatggct ttaaaagtat gatttatggg gcggatttaa atttagattt
     6601 agaacagatc aaggcagaaa agaagatttg ctttgataaa gaaatcgaaa atctaagatc
     6661 tgaagttttt catagtgatt tttccatcat tcacgcaaga gcaggggtaa gctctcatgg
     6721 agttgcactt ataccttcaa gtaaaaccca acctagaatg ctaagccttg cacctaaact
     6781 ttgcgtagta ttacttaaaa aagaaaatgt tgttaaaagt cttagcgaag ctttaaattt
     6841 agtaaaaaaa gaaaatgaaa ttttacctac taatatctta tttatagcag ggccttcaag
     6901 aacagcagat atagaactta tcactgtttt tggtgttcat gggccacaaa ttgcacatat
     6961 tattatttac tgattctata ctagaatcag taagtcttaa tttttaatat taattatata
     7021 tattttttat actatacaaa tataaataaa ataaataatt tc
//
LOCUS       DAEDTT010000081         6808 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.081, whole genome shotgun sequence.
ACCESSION   DAEDTT010000081 DAEDTT010000000
VERSION     DAEDTT010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6808)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6808)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6808
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.081"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(10..435)
                     /locus_tag="KLC54_001299"
     CDS             complement(10..435)
                     /locus_tag="KLC54_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HBD9177670.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSDDEHEVNPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKMIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(435..1016)
                     /locus_tag="KLC54_001300"
     CDS             complement(435..1016)
                     /locus_tag="KLC54_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HBD9177671.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKVEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(1013..1756)
                     /locus_tag="KLC54_001301"
     CDS             complement(1013..1756)
                     /locus_tag="KLC54_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HBD9177672.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQDFDPIVVITGGEPLIHYENP
                     EFIKFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(1759..2721)
                     /gene="moaA"
                     /locus_tag="KLC54_001302"
     CDS             complement(1759..2721)
                     /gene="moaA"
                     /locus_tag="KLC54_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HBD9177673.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMISDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDVLDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(2734..3249)
                     /locus_tag="KLC54_001303"
     CDS             complement(2734..3249)
                     /locus_tag="KLC54_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177674.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(3246..3743)
                     /locus_tag="KLC54_001304"
     CDS             complement(3246..3743)
                     /locus_tag="KLC54_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177675.1"
                     /translation="MELTLFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(3734..4618)
                     /locus_tag="KLC54_001305"
     CDS             complement(3734..4618)
                     /locus_tag="KLC54_001305"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HBD9177676.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLFVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKVGLHSIPAKFGSKATLFISAF
                     CHILAVLFWLLFVWEVWGIALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            4689..5558
                     /gene="miaA"
                     /locus_tag="KLC54_001306"
     CDS             4689..5558
                     /gene="miaA"
                     /locus_tag="KLC54_001306"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HBD9177677.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFDAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIKTRTKEMLDNGLLDEAKILFSKFD
                     HKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALAILRMKFSIEK"
     gene            complement(5544..6107)
                     /locus_tag="KLC54_001307"
     CDS             complement(5544..6107)
                     /locus_tag="KLC54_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HBD9177678.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNVNLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
     gene            6255..6329
                     /locus_tag="KLC54_001308"
     tRNA            6255..6329
                     /locus_tag="KLC54_001308"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6288..6290,aa:Glu,seq:ttc)
     gene            complement(6465..6647)
                     /locus_tag="KLC54_001309"
     CDS             complement(6465..6647)
                     /locus_tag="KLC54_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177679.1"
                     /translation="MKKVVLISALLGAFAANVFAANTPSDVNQTHTKAHHSKAKADKK
                     HEAKTHKKTKEQTPAQ"
BASE COUNT         2407 a         1008 c          846 g         2547 t
ORIGIN      
        1 tttgatccat tattttcctt tgtttataaa atcagctaaa ttttgaattt gttcatcact
       61 taaaaaactg tgatttttat cttttatcat ttttattttt tgtataaaaa ttttattgct
      121 caaggtttta atggccgtgc tgtttttagg ttttaattct cctttttctc catgacaagt
      181 ggcgcatttt tgtttatata aagagttgat aatactagga ttgacttcat gttcatcatc
      241 tgaactttgt gcttcatcat ctacaggtaa aggcaggttg gagtcactta attctgtttt
      301 ttcatcgttt tgttctattt ggactacttc ttgatctgta ttttgagtct tagaaatatt
      361 tttttcatca ttagaacagg cagataaaac taataaaaaa aaacttaagg caattaaaat
      421 tttagctttt tgcattaaat ctcctttgga tttataaaaa tttcttcatt ttttaatttg
      481 ttataaaaat ctatatcatt ccattctact ttaatgccat tggaaaattc tatgtcttga
      541 agtgaaattt ttggcattag ctcactatag gcatcttctc taaaaccttg tgcatagcct
      601 gttcttgttt catgaacaat gatactttgt aaagtcactc cttgttctcc atttaccatt
      661 tttgtttgtt ttaataaagc atctataagt atgaaaaata cacgacaaaa attttcagca
      721 cttacattaa caggcaggca aatccaacga cttgaatatt ttttcatttc ttctaaatat
      781 tttgcgtcat catatttaaa aagagttata gcatgatcaa aactatcaat aatttggcgt
      841 atataggttt ttaaaagtcc aaaatcatag accattccag cattatctaa atatttgctt
      901 tcaagtaaaa cttcaacttt gtaagaatgt ccatgaatgc tacttttgca acgcttagaa
      961 gaacaaaatc taacaatgtg tgcgttttca aattcaaata attttcttat aatcatacac
     1021 cctctttatc gttccaaaga cgaatatgaa ttctatcaga ataattataa ccattcttaa
     1081 tacaaaattc agcaattttt tgagcatttt ttttaaggtt ttgctcattt tcacccatag
     1141 gcatacaaaa aatttgattt ggagcttctt ttagaatttc attgatttct aaaaatgaat
     1201 tatcaagggt attggcatct aaaacaaatt tataaaaact atcttttgcg taatttttaa
     1261 atgcttttaa agctttaaaa tttaatcgtt tatctttttt tatcccacta ttttggagtt
     1321 taacgcttaa agcaaaaata cattctttgt aaaaaggata tctatcaaaa tcaatttcta
     1381 tacttccatt gctttcaaag tgtatttcaa atttattttt taataacatt tggataaatt
     1441 ttataaattc aggattttca taatggatta atggctctcc acctgtgata acaactatag
     1501 gatcaaagtc ttgttttaat tttatcactc tttttaaaag ttcattagca tttaaagttt
     1561 cataactttc tttaaaatct tttgtgaaaa cagctcttat cgtgtcacat ccaatgagag
     1621 ttttatcgtt ttttgatatt tttacattaa aacctaaaca gttgaaattg caaccagcaa
     1681 aacgcataaa aatagctaat tttccattat atttgccttc tccttgaatg cttaagaaac
     1741 tttcaacaag ttgcaaaatt aacctccagt ttgataaaaa gcacgagatg aggtttcatt
     1801 atcaacaaca ctccatttat ttttttctgg tttatttctt aatacttctt gtaatatttc
     1861 tacagcggct ttaatatcac cttttcgaac cgcttctttt atgcttaatg cttcatcaaa
     1921 ataaaggcaa ggtattaaca agccttcagc acttaagcgt atgcgattgc aagaatcgca
     1981 aaattcatgg ctatgaggat ctataattcc aaattcataa tcatctgcct tgtaaatact
     2041 cacaggtgct ttttcatctt tttttataag ttgaatttga tatttttgac tcaaaatttg
     2101 tataatttca tctcttttta atccttgtaa tttaccataa gcatgagtat tttccataaa
     2161 ttctataaag cgaatttgag ctttttttga ttttgcaaat tccaaaagag atatcagttc
     2221 atcatcgttt aaatttttaa gagctacagt attaagtttt actttcaaat ctagatttaa
     2281 agcttcatca attccagata aaacactatc taatacatct ttttgcgcaa gagtttttgc
     2341 ttttttgtga tctagggtat caagtgaaat attaagtcgt ttaagtccag cattttttag
     2401 gtctttagca aagtctttta gtaaaaatcc atttgtagtt atagcaaggt caatatcgct
     2461 tttataatcg ctaatcattt ttataaaaat acttaaatct tttcttaata aaggttctcc
     2521 acctgttata cggatttttt caattccttc gtctatagct gctttaacaa ataaaaaaag
     2581 ttcttcgaag cttaataaat tttcttttgg ctgataatcg aaaggaattt ttggcataca
     2641 ataaaggcag cgaaagttac atctttgtgt aactgaaatt ctaagataat ttatctttct
     2701 accgaattga tctataagca tttattttcc attctatttt attaatttct taaattttaa
     2761 gacaagttct acatttccag tgccaatgcg taaatcttta gcgatttgtt ctatgctttt
     2821 tccttctttg aaaagatttt ctattttttg ttcttctgta tcgtaatttg gtgtaagttt
     2881 agccatgctt tgtgcttttt gttccaaatt taaaagacga ttttgttgtt cattttgaaa
     2941 atcttctatg atatgttcca tagtttttag tgttcttaaa acaggagtga tttttgaact
     3001 gatttgttta tcaagttcaa tcataatttc ttcttttaaa agagaggttt tatagtcttc
     3061 atcctcttcg ctatcatctt taactcctaa ttctttacga aaataatgaa gttctttggt
     3121 aatatcttct atcacatttt gaagttttgc tatttttgca ttattttctc tttctttgat
     3181 attcatatag gctagcattg caattaaaag cacaattata aaaactaaat aaagtacatc
     3241 atcactcatt cttggccttt cttatttctt atcatatttc tttgaatttc aacaacaaaa
     3301 gcatcaaaag ccattttgtc ttcaggctta attttgataa tttttgccaa tgtttgactt
     3361 tgagctttga taaaaatagc tattttttga ttatttaaat caaatcttaa ataatattct
     3421 ttatcttctt ctaaaatagt atccaaaaaa tttagatatt caaaatttaa agattctatt
     3481 accccttttt gcttaagcgg tataagttct ttatttttat ctaaagaatt ttcaagcctt
     3541 aaaatatctt cttttaggct taaaagaaga tcaaaaataa ttttttcacc ctcatcaaaa
     3601 tcaatgcgta aagcaagttt tttccatttt aaaatttgag aaattgctcc aagttttagg
     3661 tattctccaa gaaaacggtt attttctatt tcacaacatt ctaaatgagc ttcaaatcct
     3721 gctttaaaaa gtgttaattc cataataaat caatccaaat aaaaataaaa aagataatac
     3781 ttaaataacc atttagagta aaaaatgctc tatcaatatg agcaaaattc ttgtgaacaa
     3841 ttttatgttc caaggctaaa ataataccgc ttataattac cccaataagt gctatttttc
     3901 caagtgctat accccaaact tcccatacaa aaagaagcca aaataatacc gctaaaatat
     3961 gacaaaaagc tgatataaat aaagtagcct ttgagccaaa tttagcagga atagagtgaa
     4021 gtcctacttt tttatcatat tccatatctt gcaaagaata aagcagatca aacccagctg
     4081 tccaaaaagt tacacctaaa cataaaataa cgctataaat gtgaatttca cccataatta
     4141 taacacttcc tgcaataggc gcaagtccta aacaaaatcc caaaactaaa tgcgctaaag
     4201 aactaaagcg cttaaaagct gaataaatag ccaatacaaa aagcacagga aaagacaaat
     4261 aaaaggccaa ggtattaata aaataagaac atgatataaa aataagtgca ttaataataa
     4321 taaaaatcca tacgcttttt ctacctattt ttccactgac attagggcga tttgcacaac
     4381 gaggattatc cttatctata tcttcatcca ttaaacgatt tgtagccatg gcaaaatttc
     4441 ttgcacttac cgcacaaata atacctaaaa tcaatgcctt aaaaccaaac caagcagtgt
     4501 catttgcaag ttttgatgct acaatcatag aggaaaataa aaaaggcaaa gcaaaaatag
     4561 aatgcttaaa tactacaagt tctaaaatat ctttaaattt tatccagaat gtgttcattt
     4621 ttctacttta aaatattttt tgctatgatt ttactaaaat ttttataaat tttaggataa
     4681 atattaaaat gttttttgaa atagcattaa taggaacaac cgcgagtgga aaaacataca
     4741 tagccaatac tttagcaaga gaatttgatg ctgttgtttt aagtcttgat agtctttgtg
     4801 tttataaaga gattaatata gcaagtgcca agccttcaca agatgatctt gcgagtataa
     4861 aatactttgg ggtaaattta ttgagcgtga atgaacattt taatgttgag ttattcataa
     4921 gagaatatca aaaagcaaaa gaatttgctt tagctagaaa tttacctcta attatagtag
     4981 gtggaactgg attttattta aaaactatga tagatggttt aagtgaaaaa accttagagt
     5041 caaagagttc tttaaataac gatgaaattt atgctctttt attaaatatt gatccaaact
     5101 ataaaataga aaaaaatgat acttatagat taaaaaaatg gctgggtatt tatgaacaaa
     5161 caagagaaat tcctagtgaa tttttaaaaa gaacacaaaa aactggggtg cttaaagata
     5221 tagaaattta tgagcttgca tgggataaag aaattttaaa aaaacgtatt aaaactagaa
     5281 caaaagaaat gcttgataat ggacttttag atgaagcaaa aattcttttt tctaaatttg
     5341 atcataaact taaagcatta aattctatag gtttgaaaga gtgtaaagaa tatttagatg
     5401 gagaaatttc ctttaaagag cttgaaaatt taatcacgat acatactaca caacttgcca
     5461 aaagacaaag aacttttaat aaaaaatttc aaagtaaagc cttggaattt gataaagctt
     5521 tagctatttt aagaatgaaa ttttcaatcg aaaaataaat gttctattag aatttttact
     5581 cctaatataa ttaaaaccaa tccgcctaaa agttcagctt tatttttaag ataaattcca
     5641 aatttatttc ctatttttag agcaatgatg cataaaatga aggtgataat acctattaaa
     5701 aatatagcta ataataaatt tacatttaaa aatgcaaaac tcacaccaac tgctagtgca
     5761 tcgatactcg tagcaattgc taaagctagc atggttttaa agccaaattg attggcatta
     5821 ctatcgcaat tttcattttc caatgactct ttgatcattt ttaatcctat taaagaaagt
     5881 aaaataaaag ctatccaatg atcaatactc gcaataaaag atgcaaaagt tatgcctata
     5941 aaataaccaa tagttggcat caaggcttga aatccaccaa aataaattcc aacaataaga
     6001 taatgtttta aatgtagttt tttaacacta aaacctttgc atagtgatac agcaaaagca
     6061 tccattccta aagcacagga taaaaaaata agactataaa aatccataat aaatcctaaa
     6121 attttataaa aaattgaaga tgaaattata atcaaacaaa gataaaaatc acataatttt
     6181 gatatattta attaaatttt aagaaataaa tatatataat tcaatttcat ttttattttt
     6241 tactccttaa aagtggccca ttcgtctagc ggttaggaca tcgccctttc acggcggtaa
     6301 cacgagttcg agtctcgtat gggtcaccac tttttaattt ttcttttaaa ataacgattt
     6361 tttcattttt tctattaaaa tttaataaat attaataatt tattttgtag aatacgaata
     6421 gcttttgata taagtctatt atagacttat atcaaggctg ggcattattg agctggtgtt
     6481 tgctcttttg tttttttgtg agttttagct tcatgttttt tatcagcttt agcttttgaa
     6541 tgatgagctt ttgtatgtgt ttgattcaca tcgcttggag tattagctgc aaaaacatta
     6601 gctgcgaaag cacctagtaa tgctgagatt agtacaactt ttttcatatt ttcctcctta
     6661 tgaataattt ttagttgcaa attaattgta attattaaaa atcaacaaat agatattttt
     6721 tgtaaaaata tttcaaaaaa atataatttt tttatatata tttaaattat tattaaaata
     6781 tattataaat gtatcttatt ttatttag
//
LOCUS       DAEDTT010000082         6771 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.082, whole genome shotgun sequence.
ACCESSION   DAEDTT010000082 DAEDTT010000000
VERSION     DAEDTT010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6771
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.082"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..881)
                     /locus_tag="KLC54_001310"
     CDS             complement(<1..881)
                     /locus_tag="KLC54_001310"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HBD9177680.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAHIEDPIGKISKGWKNYAGLNIQ
                     KISIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIRQDKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALAYFNNSNLEV"
     gene            952..1887
                     /locus_tag="KLC54_001311"
     CDS             952..1887
                     /locus_tag="KLC54_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HBD9177681.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLANEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDENK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            2068..3396
                     /locus_tag="KLC54_001312"
     CDS             2068..3396
                     /locus_tag="KLC54_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HBD9177682.1"
                     /translation="MSSIFSTLSPFRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLG
                     SDALAALALIIPFIMMSFALADMIAIGSAVQISMYLGLGKKNLARKIFSSSMLIIFII
                     SCFIGILEYFLGPVLIDCLNVSDEIKTMAKECMFVFALFAPFTMLSFALDNYLRICGK
                     TAYSMVMNVIIALSNIVLDFIFIVELGWGLFSAALATCLGLVLGGIFGIFPFLFQNLE
                     LKISSLYMNLKIFKNILYNGSSEFFGNISGSLYSIFANFVLLKISDTQAVAAFSIVLY
                     IDSFIIMLIIAMGDAMQPALSYNYAKKDFSRIKAIIKVVFFAGGFLSLFSIVLILIFG
                     ENLITLFTKENNQEFKTFAYTALMLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLSLA
                     QNLFIPLFFLLFLSYFIGLNGVWLSPFFAEFCVLILAWIFLKRIFKDLSL"
     gene            complement(3444..4373)
                     /locus_tag="KLC54_001313"
     CDS             complement(3444..4373)
                     /locus_tag="KLC54_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HBD9177683.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSYNADNSDSSFIPFIGVELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYATGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEFELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAVGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIVLTGIGYKF"
     gene            4527..5903
                     /locus_tag="KLC54_001314"
     CDS             4527..5903
                     /locus_tag="KLC54_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HBD9177684.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVIACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELREKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKILRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            5963..6564
                     /locus_tag="KLC54_001315"
                     /pseudo
     CDS             5963..6564
                     /locus_tag="KLC54_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            6555..6761
                     /locus_tag="KLC54_001316"
     CDS             6555..6761
                     /locus_tag="KLC54_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177685.1"
                     /translation="MGIILGILNLIAGFVAIVLMCSLYFIVFMVFVGMAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
BASE COUNT         2264 a          873 c         1149 g         2485 t
ORIGIN      
        1 acttctaaat ttgagttgtt aaaataagcc aaagcgtttt catgggcgtg aatttttacc
       61 ttaaattttt caaattcagg gattaaaaga cttataaaat ttttagcaat tttttcatgg
      121 attaaaagcg tttctaaagc gttacaaaca cttactcttt gacactttgc attaaggatt
      181 atttttaaag ccatatctaa gttagcactt tgatctacaa aagcatggca caagccttta
      241 tcttgcctta tgagaggaat tttagtattg tttgcaattt cttgtatcat gtttgaactt
      301 ccgcgaggta tgatcacatc gattaaatca tcaaaagcta gaatttgcaa gatctcatct
      361 ctttgagtaa acatagcaaa acaatcttgc aaatcaaatt ccttaagtac tttattaaca
      421 agagtaaata tagcctcatt tgtaaatttt gcttcacttc cacctttaaa tacacaagca
      481 ttggaacttt ttatcattaa agctgcgatt tcagcgctaa gactaggcct tgcttcgtaa
      541 ataacacaaa tgagtcctaa aggaatgctt attttttgta tgtttaaacc cgcataattt
      601 ttccagcctt tagaaatttt gcctatagga tcttcgatgt gagcgatttt ttctaggcct
      661 tcacaaagag ctaaaatacg tttttcatct aataaaagcc tatctttcat tgctccgctt
      721 tttgtgaaat ttgccatatc ttttttattt gcttctagga taattttgaa attttctctt
      781 aaaatttgag ctaattttag aataattttt tctttatctt tgggtgttaa gttaagtagt
      841 ttttgagaat ttttcttaat attttcaagc aaatttcgca tttttaatcc tttatttaca
      901 aaaaacttga taaattatac aaaaaaattt agaattgaaa ggtaaatata aatgaaaaaa
      961 atagatttaa tcgtagtagg tgcaggtcca acgggcatag gctgtgcggt tgaagccaag
     1021 cttaaaaaca aagaagtttt gatactagaa aaatcaaata acatttgtca aactttaatg
     1081 caattttata aggatggcaa aagagtagat aaagcttata agggatgtga aggaaccaat
     1141 cacggacatg ttccttttga agatggcacc aaagaaagca ctatagaaac ttttcaaaac
     1201 gctttaaaag agcacaatat agaagttgaa tttggttctg aagttgagag tgttaaaaat
     1261 gaaaatggag tttttttagt aagcacagct aaaggtgttt atgagtgtaa aaacattatt
     1321 gttgctatag gtagaatggg taaacctaat aaacctgatt acaaacttcc tatgacttta
     1381 acaaaaatca ttaattttaa tgccaattca gttttagcaa atgaaaaaat tcttgttgta
     1441 ggtggtggaa attcagcagc agaatacgct gtggatttgg ctaattcaaa tcaagttagc
     1501 ctttgttatc gtaaaaaaga attcacaaga ttaaatgata taaatcttaa agatattcat
     1561 gaagctggaa attcgggtaa ggtagagtta aaactaggaa ttgacattaa tgaagtagag
     1621 gatgataatg gcaaggctaa ggtaaatttt accgatggta caagcgatat ttatgataga
     1681 atcatttatg ctattggtgg ttctactcca cttgattttt tacaaaaatg tgggattaat
     1741 gttgatgata aaggcgtgcc tttaatggat gaaaataaac aaagcaatgt taaaggcatc
     1801 tttgtagcag gagatattgc tactaaaaat ggagcaagta tagttacagg gttaaatgac
     1861 gctgtgaaaa ttctttctgt gctttaaaat ttagcctttg ggctaaattt ttattttagt
     1921 ttaatctaga aaattcatat gcaaaataaa ataaatatta ataaacttat tgcgaaatta
     1981 ctttatttaa attcttacat actaggactt ttggcatttt attagcggtt taaaatattt
     2041 ttaattttaa atattttaag gattattatg tcaagtattt ttagcacctt aagccctttt
     2101 aggctttttg taaaatgtgc cgtgccaaat gttataagca tggcttttat ttctttttat
     2161 tatatagttg atggaatttt tgttggaaaa tatctaggaa gtgatgcttt agcggcacta
     2221 gccttgatta ttccctttat catgatgtct tttgctttgg ctgatatgat agctatagga
     2281 tcagcagtgc aaatttcgat gtatttaggt ttaggcaaga agaatttagc tagaaagata
     2341 tttagctcaa gtatgttgat tatttttata atctcttgtt ttattggaat tttagagtat
     2401 tttttaggtc ctgttttgat tgattgttta aatgttagcg atgagattaa aacgatggct
     2461 aaagaatgta tgtttgtttt tgctttgttt gcacccttta ctatgctttc ttttgctttg
     2521 gataattatt taagaatttg cggaaaaact gcttatagta tggtaatgaa tgtgattata
     2581 gcattgagca atatagtgct tgattttatt tttatagtcg agttgggttg gggcttattt
     2641 tcagctgctc ttgcaacttg tttgggactt gttttaggtg gtatttttgg aatttttcct
     2701 ttcttgtttc aaaatttaga gcttaaaatt tcgagcctat atatgaattt aaaaattttt
     2761 aaaaatattc tttataacgg aagcagtgag ttttttggca atatttcagg atctttatat
     2821 agtatttttg cgaattttgt tttattaaaa atttctgata ctcaagccgt ggcagccttt
     2881 tctatagttt tatatattga tagttttatt ataatgctta ttattgctat gggtgatgca
     2941 atgcagcctg cgcttagtta caactatgct aaaaaagatt tttcaagaat caaagctatt
     3001 ataaaagtgg tattttttgc agggggattt ttatctttat tctctatagt gcttatattg
     3061 atatttggag aaaatttaat cacgcttttt acaaaagaaa acaatcaaga atttaaaact
     3121 tttgcttata cagctttgat gctttttgct tttaattatt tttttgcatg gtttaatgtt
     3181 ttaagtggtt cttttttgac agcttttaat aaggcaagct tttctttggt tttaagtttg
     3241 gcgcaaaatt tatttatacc tttgttcttt cttttgtttt tatcttattt tataggttta
     3301 aatggagtat ggctaagtcc attttttgct gaattttgtg ttttgatttt agcttggatt
     3361 tttcttaaaa gaatttttaa agatctatct ttataggaga tagatctttt ttaaatttta
     3421 tcaaaggagc ttttttataa tttttagaat ttatatccta taccagttag gacaatttga
     3481 taggtttcat cataaaatcc tatatcacta tttctttttt ctataccata atttgcaaaa
     3541 ccataaagtc cgttataacc caaaaattga tttttaacaa cttttagatt aagcttaact
     3601 atattaccat cttgtttttt atggaagata ggatcagttc ctactgcttc atatttgcta
     3661 agatttaaat ttggagtgaa gatgtaatca ttagcaaaag ccaaatttgt tcctatgcta
     3721 aaaccatatc ttgaatagct ttgagctttt ccgtctgcat cattgtaatc ataatttaac
     3781 cctaggttta ataagctata attatagttt aattcaaatt cgtgataata cccctccctt
     3841 tttaaagagc tttgtgcgat agtgtcttta tcatatttgt ttttgctaaa taaatatgaa
     3901 gtggtaaatt tcccaaaatc actttcataa agttgagaga ttttaaaacc atatctatca
     3961 acatcagttt cttctctatt tcctgttgca taaggatttg cataagcttt ttctcttaaa
     4021 gaggaaatca cagaaaaaga agtgctaaaa cgctctaaat aagctctttc gtagcctaaa
     4081 gctataccgc tgatatctct tccattgtag tttttaataa aaattctatc attatctata
     4141 aggttgccat agtaaagttc tacaccgata aaaggaatga aagaggagtc tgaattatca
     4201 gcattgtaac tgcttagata atcactgttt gccaaggttg aaatattact tttaatatcc
     4261 cttgcaccca cacctatgct taaatttcca ctaaaacctt cttgaaattc tacagccgta
     4321 gctgattggg ttaaaatgga ggctaaaaca caggaaaata aatatttttt caaatgttct
     4381 ccttgaaatg tttgttgttt gtaattaaat tacatttata attgtaacta atattacatt
     4441 aaatatttat aaaaaaatta agttttataa tttaagtttt tttagataga atttttagaa
     4501 ttaatttata tttataagga aatttagtgc agcaagagta ttatgacttg gatttagaac
     4561 gagctatttt aagcagttgt atcatgagtg aagaagctta tgctagtata gcaggtgata
     4621 ttagcccaaa agattttagt cttaaagctc accaagatat ttttaaagcg gttatagctt
     4681 gtagtaataa caaagagcct atttctgtaa gttttttaag aaaacataaa aaaatagatg
     4741 agcaaatttt agcagaaatt cttgctactc cttctatgat agatttgcct gcttatgtaa
     4801 atgaacttcg cgaaaagtct gtaaaaagac agctcttgag ttttgcgcat cttttgccaa
     4861 ctcgtatcaa tgaagatcgt gctgtaagtg aaatcgcaga tgaaattggt aaagaaattt
     4921 ttagcattac aaatcgtgtg aattctagag atattaaaga tgttgatatg gtaatatcag
     4981 aactttttga agaatttaaa aagcaaaaaa ctttagaaaa taaaggtatt atagggcttg
     5041 atacaggttt tgaaggtcta aataaaatga caaaaggttt taaagggggt gaacttataa
     5101 taatcgctgc gcgcccaggt atgggaaaga caactctttg tttaaatttc attgacaaga
     5161 ttttaagaca aaaaaaaggc gtggctttgt tttctcttga aatgcctgca actcaaatca
     5221 tgcaaagaat gctatcttcc aaaacttcca ttcctttgca aaaaatttta actgcagatt
     5281 taaacgatga tgaatgggag cgtttaggag atgcttgtaa tgattatagt caaaagaaat
     5341 tatatattta cgatagtggt tatgcaacta tcgctgatgt aagggctatt ttaaggcgtt
     5401 taaaatctca agatgaaagt ataggacttt gtgtgattga ctatatagga cttatgatga
     5461 gtaattcaaa ttttaatgat agacatttgc aagttagtga aatttcaaga ggacttaagc
     5521 ttttggctag ggagcttgat atgcctatta tcgcactttc acaacttaat cgtggcttag
     5581 agcaaagggc aaataagcgt cctttgatga gtgatttgcg agaaagtgga gctatagagc
     5641 aagatgcgga tgctattttg tttgtatatc gcgatgaggt ttatagagaa caagaagaaa
     5701 aagaaagaga gaataaagct aaagctgaag gtaaagctta tcaaaggctt tttataccaa
     5761 atcctatgca agaaaatgct gaaattattg ttggaaaaaa tagaaatggg cctgttggaa
     5821 ctatagaagt tgtattttta aaagaaaaat cttgttttgt agataaacct ataggctatg
     5881 aaactactga atttacaggc tagctttaat caaataattt aatattttaa agttattttt
     5941 tacgacacaa cctgtcgcaa gagtgtttta tactttcttt gttattttaa aacaaggaga
     6001 gaaaatgtta aaacaaatcg catttggtgg tatagctctt acagctacag gatatggcat
     6061 aaaaaattat acgaaaaatt atccaagcca gaaagaaaat ttgatacaca tgctattgtt
     6121 ccaagctgta aggatatgat caataccgaa gaatacaaac ttaaaagaga gcttgaagtc
     6181 gaacaaaaga aaaatcaaat tcaagaattt ctttgcgaat gcatggagtg ttatagcggc
     6241 ttttcaaaat attttaattc taaggaattt ttagaatttg agcaaaattt tacctctaaa
     6301 aataatcata aaacagaatt tcttttgtca tcttataaag atcaaatgat aaaagtgatc
     6361 gactatgcta aaaaatttga atgcttaagt gcttttttgg aaacacaaag cgaaaaaaat
     6421 gacttagcgg ttgtaaaaat gataagcgaa agtatggaga gaaaaacaca gagattttat
     6481 ctgcaaacaa aatttcaaac ttttcctcag tatatttttc cttctgtgtg gagttctcct
     6541 atgtggaata aacaatggga ataatacttg gaattttaaa tcttatagcc ggctttgttg
     6601 ctatagtgtt gatgtgtagt ttatatttta tagtgtttat ggtttttgtt ggtatggcga
     6661 tacttatttt tctttctatg caaccttatc cttacaatat aatattttgt gctatatatt
     6721 taatcacaat tttagcgcta gtgctatggc gtaaaactta aaaatttcac t
//
LOCUS       DAEDTT010000083         6743 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.083, whole genome shotgun sequence.
ACCESSION   DAEDTT010000083 DAEDTT010000000
VERSION     DAEDTT010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6743
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.083"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..172)
                     /locus_tag="KLC54_001317"
     CDS             complement(<1..172)
                     /locus_tag="KLC54_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177686.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQEGNENSLEQ
                     LSYIFNNTTYASE"
     gene            327..518
                     /gene="rpmI"
                     /locus_tag="KLC54_001318"
     CDS             327..518
                     /gene="rpmI"
                     /locus_tag="KLC54_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HBD9177687.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            612..965
                     /gene="rplT"
                     /locus_tag="KLC54_001319"
     CDS             612..965
                     /gene="rplT"
                     /locus_tag="KLC54_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HBD9177688.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     SAAFAKIAEAAKKAL"
     gene            complement(1020..1832)
                     /locus_tag="KLC54_001320"
     CDS             complement(1020..1832)
                     /locus_tag="KLC54_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HBD9177689.1"
                     /translation="MGIAKSLVAIFFYEVENFNDFKPRYLKTFIQKYSDFKYYYLNIR
                     AQKLEMTNEINKIILNQLKQNTSEIDKNTSIFKEIFEELENIRRSLTTISESFTNFTN
                     YLEYNLYQSEEKMNLEKEVQSSLKNIDQLNSILDLISGIAEQTSLLSLNAGIDAARAG
                     KLGRGFAVVADEVRKLSENTQMGLGEMEGAIKLVIQTIQSIAKSSNSSTQEMNFIRDK
                     SNEFSKIISNLINSGKEISDKLKQRSNVGEDFEKNVNQLKCYEDVLAKLNQY"
     gene            complement(2122..2863)
                     /locus_tag="KLC54_001321"
                     /pseudo
     CDS             complement(2122..2863)
                     /locus_tag="KLC54_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
     gene            3168..4025
                     /gene="cheP"
                     /locus_tag="KLC54_001322"
     CDS             3168..4025
                     /gene="cheP"
                     /locus_tag="KLC54_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HBD9177690.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMTAKLLQLANSPYYGFTREITTINQVITLLGIGNIINIVTADSIRDSFKID
                     VSPYGLDTQNFLKTCNEEATFITNWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REEVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLEEAKTQGINFDLNNLLSKLPSK
                     AKENLNKED"
     gene            4053..4532
                     /gene="cheQ"
                     /locus_tag="KLC54_001323"
     CDS             4053..4532
                     /gene="cheQ"
                     /locus_tag="KLC54_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HBD9177691.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNVEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(4501..5811)
                     /locus_tag="KLC54_001324"
     CDS             complement(4501..5811)
                     /locus_tag="KLC54_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD9177692.1"
                     /translation="MSKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVLLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKIGIIKSCVFFSVFFGIVSLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALDNLSNFWRFSLGIYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
     gene            complement(5814..5969)
                     /locus_tag="KLC54_001325"
     CDS             complement(5814..5969)
                     /locus_tag="KLC54_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HBD9177693.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYPQNHHKNYNYDDDDYEYDDDNND
                     DDFYEMD"
     gene            6062..6535
                     /gene="moaC"
                     /locus_tag="KLC54_001326"
     CDS             6062..6535
                     /gene="moaC"
                     /locus_tag="KLC54_001326"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HBD9177694.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITSRIATASGMIYMSQEAFDVIK
                     NNTAKKGPVLQTAIIAAIMGAKKTSEIIPMCHPLMLSKVETDIMEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDILLESKEGGKSGKFVRS"
     gene            6513..>6743
                     /locus_tag="KLC54_001327"
     CDS             6513..>6743
                     /locus_tag="KLC54_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 family protein"
                     /protein_id="HBD9177695.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHVKASEIFQEILGQREY
                     KFEHSNSSASGKYQSYLLNVYVDSKKDRLDIFD"
BASE COUNT         2396 a          944 c          994 g         2409 t
ORIGIN      
        1 attcactagc ataagtggta ttattaaaaa tataacttaa ttgttctaag ctattttcat
       61 ttccttcttg atccaaagct ttgctatctt taatcaaatt tagagcagag ctattctgca
      121 aaggattaga taaggttaaa ttttgatatg gatttgccga atttatagtc attttaaatc
      181 tttccaaaat attgctattt tttataagca aaaggtgtgc caagtttttt aaaaattaaa
      241 ttcagtcaaa aattagaaaa aatttgatag tatttagctt ttcttttaat ttgaaaaata
      301 aaaatttatc taaataagga aagcgtatgc caaagatgaa aagcgttaaa agcgcagtta
      361 aacgcttcaa agtaggtaaa aataaaatca aaagaggctc agcttttaga agtcatattt
      421 tgactaaaaa acctgcaaaa agaatgcgtg atcttcgcac agctaaatat gtgcatagca
      481 caaatgtaaa agctgttgaa aaaatgctag gaatttaagt ttttgactaa aagtcattca
      541 aactcccctc tgagataaaa tttcaagggc aagctccaaa tttggacgcc actttatgaa
      601 aggaaataaa aatggcaaga gtaaaaacag gtgttgttag acgccgcaga cataaaaaag
      661 ttttaaaatt agcgcgtggt ttttatagtg gacgccgcaa acattttaga aaagcaaaag
      721 aacaattaga aagaagtcta gtctatgctt atcgtgatag acgccgcaaa aaaagagact
      781 tccgtcgtct ttggattgtg cgtatcaatg ctgcttgtag gcttaatgat ttaagttatt
      841 caagatttat caatggtctt aaaaaagcag gtattgaact tgatagaaaa attctagcag
      901 atttagctat gaatgattct gctgcttttg caaaaattgc agaggccgca aaaaaagcac
      961 tttaattttt tttagtgtaa gaatttcaag atttttgatt tcttgaaatt cttaattttt
     1021 tagtattgat ttaatttagc tagaacatct tcataacatt tgagttgatt tacatttttt
     1081 tcaaaatctt cgccgacatt gcttctttgt tttaatttat ctgaaatttc tttacctgaa
     1141 tttataagat ttgaaatgat tttggaaaat tcattggatt tatcccttat aaaattcatt
     1201 tcttgagtac tagaattgga actttttgca atggattgta tggtctgaat aactaattta
     1261 atagctcctt ccatttcacc tagacccatt tgggtatttt ctgaaagttt tctaacttca
     1321 tcagctacaa ctgcaaatcc acgaccaagt tttccagctc tagcagcatc tatacctgca
     1381 tttaaagata aaaggctagt ttgttcagca atccctgaaa taagatctaa aatactattt
     1441 aattgatcta tatttttcaa agaagattgc acttcttttt ctaaattcat tttttcttca
     1501 ctttggtaaa ggttgtattc taggtagtta gtgaaattgg taaaactttc actaatggtt
     1561 gtaagacttc ttcttatatt ttcaagttct tcaaaaattt ctttaaatat acttgtattt
     1621 ttatcaattt ctgatgtatt ttgtttgagt tgatttaaaa ttattttatt aatctcattt
     1681 gtcatttcta gtttttgagc tcttatatta agataatagt atttaaaatc gctgtatttt
     1741 tgtatgaaag tttttaaata tctaggtttg aaatcattaa aattttcaac ttcataaaaa
     1801 aatattgcca ctaaactttt tgcaattccc actccataaa tttccccaaa actagaaaaa
     1861 ccaactatag gaaaatcatt aaaatggatt tgatttaaat gttctttgtt ttgaagtctt
     1921 cttaagatac aatcattaaa aattgctcct agtggttttg gtttattaag agaaaatttt
     1981 tcgtaatctt tttttatggc ttcaataaaa tttgtttttt aagcaagctt aattcttgag
     2041 cgctttctat atcacaataa ctaaataatg ttttatctgg gttgatttcc ataggggaaa
     2101 taagatagtc ttctccaatt tttaaagcaa aagtatattc ttgcatttta tttttaagtt
     2161 cttcaaaagt acagttaaaa taattgcata aagcttcaac cgcgttgatg gattgaaagg
     2221 tttttttatc aataaattca cgtaccgtcc tatcatataa gcttgcatca agtatggtaa
     2281 aggtaatgtt gctttgagga ttaaaatttt gagatttcat taaatcaaaa cgatatttag
     2341 atttaaattg gacatgtatg cttaaagctt gattttttaa tatttctccg ttataaaata
     2401 taaatgttcc gctaaagtcc atatttccac tagatccacc tcctactaaa gcacaaggat
     2461 aggggttgtg tttgtataaa agttctaaaa gagaactttc gctttgactt aaaccatcat
     2521 aaattaaata atgcaaagta tttgtgcagt gtgcttcaaa aggtatattt atagataaaa
     2581 cttctttttc tatcagtttt tttctttctg tataatcttt tatattgcta aaaagcttga
     2641 ttttatttgt gcagagattt tctatcatat cttcgctaaa aagcatcaag cttattcctt
     2701 ggatattttg tttataagga ctgttttcaa tgtttgagtt agaatcaaga ttgcacaata
     2761 aatcagtagc actgcttaag atgatatcac attgttcatt tatagaattt tgaatcttat
     2821 ttcctatgat tgctaggtta agttgatacg acgcaaagcc tatgattaat tttggcttga
     2881 tatttatttt ttttaatttt tcttcaagtt cattttcttg aagaaataga gcttctaaaa
     2941 cttttttact ctcttctttt tgcgctgagc ttttattttt aaaattaaaa aacattgatt
     3001 aaactccgtt aaaattattt taatttgtta gttaattaaa aataatataa aattttagta
     3061 tttataattt ttattatatc ttaaagtaac aaaaaatgta ataagtaaat taaaatttag
     3121 atataatcat aaattataat aatactaact tcaaggataa atcaaatatg attggagata
     3181 tgaatgagct tttattaaaa agcgttgaag tattgccacc tttacccgat actgtaagta
     3241 agttaagaaa atatgtgagc gaggctaatt caaatataga aaccatgaaa gttgctgaaa
     3301 tcatttcaag tgatccgttg atgacggcta agcttttgca attagcaaat tctccttatt
     3361 atggttttac aagggaaatt acaaccataa atcaagtgat tactttatta ggcattggca
     3421 atattatcaa tatagttacg gctgattcca ttagagatag ttttaaaata gatgtttcac
     3481 cttatggttt ggatacacaa aattttttaa aaacttgcaa cgaagaggca acttttatca
     3541 caaattggct taatgatgaa gataaaaaac tttctcatct tttagttcct tgcgcaatgc
     3601 ttttaaggct tggtattgtt attttttcaa attttcttat acaaaatcat aaggataagg
     3661 attttttagc ttttttaaat aaaaatgaaa atcttgcttt agcggagaat gaatttttag
     3721 gcgtagatca tatttctttc ttgggatttt tgttacatcg ttggaatttt gatgatgttt
     3781 tgattgaaag tatatgtttt gttcgcactc ctcatgctgc tcgtgaagaa gtgaaaaaat
     3841 ctgcttatgc tttagcaata acagatcatc tttttgctcc gcatgatggc tcttctccat
     3901 ttaacgcaaa agctgcagtt gctttacttg aagaggcaaa aactcaagga attaattttg
     3961 atttaaacaa tcttttatct aagcttccta gcaaagctaa ggaaaattta aacaaagaag
     4021 attaaagagc ctttttaggg ctctaaattg tagtgatgaa aagtttaatc ttacctccta
     4081 atgaattttt agatcactat attttaaatg ccgaatttca tcgttttgct ggaatttcaa
     4141 aaaatgctta taaattttgg aaaaatgtag aaataggcag atatcaagga acaagaatta
     4201 tatttttgca tagaaattgc attttagaaa aacatcagca agctttaagg caatgtagtg
     4261 gtttaaatgg ttttgtattg gcaagtgctt tttgttcttt tactggatta gccccctctc
     4321 atttagtgga aaaaaataat tcttctattt acaaactttt agagcttaag gagatttgtg
     4381 ggattaaatt tgttaatcta aaaaaatttt atgatttttt agggctaaat tatcatcagc
     4441 atatttatat agaaaaatgc cattttttta gcccagctcc ttttgaaaag cgtattaaaa
     4501 tcactgagag tatgtgcgtt gggtattatt aagataagaa aaaataaatg cacatagcaa
     4561 agctataata gccaaaaaga aaacataaat tcccaaagaa aaacgccaaa aattacttaa
     4621 attatctaag gcaaaactat gcaagaaaaa agcaagttgc ggagttaaac ctccagctat
     4681 agcataagca atattatatg aaaaagaaag tcctgaaaat ttaatttttg catcaaatac
     4741 ttcactcatt attaaagggc aaaaattcat cactccgcta aaaaaacaca caagtaaata
     4801 taagcaagct actaggttaa aatcagcatt ttgtctatat agagtattaa aataaagcaa
     4861 gcttacaatt ccaaaaaaaa cactaaaaaa tacacaagat ttgataatgc ctattttatc
     4921 cgctaaaatt ccacttataa tacaccctag gcaaataagt aaaattccac ctatttgaag
     4981 ataggtttgt atagaagtgt taatttgaag tatttttgcc atatagctag gcataagcaa
     5041 aatcattaca acaatgcaac ctgtcaaaac ccaagtaatc atcatagaaa gaacaattcc
     5101 cattttagct tttttaaaca cttcttttaa aggaaatttt tctaaagcct tgtctttttt
     5161 catttgttca aaaacaggag tttctcttaa aaattttctc aaataagcag aaataatccc
     5221 gaaaattcca cctaaaaaga atggaattct ccaagcccat tcatgaagtt cttcttgggt
     5281 ataaatttta ttcataatta aaaaaactaa actacctaat aaaattccac ctacaaccga
     5341 agcggttaaa attcccaaat aagttctttt ttgaccttgt ggtgcgtgtt cgtatacaaa
     5401 aacccaagct ccaggaagtt ccccgcctat agcaatgcct tgacaaatgc gtataaaaac
     5461 taaaagcaca atacaaagaa aacctatgct ttcataattt ggaataaaag ctagagtaaa
     5521 agttggaata accattaaca aaatactaat cataaacatt cttttgcgtc caaatttatc
     5581 tccaaaatgt gccagtatca caccccctaa gggacgcgct aaatatccag ccgcaaatat
     5641 tccataagta ttaaacattt gccaaaaact acttaaatct tttggaaaaa agtttgttga
     5701 aatataattt gcaaaaaata caaaaataat aaaatcataa aattctaaag ttccacctaa
     5761 tgatgaaagt cctaaaactt ttatatcttt ttggttaagg gttttgctca ttcttaatcc
     5821 atctcataaa aatcatcatc attgttatca tcatcgtatt cataatcatc atcatcgtaa
     5881 ttataatttt tatggtgatt ttgtggatat tcttcatctt cgttttcata atcatcgtaa
     5941 tttaaatctt cttcatcttc ataagccatt gttttctcct taaataaaaa tacaaagctt
     6001 attttatctt aaatttgttt ggttttgcta taatttttat aattttttaa aaggtgaatt
     6061 tatgaaatta agtcatttag atgaaaaaaa tcatcctaaa atggtagatg taagcgataa
     6121 aaatattact tcaagaatag ccacagctag tggtatgata tatatgagtc aagaagcttt
     6181 tgatgtaatt aaaaacaata ccgcaaaaaa aggtcctgtt cttcaaacag ctattattgc
     6241 ggctataatg ggggctaaaa aaacaagtga aattattcct atgtgccatc ctttaatgct
     6301 ttctaaagtc gaaactgata ttatggaatt tgttaaagaa tgtgcattta agcttattgt
     6361 aacagttaag tgtgaaggta aaacaggggt tgaaatggaa gctttaagtg gggttagtat
     6421 aggactttta actatatatg atatgattaa ggctatagat aaatcaatga ggattacgga
     6481 tatattgctt gaaagcaaag aaggaggcaa aagtggtaaa tttgtgcgat cttaaaaaag
     6541 aaccccagat caattatcct actttttggg attataaggt gatttttgag gtgcatgtta
     6601 aggcaagtga aatttttcaa gaaattttag gccaaagaga atataaattt gaacattcga
     6661 attcaagtgc gagtggaaaa tatcaaagtt atttattaaa tgtttatgtt gatagcaaaa
     6721 aagatcgttt ggatatattt gat
//
LOCUS       DAEDTT010000084         6536 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.084, whole genome shotgun sequence.
ACCESSION   DAEDTT010000084 DAEDTT010000000
VERSION     DAEDTT010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6536)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6536)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6536
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.084"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            320..2242
                     /locus_tag="KLC54_001328"
     CDS             320..2242
                     /locus_tag="KLC54_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HBD9177696.1"
                     /translation="MIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQN
                     SDKLLLPVENLYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAA
                     KRSLVQAKKITVDLSRQADFITSAGFIYTSDQEKACHEILQDFQSGKVMDRLLSGDVG
                     FGKTEVAMNAIYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSS
                     AEKKQVLQNLKENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNS
                     HILSMSATPIPRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDALLKEAIARELR
                     RGGQIFYIHNHIASIEQCKKHLLELFSTLRILILHSKIDAKVQEEEMLKFENKEYDLL
                     LSTSIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAIT
                     KDALKRLVSLESNSFLGAGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLED
                     ELNALSKNEVDQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIE
                     GEIEDRFGKLDIYTKQFLSLIIIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSK
                     DDDDILEAILTHLRKA"
     gene            2244..3005
                     /locus_tag="KLC54_001329"
     CDS             2244..3005
                     /locus_tag="KLC54_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD9177697.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPITLKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKDQGLRLVELNKEDLFALVDIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     IADNLDTQIAHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            3002..3688
                     /locus_tag="KLC54_001330"
     CDS             3002..3688
                     /locus_tag="KLC54_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HBD9177698.1"
                     /translation="MTGVQIFTKLLNLDLNYYDFDWLENQGLSEFELLISVILTQNTN
                     WKNVLKALENLKKENITSLEQINTLSNLELATLIKPSGFYNTKAKRLKGLVESIINTY
                     ENLENFKTNVSREWLLNIKGLGFESVDGILNYLCKREILVVDSYSLRLAFHLGYEFEN
                     YEELREFFQSGIEGEQENLCKILGRKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            3685..4497
                     /gene="thiD"
                     /locus_tag="KLC54_001331"
     CDS             3685..4497
                     /gene="thiD"
                     /locus_tag="KLC54_001331"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HBD9177699.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTSRVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNVVIDPVMFAKNGYALMPQENCDFFKQTIVKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGAKAVLLKGGHSETNANDVLYNGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            4487..5119
                     /gene="thiE"
                     /locus_tag="KLC54_001332"
     CDS             4487..5119
                     /gene="thiE"
                     /locus_tag="KLC54_001332"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HBD9177700.1"
                     /translation="MKNKLDLSLYLVASQGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKAYKIPFLINDRVDIALALDADGVHLGQEDLEVKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGANYLGCGAIKVTPTKESSLLSLELLSQICDKSPIGVVA
                     IGGVDKAVLDELKGINLSGVAVVRAIMDAKDAFLAAKELKCKIYENLPLK"
     gene            5097..5726
                     /locus_tag="KLC54_001333"
     CDS             5097..5726
                     /locus_tag="KLC54_001333"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HBD9177701.1"
                     /translation="MKIYLLNETPFKGVENLILNEIVFYDFSIDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKTQ
                     KCLYLRAKNIVSTLNLDLKNAGMDLDEVIVYENVFKKGNKKLTHPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLECVKLAKTLV"
     gene            complement(5723..6175)
                     /locus_tag="KLC54_001334"
     CDS             complement(5723..6175)
                     /locus_tag="KLC54_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177702.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQAKQENKECLDNIYFNYAKALIKIKYFYPIAQCVNFKFSNFN
                     PDANLNKDGVIIVHISIALNRDKNVNDEILLTKSIIIYPKENFWNLKN"
     gene            complement(6172..>6536)
                     /locus_tag="KLC54_001335"
     CDS             complement(6172..>6536)
                     /locus_tag="KLC54_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177703.1"
                     /translation="HTLYSPHSDFKTQLQNRKDLYNDNEHISYAYKINKIEKISILEN
                     GISTNFTGSFIPLQAQLVIKLQNEELIYEMKPKFNEQLNQQGLISKNISSFNLQNNKL
                     KICLKRQTKYCLEKRILL"
BASE COUNT         2372 a          742 c         1203 g         2219 t
ORIGIN      
        1 tgatttttta gcttgtgaaa agtttgatat taacgaatat gaaaaagatg taagttttgt
       61 gaatgcaaaa attttacctc aagctaaaaa atttaaagaa ttgcaaagtt cttacaataa
      121 agattttttt gaatttcata aaaataaaaa aatcacactt ttagctaaaa acgaagcttt
      181 atttaaagct ttagagcttg aagatactca aaatatctat tttgtaaaaa gtgatttaag
      241 gcttaatctt attagtcctg aagagctaat catttcttta aatcaaaaag aaaaacaaaa
      301 aacaagaaaa aaagctagtt tgattataga tgagcttaaa aatggggatt atatagtaca
      361 cgaagattac ggagtgggta aatttttagg tcttgagatg atagtgataa gcggagcaaa
      421 aaaagagttt gttgctatag agtaccaaaa ttctgataag cttttattac cagtggaaaa
      481 tctttattta attgataaat atttgggcgt gagtggatct attccaagtt tagacaaact
      541 aggtaaaaca agctttatta aacttaaaga aaaattaaaa actaaacttt tagccatagc
      601 ttctgaaatt gttattatgg cggctaaaag atctttagtg caagcaaaaa aaatcacagt
      661 ggatttaagt agacaagctg attttataac tagtgcgggt tttatttata caagcgatca
      721 agagaaagct tgtcatgaaa ttttgcaaga ttttcaaagt ggaaaagtta tggataggct
      781 tttaagcggt gatgtgggtt ttggaaaaac agaagtcgct atgaatgcta tttatccagt
      841 agttaaaagt ggattttgtg catttttatt tgcgcctaca actttgcttt ctcatcagca
      901 ttataaaacc ttaaaaaagc gttttgatcc ttttgatata aaggttttta aactggatcg
      961 ctttacaagt agtgcagaaa aaaaacaagt tttacaaaat ttaaaagaaa ataaagcttg
     1021 tgtagttgta ggaactcatg cgcttttaag tgtagaatgt gaaaatttag ctcttgttat
     1081 tattgatgaa gagcataaat ttggagtgaa gcaaaaagaa aagcttaaag aaatcactca
     1141 aaattcacat attttatcca tgtcagcaac ccctatacca agaagcttaa atcaagcttt
     1201 aagttctata aaatcttata gtgttttgca aactccacca gaagatagaa tggatgtaag
     1261 aacttttgtc aaagaaaatg atgacgcact tttaaaagaa gctatagcaa gagagttaag
     1321 acgtggtggg caaatttttt atattcataa tcatattgca agtatagagc aatgcaaaaa
     1381 acatttatta gaactttttt ctactttgcg tattttgatt ttacattcta aaatcgatgc
     1441 caaggtgcaa gaagaagaaa tgttgaaatt tgaaaacaaa gaatatgatt tgcttttaag
     1501 tacctctatt gtagaaagtg ggattgattt acctaatgca aatactatca tagtagaaaa
     1561 aagcgatcgt tttggcatgg ctgatttgca tcaattgcgt gggcgtgtag gaagaagtga
     1621 taagcaaggt tattgttatt ttttaatcga agataaaaat gctatcacaa aagatgcttt
     1681 aaagcgtctt gtttctttag aaagcaattc ttttttgggc gcaggttctg ttttggctta
     1741 tcatgatctt gaaattcgtg gcggtggaaa tttattaggc gtagatcaaa gtggacatat
     1801 cgagcaaatt ggatatagtt tatatcttaa aatgttagaa gatgaactta atgctttaag
     1861 taaaaatgaa gtggatcaaa aagaaaataa acttgattta aaactcaatg ttaatgcctt
     1921 tttaaacagc gaacttatca gcgaagatcg cttaagatta gaactttata gaagacttag
     1981 caagtgtgag caagttcatg aggtttatga gatcgaaggt gaaattgaag atcgctttgg
     2041 aaaacttgac atttatacta agcaattttt atctttgatt atcattaaaa ttttagcttt
     2101 aaataaattt aaaagtatta gcaattatga gcaaaatatt caatttactg ctttaaatga
     2161 tgaaaaagaa ctcatcaagg caaaaagcaa agacgatgat gatattttag aggcaatttt
     2221 gacgcattta agaaaggctt aaaatggatt ggaataaaac ttatgcagca atttatagag
     2281 caagaaaaga ctatttaaag cctatttttg aaatcgatcc tatcacttta aaagatttag
     2341 taggtatgga aagtcaaaaa aaagcacttt atgaaaatac tttaaatttc attcaagata
     2401 agggagcaaa tcacgcactt ttatggggat ctaagggcac tggaaaatca agtttaatta
     2461 aagctatatt taacgaattt aaagatcagg gcttaagact tgtcgaatta aataaagaag
     2521 atttatttgc cttagtagat atcatcgatg aaatcagatt agaaaatttt aaatttatac
     2581 ttttttgtga tgatttttct tttgagaaag gagatgatag ttataaattt ttaaaacctt
     2641 tactcgaggg aagcatagaa aaagccccaa ataatgtaat tatttatgcg agttcaaatc
     2701 gtaggcattt attaagtgaa agcattgctg ataatcttga tacgcaaatt gcacatacag
     2761 aacttcattt aagcgatgct gctgaagaaa gattaagttt gagtgataga tttggtttgt
     2821 ggttaagttt ttatcaggga aatttagaag agtatttaaa gatgatagat ttttatttta
     2881 aagattattc ttgtgataaa gagcttttac acgctaaagc taaagaattt gctactctaa
     2941 gagcaagcag aagtggtcgt actgcaaagc aattttattt ggcttttaag gagaatttta
     3001 aatgactgga gtgcaaattt ttaccaagct tttaaatttg gatttaaatt attatgattt
     3061 tgattggctt gaaaatcaag gattgagtga atttgagctt ttaatttctg tgattttaac
     3121 tcaaaataca aattggaaaa atgtcttaaa agctttagaa aatttaaaaa aagaaaatat
     3181 tacaagttta gaacaaatca atactttatc caatttagaa cttgcaactt taattaagcc
     3241 tagcggattt tataatacca aagccaagcg tttaaaaggc ttagtagaaa gtatcataaa
     3301 cacttatgaa aatttagaaa attttaaaac aaatgtaagc agagaatggc ttttaaatat
     3361 caaaggtttg ggttttgaaa gtgttgatgg gatattaaat tatctttgca aaagagagat
     3421 tttggttgta gatagttata gtttgcgttt ggcttttcac ttaggctatg agtttgaaaa
     3481 ttatgaagaa ttaagagaat tttttcaaag tggtatagag ggtgagcaag aaaatttgtg
     3541 taaaatttta gggagaaaat gcgaacttta cgaactttat caaatttttc atgctttgat
     3601 tgtagctttt gcaaaacaga gttttaaagg acaaaaatta agccctaagg gtgaagaatg
     3661 gatcaaaatt ttaaaggaag atttatgaaa gcaaaaggaa gcgaacttat acctgtttta
     3721 actatagcag ggagtgattg tagtggtgga gcagggatac aagccgatct taaaaccttt
     3781 agtgcgcaca atctttttgg catgagtgtg gttttaagtg tagtagctga aaatacctca
     3841 agggtgattt ctgtacacga tatacctact caaagcgtag atgaacaaat gcttgctgtg
     3901 tttgaagata tagtgccaaa ggcaactaaa atcggaatga taggttcttg tgaattaatg
     3961 agctgtgtag ctaaaaattt aagcgagttt aaacctcaaa atgtagtgat cgatcctgta
     4021 atgtttgcta aaaatggcta tgctttaatg ccgcaagaaa attgtgattt tttcaaacaa
     4081 accatagtaa aatttgcaga cattcttacg cctaatattc ctgaagcaga gtttttatgt
     4141 ggttttaaga tcgctaatga agagcagatg ataaaagcag ctaagcattt atgcagcttg
     4201 ggggctaagg cagttttgct taaaggcgga catagtgaaa caaatgccaa tgatgtgctt
     4261 tataatggaa aagaaattta tattttaaaa ggcgaacgca tagaaactaa aaatactcac
     4321 ggtacaggtt gtacgctttc ttcggctatt gctagtaatt tagctaaagg caaggatttg
     4381 tttcatgctg ttagtgaagc taaagaatat gtaagaaatg cgatttatta ttcactcaat
     4441 cttggaaaag gttgtggtcc tacaaatcat tttttcaagt ttttagatga aaaataaatt
     4501 agatcttagt ctttatttag ttgcttctca gggaaataaa agcgaggagt gttttttaaa
     4561 tactttagaa aatgctataa aaggcggagt aagtatcata caacttcgtg aaaaagagct
     4621 taatgcaaga gaattttata aactaggctt aaaggtgcaa aaactttgca aggcttataa
     4681 aatacctttt ttgattaacg atagagtgga catagcttta gccttagatg ctgatggggt
     4741 gcatttagga caggaagatt tagaagtaaa actagctaga aagcttttag gagatgaaaa
     4801 aatcataggc ttaagcctta aaaagctaga acaacttgag ttcatacaag gagcaaatta
     4861 tttaggttgt ggagccatta aggtaacacc tactaaagaa agttcgcttt taagccttga
     4921 gcttttaagt caaatttgtg ataaaagtcc tataggggtt gtagccatag gaggggttga
     4981 taaagcagtg cttgatgagt taaagggtat aaatttaagt ggtgtagctg tggttagggc
     5041 gatcatggat gctaaagatg cttttttggc agctaaagag ctaaagtgta aaatctatga
     5101 aaatttacct cttaaatgaa actcctttta aaggggtgga aaatcttatt ttaaatgaga
     5161 ttgtttttta tgattttagt atagatttga gtttgtatga tgctttaatc tgtacttcaa
     5221 aaaatgcttt aaaagcttta caacatgcaa aaatcacttt aaatttcaaa ctcaatttat
     5281 acgctgtagg acaaagtaca gctcaatacg ctaaaaattt aggttttaaa aagattaaaa
     5341 ttccatcaaa ggcttacgga aaagatcttt ttcttgaatt taaagaggag ttaaaaacgc
     5401 aaaaatgttt gtatttaagg gctaaaaata ttgtttcaac tttaaatttg gatcttaaaa
     5461 atgcaggtat ggatttagat gaagtgattg tttatgaaaa tgtttttaaa aaaggtaaca
     5521 aaaaacttac tcatcctgct atttttatat ttacctctcc tttaagtgta gaaaattttt
     5581 taaaatttta tagcttaaaa gaagaagata aggttgtagt tataggacaa agcacagcaa
     5641 agaagctttt aaattttaaa aatctttata tatgcgaaaa tcaaagtctt ttagagtgtg
     5701 ttaagcttgc taagactttg gtttaatttt ttaaattcca aaaattttct ttgggataaa
     5761 tgataatgct ttttgtgagt aaaatttcat cattgacatt tttatcacga tttaaagcaa
     5821 tgctaatgtg gactataata acaccatctt tgtttaaatt tgcatcggga ttgaagttgg
     5881 aaaatttaaa attaacacat tgtgcaatag gataaaagta ttttatttta atcaaagctt
     5941 ttgcgtaatt aaaatatata ttatctaaac attctttatt ttcttgcttt gcttgatata
     6001 aaaaatattt agaaaattgt gttgcattgt gacttaaaat ttgagcttga aggtagtaat
     6061 aactatcttg gattattttt ggagtgtagc tagatatgtt taaggtcaag ctcatccata
     6121 gacttattag tagtattaaa aaaattgtcc aaattaaaac ataagctttt ttcatagtaa
     6181 aattcttttt tcaaggcaat attttgtttg tctttttagg caaattttta atttattgtt
     6241 ttgcaggtta aatgagctta tgtttttaga aattaatcct tgttggttta attgttcatt
     6301 aaattttggc ttcatttcat atataagttc ttcattttgc aatttgataa ctaattgagc
     6361 ttgcaaagga ataaaactac ctgtaaaatt tgtagatata ccattttcta agatggatat
     6421 tttttcaatc ttattaattt tataagcata gctaatatgc tcattgtcat tatataaatc
     6481 ttttctattt tggagttgtg ttttaaaatc agaatgaggt gaataaagtg tatgat
//
LOCUS       DAEDTT010000085         6459 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.085, whole genome shotgun sequence.
ACCESSION   DAEDTT010000085 DAEDTT010000000
VERSION     DAEDTT010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6459
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.085"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..968
                     /locus_tag="KLC54_001336"
     CDS             <1..968
                     /locus_tag="KLC54_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004291567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HBD9177704.1"
                     /translation="CIEECVKRINSVDIVWFSYDSLIEIPLKKKTKNQMQFFDYNQEQ
                     IITSIDWLKQVNSGHKPLFWFAWQGMINFNFLMKIRLKFINGIIHEDNHFGILLFSIA
                     KYIYVYPEILYIYRVRSGSIMTQNEKTKVANDSYLYPLFVKAEQNYELFKRYQVAFGS
                     LMTCFYVIEFIEKKKIDYPKLIEVKNVFMPVLLDRAVVMLFLEKDYLNLITCFNSLKS
                     YFKEFKLSGAESFKYELSYRLGYLFLNNYRSIKGLLTLMPKMKKEVQNYYLEKQNFQN
                     NIKYFPFIEFVSELDENLSLKRIKNHYSYKVGRIFVWILKYFGVK"
     gene            1068..2024
                     /locus_tag="KLC54_001337"
     CDS             1068..2024
                     /locus_tag="KLC54_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002912510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HBD9177705.1"
                     /translation="MKSILITGGSGFLGSNLCKRLLGEGNKIICVDNNYTGKMKNIKE
                     LLENENFTFIEHDICEPLKITQKLNQIYNFACPASPPAYQGKHAIKTTKTSVYGAINM
                     LELAKEHNATILQASTSEVYGDPLIHPQNEEYRGNVNPIGIRACYDEGKRCAESLFFD
                     YHRHEGVDIKIIRIFNTYGENMDPNDGRVVSNFICQALSGKDITIYGDGSQTRSFCYV
                     DDLIDIIIKVMNSSKDFQGPINTGNPGEFTIKELAQKIIEKTGSKSKIIYKDLPLDDP
                     IQRRPDISLAKAKFDWEPKINLDEGLEKTIKYFKEKITEFKG"
     gene            2030..3328
                     /locus_tag="KLC54_001338"
     CDS             2030..3328
                     /locus_tag="KLC54_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HBD9177706.1"
                     /translation="MKVGIIGTGYVGLPTGVGLAELGNDVICIDREKSKIDALNNGIL
                     TIYEDNLEELFHKNVKEGRLKFTTSMQEGIKDADLVIIAVGTPPHPVTKEADMRYIHA
                     AATELADYLTGYTVIATKSTVPVGTGDDIESLISKKNPNAEFDVLSLPEFLREGFAVY
                     DFFNPDRIIVGTNSQRAKAVIEKLYEPFQGKSELLFVNRRSSETIKYASNAFLAIKIH
                     YINEMANFCEKAGADILEVAKGMGLDTRIGNRFLNPGPGYGGSCFPKDTLAMAFMGKQ
                     NDIDLTLINAAIKGNEERKNHMCERILNSVKDIKNPKIAVLGLAFKDGTDDCRESPAV
                     DIVFKLLEQKVQICAYDPKAMDLAKQILGDKIDYANSMYEAIKDADVIAILTEWKEFS
                     SLDLKKAYDLVRHKKIIDLRNLIDKNEAINLGFEYQGVGR"
     gene            3325..4299
                     /gene="galE"
                     /locus_tag="KLC54_001339"
     CDS             3325..4299
                     /gene="galE"
                     /locus_tag="KLC54_001339"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HBD9177707.1"
                     /translation="MKNILVVGGAGYIGSHTLKHLLDNNYNCIVMDNLIYGHKQAIDK
                     RAKFIHADLLDIFSLTNVFKQEKIDALVHFAAFAYVGESVVNPEKYYQNNVVGTINLL
                     NAMLENNVKDIVFSSTCATYGEPQYTPIDEKHSQNPINAYGRTKLMIEQVFADYEKAY
                     GLRHISLRYFNAAGASEDGLIGESHEPETHLIPLVLKAIKGEIPAINIFGNDYDTEDG
                     TCIRDYIHVEDLALAHRLALENLHKFSGCINLGTGIGTSVKEIISAAEVVSGKKCPIN
                     YAPRRAGDPARLYADNKKAKEILSWEAKYNDIKDIIKSAWDWENNRKY"
     gene            4301..5419
                     /gene="glf"
                     /locus_tag="KLC54_001340"
     CDS             4301..5419
                     /gene="glf"
                     /locus_tag="KLC54_001340"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HBD9177708.1"
                     /translation="MKKVKNLIVGCGLSGAILAERLASKGQEVLIIDKREHIGGNIYD
                     YKDQESNITVHKYGPHVFHTSIKEVWEYLSRFTKWHYFMYRVKAFIDGREVNIPFNLD
                     TLHKVFPEYLAKELEQKLVSKFAFNSKIPILELKNANDKDLDFLAEYIYKKVFLGYTV
                     KQWGVKPEELDFSVSARVPVYISRDDRYFIDTYQAIPKDGYTKMIENIINHPLIKVQL
                     NIDFKDIKKDIEYERLFYTGAIDEFFDYKFGKLPYRSLNIVFETFDKEYMQSGPQINY
                     PENYDFTRSVEYKYYLDEKSTKTMLSYEFPCEYEEGKNERYYPIPNDENQKLYEKYLK
                     ESAKLRNVHFLGRLGDYKYYDMDKAVERVLKVAKEVIL"
     gene            5416..>6459
                     /locus_tag="KLC54_001341"
     CDS             5416..>6459
                     /locus_tag="KLC54_001341"
                     /inference="COORDINATES: protein motif:HMM:NF012745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HBD9177709.1"
                     /translation="MNKNPLISFILPNYNNEHVLDLFFEKFIFHNTYDNYEFIIVDDG
                     SEDNSLEVLYKWKNSGKIKNMLIIKEPHLGIINALNKALFLTKGEFIIRCDGDATIET
                     SSFVEKFLEFYYINPEKIGVITSKVIADNGWLHALGRSVISVNGLLDRGKIPTEVIGN
                     RKWDFATSVSKNFESIVNIPAEVDTALGVFTFFDRETAIKIGGFDKNYPLWIEDDDFF
                     LSFRLYNKKCFYLPNIEICHRFSLRGNRNPNAWKRKKTFFTFKWLYRKNIKGDNTYHK
                     LFNITFLKTKIDNQNDVKQYYIFNLKVLSLKYISWRSQILQNNYLYWNQKWGFNCLNP
                     DLNLIKQKYKNTEI"
BASE COUNT         2451 a          690 c         1147 g         2171 t
ORIGIN      
        1 attgtattga ggaatgtgtt aaaagaatta atagtgtgga tatagtttgg tttagttatg
       61 attcattgat tgagattcct ttaaagaaaa agactaaaaa tcaaatgcaa ttttttgatt
      121 ataatcaaga gcaaatcata acttcaatag attggttaaa acaagtgaat tctgggcata
      181 aacctttatt ttggtttgct tggcaaggaa tgatcaattt taattttttg atgaaaatca
      241 gattaaaatt tataaatggt attatccatg aagataatca ttttggaatt ttactttttt
      301 ctatagcaaa atatatatat gtttatccag agatacttta tatttatcgc gtaagatcag
      361 gaagtattat gacgcaaaat gaaaaaacaa aagttgctaa tgattcttat ttatatcctt
      421 tgtttgtaaa ggctgaacaa aattatgaac tttttaagag atatcaagta gcatttggtt
      481 ctcttatgac ttgtttttat gtaattgaat ttatagaaaa gaagaaaatt gattatccta
      541 aattaataga agtaaaaaat gtttttatgc ctgtattgtt agatagagcc gttgtaatgt
      601 tatttttaga aaaagattat ttaaatttaa taacttgttt caattcatta aaatcttatt
      661 ttaaagaatt taagcttagt ggagcagaat cttttaaata tgagttaagt taccgtttag
      721 gatatctttt tttaaataat tatagaagta ttaaaggttt attaacttta atgcctaaaa
      781 tgaaaaagga agttcaaaat tattatttag aaaaacaaaa tttccaaaat aatataaaat
      841 attttccttt tattgagttt gtatcggagt tagatgagaa tctaagttta aaaagaatta
      901 aaaatcacta ttcatataaa gttggaagga tatttgtgtg gattttaaag tattttggtg
      961 taaaataatt aatttttata ttattaaata tctaaaaatt gtttaaagaa gtagagaatt
     1021 ttatgctata atatcagatc tgattgagag ttaatgagag gggagttatg aaatccattt
     1081 taatcactgg gggaagcgga tttttaggtt ctaatttgtg taaaagattg cttggtgaag
     1141 gcaataaaat tatttgtgta gataataatt atacaggtaa aatgaaaaac atcaaagaac
     1201 ttttagaaaa tgaaaatttt acttttatag agcatgatat ttgtgagcca ttaaaaatca
     1261 cacaaaaact caatcaaatt tataattttg cttgtccagc ttctccgcct gcttatcaag
     1321 gaaaacacgc cataaaaaca acaaaaacaa gtgtatatgg tgctatcaat atgcttgaac
     1381 ttgcaaaaga gcataatgca actattttgc aagcttcaac ttcagaagtt tatggagatc
     1441 cactcattca tccacaaaat gaagaatata gaggcaatgt aaatcctata ggaattcgcg
     1501 cttgttatga tgaaggaaaa agatgtgctg aaagtttgtt ttttgactat catagacatg
     1561 aaggcgtgga tattaaaata ataagaattt ttaacaccta tggagaaaat atggatccaa
     1621 atgatggcag agttgtaagt aattttatat gtcaagcttt aagtggaaaa gatatcacaa
     1681 tttatggaga tggttcgcaa acgcgttctt tttgttatgt ggatgattta attgatatta
     1741 ttattaaagt gatgaattct tcaaaagatt ttcaaggacc tataaatact ggcaatcctg
     1801 gtgaatttac cataaaagaa ttagcacaaa aaattataga aaaaacaggt tcaaaatcaa
     1861 agattattta taaagattta ccattggatg atccaattca aagaagacct gatatttctt
     1921 tagctaaagc taaatttgac tgggagccaa agataaattt agatgaaggt ttggaaaaaa
     1981 ctataaagta ttttaaagaa aaaattacag aatttaaagg ataaaattta tgaaagtagg
     2041 aatcatagga acaggttatg ttggacttcc aacaggtgtt ggactagcag aacttggcaa
     2101 tgatgttatt tgtatagata gagaaaaatc aaaaattgat gccttaaata atggaatttt
     2161 aacaatttat gaggataatc ttgaagagct ttttcataaa aatgtaaaag aaggtcgttt
     2221 aaaatttaca acttctatgc aagaaggcat taaagatgca gatttagtaa ttatagcagt
     2281 aggaactcca ccgcacccag ttacaaaaga agcagatatg aggtatattc atgcggctgc
     2341 aactgaatta gccgattatt taacaggata tacagtaatt gctacaaaat ctactgttcc
     2401 tgttggtaca ggcgatgata tagaaagttt aattagtaag aaaaatccaa atgctgaatt
     2461 tgatgttctt tctttacctg aatttttaag agaaggtttt gcggtatatg atttttttaa
     2521 tccagataga attatagtag gaacaaattc acaaagagca aaagcagtga tagaaaagct
     2581 ttatgagcct tttcaaggaa aaagcgaatt gctttttgta aatcgccgtt cttcagaaac
     2641 tattaaatac gcttctaatg catttttagc tattaaaatt cactatatta atgaaatggc
     2701 aaatttttgt gaaaaagctg gagctgatat tttagaagtt gctaaaggta tgggtcttga
     2761 tactaggata ggaaatcgtt ttttaaatcc tggacctgga tatggaggtt cgtgttttcc
     2821 aaaagatact ttagctatgg cttttatggg taagcaaaat gatatcgatt taactttaat
     2881 aaatgcagct attaagggaa atgaagagcg caaaaaccat atgtgtgaaa gaattttaaa
     2941 tagcgttaag gatattaaaa atccaaaaat agccgtactt ggacttgctt ttaaagatgg
     3001 tactgatgac tgtagagaaa gtcctgctgt agatattgtt tttaaacttt tggagcaaaa
     3061 agttcaaatt tgtgcttatg acccaaaagc tatggattta gctaagcaaa ttttaggaga
     3121 taaaattgat tatgctaatt ccatgtatga agctataaaa gatgctgatg tgattgctat
     3181 actaacagaa tggaaagaat tttcaagtct tgatttaaaa aaggcttatg atttggtaag
     3241 gcataaaaaa attattgatt taagaaattt gattgataaa aatgaagcta taaatctagg
     3301 ttttgagtat caaggtgtag gtagatgaaa aatattttag ttgtaggtgg tgcaggatat
     3361 ataggctcac ataccttaaa acatttgcta gataataatt acaattgtat tgtcatggat
     3421 aatctcatct atggacacaa acaagctata gacaaaagag ctaaatttat ccatgcagat
     3481 ttactagata tcttttcttt aactaatgtt ttcaagcaag aaaaaataga tgccctagtg
     3541 cattttgcag cttttgctta tgtgggagaa agtgttgtaa atcctgaaaa atattatcaa
     3601 aataatgtag taggaactat aaatctttta aatgcaatgc ttgaaaataa tgttaaagat
     3661 atagtatttt caagcacttg tgcaacctat ggagaaccac aatatactcc aattgatgaa
     3721 aaacactctc aaaatcctat taacgcctat ggaagaacta agcttatgat agaacaagtt
     3781 tttgctgact atgaaaaagc ttatggttta aggcatattt ctttaagata ttttaatgct
     3841 gcaggtgcaa gtgaggatgg gcttatcgga gaaagtcatg aacctgaaac tcatttaatt
     3901 cctttagttt taaaggctat aaaaggagaa attcctgcta taaatatttt tggaaatgat
     3961 tatgataccg aagatggaac ttgtataaga gattatattc atgtagaaga tttagcgtta
     4021 gctcatcgtt tagccttaga aaatttacat aaatttagcg gttgtataaa tcttggtacg
     4081 ggaataggta caagtgtaaa agaaattatc agcgcagctg aagttgtaag tggtaaaaag
     4141 tgccctataa attatgcacc aagaagggct ggggatcctg caagattata cgcagataat
     4201 aaaaaagcaa aagaaatctt atcttgggaa gcaaaataca atgatattaa agatataatc
     4261 aaaagtgctt gggattggga gaataataga aagtattaag atgaaaaagg taaaaaattt
     4321 aatcgtaggt tgtgggctta gcggggctat tttagctgag cgtttagcta gtaaaggaca
     4381 agaggtttta atcatagata aaagagagca tattggtgga aatatttatg attataaaga
     4441 tcaagagagt aatataactg tgcataaata cggacctcat gtttttcata ctagcataaa
     4501 agaagtttgg gagtatctga gtcgttttac aaaatggcat tattttatgt atagggtgaa
     4561 agcttttata gatggtagag aggtaaatat cccatttaat cttgatactt tacataaagt
     4621 ttttccagaa tatttagcca aagaacttga gcaaaaatta gtaagtaaat ttgcttttaa
     4681 ttctaagatt cctattctag aattaaaaaa tgcaaacgat aaagatttag attttttagc
     4741 tgaatatatt tataaaaaag tttttttggg ttacacggta aaacaatggg gtgtaaaacc
     4801 tgaagaactt gacttttcag ttagtgcaag agttcctgta tatataagtc gtgatgatag
     4861 atattttata gatacttatc aagctatacc aaaagatggt tatacaaaaa tgattgaaaa
     4921 tataatcaat catcctttga taaaagtgca attaaatatc gattttaaag acataaaaaa
     4981 agatatagaa tacgaaagat tgttttatac aggggcgatt gatgaatttt ttgattataa
     5041 atttggaaaa ttgccttaca ggagtttaaa tatagtattt gaaacttttg ataaagagta
     5101 tatgcaatca ggccctcaga taaactaccc tgaaaattat gattttacaa gaagtgttga
     5161 gtataaatat tatcttgatg aaaaatctac taaaaccatg ctttcttatg aatttccttg
     5221 tgaatacgaa gaaggtaaga atgaaagata ctatcctata cctaatgatg aaaatcaaaa
     5281 attatatgaa aaatatttaa aagaatctgc taaacttaga aatgtgcatt ttttaggtag
     5341 gcttggagat tataaatatt atgatatgga taaggctgtg gagagagtgc tgaaggttgc
     5401 aaaagaggtg atattatgaa taaaaaccct ttaatttctt ttatacttcc caattataat
     5461 aacgaacatg ttttggattt attctttgaa aaatttatat ttcataatac ctatgataat
     5521 tatgaattta taattgttga tgatggttct gaagataata gtttagaggt tttgtataaa
     5581 tggaaaaata gtggaaaaat taaaaatatg ttgataatta aggaaccaca cttgggtatt
     5641 attaatgcac ttaataaagc tttattttta accaagggcg aatttatcat acgttgtgat
     5701 ggcgatgcaa ctattgagac ttcatcattt gttgaaaagt ttttggaatt ttattatata
     5761 aacccagaaa aaataggtgt cattacttct aaggttatag ccgataatgg atggctccat
     5821 gctttaggaa gatcggtaat atcagtaaat ggattgctag accgtggcaa aattccaaca
     5881 gaggttatag gaaatagaaa atgggatttt gcgacttctg taagtaagaa ttttgagagt
     5941 atagttaata ttcctgctga agttgataca gctttaggtg tttttacttt ttttgataga
     6001 gaaactgcta taaaaatagg tggttttgat aaaaactatc ctttatggat agaagatgat
     6061 gacttttttt tatcttttag gttgtataat aaaaaatgct tttatctccc aaatatagaa
     6121 atctgtcaca ggttttcttt aaggggtaat aggaatccta atgcttggaa gagaaaaaaa
     6181 acttttttta cattcaagtg gttatacaga aagaatatta agggtgacaa tacttatcat
     6241 aaattattta atataacatt tttaaaaaca aaaattgata atcaaaatga tgttaagcaa
     6301 tattatatat ttaatttaaa agttttaagt ttaaaatata taagctggag atcacaaata
     6361 ttgcaaaata attatctata ttggaatcaa aaatggggat ttaattgttt aaatccagat
     6421 ttaaatttaa ttaaacaaaa atataaaaat acagaaata
//
LOCUS       DAEDTT010000086         6416 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.086, whole genome shotgun sequence.
ACCESSION   DAEDTT010000086 DAEDTT010000000
VERSION     DAEDTT010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6416
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.086"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            57..1916
                     /locus_tag="KLC54_001342"
     CDS             57..1916
                     /locus_tag="KLC54_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HBD9177710.1"
                     /translation="MALDEKIIAYTENPARELLSVASRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIVAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKNLMSFCNQHKN
                     TPLNKTIQITVAQGIDPIESQDESLILTYKEKTKNYTIDEKRSGIIVVDENEVVLKHA
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFAEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDKNYDE
                     EFAILGEQISKLNHKINKIRQYILSSKNGILSVEKKITELKNQGQNVPVQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFYSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            1892..2443
                     /gene="ruvA"
                     /locus_tag="KLC54_001343"
     CDS             1892..2443
                     /gene="ruvA"
                     /locus_tag="KLC54_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HBD9177711.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLASAQATGTSELIKEALKKLG"
     gene            2453..3493
                     /locus_tag="KLC54_001344"
     CDS             2453..3493
                     /locus_tag="KLC54_001344"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HBD9177712.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFVFCDEERRFY
                     HIPSEKMNSKTFSTKAYKNEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKEKLR
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEVYLNEINPNPGSLANYLFKDFNTTLNALADQISLEKMIKINYN
                     FLHSINGQKGKL"
     gene            3553..3768
                     /locus_tag="KLC54_001345"
     CDS             3553..3768
                     /locus_tag="KLC54_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HBD9177713.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VMLSMKEFERLQNAMQLLENIYKNQKA"
     gene            3770..4489
                     /locus_tag="KLC54_001346"
     CDS             3770..4489
                     /locus_tag="KLC54_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HBD9177714.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLSLPQILILHGWGANKELMKQS
                     FCPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLDVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGVNL
                     SPMMYETFKKVVDEDFSEIFAKQKAKSLIFWGKSDEATPLYCGEKMHELLKNSTFYPL
                     EGDHFFFLKHSAFIAQKIKEI"
     gene            4490..5917
                     /locus_tag="KLC54_001347"
     CDS             4490..5917
                     /locus_tag="KLC54_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HBD9177715.1"
                     /translation="MLINALYFVNSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLAYFALIHTPILYFWSKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFAILALRFSFLFNLFSLPFALFSLKIYEFFTNLYYKKQAKAKLRTNENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQIYIAEAGAR
                     LKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEKAFLHSST
                     QKEEDKLISLYDDKLSLIHSSLEGLEFKIDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYELCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKNGDLILFSNDAPSFM"
     gene            complement(5976..>6416)
                     /locus_tag="KLC54_001348"
     CDS             complement(5976..>6416)
                     /locus_tag="KLC54_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177716.1"
                     /translation="PDMSFYPKNEDGAYTKEDLFMSFLKAQNGQPVESPKTTLNPKVE
                     AYNTAMTKESFSTTSVDLTDIMTGKVDFASLLKYELDRGRIAGELYMYEKGMSPKQAL
                     GNWALDAEIKQALANGWKASSESINSYVGSIMDRLNNLIGQTRA"
BASE COUNT         2444 a          908 c          993 g         2071 t
ORIGIN      
        1 aaattgatta aaaattgact ataattacat tcttaatttt ttacaagggg aaagttttgg
       61 ctttggatga aaaaattatt gcctatacag aaaatccagc tcgagagctt ttaagcgtag
      121 cttcacgaac aaaccttagc ttaaatgagc ttgattttag tttattggca ttttctacac
      181 aatatcgttt tggagattta gaatgggaaa aaatctctga aaaagaatta actctttttg
      241 ataaagatga aattttttta aaaaatgatc ttcaaatcaa gcaagaatac aaaatagaaa
      301 ttttccacgg tataaaccaa agcaaagcat ctcaagcagt caaactggtt gcaaataaaa
      361 atttaaccaa aatagttgct caaattgatt ttacaaattt agactttcat gaaaaactag
      421 cactagaact tttgcaaaat atttataaaa agatgttgaa acttaaattt ttaataggta
      481 tccgcatttt tgattttaag aaaaatttaa tgtctttttg caatcaacat aaaaacaccc
      541 ctttaaataa aactatacaa atcaccgttg cacaaggtat tgatcctata gaaagtcaag
      601 atgaatccct gatcttgact tataaagaaa aaaccaaaaa ctacactatc gatgaaaaac
      661 gctcaggtat tattgttgtt gatgaaaatg aagttgtttt aaaacacgcc aaatttaaac
      721 aaggtaaaga aggaaaagac ttaaatttac acaccttaaa agttttagcc gcaaatgaaa
      781 ataaagttaa attttcttgt tcttcggctt ttaaacaagt agagcaagat ggatacacag
      841 aatatatagc tttaaaaaaa ggttatgtag tacaagatgg tgaaaaattt gatattgcca
      901 atgaactaga ttttaatggg gtagatttta aaaatatagg gattataaga gctggactag
      961 acaaaaatgt caaaatcaat ataaaatttc tttcagaagt aaaagatgct gtaaattctg
     1021 gtgttgggat agaatgtgaa gaattaaatg tagtcggaag cgtaggaagc aacactcaac
     1081 ttaatgccac taaaatgaaa attgaaggca ctacacactc taaagccaaa attcaagcca
     1141 aacaagccta tataaaaact catagaggat ttgcggaagc cgaaatttta aatatagatt
     1201 tgctcgaagg tggaacaatc aaagccaaag aagtgagaat taaaaaaagt ttaggcggaa
     1261 atatacaagc tgataaaatc tatatagaaa atttagaaag taataattct tgtgtgtttt
     1321 ttgaaaacac cacaatagaa cgcattaacg gggataacaa taaatttcat gctaaaatta
     1381 aaactcttga taaaaattat gatgaagaat ttgcgatttt aggagagcaa atttctaagt
     1441 taaatcataa aataaataaa ataagacaat acattttatc aagcaaaaat ggaattttaa
     1501 gcgttgaaaa aaagataaca gaacttaaaa atcaaggtca aaatgttcct gtacaatacg
     1561 aaaaagccct aaaagatttc tctttacaaa atcttgaatt aaataaacta caaaatgaag
     1621 aaaaagaact tcttgaacgc aaaaaatctt tacaattaga attaatcaat ttgcaaaaaa
     1681 tgctttttga agcaactttt ataaataaaa gcggcaaatg gactgatatg aatgaaatca
     1741 aattttcact tctagagcct aaagaagata ttttttactc ttcatttgtt aatgaaagtg
     1801 ctaaatttat aggcattaaa aaagtcatac aaaacaacca agaaagtata gaaatacata
     1861 aaaaattaga ttatgaagaa aaggatatag catggttgtc ggcatcgaag gaataatcac
     1921 aaaaaaagaa cctactttta tcattgttaa atgtgctagt ggtttaagct atgggatatt
     1981 tatttctctt ttttgttctg ctaaaattca aacccaagaa aagcatgagt tttttatcac
     2041 tcaaatcatc aaagaagatt ctaataaatt ttatggcttc ttggataaag atgaacaaaa
     2101 aatgtttgaa atgcttttaa aagtcaatgg agtgggtgca aatactgcta tggcggtatg
     2161 ctctagtctt gatgtaaatt ctttttacaa agcgttaagt ttgggcgatg aaagcgtgct
     2221 taaaaaagta cctggaatag gtccaaaaag tgcaaaacgc attatagtag aactttctga
     2281 cacaaaaacc aaacttgaaa atgtaagcga tgataaaagc gaagccttag ccgcacttct
     2341 tactctaggc tttaaacaag aaaaaatcat aagtgtttta gcaagtgctc aagcaacagg
     2401 aacaagcgaa ctcatcaaag aagctcttaa aaaactagga taaaggaata aaatgaaatt
     2461 tgcaatactt tttggcggaa attcttatga acatgagatc agtatagtaa gtgctgtagt
     2521 acttaaaaaa gttatcaatc aaaatttaga atttgttttt tgcgatgaag aaagaagatt
     2581 ttatcacatt ccaagcgaaa aaatgaattc taaaactttt agcaccaaag cttataaaaa
     2641 tgaaaaagaa ctcttcatca aacaaggagg tttttttagc aaaggctttt taaaagaaaa
     2701 taaactagag tgcgaatgcg tgatcaatct tatccatggt agagatggag aagatggaaa
     2761 aattgcggct ttatttgagt tttattctat taaatttata ggacctaggc ttgaagctag
     2821 tgtattatct ttcaacaaag aacttaccaa actttatgcc aaaagcgttg gtgtaaaaac
     2881 acttgattat accatgctaa gaaaaaatca aaactctaaa gaaaagcttc gttttccttg
     2941 tattatcaaa cctgcaagac ttggaagtag tataggtatt agcatagtaa aagatgaaaa
     3001 agatttagaa tacgccaaag atgtaggttt tgaatttgac aatgatcttg tagtagaaga
     3061 atttaaaaac aatatcaaag aatacaatct tgcaggatgt atgatcaatg atgagtttgt
     3121 tttttccatt atagaagagc caaagaaaaa agaattttta gactttgaac aaaaatatct
     3181 tagcttttca ggacacaatg aacttataga agcggattta agcgaagaat taaaagaaaa
     3241 actcaaagac agttttaaaa agatctacaa tcctttgttt aaaggtgctt taatacgctg
     3301 cgattttttt atactggata atgaagtata tttaaatgaa atcaacccaa atcctggttc
     3361 tttggctaat tatcttttta aagattttaa taccacttta aacgctttag ctgatcaaat
     3421 ttcacttgaa aaaatgataa aaatcaatta caacttcctt cactccatca acggacaaaa
     3481 aggaaaatta taagctttta agtcaaaata cgctaaatta tacataaaat ttagcgtatt
     3541 ttaggaagaa aaatgctctc ttttaaacaa gatgaaattt acactgccac cgaagtggta
     3601 agaaatttta gccccattat ggaaaaactc aaaaaaagcg aaagtggaaa aatagttatt
     3661 ttaaaaaata acaaatttga agctgtaatg cttagtatga aagaatttga acgcttacaa
     3721 aatgccatgc aacttttaga aaatatctac aaaaatcaaa aggcttaaaa tggctcaaac
     3781 tcaactttct tataaaaaca aaacttatca aatttcttat gaaattttag gtgatctttc
     3841 cttaccgcaa atacttatct tacacggctg gggagccaat aaagaactta tgaagcaaag
     3901 tttttgtcct tttttgaaag atttttgtca aatttatatg gatttagcgg gttttggaaa
     3961 ttcaagcgtg gaagaaattt taaacactca agattatgcc aatatcacag aacttttttt
     4021 aaaacaaaaa aaactcgatg tctgtttttt catgggacat tcttttggtg gaaaagtaag
     4081 taccctactc gcaaaagaaa aagacactct aatcttactt tcaagtgcgg gaattttggc
     4141 taaaaaatcc ctaaaagtgc gttttaaaat ccgtattttt aaaattttaa aactctttgg
     4201 tttggggaaa ttttatcgct attttgctag taaagatgga gtaaatctta gtcctatgat
     4261 gtatgaaacc tttaaaaagg ttgttgatga ggattttagt gaaatttttg ccaagcaaaa
     4321 ggctaaaagc ttgatttttt ggggaaaaag cgatgaagct acgcctttgt attgtggtga
     4381 aaaaatgcat gaacttttaa aaaatagcac tttttatcct ttagaggggg atcatttttt
     4441 ctttttaaaa cattctgctt tcatagctca aaaaatcaag gaaatttaaa tgcttatcaa
     4501 tgctctttat tttgtcaatt ctttattttt taatttttgt atagcttttt atcttatgag
     4561 tgctttacaa tggtattctt ataaatttaa acgcgtgttt tttcattatc ataaaccttt
     4621 gtggcatttg tattttttat ttattcctta ttttttattc ttagcttttc ctttatattc
     4681 tttggcatat tttgcattga tccatactcc gattttgtat ttttggagca aaggtataga
     4741 taaaaagctt gtttttacaa gtaaggttaa atggtttttt gtttttgttt ttgtttataa
     4801 tgctattttt gctatacttg ctttgcgttt ttcttttctt tttaatcttt ttagccttcc
     4861 ttttgcttta tttagtctta aaatttatga gttttttaca aatttatatt ataaaaaaca
     4921 agccaaagcc aaattaagaa ccaatgaaaa tttaaaaatc atactcatta ccgcaagttt
     4981 tggaaaaaca agtattaaaa attttctata cgaactttta aaagatgact ttaaaagcta
     5041 caaaacacca cgctctgtca ataccttgct aggtatagtt gctgatatca ataccaattt
     5101 aagccaagat actcaaattt acatagctga agcaggtgct agacttaaag gcgatattga
     5161 tgaaatcact cgttttttac aacctcacat cagcatagta ggagagatag gcaatgcaca
     5221 tttagagtat tttaaaagtg ttgaaaatat ccgttcaacc aaacttgaag ccttaaattc
     5281 caaaagacta gaaaaggctt ttttacactc tagcacccaa aaagaagaag ataaactcat
     5341 cagcctttat gatgataaat taagtcttat tcattcaagt cttgaaggtt tagaatttaa
     5401 aatcgatata gaaaataaat cctatgattt taaaagtcaa attttagggg attttaacgc
     5461 gcaaaatctt tgtgtttgta tactttgtgc tcattatctt ggtataaagc tagaaaaaat
     5521 tcaaaagcaa gttttaaata taaactccgt agaacatcgc ttgcaagtgc tttcaagaga
     5581 gcctaaattt atcatagatg atggttttaa tggaaatttt aaaggtatga gcacaagcta
     5641 tgaactttgt aaaagctata aaggacgcaa agttttagta agtcctggta tagtggaagt
     5701 aagcgaagaa gaaaatataa aacttgctaa aatcatcaat gagtgttttg atcttgctat
     5761 cattagcgca caaatcaatg ctgaaatttt caaaaaagag ttaaaaataa aaaccattat
     5821 acttaaagaa aaaagccagc tagttcaaac tctagctaaa gagacaaaaa acggagattt
     5881 aatactcttt tcaaacgatg cgcctagttt tatgtgattc gtataagtat ttgcaaatgt
     5941 catcattttc aatttgactt cgtgcaaata cttctttaag ccctagtttg tcctataaga
     6001 ttatttaatc tatccattat agatccaaca taagaattta tactttcact acttgctttc
     6061 cagccattag caagagcttg tttaatctca gcgtctaaag cccaattgcc taaagcttgc
     6121 ttaggagaca tacccttttc atacatataa agctctccag ctatacgacc tctatcaagt
     6181 tcatatttta ataaacttgc aaaatcaacc ttacctgtca tgatatcagt caaatcaacg
     6241 ctagtggttg aaaaactctc cttagtcata gctgtattgt aagcttctac ttttggatta
     6301 agtgtagttt ttggactctc aacgggttgt ccattttgag cttttaaaaa actcataaat
     6361 aaatcttctt tagtataagc tccatcttca ttttttggat aaaatgacat atcagg
//
LOCUS       DAEDTT010000087         6289 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.087, whole genome shotgun sequence.
ACCESSION   DAEDTT010000087 DAEDTT010000000
VERSION     DAEDTT010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6289
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.087"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(31..591)
                     /gene="ribA"
                     /locus_tag="KLC54_001349"
     CDS             complement(31..591)
                     /gene="ribA"
                     /locus_tag="KLC54_001349"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HBD9177717.1"
                     /translation="MKIKISEIANLPSKWGNFQIQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLESIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            649..1632
                     /gene="hemB"
                     /locus_tag="KLC54_001350"
     CDS             649..1632
                     /gene="hemB"
                     /locus_tag="KLC54_001350"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HBD9177718.1"
                     /translation="MFKRFRRLRLNENLRAMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDKGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKTKSVDNDATLEISAKQALVHARAGV
                     DMIAPSGMMDGIITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETMIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            1629..2549
                     /gene="argF"
                     /locus_tag="KLC54_001351"
     CDS             1629..2549
                     /gene="argF"
                     /locus_tag="KLC54_001351"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HBD9177719.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGTMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSEFYHPTQVLGDLLTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIVAAILGFEFSIAIPKNYKISPEIWEFAMKQALISGAKISLSHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            2546..3037
                     /locus_tag="KLC54_001352"
     CDS             2546..3037
                     /locus_tag="KLC54_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HBD9177720.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSENENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            3024..4379
                     /gene="hemN"
                     /locus_tag="KLC54_001353"
     CDS             3024..4379
                     /gene="hemN"
                     /locus_tag="KLC54_001353"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HBD9177721.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNTNFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILNTILDTKREVVQM
                     HFGGGTPTFFSAKQLQNLILKIRSVFGNFSKDAEISCEIDPRFLNEEQATVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQPFELTQNALNLVRSKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGVGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKVVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            4381..5646
                     /locus_tag="KLC54_001354"
     CDS             4381..5646
                     /locus_tag="KLC54_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HBD9177722.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKIAKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKFNYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVSMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFVSPLELIAKAL"
     gene            5643..>6289
                     /locus_tag="KLC54_001355"
     CDS             5643..>6289
                     /locus_tag="KLC54_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177723.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDTEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQTSMQFKNLKFFSRIFKNENFLSDFKESKQEVVTIKKHEKLEIFKNLSQED
                     QEISFVKIEILNYDSNEDSLSFNLDIFPSGMSYKYGILKGSMHIILQGKTSSTML"
BASE COUNT         2270 a          747 c         1187 g         2085 t
ORIGIN      
        1 ttgcaaaaaa tcataatctt taaaaatcat ttatttaaga tgtcccattt gagtttgttt
       61 tatgtttaaa tactctacat taaaacgatt aggttctatt aaaatcggta tgcgtgtgat
      121 gattttttcc ttaatggact ctagtttctc gggattattt gtgagtaaat taaccttaga
      181 aatttcatag tgtttgagta taaattctac aatttcataa gttctctcat cggctttaaa
      241 gccaagctga tgatttgctt taatcgtatc aaaaccttta tcttgtaaag cataagcatt
      301 aaccttgtta aaaagcccta taccccttcc ttcttgccta agataaatca ccattccgcc
      361 attcttttct atatatttta gtgaaaattc aagctgttcc ccacaatcac actttaaact
      421 tcctaaagca tctcctgtta agcactctga atgaattctt agattgagtg tgtcttttgg
      481 agtattttta aatatacata aatgttcttt atcattttct ttgaaacttt gtatttggaa
      541 atttccccat ttgctaggca aattcgcaat ttctgaaatt tttattttca tttactactc
      601 tctataatca aatttatgtt aagattttag caaaaaaagg acaaaaaaat gtttaaaaga
      661 tttagaagat taaggcttaa tgaaaactta agagccatgg taagggaaaa ttctttaagt
      721 gtaaatgatt tgatttatcc gctttttgtg gttaatggaa cggggataaa aaaagaaatt
      781 tcttctatgc ctgatgtgtt tcaaatgagt ttagatgaaa ttttaaaaga gtgtcaaaat
      841 gtagttaatt taggcattaa agccattata ctttttggcg ttttggaaaa tgagaaaaaa
      901 gacagctgtg gaagcgatgc tttagatgat aaagggcttg ttgcaagaag tataagagag
      961 attaagaaaa attttccaga tctttttata atcagcgatc tttgtttttg tgaatacaca
     1021 gatcacgggc attgtgggat tatcgatcca aaaacaaaaa gcgtggataa tgatgcaact
     1081 ttagaaattt cagccaagca agccttagtt catgcaagag caggggtaga tatgatagca
     1141 cctagtggaa tgatggatgg tattatcact actttgcgca aagctttaga taaggaaggt
     1201 tttgaaaatt tgcctataat ggcgtattct actaaatttg cttcaagtta ttatggtcca
     1261 tttcgagatg tagcagaatc agctccaagt tatggagata gaaaaagcta tcaaatggat
     1321 tttgctaatg gtaaagaagc tttagaagaa agcttagaag atgaagcgca aggagctgat
     1381 attttgatgg taaaacccgc tcttgcttat cttgatgtgg ttaaagaaat atcccttcat
     1441 tctaacttgc ctttgtgtgt ttataatgta agcggagagt atgctatgtt aaaggcagct
     1501 aaaaatgctg gagtgattga ttatgaaaaa gttttatatg aaactatgat agcttttaaa
     1561 agagcaggag caaagcttat catcacttat catgccaaag aattagctaa aatgttaaaa
     1621 ggagaaaaat gaaacatttt ttaactttaa gagatttttc caaggaagaa attttaagtc
     1681 ttgtaaatca cgctagtgag cttaaaaaag agcctaaaaa acttttacaa gataaaactt
     1741 tggcaatgat ttttgagaaa aactctacaa gaacaagaat ggcttttgaa ttagcaataa
     1801 cagagcttgg cggaaaggct ttgtttttaa gcagtaatga tttacaactt agtcgtggcg
     1861 agcctgtaaa ggatacagct agggtgatag gaacgatggt tgattttgta atgatgagag
     1921 tcaataaaca cgaaacttta ctcgaatttg caagatactc caaagctcct gtgatcaatg
     1981 ctttaagtga gttttatcac cctactcagg ttttaggaga tttgcttact attaaagaat
     2041 ggaataaaat gcaaaatggt atagcaaaag ttgcttttat cggagatagt aacaatatgt
     2101 gcaattcttg gcttattgtg gctgcgattt tgggctttga atttagtata gctataccaa
     2161 aaaactataa aattagccct gaaatttggg aatttgctat gaaacaggct ttgatttcag
     2221 gagctaaaat ttccttaagt catgataaat ttgaagcctt aaaggataaa gatgtagtca
     2281 ttaccgatac ttgggtttct atgggtgaag agaatgaaaa agaacgcaag attaaagaat
     2341 ttgaaggatt tatgattgat gaaaaggcta tgagcgttgc caataaagac gcgatattgc
     2401 ttcattgttt gcctgcttat aggggttatg aagtgagtga agaaattttt gaaaaacatg
     2461 cagatgtgat ttttgaagaa gcaagaaatc gcctttatgt ggtaaaagcc ttgctttgct
     2521 ttttggataa tcagagagga agagaatgaa agagctagaa aagtatagca cttgcttaaa
     2581 acgcattgat gaatttagtc aaaatctagg aataaagaaa aaagatagaa cgatttttaa
     2641 aatgaagcaa agcgagaatg aaaacgaaaa atgtttagtt cttgaaaatg gaagttttga
     2701 ttctcctgag ccttggtttg tgatcgatga aaacgatgaa attcacactt tgctttcttt
     2761 acaaagtctt aagaatatac ttgaaagttt aaaacaaagt caaaaagaga attttgaatt
     2821 gcgtttagaa aaggcgattt atcaacaaat tcctgtagat tttaacgatg tttggacggt
     2881 tgctatggat gagatcaagc aaaaggcaca aaatggcacc atggaagtta gtattgatct
     2941 tgaaaaatta atttctaaaa tcaaacaaga gcatccaaat ttatttgtag atatgcaagc
     3001 gatgatagaa agggtaaatc aaaatgagag attataaagc ttttgtaaaa tactctaaag
     3061 caggaccacg ttatacttct tatcctacag cagtagagtt taatacaaat ttcaaatacg
     3121 aagaatatat agaaatttta aaaaagcaag atagatcttt atcgctttat tttcatttac
     3181 cattttgtag gagtgcctgt tatttttgtg gttgcaatgt tatttataca gccaaagaag
     3241 agagtaaaga aaggtattta acttatattt ttaaagagct tgatatttta aatactattt
     3301 tagatactaa aagagaagta gtgcaaatgc actttggggg cggaactcca acttttttta
     3361 gtgctaaaca acttcaaaat ttgattttaa aaatcagatc tgtttttgga aatttttcta
     3421 aagatgcaga gattagctgt gagatcgatc cgcgtttttt aaatgaggaa caagccacag
     3481 ttttaacgca aaatggcttt aatcgtatca gctttggagt gcaggatttt gatgaaaaag
     3541 ttcaaaaaga aattcatcgc atccagcctt ttgaattaac acaaaatgct ttaaatcttg
     3601 taagaagtaa aggcataaag tctgtaaata tggatttaat ttatggtttg ccttatcaaa
     3661 atttacaaag ctttacacaa actttagaaa aagttatgct tttaaaccct gatcgtttgg
     3721 cgatttttaa ttacgctcat gtgccttggc ttaagaaaaa tatgagaaaa tttgatgaaa
     3781 ataccttgcc aagtcctgat gttaagcttg aaattttaga attttgtgag aaatttttaa
     3841 gcaaaaatgg ctataaaatg ataggaatgg atcattttgc aaaagaaaat gatgagcttt
     3901 ttaaagcttt agaaaatgga actttgcata gaaatttcca aggttatact actaaaggcg
     3961 gtgctgattt agtcggtgtt gggcttacaa gtataggtga aggacaaaga cattatgcgc
     4021 aaaattttaa agatatgtca agttatgaag ctgcattaga tagaggagtt ttaccttttg
     4081 aaagaggcgt agctttaagc gatgatgatg agcttagaaa agtagtgatt atggagttaa
     4141 tggcaaattt taagcttgat attaagtcaa tagaaaaaga attttgcatt gattttcagg
     4201 agtattttaa agaggattta aaagctttag aagaatacaa agattttatt aattttgatg
     4261 aaaattttat caaagtcaat gaaacaggtg ttttgcttat aagaaatatt gctatgtgtt
     4321 ttgatgctta tatgaaaaac attagtgaag ataaaaaagt attctcaaaa acggtgtaag
     4381 atgaaattta gtcaaataag tgatgcttgt gttaaatgtg gcaaatgtat acctgtttgt
     4441 actatacatg aagaaaatcg cgatgaaatt actagtccaa gagggttttt agatctttta
     4501 gctgcttata aagagggaag tctagaactt gataaagaag ctaagaaagt ttttgaatct
     4561 tgttttttat gcaccaattg tgttgaagta tgtccaagta aattaagagt agataatgcc
     4621 atagaagaag ttcgttatga tatagctaaa aaatttggta tagcttggta taaaaaactt
     4681 atttttttct ttttaagaag acgcaaaatt ttagatttgg tagctaagct tggctatgtg
     4741 tttcaaagtt gtgcgtttaa aattcaaaat gagaatgaaa atacaggtat gaaggcaaga
     4801 ttttccatgc cttttgttaa aaagggaaga ttacttacaa gttttaataa aaaaagtttc
     4861 ttaaattcta atccaaaatt tatcaataat gatggagaaa aaaccatagg tttttttgta
     4921 ggttgtttgg cgaattattt ttacatagat acggctaatg cagtgcttaa aatcgctaag
     4981 gaattaaaaa tcaatgtgga tttgatgaaa gaacaagtgt gttgtggagc gccgcaattt
     5041 tttacgggtg attttaaaag tgttgaagtt ttggctaaaa aaaatattga gtattttgaa
     5101 aaaaaattag aaaaattaga tgctattata gttcctgagg ccacttgttc ggctatgtta
     5161 aagatagatt atgaacattt ttttataatg caaaatgatt tagactgggc aaaacgcgca
     5221 aaatgtgtgt catctaagat atatatggct agcgagtatt tttataaatt tacttctttg
     5281 gaagaaattt taaaaacaaa aaataaattt aattatagta ttacttatca cgatccttgc
     5341 catgcaagaa aaatgcaagg agtttttaaa gagccaagag aacttttaaa aacaaattat
     5401 cattttgtag aaatgagtaa ttctaatact tgttgcggtt ttggcggggt gagtatgcaa
     5461 acggattatt atgatagagc tttaagtgta gggcttaaaa aagcacaaat gatcgatgaa
     5521 agtaaggcta gtgtggtaag cgccgagtgt tcagcttgca gaatgcaaat ttcaaatgca
     5581 ttagaacaaa attcaagcaa ggttgttttt gttagtcctt tagaacttat agcaaaagct
     5641 ttgtgatgat gaagatagta tttaaaggca aaagttctga atacgaaatt caaagatcgt
     5701 gcttttgtgt tgatgctttt gtgattaaag ataagattga agaacgagat ggcgttgatt
     5761 ttatcacttc aaatgtagat cttttggaat ttagtgatga cagttttact tttgaagaaa
     5821 ttgtaaaaca ttttaatatt tgtgatactg aagatatgat tatcgttgaa gattttgaca
     5881 tgaaatcaaa caaagataat caaaaccaag aagatgatat agaacacaac atcttaaaat
     5941 ccgaaaaaat aatacatgaa aacacaaaac aaacaagtat gcaatttaaa aatttaaaat
     6001 ttttttcaag aatttttaaa aatgaaaatt ttctttctga ttttaaagaa agtaagcaag
     6061 aagttgttac tatcaaaaaa catgaaaaac ttgaaatttt taaaaattta tctcaagaag
     6121 atcaagaaat tagctttgtt aaaattgaaa ttttaaatta tgatagtaat gaagatagtt
     6181 taagttttaa tcttgatata tttccaagcg gtatgagcta taagtacgga attttaaaag
     6241 gctctatgca tattatttta caaggtaaaa cttctagtac gatgctttt
//
LOCUS       DAEDTT010000088         6243 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.088, whole genome shotgun sequence.
ACCESSION   DAEDTT010000088 DAEDTT010000000
VERSION     DAEDTT010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6243
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.088"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..446
                     /locus_tag="KLC54_001356"
     CDS             <1..446
                     /locus_tag="KLC54_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HBD9177724.1"
                     /translation="IRNANTPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLIL
                     SKFEQSNIFTTLLSSTSSLNADYALESRINSFEQILSNNENYAQISISVNFINLENNQ
                     IIAHKIFNTKEKIEKKDIRSTYNAFQKALNKIGNEIIFWVNSNLS"
     gene            502..1002
                     /locus_tag="KLC54_001357"
     CDS             502..1002
                     /locus_tag="KLC54_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177725.1"
                     /translation="MKSDLEIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELATTITMGETMDNTGIYNSTMD
                     FKNLFK"
     gene            complement(1374..2132)
                     /gene="map"
                     /locus_tag="KLC54_001358"
     CDS             complement(1374..2132)
                     /gene="map"
                     /locus_tag="KLC54_001358"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HBD9177726.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPTDKALISCAKDALYHAIDIIHDGMRFKELSAALGEFIHTRGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILSMI"
     gene            complement(2142..2885)
                     /locus_tag="KLC54_001359"
     CDS             complement(2142..2885)
                     /locus_tag="KLC54_001359"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HBD9177727.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALEFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENID
                     LKNHKAKLHFYASSDVESLKNTAKIWLNL"
     gene            complement(2887..3348)
                     /locus_tag="KLC54_001360"
     CDS             complement(2887..3348)
                     /locus_tag="KLC54_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HBD9177728.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYTRPIYNTNKETKLKTIAHE
                     WKKTPYVLGGTSKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLV
                     FFKTGRGPNGMHVGIYMSKGKFIHLSTKGGVKEVELNNSYWKARYIGARRY"
     gene            complement(3357..4526)
                     /gene="nhaA"
                     /locus_tag="KLC54_001361"
     CDS             complement(3357..4526)
                     /gene="nhaA"
                     /locus_tag="KLC54_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HBD9177729.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIVAFVVAGIAILAMLVLNILGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIITAFFIPMQTKNGEAFLEEIYESLKFWLAFVILPLFAFANAG
                     VNLSNIDIGAIFSGVSVGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFAARS"
     gene            complement(4523..5671)
                     /gene="nhaA"
                     /locus_tag="KLC54_001362"
     CDS             complement(4523..5671)
                     /gene="nhaA"
                     /locus_tag="KLC54_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HBD9177730.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSVIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFAAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEHADKLAILIASFLSAIVGFIYLKIVK"
     gene            complement(5813..5995)
                     /locus_tag="KLC54_001363"
     CDS             complement(5813..5995)
                     /locus_tag="KLC54_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HBD9177731.1"
                     /translation="MVSDVSMGNANLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQVSSSSGLDIYA"
BASE COUNT         2393 a         1095 c          771 g         1984 t
ORIGIN      
        1 aaattcgcaa tgcaaataca cctttgtatt taaactcaag agctattgtt tatatagata
       61 atggttttag caacaaatat gcacattatt tctggggaga tttgccaagc aatctttatt
      121 cttttttaat tttgtcaaaa tttgaacaaa gcaatatttt tacaacctta ctttcttcaa
      181 caagctcttt aaatgcggat tatgcccttg agagcaggat taattctttt gagcaaattc
      241 ttagcaacaa tgaaaactac gctcaaattt ctataagtgt aaatttcata aatcttgaaa
      301 acaatcagat aatagctcat aaaattttca atactaaaga aaaaatagaa aaaaaagata
      361 tccgctctac ttataatgct tttcaaaaag ccttgaataa aattggcaat gagattattt
      421 tttgggtaaa ttctaactta tcctaattta ggaacacttt ttgcttttta aatatttagc
      481 aatatttttg aaaggtaaac aatgaaaagt gatttagaaa tatttaaaaa acacttaggc
      541 gaaattcaag gcgtgaatga atttaaagca aatcaaattt gctctcaaat caatgatgca
      601 aatgatttta taggagcact tcaagtgctt gatatgtctt taaaaaaaat agaaaaaagc
      661 attctagaaa gaatagatga aaattcagat gatatgcaaa aaagaactct tgatgccaca
      721 gcatcacaac ttatacaaaa ctgctctttc atgggaacag ccctttttgg aaatattttc
      781 aatgtttatg ttggtaaaaa actttttgaa tttgaaattg ctaatccact tttaattctt
      841 caaacaagta attacgaagg tgtattggcc tatatacaag ataaaagaga tgaaataaaa
      901 atcattctat cagagttagc aaccacaatt accatgggcg aaactatgga taatactgga
      961 atttataact ctacaatgga ttttaaaaat ttatttaaat aagaatagta atcgtttgtt
     1021 ctctttaagc aaatataata tattttagct taaagagatt ttccaaactc ttaaaagaga
     1081 gttaggctac gaataaaaag ggggagggaa atagcctaac ccaaacgaga tcttaaaaga
     1141 tctctttaaa ctaaaataaa tatttagata atttaataat ttttattaaa ttatctaaac
     1201 catatttatg ttttagttta atacgatgtg acattttatt ctaacaacac ttaaactgat
     1261 ataaaaatat catttagtaa cttaaattat taaagaatat tactacaata ttatttaaaa
     1321 aattttaaat ttttaggatt ttaagaaaaa aatattattt ttataattta atatcatatc
     1381 atagaaagaa tttcagcacg cccattaatc acagcaacac aatgttcata atgagccgca
     1441 ttaagcccat caatacttcc agcatcccat tttccattat aatgctttgg tgttccatct
     1501 ttttggcata tcataggctc tatgcaaaac accattccat ttttaatttt agggccactt
     1561 tttgcactcg cacctttttc taaatagttt aaaatttcag gctctccatg aggctttcgt
     1621 cctataccat gcccgcaata tccacgaagc gggacaaaac ctcttgtatg gataaattcg
     1681 cctaaagcag ctgaaagttc cttaaaacgc attccatcat gaataatatc tatagcatgg
     1741 tataacgcat ctttagcaca agagattaaa gctttatcag tgggtgaaac ttctcctata
     1801 gcaatagttc ttgctgcatc cccataatac ccatcaatca aacttcccac atcaagacct
     1861 aaaatatcac cctctttgat aattttatca tctggaattc catggatgca aacttgattt
     1921 aaagatgtac aaatggcacc tggaaaacca taaagtccct taaatgatgg cttggcgcca
     1981 aggcttaaaa tataatcttc tgccatttta tcaatttgtt ttaagctcat tcctatttta
     2041 atttcattct ctaaaaaatt taaagttttt gctacaattt gatttgctat tcttaatttt
     2101 tctatttcat ctggtttttt caattctatc attttatttc cttataaatt tagccaaatt
     2161 ttagcagtat tttttaaaga ttcaacatcg cttgaagcat aaaaatgtaa ttttgcttta
     2221 tgatttttca aatctatatt ttctctttct ttaagaaatt caactatagc atctcctgaa
     2281 tgaattaatt ttgttttatc accaaaatac ttacttaaag aacgtcctag taaagggaaa
     2341 tgagtgcaag cgagtatcaa agcatctgga gttgtgatat ttttaaaata atactccata
     2401 gcactttgca aaaaatctcc ttcaaaaata ccttcttcaa ccataggcac aaaaagccct
     2461 gtagctaaag catttatatt tgtatatcct tgagataaca aacgcttttg atattcttct
     2521 gatttaatgg ttgcttttgt cgcaatgact aaaatttctt tatttttatc atgcaaagct
     2581 tttatcgttg cttcaacccc tgcatcaatt acgccatata ctggaaaatg tgcttttgct
     2641 cttaaagcat ctaaagcata agcactagca gtattgcatg caatgataag catatcaatt
     2701 tgaaattgtt caaaaaattc caatgcttca agacagaact ttataatagt atctttatct
     2761 ttcaccccat aaggaactct tgcggtatct ccataataga taatttcatc aaaaagtcta
     2821 gcttcataaa gagattttaa aacactaagc cctcctactc cgctatcaaa tacacctatt
     2881 ttcactttaa taccttcttg ctcctatata acgagccttc caataagagt tatttagctc
     2941 gacttctttt actccacctt tagtagataa atgtataaat tttcccttgc tcatataaat
     3001 accaacatgc ataccatttg gccctctacc tgtcttaaaa aacaccaaat ctcctgtttg
     3061 caattttgat ttagaaactt ttcttccaga acctaattga gtttttgtag tgcgaggtat
     3121 gcgtatatta agctgagcta atgcgctctg tgtaaatcct gaacaatcag cacctttttt
     3181 actagttcca cctaaaacat aaggagtttt tttccattca tgtgctatag tcttaagttt
     3241 tgtttcttta tttgtattat aaatcggacg agtatagttt aaattttgat aaaaactaca
     3301 tccgcttata aagaatataa tcgtgatgat gaaaaaaata tgcctcatca atccccttaa
     3361 gatcgagcag caaagaattt aagataaata aaaccccaaa tcccagaaca aaatgaagct
     3421 atgagaatag ctaaattatc tgcataatta aaaatatcgc taacttcata cgccaagcca
     3481 tcgataaaca aactcattgt aaaaccaatt cctgtaagta tacaaacccc ataaagttgt
     3541 ttcaaatttg aaccttgggg caaggctgca aatttaaagc ggattgccaa ataagaaaac
     3601 aaaaatacac ccacttgttt acccacaaaa agccccaaga aaatacctac acttacacct
     3661 gaaaaaattg ctcctatatc gatattggat aaatttaccc cagcgttagc aaaagcaaat
     3721 aaaggcaaga taacgaaagc gagccaaaat tttagacttt catagatttc ttctaaaaat
     3781 gcttctccat ttttagtttg catcggtata aaaaatgctg ttatgattcc agctaaagtt
     3841 gcatgcacac cactttttaa aacactaatc caaagaataa ctgagcaaat aaaataaaaa
     3901 gactttcttg ttattcctaa aatatttaaa acaagcattg ccaaaatagc aattcctgca
     3961 acgacaaaag caactattga taattttgtc gtataaaaaa tagctataat taaaatagca
     4021 cccacatcat caaaaatagc caaagaaagt aagaaaattt ttaaacttga tggaatatgt
     4081 ttgccacaca tcattaaaat cgctaaggca aacgctgtat ctgtggctgt aggtatagcc
     4141 caacctttta aagtataagc atctcctata tttaccaaag caaacaacat cgcaggtata
     4201 agtatacccc ctaaagcagc cataaaaggt aaaacaatat ttttaggatt tttaaaatcc
     4261 ccgtgcaaaa attccttttt aagctcaagc cctatagcaa agaaaaatat agatataagc
     4321 ccatcattta tccaaagtaa aaaaggcttg ttaagctcaa attcacctac actaaatccg
     4381 acttttaaat ttagaaattc tcgataatgt tcgctaaaag atccattttg cacaagcaaa
     4441 gcaagcaaag tacaaactat aagtaaaaca ccaccaaaag cctcgtttaa aactaaagtt
     4501 tttaatttat gtactatatt attcatttaa caatcttaag ataaataaaa ccaacaatgg
     4561 cacttaaaaa actagctatt aaaatagcaa gtttatccgc atgttcaaaa atatcactat
     4621 ttttataagc caaaccatca ataaacaaac tcatcgtaaa accaatgcct gttaaaatac
     4681 atataccata aaattttcca tatttaatat tttcaggtag ttttgcaagc ttaagtttga
     4741 tagcaataaa acaaaaagta aaaacaccta gttgctttcc taaaaataat cctagaataa
     4801 ttccaaggct tacaggcgaa aataccgaac caagatgcat atctctgata tcgatcccag
     4861 cattagcaaa agcaaataaa ggcaagataa aataaaccac ccaaggattt aaatccttaa
     4921 gaacttcatg caaataaggt tttttatttt ttgtatcaag cggtataaat aaagaaataa
     4981 tcacaccagc caaagtcgca tgtactccac ttttaagcat agctatccac aatacaacac
     5041 ctactaacac atacaaagaa agatgggtta tgtgataata atttaacaaa agcagagcaa
     5101 atatacaaaa caagcaaata ataatcgcca aagctgaaag ctgatctgta taaaataaag
     5161 caataataac aatagcgccc aaatcatcaa aaatagctaa agaaagtaaa aaaagcttta
     5221 aacttgtagg aattttattt cctaaaagca tcaaaatgcc cactgcaaaa gctatatcgg
     5281 ttgctgtagg tattgcccaa cctttcatag caaaatcatg ggaataatta atagcagcaa
     5341 aaattaaagc aggagtaatc atacccccta aagctccaaa tataggtaaa gatacagctc
     5401 ttatattttt aagctgtccg cgtaaaattt catattttaa ctcaagccct atacatagaa
     5461 aaaatatagc tatcaaacca tcatttatcc ataaatccaa cgactttgaa atttgaaaat
     5521 gatcaaatcc tactgtaaaa ttagcatgaa aaaaatctgt ataaataaca cttaaagaag
     5581 aatttttaca taataaggct aaaaatgtaa aaaatataag caaaatacca gggaaagttt
     5641 cacttaaaac catcttcttt atcatttgca tccttgctcc taaataaata ttataaaaat
     5701 ttaatacgat aaataaaatg gcaaaattat aacgaaaaaa tactaaagaa ataattattt
     5761 aaaaaaacaa gctcaagata ccaacaagtt cttaagcttg ttcttaagat atttaagcgt
     5821 aaatatccaa accactagag ctagaaactt gtggagcgga ggcttgagag acaccttcca
     5881 taccttcgat gagttcattc atcaatgcct cgtttgtgtc catagatttt ttcaaaactg
     5941 aagtattaac agcagtcatt aaattagcat tacccataga aacatctgaa accatatcat
     6001 cctcctttta gattgagtct taagacttta tttaaatcgg atgatatttt taaaacttaa
     6061 tattttttac taaacttttt aaaatttttc aaggaaacca atatctgaaa ttaaaaatca
     6121 taaatttttt aagataaaat cctattttaa aaatttttac actatgaaac aataagcaaa
     6181 atataaatgg ttgatacttt tagaagcaaa ttaaatagat aaaattttac ttcaataaat
     6241 tta
//
LOCUS       DAEDTT010000089         6152 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.089, whole genome shotgun sequence.
ACCESSION   DAEDTT010000089 DAEDTT010000000
VERSION     DAEDTT010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6152
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.089"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..444
                     /locus_tag="KLC54_001364"
     CDS             <1..444
                     /locus_tag="KLC54_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177732.1"
                     /translation="PDMSVYPQNEDGSYSKEALFMSFLKAQNGQPVESPKTTLNPTIE
                     AYNRAMAKESFSTTSVDIGDIMTGKVDFASLFKYLASKNGKLEGQLYMYENNISKESA
                     MGNWALDAEIKQAIANGWKAKPSTINSYADSIMDRLNNLLGQTRV"
     gene            538..1308
                     /locus_tag="KLC54_001365"
     CDS             538..1308
                     /locus_tag="KLC54_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HBD9177733.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGRASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDERKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILVPFQENPEFWGIAVQKGNAELKKE
                     LDEFIAESKKDGLFDSLGEKYLKDVKDTFKKNNLEFFF"
     gene            complement(1324..2058)
                     /gene="fliP"
                     /locus_tag="KLC54_001366"
     CDS             complement(1324..2058)
                     /gene="fliP"
                     /locus_tag="KLC54_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HBD9177734.1"
                     /translation="MKKILLFLLLSMSLFAAEATIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            2202..3491
                     /gene="glmU"
                     /locus_tag="KLC54_001367"
     CDS             2202..3491
                     /gene="glmU"
                     /locus_tag="KLC54_001367"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HBD9177735.1"
                     /translation="MKTSILILAAGLGTRMKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALRGFEPKNERVLILCGD
                     MPLVEQTSLEALLSNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQEKIKKYWMQQGVIFHLPQSTFIGTDVEFMGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGALFINRAEHKMIKDYYYKKFQK"
     gene            3488..4642
                     /gene="coaBC"
                     /locus_tag="KLC54_001368"
     CDS             3488..4642
                     /gene="coaBC"
                     /locus_tag="KLC54_001368"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HBD9177736.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNSLLKFAS
                     KMSFEALADEILCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKPLIIAPAANTNMFHHFSTQNSLKILKENKALIIEPICKVLACKDEGVGAL
                     AEVKDIFNITKRELLKEKFWCNKSVVITGGGTRERIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLSHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            4639..5256
                     /locus_tag="KLC54_001369"
     CDS             4639..5256
                     /locus_tag="KLC54_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177737.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFIFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGISVFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            5260..5928
                     /gene="uppS"
                     /locus_tag="KLC54_001370"
     CDS             5260..5928
                     /gene="uppS"
                     /locus_tag="KLC54_001370"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HBD9177738.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            5925..>6152
                     /locus_tag="KLC54_001371"
     CDS             5925..>6152
                     /locus_tag="KLC54_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HBD9177739.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKPFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLPISLLINE"
BASE COUNT         2245 a          751 c         1144 g         2012 t
ORIGIN      
        1 cctgatatgt cagtttatcc acaaaatgaa gatggaagtt attctaaaga agctttgttt
       61 atgagttttt taaaagctca aaatggacaa cctgttgaga gtccaaaaac cacacttaat
      121 ccaacaatag aagcttacaa tagagctatg gctaaagaga gtttttcaac tactagtgta
      181 gatataggtg atattatgac aggcaaagta gattttgcaa gtctatttaa atatctagct
      241 agtaaaaatg gaaaattaga agggcaactt tatatgtatg aaaataacat ttctaaagaa
      301 tctgctatgg gtaattgggc tttagatgct gaaattaaac aagccattgc caatggctgg
      361 aaagcaaaac ctagcaccat taattcctac gctgattcta taatggatag acttaataat
      421 cttttgggac aaactagggt ttagaagttt taatttttta agtttgaaac aaattgctaa
      481 taacaaaata agataaaatt agtataattt ttttacaaaa aattttgaaa ggaaattatg
      541 aaaaaaatta ttttgatttt tatctctttt tttgctttaa atttgagtgc aaaagatttg
      601 gttgtaggaa tggagcttgg atatccgcct tttgaaatga gcgataaaac aggcagagca
      661 agtggaatta gtgtggattt tttagaagct tttgcaaaga aaaacggcta taaacttgta
      721 gtaaaaaata tcgcttggga tggtttgata cctgctttaa aaacagccaa gatagatctt
      781 atcatgtctt ctatgacaat taccgatgag agaaagaaag tggtggattt tagcattcct
      841 tatgctaagg caaatttggc tattttaact cctttgaact ctgatattac aaatatcaaa
      901 gatttagata aaaagggcaa agttttggct ttaaagcgtg gctctacagg acatttatat
      961 gcggttaaaa atttaaaaaa tgcaactatt aatttatttg ataaagaaaa tgctgctatt
     1021 ttggaggtga ttcaaggtaa ggctgatgga tttttttatg atcaacttac gatttatcgc
     1081 acttggcaaa aacatcaaga tacaactaga gccattttgg tgccttttca agaaaatcct
     1141 gagttttggg gtatagcagt acaaaaaggc aatgcagaac ttaaaaaaga gcttgatgaa
     1201 tttattgcag aaagcaaaaa agatgggctt tttgattctt taggagaaaa atatcttaaa
     1261 gatgttaaag atacttttaa aaagaataat ttagaattct ttttctaaga aggattttcc
     1321 ttcttaagtt acaaagcttt ccacaagcct ttgcactagc aaattccatc catccactaa
     1381 tacaaaaatc aagagtttaa aaggtaaaga gatcatagta ggaggtagca tcatcatacc
     1441 catagccatt aaaactgagc ttacaaccat atctatgact aaaaagggta ggtagattaa
     1501 aaaccctatt tcaaaagcgg ttttaagctc tgaaatcata aaagcaggaa ctaaaactgt
     1561 aaggggaaca tcatctatgg ttttgggatt gggtagattg cgtatgcgat aaaaaagggc
     1621 taaatctttt tctcgagtat ttttaagcat aaaatcttta aaaggctttg ctccttttat
     1681 aaaagcctct tcatagccta ttttttctgc taaataaggt tttatacctt cattatagga
     1741 ttttgtagct acaggttcca tgataaaaaa agttaaaatt aaagccaagg ttactaaaat
     1801 agtgttaggt ggcatacttt gcgtccccat agcttgtcgc aaaaatgaaa ataccacaat
     1861 aagacgcaag aaagaagtca taacaaaaac tatacttgga gcgagcgcaa gtatggttaa
     1921 aacaatcact atatttaaag tagtaacaag ctgattaggt gtattgggtg cacttaagct
     1981 taaatttact gtagggatag ttgcttcagc agcaaataag ctcatgctta aaagtaaaaa
     2041 taataatatt tttttcaaaa tttaaaaacc ttttttttgt tttttattaa agaaatttaa
     2101 attttatctt ttgatgacta aaaactagtt taagggtatt aggattttaa ctttaaactg
     2161 ctaaaatagt cttttagact tcttaataac aaaggtaaaa aatgaaaact tctattttga
     2221 ttttagcggc aggattaggc actagaatga aatcacaaaa gccaaaggtt ttgcaagagc
     2281 tttgtcaaaa aagtatgatt ttacacattt taaaaaaggc ttttgcttta agtgatgatg
     2341 taagtgtagt tttatcgcat caaaaagaac gcgttgaaaa agaaatttta gaatattttc
     2401 caaaaacaca aattttagag caagacttgc aaaattatcc aggaactgcg ggagctttaa
     2461 gggggtttga gcctaaaaat gaaagagtgt tgattctttg tggcgatatg cctttggttg
     2521 agcaaacaag tttggaagct ttgttgagta ataatgcaaa attaaatcta gcagttttta
     2581 aagcaagaga tcctaaaagt tatggcagag tggtgataaa aaacgatagc gttgaaaaaa
     2641 ttgttgaatt taaagatgca aatacacaag aaaaagagat aaatacttgc aatgctgggg
     2701 tttatgtgat tgactctagg cttttaaaag agcttttacc tttgattgat aacaataatg
     2761 cggcaaaaga gtattattta accgacattg taaaactagc aaaagaaaaa gatgtgatga
     2821 ttaaagcggt ttttgtagat gaagatgaat ttatggggat caatgataaa tttgaactca
     2881 gtatagctga aaatttcatg caagaaaaaa ttaaaaaata ctggatgcaa cagggtgtga
     2941 tttttcattt accgcaaagc acttttatag gtacagatgt tgaatttatg ggtgaatgcg
     3001 aagtatatga aaatgtaagg atagagggta aaagtaagat tataaactct atcattaaaa
     3061 gttcaagcgt gatagaaaat tccattgtag aaaatagcga tgtggggcct ttggcacatt
     3121 tgcgtccaaa ttgtgagtta aaaaacactc atataggaaa ttttgtagaa tgcaaaaatg
     3181 caaagttaaa taccgtaaaa gcagggcatt tgagctattt gggagattgt gagatagata
     3241 gtggaaccaa tataggctgt gggactatta catgtaatta tgatggggta aaaaagcata
     3301 aaaccatcat aggaaaaaat gtttttgtag gttcggatac gcaatttatc gcacctgtaa
     3361 aaatcgaaga tgaagtgatc atagcagcag gaagcacagt aagtgtcaat gtagaaaaag
     3421 gtgctttgtt tatcaataga gcagagcata agatgataaa agattattat tacaagaaat
     3481 ttcaaaaatg aaaaccatac ttttagccat tagtggcagt atagcttttt ataaatctta
     3541 cgagcttatt tctttgttta aaaaagaagg ctttagggtg aaagttttgc tttctaatag
     3601 tttgttaaaa tttgctagca aaatgagttt tgaagccttg gctgatgaga ttttatgcga
     3661 ggaaaatgaa agttggcaaa attcaaacaa tcacatagct tttagcaagg atgtagatct
     3721 tgttttattt gctcctgcaa gtgttaattc tatcaataaa cttgcttttg gtatagcgga
     3781 taatcttttt atccaaacct taatcgcagc aaataaacct cttatcattg ctcctgcggc
     3841 aaatacaaat atgtttcatc atttcagcac gcaaaattct ttaaagatac ttaaagaaaa
     3901 taaagctttg attatagaac ctatttgtaa agttttagct tgtaaagatg aaggcgtagg
     3961 agccttagct gaagttaagg atatttttaa tatcaccaaa agagagcttt taaaagaaaa
     4021 gttttggtgc aataaaagcg tagttatcac aggtggtggc acaagggaaa gaatcgatga
     4081 tgtgcgttgt gtgagtaatt tttcaagtgg aaaaatggca aaggccatag ctgatgcttt
     4141 ttatttttta ggagctaggg taaaactttt aagctctgtg gaatttgata cgccttatga
     4201 gctttgcaaa tttgaaagtt ctaaggatct aaaggagctt ttggataaaa atttaagtca
     4261 tgactttttg attatgacag ctgcagtgag tgattttatc ccacaaagtg taaaaggaaa
     4321 aattaaaaaa aatgagcatt tgcagggttt aaatttacat ctatctttaa atgaagattt
     4381 gcttaaaact tgtaaatttc aaggcaaaaa gataggtttt aagatggaat ttgattctca
     4441 aaatgcctta gaaaatgcga aaaaatcttt aaaagataag caacttgata tggtttgtct
     4501 taatatcatt gatcaaaaaa attattttgg aagtgatcaa aatgaacttt attttatcac
     4561 tttaaacaat gaaaataaaa gcactttgca aagcaaagaa aaattggcat ttgaattagt
     4621 aaaatggtgt gaaaaattat gagtatgatt aattctacct tgcctataca aatgaaagtt
     4681 ttggctaaat caggttatgg acattatacg cttttgttaa atcacaaaaa gattcaaacc
     4741 aaaagcatga tagagcttga aattggtgct gaatatttag ccgaacttta tatgcaaaat
     4801 ggtggagtta tacaatttaa acatctttca aagcgtccta atttcaaacc ttttgaagag
     4861 ggattggctt tgataatcgc tattttagag gataaaattt cttataaaaa atttatcata
     4921 caaaatcttt tagattgtaa agatatagag cgttatcaga tattaaaaga aatgcttttt
     4981 gcaagttttg aaaatattta tcatattcct tttatctttg aaaataaatc ttgcttattt
     5041 caaatgcgta aaagagcaaa atatttagaa atttacttat attttagtgt ttttggagct
     5101 ttgaaaattt taatagactc gcaaggcatt agtgttttta caccttttgc taaggtgcaa
     5161 aaatttttaa atgaacattt agattttaat gtatcgcaag aaaacaagat tgaacctttg
     5221 tttgttttta aaaggctttt tgattttaaa ggatgaaaaa tgaatgaatt aaaacacctt
     5281 gctgttgtta tggatggcaa taggcgctgg gctagagcta agggtttttt ggcaaaactt
     5341 ggatattccc aaggagtcaa aactatgcaa aaattgatgg aagtttgcat ggaggaaaat
     5401 atttcaaatt taagcctttt tgcttttagt acggaaaatt ggaagcgccc taaagatgaa
     5461 attgatttta tttttgaact tttagatcgt tgtttagatg aagctttaga aaaatttgaa
     5521 aaaaataatg tgcgtttaag agctataggt gatttatcgc gtttggaaga taaagtaaga
     5581 gaaaaaatta ccttagttga agaaaaaaca aagcattgtg acgcactttg tgttaatttg
     5641 gctataagtt atggtgcaag agatgaaatt ataagagctg ctaagcgtgt gattgaaaaa
     5701 aaacttgagc taaatgaaga aaatttaacg caaaatttag atttaccttt agatgtggat
     5761 ttgatgcttc gcgttggaaa tgccaaaagg ctttcaaatt tcttactttg gcagtgttca
     5821 tatgctgaaa tttattttag tgaaacttta tttccatctc ttaccaagag agaatttaaa
     5881 aggattatta aagaatttag aaatagagaa agaacttttg gaaaatgata tttttcataa
     5941 taattctagg ggcttgtttg ggttcttttt gcacaagttt ggcaagtagg ataattgaaa
     6001 aaaagccctt ttttatctcg cgctcttttt gtttttcttg cgatacaaaa ttaaaatact
     6061 atgaaattat tcctattttt tcttatattt ttttaaaagc aaaatgtcaa acttgcaaat
     6121 gtcatttgcc tatttctttg ttaatcaatg aa
//
LOCUS       DAEDTT010000090         6129 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.090, whole genome shotgun sequence.
ACCESSION   DAEDTT010000090 DAEDTT010000000
VERSION     DAEDTT010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6129
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.090"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            78..1133
                     /locus_tag="KLC54_001372"
     CDS             78..1133
                     /locus_tag="KLC54_001372"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HBD9177740.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAREIFIAAVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESSFLK
                     TLSSRELAAGMAEFIKMAAMFDDSILDFIEKIDEKSFLNATCENEIFTQIIARSIELK
                     SRVVEQDEKESGLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGF
                     LDKMQSQKIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLAGPLGKGLI
                     KGDISKEDIIATLREFQ"
     gene            1130..2701
                     /locus_tag="KLC54_001373"
     CDS             1130..2701
                     /locus_tag="KLC54_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HBD9177741.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLEEQLSLLKEYKDLNFAQ
                     SLSAPDNIETLSKLTNPLAIIGAFSHIKKLKGEKEEYIFKFNDFKNLVDKIREKNSEL
                     KELVGLKPSVENIEALKASDKKLEEFEQALNFASVSYSVYEKKIDEELSRVSAEIKVQ
                     SLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERYYTATKIINFININIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGGSFRVGDRVKVFQNDTTYIG
                     DIIDISFLRITLYEELTLETYNKNRRSGRIIFIPNNYVFTNLLANYTHHGMKTVLDGI
                     DISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARLQHEYSIKNPKVEPRFFMFF
                     EHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNKHKDIKIAYPSQNLYLGNLNQNHF
                     EQHHENMHFHARNKD"
     gene            2698..3948
                     /gene="mtaB"
                     /locus_tag="KLC54_001374"
     CDS             2698..3948
                     /gene="mtaB"
                     /locus_tag="KLC54_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HBD9177742.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTSLGKLLQKMGQISGIKRIRL
                     GSLEPAQIDESFLEILDETWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEEVWQEALKKFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNILKSIVEKNNYEFRKKNQVPLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIFISQYEAQEKSNFANLKG"
     gene            3952..5568
                     /locus_tag="KLC54_001375"
     CDS             3952..5568
                     /locus_tag="KLC54_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HBD9177743.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLAKVPVEVKKDNTLWVFFILLVFIIAL
                     FISLGYFARKKELAKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNVNLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNDEEKKIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLEEPNLNEQKKEMDEFLN
                     SMKDKILKLSELLLEKEKIEHDDVKNIMQV"
     gene            complement(5576..5992)
                     /locus_tag="KLC54_001376"
     CDS             complement(5576..5992)
                     /locus_tag="KLC54_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HBD9177744.1"
                     /translation="MKIKFLSIITILSLSLNADIIISADNLPSVSKEFLQHNFKAPIG
                     IVQKDKNSYEVYLSDGTELEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKNEFPNIK
                     AREIERKINHYKIKLDNDVKILIDFNGTILHKEIDD"
BASE COUNT         2264 a          650 c         1094 g         2121 t
ORIGIN      
        1 aaaattacca acttttcata ccggtagaat aaataattaa ttaaatgtga tagaataaac
       61 gcaaaaagag tagttcaatg caagtagaag ttaagttaaa agaaaatgct tataaggttt
      121 atattgatga acttgaagaa ttagaatttg atagtaaggt ttttatactt tcaaatccta
      181 agatttcagg tcttcatttg aaaacattac tttctaaaat taaggcaaga gaaattttta
      241 ttgccgctgt aaaagatggt gaagaatata aaaatttaag caccatggaa gaaattttaa
      301 accaaatgtt taattctaaa ttggatagaa aaagcgtgct tataagtttt ggtggtggcg
      361 tgattagtga tatgggcgga tttgctgcta gtatttatca aagaggcatt gattttataa
      421 atattcctac tacactttta gcttgtgttg atgcagcagt aggtggaaaa acaggtgtta
      481 ataataattt tggtaaaaat cttattggca ctttttatca acctaaagct gtatattgtg
      541 agagttcttt tttaaagact ttgagctcta gagaacttgc tgcaggcatg gctgaattta
      601 ttaaaatggc agcaatgttt gatgatagta tacttgattt tatagaaaaa attgatgaaa
      661 aaagtttctt aaatgctact tgtgagaatg aaatttttac tcaaattata gcaagaagca
      721 tagaacttaa atcaagggtt gttgaacaag atgaaaaaga atcagggctt agaatgcttt
      781 taaattatgg tcatactttt gctcatgtta tagaaaattt tacagattat aagctttatt
      841 tacacggaga agcggtggct ataggtatgg ttatggcaaa tcaattggct ttaaatttag
      901 gatttttgga taaaatgcaa agtcaaaaaa taaaagatat tttacttaaa ttcggtttgc
      961 caatatcata taaaatcaac aatgtagatg aattttatga agcttttttc atggataaaa
     1021 aaagctctaa taaaaaaatc aattttgttc ttgctggccc tttgggtaag ggtttgataa
     1081 aaggtgatat ttctaaagaa gatataattg caactttaag agaattccaa tgaaaaaaat
     1141 tattatttta accttttttg ttgtttttgc ttttggtgat gtaaatcgga ctattattaa
     1201 taatataaat gagaaaatta atactttaaa tactgtaatc agtgctagta tttggaatat
     1261 acgttatgaa aattttataa aatatcaaga tataaatgat gaattaatca ttttaaatct
     1321 taatttaaaa aagacttccg atattcacca acaagaagaa cttaaacgca agatagcaaa
     1381 tttagaagag caattgagct tgcttaaaga atataaagat ttaaattttg cacaaagtct
     1441 tagtgcccct gataatatag aaactttatc taagcttact aatcctttgg ctattatagg
     1501 agctttttct catattaaga aattaaaagg agaaaaggaa gagtatatat ttaaatttaa
     1561 tgattttaaa aatttagtag ataaaatcag ggaaaaaaac tcagaactta aggaattagt
     1621 tgggcttaaa ccaagtgttg agaatataga agctttaaaa gcttcggata aaaagttgga
     1681 agaatttgag caagctttaa attttgctag tgtttcttat tctgtttatg agaaaaaaat
     1741 tgatgaagag ctttctcgag taagtgctga gattaaagtt caaagcttaa gggctgtaaa
     1801 tatacttgtt gctattgtta ttgttatagc tatagctttt atgttgaaat ttattgctaa
     1861 aaaatatatt aaagatagtg aaagatatta tactgctacg aagattatta attttattaa
     1921 tataaatatt atttttctta ttttgctctt tgcttatata gaaaatatta cttatcttgt
     1981 aactatactt ggttttgctt ctgcaggctt agctattgct atgaaagata tgtttatgtc
     2041 tatgcttgga tggtgtgtga ttatttttgg cggaagtttt agagtagggg atcgtgtaaa
     2101 agtttttcaa aatgatacta cctatatagg agatattata gatatttctt ttttacgcat
     2161 tactctttat gaagagctta cgcttgaaac ttataataaa aatcgtcgta gtgggcgtat
     2221 tatatttatt cctaataact atgtttttac aaatttgctt gctaattata ctcatcatgg
     2281 tatgaaaacc gtgcttgatg gcattgatat aagtgttact tttgatagca atcttgataa
     2341 ggcacaagaa attgtggaaa atattgtgac acgtcatgcc aaaggttata ctgagcttgc
     2401 tagaaaaaat atagctcgtt tacaacatga atatagtatt aaaaatccta aagtggagcc
     2461 aaggtttttt atgttttttg aacattgggg aatgcgaatt tctgcatggt atatgaccaa
     2521 tgcttatgcg gctttagtat taagaagtac gattagtaaa gagattataa aagaatttaa
     2581 taagcataaa gatataaaaa ttgcttatcc atcgcaaaat ttatatttag gaaatttaaa
     2641 tcaaaatcat tttgaacaac atcatgaaaa tatgcatttt catgcaagga ataaagattg
     2701 aaagaaaaag ttttttttaa aacctttggg tgtcgcacaa atatttatga tacagagctt
     2761 ttaaaaagtt atgtaaaaga ttatgagatt ataaatgatg agaataaagc acaaattatc
     2821 gttgtaaatt cttgcacggt tacaaatgga gctgatagcg ggataaagtc ttatgtaaat
     2881 accatgcaaa aaaaaggcat taaagttata cttacaggtt gtggtgctgt aagcaaaggt
     2941 aaggagcttt tagataaaaa acaagttttt ggagtgcttg gagcgtcaaa taaagataaa
     3001 atcaatgaat ttttaggagc aaagacaagt ttttatgaac ttggaaattt aaattttatt
     3061 gataaagata tagtttgtga gtatgaaaat cataccaaag cttttgtgaa aattcaagaa
     3121 ggttgtgatt ttgcttgttc ttattgtatt atccctagcg tgcggggtaa atcaagaagt
     3181 gtagatgaaa aagctctttt aaaacaagtt gaaattttgg gggctaatgg ctatagtgaa
     3241 attgttttaa cagggactaa tataggttca tatgggctta aaaatggcac aagtttaggc
     3301 aagcttttgc aaaaaatggg acaaatttca ggtataaaac gcataaggtt aggtagttta
     3361 gaacccgcac aaattgatga aagtttttta gaaattttag atgagacttg gcttgaaagg
     3421 catttgcata ttgctttgca acatacaagt gaaaaaatgc ttcgcataat gcgaagaaga
     3481 tcgcatacgg ataatgattt aaagcttttt aatactatag caagcaaagg atatgcttta
     3541 gggacggatt ttatagtagc tcatccaggc gagagtgaag aagtgtggca agaagctttg
     3601 aaaaaattta aagaatttcc actcactcat attcatgctt ttatttttag tcctagaaac
     3661 aacacgcatt ctgctaccat gaaagatgtg ataaatggaa ctttagctaa agaaagatta
     3721 aacattttaa aatccatagt agaaaaaaat aattatgaat ttagaaaaaa aaatcaagtt
     3781 ccgcttgaag ttttggtgga aaatcaaaaa gatggttttt ttgaggggta tgatcagttt
     3841 tttaacaaga tcaaaattaa aagtgataaa gatatagcta aagaatggat ctttatatct
     3901 caatatgaag cgcaagaaaa gtctaacttt gcaaatttaa aaggctagat aatgaaaaat
     3961 aaaaagataa ttttagcatc ttttatggtt ttatgtatgc ttttgggaat tttatatttt
     4021 aaaaatgaac ctaaatatat agatgaaaat ctttatcaaa gtctgttaag tcaaaattta
     4081 atccaaaaag ctgtgattga taaagacgaa atttggctta aggcggaagg tgaaaattac
     4141 gtaattataa aagatggcat agatataaaa acacttttag caaaagttcc tgtagaggtt
     4201 aaaaaagata acacgctttg ggtgtttttt attttacttg tttttattat cgcacttttt
     4261 ataagtcttg gctattttgc tcgtaaaaaa gagttagcta aatatccaat atcaaataag
     4321 aatcaaaatc acactcaagc tcaaaattca aatataaatt tagaaagttc tcatataaaa
     4381 cctgtgattt caaatattac ttttaatgat gtagcaggtg ttgatgaagt taaaatggag
     4441 ctaagcgaac ttgtggattt tttacaaaat cctaaaaaat ataaagaatt tggtgtaaaa
     4501 atgccaaaag gtgttttaat ggtaggccca cctggtgtag gaaaaacatt gatagcaaaa
     4561 gcagttgcag gagaagcagg ggtgccattt ttttatcaaa gcggttcaag ttttgttgaa
     4621 atttatgtag gtatgggtgc aaaaagagtt agagagcttt tttcaaaagc taaaatgatg
     4681 gctcctagta tagtttttat cgatgaaata gatgctgtag gtaaggcaag aggagaaatg
     4741 tcaaatgttg aaagagatag cactttaaat caacttttaa ctcaaatgga tggttttgag
     4801 gataatagtg gggttatagt tatagctgcg acaaataaaa tcgaacttat ggatcctgct
     4861 ttattgcgtt ctgggcgttt tgataggaga atttttttat ctttgcctga ttttaaggat
     4921 agacttaaaa ttttagaaat ttatatgaaa gataaaaaca ataatgtcaa tttaaataaa
     4981 atcgccaaag caagcgtagg ttttagtgga gcagggcttg aaactttggt caatgaagca
     5041 gcaattaatg ctttaagaag aaatagtgct ttagtcgagg aaagtgattt ttatgctgta
     5101 ttaaataaag ttcttttagg caagaaaaag attttaagtt ttaatgatga agagaagaaa
     5161 attcaagcca cttatcaggc tgcaaaagct ttgagtgcgt attattttga cataggattt
     5221 gaaaaaatca ctctcattga agatcgtttt aaagaatatg agcataatat aagatcaaaa
     5281 tcagagctta tcaatcgtat aaaagtttat ttggctggtt ctagagctat gagattgatt
     5341 tataatgaaa gttatactaa ctcgcaagat gattttttaa agattaaaga attgcttgat
     5401 tatatgttga gttttgatat gttagaagag ccaaatttaa atgaacaaaa aaaagaaatg
     5461 gatgaatttt taaattctat gaaggataaa attttaaaat tatcagagct tttgcttgaa
     5521 aaagaaaaga tagaacatga tgatgttaaa aatataatgc aggtttgatt atattttaat
     5581 catcaatttc tttgtgcaag atagttccat taaaatctat aagaattttt acatcgttat
     5641 caagtttaat cttgtaatga ttgatttttc tttcgatttc tctagctttt atatttggaa
     5701 attcgttttt aatgatattg gctaaatttt gaggtaaaaa atctagatca aaaggaaagg
     5761 ctttattttc aatttccttc caagctccat ctatgtcaaa ttcaagttct gtcccatcgc
     5821 taagatagac ttcataggaa tttttgtctt tttgtacgat ccctatgggt gctttgaaat
     5881 tatgttgtaa aaattcttta gaaacacttg gcaaattatc agcagaaatt attatatcag
     5941 catttaaaga taaacttaaa atagtaataa tacttaaaaa tttaattttc aatatttttc
     6001 ctaattattt tttagtaaaa ttgtaaagaa tttatgtgaa ttttatgtga attttaagac
     6061 aatattataa aaaataaagg ttttatactt tgcttacaat ttttttaatt tttttaaata
     6121 ttttatgtt
//
LOCUS       DAEDTT010000091         6071 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.091, whole genome shotgun sequence.
ACCESSION   DAEDTT010000091 DAEDTT010000000
VERSION     DAEDTT010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6071)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6071)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6071
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.091"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..412
                     /gene="rsmG"
                     /locus_tag="KLC54_001377"
     CDS             <1..412
                     /gene="rsmG"
                     /locus_tag="KLC54_001377"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HBD9177745.1"
                     /translation="ILDFYDFSKAKNIADIGSGAGFPAVFLAFLLQNNFHLFEPNPKK
                     AAFLRTLKIECELSNLHIYKEKVQEYQNIFKADIITSRALMDVKPLLEICKNLKDENT
                     VFILWKGSEIYQELENIKDYEIFENNLRKYCILK"
     gene            complement(428..1000)
                     /locus_tag="KLC54_001378"
     CDS             complement(428..1000)
                     /locus_tag="KLC54_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177746.1"
                     /translation="MKKILVSVLSSCLLASALSAVSFKEDSLKVSFEGYKTKDMIGTK
                     GEFKNVEYKFSKNTKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDT
                     DIKVVFQDVIAGENKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSK
                     ALKALSDVAAGHGGISWPLVDISFNADLAE"
     gene            complement(1090..2187)
                     /locus_tag="KLC54_001379"
     CDS             complement(1090..2187)
                     /locus_tag="KLC54_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HBD9177747.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFMIALFVGMKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLIFGGYFLTLAFKGILW"
     gene            2301..3182
                     /locus_tag="KLC54_001380"
     CDS             2301..3182
                     /locus_tag="KLC54_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HBD9177748.1"
                     /translation="MKIKDMEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFD
                     GILFERLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISE
                     HFLAPILFDFKAEFKNIEIHSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLE
                     INFWQDDELIVATSDKKLNEKEFYIDELLEQKWILREAGSGLRDKFLNEIGASSKKLN
                     IFLELDRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLKNIDLKRKFYTLKRK
                     NYNFNRALEKFEKIFKS"
     gene            3262..5130
                     /gene="rpoD"
                     /locus_tag="KLC54_001381"
     CDS             3262..5130
                     /gene="rpoD"
                     /locus_tag="KLC54_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HBD9177749.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTAKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(5145..5657)
                     /locus_tag="KLC54_001382"
     CDS             complement(5145..5657)
                     /locus_tag="KLC54_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HBD9177750.1"
                     /translation="MKKIYIIRHAKASKSGDIDDFERKLTKSGKEDLKKLFKNLALHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNKICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPGLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(5654..>6071)
                     /locus_tag="KLC54_001383"
     CDS             complement(5654..>6071)
                     /locus_tag="KLC54_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HBD9177751.1"
                     /translation="AYWQLLSSMFLHGNLTHLILNMIVLFQFGRILETYLGALRFIFI
                     YFIGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVLDKNSTKGLIVAI
                     LLMSFAPLLMGVNVAWYGHIFGFMCGYILAKIKEVK"
BASE COUNT         2486 a          948 c          822 g         1815 t
ORIGIN      
        1 aattttagat ttttatgatt tttctaaagc aaaaaatatt gccgatatag gaagtggcgc
       61 aggatttcca gctgtatttt tagctttttt actgcaaaac aattttcatc ttttcgaacc
      121 caatcccaaa aaagctgcct ttttgcggac actaaaaata gaatgcgaac tttcaaattt
      181 acatatttac aaagaaaaag ttcaagaata ccaaaatatc tttaaagccg atatcatcac
      241 ttcaagagcc ttaatggatg tcaagccttt gcttgaaatt tgcaaaaatc taaaagatga
      301 aaatacggtt tttattttat ggaaaggtag tgaaatttat caagaacttg aaaatataaa
      361 agattatgaa atttttgaaa ataatttaag aaaatattgt attttaaagt agccctaagg
      421 ctacttttta ttctgctaaa tcagcattaa aactgatatc cactaaaggc caagaaattc
      481 caccatgtcc tgcagccaca tcgcttaatg cttttaatgc tttagaacca tttttaaaag
      541 tatgcaaatc aagttgtcct ttagcttcaa atttattatc tttgatggta taagttaaag
      601 gcacaatagt acttttttta tccatagtaa tttttgctga aataacgcct ttattttcac
      661 ccgcaatcac atcttgaaaa acaactttaa tatccgtatc tcccaataaa gcagggaaaa
      721 atacttttgt gatattattg gttataatat cattgccttc acccataaaa gcattacttg
      781 gctttatggt agctttagcg cctttaagat aacttgccaa atcctttgta tttttagaaa
      841 atttatattc tacattttta aattcacctt ttgttcctat catatcttta gttttatatc
      901 cttcaaaaga aacctttaaa ctatcttctt taaaagatac agcacttaaa gccgaagcta
      961 acaagcaaga acttaaaaca cttacaagaa tttttttcat ctttattcct ttttaataaa
     1021 tttaattaat gaattaaatt atattcttag ttgattaata aaataaaatt ttctaaaaaa
     1081 taatttttat taccaaagta tacctttaaa agctaaggtt aaaaaatatc ctccaaaaat
     1141 caaaacaagc cctaaaacaa aagccaagcc aaatacccta gagccacttt ttaaaaattt
     1201 tttaaagtca atttgcaagc ctaaagctgc catagcaaaa acgatacata aggtacaaag
     1261 tgttttacct aaagaaataa tatcactcgt agcaatacct aaaatacttt ctttacttgc
     1321 tagataagta tttaaaacta tcatacctaa aaatgcaaaa gcaaaataag gtatagtgat
     1381 actttttgca gtttttccac tgcttgaatg ctgattttta gcgaaaaaat aagtcactat
     1441 aagcaaaaaa ggaacaagca aaatcactct catcattttt ataatcactg caacattaga
     1501 agcaccttgc tcaaatcctg ccatatcttt tgccatttca gcagcacctg caacatttgc
     1561 cacctcatgc aaagtagctc ccataaaaac ccccatagca ttttgatcaa aaaaaggaaa
     1621 aagatttaaa gaaaaagcta tgggatataa gaacataaac acaagtccaa aaatcaccac
     1681 cgtacctacg gctaaaattc ccttaaaagg atcacttttc aaacttgact ctagtgctaa
     1741 aaccgctgcc gcaccgcaaa tcgcacttcc ggctccaaca agcatagaag tttctttatc
     1801 gagtttaaaa attttcattc ctacaaataa agcaatcata aaaacaaaaa atatcactat
     1861 agcagaaagc aaaaaccctt tcaaccctac acttaaaagc tcagttaaag tgatattaaa
     1921 accatataaa acaataccga gtcttaaaag ctttttcgcg ctaaaatgca ctccagcttg
     1981 aaaatgatgt tggtatttaa aaaaccaagg agaaagcaac actcctatga tgatagcaaa
     2041 ggcagtcgct gctaaatggg tagtatcttt gatactttga acactagaaa gatacatagc
     2101 aaaaatcact atacaagcag taaaaagcaa acccttaaaa tttgatcgca ctatagccac
     2161 gctatgtgct aaaaaacttg ttttcattta ttttcctttt ttgtaaattt tgtgttatta
     2221 tatttttttt attaaaatta taaaaatata ttattttaat ttttataata aatttttttt
     2281 attaaataaa ggaatcactc atgaaaatca aagatatgga aatattttta gatcttttaa
     2341 acactcaaag tccaactcat acagccaaca atttttccat aactcaacct aatgtttcaa
     2401 tagtaattaa aaatttagaa aataaatttg atggtatttt atttgaaaga cttggaaaaa
     2461 aactcttacc tacaccaaaa gctttagaac taggaaaaaa ttggttaaaa attatacaag
     2521 cttactatca aagcttagaa aaattaaacg acgaaagtat gctcttaggg gaaataaaaa
     2581 tagcctcaac tcaaagcatt tctgaacatt ttttagctcc tattttattt gattttaagg
     2641 cagaatttaa aaacatagaa attcactctc aaacgcagaa ttcaaaagaa tgtttaaatt
     2701 tactaaaaaa cggaaatata gaatttgcaa tcattgaagc agaacttgat ccggctttag
     2761 tggagtatga aaatttagaa ataaattttt ggcaagatga tgaacttata gtagctacaa
     2821 gtgataaaaa actcaatgaa aaagaatttt atatcgatga acttttggaa caaaagtgga
     2881 ttttaagaga agcaggctca ggcttaaggg ataaattttt aaacgaaatt ggtgcaagct
     2941 caaaaaaact taatattttt cttgagcttg atagaatggc tgcgattaaa gaacttgttt
     3001 tacaaaaaaa agcaatctct attttttcca aaaaaagcat agaaaaagaa ttaaaaaatt
     3061 caacacttta tgaaattaaa ttaaaaaata tcgacctaaa gcgtaaattt tataccttaa
     3121 aaagaaaaaa ttataatttt aacagagctt tagaaaaatt tgaaaaaata ttcaaatcat
     3181 aagcataata accgatttat atagaaagtt aagcaatttt tagataaaat ccaaagctta
     3241 tataaatttc aaggataatc aatgaacgcc aaaactcaag aagctgaatt agaagaatta
     3301 tttcaagaaa atgcaaaaga ttatatcaca tatgaaaaat tggtaaaata tcttacaaaa
     3361 caaccaagtg catcaaccgc taaaaaagtg caagcattaa tgaaaaaaca caaagtacaa
     3421 cttttttcag cagccgaaat tgcacaaatg aaaaacatag aagatgcaaa aagacttcaa
     3481 gaagaaaaac aaaaactcca agatacaagc cttgagaacg aatttgattt agccaatgaa
     3541 aacgatttat tagaatggag cagatcagac tctcctgttc gtatgtattt aagagaaatg
     3601 ggacaaattg ctttattaaa caaagatgaa gaaattgaaa tttccaaaaa aatagaactt
     3661 ggcgaagata ttatcattga tgctttttgt tctgtgcctt atttgataga ttttatttta
     3721 gattataaag aacctttaat aaacagagaa agaagggtaa aagaactatt taaaagcttt
     3781 gacgatgaag aaaaaagtga tgataaactt gatgaacttg atatagatga agatgaagaa
     3841 aacgaaacag aattagaatc agatgaagaa aatactaaaa aaaacagcaa aaaagaagat
     3901 gaaagaactt taaaagttat agaaaaattt aaagctctag aaaaagctaa aaaagattgg
     3961 ttaaaaacat ccaaagacaa agaaagtgga gatgagcttt tagataaatt aagcattgcg
     4021 ttcaaaaaaa atattttaaa agaaaaatta atggatctag gccctacttc aaaacttatt
     4081 agtgaaatcg taaaatcaat ggaaactgca ctaaaaagcg atgaagaatt tgacaaagaa
     4141 cttaagcgtt tagaataccg cttacctatg ttttctgatg aacttaaaaa acgccatgca
     4201 gatattttaa aagatattac aaaattgagc aaagaagaaa tcacagagcg agctttagaa
     4261 acaaccatgg taagcactta tatggaaatt aaaaaactat ttcaaactaa agaagctagt
     4321 gaaaaaagct ttgatcttga aaaatcacgt ttaaaagaaa ttttagagca aattaaacgc
     4381 ggtaaaaaaa tctctgatga agcaaaagga agaatggcaa aatcaaactt gcgtcttgtt
     4441 gtaagcatag ctaaacgcta cacaaatcgt ggtctacctt tcttagatct tattcaagaa
     4501 ggaaatatag gtttaatgaa agctgtggat aagtttgaat acaaaagggg ttataaattt
     4561 tccacttatg caacttggtg gatcaggcaa gctatttcaa gggctatagc tgaccaagca
     4621 agaaccataa gaattccaat ccacatgata gaaaccatca atcaaattaa caaaattatc
     4681 cgcgaacatc tacaaaaaga tggaaaagaa cctgatgtca gtgttatagc taaagaagta
     4741 ggtttaagcg tagataaggt taaacaagtt attaaaatca caaaagaacc aatttctctt
     4801 gaagctccaa taggaaatga agatgatggt aaatttggag attttgttga agatagaaat
     4861 tcactttctc caatggatca tatcttaaag gatgatttaa aagaacaaat tgatgaagtt
     4921 ttagatcaat taaacgatag agaaaaagcg gtaattcgta tgcgttttgg tttaatggat
     4981 gatgaaagtg atagaacttt agaggaaatt ggaaaagagc ttaatgtcac tcgagaaaga
     5041 gtgagacaaa tagaaagttc agctataaaa aaactcaaac accctaaagt aggaagaaaa
     5101 ctaaaaaatt atattgaagg ttggaagtaa gagtcaatct cttgctaaaa acccaaatct
     5161 ttttcttctt ttaacttgcg cacatgttca aaaaaaacta attttccgct atgttttttt
     5221 aaatttttaa attccttaat atcaaattct aaacacaaga tagaagaagt tggaaaagaa
     5281 gctaaacata gcgagcttaa taactctcca agctccatta aaccaggatt atgacccact
     5341 aaaaatactt cgttaaactc atcatcaata tcttgcagaa tttttagcaa attttcaaca
     5401 ttacaaagat acaatctttc atcaaaacaa attttatttt tatcaaaatt ataaaatttg
     5461 gctatttttt tcgctgtttt agcggttcta acagcaggac ttgatagcac caaatcagga
     5521 tgaatttcat gtaaggcaag atttttaaaa agttttttta aatcttcctt tccactctta
     5581 gtaagttttc tttcaaaatc atcaatatcc ccactcttac ttgcttttgc atgtcttata
     5641 atataaattt ttttcatttt acctctttta ttttagctaa aatataacca cacataaacc
     5701 cgaaaatatg accataccaa gcaacattta cccccataag caatggcgca aaactcataa
     5761 gtaaaattgc cactataagt ccttttgtgc tatttttatc aagaacagca taaaagccca
     5821 ttaaaacaca aattgcacca ctagcgccta tgacatttat attttctccg aaatatttaa
     5881 aatcaaaata cacataaaaa acacttaaaa gtgaacacaa caatccgcca ataaaataaa
     5941 taaaaataaa acgcaaagca cctaaataag tttctaatat acgcccaaat tgaaacaaaa
     6001 ctatcatatt taatataaga tgagttaaat ttccatgtaa aaacattgaa cttaaaagtt
     6061 gccaataagc t
//
LOCUS       DAEDTT010000092         6026 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.092, whole genome shotgun sequence.
ACCESSION   DAEDTT010000092 DAEDTT010000000
VERSION     DAEDTT010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6026)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6026)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6026
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.092"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..916
                     /locus_tag="KLC54_001384"
     CDS             <1..916
                     /locus_tag="KLC54_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD9177752.1"
                     /translation="DRLLNQFQNYEKHLLLAYENFLKEIEILNHQILEQLKSISERIS
                     SEIFASVKEKDAYFYKESKGFLKKDLYTRYDYKAPYISSDDAFLAMFYNSDVMSKEFK
                     KIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSNIQKDHIFQSDKNFSELRAFCN
                     ASDEYFLKDFKELLFKSILELDLFFEKLNLKAFTNYENATKLSLAFFSRKINESRVLY
                     ELDSSEFVLFYPKKSEIYERVLNELNVYEFEALLINKPILTKIAKNFLEQSQNLIQEK
                     NKFLDLKKAELQKRRAQILNVRESIKED"
     gene            916..1620
                     /locus_tag="KLC54_001385"
     CDS             916..1620
                     /locus_tag="KLC54_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HBD9177753.1"
                     /translation="MRIFLALFLFFNSLFALSELEEGLKLYEANKFDKAYEIFKNLCE
                     KDISKACFSLAFMHESAKGVSKDLNQAYKFYDKACKLGLANACSNMALLLQNQGYKNE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGEACYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            1756..2484
                     /locus_tag="KLC54_001386"
     CDS             1756..2484
                     /locus_tag="KLC54_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HBD9177754.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKVRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFMEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMSLADMES"
     gene            2486..4207
                     /locus_tag="KLC54_001387"
     CDS             2486..4207
                     /locus_tag="KLC54_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HBD9177755.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNFIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFFDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVGGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            4496..4702
                     /locus_tag="KLC54_001388"
     CDS             4496..4702
                     /locus_tag="KLC54_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177756.1"
                     /translation="MLNILHANSSHRFHKCMPKEVHQIYDTLKLMEQQEDTKKVEAKK
                     EEQSNSTNTDKADNKKDKFLDMSV"
     gene            complement(4765..5469)
                     /locus_tag="KLC54_001389"
     CDS             complement(4765..5469)
                     /locus_tag="KLC54_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177757.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANATKMEFEA
                     RAEAMKLKAEEAKEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNFVART
                     YQQNSQNNDIKFNIAS"
     gene            5576..5938
                     /locus_tag="KLC54_001390"
     CDS             5576..5938
                     /locus_tag="KLC54_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HBD9177758.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIFTKEIYKEFSDCPLELQKELFE
                     KILLCEKAMIEFYKPEKINIASFANYVPRVHFHVMARFKEDAFFPECMWGKQQREAIK
                     LDLPKFEEFVKFLNSKIF"
BASE COUNT         2099 a          773 c         1102 g         2052 t
ORIGIN      
        1 tgatcgttta ttaaatcaat ttcaaaatta tgaaaagcat ttacttttag cgtatgaaaa
       61 ttttttaaaa gagattgaaa ttttaaatca tcagatttta gaacagctta aaagcattag
      121 cgaaagaatt tctagtgaaa tttttgcaag tgttaaggaa aaagatgctt atttttacaa
      181 agaaagcaaa ggatttttaa agaaagattt atatacaaga tatgattata aagcgcctta
      241 tatttcaagt gacgatgctt ttttggcgat gttttataat agtgatgtga tgagtaaaga
      301 gtttaaaaaa atcaaaaatg aactttataa atcttttgaa gaaattaaga tgaaattaaa
      361 agattttata aacatacttg aaagagaaat tttgcttttt aaagcagaat tttcaaacat
      421 acaaaaagat cacattttcc aaagtgataa aaattttagc gaattaaggg ctttttgcaa
      481 tgcaagcgat gagtactttt tgaaagattt taaggagctt ttatttaaaa gtattttaga
      541 gcttgattta ttttttgaaa aattaaatct taaagctttt acaaattatg aaaatgctac
      601 gaaactaagc cttgcatttt ttagtcgtaa aatcaatgaa agccgtgttc tttatgagct
      661 tgatagttct gaatttgtac ttttttatcc caaaaaaagt gaaatttatg aaagagtttt
      721 aaatgaatta aatgtttatg agtttgaagc tttgcttatt aataagccta ttttgacaaa
      781 aattgcaaaa aatttcttag aacaaagtca aaatttaatc caagaaaaaa ataaattttt
      841 agatcttaaa aaagcagaac ttcaaaaaag aagagcgcag attttaaatg ttagagaaag
      901 tataaaggaa gattaatgag aatattttta gctttatttt tattttttaa ttcattattt
      961 gcattaagtg aattagaaga gggtttaaaa ctttacgagg caaataaatt tgataaagct
     1021 tatgaaattt ttaagaatct ttgtgaaaaa gatatttcta aagcttgttt ttctttagct
     1081 tttatgcatg aaagtgctaa gggtgtgagt aaggatttaa atcaagctta taaattttat
     1141 gataaagctt gtaaattggg tttagcaaat gcgtgttcta atatggcttt gcttttgcaa
     1201 aatcaaggtt ataaaaatga agctcttttg gcttttaata aagcttgcac tttaggagaa
     1261 tcgttaagtt gtaataatat agctttattt tatgaaaaag aaaaagatgg acaaatggcc
     1321 tcaagttttt ataaaagatc ttgtgactta aaaaatgcaa gagcttgtta tcagttagga
     1381 tctttatatg ataaaggaga acttgttaaa gcaagtgtaa aatctgctct tgctttttat
     1441 tctaaatctt gcactttagg ttttggtgag gcttgttatt tgctaggacg ctataatcaa
     1501 ctagaaaaac aagatctaac aaaggcaaaa agatattttg gaatggcttg cgatcaaaaa
     1561 catcaagaag cttgcgcagc ttataaagaa cttaattcta aagatataga gctttattaa
     1621 aagttctatt ttcattactt tcaaagatat acttaaataa aattaagaat aacacaaaat
     1681 ttatcgcttt ttaaagttaa atttatatta ataggactaa tatagtcttg tttaaattat
     1741 tatcaaggag aagtaatgca agacaatatt attgatcgca gaagcttttt taaactaggg
     1801 cttctaggtg gttctgtagt agcagctagc actataggtg gcggtgctgt tttaaaggca
     1861 gcagaactta cgcattcgca tcaagcttca caagggaaat caaataaagt tagaggtaga
     1921 atgttttttc aaactcaaac tgaatttgat accttaagtg cagcctgtga aagaatttat
     1981 cctaaagatg agcaaggaga aggagctata ggtttaggcg tgccttattt tatcgataat
     2041 cagctagcta gtgcttatgg ttataatgat agagaatata tgcaagggcc tttcatggag
     2101 ggcaaagccg aacaaggcta tcaaactcct atgcaacgca aagatatttt tttagaaggt
     2161 gtgcatgctc ttgaagaaaa tgctcaaaag cgttataaaa aatctttttc tttgcttaaa
     2221 ggtggagatc aggataaaat tttaagcgat tttgaaaaag gaaaaattca aactacaggt
     2281 tttaaatctt cttatttttt cacactttta agagatatga cagtagctgg agttttagct
     2341 gatccaattt atggcggaaa tgataataaa aatggttgga gaatgatgca atatccaggt
     2401 gcacaaatga gctatgtgga taaaattgca agtgatgaat tttttaacat tgaacctatg
     2461 agtttagcag atatggagag ttaaaatggc tgaagtatta aaaaaagtag atgtggtaac
     2521 agttggagca ggatggactg gaggtatagt ggctgcagag cttactaaag caggtttgaa
     2581 tgtacttagt ttagaacgcg gacatatgca aagtactgaa aattttaatt ttatccatga
     2641 tgagtggaga tacgggatta attatggttt gatgcaagat tgctcaaaag acactgtgac
     2701 ttttcgccat gatcctagtg gtttagcctt gccttatcgt aaaatgggtt cgtttttatt
     2761 gggtaataat gttggcggtg caggggtgca ttggaatggt tggactttta ggtttatgcc
     2821 ttatgacttt gaaattcaaa ccctaagcaa acaaagatat ggtaataaat taggtaatga
     2881 ttataccttg caagattggg gcgtgactta taaggatatg gagccttatt atgatagatt
     2941 tgaaaaaacc tgcggggtat caggtgaacc aaatccttta gcggaaaaaa tgggagcttt
     3001 tagatccagt ccttatccac aagaacctct tgaaaatact aaaatgctta aacgatttga
     3061 aagtgcagca aaaagttcaa atttacacac ttatcgtttg ccagcttcaa attctaaagg
     3121 tggctataca aaccctgatg gtcaagattt agctccttgt caatactgtg cgtattgtga
     3181 gcgttttggt tgtgagtatg gcgcaaaagc aagtccttta aacacagtaa ttccaaaggc
     3241 tatgagcaca ggtaaataca ccatacgcac ttatagcaat gtaacgcaaa ttcttaaaaa
     3301 agacggaaaa gtaacggggg taaaattttt cgatactaga acgatgaaag agtatatcca
     3361 gcctgctgat atagttgtac ttacaagtta tatgtttaac aatgctaagc ttttaatggt
     3421 aagcaacata ggcgagcaat acgatccaaa aacaggtaaa ggaactttag gtagaaatta
     3481 ttgttaccaa atgaatatgg gcacaacagc tttctttgat gagcaattta acacctttat
     3541 gggttcaggt gctttaggaa ctacgagtga tgattttaac ggagataatt ttgatcattc
     3601 taaggaaaaa ttccttcatg gagctatgat ttatagcgtt cagcttggaa ctcgccctat
     3661 acaatcagcc ccacttccag caggagctcc aacttggggt gccgaattta aaaaagcatt
     3721 aaactataat ttcacaagag ctattacagt aggagggcaa ggtgcttctt tgcctcataa
     3781 gaataattat ttaagtcttg atccaactta taaagatgct tttggtatgc cacttttacg
     3841 cttaacttat aatttcaccg atcaagatag agctttgcat aaatttatca cagataaaac
     3901 agctgaggta gcaaaaagaa tgcaaggagt aaaatcaatc aaaaaaggtg cttatcttaa
     3961 ggattatagc gttgtgcctt atcaatctac tcataacaca ggtggaacaa ccatgggcgc
     4021 agatagagaa actagtgtgg ttaatactta tttacaacac tgggatgcgg ataatctttt
     4081 tgttgtagga gcaggaaatt tccaacacaa tagtggatat aatccaactg atactgtggg
     4141 agctttggct tatcgctgtg ctgaaggtat tttaaaatat cataaaagtg gaaaaagctt
     4201 agcttgataa taacttgaga gtttttgaaa actctcaaga ttataaattt ttaattttct
     4261 tccgatatag tatataatat caaggaaagc aaaaatgatt aatggtataa attcttattc
     4321 aaactacaat tatacaaaaa ggcaaatgta gtctgctctt ggagggtggt atgcaagatg
     4381 attactttaa gttcttttaa tagatatttt ggaaataatc ccctgcagac acttactaaa
     4441 attagagatg aaagtattga aaatgcaaaa atttaaatta taaaaaggat aaaaaatgtt
     4501 aaatatttta catgcaaatt caagtcatcg tttccataaa tgtatgccta aggaagttca
     4561 tcaaatatat gatactttaa agcttatgga acagcaagaa gatacaaaaa aagtagaagc
     4621 caaaaaagaa gagcaaagta attctacaaa tacagataaa gcagataata aaaaagataa
     4681 atttttagac atgtccgttt agctttaaaa aagctttatt tataaggaag attggcgtaa
     4741 attttttatt taaatctaag aattttaaga tgcgatattg aatttaatgt cgttattttg
     4801 cgagttttgt tgataagttc tagcgacaaa atttttaaag tctttatcaa aatttgaatt
     4861 tttatcgttg ttttttgaat ctttatctgt tttttctaag ctattttctg aatttttgtc
     4921 atctttttct ttattttctt cttctttttc tttggcttct tcggctttaa gtttcattgc
     4981 ttcagctctt gcttcaaatt ccatttttgt agcatttgct gcaactttat agtcttgtgg
     5041 gctaggatca gcaggagcca tagctgctgc tgcgatttgt cttgcattgg ctatagtttc
     5101 ttctggtgtg tttccttttt gcatgctgat aggaacttcg cccgctgtag catacatttg
     5161 attatcaggg cctcttgtgt aagtaaaact tgcagcacct gctaagccgc cgcccgctgc
     5221 ttgatgtgca gcttcatgag cttttacatt tctatcgata ctttggagtt cgcgaacttg
     5281 agctacttct ttttggctta gctctacgcc attaaccatt tgggtttgtt cgccattttt
     5341 ttctttatca tctttatttt cgctaagatt tttttcatct ttttgagtgg aatcagattg
     5401 atttgtttta tcaaaagaag gtttgctaga gtagtaatca taagagttat aacttgaact
     5461 aatttgcatt tatcctcctt tttgtttttt aaattttagg aattttaacg cattttgact
     5521 taaaaatttg ataaattttg taaaataatc ataaatacaa tttcaaagga atgtaatgat
     5581 ttatgaaaat gatttgattt atatagagaa agaggaggct caagtgcctt ggcttaaaat
     5641 ttttactaaa gaaatttata aagaatttag cgattgtcct ttagagttgc aaaaagaact
     5701 ttttgaaaaa attttacttt gtgaaaaggc tatgatagaa ttttacaaac ctgaaaaaat
     5761 caatatcgcc tcttttgcaa attatgtgcc aagggtgcat tttcatgtta tggcaagatt
     5821 taaagaagat gcgttttttc cagagtgtat gtggggaaaa cagcaaagag aagcaataaa
     5881 gcttgatttg cctaaatttg aagaatttgt aaaattttta aatagtaaaa ttttttaatt
     5941 tttattaatg atttgttatg ttttatctaa taaaattttt atattgaaaa ttactataaa
     6001 aaaggaaaaa aatgaaaaaa gtttta
//
LOCUS       DAEDTT010000093         5867 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.093, whole genome shotgun sequence.
ACCESSION   DAEDTT010000093 DAEDTT010000000
VERSION     DAEDTT010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5867
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.093"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..685)
                     /locus_tag="KLC54_001391"
     CDS             complement(<1..685)
                     /locus_tag="KLC54_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HBD9177759.1"
                     /translation="MENLNALILGIIEGLTEFLPVSSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAAGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVFILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLGFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLSNANSLIPLGIGFITAFV
                     VAVLVIKFFL"
     gene            complement(759..2756)
                     /locus_tag="KLC54_001392"
     CDS             complement(759..2756)
                     /locus_tag="KLC54_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HBD9177760.1"
                     /translation="MMYKKQNLPELTLRGLILGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRAMVVESKLAYPEGRAAAEILKVANKDQSNKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSAKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDTSSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILRRTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKFIVMQYLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            complement(2940..4286)
                     /locus_tag="KLC54_001393"
     CDS             complement(2940..4286)
                     /locus_tag="KLC54_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CitMHS family transporter"
                     /protein_id="HBD9177761.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LEQLGFGVGAALGVKGGVFDIKTLVAFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANVYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLGIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIIPSYICFM
                     IGLAIILPLNYPNLKTAKKVLDRASGGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            4531..4872
                     /locus_tag="KLC54_001394"
     CDS             4531..4872
                     /locus_tag="KLC54_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
                     /protein_id="HBD9177762.1"
                     /translation="MACGSSNPEDLAKNFTKDLYSGDAKSVMSYIDLSEAKSDEEKTF
                     VSGKITQVVAENAAKAKRMGGVKDIQIEEKTINEDSAKIRVLVLFNNDNNQSSNVFLA
                     KKDGKWLVLLK"
     gene            4856..5461
                     /locus_tag="KLC54_001395"
     CDS             4856..5461
                     /locus_tag="KLC54_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177763.1"
                     /translation="MFYLNKILYFVLILFLLIGIWGFFLNSNPSNQIIKKPHLPSLEI
                     GDLVFRAGIGSESFLIENLSQSPYSHIAMVVKTSPTMLIHVTTDDDKNAKNQVILSSM
                     DDFLKLSHKIAIKRLKFDEKTKQNIVTKALEHLGRKFIISTDKDAFYCTTFLEQSINS
                     ITPFHLQYTLIKAPFNEGLYLFPQTFFENNQSVLIYESQNF"
     gene            5525..>5867
                     /locus_tag="KLC54_001396"
     CDS             5525..>5867
                     /locus_tag="KLC54_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177764.1"
                     /translation="MKKSILFASALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGTPATPNTQAIPV
                     ARKIEIQCYKKA"
BASE COUNT         2293 a         1070 c          722 g         1782 t
ORIGIN      
        1 ttaagaaaaa ttttataact aaaaccgcaa caacaaaagc agtgataaaa cctatgccta
       61 aaggaattaa agaatttgca ttactcagta attcaggctc tttataaata ctataagctg
      121 tagcaataat catcgttgga atggcaagca aaaaactaaa ctcagcagcc acttttctat
      181 taaatcctaa caaaagccca ccaataatac ttgctccact ccttgaagtg ccaggaatca
      241 tggctaaaga ttgaaaaata cctatacaaa aagcttgttt aaagcttatt tcttctaagg
      301 aattgatacg atattgttta tttttgtgcg caagttctat aagaataaac acaacaccac
      361 caaaaatgag cattccaacc acaacccaac cattaaataa agcatttaag tattttgcca
      421 caaaaagccc tataactcca gtaggaaaaa atcccgctgc aagttttaac caaatatcaa
      481 gcccttgaaa caatttacgc caaaatacaa aaattaccgc caaaatagaa ccaagctgga
      541 tgataatcaa aaaacttttc caaaactcat ctatatcaat acctaaaata gtcgtaccta
      601 aaatcatatg tcctgttgaa gaaacaggta aaaactcagt cagaccttct ataattccaa
      661 gtattaaagc atttaaattt tccattttaa tccttgaatg ataattgcaa aagaaaaatt
      721 atatcagaat ggattaaatg gggttttaac cccaaaaatt aagcatcttt tttaacaata
      781 cgcttaataa aatataatac aactcccaca aaaaagataa gtgcgaaaag ctcgctatca
      841 tgaaaatttg ctaaatttaa agctaaagga ttttcactac cacccatact tactgaaaat
      901 acagtaattc ctgcgataat taccccaaaa atactttcac ccactataag ccctgaagca
      961 aaaagcgtgc ctctttgctc acaacttgca agtttttctt ctttatgaga attttttgca
     1021 tattttttag tcaagtattg cattacaata aattttaaaa ttccgcctat aactaaaggt
     1081 atatttacag caggcggaag gtaaatacct attccaacgg ctaaaggcgg caaagacatt
     1141 ttctgtgttc ttcttaaaat tttatctata ataatcatta aaattcctac aaatacacca
     1201 aaagccatat aaccccactc tatattgtga tgaaaaattc cttgagcgat agtactcatt
     1261 aaattcgctt gcggtgctgc taaagccgat gaagtatcca taccttctct tggcattgct
     1321 ccaacaaaac cataggcttg ataaagcaaa tttaaaacag gaactatagc caaagcacca
     1381 aaaacacagc ctacaagtaa agcaacttgt tgcttccaag gagtagctcc gactaaatgt
     1441 cctgtcttta aatcttgtaa attatcattc gaaatagcag ctgtagccaa aataacacta
     1501 gtagtaaaaa tagctaatgc tactgcaaat ttagaaagca taggatcttg aaaaagttcc
     1561 acacctaaaa ccaaaaaaac aatagaagaa ataataacac caataagtcc gattccagaa
     1621 ataggactag aagaagatcc tacaagtcct gccatatatc cgcaagctgc tgcaacaaaa
     1681 aaacctatta aaacagaaac taaagttcca acaaatgaaa atagcatttg ataataaata
     1741 cttaagttag catcttcaac aaaactataa aaagtaataa ataaacccac aaccattaaa
     1801 acaaaaagta taaaaatact ttttaaagaa aggtctatat ttgttctttc atttttttct
     1861 tgattagtaa ttttaacatt tttaacaatt tctttaatac cttcaataac gggttttaaa
     1921 agttctatta aagtccaaag cgctgctata gcaatagctc ctgttcctat aagccttact
     1981 ttagaactcc atacactaga agctaaatct acggcatttt ttgcactatc aaattcaaaa
     2041 tttgaaagat agggagtaaa aataccccaa gctaaaaaca tacctacaaa aagagctata
     2101 gcacctgcta aaccaactaa ataacctgct cctaaaagtg ccaaagaata tcccatagaa
     2161 aaaccaaaag ccattttatt ccaaataaaa gcaaaattac tctcacttgc agcgagttta
     2221 aaaccattgc ttaataaact aaaaatagca gctataaaag agcctaatgc tatttcttta
     2281 atgccttgtt ttcctttttt attactctga tctttattgg ctacttttaa aatttcagct
     2341 gcggctctac cctcaggata agcaagttta ctttcaacca ccatagccct tcttaatggt
     2401 atagtaaaaa gcactccaag tccaccacca caaagacata tcataaaagt ttgccaaagt
     2461 ggaaattcac tccaataccc acacataaaa agccctggga taacaaaaat aactgatgat
     2521 aaagttcctg ctgctgaagc ttgagtttga accatattat tttctaaaat atttgaagtc
     2581 ttaaaaagac tcaaaaccgc catggagatg accacagctg gaattgatga tgaaaaagta
     2641 agtcccactt ttaaccccaa atatacattt gaagctgtaa aaataatagt taaaatactt
     2701 cccaaaatca aaccccttaa ggtaagttct ggtaaatttt gttttttgta catcatttct
     2761 ccgttttaaa attttacttt caacttaaaa aatattctta taagtttaaa tttataattt
     2821 ttctctaaag taaaataaaa taatacaaaa aaacgcttat atttttataa atttttgact
     2881 caaaaatatc ataaaacaat gaaccaatca ttgaaaaatc aaaagttctt ttattttaat
     2941 tatattatcc cagctacctc agcaaaaatc aagcaaataa tacttatacc ccatatataa
     3001 aaaaagcttc ttttgatatg atctttaata ttaacctctg ctaaaccaca acctagcaaa
     3061 gttgcaggca caacaggaga aataaatgtc gcacaatttc ttgctatcac catgataata
     3121 gctatagtca aaggttcagc accaaaagcc ttagttacac tcaaaactat aggcatcact
     3181 ccataaaaat aagaatctgt acaaaaaata attgccattg gaacagccaa tatccctacc
     3241 atcaaaggaa tataagcgcc taaataatct ggaacaaaat ttaaaatcaa aacacccatt
     3301 ttctccataa taccactttt atcaaatacg cctattaata tcccagcacc aattaaagta
     3361 atatacataa gcattgcacc accacttgca cgatctaaaa cttttttagc tgtttttaaa
     3421 ttaggataat taagcggtaa aattattgca agtcctatca taaagcaaat ataactagga
     3481 ataatgccgc taattaaaag cccaataacc ccaatagcta caagtaaatt taaccaaaac
     3541 catttttcat tatggtgttc gcttttttct atatttaaat ttattccaga caagttacct
     3601 gcgcctgcac ctctttttat ttctatctta gcaatccaaa ttgccaaaag aagggataat
     3661 accaaaccta caatctgaat aggtataata tggtgccaaa gcaaatttgc atccattcct
     3721 atattagtag ccgctcttaa agtaggacca ccccaaggaa taacattcat aacccccata
     3781 gccgaagtaa taatcaataa cattgaagtc tttcttatac ctaaacgctc ataaataggt
     3841 aataatgcag gtattacaat aagaaaagta gaagcacctg aaccatctaa atgcacagca
     3901 gcagcaataa aaacagtaag aatgcaaact tgatatacat tagctttcat ttttgataaa
     3961 aatgcattta aaattttagt aaaaaaacca cttgcattta aaacactgaa aaagagtata
     4021 gaaaaaacaa acaaagctgc cgtatccgtt acgcttttga ctccatcttt aataaaagca
     4081 accaatgttt taatatcaaa aacacctcct ttaaccccta aagctgcacc cacgccaaaa
     4141 ccaagttgtt caagaataag taaaatacaa gctacactaa tacttacact tataaaagct
     4201 aatgctggag tagtataatc ttttagcaaa agccaaacta tcaatcctaa cgagaaaaaa
     4261 cctaataaag ctaaaaaaat ttccatatcc tatccttttg tatcattttt attcgataat
     4321 aaaataggat attttaagtc caacttatat gtgtttaaat ttatagcttt ttgaaaaaaa
     4381 tatattttct aatgtaacca ttttaaacaa gaataaaaaa ataattttga attattttgc
     4441 tataattatg aatattttaa tttatactat caaaggaaaa aaatgaaatt tttcaaactt
     4501 tctttcttgg ttttagttgc cttttttgta gtggcttgcg gttcttcaaa tcctgaagat
     4561 ttagctaaaa attttacaaa agatctttac agtggtgatg ctaaatctgt tatgagttac
     4621 attgatctta gcgaagctaa aagtgatgaa gaaaaaacat ttgttagtgg taaaatcact
     4681 caagttgttg ctgaaaatgc agccaaagca aaaagaatgg gtggtgttaa agatattcaa
     4741 attgaagaaa aaacaatcaa tgaagattct gctaaaatca gagttttagt gttatttaac
     4801 aatgataata atcaaagcag caatgttttt cttgctaaaa aagatggaaa atggcttgtt
     4861 ttacttaaat aaaattttat attttgtctt aattttattt ttattgattg gaatttgggg
     4921 tttctttcta aattccaatc cttcaaatca aatcatcaaa aaaccccatc taccttctct
     4981 tgaaataggc gatcttgtct ttcgtgcagg aataggaagt gaaagttttt taatagaaaa
     5041 tttaagtcaa agcccttatt ctcatatcgc tatggtagtt aaaacttctc caactatgct
     5101 catacatgtt acaacagatg atgacaaaaa cgctaaaaac caagttatct taagctctat
     5161 ggatgatttt ttaaaactga gtcataaaat tgctattaaa agattaaaat ttgatgaaaa
     5221 aaccaaacaa aatatagtta ctaaagcttt ggaacattta ggcagaaaat ttatcataag
     5281 tacagataaa gatgcttttt actgcactac ttttttagaa caatctatta actccattac
     5341 cccatttcat cttcaataca ctctaatcaa agctcctttt aatgaaggtt tatatctttt
     5401 tccacaaact ttttttgaaa ataatcaaag cgtattaatt tatgaaagtc aaaattttta
     5461 atttcacatt cacttcactt aaaaatttta taatgtcatc actttacatt aaggagaaat
     5521 aattatgaaa aaaagtattt tattcgcatc agcactttta gctagctcaa tgctttttgc
     5581 agatagtcta aaacttgaag gtactattgc acaaatttat gataacaata aaaccttgct
     5641 tattgactct atttatggcg gacaaatggc tataaaagtt ctaccaaata ccgaaataga
     5701 aatggatgat tgtggtattt ttggaacaga taaagatgga acttttaaag atttacaggt
     5761 tggaaatttt ttagaaagta aaatttctta tggaacacct gctacaccaa atactcaggc
     5821 tattccagta gctagaaaaa ttgaaattca atgttataaa aaagctt
//
LOCUS       DAEDTT010000094         5842 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.094, whole genome shotgun sequence.
ACCESSION   DAEDTT010000094 DAEDTT010000000
VERSION     DAEDTT010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5842
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.094"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(18..932)
                     /locus_tag="KLC54_001397"
     CDS             complement(18..932)
                     /locus_tag="KLC54_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HBD9177765.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDVFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLVAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPNGELAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     SEFIIFLNNKDFIISGFGDSIMFRSIDE"
     gene            complement(937..1461)
                     /locus_tag="KLC54_001398"
     CDS             complement(937..1461)
                     /locus_tag="KLC54_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HBD9177766.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVGNSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(1458..2240)
                     /gene="napH"
                     /locus_tag="KLC54_001399"
     CDS             complement(1458..2240)
                     /gene="napH"
                     /locus_tag="KLC54_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HBD9177767.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRFFNTIPLS
                     DPFAVLQIILASWSIDLMALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(2237..2977)
                     /gene="napG"
                     /locus_tag="KLC54_001400"
     CDS             complement(2237..2977)
                     /gene="napG"
                     /locus_tag="KLC54_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HBD9177768.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLALKADDNYALRPPGAED
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFDAKKATNYLNDGEL"
     gene            complement(2995..5769)
                     /gene="napA"
                     /locus_tag="KLC54_001401"
     CDS             complement(2995..5769)
                     /gene="napA"
                     /locus_tag="KLC54_001401"
                     /EC_number="1.7.99.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HBD9177769.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKIVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEAMDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFEEFKKGLAPYTLEYTAKVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFAGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
BASE COUNT         1936 a         1197 c          747 g         1962 t
ORIGIN      
        1 tcagaacact agaaagatta ttcatcaata ctcctaaaca ttatactatc accaaagcct
       61 gaaatgataa aatctttatt gtttaaaaaa ataataaact cactcatcaa attttcatta
      121 ttaaaagttt taacaggctt aaaatcactt gtactaaaaa cttcactaac tccagcttca
      181 ttatcgctat aaacagccaa ttctccatta ggacttaaag cgcaagtata tatcaaaaaa
      241 tctttttgta aaaaattttg ctcttcattt tttacaactc ctatacgcct atccgttcca
      301 caacttaaaa taacattatt tttaaaatct acttgataga tattatcttt atgcatttta
      361 tcatagtttt ttaacatctt ccaatttttc aaatcaaaaa gttctacttc gccactctca
      421 aaacctgcaa ctagtctact cttatcttca tttaaaactg catcattaag actagaatgg
      481 gaaaaattaa atttttttat attttttaaa cttttatcaa tcaattctat ttcagaacca
      541 atagaaatca aaagataagt attttcattg ataaaaaatg cttttattat gctattttct
      601 tcgagctttt tgatttgtaa attttcctta taaaaactta aatttttagc accaaaatca
      661 ccctcgctaa gtattaaaag tgtatgttta aaaacatcaa tgttgtaaat tttagcaaaa
      721 tcatcaccat aataattttt aatctttggc aaagataaaa gttcttttaa acttttatct
      781 ttaatgttat attgtaaaat ttcaccttta tcagtgccta tatataagtt ttgcttatca
      841 agctttaaag ctgttatatt ggcatttaat ttcagctcat aagcataaga caaaacacaa
      901 aaaagactca aaataaaaag aaattttttc atttatttac tttacaccct cattaatcac
      961 atcaattaaa tttgaacgac tttttaattg ttcattttta aattcaggtt taaagctatt
     1021 tcccactaaa ggttttgcat cgctttgtgg aacatgacac tgagtacaat taaaacgact
     1081 atcgctaatc atatctcctg tggttttatt gtgtctaaaa tcataataat gactagcagg
     1141 aagtggagtt gcaccagcat ctgctgctat agccttatca tggcagctta agcacatatt
     1201 gttatcttta gttataggta acaaatcttc aatagcatgc ggaattaatg gtggtgcatt
     1261 ttcataagaa cgctcaaaac gagtagattc cccaggttgt aaagttgtga aatttgcttc
     1321 cactaaattt actttatttt cattttctaa acttgctttt ctaagtccaa tttgttccga
     1381 acttacccca ctattcattg cacaagcggc aaaaaatacc actgcagcac ttcctaataa
     1441 aaccaatttc ttcttcatca tttattcctt aaatcaaaaa tattaaaatt caaagcatca
     1501 tcattacaaa cttctataca tcttgcacac cttatacact ctcctgattt cacgctagta
     1561 ctttcttttc caaccatcca caaaacctgt ttttcaggac aaatacggat acattcataa
     1621 catttagtgc atttatcact atcatgcttt attttaagca aagcaaaacg agaaataaaa
     1681 gcataaaaag ctcctagtgg acaaaaatgt gaacaaattg ccctagggct taaaaaagta
     1741 tcgatacaaa aaagtataaa ggctacaaaa atccaagaac ttgtagcaaa aataatccct
     1801 ctatgtatca ttcctatata agaaaaactt tcaaacacag gcaatgaaaa tacaaaagaa
     1861 aggactaaaa ccaagaccaa cacaaaatag cgtaaatttt taggtaaaat taaaaattta
     1921 ttattaaggg ttaatttatt tcgcacaaaa gcagcaaaat ctgtgattaa attaacagga
     1981 caaacccaag agcaaaaaac ccttcctaaa agcaaaccat agataaaaaa tataatcaaa
     2041 gctcctatta aagccattaa atctatactc cagcttgcta aaatgatttg caaaaccgca
     2101 aaaggatcgc ttaaaggtat ggtattaaaa aatctagaag aacttaaatt tccctgcagg
     2161 ataaaatctg tagctttaaa actaaaaagc gctaaaattc caagctgaac gatgcgtcta
     2221 gcaattaaat acttcatcac agttctccat catttaaata attggttgct tttttagcat
     2281 caaaatgttt tgaagtatct gcatttttta tacgtccttc atctttttca tcccagcctt
     2341 ttacataatg agatcctgct tttcccaata catactccct tggcaaaaca cgaatggctg
     2401 gtttttcagt aatacaagca agttcacaaa gcccacaacc tacacacact tcatgatcca
     2461 cactaggtag taaaaaagcg tgcttggcgg tgcgttcatt gcgtttaagc tcaagtttta
     2521 aagccctatc tatcaaagga caagctctat aacaagcatc acattgaatt ccccagtgtg
     2581 ccacacaaga agcactatca acaatagcaa tacccatttt caaagattct ataccctgtt
     2641 ctaaatgctt tttatctaaa gcatcagttg gacattctct aatgcaagga atatccttac
     2701 aaagataaca aggaatttct cttgccttaa aaaaaggtgt accatttttt ggactatcta
     2761 acaagctagc aagctttaaa gtatcataag gacaggcttt tacacaaagc ccacaacgaa
     2821 tacatttgct taaaaatcta gcttcatctt cagccccagg aggacgcaag gcataattat
     2881 catcggcttt taaagccaaa ttagccaaaa atccacctcc tgtacataaa catgcagcct
     2941 taaaggcact aacgaaaaat tctcttctac ctttcattta atcaaaaccc taaatcaagc
     3001 cttataaatt tttacagcac attttttaaa gtcagtttgt tttgaaagcg gacaagtcgc
     3061 atccaaagta actttattga tatatacatt ctcatcaaac cacggcacat atacaagtcc
     3121 tacaggcggt ttgtttcttc cacgcatatc tactcttgct tttactttac cacgacgaga
     3181 ttccacccaa actaaatcac cttgatttaa gcctaatttc tctccatctt tctcactcat
     3241 atagcaaagt gcttcaggca cagcacggta aagctcaggc acacgcatag tcatagttcc
     3301 actatgccaa tgctctaaaa cccttcctgt tgcaagccag aatggatact ctttacttgg
     3361 tctttcaggt gctttcataa atggcctaaa gaaaatttta gccttatttt taatactgtg
     3421 ctctttttca tctttaggag ctattaaatc cccatttgta agcattttgt taaaatcacc
     3481 ataaaaagca aaatctgaat ttggagccgc ttttttagca taataatcaa atttagtatt
     3541 aaatctccat tgtgtttcct tgccattaac cacaggccat cttaaacccc ttactttatg
     3601 ataggtatcg aaatccgcta aatcatgtcc gtgtcctaag ccaaatttac gatattcttc
     3661 ccaaaggtat ttttgaacga aaaagccata acctgcaaat tcttttccat cactgccttg
     3721 aatttttctc tcatcacctt taacatcagt attatcaaag ccttttgcga tagcatcgtt
     3781 tggattaaag ctttttgctt ctttattggc aaatagtaca tcaaaaagtg tatcatcttc
     3841 gctataaccc atagcttttg cctcttctaa aacacttggc aaggtaagct tattatccac
     3901 tttttgctct ttccaaactt ctttaagctt aaagcgtttt gcaaattcta aaatttgcca
     3961 agtatcactc atggcagcac ctacaggtaa aacttgttgt ttccaatgtt gagttcttct
     4021 ttcagcatta ccataagcac cccatttttc ataaatcata gcacttggta aaataagatc
     4081 agctactttt gctgaaattc caggataaca atcacttaca acaataaaat tatccatttc
     4141 tcttgctgct gcgatccagt gatttgcatt tgcagtgttt tgccatggat tattcacttg
     4201 cacccatgca aatttaattt ttccatcttc taaatctctc atgatattaa gataaggaga
     4261 gcctggtttt gggttgatgg tctttgcagg aactttccaa attttttcag aaatttctct
     4321 gtgttttgga ttggctacaa ccatatctgc aggcaaacga tgcgagaaag ttcctacttc
     4381 tctagctgtt ccacaggcac ttggctgtcc tgttaaagaa aaggctccac tacctggttt
     4441 agcttgcttt cctagtaaaa aatgcaccat ataagcttgt tcatttaccc aagaacctct
     4501 tgtgtgttga ttaaagccca tagtccaaaa acttacgact ttgcgatttt tttctatgta
     4561 aagattagct aattcttgaa gttttttctt aaaatcttcc aaagattcat tatcatcgcc
     4621 tttggctact tttgcagtgt attccaaagt ataaggggct aaaccttttt taaattcttc
     4681 aaaagaaatt tcccagtttt tatcagccac accttgatgt ttcatttcaa atttatcacc
     4741 cgctttaacg ccaagataag ataaagaagt agcctcttca tcgtctaaag tgattacatt
     4801 ttctttttca actgtatctt tttcactttc tttaaatttt ggatgatttg gattatttct
     4861 cataccataa ccaatatcag cataaccagt tgcaaatacg cagtgatctt tgataaattt
     4921 catatccata gcctctggat gattataaac aatctctctt gctatgtagt tccaaatagc
     4981 caaatctgta tttggtttaa aaataatttc aatatcagca atatttgaag tacggttaga
     5041 aaaagtgctt agattaacaa ttttgacttt atcaagatta cttagttttc tatcacttac
     5101 tcttgaccaa aggattgggt gcatttcagc catattagct ccccaagtga tgatagtatc
     5161 tgtaagttct atatcatcat aacagcctga tggttcatct acaccaaaag tttgcataaa
     5221 accaaccact gcagaggcca tacaatgtct tgcatttgga tcgatattat ttgttctaaa
     5281 gcccgctttt gcaagtttta aagcagcata accttcttgg atggtgtatt gcccactacc
     5341 aaaaatccct atacctgtaa cgccgagttc attgtaggct tttttaaatt gtttttccat
     5401 ttcatcaaag gctctttgcc aagaaacttg ttgaaatttg ccttttttat caaattcgcc
     5461 tttttcattc atgcgaagta aaggcataac aagacgatct tcaccataca tgatcttagc
     5521 attaaaataa cctttgatac aattaagtcc gcgatttacg ggtgctgcag gatcaccttt
     5581 tgttgctacg attttgccat cttttctggc tatcataatt ccacagccag ttccacaaaa
     5641 tctacaaaca gctttatccc atttccaatc ttcttcttgt gcaccaagca tagagcttgg
     5701 aacactaagt cctgcaacac tagcagcact tgcaatagcg gtatttttaa taaaatccct
     5761 tctattcatc cttattcctc caaaataaaa aaatcatctt attataaaaa atggagtata
     5821 aaaatctctt gaaattttaa ta
//
LOCUS       DAEDTT010000095         5785 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.095, whole genome shotgun sequence.
ACCESSION   DAEDTT010000095 DAEDTT010000000
VERSION     DAEDTT010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5785)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5785)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5785
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.095"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(87..2261)
                     /gene="flhA"
                     /locus_tag="KLC54_001402"
     CDS             complement(87..2261)
                     /gene="flhA"
                     /locus_tag="KLC54_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HBD9177770.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAAASQSGAGGTTAAPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKIKNDYPIIVEGALGVAPVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            complement(2248..2658)
                     /locus_tag="KLC54_001403"
     CDS             complement(2248..2658)
                     /locus_tag="KLC54_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HBD9177771.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
     gene            2833..3105
                     /gene="rpsO"
                     /locus_tag="KLC54_001404"
     CDS             2833..3105
                     /gene="rpsO"
                     /locus_tag="KLC54_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HBD9177772.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            complement(3187..>5785)
                     /locus_tag="KLC54_001405"
     CDS             complement(3187..>5785)
                     /locus_tag="KLC54_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HBD9177773.1"
                     /translation="FFSIILGHTGSGIFALLLLLFSLILLFPKFAKEILKIELDFTYL
                     LKVEQAFKSLLMRVFGGENEKEDIGKSEPMVPKLNILQDNIYENSQINEKEKTNNLEQ
                     IIKDSNINASKNSITTAKENFEKLKNQILDETIEIDKQSLKESRSFVYEHSQQVRNFA
                     QKASKMSISLDEDFNFISEEEVDMIPERFLKPKKLEDIKQIDTNKNLDEPSYKRKNIE
                     IPVSKQEVKPKIFTKELELRENLIKKEKLEQEYKAYQNEILENKVKQEIKKLEEYDAI
                     NSSDIIEGNKYSFNSPKTIKTETEESNKINENKNPDKTDNIFEFAPIVEELNHPYIEP
                     TPIKNINEIVIEEKNTLDFIQNTETKIDDKKTNDQEIKLQKAVLAKEIAINQALLREI
                     EQGEVEKPKDFTLPPLDFLANPKEHRQEINESEIDKKIYNLLEKLRRFKIGGDVISTY
                     VGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAKSIRIQAPIPGKDVVGIEVPNDEI
                     QTIYLREILQSEVFKNAKSPLTIALGKDIVGNAFVTDLKKLPHLLIAGTTGSGKSVGI
                     NSMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIPHLLTPVITDPKKAVNALSNMVAE
                     MERRYRLMADAKTKNIENYNEKMKELGEEELPFIVVIIDELADLMMTAGKDVEFYIGR
                     LAQMARASGIHLIVATQRPSVDVVTGLIKANLPSRISYKVGQKIDSKVILDAMGAESL
                     LGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDFLKDQQSVEYDESFLKDQQSAGVT
                     TNESFDGEVDELYEEAKRVILEDGKTSISYLQRRLKIGYNRSANIIEQLTQNGVLSEP
                     DAKGQREIL"
BASE COUNT         1848 a         1000 c          790 g         2147 t
ORIGIN      
        1 atttttaaaa taaaaattta ctataaattg acaagcataa ccatcaagat ctgtatgcga
       61 aagatgataa attttcatta tattccttaa agttctatcc taataatacc ctcggtatta
      121 aaatttgtat tttctgcaat ttctgcaaaa cttaacacta ctatattaat gctaaaatta
      181 taacaaatat cagcaatgaa ttttctaagc tgcggttcaa cgcaaagtat aaaaggcttg
      241 atacgaccat ttgctaccgc ggcaacttca gcccttagag tatctactaa agtgcctgtt
      301 tgagctacac ttaaaggcaa gtgataactt ccatctctaa attgtacatt ttccattaaa
      361 actgcagagc tagcagagtc taagataaaa atatccaaat ttcctttatc atctaaatac
      421 atatttgtaa tcatcctagc taaagacgct cttacatgtt caataatcat atcaaaactc
      481 ttgcttactt ctgctatatc gcttacagat tctaaaatag taagcatatc tttaattggt
      541 atgtgatgct taagcaagtc tttgagaatt ttttgaataa gacttacagg tgcaacacct
      601 aaagcacctt ctacgatgat tggataatca tttttaatct tatcaagaag attttgcacc
      661 tcttggcgtg taagaagttc gcttgcatgt gctttgataa gttcgctcat atgtgttgaa
      721 ataacacttg caggatctat tactatatag ccatttaatg ttgcttcatc ttttaaattc
      781 gcatcaatcc aaagtgcatc agagttaaaa gcgggttctt ttgtagcaat cccttctatc
      841 tcttctgtga taaaaccact atccatggct aaatatttat ccggataaat ttcggcactt
      901 gctatagaca cgcccttgag tttaaaacta tactcatttg gtttaagtct taaattatct
      961 cttattctta tttttggcat taaaaatcct aaactttcag caatacttct tctcattgag
     1021 cgaatccttt ctgtaagttc gttttcagca agcttaataa gtccgtatcc aagttcaagt
     1081 tctaaaattt caactttgag tatgtcgtta atcttgtgtt cttcttcttt gagaatttct
     1141 tcttcgcttt tcttagcagg cgctgccgtt gtcccacctg ctccactttg agatgcagct
     1201 gcagcacttg gtttgctttt tttaactgta gttatatcaa ttttaccttc cttaacctgc
     1261 ttggtaagat agccaagact taaaaaaact aaagccataa agcccaagga taaagttggt
     1321 aagccaggta ctaacgcaaa gataaaaagt acaaaaccta ctattaaaag cgtgcgatat
     1381 tcgcttaaaa gttgagttaa agttccttct gcaaaatttt cctcatcttt gcttgcacga
     1441 gtgataatta tagcggttgc agtagaagta ataagccctg gaatttgcga tacaagtcca
     1501 tcacctatgg ttaaaatagt ataagtagaa gcagcatcgc ttaaagccat atcgtgctga
     1561 aaagatccta ttaaaaaacc acctatgata tttataatag ttatgataat tcctgcaaca
     1621 gcatctcctt tgataaattt agaagaacca tccattgcgc catagaagtt tgcttcagca
     1681 ataacttctt gacgtcttgc tctagcggtt tgttcatcaa taagccctgc atttaaatcc
     1741 gcatcaatag ccatttgttt acctggcatc gcatcaagtg tgaatcttgc ttgtacttca
     1801 gaaacccttg tactaccttt tgttacaacc atgaaattaa tcaatactaa gatacaaaat
     1861 acaatcacac caatgaccat atttccacca acaacaaatt ctccaaatgc tgctataatc
     1921 tcactcacgg cttcagggcc gttttgccct tcgcttaaaa tcatccttgt agtagctata
     1981 tttaatgaaa gtctaaataa agtaataatc aagattaaag ttggaaaagt tgttaaatct
     2041 gtcggtttgg gtatataaat agaaattaaa ataattaata ccgataaagc tatgcttaaa
     2101 gctaagaaaa agtccaaaat aggacttggt aaaggaacta taataatagc taaaatacaa
     2161 actaaaaaac caacaatagt taagctttta gcttttaaaa caggagcaat taaaggcccc
     2221 aagaaaggaa aaactaaatc gactatttta ttttttgcca ttatttttca taatatcttc
     2281 taaagtaata gaatctaaaa attcatctac tttattttgt aaatttacta acataggcat
     2341 taaggtgcaa ttttcttctt tattatttgg acaagtgcca ccactgcatt caaatacact
     2401 gatatccttt ttttcggcac tattaacaat ttcttttata gtatattgac ttggttcttt
     2461 gattaaaaca aaaccacctt ttgccccttt aaaggatttt aacaagccat ctttagctaa
     2521 agtttgtaaa attttagcta aaaaactttt aggaatatca agctctaaag ctaaagaatc
     2581 tacatcttga ggtgtttctt tttgagaaat ataaattaaa gaaagtaaag cgtattcgct
     2641 agctttggta aatagcacag attctcctta ttataactac agaaatagct gtaattataa
     2701 taaataattc ttagaaaaag acttaaattt tgacaaaacc ttctaaaaaa gataaattca
     2761 gtttattttt tgctttttaa ggtaaaatta tagttcttta attttattat tttaccaatc
     2821 aggaggtcta tcatggcttt ggattcggcc aaaaaagcag aaatagttgc gaaattcgct
     2881 aaaaaaccag gtgatactgg ttcaacagaa gttcaagtgg ctcttttaac tgcaagaatt
     2941 gcagaactta cagaacattt aaaaatctac aaaaaagact tttcatcaag attaggactt
     3001 ttaaaacttg taggtcaaag aaaaagactt ttatcttatc ttaaaagaaa agattataat
     3061 tcttatagta agttaattac cgaattaaat cttagagata aataatttta agcccttttt
     3121 actgggcttt tatctttata aattcttctt tatgtaatta gtttttatat caaaataaaa
     3181 aaaatcttat aaaatttccc tttgtccttt ggcatcaggt tcgcttaaaa ctccattttg
     3241 agtaagttgt tcaataatat ttgcagagcg gttatagccg atttttaaac ggcgttgcaa
     3301 ataagaaatg cttgtttttc catcttctaa gattactctt ttagcttctt cataaagctc
     3361 atctacttcc ccatcaaagc tttcatttgt tgtaacaccc gcgctttgct gatcttttaa
     3421 gaagctttca tcatattcta cgctttgttg atcttttaga aaatccacga ttttttctat
     3481 ttcaaattca ctcgcaaaag gtgcatgcaa acgcactata gaacttgttc caggaggagt
     3541 aaataaacaa tctcctcttc caagtaaact ctcagcaccc atagcatcta agataacctt
     3601 agagtcaatt ttttgcccta ctttataaga aattctactt ggcaaattcg ctttaattag
     3661 tcctgttaca acatcaacag aaggccgttg tgtggctaca atcaagtgaa ttccacttgc
     3721 tcttgccatt tgagcaagtc ttcctatata aaattctaca tctttacccg cagtcatcat
     3781 taaatcagca agttcatcga taattactac aataaaagga agttcttctt cacctaattc
     3841 tttcattttt tcattgtaat tttctatatt tttggttttt gcatcagcca ttaaacgata
     3901 gcgtctttcc atttcggcta ccatatttga aagtgcattg actgcttttt ttggatctgt
     3961 gataacagga gttaaaagat gaggaatgtc attataaatg ctaaattcaa gcatcttagg
     4021 atctatcatc atcaaacgca aggttttagg agagttgcga tataaaagac ttaaaagcat
     4081 agaatttatc cccacacttt taccactacc tgtagttcct gcaataagca aatgcggaag
     4141 ttttttaaga tcggttacaa aagcattacc tactatatct ttacctaaag ctatggttaa
     4201 agggctttta gcatttttaa aaacttcact ttgtaaaatt tcccttagat aaatggtttg
     4261 aatttcatca tttggaactt ctatgcctac aacatctttt cctggtattg gagcttgaat
     4321 acggattgat tttgccatta aagccatagt taaatcatct tgtaaattta aaatacgact
     4381 tacttttaca tctgcactag gacgaaattc aaaagtagtt acaacaggac caacataagt
     4441 gcttataaca tcaccgccta ttttaaaacg acgcaacttt tcaagaagat tataaatttt
     4501 tttatctatt tcactttcat tgatttcttg tctatgttct tttggattag ctaaaaaatc
     4561 taatggcggc aaggtgaaat cttttggttt ttctacttcg ccctgctcta tttcacgcaa
     4621 taaagcttgg ttaatagcaa tttctttggc taaaactgct ttttgaagtt taatttcttg
     4681 atcatttgtt tttttatcat caattttagt ttctgtattt tggataaaat cgagtgtatt
     4741 tttttcttct ataactattt catttatatt ttttatagga gtaggttcta tataaggatg
     4801 atttaactct tctacaatgg gagcaaattc aaagatattg tctgttttat ctggattttt
     4861 attttcattt attttgtttg attcttctgt ttctgtttta attgtttttg ggctattaaa
     4921 actatattta ttcccttcta taatatcgct tgaatttatc gcatcatatt cttctaattt
     4981 tttaatttct tgttttactt tattttctaa aatttcattt tgataggctt tgtattcttg
     5041 ttctagtttt tcttttttta tcaaattctc tctaagttca agctcttttg taaaaatttt
     5101 tggtttaact tcttgtttag aaactggaat ttcaatattt ttacgcttat aacttggctc
     5161 atctaaattt ttatttgtat ctatttgctt tatatcttca agttttttag gttttaaaaa
     5221 acgttcagga atcatatcta cctcttcttc tgaaataaaa ttaaaatctt catcaagact
     5281 aatgctcatt ttactagctt tttgtgcgaa atttcgcact tgttgagaat gctcataaac
     5341 aaaacttctc gattctttta agctttgttt atcaatctct atggtttcat ctaaaatttg
     5401 attttttagt ttttcaaagt tttccttagc tgtggtaatt gaatttttac ttgcgttgat
     5461 attgctatct ttaattatct gttctaagtt attggttttt tctttttcat ttatttgtga
     5521 attttcgtat atattatctt gtaaaatatt taattttggc accataggtt ctgatttgcc
     5581 tatatcttct ttctcgtttt ctccaccaaa tacacgcata agtaaagatt taaaagcttg
     5641 ctctactttt aataaataag taaaatctaa ttctattttt aaaatttctt ttgcaaattt
     5701 tggaaacaat aagatcaaag aaaatagtaa aagcaaaaga gcgaaaattc cactccctgt
     5761 atgccctaag attatagaaa aaaat
//
LOCUS       DAEDTT010000096         5661 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.096, whole genome shotgun sequence.
ACCESSION   DAEDTT010000096 DAEDTT010000000
VERSION     DAEDTT010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5661
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.096"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1106
                     /locus_tag="KLC54_001406"
     CDS             <1..1106
                     /locus_tag="KLC54_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177774.1"
                     /translation="LNLIENNAIQNSLKDIAEFNSVYNGNGNDEEMSVKDMIKDIKIG
                     QKDIDEIYWKIFDIETDGENKSSALIEIEKAKECANKMKNDYMKFYDQEDSQGNVTEG
                     IISKLKQACDDIEENKDKIEKFEKFYNEIFIGVEADENGKGGKLSLEKYLNEKRTEIN
                     NLISSKKQELENCLNDYKDKFENLYKEKNDEIDELLPGATSAGLAEAYKDEREVAQTN
                     IKTWNIIFGVSIFVFIIVFGIYFCFSFEENFTYINFLRALPFLFFSGFFTYYSTKQIA
                     EYKRIASEYAYKQRLNQTYKGYETQIKETENEELKNQLLKIMLDSAENNPSKILDKKG
                     EIPSLSLIEKMLDILPFNTLKRLQDKIKAKIEK"
     gene            complement(1189..1890)
                     /locus_tag="KLC54_001407"
     CDS             complement(1189..1890)
                     /locus_tag="KLC54_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HBD9177775.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLEKQGIKEDEISYNSPNIID
                     RLSDPYSNDTQATYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDNYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(1887..3089)
                     /locus_tag="KLC54_001408"
     CDS             complement(1887..3089)
                     /locus_tag="KLC54_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HBD9177776.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGANALGFVICANINVRL
                     VLKYESEKILAKALMIMFISTVILLVNAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKEKK"
     gene            3192..4541
                     /locus_tag="KLC54_001409"
     CDS             3192..4541
                     /locus_tag="KLC54_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HBD9177777.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDIGTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYTKALNDLKAQKIEQEKLISEQVSQKLLLEKQKFEQELLTQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQENKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCQHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            complement(4565..5608)
                     /locus_tag="KLC54_001410"
     CDS             complement(4565..5608)
                     /locus_tag="KLC54_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HBD9177778.1"
                     /translation="MKKHILLLGLCLSLSLSAKSVSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNVLNNYPRLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
BASE COUNT         2118 a          864 c          942 g         1737 t
ORIGIN      
        1 ttcttaatct aatcgaaaat aatgctatac aaaattcatt aaaagatatt gcagaattta
       61 attctgttta taatggaaat ggcaatgatg aagaaatgtc cgtaaaagat atgattaaag
      121 atataaaaat cggacaaaaa gatatagatg aaatttattg gaaaattttt gatattgaaa
      181 ccgatggtga aaataaaagc agtgctttaa ttgaaattga aaaagctaaa gaatgtgcaa
      241 ataaaatgaa aaatgattat atgaaatttt atgatcagga agattctcaa ggcaatgtta
      301 ccgaagggat tatttcgaag ttgaaacaag cttgtgatga tatcgaagaa aataaagata
      361 aaatagaaaa atttgaaaaa ttttacaatg aaatttttat tggtgttgaa gcagatgaaa
      421 atggaaaagg tggaaagtta tctcttgaaa aatatttaaa tgaaaaacgg actgaaataa
      481 acaatttaat ttctagtaaa aaacaagaat tagaaaattg tttaaatgac tataaagata
      541 aatttgaaaa tttgtataaa gaaaaaaatg atgaaataga tgaattatta ccaggtgcaa
      601 cttctgcggg attagccgag gcttataaag atgaaagaga ggttgcacaa acaaatatca
      661 aaacttggaa tataattttt ggagtgtcta tattcgtttt tattattgtt tttggtattt
      721 atttttgctt ttcatttgag gaaaatttta catatataaa ttttcttaga gctttgccat
      781 ttttattttt tagcggattt tttacttatt attctacaaa gcaaattgca gaatataaaa
      841 gaatagcaag tgagtatgct tataaacaaa gattaaatca aacttataaa gggtatgaaa
      901 ctcaaataaa agaaacagag aacgaggaac taaaaaatca acttttaaaa attatgctag
      961 attctgcaga aaataatcca agcaagatac ttgataaaaa aggtgaaatt cctagtttaa
     1021 gcttgattga aaaaatgctt gatattcttc catttaatac attgaaaaga cttcaagata
     1081 aaattaaagc aaaaatagaa aaataattat aaaaaactat ttaaaaaccg cacgaaaaaa
     1141 ttccatagtg ccaagctaag ccttaaagct tagcttgaaa atttatcatc agtctttcaa
     1201 atagtattct atagtagaaa ccactcttat ggttttgatg taaggtgtgt ttttatccct
     1261 gttgctgatg ctaaattgtc cttgagaagc cttttttatc ttgcctagat ggctgtttga
     1321 atcttgtgcg aattttatcg ctgcatttct agcattgagc gttgcttctt ctatcatttg
     1381 tggttttatc tcattgagtt tagtataaag gtattctatg tcataattat cgatttttgt
     1441 tactatgcca aattttgcaa gacttgaaat gttttctagt atgctttttc caagctttac
     1501 attttgagta tagatgagta aattcgcagt gcctatgtat cggtatgtag cttgagtgtc
     1561 gttgctataa ggatcgctta aacgatctat gatatttggc gagttgtagc tgatctcatc
     1621 ttcttttatg ccttgttttt ctaaaaattt gatgatattt tctttatctt gttctagttc
     1681 ttcgtataaa tttgtaagat tgttgtttga tcttgtgaat tttataggaa gtatcaaagt
     1741 atccgcttcg acttcttttt gacttaaacc ctttacgctt acacttcttt caagtgtttt
     1801 aaaatcactt aaagccttgt taaatccaaa agctagaatc aaacttgcta aaactatggc
     1861 taaagccata aagatattat ttgttttcat tttttctcct ttattttgat tagaaaatat
     1921 atcatatttg caaccaatac gcaagcacac attacaaaag caaggattat cggcgtattt
     1981 gcgttaatag ccccaaccac aaaagaaata agccctgcaa aaccaaattg caccgttcca
     2041 agcaccgcag aagcagttcc gctatgttct ttaaaccttg ccatagccaa agttgtggta
     2101 ttgggtgcga tgaaaccaag catagcgata cttgtaaaaa tactaagttc aaaaagcagg
     2161 aaatttggat gaaaaaaggc atttacaagt aaaatcacgg tcgatataaa cattatcatc
     2221 aaagcttttg ccaaaatttt ttcgctttcg tattttaaaa ccaatctcac attgatattt
     2281 gcacagatga caaaacctaa agcatttgcc ccaaaaagca aggcaaattt ttgctcactt
     2341 aagctaaaaa actgcgtaaa aacaaagctt gatcctgtga tataagcaaa catcgccgcc
     2401 aaagcaaaag aagcacatag tatataaacc aaaaagcgtt tatcgcttaa aacaaatttg
     2461 tagcttttca tcgcttcatg atgggaaaat tttttgtttt taagatgagg tgcggattct
     2521 tttaaaccaa aaagtatcat caaaaaaagc aaaattccca aagcaaacaa agtagcaaaa
     2581 atactatgcc atgaaaaata ctctagcaaa attcccccaa aagttggcga aagcatagga
     2641 gcaagagaac taaaaaccat catcaaagca aaaatccctg cagcttcttt gatctcaaac
     2701 aagtcattga caatagccct tgcgataacc acacctgcac aacccccaag tgcttcaaaa
     2761 aatctcaaag cgataaaagc ataaatatca tcgataatca cacaaaacaa actcgaaacg
     2821 atgaagaaaa atatccccac caaagctgga attttacgcc caaaaatatc acttaaaggc
     2881 ccatatataa gctgtcctaa agcaaaagcg ataaaaaaac ttgcgatact aagttgggtt
     2941 aaaaaagagt tagtttgaaa actttgttcc acatgagaaa gtgcaggcaa atacatatct
     3001 gtagaaagtg gtgctatgct tgacatcaaa gcaaggataa cgatgagttt aaatttagca
     3061 aagccgtgaa ttttggtgtg tttttgcatt tgtaatccta attattctaa aagaatgatt
     3121 ttaacaagtc aatcttagaa taatctttgt ttttctatgt taaatttagg gaaaaattct
     3181 aaggaaattt tatgcaaaat ttaaaccaaa atgaacaaat caaatgccca agttgtggaa
     3241 gttttatcga tatcggcact gctttatatg ctcaaatttt agataaagct aagcaagaaa
     3301 tgctaaaaca aaaaaaagaa tttgatgatg aggtaaatgc taaaagagct gaatacacca
     3361 aagctttaaa tgatttaaaa gctcaaaaga tagaacaaga aaaactcata agcgagcaag
     3421 taagccaaaa gcttctttta gaaaagcaaa aatttgaaca agaacttctc acgcaaaagc
     3481 aaaatttcca aaaagaattc agcgagaaat ttaacaaaga gcatgaaaat gaaatgaaaa
     3541 tcatgcaaga agaactcgag aaaaaaagca aagagcttag cgagttttta agcataaagg
     3601 ctgaaaatga aagactaaaa agagagcaaa aagaaaatga agaaagattg aaatttcaag
     3661 ccaaagaaga ggcttttaaa gaatttaaag aacaagaaaa caaaaatttg gaatttgaaa
     3721 gagaaaaaat gcgtcttgaa tttcaaaaaa gtactcaaga gcaagatctt aaatacaaag
     3781 aactagaaac gaattttaaa agcgtagccc aaaagctaga agacgcgcaa cgcaggatag
     3841 aacaaggctc acagcaactc caaggcgaag cagctgaact actcatagaa gaatacatac
     3901 aaagtgagta tttaagtgat gaagtaaaag aagtgccaaa gggcgtaaat ggagctgatt
     3961 gtcagcatat agtaaaggat aattttggaa atatttgcgg aagtatttta tatgagagca
     4021 agcgcactaa agaatttaat aaagaatggc ttgataaact taaactagac agtatagccg
     4081 caaaaagtga tatagcggtt ttgatcacaa aaactatgcc aaaagataaa gaaaaaacgc
     4141 attttaaaga aggaattttg atctgtactt ttaatgaatt caaaggtgtt ttagcagtgc
     4201 ttagagaaag cattataaac gcttataaac tcaaaaatgc cctacaaaac aaagatgaaa
     4261 aaaatcacat tttatacgaa tacttaaatt ctaaggaatt taacacgcaa atcactttta
     4321 tactcaaaac ttaccaaaat atgaaagaag agttagaagc tgaaaaaagg gctttgcaaa
     4381 atatatggaa aaaaagagaa agagctatag aaaatctaag ttttaattcc actgccatag
     4441 tgagttcttt aaatgcgata tttagcgact tacaaggtgg aaatttgata ggcgaagaag
     4501 ggattaaaag tcttgaaaat ttagccaaag atgaggatta attttgggct aagcccaaaa
     4561 ttaatcattc tcctgggaag tgatttggat ttttccaagg tccgtatttt acttttatgt
     4621 attctttagg gtctaaattt tgttgtggtg aggcaaaata ctcaggtttt aatgaagggg
     4681 atttgctata agctgtatca agtcctgcac gattttctgt agtggttata ggcattctta
     4741 caaaacctgt attgacataa gctgctatat ctagtgcatc ttcatcgctt aatataggat
     4801 tatccgcact cgcaccaaaa ggcatggctg attttaaaaa tcttgctaaa aatggtatca
     4861 tagccatgtg tccaccatca ggatagataa gtaaagatgg atataaatgt ccgctacctt
     4921 gttcgtaatt atcatttttt accccaagtc ctctttcgcc atggcaagca acgcaatttt
     4981 cttcaaagag tttttttcca cgcacagggt cagctgggcg atttggaaaa ttcatcttag
     5041 cgaaaaaatc tccttcaagc tttacgccgt ctttgatacc ataagcttct tttagccatt
     5101 taaaataagc taaaattgct ttcatttctt tagaatcatt aggaaatcta tgagagtcag
     5161 ttccgcccat tccgcgaatt ctatcttcaa cagagatgat tttcatcgtt tctatatcaa
     5221 gtcttggata attgtttagg acatttaaaa atggaataac atattttttt gtccctggta
     5281 aaccattgcc gtcattgtcc atgtgacagg aaatacagtt tacttcgttg cttgtctttt
     5341 ttagcttgct atagggtcct agagtacttt ctgtcttgct taaaagctct atgccataac
     5401 ggattaaatc cccttgcttg ccttttggaa catcattgat gcttaaattt ttatttggcc
     5461 attcttgcac aggtcttttg gaaagttcct taaaatactc tactccttcc ttgtcgctta
     5521 attcttctcc tactttgtaa tcactcacgc ttttagcgct aagactcaaa ctaagacata
     5581 aaccaagcaa taaaatgtgt tttttcatga ttttcctcct ttttatttgc agttcaaatt
     5641 gattttagtg tattttttct t
//
LOCUS       DAEDTT010000097         5621 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.097, whole genome shotgun sequence.
ACCESSION   DAEDTT010000097 DAEDTT010000000
VERSION     DAEDTT010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5621
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.097"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..752
                     /locus_tag="KLC54_001411"
     CDS             <1..752
                     /locus_tag="KLC54_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HBD9177779.1"
                     /translation="ILEKGMFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKITLKNTQ
                     LASVISAISHELKNPLSVIDLSLEMLKDEKLEDKKLKKELLEKISRQSIKLNALTHKL
                     NFVFNLNSEALQMQEFDLFFLCEKITKNPGFERVVLQGKSTKVKADEFLIEQVIINLL
                     SNALKYSQKEVILTARDQKIIVQDFGKGIEEDKIKLITKKFYKIDVKSDNSFGLGLFL
                     VKKILNIHKSYLEISSTLGYGSSFSFKLSQG"
     gene            756..2687
                     /locus_tag="KLC54_001412"
     CDS             756..2687
                     /locus_tag="KLC54_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HBD9177780.1"
                     /translation="MALIDLIEASKKFGDKIVLNEANFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRVIRQNGKSIAMLSQSVDFNANLSVKEAIKQELAEIYNALEEYE
                     ILHKKLEEDPSNKDYLKKIDTLMTLIDSKDAWNIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDCGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFTKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGDGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
     gene            complement(2717..2791)
                     /locus_tag="KLC54_001413"
     tRNA            complement(2717..2791)
                     /locus_tag="KLC54_001413"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2757..2759),aa:Gly,seq:gcc)
     gene            complement(2802..2888)
                     /locus_tag="KLC54_001414"
     tRNA            complement(2802..2888)
                     /locus_tag="KLC54_001414"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2852..2854),aa:Leu,seq:caa)
     gene            3069..5318
                     /gene="flgL"
                     /locus_tag="KLC54_001415"
     CDS             3069..5318
                     /gene="flgL"
                     /locus_tag="KLC54_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HBD9177781.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQGYVKDNGLDPDKDFEYDDKLDFPPTTLYVQGTKPDGTSFKSAVLVKPEDTLE
                     DVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADDRAEL
                     TGIIDAAKQEGISMDEVTNRVMQAATAAPSNGDITKLNSPVTVTINNQQFTIDLKQTD
                     FIKSKMTDTDGNATNGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMAG
                     DSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPITHTDPATGNSG
                     VVTGSNDITYGQINDIIGMFAADKIPTQSITATNGKVDANGYNNLQQLMKDSQATVDV
                     SMDYKGRISVTDKLSSGTNIEISLSDSQSGHFPQPPFSTTSSVTNGPNFSFSANNSLV
                     IDEPNVDIIKDLDSMIDAVLKGNMRADSESEDPRNTGMQGALERLDHLADHISKLNTT
                     MGAYHNTIEDVNTRSTFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTTI
                     SQLSLLNYM"
     gene            5428..>5621
                     /locus_tag="KLC54_001416"
     CDS             5428..>5621
                     /locus_tag="KLC54_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177782.1"
                     /translation="MLAPSMGEWVYKANLFLFGEFGYYYPFSLLILNYLYYKKNYKIE
                     NFKRRELFGFSLAFFSTLLL"
BASE COUNT         2166 a          752 c          962 g         1741 t
ORIGIN      
        1 ttatattaga aaaaggaatg tttaaagaat ttaatttact aaatgagaaa cttttaaaaa
       61 ctaaggataa aattctaaag aatacccaaa aaaataaaaa acaaagcgat aaaattactt
      121 taaaaaatac tcagcttgct agtgtgattt ctgctatttc tcatgagctt aaaaatccat
      181 taagcgtgat tgatcttagc ttagagatgc taaaagatga gaaattggaa gataaaaaat
      241 taaaaaagga attactagaa aaaatttcgc gtcaaagtat taaacttaat gctttaaccc
      301 ataagcttaa ttttgttttt aatcttaata gtgaagcctt gcaaatgcaa gaatttgatc
      361 ttttttttct atgtgaaaaa atcactaaaa acccaggctt tgaaagagtt gtattgcaag
      421 gtaaaagcac gaaagttaag gctgatgaat ttttaatcga gcaagtgatt ataaatttgc
      481 tttctaatgc tttaaaatat agtcaaaaag aagtcatttt aacagcaaga gatcaaaaga
      541 taatagtgca agattttgga aaaggcatag aagaagataa aataaaattg attacaaaaa
      601 aattttataa aattgatgta aaaagcgata attcttttgg tttaggactt tttttagtaa
      661 agaaaatttt aaatatacat aaaagttatc ttgaaatttc tagcacttta ggctatggtt
      721 ctagttttag ctttaaactc agtcaaggat aaaaaatggc tcttatagat ttaattgaag
      781 cttcaaaaaa atttggagac aaaatagttt taaatgaagc aaattttagt gcaaacgagg
      841 gagaaaagat tgctattata gggaaaaatg gagaaggaaa atctactttt ttaaaaacgc
      901 ttttaggcac acttccttta gatagcggta gagtaataag acaaaatgga aaaagcatag
      961 ccatgctttc acaaagcgtt gattttaacg caaatttaag tgtaaaagaa gctatcaagc
     1021 aagagcttgc agaaatttac aatgctttag aagaatatga aatactgcat aaaaaattag
     1081 aagaagatcc tagtaataaa gattatctta aaaaaataga tacacttatg actttgattg
     1141 atagtaaaga tgcttggaat atagaatcta aaataatacg cgttttaaaa gaatttagtt
     1201 tgcttgagta tgaaaatcgc attatatcta ctttaagtgg cggagaaata cgccgcgttg
     1261 ggctttgcat acttttacta aaaaatcctg atattttatt gcttgatgaa ccaactaatc
     1321 atttagatgt atatatgaca agctttttgg aagaattgct aaaaaattca aagatgtgtg
     1381 tgatttttat ttcccatgat agatatttta ttgacgctat agcacacaag tgtgtagaag
     1441 tagagcaggg taaacttagt atttttaaag gcggatatgc aaactattta gagaaaaaaa
     1501 cacaaatttt acaaagcctt gctaagagcc atgaaactct tttaaagcaa ttaaaaagcg
     1561 aagaagaatg gcttagaaga ggggttaaag caagacttaa aagaaatgaa ggacgaaaag
     1621 aacgcatttt taaaatgcgt gaagaagcga aaaaaaatcc tggagcaatc aaacgcttaa
     1681 aacttgaaat ttcaagagcg gctttaaatt ttaatggaga aaaaacgatc aatcgtaaaa
     1741 aaatgctttt tgagcttaaa aatataagca aaaatataaa caataaaaat ctttttaaag
     1801 atttttcaac gcgtatttta caaggtgaac gtatagctat cgtaggaaga aatggttgcg
     1861 ggaaatcaac attgttaaaa attcttctag ggcaaataaa acaagattgc ggtgaaataa
     1921 aacgcggaga gcttaagata ggatattttg atcaggctag aagcttggta aattctgata
     1981 aaagcttgct tgaaattttt tgtcccaatg gtggagatag ggttgaagtt cgcggtaaaa
     2041 atatgcatgt ttatggatat ttgaaaaatt ttttatttcc taaggaattt ttagataaaa
     2101 gcgtggctct tttaagcggt ggagagaaaa atcgcgttgc tttagccttg ctttttacta
     2161 aagaatatga tgttttgatt ttagatgagc caactaatga tcttgatata gctacgatta
     2221 atatattaga agaatattta cttagttttg aaggggctat tttgctagta tcgcacgata
     2281 gatactttgt tgataaaatc gcaacaaaac tttatgcttt tgagggagat ggatatataa
     2341 atattttaca cactctttac actgaatatc ttgaaaatga aaaagaaatt gaagaattgg
     2401 ataattttgc tttagaactt caaacccaag agcaaaataa taaccaaaaa gaaaaaagct
     2461 ctaaaaaatt aagctacaaa gaaaatgaga tattaaaaaa ccatcctgaa aaaatagatt
     2521 ttttagagca aaagatagct aaattaaatc aagatttatc cgatccaaat gtatatcaag
     2581 aaataggtat taacaagctt tatcaagaac ttgaagtaat gcaaaaagaa cttgaaattc
     2641 tagaaaatga gtatttttta gtattagaga aaagcgagaa tttataatta aaaagatttt
     2701 atattttttt actctatgga gcgggaaacg agattcgaac tcgcgacccc aaccttggca
     2761 aggttgtgct ctacccctga gctattcccg caaaaaataa gtggtgcccg aggtcggact
     2821 cgaaccgaca caaggttgcc cttaccagat tttgagtctg gcgcgtctac cagtttcacc
     2881 actcgggctc atttttaaga tttaaagcta aaattatact tttttaggct aaaaaatact
     2941 ttaaaaataa aaagtatttt caaaaagacg atataaaatt atataattta aatttttgga
     3001 acagttattg cttttgttta ttagcaatgt ttgaaaagat tttaacttta atactttaga
     3061 ggaaaaaaat gagaattaca aataaactta acttcacaaa tagcgtgaat aattctatgg
     3121 gcggtcaaag tgctttatat cagatatctc aacaacttgc ttcaggttta aaaattcaaa
     3181 attcatatga agatgcaagc acttatatag ataatacgcg tcttgaatat gaaattaaaa
     3241 cattagagca agtaaaagaa tcaactagta gagctcaaga aatgactcaa aatagcatga
     3301 aagctttaca agacatggtt aaacttcttg aagattttaa agttaaagta actcaagctg
     3361 caagcgatag caattctcaa acctcaagag aggctatagc aaaagaacta gaacgcataa
     3421 aagaaagtat agttcagctt gcaaatacca gtgttaatgg tcagtatctt tttgcaggtt
     3481 ctcaagttgc aaacaaacct tttgattcta atggaaatta ttatggagat aaaaataata
     3541 ttaatgtagt aactggagct ggaactgaaa gcccatacaa tataccaggc tgggatttat
     3601 tttttaaagc agacggagac tataaaaaac aaataagcac caatgttagt tttacagata
     3661 atcgttggga tttaaataaa gaccctgata aaactaaata tctcacagga gattctaaat
     3721 ggcaacagct tatcggacaa ggttatgtaa aagataatgg tttggatcct gataaagatt
     3781 ttgaatatga tgataaacta gattttcctc caacaactct ttatgttcaa ggtactaaac
     3841 ctgatggaac aagctttaaa agcgctgtac ttgtaaaacc tgaagatact ttagaagatg
     3901 taatggaaaa tatcggagct ctttatggta atactccaaa taataaagta gtagaagtaa
     3961 gcatgaatga tagtggtcaa attcaaatta cagatctaaa gcaaggcaac aacaaactcg
     4021 attttcacgc tgtagctttc acaccacaag ccgatgatag agctgaactt acaggtatta
     4081 ttgatgctgc caaacaagaa ggcatttcaa tggatgaagt tacaaatagg gttatgcaag
     4141 ctgctacagc tgctcctagt aacggagata taacaaaatt aaacagccct gtaactgtaa
     4201 caatcaataa tcaacaattc acaatcgatt taaaacaaac tgattttatc aaaagtaaaa
     4261 tgacagatac agatggaaat gctactaatg gggctgatta tgataatgta tattttgaaa
     4321 aaaatggaaa tactgtttat ggtaatgttt ctcaagttat caaaggaagc aatgcttatg
     4381 cgactgattc aaccaaactt agtgaggtaa tggcaggaga tagcctaaat ggtactactt
     4441 taaatttaaa agtcaattcc aaaggtggaa attcttacga tgttactata aatttacaaa
     4501 cttcaactgt aagctatcct gatcctaata atccaggtca aactataagt tttcctataa
     4561 cccataccga tcctgcaact ggaaatagtg gagttgttac aggatcaaat gatattactt
     4621 atggtcaaat taatgatatt ataggtatgt ttgctgcaga taaaattcca acccaaagca
     4681 taacagctac aaatggaaaa gttgatgcaa atggttataa taatttacaa caactcatga
     4741 aagattcaca agctactgtt gatgtaagta tggattataa aggccgtatt agtgttactg
     4801 ataaactttc ttcaggtact aatatagaaa tttctcttag cgattctcaa agtggccact
     4861 ttccacaacc accatttagc acaacttctt cagtaacaaa tggtccaaac tttagtttta
     4921 gtgcaaacaa ctctttggtt attgatgagc caaatgtgga tattattaaa gatttagatt
     4981 caatgattga tgctgtttta aaaggcaata tgagagcaga ttctgaaagt gaagatccta
     5041 gaaatacagg tatgcaagga gctttagaaa ggcttgatca tttagcagat cacattagta
     5101 agcttaatac aaccatgggt gcatatcaca acacaataga agatgtaaat actcgttcta
     5161 cttttttaag cgtgaatgta caatctatca aatcaaatgt tattgatgta gattatggtg
     5221 aagcaatgat gaatttaatg caagttcaac ttgcatatca agcttctctt aaagctagta
     5281 caacaatttc ccaacttagc ttattaaatt atatgtaaaa ttttttatgg tataatttgg
     5341 ctttgatttt attttcaagg aaagaatatt aaaaaagaag ccatttttac cagctctaca
     5401 cttgttattt tttatctttg tctttgtatg ctagcaccta gcatgggaga atgggtttac
     5461 aaggctaatt tatttttatt tggagaattt gggtattatt atccattttc tttgcttata
     5521 ttaaattatc tctattataa aaaaaattat aaaatagaaa attttaagcg tagagaactt
     5581 tttggttttt ctttagcctt tttttctact ttacttttat t
//
LOCUS       DAEDTT010000098         5597 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.098, whole genome shotgun sequence.
ACCESSION   DAEDTT010000098 DAEDTT010000000
VERSION     DAEDTT010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5597
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.098"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..251)
                     /locus_tag="KLC54_001417"
     CDS             complement(<1..251)
                     /locus_tag="KLC54_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177783.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRK"
     gene            complement(238..840)
                     /locus_tag="KLC54_001418"
     CDS             complement(238..840)
                     /locus_tag="KLC54_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177784.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            complement(837..938)
                     /locus_tag="KLC54_001419"
     CDS             complement(837..938)
                     /locus_tag="KLC54_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177785.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            complement(935..1156)
                     /locus_tag="KLC54_001420"
     CDS             complement(935..1156)
                     /locus_tag="KLC54_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HBD9177786.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLAILVVLTIWGLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            complement(1153..2016)
                     /locus_tag="KLC54_001421"
     CDS             complement(1153..2016)
                     /locus_tag="KLC54_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HBD9177787.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            complement(2016..2279)
                     /locus_tag="KLC54_001422"
     CDS             complement(2016..2279)
                     /locus_tag="KLC54_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HBD9177788.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYWYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            complement(2284..2949)
                     /gene="ccoO"
                     /locus_tag="KLC54_001423"
     CDS             complement(2284..2949)
                     /gene="ccoO"
                     /locus_tag="KLC54_001423"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HBD9177789.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDTENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            complement(2962..4428)
                     /gene="ccoN"
                     /locus_tag="KLC54_001424"
     CDS             complement(2962..4428)
                     /gene="ccoN"
                     /locus_tag="KLC54_001424"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HBD9177790.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            complement(4554..5234)
                     /locus_tag="KLC54_001425"
     CDS             complement(4554..5234)
                     /locus_tag="KLC54_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HBD9177791.1"
                     /translation="MSQECKELIILVVEDEIKTRESLINVLSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDCLVGEKIEANMLVKISEEYQFNKTKRTLIHNGKEIVLTKK
                     ELAFISLLLKQPGVLVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            complement(5237..>5597)
                     /locus_tag="KLC54_001426"
     CDS             complement(5237..>5597)
                     /locus_tag="KLC54_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GHKL domain-containing protein"
                     /protein_id="HBD9177792.1"
                     /translation="DYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITITFSKFGKN
                     YLKITIKDNAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNG
                     KDGACFEVFLKLKERVE"
BASE COUNT         1956 a         1107 c          670 g         1864 t
ORIGIN      
        1 atttttcttt taccaataaa agtgatttta tcattttgaa aatttacttt aaaaaattta
       61 tcaaaattta cttgttgttt ttgtatttga ttgtaattat tttcaacatt ttgataagag
      121 tcaaaataaa aatcatcctc atacacagga tggtgacttg ctataaaaat cgttacaata
      181 caagcaataa ttatagccaa aagtgaaagc aaaataccat aaggccaaaa acttttttta
      241 gtttctaaca ttttttttcc tctttattct tctttgtgca tagtataaca atgcaaagca
      301 aataaatcca tagataagta ttcttaagat attgatagta tcacgatttg cattgcctat
      361 agaatgttct aattgtaatc ccaaggattt tgccacacga tctacaatat ctgcataacc
      421 attaagtata gcagcattat aaatatcacc tttatttgta gctaatatcg gcaaaataga
      481 tcctgttcca ggataaggac taagtacagc ttctttatca atcaaagcta aagcaccttt
      541 tgagcccact atatcaactt tgtgagaatt ttttgacaaa agaagcaata tataagattg
      601 aggaagttct ttttgtttat ttagtaaagt ttcaatttca gttttatcac caaccataac
      661 accgataaaa atattacttt tttggtaaag ctcttttcct ataagattaa tctcattact
      721 tactttttga cttaaaatat tttcattaaa aagtacagca tcaagagcaa aaaccctaga
      781 aggcaataaa acaaagaaga agatggctaa aaaaaaacca tcttgtaata tttttttcat
      841 cctatatgaa gatgatttac ggtcaaaacc gaccaagcgg tgattgcagc agcaacaact
      901 aaaccaataa caattaaata ttccaaagcc ttactcattg tgcttccttt atacttctat
      961 gatcttgttc ttttgaacca aacatcttta cactttgtac atctttaaga ctatatggct
     1021 tttgcatcac ttcttgctga gctttaagac cccaaatagt taaaactact aagatagcaa
     1081 gtaacaaaac cgtagcaatt aacatacctg taacacctga aagagaaaac acgcatctat
     1141 tattattttc catcattcac cccttgaaag agaaattaca tactcgccaa cagcttcttt
     1201 ttgaatatca ttaagtgttg gaaaactcgg cattgttcct ataaaaccag ccttaccact
     1261 atgtaaaaca tctactacaa aagctgcaga accgtatttt gtaagatctg ggaacattcc
     1321 atcttgacct tttccatctt ctccatggca tgctgcacaa gttgcataag cttctttacc
     1381 ttttgctact aaattttcat ttgcagtttt cttaatagct gaaagatctt ttgctacata
     1441 agcagcaata gcagggatat cttcttctgc cacacctaaa tcagcagcac caagcatttc
     1501 tccacctgga aaattcatac cttttgaacc atgtttaatt acattgatta taccttcttc
     1561 gctaccccaa atatttaaat tttgagcttt accattgata ccatcgcctg taattccatg
     1621 acaagctgaa cactgaacta aaaagatatt ttgacccatt gctattttat cttcaggaga
     1681 taaattttta aatttttctt cgaattttgt attatgagtt gctacttctt cattgtattg
     1741 acctatactt gaaaaagaat ttaaaggata tccccataga aaataccaaa tagcccaaac
     1801 aatagtcagg aaaaatacca cagcccaacc agtaggaaca gcatttttat actctcctat
     1861 tccatcccaa ctatgttcac taagctctga ctcgcctttt ttttctttca tttgcttaaa
     1921 cattctaccc acaataacta gtgtgattaa aatgataaga atagctccaa ttaaagataa
     1981 gagattaaca ttatcttcta aatttaacca ttgcattaag cactcctttt actttctaat
     2041 acactatcat caatatcatc ttttaaggca aggtttgcat aattttcata atttctctcg
     2101 cctttttttt ctgttctata taaatgatac caatacgcat ataatactat tgacaaaaac
     2161 atcacgagtg caaaaaaacc ataaccttgg aaaatctccc actcatgttt ttgaactgtt
     2221 gctaaatcaa atgtgattaa atttttaatc acatcaaaaa ctattgataa atgttccatc
     2281 atcttacttt aagctattta aataagcgat caaagcaact atttctttga tttcaccttt
     2341 agcaaaagca tcttttactt cttgattttt catttgatca actatagcct gagcttcagc
     2401 ttttacttca gcttgcgcat cctcccaaga accaagtttt gttccatttt ctgtatcata
     2461 aggaacattg aaaacttttt tcacagttaa agcctcagca taagcagttt caatatctgc
     2521 attattttta aacatatgct tatatgaagg cataatagaa tctggaacaa cagaagtagg
     2581 atcccacata tgattttcat gccaatcagc cgttctataa tttcctacac gagcaagatc
     2641 aggtcctgtt ctttttgaac cccaaagaaa aggtctatca taagcaaatt caccacttac
     2701 agaatacata ccataacgat ctgtttctga tttaaatgga cgaataagct gtgaatgaca
     2761 agcattacaa ctatctttaa tatatactgc acgccctgca agttgtaaaa ctgtataagg
     2821 ttttttacct tcaattggtc ttgcattttc tgcaaaattt ggcaaaactt caactatgcc
     2881 tgcataagca atcactacaa aaacagctac agcaaaaaag aatggatttt tttctaacca
     2941 actaaacata ttttctcctt tttatgctgc cataggcgaa gcgctttttg gttctttatc
     3001 aagcactctt ccacaagcaa ttgttttgta aatattataa gtaaacataa agaaaccgat
     3061 aagatacaac aatccaccaa tcgctctaat ccaataataa ggaacaatag ccacaacagt
     3121 atcaatgaag ctataaagca agttaccata ctcatctgtc gctctccaca tcataccttg
     3181 agtaataccc gcaatccaca ttgaagcaaa ataaagaact atacctgtgg tttgaatcca
     3241 aaattgagct tccattaaag atttgctata aagctctctt ttgaaaactc taggggtcat
     3301 atgataaagc gcagccatag tcataaatcc tacccaacct aatgttccat catgaacatg
     3361 tcctggaatc caatctgtaa agtgtgctaa agcattaaca gatttaattg aaagaattgg
     3421 cccttcaagt gttgagaaca tatagaaagt tgatgccaaa atcataaatt taatcaatgg
     3481 actctcgcga agctgactcc actcaccttt catagtaagc aatatattaa tcgctgaacc
     3541 ccaagaaggt aaaatcaata ctacagagaa aaccgaaccc atagtttgca tccaatcagg
     3601 tacagttgaa taaatcaaat ggtgaccacc tgcccaaaga taaacaaaca ttaagcccca
     3661 aaatgcaaat aaagagagtt tataagagaa aatcggctga ccactttctt ttggcaagaa
     3721 gtaataaatt tgagcaataa tacccacagt aaatacaaat gccacagcat tatgtccata
     3781 ccaccattgt actaaagcat catttgttcc tgcatacatt gatacactat gccaccattt
     3841 acccattcca gtaacaaaat aagttggtac ttccatgttg ttaaaaagat aaagcatagc
     3901 tatacctaaa aatgtagcta tataatacca tagagaaata taaagagttt tttcacggcg
     3961 aattccaata agtccaaaaa tacttacacc ccataaaacc caaacaagaa caacaagaat
     4021 gtctaaaggc cactcaagct ctgcatattc tttagatgta gtcacaccca taaacaaaga
     4081 tataacagct aaaaccatag taagcatata aagccaaaaa tgaagcttac caacagccat
     4141 taaaaatctt gactcagcca tactcacttt aagaacacgc tgacctatat aataccaagt
     4201 tgcccaaatc cctgaaagca taaaaccaaa aatcacacct gaagtatgaa gtggtctaag
     4261 tcttgaaaaa gtggcatatt ctcctgctaa ataatttaaa ttaggatatg ccatttgaaa
     4321 agctataaga gttcctatag ccataccaac aatgccgaac aatatggtcg caaacataaa
     4381 atatcttgca accgtatagt cgtaatttaa tacattacct ggatgcatcg actttctcct
     4441 taaaattttt gataacaaga gaatattata gaatattaat tatacatttt ttcttaaaaa
     4501 tgataatttt gttaatcatt tgttatgctt tatattttaa ggctaaatca gtcttattta
     4561 ttgatattta tcttataacc taaacttggc acatttttta taaaatcttc acccacttta
     4621 tctcttactc tttttataaa tgttcgaaca gcagtatcgc tcacatgctc acctatccaa
     4681 acatttttct taatatcttc atgcaaaacc aaaaccccag gttgttttaa aagcaaagaa
     4741 ataaaagcca attctttttt agttaaaaca atctctttac cattatgaat caaagttcgt
     4801 ttagttttgt taaattgata ttcttcggaa atttttacaa gcatgtttgc ttcaattttt
     4861 tcacctacta aacaatctaa gactttgaat aattcttcta tatcaacagg tttaattaaa
     4921 tatttatcta taccgatatc aatggaacgc aaaagtctct ctttctctga atacgcacta
     4981 agaacaacaa ttgggacatc atctgaaatt tctttaatct ctcttgccat atccaatcca
     5041 tccataatag gcatagcaat atctgtgata actaaatccg gtttaaattt tttaaatttt
     5101 ttaagccctt catctccatt ttgagctccg attactttac taaagcgttc gcttaataca
     5161 ttaatcaatg attctctagt cttaatttca tcttcaacta ctaatattat caattcttta
     5221 cattcttgtg acatttttac tctaccctct cttttagctt taaaaatact tcaaaacaag
     5281 ccccatcttt tccattctta acttttattt ttccttggaa actttcgata atttgtctac
     5341 ttatataaag tcctactcct ataccctgac taggatgttt tgttgtaaaa taaggttgaa
     5401 aaattttatc taagttttct ttatcaatcc caccagcatt atcttttatt gtaattttca
     5461 gataattttt tccaaatttt gaaaaagtta ttgttatgat ttttcttttt ttgtttttaa
     5521 atgcttctat tgaatttaaa atcaagttaa gaaaaactct tattaaacca ttctcatatg
     5581 ccaaaacttc ataatca
//
LOCUS       DAEDTT010000099         5441 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.099, whole genome shotgun sequence.
ACCESSION   DAEDTT010000099 DAEDTT010000000
VERSION     DAEDTT010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5441)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5441)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5441
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.099"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1241
                     /locus_tag="KLC54_001427"
     CDS             <1..1241
                     /locus_tag="KLC54_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HBD9177793.1"
                     /translation="KWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVILVLA
                     FPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILLVYSA
                     NLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFLVFPF
                     IIFLFIFSLLLIPQWNSSLFTNVDFSVISTSNFWVTLWLVIPVMVFSFNHSPIISSLA
                     CYCKKEYGDYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNINILT
                     FIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGKIQGKFAQT
                     LTAIITFAIAWLVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFRNKFL
                     DLFILVMGIVAISAAIHDLL"
     gene            1256..2620
                     /locus_tag="KLC54_001428"
     CDS             1256..2620
                     /locus_tag="KLC54_001428"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HBD9177794.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLC
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAQLEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEIRAYCLEIWEVM
                     QEVYYSGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGANAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2628..3149)
                     /locus_tag="KLC54_001429"
     CDS             complement(2628..3149)
                     /locus_tag="KLC54_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177795.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDAL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNEAKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLVFLMICLLLLVMGVINLGLLFKQIRILKSFSKEEMK
                     EFLSQRMKKYTKV"
     gene            complement(3130..4140)
                     /gene="ribD"
                     /locus_tag="KLC54_001430"
     CDS             complement(3130..4140)
                     /gene="ribD"
                     /locus_tag="KLC54_001430"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HBD9177796.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     GKILAIKAHEKAGLAHAELNAIAHAFKSLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDENKIASGGAEFLKKQGIEIEFDI
                     LKEEGKKLLKPFLKWQKEQFKLFKLALSMNGSPFGKIVSNELSRTYAHKIRAVIDLLV
                     VGGETIRKDHPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKTFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            complement(4345..4432)
                     /locus_tag="KLC54_001431"
     tRNA            complement(4345..4432)
                     /locus_tag="KLC54_001431"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4396..4398),aa:Ser,seq:tga)
     gene            complement(4454..4527)
                     /locus_tag="KLC54_001432"
     tRNA            complement(4454..4527)
                     /locus_tag="KLC54_001432"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4493..4495),aa:Cys,seq:gca)
     gene            complement(4546..4634)
                     /locus_tag="KLC54_001433"
     tRNA            complement(4546..4634)
                     /locus_tag="KLC54_001433"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4598..4600),aa:Leu,seq:taa)
     gene            complement(4644..4718)
                     /locus_tag="KLC54_001434"
     tRNA            complement(4644..4718)
                     /locus_tag="KLC54_001434"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4684..4686),aa:Gly,seq:gcc)
     gene            complement(4790..>5441)
                     /locus_tag="KLC54_001435"
     CDS             complement(4790..>5441)
                     /locus_tag="KLC54_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177797.1"
                     /translation="NHDLYFSRNIEVSNTLKPDILYANINFWANENLSSKITLDNSEK
                     AEIANTFNQILERSKKENFCSGGSFSLEPNFSYKDGIQTPKGQRFDAILECEFKENQL
                     ADFNKLLNDINSIIAKNNFISVSTPAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTY
                     SLDLNKTCVLKNLQVNTNVNIAPRMLNAKSDNIELSSPIISEKEQILSAKALFICK"
BASE COUNT         1675 a          799 c          944 g         2023 t
ORIGIN      
        1 ctaaatggac tagtcacgat acaaggtggg ttttatctct ttttggaaca gctattggag
       61 ctggcgtact tttgttacct attagtgctg ggcttggtgg attgatacct ttgttagtta
      121 tacttgtttt agcttttcct atgacttact tagctcatag aaatttatgt cgctttgtgc
      181 tttcaagttc taatccaaaa gatgatatta cttttgttgc agaaagttat tttggcaaag
      241 gtggtggatt tttaattaca cttttgtatt tttttgctat tttacctatt ttattggttt
      301 atagtgctaa tcttacaaca actttgcttg agttcttaat caatcagttt aatttcaatg
      361 cagatcttac tcatgctgct cgttggtggg tgagtttttt gattgttgga gttttggttt
      421 tgatttctat tcttggtgaa aatgttgtaa caaaagcaat gagttttctt gtttttcctt
      481 ttattatatt tttatttatt ttttcattgc ttttaattcc acaatggaat tcatcattat
      541 ttacaaatgt tgatttttcc gtaatttcaa caagtaattt ttgggttact ttatggcttg
      601 ttattcctgt gatggtattt agttttaatc actctcctat tatttcttca cttgcttgtt
      661 attgtaaaaa agaatatggt gattatgctg agcctcgcgc tagaaaaatt atttctttgg
      721 caattattct tatggttttt gttgtaatgt tttttgtttt ttcttgtgct ttaaccttta
      781 caccagaaga ttttgcatca gcaaaagatc aaaatatcaa tattcttact tttatagcaa
      841 ataaatttcc tgaagtttct ttactagctt atgttgggcc tattgttgcg cttgtggcta
      901 ttagcaaaag tttcttaggg cattatcttg gttctcaaga aggcttaaat ggtattttat
      961 ataaagcaag taatggtaaa attcaaggta aattcgctca aactttaaca gcgatcatta
     1021 cctttgctat tgcttggctt gttgcgtata aaaatccaag tgttatagga attattgagg
     1081 ctattggtgg tcctgttttg gctattttgc ttttcttaat gccactttat tgtatttatc
     1141 gttttgatat tttggcaaga tttcgtaata aatttttaga tctttttatt ttggtaatgg
     1201 ggatagttgc aatttctgct gcaattcatg atcttttata aattaaggat aaaaaatgag
     1261 taatttaagc atttttaaaa taggtgttgg tccttcttct tctcatactt tagggcctat
     1321 gcttgctgga aatttatttt gtaaaaaagt cgctaaaaag cttgatgaaa ttgatagagt
     1381 tgaggttact ctttatggtt ctttgtcatt aacaggtaaa ggacacttga gtgataaggc
     1441 tgtaatttgg gggttaaatg gcctagaagc taaaaattta agcgcagcaa tacaagatga
     1501 agtaaataaa aatgctattg aaaatgctca aattgatttt tgtggtgaga aaaaactttg
     1561 ttttaattat gaaaaagatt tgatattttc caaagatttt ttacctttac atgagaatgg
     1621 tatgaagatt aaagcttatg attgtaaagg tgggttagtc gatgaagaaa cttattattc
     1681 tgtaggtgga ggctttgttt taacagctgc acaattagaa aaaaaaggta aaaattccaa
     1741 ccaaaataaa aagaaaaaac tagatataga gcttaacaat gcaaaagaag ctttagagct
     1801 ttgcgataaa agagattggg atttagcaga gctttcttat cgttatgaat tgcaatttca
     1861 cactaaagag gaaattcgtg cttattgtct tgaaatttgg gaagtaatgc aagaagtgta
     1921 ttatagtggt acgcatccaa atgaagatta tttgcccgga aaacttcatt taaagcgtag
     1981 agccaaagga cttaaagaaa gagtggcgat gacagctgat cctatgggca ttatagattt
     2041 tatttcttta tatgctattg cgattgctga agaaaatgct agcggagcaa aagttgtaac
     2101 cgcgccaaca aatggagcat gtgctgttat ccctgctgtt atgctttatc ttaaaaatca
     2161 tactataggt tttagtgatg aaaaggctat agagttttta ttaacagcaa tgcttatagg
     2221 ttctttttat aagaaaaatg caagtattag cggagcagaa gcaggttgtc aagcagaaat
     2281 tggtagtgct agttcgatgg cagctgcggc tatggcaaca gttttagggg ctaatgcttt
     2341 taaagcatgc aacgctgctg aaatggcaat ggaacatcat ctaggtttaa cttgcgatcc
     2401 agttgcagga cttgtgcaaa ttccttgcat agaaagaaat gcctttggag ctattaaggc
     2461 tataagtgct gctagaatgg caatgacacg caaatctact cctatggtaa gccttgatga
     2521 ggttatagaa accatgtatg aaacaggaaa agatatgaat tataaataca aagaaacttc
     2581 tttaggtggt cttgctacaa atttaaaaac agtatgctaa agtgttttta cactttagtg
     2641 tattttttca ttctttgact taaaaattct ttcatttctt ctttggaaaa acttttaaga
     2701 atacgaattt gcttaaaaag caagccaaga ttgatcactc ccatcactaa aagcaataag
     2761 caaatcatta aaaaaacaag atctatggct ccaaattcat taatcatagc caaacttgca
     2821 aaaaatacac tcgctaataa taaaaaaaat aaaagcaata tttgttttaa ttttgcttca
     2881 ttaaaattat cgcaattttg agtgaaattt ctaaaaagta tgatcttttt acccaaattt
     2941 gaaactaaaa tttcatcatt ttctttaaat aagccttctt ttaaactttg ataaaaaaag
     3001 atttcattgt ttaaatttaa agcatctttg tagcttgata aggtgtagtc tttgtaaaaa
     3061 aaggatttta attcattttt cttttctatt ttaaataatc ttaaatcatt tctcgcataa
     3121 aaaaatccac taaagttcat aaatgccata agtatcactc cctaaaaaat tcctataaag
     3181 tggcttgaaa tttaaaggta ttgtaacatt tttttcatca tttaaacttg aactttggaa
     3241 aatcaaaaac atatctattt catctttaaa ggttttgaga aaattttctc caccctcata
     3301 cattaaaaat ttagcttcac ttggaatttg ggtataaatt tggcggtttg gaactttaaa
     3361 taaagggata tttttatcaa aattatctat attttgacgg cttaagatac aaagattagg
     3421 cgcttttgct ttgcaaagcc tagcatctag tataggatga tcttttctta tggtttctcc
     3481 accgactaca agcaaatcaa tcaccgctct aattttatgt gcataagtgc gacttagctc
     3541 attgcttacg attttgccaa aaggcgagcc attcatagaa agggctaatt taaaaagttt
     3601 aaattgctct ttttgccatt ttaaaaaagg ttttaaaagt ttttttcctt cttctttaag
     3661 tatgtcaaat tcaatctcta tgccttgttt ttttaaaaat tcagccccac cacttgcgat
     3721 tttattttca tctttaacgc tgatgaaaat ttttttaaaa cctagctcgc taaagagttt
     3781 tgcacaagga ggcgtttttc cttgatgaga gcaaggctca agtgtgacaa aagctatgct
     3841 atctttaaat acaccttgat ggtttttgca aataaactca tgcaaggcgt ttgcttcttt
     3901 aggcaatgaa atttcaggtc ttaagctttt aaaagcatga gctatggcat taagttccgc
     3961 atgagctaat ccagcttttt catgagcttt tatggctaaa atttttccat ttttatctaa
     4021 gattacacag cctacagccg gatttggata ggttaaaaac tgatatttcc aagcctcatt
     4081 taaggctaaa ttcatataaa attctttcat ttgcctacct tgtattttaa aatttgacat
     4141 atttttaaaa ttttatattt ttattttaag ataacaaatt ctaaattttc catttgtatt
     4201 tcttattttt aattatatta gccatagttt ttctaagttt tttaggatat aacaaaaata
     4261 gtaagaccga agtattattt ttcatttgta gtatccttta taatttcagg aatgatataa
     4321 gcttgataaa ctagaaagtc ttggtggccg ggagaaaggg attcgaaccc ctggaggtgt
     4381 gaccctcaac ggttttcaag accgccgctt tcgaccactc agccatctcc cgataaagta
     4441 aagttttgcc ttttggaggc gacatccgga ttcgaaccgg agatcaaggc tttgcaggcc
     4501 catgccttac cgcttggcta tgtcgccctg ataatgttga aaaagtggtg cccgaggccg
     4561 gacttgaacc ggcacggaag aaaaattccg agggatttta agtcccttgt gtctaccaat
     4621 tccaccaccc gggcgggtga ttatggagcg ggaaacgaga ttcgaactcg cgaccccaac
     4681 cttggcaagg ttgtgctcta cccctgagct attcccgcat aaatttctga aagaattgaa
     4741 gataaaagta tagcaaaata aacttaaaag gagtttattt tgccttaagt tatttgcaaa
     4801 taaataaagc tttcgcgctt aaaatttgtt ctttttcgct gataattgga gatgaaagtt
     4861 ctatattgtc agattttgca tttaacattc taggtgcgat attgacattt gtatttactt
     4921 gtaaattttt caatacacaa gttttattaa gatctaaaga gtaagttttt tcatattcgt
     4981 atgatgtttt taaaagctct ttgtagagat tttctttgtt gttgtttagt gtatcttttg
     5041 aaaattttgt ttgtatggct ggtgttgaaa cgctgatgaa attattttta gctatgatag
     5101 aattgatgtc atttaaaagc ttgttaaaat ctgcaagttg attttcttta aattcacatt
     5161 ctaaaattgc atcaaatctt tgaccttttg gagtttgtat accatcttta taggaaaaat
     5221 taggctctaa agaaaaactt cctccgctac aaaaattttc tttttttgag cgttctaaaa
     5281 tttgattgaa agtatttgcg atttcagctt tttcgctatt atccaatgtg atttttgagc
     5341 ttaaattttc atttgcccaa aaattaatat ttgcatataa aatatcgggt tttagcgtat
     5401 tgcttacttc tatatttctt gaaaaatata aatcatgatt a
//
LOCUS       DAEDTT010000100         5434 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.100, whole genome shotgun sequence.
ACCESSION   DAEDTT010000100 DAEDTT010000000
VERSION     DAEDTT010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5434
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.100"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(19..813)
                     /locus_tag="KLC54_001436"
     CDS             complement(19..813)
                     /locus_tag="KLC54_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HBD9177798.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIANFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFYENKLEKIHEYCESDVLNTYMLFLKYELI
                     KANVDEEDYVDFLSYMRDFLREKKSDRSYTEVFAKACESEISKVRS"
     gene            879..1907
                     /gene="waaC"
                     /locus_tag="KLC54_001437"
     CDS             879..1907
                     /gene="waaC"
                     /locus_tag="KLC54_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HBD9177799.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKILKSLKILLKARKNNYNAVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQAKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFNLEELMAFTKMMDLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDAGKKIQNTKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            1897..2775
                     /gene="htrB"
                     /locus_tag="KLC54_001438"
     CDS             1897..2775
                     /gene="htrB"
                     /locus_tag="KLC54_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HBD9177800.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPECILHFLALIVARITFYLNKK
                     HRKIIDTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENFLIDALALKRPIIFTTAHYGNWEILSLAYAAKYGAISIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKERALGILTDQDCVENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEDGKFCIEFFKAKDSQNANLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNQGIYS"
     gene            2772..3473
                     /locus_tag="KLC54_001439"
     CDS             2772..3473
                     /locus_tag="KLC54_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HBD9177801.1"
                     /translation="MNISIVILTFNSQKYLQEVLQSVNFANEIILIDSGSTDDSLIIA
                     KTFKNVKIFHQDWLGFGKQKQFGVEKANNDWIFVLDSDEVFTEELKEEVLQIIKNPSF
                     KAYKVARLNFFFGEAITKMGLYPDYNIRLFHKKYAKFNEREVHESIICQEKIGKLKHH
                     FLHYAYENIEQFIDKQNKYSSLNPKKNNLLKALINPYWTFFKLYFVKLGFLEGKRGFI
                     IAKLYAQYTFWKYIK"
     gene            3484..4362
                     /gene="rfbA"
                     /locus_tag="KLC54_001440"
     CDS             3484..4362
                     /gene="rfbA"
                     /locus_tag="KLC54_001440"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HBD9177802.1"
                     /translation="MKGIILAGGSGTRLYPSTLTLCKQLLPIYDKPMIYYPISVLMLA
                     KIKEVLIISTPKDIDRFKELFKDGSFLGMQIQYKIQERPEGLAQGLILAQDFIQNDDI
                     ALILGDNIFYGQGFSDILENAKDDLKKGFASIFSYHAKDPERFGVVEMDQNGNVLSLE
                     EKPKNPKSNHVATGLYFYNNDAIDIAKNIKPSARGELEITDVNIEYLRLNKLKSQHLG
                     RGFAWIDTGTHDSLIEASSFVQTIELRQGYKIACLEEIAYNNNWIDNETLEKRALLLS
                     KSNYGQYLYKILSQGK"
     gene            4362..5393
                     /gene="rfbB"
                     /locus_tag="KLC54_001441"
     CDS             4362..5393
                     /gene="rfbB"
                     /locus_tag="KLC54_001441"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HBD9177803.1"
                     /translation="MYILVTGGAGFIGSNFLLYFFEKNPNAKIINLDFLTYASNISNL
                     NKLKNNPNYVFIQGDISDVFLVNEIFSKYKINAVINFAAESHVDNSIKNPDIFIKTNI
                     YGTWNLLNSAYKTWFLEPFLKKDKFKQSFFYQISTDEVYGSLGENGKFTEDNAYAPNS
                     PYSASKASADMLVRSYHHTYGLNAVISNCSNNYGPFQHDEKLIPTIIRNALNNTQIPI
                     YGDGKNIRDWLYVKDHCVAIESIYKYAFEKIKENNSFFDVFNIGANEEWQNIDIANKI
                     CSYLDNVLPKNTSYKEQITFVKDRTGHDRRYAIDSTKLQKTIDWKAQENFNSGLEKTI
                     KWYIEKYKG"
BASE COUNT         2129 a          746 c          783 g         1776 t
ORIGIN      
        1 atatactttc ttaaatactt aagatcgaac ttttgaaatt tcactctcac aagcttttgc
       61 aaaaacttct gtataagaac gatctgattt tttttcacgc aaaaaatctc tcatataaga
      121 aagaaaatca acataatctt cttcatcaac attagcttta ataagttcat attttaaaaa
      181 aagcatataa gtgtttaaaa catcgctttc gcaatattcg tggatttttt caagtttatt
      241 ttcataaaaa agtttcatta cctcatcgcc atgcacatca tattttcctg gcaaacccac
      301 catagaacaa agtgtatcaa gctttattcc gcgcccatta gatcctaagg attctaataa
      361 atcacaatgt tttaattctg aaaatcttgt tttataatta ttccatttat cactttgagt
      421 atccaaataa gttgctgctt ttaaattgta ttttaaagcc cttaaaacga gaacaggcat
      481 atcgaaattt ttaccattaa aactgactaa ttttggctca taattttcta taaaattaaa
      541 aaaattagca atcatttctt tttcattttg tccatcaatt ttatttactt tgataaattt
      601 tccaaaatta tcacttaaaa ccgcacaaat actaataatt ttatgataag gcaaaggcaa
      661 aaactcactc ccactttgtt ctttttgcca ctgaagtgct tttaaactta cctccaaatc
      721 acttccttca aaacccaaag ttttgcgaat aagctcaaca tctggtacac tctcgcaatc
      781 aaaaacacaa atataacctt cattttttgc catttttaac ctttttttaa ataatttcgc
      841 taaaatcata gcaaaaattt taaaatatta ggcttttaat gaaaatagca attgttcgtt
      901 tatcagcact tggtgatatt atccaaagtg ccgtggtttt gcaatttatc aaaaatttta
      961 aaaaagatat agaaattcat tggtttgtag atgaaaaatt tgaaggcata cttaaaaacc
     1021 atcctttaat agacaaactc tatgccctac ccttaaaaga caaaaaaatt ttaaaaagcc
     1081 taaaaattct tcttaaagca agaaaaaaca actataatgc agtaatagat ctacaagggc
     1141 ttataaaatc tgctattgta agtcgaattt taagtagaaa taattttggt tttgataaaa
     1201 acagccttaa agaaagtttt gctcataatt tctacaacca aaaacttgag ttagattaca
     1261 atgaaaatgt atttgtaaga tacttaagtc ttacctcctt tatgttaaat actgatttta
     1321 atgtcaaaaa tttagccttt aaacaagata tttttagcgt agatgaaaat ttaaaacaac
     1381 tcttaaacaa taaactcaag ctcgacaaaa acgaaaaaaa catactcata cacgtaggtt
     1441 caagtgtaga aaataaaatc tatcctaaaa ccaaacttgc tatactttgc aaacttttaa
     1501 tcaatgaatt tcaacaagca aaaatttggc tcgcttgggg aaatgtaaaa gaatacgaat
     1561 ttgctaaaga ggttttaaat cttagtggta ttgatgaaac acatatagaa ttagcgccaa
     1621 aattcaatct tgaagaacta atggctttta caaaaatgat ggatcttatc ataggaaatg
     1681 atagcggccc aacacatttg gcttttgctt taaataaggc atctattacg atttttggtg
     1741 caacaccaag ctaccgcaat gcttttcaaa ctcatatcaa taaaatcatt gatgcaggta
     1801 aaaaaatcca aaataccaag catatcgata aaagtgattt ttgtatcacg cgtatagaag
     1861 aagaagatat cttcaaactt gccaaaggct tacttaatga aaaatagtga tagaatatat
     1921 cttagtcttt attatatttt gaaatttttt gttactttta tgcctgagtg tatcttgcat
     1981 tttttagctt tgattgtagc aagaatcact ttttatctta acaaaaaaca tcgcaagatc
     2041 atcgatacaa atttgcaaat ctgcttccct caatacactc aaaaagaacg cgataaacta
     2101 tctttgaaaa tttatgaaaa ttttgctcaa tttggaattg attgtttaca aaatcaaaac
     2161 accaccaaag aaaaaattct caataaagta aattttatca atgaaaattt tcttatagac
     2221 gctctagctt taaagcgtcc tattatcttc acaactgcac actatggaaa ctgggaaatt
     2281 ttaagccttg cttatgcagc taaatatggt gcgatttcca tagtgggaaa aaagttaaaa
     2341 agtgaaatta tgtatgaaat tttaagccaa agtcgtactc aatttgacat agagcttatt
     2401 gacaaaaaag gcggtataag acaaatgcta agcgctctaa aaaaggagcg agctttggga
     2461 attttaactg atcaagactg cgtagaaaac gaaagcgtaa gattaaaatt ttttaacaaa
     2521 gaagtgaatt atcaaatggg agcaagcctt atcgcacaaa gaagcaatgc tttgatcatc
     2581 cctgtttatg cctataaaga agatggtaaa ttttgcatag agttttttaa agcaaaagat
     2641 tctcaaaatg caaacttaga agaactgaca ctttatcaag cacaaagttg cgaagaaatg
     2701 attaaaaaaa gaccttggga atactttttt ttccatagac gctttgcaag ttataatcaa
     2761 ggaatatact catgaatatt tcaatagtaa tactaacttt taatagccaa aaatatcttc
     2821 aagaagtatt gcaaagtgtt aattttgcca atgaaattat tttaatagat agcggaagca
     2881 cagatgatag tttaataata gcaaaaactt ttaaaaatgt gaaaattttc catcaagatt
     2941 ggcttggttt tggaaagcaa aaacaatttg gagttgaaaa agcaaataat gattggatat
     3001 ttgttttaga tagtgatgaa gtttttactg aagaattaaa agaggaagta ttgcaaataa
     3061 ttaaaaatcc atcatttaaa gcatacaaag tagcaagatt aaattttttc tttggagaag
     3121 caataacaaa aatggggcta tatcctgatt ataacataag actatttcat aaaaaatatg
     3181 ccaaatttaa tgaaagagaa gttcacgaaa gcataatctg tcaagaaaaa atagggaaat
     3241 taaaacatca ttttttacat tatgcttatg aaaatatcga gcaatttata gataaacaaa
     3301 acaaatactc aagtctaaat cctaaaaaaa ataaccttct taaagcttta ataaatcctt
     3361 attggacttt ttttaaactt tattttgtaa aattaggttt tttagaaggc aaaagaggtt
     3421 ttatcatagc aaagctttat gcacaatata ctttttggaa atatattaaa taggagtgca
     3481 acaatgaaag gcattatttt agctggaggt agtggaacta gactttatcc tagcacatta
     3541 actttatgca agcaactttt acctatatac gataaaccaa tgatttatta tcctatatct
     3601 gttttaatgc ttgcaaaaat taaagaagtt ttgattattt ctactccaaa agatattgat
     3661 agatttaaag agctattcaa agatggttct tttcttggaa tgcaaattca gtataaaatt
     3721 caagagcgtc cagaaggttt agcacaagga cttattttgg cgcaagattt tattcaaaat
     3781 gatgatattg cattaatttt aggagataat attttttacg gacaaggctt tagtgatatt
     3841 ttggaaaatg caaaagatga cttaaaaaaa gggtttgcta gtattttttc ttatcatgca
     3901 aaagatccag aaagatttgg agtggtagaa atggatcaaa atggaaatgt tttaagcttg
     3961 gaagaaaaac ccaaaaatcc aaaaagcaac catgtggcaa ctggtttata tttttataat
     4021 aatgacgcta tagatattgc aaaaaatata aaaccaagtg caagaggaga acttgaaata
     4081 acagatgtaa atatagaata tttaaggtta aataagctaa aatcacaaca tttaggaaga
     4141 ggttttgctt ggattgacac aggaactcac gatagtctta tagaagctag ttcgtttgtg
     4201 caaaccatag aattaaggca gggttataag attgcctgct tagaagaaat agcctacaat
     4261 aacaactgga tagataatga aaccctagaa aaaagagcat tgttactttc aaaaagtaat
     4321 tatggtcaat atttatataa aatacttagt caaggaaaat aatgtatatt ttagttactg
     4381 gcggagctgg ttttataggt agtaattttt tattatattt ttttgagaaa aatccaaatg
     4441 ctaaaattat aaatttagat tttttaacat atgctagcaa tatatcaaat ttaaataaat
     4501 taaaaaataa tcctaattat gtatttattc aaggagatat aagtgatgtt tttttggtta
     4561 atgaaatttt cagcaaatat aaaataaatg cggttataaa ttttgcagca gaatcacatg
     4621 tagataattc tataaaaaat ccagatattt ttataaaaac aaatatatac ggaacttgga
     4681 atttattaaa ctcagcttat aaaacttggt ttctcgaacc ttttcttaaa aaagacaaat
     4741 ttaaacaaag tttcttttat caaataagta cagatgaagt ttatggatct ttgggagaaa
     4801 atggaaaatt tacagaagat aacgcttatg ctccaaattc cccttattca gcttcaaaag
     4861 caagtgctga tatgcttgtt agaagttatc atcatactta tggattaaat gctgttattt
     4921 ctaattgttc taacaattac ggaccttttc agcatgatga aaaacttata cctaccataa
     4981 taagaaatgc attaaataac actcaaattc caatatatgg agatggtaag aatataagag
     5041 attggctata tgtaaaagat cattgcgtgg ctatagaaag tatttataaa tatgcttttg
     5101 aaaagataaa agaaaataat agcttttttg atgtatttaa tataggagca aatgaagaat
     5161 ggcaaaatat agacatagct aataaaattt gttcttattt agataatgta ttgccaaaaa
     5221 atacttctta taaagagcaa attacttttg taaaggatag aacaggtcat gatagaagat
     5281 atgctataga ttctacaaaa ttacaaaaaa ctatagactg gaaggcgcaa gaaaatttca
     5341 atagtggttt agaaaaaact ataaagtggt atattgaaaa gtataagggg tgatattgaa
     5401 ttatcaaatt ttaaatttta aacttataaa tagt
//
LOCUS       DAEDTT010000101         5263 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.101, whole genome shotgun sequence.
ACCESSION   DAEDTT010000101 DAEDTT010000000
VERSION     DAEDTT010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5263)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5263)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5263
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.101"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            69..1055
                     /locus_tag="KLC54_001442"
     CDS             69..1055
                     /locus_tag="KLC54_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HBD9177804.1"
                     /translation="MNKFSIVLTLLLCGSCALALDPNLEKTKSATGIDLPTAKWNLSK
                     ALNEDGTIDETKMPKNSEYSKMVILGNKILNETSKYVGPQAKDPKKRFAGNNLSCSSC
                     HANGGSVQNQSGFVGIWARFPQYNARGDKVITLADRINGCFERSMNGKRMPSDTPEMK
                     AMLTYMQWLSQGVPVGAKIEGQGLKKIDFISRAADPKKGKAIYMDKCAVCHQENGLGL
                     KNEDSAGAYYLYPPLWGDDSYNTGAGMYRLIKAASYIKENMPQGAPDLSLEDAYDVAA
                     YMNSQARPIKANRDKDFPDRKVKPLDMDVGPYDDSFSTTQHRYGPYTNMIKK"
     gene            complement(1089..1730)
                     /locus_tag="KLC54_001443"
     CDS             complement(1089..1730)
                     /locus_tag="KLC54_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HBD9177805.1"
                     /translation="MRKFFCKFVLTLVFCSSFALANNSFITLNPSLPNSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFAFAQYKDEQNG
                     KDASYSDSLSHKLADVYFVSYFLNKQRNFSNLDEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(1816..3678)
                     /locus_tag="KLC54_001444"
     CDS             complement(1816..3678)
                     /locus_tag="KLC54_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
                     /protein_id="HBD9177806.1"
                     /translation="MRLSKTLCMALLAGSTLLAPNALMAMGGPSGAKIDWQIQGQIGA
                     IKMNPYGLSPLTAIIMDNGYVLSDIKVTIVPKPNGQTISYNVNSKMAKTYGGIPIFGL
                     YPSYLNTVKVSYTKTANGKSQKVIDEIYKITTPGVSIEPSGSTDQRGTPFENVKVLKM
                     DPKFSDRLYLVNNAPGKQSGKGSQSVWNNPVGGAMEWDENSNVFIIDTKGEIRWYFDN
                     DKLMNWDNIYNRGIMMGFHQNKDGALTWGFGQRYVKYDILGREIFNRKLPAAYIDFSH
                     AMDNMQNGHYLLRVASANTLRPDGKHVRTVRDTIVEVDENGNVVDDWRLYEILDPYRS
                     TIIKALDQGAVCLNIDASKAGKTLSDEELAKMDESDKFGDIAGTGIGRNWAHVNSVDY
                     DPSDDSIIISSRHQSAVVKIGRDKKIKWILGAHKGWNKEFQKYLLQPVDKNGKKIVCD
                     DDYSKCPGYENDNGGFDFTWTQHTGWRIDSKSNKRYIYISVFDNGDARGAEQPAFASQ
                     KYSRAVIYKIDQQNKTVEQIWEYGKNRGNEWFSPVTSLTQYEPDKDSIMVYSATAGMA
                     FDLSKGVSLGEPKPEIDEFNWGAKEPSVQIQFSGSGTGYQAMPFSVDQAFNLKK"
     gene            complement(3778..4575)
                     /gene="dsbI"
                     /locus_tag="KLC54_001445"
     CDS             complement(3778..4575)
                     /gene="dsbI"
                     /locus_tag="KLC54_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HBD9177807.1"
                     /translation="MSCIKMKDNCRKFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMEPCEQCVYIRFDMLVMAIGGMIALINPTNNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLHEWAPSWFLPTGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFIVLFAMFIA
                     YVLDKNKLNAKIFALVIVILVLVLKFIGEPKNPNQNIASLNHLNQVV"
     gene            complement(4572..5234)
                     /locus_tag="KLC54_001446"
     CDS             complement(4572..5234)
                     /locus_tag="KLC54_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HBD9177808.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYIILKNPIANADNS
                     LIEIFSYRCTHCYDHHKFNTMGKVKEKLPNLTYKFYPVSSMGDYGRQANEIFAFAAFK
                     DGVNKIDPTDKNSLTHKVAKAYFNAYFKKKQRWENGKNPEAFYSVGLKAMNVSKADLE
                     NFLKTPEAAELLKSYEIANPISQNYGTPAFVVNGKYQIIPSAINSPEALIEITKELSK
                     QK"
BASE COUNT         1798 a          919 c          766 g         1780 t
ORIGIN      
        1 ttttattgac tttttctaaa taaagtctta tactgaattt aaattacgca aaataaggag
       61 gaaaattgat gaataaattt tctatagttt taactttgtt gttatgtgga agttgtgctt
      121 tagccttaga tccaaatttg gaaaaaacca agagtgcaac aggtattgac ctgcctactg
      181 ctaaatggaa tttgtctaag gctttaaatg aagatggcac tatagatgaa actaaaatgc
      241 caaaaaattc agaatatagc aaaatggtta ttttaggaaa taaaattctt aatgaaacaa
      301 gcaaatatgt gggtccacag gccaaagatc ctaaaaaaag atttgcggga aataatcttt
      361 cttgttcaag ctgtcatgct aatggtggaa gtgtgcaaaa tcaatcgggt tttgtaggaa
      421 tttgggcaag atttccacaa tataatgcca gaggagataa agtaattacc ttagcagata
      481 ggatcaatgg ctgttttgaa cgctctatga atggcaaaag aatgcctagc gatacacctg
      541 aaatgaaagc catgctaact tatatgcaat ggttatctca aggagttcca gtaggagcta
      601 agatagaagg gcagggactt aagaagatag attttatctc aagagcagct gatcctaaaa
      661 aaggtaaggc aatttatatg gataaatgtg ccgtttgtca tcaagaaaat ggcttagggc
      721 ttaaaaatga ggatagcgca ggggcgtatt atctttatcc accactttgg ggtgatgata
      781 gttataatac aggagctgga atgtatcgtc ttatcaaagc tgcttcttat attaaagaaa
      841 atatgcctca aggtgcgcct gacttaagtc ttgaagatgc ttatgatgta gcagcttaca
      901 tgaattcaca agctcgccct attaaagcaa atagagataa agactttcca gatagaaagg
      961 ttaagccttt agatatggat gtaggacctt atgatgatag cttttctaca acccaacatc
     1021 gctatggacc ttatacaaat atgatcaaaa aataatttta aggcaatttt tattgcctta
     1081 aaaatttatt atttcatatt gcttaatttt ttaactagat cttctaaatc ttgcattgaa
     1141 ttgattgcgc ttgggttaat ttgatatttt ccattaacaa caaaagcagg ggtgccatag
     1201 gttttagcta tatcattagc tctttgaaac tcgcttaaaa tttctttagc ttttggggta
     1261 tttaaaaaat ttaatacttc atttttattt acattcatag cctttaagcc tatgtcgtaa
     1321 aattcatcta aatttgaaaa atttctttgc ttgtttaaaa aataagaaac aaaataaaca
     1381 tcagcaagtt tatgagataa actatcagaa taactcgcat ctttaccatt ttgctcatct
     1441 ttgtattgag caaaggcaaa aagctcattc atttctttgg aaaattcccc attcattaaa
     1501 cttacaggat agagtttaaa atgtaaattt ggaaaagctt ctcttagttt ttcaagagtt
     1561 ccaaatttat gatgattata acaatgtata catttataag aaaatgcttc tattacacta
     1621 ttttcagagt tgggtaaact tggattaagg gtaataaaac tattatttgc taatgcaaaa
     1681 cttgaacaaa atacaagcgt taaaacaaat ttgcaaaaaa atttacgcat attatatcct
     1741 tggttaaata aaattttcaa agataatttt atttaaaaaa aataaataag cccaaattta
     1801 tttttgggct tattgttatt ttttaagatt gaatgcttga tcaacactaa aaggcattgc
     1861 ttggtaaccc gtgcctgaac cgctaaattg aatttgaacc gaaggttcct tagcgcccca
     1921 gttaaattca tcaatttcag gttttggttc cccaagactt acacctttgc taagatcaaa
     1981 agccattcca gctgttgcgc tataaaccat aatagaatct ttatctggtt catattgagt
     2041 tagagaagtt acaggagaaa accattcatt tccacgattt ttaccatatt cccaaatttg
     2101 ttccacagtt ttattttgct gatcgatttt ataaattaca gcacgagaat atttttgact
     2161 tgcaaatgca ggttgttcag ctcctcttgc atcaccatta tcaaaaacac ttatataaat
     2221 ataacgcttg tttgatttac tatcaattct ccagcctgta tgttgcgtcc aagtgaaatc
     2281 aaatccacca ttgtcatttt cataacctgg gcatttgcta taatcatcat cacaaacaat
     2341 ttttttgcca tttttatcta caggttgcaa taaatatttt tgaaattctt tattccaccc
     2401 tttatgtgct cctaaaatcc attttatttt tttatcacga ccaattttaa caacagcact
     2461 ttgatggcga ctagaaataa taatactgtc atcacttgga tcataatcaa cgctatttac
     2521 atgagcccaa ttcctaccta tacctgtacc tgctatatct ccaaatttgt cgctttcatc
     2581 cattttggca agctcttcat cgcttaaagt tttacccgct ttgcttgcat ctatatttaa
     2641 acacactgca ccttgatcta aagctttgat aatggtactt ctataaggat ctaaaatctc
     2701 atacaatctc caatcatcaa caacattacc attctcatct acttctacaa tagtatcacg
     2761 cactgtgcgt acatgcttac catctggacg caaagtattt gctgaagcta ctcttaataa
     2821 ataatgccca ttttgcatat tgtccatagc atgagaaaaa tctatatagg cagcaggtaa
     2881 tttgcgattg aaaatttctc ttcctaagat atcatatttt acatatcttt gaccaaatcc
     2941 ccaagttaaa gctccatctt tgttttgatg aaagcccatc ataattccac gattgtaaat
     3001 attatcccag ttcattagtt tatcgttatc aaaataccat ctgatttcac ccttagtatc
     3061 tatgataaag acatttgaat tttcatccca ttccatagca ccacctacag gattattcca
     3121 tacagattgt gagcctttgc cagattgttt tccaggagca ttatttacta aatatagcct
     3181 atctgaaaat tttggatcca tttttaatac tttcacattt tcaaaaggag ttcctctttg
     3241 atcagtactt ccacttggtt ctatgctaac ccctggagtt gtaattttat aaatctcatc
     3301 aatgactttt tgacttttac catttgcagt tttagtataa cttaccttta ccgtatttaa
     3361 ataagaagga taaagtccaa aaataggaat tccaccgtaa gtcttagcca ttttagaatt
     3421 cacattataa gaaatagttt gaccatttgg tttaggaaca atggttactt ttatatcgct
     3481 taagacataa ccattgtcca taataatagc ggtcaaagga gacaatccat aaggattcat
     3541 tttaatcgcg cctatttgtc cttgaatttg ccaatctatt ttcgctccac taggaccacc
     3601 catggccatt aaagcattag gtgcaagtag ggtagaaccc gccaaaagtg ccatgcaaag
     3661 agttttgcta agtctcatga tcaatccttt aaaattattt aagccatcct aaaatagctt
     3721 aataaaattt taataatacg cagcaaaaat aatttgttgc gtattttaag agtatcttta
     3781 aacgacttga tttaaatgat ttaaactagc tatattttga tttggatttt ttggttcgcc
     3841 tataaattta agcactaaaa ccaaaataac aatcaccaat gcaaaaattt tagcattaag
     3901 tttattttta tctaaaacat aggctataaa cattgcaaaa agcacaataa aacaacataa
     3961 aaatgctata agacagcaaa ttgccatatt cataaacttt aaactaggaa tcaaatacca
     4021 accattgcta taaagcccat tttcaaaatc aggtggagtt cctataaaaa atttttgaaa
     4081 agcattaaga tgattataag cattttctgg aactacaggg gtatccatcc cacattctcc
     4141 tgttggcaaa aaccaactag gagcccactc atgcaaaggt aaattaaatg gataaatagg
     4201 aatttcacga catccatcta cacctgcaaa aggattttca gaatgaacca cttcatgaat
     4261 atgatttaaa gttagacaat gctccaagcc aagccaaatt ccataaaaag ctaagctata
     4321 agaaaaaatt tttataatat tatttgtagg gttgattaat gcaatcatac cgcctatagc
     4381 cataacaagc atatcaaatc ttatatacac acattgttca caaggttcca taaaaagata
     4441 ttcttgaaat aaaaaatgtg ctatacaagt aagtcctata gtaactataa tcaaaattaa
     4501 ccaaggtttg cgcgtatctt gccatttaga aagtgaaaat tttctgcaat tatctttcat
     4561 ttttatacaa ctcatttttg tttgctaagt tctttagtaa tttcaatcaa agcctctgga
     4621 gagttgattg cacttggaat gatttgatat tttccattaa caacaaaagc aggggtgcca
     4681 taattttgcg aaataggatt ggcaatttca taacttttta aaagctctgc agcctctgga
     4741 gtttttaaga aattttccaa atcagcctta ctcacattca ttgcttttaa accgacacta
     4801 taaaaagctt caggattttt accattttcc catctttgtt ttttcttaaa atatgcatta
     4861 aaataagctt tagcaacttt atgagttaag ctatttttat ccgtaggatc aattttattt
     4921 acaccatcct taaatgccgc aaaagcaaaa atttcattag cttgccttcc ataatctccc
     4981 atagaactta caggataaaa tttgtaagtt aaattaggta atttttcttt aactttaccc
     5041 atggtattaa atttgtgatg atcataacaa tgagtacagc gataagaaaa aatttcaatc
     5101 aatgaattat cagcgttagc aataggattt ttaagaatta tatattcttt accttcactt
     5161 aatgcactag cacttatacc tgctaaaaaa gcacatacaa caatagatct tgctaatttt
     5221 actggaaatt tcattacctt ctccttgaaa tttggttttg ata
//
LOCUS       DAEDTT010000102         5255 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.102, whole genome shotgun sequence.
ACCESSION   DAEDTT010000102 DAEDTT010000000
VERSION     DAEDTT010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5255
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.102"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..233)
                     /locus_tag="KLC54_001447"
     CDS             complement(<1..233)
                     /locus_tag="KLC54_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD9177809.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKASEILFLDLYDTRFEKQSLERLADFL"
     gene            complement(300..749)
                     /locus_tag="KLC54_001448"
     CDS             complement(300..749)
                     /locus_tag="KLC54_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HBD9177810.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEEAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            complement(876..2096)
                     /locus_tag="KLC54_001449"
     CDS             complement(876..2096)
                     /locus_tag="KLC54_001449"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HBD9177811.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLSL
                     IDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILNS"
     gene            complement(2090..2914)
                     /gene="galU"
                     /locus_tag="KLC54_001450"
     CDS             complement(2090..2914)
                     /gene="galU"
                     /locus_tag="KLC54_001450"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HBD9177812.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGKPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVIFGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEIQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(2996..4969)
                     /gene="acs"
                     /locus_tag="KLC54_001451"
     CDS             complement(2996..4969)
                     /gene="acs"
                     /locus_tag="KLC54_001451"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HBD9177813.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQALEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPDEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDAIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPGLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSGVVETIVKLAKAEFE"
     gene            complement(5107..>5255)
                     /locus_tag="KLC54_001452"
     CDS             complement(5107..>5255)
                     /locus_tag="KLC54_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9177814.1"
                     /translation="KSDVFIRVSCMDKILEFALEKQEFLKFDLKLYEELSLYFYEDAI
                     CFLN"
BASE COUNT         1696 a         1012 c          677 g         1870 t
ORIGIN      
        1 ttcagaaaat cagcaagtct ttctaaactt tgtttttcaa agcgtgtatc atataaatct
       61 aaaaacaaaa tttcacttgc tttaaattga gataaaaaat taaaaataag tgttttttta
      121 ccacaaaatc gtgggccttt tatgataata tttggttttg aaatttgatt ttttctttca
      181 taacttactt caaatttagg gtggttttca taaaaaaaat taagtacttt caaaatttta
      241 tcctttaaaa aaggatatta taacctagtt tgtataattg gggcataaag ccccttaaat
      301 tacattttgc aagcaccttg taaagtagcg cctatcatcc aaagactttt ttcatatttt
      361 gcgatatttt cttgcgcaaa agcagctgtt gtagtatcgc tttctttttc tgcttcttca
      421 ttgagttttt taaattctgc taaaagatat tcataatctt gtttgatcag ttctatgact
      481 tcaagcggag taaagcaatc ttttgcaact tttggacttt ttgcattttc cattaaaact
      541 ttttggcaag tgatagcttt ttcgccaagt tgtaaaactc tttcagcaca actatcaaaa
      601 agttctgcca tttcttcata agctttttct gtgtactcgt gtatagaaaa aaattgcaaa
      661 ccttttacat tccagtgata attatgaaat ttaacccata gatgatgagc atctgcttgc
      721 atttgtaata attgttttgt aactgacatg attgactcct ttttttaatt tttaaaatta
      781 taacataaaa ttcttaaata ataattatta ttaattaaaa atttttatta taattttaac
      841 ttaaaatcat tatactcttt tttaatgaat tttgattaag aatttaatat attttttaag
      901 atcaactttc caacttccac accaggttga tcataagtgt taatccctag cataacaccg
      961 caagttgaag taaaaagttc ataataatac atcaaatatc ccgcatgcca agcgtcaagt
     1021 ttttcaagtt ctatcacatc aacactcaaa ttttcagcga ttaaagcgtg catagttgca
     1081 tcacattgag cgtttaaaag ttcgtgaaga ttgactttat tgcttaaaga atctaaaaat
     1141 ttaaaatgaa tatcagggat aataggtgct ttttgagcgt ctttgatttt taaaaaagtt
     1201 acagttttat ttttaggtcc atccatgatg agttgtaaaa aactatgctg atctcttgcg
     1261 ccaataagtg caataggagt caaacctatg cgtttatagc cttgcttttt acctaaactt
     1321 tcagcaataa gctgaatata ccattcatta aagcctttaa aagcatcact atatgaaaaa
     1381 agtacattga tattggcatt tttatgcgtg caataatggt aggctttttg taaaatttca
     1441 tcttttttgt gagtaaaaaa atcttcaaaa caagctttag ctccttccaa aagagctttg
     1501 gcattatagc cacaaaaaca aagcggaact atacctacgg ctgaaagtat gctaaaacga
     1561 cctcctacat ttgcagggat aaaaaagcat ttaataccta aattttcacc ttcttgatga
     1621 agttttgaat ccttatcggt aataaaaaca aagtattttt ttaattcttg catatcaagt
     1681 ttaaaatgtt caataagaag tttaaaaagc gatacgactt ctatagtgct acctgtttta
     1741 ctgatgatta aaaacaaact ttcttcaagc ttgatttttt ctaaagtctt attaaaagaa
     1801 tgtgaacttg tgttatcgag tataaaaagt tctctttgat tacttttttc attaaaaagc
     1861 atatcacgca aggcttttac accgcaactt gaaccaccca ttcccactaa aacaatattt
     1921 tttatgtgtt ctttgtcttt gataaaagcc aaactctcat caatcaggct taagctcgtg
     1981 tcaataagat gataataccc tatatctcca ctttttacct catcattaat acgatttgca
     2041 taagagctta tagtgtgaat ttcactttgt ttaaaaaaaa gtgtattgtt taacatttac
     2101 ttttctcgta aaaataattt gtagcctcta caaagccttc tacacttcca caatcaaagc
     2161 gtttcccttg aaatttataa gctaaaacca taccattggt tgcttgagtt aaaagcgcgt
     2221 cggtaagttg aatttcgcca ttttttcccg ctttagtatt ttctaaaatt ccaaaaatat
     2281 caggagttaa aatatatctt cctatgatag caagattact tggagcttca tcaggacttg
     2341 gtttttctat catagaatta accatgataa gattttcttc tacaaaattt ccaaaaatta
     2401 ctccatagtt tgaaacttgt tcttttggta cttccatcac agctatgatg gtgcagcgat
     2461 atttttcata aatttttacc atttgagcca taacatttaa gccttcttcg ttgacacaca
     2521 aatcatcagc caaaattacg ccaaaagctt catcaccaac caaaggttta ccttttaaaa
     2581 ccgcatcacc taatcctttc atttgatttt gtcttgtaaa agtaaaggtg caacgattga
     2641 tcaaagagcg aatttcatca agtaagtatt ctttttttgt acctgaaatt tgatgctcaa
     2701 gttcataaga aatatcaaaa taatcctcca aagctctttt tccacgccct gtgacaaagc
     2761 ccatattttc cattcctgct tccaaagctt catcaacccc ataatggatc aaaggcttag
     2821 ttaagatagg taacatctct ttaggtaaag tttttgttgc aggtaaaaat ctcgtcccat
     2881 aacctgccgc agggaaaata caagtttgaa gcataaaaat ttccttttat ttttttatca
     2941 ttatagctta tttttatgaa tttttatgca acaaggcaaa gttctttttg ccttgttatt
     3001 caaactctgc cttagctaat ttaacaatag tttctactac tccagaatct tcgagcgttg
     3061 aaatatcctg tttgatttct tcacctcttg ctatagttct taaaattctt ctcattattt
     3121 taccacttct agtttttggc aaacctggag tataaagaat tttttctatt ttagctatag
     3181 gtcctatttc tactcttaaa atgtcattaa gttcttttaa agtttctata gctccgccaa
     3241 gatcacaact ggatgcagga cttaaaacca caaaagcaaa cagtgactcg cccttaatcg
     3301 catccaaaat actcactaca gctgattctg ctacacttgg atgtttagca atagcgcttt
     3361 caatttcagc cgttcctata cgatgtcctg caacattaac cacatcatct gttcttcctg
     3421 tgatagttat ataaccattt ttatcataaa aagcaccatc gccactaaaa tatacagctt
     3481 ttccatcttt tttagcttga gaaaaataac tttctatata gcgttcatca ttaccccaaa
     3541 ttccacgaat catcgaaggc caaggtttgg ttatacaaag caatccatct tcaccttcat
     3601 cttttttatt gccttcttca tcaataactt ctgcaaaaat tcctggcaaa ggcaaggtag
     3661 cacaacctgg ttttaaagga gtagcgcctg gtaaaggcgt gatcatatgc ccacctgttt
     3721 ctgtttgcca ccaagtatcg actataggac ttttagttcc ccctatttca tcataaaacc
     3781 acttccaagc actaggattg ataggctctc caaccgttcc aagcacttca agcgtactta
     3841 aatcatattt tcttggctca tcaggtgcat cagcatgaag cattcttatg gcagttggcg
     3901 aagtgtagaa tttgcttatt tgatactctt ctatcattct ccaccaacgc ccagaatttg
     3961 gataagtagg agttccttca tgcattatag tcgttgctcc acatgctaaa ggcccataaa
     4021 ctacataagt atgtcctgta atccaaccca catcagcact acaccaataa ttatcataat
     4081 ctttaatatc aaaaacccat tccatagtca tttgtgccca aagtatatat cctgcacttg
     4141 catgcataac tccttttggc ttgcccgttg atcctgaagt gtaaagcaaa aacaacaaat
     4201 cctcgctatc catgatttcg ggttcacact tataagactc atttttcaca agttcgttat
     4261 aaacatagtc ccttccttta atatattcta taggctcatt attgcgtata actataagta
     4321 ctttttctac actttcacac ccttcactta aagccttatc tactgcaggt tttaacatat
     4381 aaggtttgcc acgacgaaaa gcaccatcag ccgttactac aagtttagct cctgcatcta
     4441 taattctatc tcttaaggct tcaggagaaa accctccaaa taccacacta tgaatagccc
     4501 caatccttgc acaagctaac attactatag ctgtttctgg aatcataggc atataaatta
     4561 caaccctatc gccttttttt actccgaatt ttttaagcaa attggccgcc ttgcaagttt
     4621 catgcaataa tcttctataa gtataaactt cataatcccc catttcacct tcaaaaatca
     4681 aagcagcttt attgcgtctt gttttcatat gacgatcaag acattgataa cttacattta
     4741 aagttccacc ttcaaaccat ttataaaatg gagctttatc ctcatttaac actcttgaaa
     4801 aaggcgaaaa ccactcgatc ttctcaagtg cttgtctttt ccaaaaacct tcaaaatctt
     4861 ccttggcttc atcgcataaa tcatagtatt cacataaatt ttttatacga gcattacgag
     4921 aaaattcttt acttggctta aaaagctctt gattattttg attaagcata aaaactcctt
     4981 tatggttatt tttaaacatt atataagagt ttatttgtat taaatacaaa tttaaaaaat
     5041 aattaagata aattttataa aaaatgggaa tatttgtaat attttattta aaatttataa
     5101 tgtatgttaa tttaagaaac atattgcatc ttcataaaaa taaagactga gttcttcgta
     5161 taattttaaa tcgaatttta aaaattcttg tttttctaag gcaaattcta aaattttatc
     5221 catacaactt acccttataa aaacatcact tttcc
//
LOCUS       DAEDTT010000103         5225 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.103, whole genome shotgun sequence.
ACCESSION   DAEDTT010000103 DAEDTT010000000
VERSION     DAEDTT010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5225
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.103"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            26..1186
                     /locus_tag="KLC54_001453"
     CDS             26..1186
                     /locus_tag="KLC54_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD9177815.1"
                     /translation="MTALFAGMAFLFAGNALIVSSIGVILKENGESSLAVGVVSSCFF
                     VGALVGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVLRFFIGICYY
                     GLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHSVFILSATLI
                     LLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGFFSMASLFIL
                     LQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFITMLIFIFFK
                     LHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCYSLGSLFGPL
                     ILGFLMQYFEIKGFIWFYIISLAFLILFAINKPNILNKKFKKKPGNMVIFDD"
     gene            1179..3428
                     /locus_tag="KLC54_001454"
     CDS             1179..3428
                     /locus_tag="KLC54_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HBD9177816.1"
                     /translation="MINTQLASQIVNTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKTLSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSSKNE
                     NKQILNQSSFKALLNLSSKLENFKNYISKNPSHAQEKITPIANKILKELNSIKNDFFK
                     ALNKPENLMIKDPNILKQTATAFEKLENTLKNILGNQASKIQDKENILENLLSNKENM
                     KEEKLNHNTKNQDEEKHIKASKEETLTDDTKTDIKQDSKNEENSHAKETDIKEDENLD
                     SDIKTHEEDTQDTKNDIQNNETENKPDNDIKNSTPNQEKIKDGKQEKSKENIKENPKF
                     YETKTENKTSINTNTNTSNPNTNNTQNLNNSQNIQSNNNQTMQNIFKNQEFIKQNIVK
                     NLAFNVENLDLEQVQDLSKNLNNLSRRLNESLKELEPYTQNAKLNQAELKNLEHKLNL
                     STKDLAQIKPKTEQDIAESLHHDVKSTLLQISNLAKNEGNEAVYNQANRLLAQIEINQ
                     LMSLANDSINTYLPFSWDDLNDSKIMFRRGKKDKFFAQIKLEFAKLGDLEILISLNNE
                     KYIDINIMAENIEFRKTIYENAHELKRNINKAGLLSANFFVGDIIRSKFDTRNMKNLD
                     LEMGMDKKV"
     gene            3425..3706
                     /locus_tag="KLC54_001455"
     CDS             3425..3706
                     /locus_tag="KLC54_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HBD9177817.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(3703..4503)
                     /locus_tag="KLC54_001456"
     CDS             complement(3703..4503)
                     /locus_tag="KLC54_001456"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HBD9177818.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKS
                     PCEYESLNALFTRTLHIPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSI
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGALYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDTSIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGILNFNLKAGQGIKFGEKIAD"
     gene            complement(4500..>5225)
                     /locus_tag="KLC54_001457"
     CDS             complement(4500..>5225)
                     /locus_tag="KLC54_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HBD9177819.1"
                     /translation="TPEVKSVDVEIPNLKQDLKIAMLTDIHLGKNLHENFLDKLITKV
                     NLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYALGNHEYYHGINEVLDLL
                     RKHANMKILVNQNLDLGFINIAGLGDLAGLNKGLYAPDLARIKVDLNTSKASILLTHQ
                     PKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVHGLYNLGEKTKLYVSSGAG
                     FWGPSLRVFAPSEIVILNLKGKK"
BASE COUNT         2013 a          805 c          691 g         1716 t
ORIGIN      
        1 gagtccaaaa aaaattatta aatcaatgac agcacttttt gctggtatgg catttttatt
       61 tgcaggtaat gccttgatag taagctctat aggtgttata ttaaaagaaa acggagaaag
      121 ttctttagct gttggagtag taagttcttg tttttttgta ggcgctcttg ttggaactat
      181 cagtgctcat aaaattattt ctcgtatagg tcatatacgc tcttttgggc tatttggtgc
      241 tatttttgga atttcagcta tgcttcatac agtaagcgaa aatcttattt tttgggctgt
      301 tttaagattt ttcataggaa tttgctacta tggactttta atggtcatag aatcatggct
      361 taatgaaaaa agcaaaaatg ccattcgatc tagaatttta ggtttttatg aaattgtttt
      421 ttatcttgcg tttggtattg gagttttaat catagcgtta aatttgagca aacatagtgt
      481 atttattctc agtgcaactt taattttact ttcatcttta cctttaaatc taattaaaat
      541 caaagaacct gttttgcccg catcaagtcc tatttctata cctaaaattt ttgatatagc
      601 tcctttggct atcgtcacaa gctttatagc tggaatgctt ataaatggct ttttttctat
      661 ggcatcttta tttatacttt tgcaaggttt tgatacaaaa gcggtttctt attttatatt
      721 ttgtggggtt ttaggtggtt ttattgcaca aaccatcata ggaactattt cagataaact
      781 tggtcgcaaa tttgctatta tcacttgcgc aagcatagga tttatcacta tgcttatatt
      841 tatctttttt aaacttcatt tgtatatgca atatttttta ggaattactc ttggtatagg
      901 aatattttgt ttatatgctt tagcacttgc tagagcaaac gatgttttag taagcaaaaa
      961 taaaggcgta gagttaggtc gtggggttct tttttgttat tctttgggct ctttgtttgg
     1021 ccctttaatt ttaggttttt taatgcaata ttttgaaatc aaaggtttta tatggtttta
     1081 tataatttct ttagcatttt taattctttt tgctatcaat aaaccaaata ttttaaataa
     1141 aaaatttaag aaaaagcctg gaaatatggt gatatttgat gattaatact caactagcaa
     1201 gtcaaattgt caatacgcaa aaaaatgatt taaaagtaga taactctgct tcaaaagata
     1261 aaacaaattt aaaagacaat ccaaaagaag cacttgcaca agctttaaag caaaatttag
     1321 gtttaagcaa ggacgctagt agtgaggaaa tactagcaaa atttgttcaa aatgaaacag
     1381 gtaccaaatt aaaagaactt gttaataaac ttttagatca aatcaatgct caaaaaaatc
     1441 ccgattcccc tgtacttaaa caaggaaaaa atttaaattt agctcctaat tttgctaatg
     1501 aattaaaaac tttaagtaca gaacttgcaa aaagcgatac ttttacacaa gttttagata
     1561 gattaaatca aattttaaaa cctgccagtg aaataaaaaa caataactta gctcctttgt
     1621 ttaaaaattc aggcgtattt ttagaagcta aattaaaaga tgccctaaac gaagaattac
     1681 tacccaaaag ttttcactct cttttaagta caatcaaagg tcttagtagc gaaaaactaa
     1741 gcgttcagat agcccagctt gcaaatacaa atttaagccc aaaagacact ttaaaagaat
     1801 taaaaaatat tattaattct agcaaaaatg aaaataagca aattttaaat caaagttctt
     1861 ttaaagcact tttaaattta agttctaaat tggaaaattt taaaaattat ataagtaaaa
     1921 atcccagtca tgctcaagaa aaaatcaccc ctatagctaa taaaatttta aaagaattaa
     1981 attccatcaa aaatgatttt ttcaaagctc ttaataagcc agaaaattta atgataaaag
     2041 atccaaacat ccttaagcaa actgctaccg cctttgaaaa acttgaaaat actttaaaaa
     2101 atatactagg caatcaagct tctaaaatac aagataaaga aaatatttta gaaaatcttt
     2161 taagcaacaa agaaaatatg aaagaagaaa aacttaatca taacacaaaa aaccaagatg
     2221 aagaaaaaca tataaaagca tcaaaagaag aaactctcac agatgatact aaaaccgata
     2281 ttaagcaaga ttcaaaaaac gaagaaaatt cgcatgcaaa agaaactgat ataaaagaag
     2341 atgaaaattt agattctgat ataaaaactc acgaagaaga tactcaagat acaaaaaatg
     2401 atattcaaaa caatgaaaca gaaaataagc cagacaatga tataaaaaac tctactccaa
     2461 accaagaaaa aattaaagat ggaaaacaag aaaaatcaaa agaaaatatc aaagaaaatc
     2521 caaaatttta tgaaacaaaa acagaaaaca aaacttcaat caatacaaat accaacactt
     2581 caaatcctaa cacaaacaat acgcaaaatt taaataattc tcaaaatatt caatctaaca
     2641 ataaccaaac tatgcaaaat atttttaaaa atcaggaatt tataaaacaa aatattgtaa
     2701 aaaatttagc atttaatgta gagaatttag atctagaaca agtgcaagat ttaagtaaaa
     2761 atttaaacaa tctttctcgt agacttaatg aaagcttgaa agaacttgaa ccctatactc
     2821 aaaatgccaa gcttaatcaa gcagaactta aaaatctcga acacaaactc aatctttcta
     2881 ccaaagatct agcgcaaatt aaaccaaaaa cagaacaaga tatagctgaa tctttacatc
     2941 atgatgtaaa atcaacactt ttgcaaattt caaatttggc taaaaatgaa ggcaatgaag
     3001 ctgtatataa tcaagctaat cgtcttttag cacaaattga aatcaatcag cttatgtctt
     3061 tagctaatga ttctatcaat acttatctgc ctttttcttg ggatgattta aatgattcta
     3121 aaattatgtt tagacgcgga aaaaaggata aattttttgc tcagattaaa ctcgaatttg
     3181 caaaacttgg ggatttggaa attcttattt ctttaaataa tgaaaaatat atagatatta
     3241 atattatggc agaaaatatt gaatttagaa aaaccatcta tgaaaatgcc catgagctta
     3301 aaagaaatat caataaagca ggacttttaa gtgcaaattt ctttgtaggt gatatcataa
     3361 gaagtaaatt tgatactaga aatatgaaaa atttagatct tgaaatgggt atggataaaa
     3421 aagtatgagc aaaatcaaaa gatcaattaa aaaagctgta gctctaggct atcaaaaaga
     3481 aaaaaactct gccccaaaag tgcttgcaag tggcaaaggt gaaagtgctg ctaaaattat
     3541 ttctttagcc aaggaacacg gagttcccat taaagaagat gaagatttaa tagaaatttt
     3601 aagcaaactt gacttaggcg atgaaattcc acctaatatg tataaagctg tagctgaagt
     3661 ttttgccttt atctatcaaa tggcaaataa aactcctaaa aactaatccg ctattttttc
     3721 tccaaattta ataccctgcc ctgcttttaa attaaaattt aaaatccctt tttgagagat
     3781 taaaactata gtagaaccca gttcaaaatt tcctagttct tcgccttttt tgaaatttaa
     3841 attttcatat tttctagtaa aattatgaga aattttagca ttggtttgta tgcttgtatc
     3901 aaaattaaaa cgcatttttc ctacattttg cgctcctaca aaaacaagcc aaaaaatacc
     3961 tttttcattt tgacatttta aactcactct ttcatttttt acatataaat tactaatgcg
     4021 ttctaaatgc ttttcattta cactataaag ggcgccgctt gtgtaagttg cgcttaaaat
     4081 ttgcatatca caagggctgt gataacgatg ataatctttt ggagaaagat agatattgac
     4141 ataatcaagc ccatttttaa gctcatcttt ttcaaagcta tcttttaaaa gctcctcaat
     4201 gctataagta tgccctttta tagaaaaagc aaaatgttct tcatttgcca aaaaagtact
     4261 tccacactct aaaattttac catcacttgg actgataaaa ccttcttcaa gttttcttgg
     4321 aatgtgcaaa gttcttgtaa aaagagcatt taaactctcg tattcacaag gagatttaaa
     4381 ttcactcata tcgatattaa aatacttaac ataattttca ttaataactt tttgtatcat
     4441 tttaggaaat ttaatccccg ctacaaaacc aaaaagcctc gaactttctt ttgaaaaact
     4501 catttttttc cttttaaatt taaaatcact atttcactcg gagcaaaaac tctaagactt
     4561 ggcccccaaa atcctgctcc actactcaca taaagcttag ttttttctcc taaattataa
     4621 agcccatgaa caaaaccttg ctgaagttta actaaaaaca taaaaggaaa aatttgccct
     4681 ccatgcgtat gcccacttaa aacaaggtca aaatcactta aatcataaag caaagctgtt
     4741 ttaggttgat gtgtgagtaa aatactagct ttacttgtat ttaaatccac ttttattctt
     4801 gctaaatcag gagcatataa ccccttatta agtccggcta aatctccaag tccagcaata
     4861 tttataaaac ccaaatctaa attttgattg actaaaattt tcatattagc atgttttcta
     4921 agtaaatcca aaacttcatt gataccatga taatactcat gatttcccaa ggcataaaaa
     4981 gttccataag tggaattaaa atcattaagt tttgagatgt aattttttaa atctttagga
     5041 ttagtatcaa tcagatctcc tactattaca accatatcag gactttgcaa attcacttta
     5101 gtgatgagct tatctaaaaa attttcatgc aaatttttac ccaaatgtat atcagtaagc
     5161 atggcaattt ttaaatcttg tttaagattt ggtatttcaa catcaacact ctttacttca
     5221 ggtgt
//
LOCUS       DAEDTT010000104         5179 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.104, whole genome shotgun sequence.
ACCESSION   DAEDTT010000104 DAEDTT010000000
VERSION     DAEDTT010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5179
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.104"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            158..3307
                     /locus_tag="KLC54_001458"
     CDS             158..3307
                     /locus_tag="KLC54_001458"
                     /inference="COORDINATES: protein motif:HMM:NF017658.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HBD9177820.1"
                     /translation="MKKMSKHIVLSFAVSSLLFSQAYALPQGGKFTHGTSGTIHTSGN
                     TVTITGKGQNHVIQWGGGFNIGQNESVNFNGKNQNYLNIAYQKDASKIDGALNGGNNN
                     IFLVNPMGVLIGKTGTITAGKFVASTTPLSDDNVKTFLEKGASFSPAFDVSKQGNIIN
                     LGKINADNIVLIGNKVEIGVGAELAGQDGQTNAKTAHLIGNYVYVSVGKDKENKNTIK
                     IDKDGFKGTAIVEGFMQRDMTSFANDKYQFGDFGTILKSSCNGKESQNFYKAITIGGW
                     ENDKNIQEWILFSNGWNKDELNGIFKDDLTTVRLVSDIDFGYKNAVDPVGASKYAFSG
                     IFDGGNYTLKNILINAQNTDKGWNTGIFGKVEGKDGNNKAKIYNLNVDGLKFSGKTNS
                     GGAFVGQSSNADFSNIHLKNIGDLIFFDPNSKNETSGFLYGGGFVGYAKSGSSFNRIS
                     LDNFSKIALQPEGKFSSAYIDIYLGGFAGYSEGSNFSNILLNNIGGVTILGSETGGNI
                     FAGGFVGYAGDKSYFSQIDLKNIGSVQADGKTFVKHAGAGGFAGAINGTNSFEKISLI
                     NFGDIIAKRGYVWVVNGNFKVGSGGFIGLLNPLDDKILYVDFKNILLNFDQKMQIYAK
                     AGDGASSYFPDLNNWEYNFSGGFFGGLFTSKVGRANFNNIQLKFGQDVSIIAQKFRSN
                     SNEKYQGLFYGYSVKNWNDGIMKTDNVAIYYEKNYNTNQYNWYYQDIKDGFFGSAIND
                     YAYKDGRSYEFYDYNVMKDMEINKQIIAILEKDGVVSKDYNNGYVSYYDGNAKITPEV
                     PDFKDPVLSQNDFDPKLLQRILDDLMNGKYTYDFDTKTWTYTDSKGVVGKDEASEITQ
                     SLNFLNAFKDTGVEQEFINLWKNSQDQNYKNYANLYEKWTQKKTAMDKIKTGEGYFAS
                     FKEELQKYQEALAQLDKENKNYEKIKESGLVSDETLKVMYEKLLEQKEALEKQFADLS
                     GNEGFHYKLENEILNSQGFAINGSDVDGKAYIGNFNFKGKLASLPEKPNISIYEPDKQ
                     GGEDPANLLYCRLKFLKRL"
     gene            3277..3462
                     /locus_tag="KLC54_001459"
     CDS             3277..3462
                     /locus_tag="KLC54_001459"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177821.1"
                     /translation="MPPEIPEKVVEAPIKIQTEVDAKKEEDDDQVEIGEADARSSGLR
                     CIVSDNFKTMNICVNAK"
     gene            3472..5160
                     /locus_tag="KLC54_001460"
     CDS             3472..5160
                     /locus_tag="KLC54_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HBD9177822.1"
                     /translation="MRKILVVLVLLQVFSHAEELNNNKIRELIESSPEANEPQNKNLK
                     NTLKNQKSPVNFKEQNTTNITNSQTDQNEAKVFVREYVLHIDNKDLTFKKLRISEKEI
                     QDAIAEYRNQELSLQNLKDITNIIAYYCQVSGYPSATAYIPPQDLSSNKVQINIAFGT
                     LGKVIIKNNSGVRDYALESKLNKNLKGKVITTKNVENEIYKINEIYGIQTNANLQSGD
                     GYGESDVIIEVNKGDSATLTLYSNNYGTKETGRFRAGMSQSLNNIARQGDNLNFYLQD
                     SDENQIDYGINYSTFIGNLKITPFATQGHYVLGGIYRNLGFYGDSMNVGVNFSYPVFL
                     YTEYSLYLVSGFTHKKIKDYYLDGLVSNEKASNSVNLGIEGTYKGLENNVLSYTLNFT
                     YGNVENDGDSSGFNGVNLGNFGKMNLNLSNEYQFQERLTHIFQLNYQKVIGGAVLDSS
                     ESVSLGGPYGVRAYLEGEGSADNVVSGTLGIRFQTPLEGLYLTPFYDIGYSWYENKEY
                     QSENHYFMDAMGMQILYTRSANFYVKMDAARAVHRFKHDGEHRARVYVSLGKYF"
BASE COUNT         1961 a          568 c         1001 g         1649 t
ORIGIN      
        1 aaaatttgtt agaaaaaatg aaaaataata aaaataaatt taattataac aagatagaaa
       61 agttggctaa aagtacattg aaaaatgtaa attttagctt tgaagtttca gatgatgcaa
      121 aaataattta tatcaacata ctttaaagga gagtaacatg aaaaagatga gtaaacatat
      181 agttttatca tttgcggtga gttctttact cttttctcaa gcttatgctt taccacaagg
      241 aggtaaattt actcatggta caagtgggac tatccatacc tctggaaata ctgtaacgat
      301 tacaggaaaa ggacaaaatc atgttatcca atggggtggt ggttttaata taggacaaaa
      361 tgaaagtgta aattttaacg gcaaaaatca aaactaccta aacattgctt atcaaaaaga
      421 tgcttctaag atagacggag ctttaaatgg tgggaataac aatatctttt tggttaatcc
      481 tatgggagtt ttgattggca aaacaggaac tatcactgcg ggaaaatttg tagctagtac
      541 gacgccttta agtgatgata atgtcaaaac ttttttagag aaaggagcta gtttttctcc
      601 agcatttgat gtaagtaagc aaggaaatat tatcaatctt ggaaagatta atgcagataa
      661 tattgtttta ataggaaata aggttgaaat aggagtagga gcggagctag cggggcaaga
      721 tgggcaaact aatgctaaaa cagctcattt aataggaaat tatgtttatg ttagtgtagg
      781 aaaagataaa gagaataaaa atactattaa aattgataaa gatggcttca aaggcacggc
      841 tattgttgag ggatttatgc aaagggatat gacaagtttt gcaaatgata aatatcaatt
      901 tggagatttt ggtactattt taaagtcttc ttgcaatgga aaagagagtc aaaattttta
      961 taaagccatc actattggtg gttgggaaaa tgataaaaat attcaagaat ggattttatt
     1021 ttcaaatggt tggaataaag atgaattaaa tggaattttt aaagatgatt taacaactgt
     1081 aagattagtt agcgatatag attttggata taaaaatgca gtagatcctg tgggtgcaag
     1141 taaatatgcc tttagtggaa tttttgatgg tggaaattat actttaaaaa atatacttat
     1201 caatgctcaa aacacagaca aaggatggaa tactggtatt tttggtaaag ttgaaggaaa
     1261 agatggtaac aataaggcta aaatttataa tcttaatgtc gatggtttaa aatttagcgg
     1321 aaaaacaaat tctggaggag cttttgttgg gcaaagctct aacgcagatt ttagcaatat
     1381 tcatttaaaa aatattggag atttaatttt ctttgatcca aattctaaaa atgaaaccag
     1441 tggatttctt tatggtggtg gttttgtagg ttatgctaaa agcggttcta gttttaatcg
     1501 tattagttta gataattttt ctaaaatcgc actacagcca gagggtaaat ttagcagtgc
     1561 gtatattgat atttacttag gtggttttgc tggctattca gaaggtagta atttttctaa
     1621 tattttatta aacaatattg gcggagtaac gattttaggt tcggaaacag gtggtaatat
     1681 ttttgcaggt ggttttgtag gttatgctgg agataaatca tatttttctc aaattgattt
     1741 aaaaaatata ggtagtgttc aagcagatgg taaaactttt gtcaagcatg ctggcgcagg
     1801 aggttttgct ggagctataa atggaactaa ttcttttgaa aaaatttctt taataaattt
     1861 tggagatatt attgcgaaaa gaggatatgt ttgggttgtt aacggtaact ttaaagtagg
     1921 ttccggcggt tttataggac ttttaaatcc tttagatgat aaaattttat atgtcgattt
     1981 taaaaatata ttattaaact ttgatcaaaa aatgcaaatt tacgctaaag ctggagatgg
     2041 agcttcgagc tattttccag atttaaataa ctgggagtat aatttttctg gtggattttt
     2101 tgggggattg tttacatcaa aagttgggag agcaaatttt aataatattc aacttaaatt
     2161 tggacaagat gtaagtatta ttgctcaaaa gtttcgttca aattctaatg aaaaatatca
     2221 aggtttattc tatgggtact ctgtgaaaaa ttggaatgat ggaattatga aaacggataa
     2281 tgttgctatc tattatgaaa aaaattataa cactaatcaa tataattggt attatcaaga
     2341 tatcaaagat ggcttttttg ggagtgctat aaatgattat gcttacaaag atggcagatc
     2401 atatgaattt tatgattata atgtgatgaa agatatggag ataaataaac aaattatagc
     2461 tattcttgaa aaagatggag tggttagtaa ggattataac aatggatatg tttcttatta
     2521 tgatggtaat gcaaaaatta ctccagaagt gcctgatttt aaagatcccg ttttatctca
     2581 aaatgacttt gaccctaaat tgcttcaaag aattttagat gatttgatga atggaaaata
     2641 cacttatgat tttgatacca aaacttggac ttacacagat agtaagggtg tggtaggaaa
     2701 agatgaggct agtgagatca ctcaaagttt aaatttctta aatgcgttta aagatactgg
     2761 agtagaacaa gaatttataa atttgtggaa aaattctcaa gatcaaaatt ataaaaatta
     2821 cgccaatctt tatgaaaaat ggacgcaaaa gaaaactgct atggataaaa tcaaaaccgg
     2881 cgaaggttat ttcgctagtt ttaaagaaga attacaaaaa taccaagaag ccttagctca
     2941 acttgacaaa gaaaataaaa actatgaaaa aatcaaagaa tcaggcttag ttagcgatga
     3001 aacacttaaa gttatgtatg aaaaactttt agaacaaaaa gaagctcttg aaaagcagtt
     3061 tgcggatctt agtggaaatg aaggatttca ctataagctt gaaaatgaaa ttttaaattc
     3121 tcaaggtttt gctataaatg gaagtgatgt agatggtaaa gcatacattg gaaattttaa
     3181 ttttaaagga aaattagctt cattgccaga aaaaccaaat atatctatct atgagccaga
     3241 taaacaaggg ggtgaagatc cagcaaacct tctgtattgc cgcctgaaat tcctgaaaag
     3301 gttgtagaag ctcctataaa aattcaaacc gaagtagacg caaaaaaaga agaagatgat
     3361 gatcaagtag aaataggaga agcagatgct agaagtagtg gtttgcgttg tattgtaagt
     3421 gataatttta agacaatgaa tatttgtgta aatgcaaaat aggaaataaa aatgagaaaa
     3481 attttagttg ttttagtctt attgcaagta ttttcacatg ctgaagagtt aaataataat
     3541 aaaataagag agcttataga aagctctcct gaagcaaatg aaccacaaaa taaaaattta
     3601 aaaaatacat taaaaaatca aaaaagccct gtaaatttta aagagcaaaa tactacaaat
     3661 attacaaatt cacaaactga tcaaaatgaa gctaaggttt ttgtaagaga gtatgttttg
     3721 catatcgata ataaagattt gacatttaaa aaattaagaa ttagcgaaaa agaaattcaa
     3781 gatgcaatag ctgaatatcg caaccaagag ttaagcttac aaaatttaaa agatataaca
     3841 aacattatag cttattattg tcaagtaagt ggctatcctt cggcaactgc ttatatacca
     3901 ccacaagatt taagttctaa caaagtgcaa attaacatag cttttggaac tttaggaaaa
     3961 gtaatcatta aaaacaactc aggtgtgagg gattatgctt tagagagtaa attgaacaaa
     4021 aatcttaaag ggaaagttat cacaactaaa aatgtggaaa atgaaattta caaaatcaat
     4081 gaaatatacg gaatccaaac caatgctaat ttacaatcag gtgatggtta tggagaaagc
     4141 gatgttatta tagaagtaaa caaaggtgat agtgcaactt taactttata ttctaacaac
     4201 tatgggacta aagaaacagg tcgttttaga gcaggaatga gtcaaagttt aaacaatata
     4261 gcaagacaag gggataactt aaatttttat cttcaagata gcgatgaaaa tcaaatagat
     4321 tatgggatta attatagtac ttttatagga aatttaaaaa ttactccatt tgcaactcaa
     4381 ggacattatg ttcttggtgg aatttataga aatcttggtt tttatgggga ctctatgaat
     4441 gttggagtaa atttttctta tcctgtgttt ttatataccg agtattcttt atatcttgtt
     4501 tcgggtttta ctcataaaaa gattaaagat tattatcttg atggtttagt aagtaatgaa
     4561 aaagcgagca atagtgtaaa tttaggcata gaaggaactt ataaaggttt ggagaataat
     4621 gtcctaagtt ataccttaaa ttttacatat ggcaatgttg aaaacgatgg tgattcttct
     4681 ggatttaatg gagtaaattt agggaatttt ggaaaaatga atttaaattt aagcaacgaa
     4741 tatcaattcc aagaacgctt aactcacatt tttcaactca attatcaaaa agttatcggt
     4801 ggtgctgttt tagatagtag tgaatccgtg tctttaggtg gaccttatgg tgtgcgtgct
     4861 tatttagaag gcgaggggag tgcggataat gttgtttctg gcaccttagg aataagattt
     4921 caaacacctt tagaagggct ttacttgact cctttttatg atataggata ttcttggtat
     4981 gaaaataaag aatatcaaag cgaaaatcat tattttatgg atgcaatggg tatgcaaata
     5041 ctctatacaa gaagtgctaa tttttatgta aaaatggatg ctgcaagagc tgttcatcgg
     5101 tttaaacacg atggagaaca tcgagcaaga gtttatgtaa gcctaggaaa atacttttaa
     5161 ctttggggtg attggagaa
//
LOCUS       DAEDTT010000105         5081 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.105, whole genome shotgun sequence.
ACCESSION   DAEDTT010000105 DAEDTT010000000
VERSION     DAEDTT010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5081
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.105"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..743
                     /gene="proB"
                     /locus_tag="KLC54_001461"
     CDS             <1..743
                     /gene="proB"
                     /locus_tag="KLC54_001461"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HBD9177823.1"
                     /translation="VKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVTSAAIS
                     AGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKAT
                     KHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDID
                     GFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKK
                     MFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            817..1734
                     /locus_tag="KLC54_001462"
     CDS             817..1734
                     /locus_tag="KLC54_001462"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HBD9177824.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDENIIREIKDLNPDFIVVAAYGKILPKAILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAVLESLECDIKDK
                     NSSEVFELLANLAAKLILSTLLNFDKIIPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNARMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            1697..2350
                     /locus_tag="KLC54_001463"
     CDS             1697..2350
                     /locus_tag="KLC54_001463"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HBD9177825.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCEQIRNGKIDGNFAIYALEQTN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKELLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFSPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            2347..3132
                     /locus_tag="KLC54_001464"
     CDS             2347..3132
                     /locus_tag="KLC54_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HBD9177826.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            3138..3974
                     /locus_tag="KLC54_001465"
     CDS             3138..3974
                     /locus_tag="KLC54_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HBD9177827.1"
                     /translation="MGLNKDRGLSSLISDMDTVYNKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KL"
     gene            4035..4460
                     /locus_tag="KLC54_001466"
     CDS             4035..4460
                     /locus_tag="KLC54_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HBD9177828.1"
                     /translation="MFEDMHPSIMLATMAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLGVNDELEAIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAVQKKELQEHLNIHLPELKQALQNNIKKI"
     gene            4471..4983
                     /locus_tag="KLC54_001467"
     CDS             4471..4983
                     /locus_tag="KLC54_001467"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HBD9177829.1"
                     /translation="MSKLFFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVAILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVQNIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            4986..>5081
                     /locus_tag="KLC54_001468"
     CDS             4986..>5081
                     /locus_tag="KLC54_001468"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The delta subunit is part of
                     the catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit delta"
                     /protein_id="HBD9177830.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSA"
BASE COUNT         1940 a          607 c          876 g         1658 t
ORIGIN      
        1 ttgttaaagt gggttctcat gtgattagcg aagaaaacac tttaagtttt gagcgtctta
       61 aaaatttagt cgcattttta gctaaactca tggaaaaata tgaagtgatt ttagtaactt
      121 cagcggctat ttcagcagga cacaccaaac tagatatcga tagaaaaaac ctcattaata
      181 aacaagtttt agccgctatt ggacaacctt ttttaatcag tgtttataat gaacttttag
      241 ccaaatttaa caaactaggc ggacaaattt tacttacagg taaggatttt gactctagaa
      301 aagctactaa acacgcaaaa aatgctatcg atatgatgat aaatttagga attttaccta
      361 tcatcaatga aaatgacgct acagctatag aagaaattgt ctttggtgat aatgatagct
      421 taagtgctta tgctacgcat ttttttgatg cggatttgct tgtgatttta agcgatattg
      481 atggatttta tgataaaaat cctagtgaat ttagtgatgc aaagcgttta gaaaaaatca
      541 ctcatattaa agaagaatgg ctacaagcaa ccataaaaac aggtagtgag cacggaacag
      601 gtggtatagt aaccaaactt aaagcagcta aatttttact tgaacacaat aaaaaaatgt
      661 ttttagcaag tggctttgat ttaagtgtgg caaagacatt tttattagaa gataagcaaa
      721 taggtggaac tttgtttgag tgattaattt attaaattct cttttaaaat caaataagtt
      781 ataattaaaa cttttaattt cacacaaagc gaaaaaatga aaaaaattat ttttatgggt
      841 actccatctt atgcaacttg tattttaaaa gcactagtag aaaatgaaaa ttttaaactc
      901 gtagcacttt ttacccagcc tgataaagcc gtaggtagaa agcaaatttt aactccaagt
      961 gatactaagg cttttttaag tcaaaattat cctagtattc ctatttttac tccaagttct
     1021 ttaaaagatg aaaatattat aagagagatt aaggatttaa atcctgattt tatcgtggtt
     1081 gctgcctatg gaaaaatttt acctaaagcc attttggatt tagcaccttg tgtgaatttg
     1141 cacgcttctt tacttccaaa ataccgtggt gccagtccga ttcaaagtgc gattttaaat
     1201 aaagatgaaa aaagtggagt ttgcaccatg cttatggaag aagggcttga tacaggtgct
     1261 gtacttgaaa gcttagagtg tgatataaaa gataaaaatt caagtgaagt ttttgaactt
     1321 ttagcaaatt tggccgctaa gctcatcctc tctactcttt taaattttga taaaattatc
     1381 cctaaaaaac aagaggaaag tctagcaacg ctttgtagaa aaatcaaaaa agaagatggg
     1441 cttataaatt tgcaaaatgc aagagaactt tatcaaaaat atctagcttt taccccttgg
     1501 cctggagttt tcttggaaaa tggacttaaa ttcttagagc ttgaacttgt ggatgaatta
     1561 aaacaaaatg ctaggatggg tgaaatttta gaattagaaa aagaaagttt tttgcttgct
     1621 tgcaaacaag gagttttgcg tattaaaaaa cttcaagaaa gtggaaaaaa agctcttgat
     1681 ggtaggactt atttaaatgg aaaaaggctt aaaagtgaag atagtttgtg ttgaaagtat
     1741 agactcaact catctttttt tatgcgagca aatacgcaat ggaaagattg atggaaattt
     1801 tgctatttat gctttagaac aaacaaatgg agttggaagt agggaaaatt cttggcaaag
     1861 ctctaaagga aatttacatc tttctttttg tattaaagaa gaagatttgc caaaagattt
     1921 gcctttggct tctgtaagta tttattttgc ttatttactt aaagaacttt tacaagaaaa
     1981 aggttctaaa atttggctta aatggcctaa tgatttatat ttagatgata aaaaagctgg
     2041 aggggttata agtgctaaaa tttcaaattt tatcataggc ggtatgggtt taaatctgaa
     2101 attttcaccc caaaatacag ctttatgtga tatagaaatt tcgcttaaag atttagtgag
     2161 tgagtttttg caaaaagtag aaaaaaaaat tttatggaag aatattttta gcaagtatat
     2221 gttagaattt gaaaaatcaa gaaaatttag cgtccatcat gaaggtaaag ttttttcact
     2281 tgaaaattct tttttgtatg aagatggttc aattttacta ggtgataaaa gggtgtatag
     2341 tttaagatga gcgaaattat tacaatagca aatcaaaaag gtggagtagg aaagactaca
     2401 acagcagtaa atttagccgc ttctttagct gtggctgaaa aaaaagtact tttgattgat
     2461 gttgatccgc aagctaatgc gactacagga cttggtttta atcgtaataa ttatgagtat
     2521 aatatttacc atgtttttat aggaagaaaa aagctttcag atattatttt aaaaacagaa
     2581 ttgccacaac ttcatttagc tccttcaaat ataggtcttg taggtataga acaagagctt
     2641 gctaaaggtg aaaataatga gaaaaaaatg ctgcttaaaa atcaaattca agaagtgatt
     2701 gatgaatatg attttattat tattgattct ccgcctgctc ttggaagtat tactataaat
     2761 gcttttgcag caagtgatag tgtaattatc cctatacagt gtgaatttta tgcgctcgag
     2821 ggtgtagcta tggttttaaa tacaattaaa attatcaaaa aaactattaa ttctaaactc
     2881 agggttcgtg gatttttacc gacaatgtat agctctcaaa ataatctttc taaagatgtt
     2941 gtagatgatt tgaaacaaaa ttttaaaaaa caacttttta ctattaatgg aaacgaagat
     3001 gactttattg tgatccctcg caatgtaaaa cttgcagaaa gtccaagttt tggaaagcct
     3061 ataattcttt atgatattaa atcgccaggt tctgttgctt atcaaaattt ggcgtattct
     3121 atattaggat aattataatg gggttaaata aagatagggg tttaagtagt ttaatcagtg
     3181 atatggatac tgtttataat aaagaattgg gttttgataa aaatcaaagc actatgatag
     3241 aaattgatca aatttcaccc aatccatttc agccaagaaa gaattttgat caagaagctt
     3301 tagatgaact tgctaattct atcaaagaat ttggacttat tcagcctatt attgtattta
     3361 aaaaaaataa taaatttatt ttaattgctg gggaacgtcg cttaagagca gtgaaagcat
     3421 taggaaaaaa agaaattcta gcttttattg ctgatattga tgagaataag cttagagaat
     3481 tggctcttat tgaaaatata caaagagaga atttaaaccc tattgagctt gctaattctt
     3541 ataaggattt aatgcaagtt cataaaatta ctcaagagaa tttagcagaa cttattcata
     3601 agtctcgtac tcaaataaca aatactttaa gacttctgaa tttagatatt agaactcaag
     3661 agttgattgc ttctggaaaa atttctcagg gtcatgctaa agttttggtt ggtttagatc
     3721 aaaaagatga aaaaatgttg gttgatagca taataggtca aaaacttaat gttagagata
     3781 ctgaaaaaat agttaaaaaa ataaaaaata atgaaagctt acctaatcaa gaatttgaag
     3841 atgaaataaa aaaattaaaa caaatactaa atcgctttgg atttgactgc aaaaataaaa
     3901 ataatgattt tgtaattcat ttagaaaata ttgataaaat taaaaaatta atcaaaatgc
     3961 ttgaaaagct ttaaccaaaa tcttagcttt tttatggtaa aatagtcctt cgaaaattct
     4021 aaccaaggag aattatgttt gaagatatgc atccttccat aatgcttgct actatggcta
     4081 tttttttagc tatgatagtt attttaaata gtatgctgta taagccgctt ttaaaattta
     4141 tggatgaaag aaatgattct ataaaaaatg atgagaataa agtaaaagaa aattctcaag
     4201 aagttttagg tgtgaatgat gaattagaag ctattcatat taacactaga gaagaaattc
     4261 aaaaaattaa acaaagtgct atagctgctg ctaaagaaga ggcagagcaa attcttagaa
     4321 gcaagaaaga agaattagaa agaaaaatgg ccagttttta tgcagattta gccgttcaaa
     4381 aaaaagagtt gcaagaacat ttaaacatac atttacctga gcttaagcaa gctttgcaaa
     4441 ataacataaa gaaaatttaa gaggagagaa atgagtaagt tattctttat tatatttttg
     4501 ctacctttat atgcttttgg tgcatcaaat ggtagtggag aatatgatat tattccaagg
     4561 actattaatt ttctaatttt tgtggctata ttgtattatt ttgttgcaac tccatttaaa
     4621 aatttttaca aaaaccgtat tgtaaaaatt tcttctaaac ttgatgaaat tcaaaaaaaa
     4681 cttttagaaa gtaaagctaa gaaattagac acgatgaaaa aacttgaaga agctaaggca
     4741 agtgctgctg ccgctttaat tacagcaaaa aaagaagctg aaattttagt tcaaaatatt
     4801 aagaaagaga ctcaagatga gttagattta cttcaaaaac attttgagga acaaaaagat
     4861 tatgaattta gaaaaatgga aaaagaatta gtatcaaata ctttaaatga aattttttct
     4921 gatccaaata tgacattaaa acagagtgaa ataatagaac ttatgatgaa gaaggtatct
     4981 taaatatgga aaatataatt gcaagaagat atgcaaaagc gatagcttca agagctgata
     5041 taaatgattt ttatcagaat ttgtgtattt taaattctgc t
//
LOCUS       DAEDTT010000106         4941 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.106, whole genome shotgun sequence.
ACCESSION   DAEDTT010000106 DAEDTT010000000
VERSION     DAEDTT010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4941
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.106"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1107
                     /gene="dccS"
                     /locus_tag="KLC54_001469"
     CDS             <1..1107
                     /gene="dccS"
                     /locus_tag="KLC54_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HBD9177831.1"
                     /translation="YQKLYEELVVLKGATLRENHRNIVISILNSRFTPIDISAKNIAQ
                     STALKFAIFDAKKIVFSNIDFDLRKAKIELKGRGICDNKVFFLAPMSADHYFLRHASN
                     EEVNTNDGLQILIQGEDVSKDLFWIRTKVFGFAIMAFCILGLISYILVKIALKPLEDK
                     ISTLNRFIKDSTHELNTPLSVILMSIEQLEHQNLGDNAKFTRIKLAAKSLSQVYSDLV
                     FYNFPNTLETEKQKFDLRILLEERLEYFKVFFEQKKITLKLDLNQANIFAPKSQISKL
                     IDNLISNAIKYNKKGGVISIILKANFLSIADTGCGISKSNLNHIFDRYTRFNTDQGGF
                     GIGLSLVKKVCDDNDIKIICESVENQGSVFKLNW"
     gene            complement(1150..2787)
                     /gene="groL"
                     /locus_tag="KLC54_001470"
     CDS             complement(1150..2787)
                     /gene="groL"
                     /locus_tag="KLC54_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HBD9177832.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKIANLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPAMPDMSGMGGMGGMGGMM"
     gene            complement(2808..3068)
                     /gene="groES"
                     /locus_tag="KLC54_001471"
     CDS             complement(2808..3068)
                     /gene="groES"
                     /locus_tag="KLC54_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HBD9177833.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
     gene            3230..>4941
                     /locus_tag="KLC54_001472"
     CDS             3230..>4941
                     /locus_tag="KLC54_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177834.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSSLELQANIANMADFNLKGALSPFKLGFDLDYLISLNQNYAKNLG
                     LNLNQNLSFVGKIQGKASDFTLDGKGYLLGSNVLLNARMYNYSPIALNLDAQNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKFDTNYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDISKNALSTDFNLSIPSLVKLET
                     LTKTRLNGNLGVIGQTSVVNNALSSLNAQVIGLGGEVKASLKNNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKLNTNELKKIAKIELPNTIFS
                     FDAKANAKNSNIAYNALLASNLLNIKKLQGSYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLAAKAHIIGTQIQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     AGMPNYASGIVNAKINLDNIDFNNLNGKANLEAKGILNATTLSKILNKNFPNNTSYDL
                     NTKI"
BASE COUNT         1648 a          762 c          734 g         1797 t
ORIGIN      
        1 tatcaaaaat tatatgaaga attagttgtt ttaaagggtg ccactttgag agaaaatcat
       61 agaaatattg ttataagcat cttaaattct cgttttaccc ctatagatat aagtgcaaaa
      121 aatattgctc aaagcacagc gctaaaattt gctatatttg atgctaaaaa gattgttttt
      181 agtaatatag attttgattt aagaaaagca aagatagagc ttaaaggtag aggtatttgt
      241 gataataagg tttttttcct tgctcctatg agtgcagatc attatttttt aagacatgct
      301 agcaatgaag aagtaaatac taacgatggt ttgcaaattt taatacaggg tgaagatgtt
      361 agcaaagatc ttttttggat tagaacgaaa gtttttggtt ttgctattat ggctttttgc
      421 atattgggtt taatatctta tattttagta aaaattgctc taaagccttt ggaggataaa
      481 atcagcacac taaatcgttt tattaaagat tcaactcatg aactcaatac cccattaagt
      541 gttattttga tgagtataga acaacttgag catcaaaatt taggagataa tgctaaattt
      601 acaaggatta agcttgctgc aaaaagtttg tctcaagtgt attctgatct tgttttttat
      661 aatttcccta atactttaga aacagaaaaa caaaaatttg atttaagaat actacttgaa
      721 gaaagattgg aatattttaa agtatttttt gagcaaaaaa aaattacact aaagcttgat
      781 ttaaatcaag caaatatttt tgctcctaaa agtcaaattt ctaaattgat tgataatctt
      841 ataagcaatg ctattaaata caataaaaaa ggtggagtaa tttctataat tttaaaagcc
      901 aattttttaa gtattgcgga tacaggttgt ggaatttcaa agtcaaattt aaatcatatt
      961 tttgataggt atacaagatt taatactgat caaggaggat ttggtatagg gctttctttg
     1021 gtaaaaaaag tttgtgatga taatgatatt aagattattt gcgaatctgt agaaaatcaa
     1081 gggagtgttt ttaaattaaa ttggtaatca gcaaggaaaa tccttgctga taagaggttg
     1141 gagcagatat tacatcattc cgcccatgcc acccattcct cccataccgc tcatatctgg
     1201 catagcaggt ttatcttctt taatttcact aattgttgct tctgtggtta aaagcatact
     1261 agctacagaa actgcattga gtaaagctac tctttctact ttaacaggat cgataattcc
     1321 actttcaagc atattaacat attcaccttt tgcagcatca aagcctgtat tttcatcttt
     1381 agcattttct acgctattta caaccacacc tgcatcaaag cctgcatttt cagcaatttg
     1441 tcttaaaggt gctcttaaag ctctttcaac gatagctgca ccgattgctt catcgccttg
     1501 tagatcaagt ttgattttag cttttgcttt gataagcgct gcaccaccac caattactat
     1561 accttcttca actgctgctt tagtagcact taaagcatca tcaacgcgat cttttttctc
     1621 tttcatttca gtttcagttg ctgcacctac tttaataact gcaacaccgc cacttaattt
     1681 tgcaagtctt tcttgtaatt tttctctatc ataatctgaa gttgtttcag caatttgtgc
     1741 tttgatttgg tttactcttg catcgatatt tgctttttca cctgcgccat ttactatggt
     1801 tgtattgtct ttatcgatga ttacgctaga agcttgtcca agatcttgta tggtcgcact
     1861 ttcaagagtt cttccaagtt cttcagaaat cacttctccg cctgttaaaa tcgctatatc
     1921 ttcaagcata gcttttcttc tatcgccaaa acctggagct tttactgctg aaatattaag
     1981 aacaccgcga agtttattta caaccaaagt tgcaagtgct tcaccttcaa tatcttcagc
     2041 gataattaaa agtggtttgc ctgttttttg aatttgttct aaaaccggta ataaatcttt
     2101 taaatttgca atttttttat caaaaagcaa gatataaggg cttgaaagct ctactgtcat
     2161 tttttctgca ttagtgataa aataagggct taaataacct ctatcaaatt gcataccttc
     2221 aactacattt aattcatcat tgattgattt tgcctcttca acagtgataa caccatcttt
     2281 gcccactttt tccatagcat cagcgattaa atttccgatt ttttcatcag aattggctga
     2341 gattgtagca acttgtgcaa tttctttttt atcttttact tcgcgagaaa gttttttaag
     2401 ttctgctact atagcttcgc aagctttatc cataccgcgt tttacttcaa taggatttgc
     2461 acctgctgtg atatttctta aaccttcttt gaaaattgca tgagctaaaa ccgttgcagt
     2521 agttgttcca tcgcctgctt gatcagctgt tttactcgct acttctctta caagtgaagc
     2581 gcccatattt tcaagactat ctttaagctc tacttcttta gcaacactta cgccatcttt
     2641 agtaatgctt ggagcaccaa agcttttttg gattaaaaca ttgcgtcctc ttggccccat
     2701 agttactttt accgcgtcat taagtttttt aacgccctca taaagtttat ttcttgcttc
     2761 atctgaaaaa ataatttctt ttgccatttt ttatcctttt ttataaatta ttttaaaatt
     2821 cctaagatat catctaaatt taaaactaaa tattcattat tatcaagttt aatttctgtt
     2881 ccaccgtatt tagcaaacac gattttatca ccatttgcaa tatcagtgat ttctttactt
     2941 actgctacta cttcacccat taaaggcttt tctttagcat tatctggtat aattatgcct
     3001 gaggctgttg ttttagtttc ttctacgcgt ttaactagaa cacgctttcc taaaggttga
     3061 aaattcattt ttgtccatcc ttaaaaatat tgattttagc actcttttat ttagagtgat
     3121 aatatcatac tataaaaaat gaattttgtc aatactttaa attaaaatat ttataaaagt
     3181 ttagttttat agactaaagt tattttataa aataaactaa aggataaaaa tgaaaaagat
     3241 tttttatgga gttatagctt ttgttgttgt gcttttaatt gctatttata ccatactttt
     3301 cacaagtttt ggtaataata tagtggcaaa tatagcgcaa aaaaagatca aagaaagtgc
     3361 gggattagat gtaaatatca cgcattttaa tttacgtttt tcaagtcttg aattgcaagc
     3421 aaatatcgca aatatggcag attttaatct taagggagct ttgagtcctt ttaagcttgg
     3481 atttgatctt gactatctta tttctttaaa tcaaaattat gctaaaaatt taggtttaaa
     3541 tttaaatcaa aacctttctt ttgtcggtaa gattcaaggt aaagcaagtg attttacttt
     3601 agatggaaag ggttatttgt taggttcaaa tgtactttta aatgcaagaa tgtataatta
     3661 tagccctatt gctttaaatt tagatgcgca aaatcttaag atagaagaaa tacttcatct
     3721 tttatcttac cctagttacg ctaaaggttt tttaaatgct caagcaaaaa tttcagcaca
     3781 gaatttaaaa cctgatggga atatcatcat aaaatttgat acaaattata taaactatga
     3841 ggcgataaaa aaagattttt ctttagactt gcctttaaat tctaatccta aagcagaaat
     3901 tttggccaat gttaaagaag ataagattta tgctgtaagt aaaatttaca atgattatct
     3961 taacttacaa acccaaaaaa ctctttatga tattagcaag aatgctttaa gtactgattt
     4021 taatttaagt attccttctc ttgtaaagct tgaaacactt acaaaaacta gactaaatgg
     4081 taatttgggt gtgataggtc aaacaagtgt tgtaaataat gccttatcaa gtttaaatgc
     4141 tcaagttatc ggacttggtg gagaggtaaa ggcaagtttg aaaaataata aaatttttgc
     4201 agatattaat gaagcaagtt tggaaaaatt attagctctt gcaggatatg gagctttggt
     4261 ttctggaaat ttaaatgcta aacttctaaa tgcagatttg gatttttcta attttgatct
     4321 tgaagcaaaa ataaacaatg caaaacttaa caccaatgag cttaaaaaaa tagctaaaat
     4381 agagcttcca aatacaattt ttagttttga cgctaaagca aatgcaaaaa atagcaatat
     4441 tgcttacaat gctttgcttg cttcaaattt gcttaatatc aaaaaacttc aaggaagtta
     4501 taatttaaaa aatagtgagt taaatacaga tttaaatgct tttatcgatg atttatctca
     4561 gtttagtgct atagcaggac aaaaattaca aggcaaggca gatcttgctg caaaagctca
     4621 tattataggc actcaaatac aaaatttaaa tgcaaatgca aatttggcag atggtgtaat
     4681 caaggctgat tcaaatggta aaaaacttga tttaaacatt gataaacttg atttatctaa
     4741 actttttgtt atagcaggta tgccaaatta tgccagtggg attgttaatg caaaaattaa
     4801 tttagataat atcgatttta acaaccttaa tggtaaagca aatttagaag ctaaaggtat
     4861 tttaaatgct acaactttaa gtaaaatttt aaataaaaat tttccaaaca atacaagtta
     4921 tgatttaaat accaaaatta a
//
LOCUS       DAEDTT010000107         4927 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.107, whole genome shotgun sequence.
ACCESSION   DAEDTT010000107 DAEDTT010000000
VERSION     DAEDTT010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4927
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.107"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1415
                     /gene="mrdA"
                     /locus_tag="KLC54_001473"
     CDS             <1..1415
                     /gene="mrdA"
                     /locus_tag="KLC54_001473"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HBD9177835.1"
                     /translation="IPHYSELNLNKTIKIDPVVKRKYPFGKLASHIIGYVGKANLQDV
                     QENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQEVEQLSYTPAMSNDIEL
                     TIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGSFPEYDLNPFVTGISFKDWDELS
                     NSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTQYVCNGSIELGGRFFRCW
                     NRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIGFGAKTGVDLPSEFVGT
                     LPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTAQIAKGGEVIPHFLKSI
                     ENNNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQGGTSYRYLHNLDVKVA
                     AKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKPKYVVTVLLEHGGRNI
                     TSGATVAKIYQKMIELGYFK"
     gene            complement(1536..3326)
                     /locus_tag="KLC54_001474"
     CDS             complement(1536..3326)
                     /locus_tag="KLC54_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HBD9177836.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDVKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLQINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNVTSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAVKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDAKASEFRAQSKHYISDSFATIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDIAMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDYPKALVWLEKRTKAIF"
     gene            complement(3342..4897)
                     /locus_tag="KLC54_001475"
                     /pseudo
     CDS             complement(3342..4897)
                     /locus_tag="KLC54_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
BASE COUNT         1691 a          771 c          764 g         1701 t
ORIGIN      
        1 ttattccgca ttattcagag ttaaatctta ataaaacaat aaaaatagat cctgttgtaa
       61 aaagaaaata tccttttgga aaattggctt cgcatattat tgggtatgta ggtaaggcaa
      121 atttgcaaga tgttcaagaa aatgaaatag caaaactttc taactatacg ggaaaaagcg
      181 gtatagaacg ctattataat gatattttac aaggagaaaa aggaactagg gtttataagg
      241 ttaatgcctt aaatcaagaa gtagaacagc tttcttacac tcctgctatg tctaatgata
      301 tagaacttac gatagatata gagcttcagt cttatttaac ttcattgttt gaagggaatg
      361 ctggagctgc tataattatg aatgtaaatg atggatctat tttagctgca gggagtttcc
      421 ctgaatatga tcttaatcct tttgtaacag ggatttcttt taaggattgg gatgagcttt
      481 caaatagtct tgatcatcct tttacaaata aacttataaa tggatattat cctccaggtt
      541 ctgttgtaaa aatgggagta gggctttctt ttttaaattc taaaaatatt agcccgtcga
      601 ctcaatatgt ttgcaatgga agcattgagc ttggaggcag gttttttaga tgttggaatc
      661 gatcgggcca tggacctgtg gatttaaaac atgcgataaa atatagttgt gatgtttatt
      721 tttataatgg cagtttgcaa gttggaatcg atcaaataag tgaaacttta tctcgcattg
      781 gctttggagc gaaaacaggg gtagatttac ctagtgaatt tgtaggaact ttaccaagca
      841 aagaatggaa gatgcaaaga tatagacaat cttggtttca aggtgatact ttaaatacag
      901 ctataggtca aggtaatttt cttgcaacac ctatgcaaat tgctagatat acggctcaaa
      961 tcgcaaaagg tggagaggtt atacctcatt ttttaaaaag catagaaaat aataataata
     1021 caactataga aaatcaaatg gatgaaaata aaaaagaaat ttttacttta tttgaaaaga
     1081 gtcaattgcc ttatataaga gatgcaatgt atgctgttgc taatgagcaa ggaggaactt
     1141 cttatcgtta tttgcataat cttgatgtga aagttgcagc aaaaacagga actgctcagg
     1201 ttgtgggatt ttcacaaaca gataaaaata gggtcgatga aaaacaattt gagtattata
     1261 ctagatctca tgcgtggctt acttcttatg ctccttattc taagccaaaa tatgtagtta
     1321 ccgttctttt ggaacatggt gggagaaata ttacttcagg ggcaactgta gctaaaattt
     1381 atcaaaaaat gattgaactt ggatatttta aataattttt agttgtaaat tgagtttttc
     1441 aaaaaaaact tttttagcaa ttggtttaaa aaccttgtat taaacaaatt ataagtttaa
     1501 tacaaggaaa atttatctat gttaacaaaa gtatcttaaa agatggcttt tgttcttttt
     1561 tcaagccaaa ctagagcttt tggataatca cctagcttag gagaaagttt ttcaaatact
     1621 tctttgtgat aattgtttaa ccattctttt tctttttcat ctaacatttt tgtatcaata
     1681 caagatattt caaaaggaca aagagtaaca ggtttaaagt ataaaaactc tccaaaatct
     1741 ttatttttag gattttctac tttggtatga ataactaaat tttcaagtct tataccccat
     1801 ttacctactt tataaatacc tggttctatg gaggttagca taccttcttt ggcttttgtt
     1861 ttttcaagca caggggatag ataagataaa acttgtggac cttcatggac atttaaaaaa
     1921 tatcccacgc catgtcctgt gccgtgtata tagtcaattt gttctttcca taaaggtgcg
     1981 cgtgtgattg catcaagtaa gggcatagct atatcttttg gaaaaattgc actggaaatg
     2041 gcaatatgtg cttttaaaac caaggtatag tcatgaattt gttctgcatt agcctttcct
     2101 attggtacaa cgcgtgtaat atctgttgtg ccgtttttat attgtccacc agaatcaata
     2161 agtaaaagcc catctttttt aagataagca aaactctctt ttgtggcttt ataatgtgga
     2221 tatgctgcgt tttcgttaaa gcctgctata gtggcaaaac tatcacttat gtagtgcttg
     2281 ctttgtgctc taaattcgct tgctttagca tctatgtcta attcgcttat taattcttta
     2341 ttttctatcg cttcttcaag ccatgcaaaa aatttacata aagccactcc atcttctatc
     2401 atagcatctt gtatatgcgc tatttctttt gtatttttaa ctgcttttaa gtgagtgctt
     2461 ggattaattt cttgaatgat ttttacgctt ttgtctaaag aatttatgag taaagcggtc
     2521 atttttgaag gttcaataag caaatttgta tttgcaagtt tttcaagctc catgatgatt
     2581 tcatcataat ttttaagcca aaacccatct aaatttaatt ttttttcaag ttctgaattt
     2641 acttttttct gatcaacaaa aagcaaagct ttgtcttcca agattagcaa atgacttaaa
     2701 aatacaggat tataatttac atcattccct cttaaatttg taagccaagc tatatcatca
     2761 aggctggaga ttaaatgaga ggtaacattt aaatttttca ttttttgacg cactaatgct
     2821 aatttttctt ttcttgagta agagcagtat tctagttcgt gttcataaat tttttcttgt
     2881 ggtaaagtgg gacgatcttt ccaaagtgga cttatcaaat ctatatgttt taaatttgcc
     2941 ttgcaattaa tctgtaaatc tttttgcaaa gataaaggta aaagtgcaaa atcgatgcct
     3001 aaaatttgat cttcgcttaa atttttttcc aaccatttgg taaaagtatt tttaacatct
     3061 tgcttttgta aaagtatgcc actaccttct aattcctttt gtgcttgaag ccaatatctt
     3121 ccatctaccc acaaaaagcc ctcttcttgt gtgataagaa ctgttccaac agaaccctta
     3181 aagccactga taaagactct gtttttgtaa tattctggta aatattcgct caaatgagga
     3241 tccgcgctta agatgagata ggcgtcaata ttattttctt tcattaatct tctaagttct
     3301 aatactcttt gtttgtaaat actcatattt tctccttaat attaattttt tagtatttta
     3361 ttgataggtt ttttgagtat aagtaaaatt ataacagcac caagtaatat ccacatacat
     3421 tggtaaaata aatttggcaa ataagctata ttttcttcac ttgctttacc acctatgaat
     3481 ccagctaaag cattgcctaa tgcacttgct acaaaccaaa gtcccatgac ttgagattta
     3541 attaaattag gtgcaatttt tgtcattata gaaagtccca caggggaaag gcaaagctct
     3601 cctaaaacca taagcaaaaa gctactgaca agccaccaag gtgaaactaa aataatttgt
     3661 gatgaatttt ctaaattttc tcttaatgta ttagcatcgc catttaaact aattgcatga
     3721 tttgaagcta aagccattat taaaaatgcc aaagctgcac ccaaaagtcc taatgcaaat
     3781 ttaataatag atgaaatttc tttattattt ttggcacata tagtccatat aaaagcacta
     3841 aaaggtgcaa aaagtataac aaataaacct ccaagagatt gaaaccatat tgtaggaatt
     3901 tcataattta atatggtttt atccgttaat ttttctgcaa aaaaattaaa agaagtgtat
     3961 tgttgctcat atactgacca aaataacgca gccgctaaaa ataaaacaat aaaaataatt
     4021 aaatttcttt tttcttctat ttttaaagaa gtaaaagcga aaagatataa aaaataaatt
     4081 ccagcacaag ctaagatagt tagaataata tttttattaa taacttgtgc atctaatttt
     4141 ataaaaccac caaggattaa aaatattgct ccaagcaaaa caatacctga tacaatgatg
     4201 atgtaaaatg cgtttttgct ttttttgctt ggtctatccc aagtagagtc tatgccaact
     4261 ttttcatcaa attcttttaa atcaggcata gtttttaggt agaaaataat taccgctaaa
     4321 agcataccaa tcccacctgc accaaaacca aaatgccatc cgtattcttt ttgtaaaaag
     4381 ccgcaaatta aaggagctac aaaagcacca aaattaaagc acatataaaa aagagtaaaa
     4441 ccacagagtc acgccttgca tcattttttt tataaagcat tccaaccatt acagaagcac
     4501 aagttttaaa aagtcctgta cctataacca aaaaaaccat accaacaaaa attattttat
     4561 tgttaaaata agaaaaggct atgcacaaat gtccaaatgc tatagttaaa gcacctagta
     4621 aaattgctct tttttgtcct aagtaattat ccgcaagcca tccacctggc aaagcagcaa
     4681 gatataaaca acttgcaaaa attcccataa ttgcacttgc ttcttcaggt tttaagttca
     4741 ttccactttt ttcaaaactt gctatcataa aaaggtaaag caagggacga attccgtaaa
     4801 aagaaaatct ttcccaaagc tcagtgagtg aaagagataa aagtggtttt ggatgtccaa
     4861 aaaatgaagt atctaaattt tttacatttt tactcaattt atatcctttg tgtattttta
     4921 tttataa
//
LOCUS       DAEDTT010000108         4909 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.108, whole genome shotgun sequence.
ACCESSION   DAEDTT010000108 DAEDTT010000000
VERSION     DAEDTT010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4909)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4909)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4909
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.108"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            38..931
                     /locus_tag="KLC54_001476"
     CDS             38..931
                     /locus_tag="KLC54_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HBD9177837.1"
                     /translation="MILACLDFALMGACAKILSKEMSSIEIMFFRNIIGIFFIVYLLK
                     RSKAHKEGGHFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQKTAPIFITLIAFVV
                     FKENIGIKGWIGILIAFGGVLLIAQPWAHNLNHSGFDLKNSVIGITSGFLAALALTSV
                     RELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLDFILAPFVMPSLTA
                     WLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIVGIILGDNLPSTMV
                     FLGIIGIIFGGLILVKNKGKK"
     gene            928..1743
                     /gene="kdsA"
                     /locus_tag="KLC54_001477"
     CDS             928..1743
                     /gene="kdsA"
                     /locus_tag="KLC54_001477"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HBD9177838.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQAAAVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKVNIKKGQFLNPSDIKYSVKKVLQTRGIKDEGYEAAQKNGVF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            1740..2204
                     /locus_tag="KLC54_001478"
     CDS             1740..2204
                     /locus_tag="KLC54_001478"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HBD9177839.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            2204..2602
                     /gene="nusB"
                     /locus_tag="KLC54_001479"
     CDS             2204..2602
                     /gene="nusB"
                     /locus_tag="KLC54_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HBD9177840.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYHGILDNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            2599..3279
                     /gene="pyrF"
                     /locus_tag="KLC54_001480"
     CDS             2599..3279
                     /gene="pyrF"
                     /locus_tag="KLC54_001480"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HBD9177841.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKIHDIPNTMADACEEISKLGVDMINIHASAGKIAMQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKI
                     IKEHTQRNFLTLTPGIRPFGEKNDDQKRVANLTMARENLSDFIVVGRPIYKDNNPRKI
                     CEKILQEI"
     gene            3334..4227
                     /gene="msrP"
                     /locus_tag="KLC54_001481"
     CDS             3334..4227
                     /gene="msrP"
                     /locus_tag="KLC54_001481"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HBD9177842.1"
                     /translation="MIITPENLYKKRRDFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKKKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
     gene            4227..4799
                     /locus_tag="KLC54_001482"
     CDS             4227..4799
                     /locus_tag="KLC54_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HBD9177843.1"
                     /translation="MRTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFAL
                     IFLNLSLLFSLLKFKKTKNYPKILGIFAAFWAILHFLNYFIFDRNAQISRLFDDISHR
                     LLEASGFIAFLIIFLMLLSSFEIFKKLSKIRKLGYLCLVLASYHYFLTPKVPMFWEWS
                     ALIVALFYFIVRYTKTLKKLKSNNLTFIKT"
BASE COUNT         1698 a          721 c          834 g         1656 t
ORIGIN      
        1 gctaaaagta atcaagcata atttaggaat ttatttcatg attttagcat gtttggattt
       61 tgcacttatg ggagcttgtg caaaaattct tagcaaggaa atgagttcta tagaaattat
      121 gttttttaga aatatcatag gaattttttt catagtctat cttttaaaac gatctaaggc
      181 acataaagaa gggggacatt tttggctctt ggtatttcgt ggagtagtag gcacgctttc
      241 actatatatg tttttctata atgtttcaaa tattacacta ggcggagctt ttgcttttca
      301 aaaaactgct cctattttta ttactttaat agcttttgtt gtttttaaag aaaatattgg
      361 catcaaaggc tggataggaa ttttaatagc atttggtgga gtgcttttaa ttgctcagcc
      421 ttgggctcat aatttaaatc attcaggctt tgatttaaaa aattcagtta taggtatcac
      481 gagtggattt ttagctgctt tagctcttac aagtgtaaga gaacttagaa aatcttacac
      541 tacagaacaa attgcctttt cttttatcct tttaggaacc ttaatgcctt taatttctat
      601 gatcagtgct gaattttttg aaccacagca tcttgattct ttacatttag atttcattct
      661 agcacctttt gtgatgccaa gtcttacagc ttggcttatc attgccatta tgggaacttt
      721 aggcaccatt tatcaaattc atgtcactaa agcttatggt atcgctaaac aagcaggagt
      781 ggttgccgga gttagttatc ttgatgtagt atttagcatg atagttggga taattttagg
      841 agataattta ccaagtacta tggttttttt aggtataata ggcattattt ttggtggatt
      901 aattttagtt aagaacaaag gaaaaaaatg aaaaaaatga tactcattgc tggtccttgt
      961 gtgatagaaa gcaaagattt gatttttaaa gttgccgaac aattaaaaaa ttttaatgaa
     1021 aacccaaata tagaatttta tttcaaatca agttttgata aggccaatcg cacaagtatt
     1081 aattcttttc gaggtcctgg tcttgaagaa ggattaaaaa ttttacaaag cgtaaaagat
     1141 gaatttggta tgaaaatctt aaccgatata cacgaaagca atcaagcagc agccgtaagt
     1201 gaagtagctg atgtcttgca aattcctgct tttttatgtc gtcaaaccga tttacttgta
     1261 gccgcagcaa aaactaaggc aaaagttaat atcaaaaaag ggcaattttt aaacccaagc
     1321 gatatcaaat acagtgttaa aaaagttcta caaacccgtg gcataaaaga tgaaggctat
     1381 gaagctgctc aaaaaaatgg tgtttttgta gctgaaagag gagctagctt tggctatgga
     1441 aatctagtag tagatatgcg ttctttagtt atcatgcgtg aatttgctcc agttattttt
     1501 gatgctaccc atagtgtaca aatgccaggg gctgcaggtg gaagtagcgg ggggaaaagc
     1561 gaatttgtag aacctttagc aagagcggca gcagccgtag gcatagatgg ctttttcttt
     1621 gaaacacata ttaatccttg cgaggcttta tgcgatggac ctaatatgct taatcttaca
     1681 cgccttaaaa attgcgttaa tacattacta gaaatacaaa atatcataaa ggaaaacaaa
     1741 tgaatattat tgaaggaaaa ttaaatttag actcaaatac aaaaattgct atcattaatg
     1801 caagatttaa tcatatcatc acagatcgcc ttgtagaagg agcaaaagat gcttttttaa
     1861 gacacggagg caaagaggaa aatctaagcc ttatacttgt tcctggtgct tttgagcttc
     1921 cgtatgcatt aaaaaaagct atagaaagca aaaaatttga tgcaatttgt tgcgtaggtg
     1981 cagtaattcg tggctcaact ccgcattttg actatgtttc agcagaaacc accaaaggca
     2041 tagccaatgt gagtttaaat cataatatcc ctgtaagctt tggtgtttta actacagata
     2101 caatagaaca agccatagaa agagctggaa gcaaggcagg taataaaggc tttgaagcta
     2161 tgacaactgt aatcgagatg ttaaatttaa gcaaggagct ttaatggcaa cgcgtcatca
     2221 agttcgccaa agcgtcatct ccttgcttta tgcttttgaa ttaaattctc aaaacaacgt
     2281 ttttgtagat gaaattttag atgaaaaaaa aatacgcaat gaacaaaaaa attttacctt
     2341 aaatttatat catggaattt tagacaattt aaacaatatt gatgaaacct taaattcatt
     2401 tctaaatgat aatcaaatta cagctttagg acatgtagaa agagctatac taagacttgg
     2461 ggcttatgag ttacttttta ccgatactcc tagcgccatt gttatcaatg aggctataga
     2521 acttgccaaa gaacttgcta atgacaattc tccaaaattt ataaatggag ttttagatgc
     2581 cttgataaag gctaaaaaat gaagctttgt gtcgcacttg atctttctac aaaagaagaa
     2641 tgcttgcaac ttgctaaaga attaaaaaat ttagacatat ggttaaaagt aggtttaaga
     2701 gcatatttaa gagatggttt taaattcata gaagaactta aaaaagttga tgattttaaa
     2761 atatttcttg atcttaaaat tcatgatatt cccaacacta tggcagatgc ttgcgaagaa
     2821 atatcaaaac ttggtgttga tatgatcaat atccacgcaa gtgctggaaa aatagctatg
     2881 caagaagtta tgacacggct tagcaaattt tcaaaaagac ctttagtttt agcagtttct
     2941 gctcttacga gttttgatga agaaaatttc tttagtattt atagacaaaa aatcgaagaa
     3001 gctgtaatta atttttcaaa aatatcctat gaaaatggac ttgatggtat ggtatgctct
     3061 gtttttgaaa gtaaaatcat caaagaacac actcaaagaa atttcctaac tctcactcca
     3121 ggaattcgtc catttggaga gaaaaatgat gatcaaaaac gcgtcgctaa tttaacaatg
     3181 gctagagaaa atttaagcga ttttatagta gttggacgcc ctatttataa agataataac
     3241 cctagaaaaa tttgcgaaaa aattctacaa gaaatttaat aatcattatc cttgttatgt
     3301 tttaataata aaaattttta acaaggaaaa attatgatta taacccctga gaatttatat
     3361 aaaaaaagaa gagatttttt aaaacttgga gcaggtgctt taataagttc aagcgtgctt
     3421 gcttctaaat tatctgcttt aaatttcaca agcgatacta atccaaacaa acttgaaatc
     3481 agcgatgaag aacttgctac aaattatgtc aatttttatg aattttcaac agataaaaaa
     3541 aaggctgtat cattggcaca aaatttcaat actcaaaatt ggaaaatcga tatcagtgga
     3601 gaaatagaaa aacctttaac tttaagcatg gaagatattt taaaattccc actagaagaa
     3661 agaatttatc gttttcgctg tgttgaaact tggtctatgg tggtaccttg ggtaggcttt
     3721 gaattgcgtc gtttgattga aatggcaaaa cctacaagcg aggcaaaatt tgttaaattc
     3781 accactcttt tagataagag ccaatttccc gatcaagacg ctttatttcc aactatagac
     3841 tatccttatg tagaaggact tcgcatggat gaagctatgc atcctcttac cttgcttgca
     3901 gtaggaatgt ataaaaaagc cttaaagcct caaaatggtg ctccaatacg ccttgttgtt
     3961 ccttggaaat atggctttaa aagtattaaa tccatagtta aaatagaatt taccaaagaa
     4021 cagcctaaat ccacttggga aagttacgct ccaagtgaat atggttttta tgctaatgtc
     4081 aatcctaatg tttctcatcc tagatggtct caagctaacg agagggcttt aggagacttc
     4141 tttaccaaac ctactttaat gtttaatggc tatgaaaaag aagtggcaag tttatataaa
     4201 aacatggact tgaaagtgaa tttttaatgc ggacaaaata ctttaaattt cttgcttatt
     4261 ttagctttat cataagttta atatatggct tttatcatat cataaaagcc tttgattttg
     4321 taaaagaagc ctatatttac accggaatat ttgctttaat ctttttaaat ttaagtcttt
     4381 tattttcttt acttaaattt aaaaaaacaa aaaattatcc taaaatttta ggtatttttg
     4441 cagctttttg ggcgatttta cactttttaa attattttat ttttgataga aatgctcaaa
     4501 tttcaaggct tttcgatgat atttcacatc gtttattaga agcaagtgga tttatcgcat
     4561 ttttaatcat atttttaatg cttttaagtt cttttgaaat ctttaaaaaa cttagtaaaa
     4621 tcagaaaact aggatattta tgcttagttt tggcaagtta tcattatttt ttaaccccaa
     4681 aagttcctat gttttgggaa tggagtgctt taattgtagc tttgttttat tttatagttc
     4741 gctatacaaa aacattaaaa aagttaaaat ccaacaatct tacttttatc aaaacttgaa
     4801 tttaattctt tttgtatgct ttctataaaa tcttgcattt taaaaacccc atcttgtgat
     4861 acagctactt tcaaagctgt attctttact accattaaaa tttgtgctc
//
LOCUS       DAEDTT010000109         4794 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.109, whole genome shotgun sequence.
ACCESSION   DAEDTT010000109 DAEDTT010000000
VERSION     DAEDTT010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4794)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4794)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4794
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.109"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..300)
                     /locus_tag="KLC54_001483"
     CDS             complement(<1..300)
                     /locus_tag="KLC54_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD9177844.1"
                     /translation="MLYKRKNIKFKNFVDLHKNLSLSKLFDFYSVFEGFEKLNILNFE
                     DDIFTNIERILLDDYLKIKSYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALS"
     gene            336..1610
                     /locus_tag="KLC54_001484"
     CDS             336..1610
                     /locus_tag="KLC54_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HBD9177845.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEISKILPTY
                     ANTHSDSSLNSFKTQQTYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEA
                     LEEGGTPGILQLIRASLAFKIKDSIGIKNIEKKEEILKDYFFEKLKTIPNLILYAKNL
                     KTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKP
                     GWLRISLHYTHEKEDIDYFFNALNKTIVKLSH"
     gene            complement(1607..2431)
                     /gene="purU"
                     /locus_tag="KLC54_001485"
     CDS             complement(1607..2431)
                     /gene="purU"
                     /locus_tag="KLC54_001485"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HBD9177846.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVLPVNHEFTWQDMQQAGRNIEKDVLSKALDLAFEDRIFIHNNKTIIF"
     gene            complement(2428..3546)
                     /locus_tag="KLC54_001486"
     CDS             complement(2428..3546)
                     /locus_tag="KLC54_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HBD9177847.1"
                     /translation="MQISKISLKNNSDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKLKDFEKIMQKLGAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGAGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELGLEKQVFGFESVFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     KKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLVK"
     gene            complement(3515..4006)
                     /locus_tag="KLC54_001487"
     CDS             complement(3515..4006)
                     /locus_tag="KLC54_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HBD9177848.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQSEILNP
                     SVITEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(4003..4251)
                     /locus_tag="KLC54_001488"
     CDS             complement(4003..4251)
                     /locus_tag="KLC54_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HBD9177849.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPDNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            complement(4330..4503)
                     /gene="tatA2"
                     /locus_tag="KLC54_001489"
     CDS             complement(4330..4503)
                     /gene="tatA2"
                     /locus_tag="KLC54_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HBD9177850.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKAQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
     gene            complement(4513..>4794)
                     /locus_tag="KLC54_001490"
     CDS             complement(4513..>4794)
                     /locus_tag="KLC54_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HBD9177851.1"
                     /translation="KKAISEIPFCSVELCENEKIIVVIESENLEDELNSYKMLEKLPN
                     IISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENIRYYGSVFNQFS"
BASE COUNT         1655 a          801 c          561 g         1777 t
ORIGIN      
        1 agataaagct ttaaaatgtt gaatttttct attgatagaa aaacgcttac gattgttttt
       61 agctagcaaa gtaagagcgt aagaacttgt ttcatccaag gcaaaataac ttttaatttt
      121 tagataatca tcaagcaaaa ttcgctctat atttgtaaat atatcgtctt caaaatttaa
      181 aatgtttaat ttttcaaaac cttcaaacac actataaaaa tcaaaaagct tgcttaaaga
      241 caaattctta tgcaaatcta caaagttctt aaattttata tttttccttt tataaagcat
      301 ttttatagta taattttagc aaatttttat aaggattgta tttgcaaatt tcagatttaa
      361 aaaaagaatt gatcttaaaa aaaggtattt tgcattttga cttcacagca agtgctttag
      421 ctctaaaatg cgtagaaaaa gaaatttcaa aaattctccc aacctatgca aatacacatt
      481 ctgatagctc tttaaattct tttaaaactc aacaaactta cgaacaagca agaaaagata
      541 taaaaaaaag tttatcatta gatgaaaatt ttgcccttat agcttgcgga acaggatcaa
      601 gcagtgctat taaaaaattt caagaattga tcggcattta cattccccct cttgtaaaag
      661 aaagatattt tacgcaaatc gataaaaata ccttaccttt agttatcgta gggccttatg
      721 agcatcattc taatgaactt tcatttcgag aaggcttatg tgaatgtatt agaattccct
      781 tagataaaaa tggagaaatt gattttgatt ttctagaaaa aactttacaa aaaaataaaa
      841 aaagaaaaat aatcgctagc ttttctttag cttcaaatgt tactgggata ttaagtgatt
      901 acaaacgcat ttctgaaatg gttcgtaaat ttaaagggat agttgctttt gatgcatcta
      961 gtttcattcc ctataaaaac atatcttgtc aatactatga tgcgttgttt ataagttctc
     1021 ataaattaat cggtggtatt ggcggttctg gacttttagc catcaaaaaa gatctttgtg
     1081 gaaacaagcc tagctttgca gcaggtggaa ctgtgggcta tgtttctcgc acttcacaat
     1141 gctacctttg taatgaagaa gctttagaag aaggaggaac acctggaatt ttacaactca
     1201 ttcgcgctag cttagctttt aaaatcaaag attctatagg gattaaaaat atagaaaaaa
     1261 aagaagaaat tttaaaagat tatttttttg aaaaactaaa aactatacct aatttaattt
     1321 tatatgcaaa gaatttaaaa acccgattgc ctatttttgc tttcaatatc aaaggaattt
     1381 ctccttttga tatcgcttac gaacttagta aaaaatacca catagaaaca cgcgctggat
     1441 gtgcttgcgc tgggccttat ggtcatgatt tgctaggctt aaaagacaat caaaaactta
     1501 aaacaaaacc aggttggtta agaataagct tgcattatac acatgaaaaa gaggatattg
     1561 attatttttt taatgcttta aataaaacta tagtaaaatt atcgcattaa aatattatag
     1621 ttttattatt atgtataaaa attctatctt caaaagccaa atcaagtgct tttgaaagaa
     1681 catctttttc tatatttcta cctgcttgtt gcatatcttg ccaagtaaat tcatggttta
     1741 caggtaaaac agcttgagtg ataataggac cttcatcaag attattattt acaaaatgtg
     1801 ccgtagctcc aattatttta acccctcttt caaaggcttg tttataagga tttgctccta
     1861 taaatgcagg taagaaagaa tggtgaatat ttataatctt accttcaaaa tgcctaacaa
     1921 aatcaggaga taaaattcgc atatattttg ccaaaaccaa ataatcaaat ttatattgtt
     1981 caagacattt taaaatctga ttttcttgct cttttcgatc taaattttca gcgctgataa
     2041 aatgataagg aatttcaaat ttctcaacta aatcctttaa agagttgtga tttgaaatca
     2101 cagctttgat atttgcttca agttcgttac tataatgctt tattagcaaa tctcccaaac
     2161 aatgactttc tttagtagca aaaacaacaa tatctttttt tctcttctcg caaagctcta
     2221 tcaaggcttc ttgtccaagc atagcctcaa gcgttcctat aaaagcttct ttatcaaact
     2281 caccttctaa aagagcacga aaaaaaaaca ttccttcgcc tacaaattca tcgtttttta
     2341 ctatattgat atgatattta aaaataacat cagaaattct ataaattaaa cctttttgat
     2401 ctttggtgca aatttttaat acagaaatca tttaactaaa ccttttatat attcttttaa
     2461 ttcattctct cttgcttctt gaagctttag accaagaatt ttaccacaaa atccagcatt
     2521 tatgaaatct tttgctaaaa ttttactttc aaacttattc tcataaagcc ctaatctttt
     2581 agcttgctca atacgctttt tactccaaag tccaagccat tccttcaatg gcatttcaaa
     2641 agcaattttt gctagttcaa aatcacttat atcatcaaga taaaaagctt gatttgcgta
     2701 ttttaggtat tcttttttaa gtttagttct tttaaaaaat atatcttttt ctaaattaaa
     2761 aaaattcaaa tacaaataca agaataaagc atcgcttttt acaaattctc tactttgtct
     2821 gagtaaattt tgaaattcca aactcttaaa aacactctca aagccgaaaa cctgtttctc
     2881 taagccaagt tcttgtaaat atctatagcc gacatcaagt ctaggacttt taaagaattt
     2941 ataaagctcc gcattgatcc tatctttact aagatcagtt atatccatac tttgcatcaa
     3001 tttcaagctt tcactagtta tcttaaagtt aaaccttgag gcaaatacta ctgctcttaa
     3061 tacccttaaa ctatcctctt gaaagctttg tttgtcaata tgccttaaaa agcctgctcc
     3121 tagatctttt aatcctccgt aaaaatctaa aaactcatcg ttaaaaagat taatcatcat
     3181 agaatttatg gtaaaatcgc gtcttttggc gccaagtttt tcatcattgc aaatttgaac
     3241 ttcaaaacct ttatgtccat agcttatttt gttttcggtt ctagcaagag ctaaatcata
     3301 atttttaaac ttatacacaa aaaaactttt tccaaagcct tgtgcgccca atttttgcat
     3361 aatcttttca aaatctttaa gttttatatc ataaagctct atatcatagt cacaaatttt
     3421 taaacctaaa aacaaatccc taacactacc tccaaccaaa tacgctcgtt tggtataagg
     3481 ctttaaaaac tcagcaataa actgtaaatc ggaattattt tttaagctta tcttcgatat
     3541 ttgcaagtaa aaactctaaa aaatttatgg tcaagtttaa cctattttca agatcatctt
     3601 tttttatact atttaaacct tcaaaaagaa ctaaaattct ctctctaaga tgttttaaaa
     3661 aaatatcctc attaagcgtt tgaacctctg ttataacact aggatttaaa atttcacttt
     3721 gtaaaaaagg ctcttctttt ttaaactctt tattttcctg agtagaaatt tcaatattat
     3781 tttgtatttt ttgctcttct tcaaattttg ccatagaaat tttatcttct aagtcttgcg
     3841 gagtatcgag ctcttcgcat acaaactcca taggcggtaa ttcatctttt atttcagttt
     3901 ttctatttaa ttcttgttct tttaaaattt cattttgtct tctttgctct tccatgatag
     3961 agctaacttc gctaatggtt tttttagcta aatcttccaa attcatattt ttatcaacca
     4021 ccttttaaat tcattaattt cttcatcgct tttcatatta ataaaaaaat ccaacatttg
     4081 agtgtttaaa tctttatgct tggatctaaa accactaaga cgacgaaccg catcgatagc
     4141 gttttggtta tctggatctt cttttaagat atttttataa atttctaaag cttcgtcttt
     4201 taacccttga gcctcataga tagaagcttc agtgactgta tttttcatca ctgtttccta
     4261 aaatttttct ttaattctag caaaaagctt tttaatttat ctttaagaaa ataagatgtt
     4321 ttttaatgtc tattttgttt taaacaattt ttctatatat tctttttttt ctttctctaa
     4381 gctagaattt aattcttttt gttctttttt aacttgcgct tttaaatctt gatttttaaa
     4441 atacacataa tcaattccaa aaataacacc aattataata agcaatggga ttaaaaatac
     4501 catctttaca ctttaagaaa attgattaaa cacactacca tagtagcgaa tattctcagc
     4561 attttcattt ttttctatcg tttctattgc gccactattg attgcttttt ggatatcatc
     4621 atttaaatct tgataagaaa aaaccatatt aatactgata atatttggca atttctcaag
     4681 cattttataa gagtttaact catcttctaa attttcactt tcaatcacaa ctataatctt
     4741 ttcattttca caaagttcta cagaacaaaa aggaatttca gatatagcct tttt
//
LOCUS       DAEDTT010000110         4433 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.110, whole genome shotgun sequence.
ACCESSION   DAEDTT010000110 DAEDTT010000000
VERSION     DAEDTT010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4433
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.110"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..390)
                     /locus_tag="KLC54_001491"
     CDS             complement(<1..390)
                     /locus_tag="KLC54_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177852.1"
                     /translation="MKHCLALCFIFFLCACSVKNQNFSSQSLMVLIASPMIKINDAAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKKVFNQKFFKNVYYDDILSDIL
                     KANALWQGKNLEKTDCGFEQNLKAKNYE"
     gene            complement(399..890)
                     /locus_tag="KLC54_001492"
     CDS             complement(399..890)
                     /locus_tag="KLC54_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HBD9177853.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKAIKDSKLKVNSSIRGEEIRVVAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(880..1815)
                     /locus_tag="KLC54_001493"
     CDS             complement(880..1815)
                     /locus_tag="KLC54_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HBD9177854.1"
                     /translation="MKIVCLDAATLGDYDLSIFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGINNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQIPYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGSIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKHLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(1818..2987)
                     /locus_tag="KLC54_001494"
     CDS             complement(1818..2987)
                     /locus_tag="KLC54_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HBD9177855.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVIDNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLSHIANEAGFQTNFSFVDEVEFS
                     EEGVFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKVIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(2997..3602)
                     /locus_tag="KLC54_001495"
     CDS             complement(2997..3602)
                     /locus_tag="KLC54_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HBD9177856.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSTSSAKKSGFFGGGSKAASSSSSFGS"
     gene            complement(3725..3937)
                     /locus_tag="KLC54_001496"
     CDS             complement(3725..3937)
                     /locus_tag="KLC54_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HBD9177857.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            4097..>4433
                     /locus_tag="KLC54_001497"
     CDS             4097..>4433
                     /locus_tag="KLC54_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HBD9177858.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFALPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNI"
BASE COUNT         1451 a          827 c          494 g         1661 t
ORIGIN      
        1 ttcataattt tttgctttta aattttgctc aaaaccacaa tcagtttttt ctaaattttt
       61 accctgccat aaagcatttg cctttaaaat atcacttaaa atatcatcat aatatacatt
      121 tttaaaaaat ttttgattaa acactttttt atcataacac actgcattga tacaaatttt
      181 atctttgatt ttgagttcaa aaaaagcttg ccctagttta taaacttcca aatttaaagc
      241 attattttct ttttttaaaa aagctgcgtc attgattttt atcataggag aagcaatcaa
      301 aaccatcaag ctttgacttg aaaaattttg atttttcaca ctacaagcac aaagaaaaaa
      361 aataaaacac agagctaaac aatgcttcaa atttgacctt atttaagatt tttaaaactg
      421 atatttaact ctaaatcaag ctcttttaca agcttcatta cagcttgtaa atcatcaatt
      481 tgttttgcta caacacgaat ttcttcacca cgaatcgaag aattaacttt aagtttgcta
      541 tctttgatag ctttattgat ttttttggca ttttcactat caatagcatc gtttgctttc
      601 aaatttaaac gaaacattgc tccactttca cgagaaagct ctttaatagc attaggatta
      661 attcctcttt tgataagttt agaaatcact atatctttta aaacatcaag ctttccttca
      721 ctagaagaac tgagtttaaa aatactctct ttttcgctta aatcaatctc acacttaatt
      781 ccttttaagt cataacgact atcaagttct tttttagctt gttcaaaagc attttttaac
      841 tcttgtttat ccaaagctgc tgaaatatca aaactatgtt cacttgccat tttctatcca
      901 ttcttttaaa ttattataaa ctatatccat taaagcattt aaagcctcct tgctcgccca
      961 cgcaacatga ggagtgataa taagattttc tttattttta atgcttaaaa gtggatgatt
     1021 tttcatcata ggttcaattt ctaaaacatc aagccctaca cgaatatttt tttcatctat
     1081 gattttagct aaatcatttt cattgacaat cccacctctt cctacattaa tcaaaatcgc
     1141 attatctttt aaatgcttta attcttcaaa ggcgagtaaa tttttggttt tttcatttaa
     1201 aggtgcgtgg atacttataa tatcgcaagt ttttaataaa tcttttaatt ccaaatgtac
     1261 aaaatctgcg tttttattag ctccactcgt agaataataa taaatttcgg ctccaaaagc
     1321 ctttgaaatt tttgccactt ctttacctat gcttcctaaa cctataatac catgtttttt
     1381 accacttaag gtgtttaaaa ttctactata atctgtaaaa ataggacttt cacaccattt
     1441 accctctttg ctccatttgt cataataagg tatttgattt aaaaaagcaa acataaacgc
     1501 aaaagtatgt tgcaccacac tcatagtaga atacccagca gcatttttta caataatacc
     1561 tttttcttta gcatactcaa tatcgatatt attaatccct gttgcagttt ctaaaatgag
     1621 ttttaaattt ttacaagcat caatcacatc tttatcaatt acaaccttgt ttgtcatggc
     1681 gacattagca tcttttaaac gctctatggt ttgctcttta tttgttgtag tataaatttg
     1741 caaagaacca aatttttcaa aaatacttaa atcataatcc cctaaagttg ccgcatctaa
     1801 acaaacaatt ttcatttcta atcctttata atatgtccta caaatttaga ataattatca
     1861 agcacaagtc ctccttttct aaatcctaag ccacaccctt cataagcaaa gaaaacacct
     1921 gcttgatagt attcgttttc acatgaatta aactctacat attcttgata aataacctta
     1981 ttattcccat aaggacctac attctcatgt aaagtttttc catctttaat tatactgata
     2041 tttgcgcctt ctctaccaaa aacaggtttt ttaacatagt ttttaccttc caaaggagta
     2101 tcttttgttt ctaaaagtaa tggatgattt ggataaagtt cccatagaat ttttaaaatt
     2161 cccttagatt gaaataaaag cgtataagca ggatttaaaa taattgctct ttgattacgc
     2221 ataatttgag ttaaaagcat ggcaagttca ccctcttcta tggctatatc ttcccaagga
     2281 ataagcttaa accaatactc ataattttca ccctctttaa aaacaccctc ttcactaaat
     2341 tccacctcat ctacaaagga aaaattagtt tgaaaacctg cttcattggc tatatgagaa
     2401 agcaattttg tagtgatttc ttcttcttta cttcctgcaa cacttgaaaa aagaattttc
     2461 catccttgat aatgctcttc aaacccttca acactttcat caagggtaat aagtctttta
     2521 aaattatcca tcaaactttc ataaatgctg ttaaattgtg cactttcatc cattccattt
     2581 tgttttaaaa gcgcccattg taaaatcgca ctttcaaaaa gagcagtagg ggtatcagca
     2641 ttaaattcta taagttttat aggcttgcca tcaagtccac ccgctaaatc aaaacgccca
     2701 tataaatgcc aatgcacttc attttcccaa ctcatcttaa tcgcatcaat aagattaaaa
     2761 ggaattccaa gctcatcaaa acgatcatta tcaatcactt cttgcgctgc agcaataaac
     2821 atatcataaa gttcatttac tgcttcataa taagcattag cttcgctttc tttaacacaa
     2881 actaacttat tgctaatata atcacttcca tcttcatctg tatgccaaga aaaacctata
     2941 ttttctaaat aatctttttg aagtttatct acttgtagta attgcattat ttatccttaa
     3001 gagccaaaag aggaactaga acttgcagct ttagagcctc caccaaaaaa acctgatttt
     3061 ttagcacttg aagtagaact tgttgtgcct gctttattaa aactattgac acttctttga
     3121 taagcacttt gatttgaaaa agcaccgcgt tgttgattag caaaattttg attattgaaa
     3181 agttttgaac ctatccaact tcccaaaata gcacctgcag cacttgcgag taaagtttct
     3241 cctaaactca atcccccact actgatttgc ccattatctt tagttaaatt tgaagttcca
     3301 ttgtcaattt tagctgcttc ttctttaatc aaagcatcca tttcttcttt ggataaaatt
     3361 ctttctgtac cattaagatc ttttaaaact acccttgttt catcacttgg atattgatct
     3421 ttgattttat actgccctgg agctgtttct tcgataatta caaaagctcc ttgagcatta
     3481 gctgcttgat ttaaagtatc tgcattgtca ttattacttc cacaacctgc taaagcacct
     3541 ccagcaacag ctgctaaacc acctatcata ccaatttgaa tgattttttt gatttttttc
     3601 atagagttta tcctaaaaac agaaaattta aatttagaaa ttttaacaaa aaataataaa
     3661 tactttttaa tttaatacca aatgaagttc gtagatataa aaaaagccct ttcgggcttt
     3721 tgggttagag tcttgactcg tagcgtctaa gcatataaag tcttttaagc atttttttgc
     3781 gtgctgaaat tttttgtttt ttgcgaattt cagtcatagg ctcgaaaaat cttcttgctc
     3841 ttacttcagt tacaactaga tttctatcta cttgtttttt gaatttacga tacgcttcat
     3901 caaaagactc gttaggatgc accttgattc ctggcacagt cctcaccacc tttctgtgta
     3961 aatttttgtt gtgaaatata attataaaac acttcttatt aattctaact tagaaagcat
     4021 ttaaaaattg ttttagtttt tatcggttat aatccttaat tacaaagtgc taaaaaatta
     4081 taattaaggt ctaaaaatgc aaggacacat tacaaactat acaaaaaaac gatattttgt
     4141 atatttaatt gcaagtatta tcatatttgc cctacctttc ataagaatta atgagaatca
     4201 tttttttctt ttaagttttg atcattctaa attaaaccta ttttttattt ctttttcaac
     4261 acaagaattt tatctcatgc cttttgttct tatatttctt tttttattta ttttttttat
     4321 tacaacttta ggtggaagaa tttggtgtgc ttggagttgt ccacaaacga tttttagagt
     4381 tatatataga gatatcatac aaactaaatt tcttaaaatt cgcaaaaata tca
//
LOCUS       DAEDTT010000111         4387 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.111, whole genome shotgun sequence.
ACCESSION   DAEDTT010000111 DAEDTT010000000
VERSION     DAEDTT010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4387)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4387)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4387
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.111"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..303
                     /locus_tag="KLC54_001498"
     CDS             <1..303
                     /locus_tag="KLC54_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HBD9177859.1"
                     /translation="NQIIGNINFYIRENEIDFGFYANPFSKILGIGRILEQIGIYYAF
                     KIINVPILSLEVFSNNTQVINLHRKFGFSIVQEFFIKKQKILKMSLKQSDCKALLS"
     gene            complement(268..1014)
                     /gene="hisF"
                     /locus_tag="KLC54_001499"
     CDS             complement(268..1014)
                     /gene="hisF"
                     /locus_tag="KLC54_001499"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HBD9177860.1"
                     /translation="MLKTRIIPCVLLKNSQLVKSIEFKNFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDKDFISKAANRFGSQCIVCSIDVKRKGEQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGKAKGYDLELLKIFQNKLKIPLIVNGGLGKPSDGVKALNLGVDAL
                     AGAYIFHFSKYTPKDVKEELAKQGFAVRLL"
     gene            complement(1015..1620)
                     /gene="hisH"
                     /locus_tag="KLC54_001500"
     CDS             complement(1015..1620)
                     /gene="hisH"
                     /locus_tag="KLC54_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HBD9177861.1"
                     /translation="MIALIDYKTGNLNSVAKAFEKIGATNFIAKNPKDLQKADKLLLP
                     GVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQEPLYQDIEDKSDFYFVHSFYVRCKDEFVSA
                     KAQYGHKFVASLQKDHIFATQFHPEKSQNLGLKLLENFVRL"
     gene            complement(1617..2753)
                     /gene="pseA"
                     /locus_tag="KLC54_001501"
     CDS             complement(1617..2753)
                     /gene="pseA"
                     /locus_tag="KLC54_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HBD9177862.1"
                     /translation="MKFCKKCVMPDTKPDLHFDEEGICDACRSQEAKNQKINWQEREK
                     EFFELVKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILDREWLEEFGGLLGNRISDMIGVEGITQKDVYFYTY
                     PINEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSG
                     FSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK"
     gene            2913..3944
                     /gene="pseI"
                     /locus_tag="KLC54_001502"
     CDS             2913..3944
                     /gene="pseI"
                     /locus_tag="KLC54_001502"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HBD9177863.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALQSIKAAKEAGADAI
                     KIQTYTPDSMTLNSNKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDLEFLKRFDPIAYKIASFEANDENFVRLIAKEKKPTVVSTGIATEEELF
                     KICEIFKEEKNPDLIFLKCTSAYPTAIEDMNLKGIVSLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARMIEKHFMLDKNIESEDSKFSLDFDEFKAMVDAVRQAESALGDGKLDLDE
                     KALKNRVFARSLYASKDIKKGEMFSEENVKSVRPSFGLHPKFYQELLEKKATKDIKFG
                     DALKESDFR"
     gene            3941..>4387
                     /locus_tag="KLC54_001503"
     CDS             3941..>4387
                     /locus_tag="KLC54_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HBD9177864.1"
                     /translation="MNKDLFLKNTRALFEVDQILAYKLRSLEKIDFKILQNENGINFI
                     KDDIALYKNPNQELLESLTLFKSEYEKYPVLFFYGFGNGMFYKALCENKNHKHIIVFE
                     DELEILALAFHLFDFSKELKNEKLILFYTPEVTTAQLTTLFIYENIQ"
BASE COUNT         1550 a          745 c          588 g         1504 t
ORIGIN      
        1 aatcaaatta taggaaatat aaatttttac atcagagaaa atgaaataga ttttggattt
       61 tatgctaatc cattttccaa aatattaggc ataggaagaa ttttagaaca aattggtatt
      121 tattatgctt ttaaaattat aaatgtacct atactttcgt tggaagtttt tagcaataac
      181 acacaagtaa tcaacctaca ccgcaaattt ggttttagca ttgtacaaga atttttcata
      241 aaaaaacaaa aaattttaaa aatgagtcta aagcaatctg actgcaaagc cttgcttagc
      301 taattcttct tttacatctt taggggtgta cttagaaaaa tgaaaaatat aagcccctgc
      361 taaagcatca acacccaaat ttaaagcctt aactccatca cttggcttgc caagtcctcc
      421 attgacaata agaggaattt taagtttatt ttgaaagatc tttaaaagtt ctaaatcata
      481 accctttgct tttccttcaa aatccacaga agttaaaaga agctctccag ctcctttttt
      541 ttcatattct aaagcaagtt ctaaaggact tttttcaagt aaatttcccc tatcataaac
      601 acaaaattgc tctccttttc ttttaacatc tatagaacaa actatacatt gagaaccaaa
      661 acgatttgct gctttactta taaaatcttt atcttctaat gctttagaat tgatagaaat
      721 tttatccgca cctaaattta aaatcttttg tatatcttca agagttttta tcccgccacc
      781 tatagttaaa ggcataaaac attctttagc aagatcttct atactttcaa agtctatctc
      841 accacttttt gaagcatcta tatctaagat aataagctca tcaacattgc gcgcattata
      901 aattctcatt gttgaagtta aatgcccgat ggtacgaaaa ttcttaaatt ctatactttt
      961 aacaagttga gaatttttta ataaaacaca agggataatt ctagttttta acattcaaag
     1021 ccttacaaaa ttttctaaaa gttttaagcc taaattttga cttttttcgg ggtgaaattg
     1081 cgtcgcaaaa atatgatctt tttgtaaaga tgcaacaaat ttatgcccgt attgtgcttt
     1141 agcacttaca aactcatctt tacatctcac ataaaaagaa tgcacaaaat aaaaatcact
     1201 cttatcttct atgtcttgat acaaaggttc ttgttttaaa atttcaagtt cattccaacc
     1261 catgtgtggg atttttaaat ttaaatcctc ttcaaatttg actacttcac cttctataaa
     1321 accaagtcct tcgcaaactc caccttcata gcccctttct aaaaaaagct gcattcccaa
     1381 acaaatgccc aaaataggtt ttttttgcac caaaacttgc tcttttaaag cttctataaa
     1441 accaagttct tttaaatttt tcatcgcttc tttaaaagat cccactccag gtaaaagcaa
     1501 tttatctgct ttttgcaaat cttttggatt tttagctatg aaatttgtag ctcctatttt
     1561 ttcaaaagcc ttagcaacgg agtttaaatt tcctgtcttg taatcaatga gcgctatcat
     1621 tttaaaacac actcgtcttt tcttaccaaa gaaccatcat aatctcttat aaatttgcca
     1681 ttttcatcac gtttaaagat ttttttatta gtaaaagaat ctactatttt ttgaaattct
     1741 tcctcgctaa aaccactgaa ttcaaggtat tttttaatag cttttttagg gggtttacca
     1801 tcgtattttt gcaccaaacg caccccttct tcacggctga tataacctaa acgaatatcc
     1861 aaacaagcat tatccgttgc tctaccaaag ccatatttac agtattttaa ataatcatgc
     1921 acatgattag aataacaatc taaattttca aaattttcat aagtagtctc aacaggatga
     1981 tctagagtta aaaaaccata ttttttagaa atttcaagaa tttttttata gtcccattta
     2041 aaataatacc ctaaaaatag ccccgtaacc cctactcttt gaagttcttc attaattgga
     2101 taagtgtaaa aataaacatc tttttgagta ataccctcaa cacctatcat atcgctaatg
     2161 cgatttccta aaagtccgcc aaattcttct agccactctc tgtctaaaat attcttattt
     2221 ttactactcg caggaccacc atactctatc tgcggacttt ctccccagat gatcaaaggc
     2281 actccaaaat ttaccgctat gcgtggaaca gaagtaaaaa ttcccaaatg gttttgccac
     2341 tcattatccc ctgttcttat aaaagcttca cgggcaagtt tttgataaac ttttggatca
     2401 cgcttgatat ggatcaaatc cacgccaaga tgatttaaat tgtctaaatt tttgcgacct
     2461 attttcgtag gcacactagg ctcaaaacac acacacaaag gattaagtcc aagttcaagc
     2521 attttaacca cttgaaaagt agaatctttt ccaccgctta ctccgataac gcaatcatag
     2581 acaggatgtt ttttgtattt ttttacaagc tcaaaaaatt ctttttctct ttcttgccaa
     2641 ttgatttttt gatttttagc ttcttgagaa cgacaagcat cacaaattcc ttcttcatca
     2701 aaatgtaaat caggtttagt atctggcatc acacattttt tacaaaattt cataaatttc
     2761 ctttagttag tcttgaatat atatcgttat aattaaattt tattttataa ttttatgtat
     2821 ttatattata taaatattca aaatttgagt aaatatataa tataattata tattatttta
     2881 gtttaggaaa tttattataa agaaagaaaa tcatgcaaat aggaaatttt aacacagata
     2941 aaaaagtttt tatcatagca gaacttagcg caaatcacgc aggaagtctt gagatggcac
     3001 ttcaaagtat aaaagctgcc aaagaagcag gtgctgatgc gataaaaatt caaacttaca
     3061 ctccagatag catgactcta aatagcaaca aagaagattt tattattaag ggtgggcttt
     3121 gggataaaag aaaactttat gagctttacg aaagcgcaaa aactccttat gaatggcatt
     3181 ctcaaatctt tgaaaccgca caaaatgaag gcatactttg tttttcaagt ccttttgcca
     3241 aagaagattt agaatttcta aaacgctttg atcctatagc ctataaaatc gcttcttttg
     3301 aagctaatga tgaaaatttc gtgcgtttaa tcgccaaaga aaaaaaacct actgtcgttt
     3361 caacgggcat tgctacagaa gaagaacttt ttaaaatctg tgaaattttt aaagaagaaa
     3421 aaaatcctga tttaatcttt ttaaaatgca cttcggctta tcctactgcc atagaagata
     3481 tgaatttaaa aggcatagta agtttaaaag aaaaatttaa tgttgaagtg ggactaagtg
     3541 atcatagctt tggtttttta gcccctgtta tggcagtagc acttggagct agaatgatag
     3601 aaaagcattt tatgttagac aaaaacatag aaagtgaaga cagtaaattt agtcttgatt
     3661 ttgatgaatt taaagctatg gtagatgcag taagacaagc tgaaagtgct ttaggcgatg
     3721 gtaagttaga tctagatgaa aaggcgctta aaaaccgtgt ttttgcaaga agcttatatg
     3781 caagtaagga tatcaaaaaa ggtgaaatgt tcagcgaaga aaatgtaaaa tccgtgcgtc
     3841 cttcttttgg actacatcct aaattttatc aagagctttt agaaaaaaaa gctactaaag
     3901 atataaaatt tggcgatgct ttaaaagaaa gtgattttag atgaataaag atcttttttt
     3961 aaaaaatacc cgagctttat ttgaagttga tcaaatctta gcctataaac tgcgtagttt
     4021 agaaaaaatt gattttaaaa tactgcaaaa tgaaaatgga attaatttta taaaagatga
     4081 tatcgcactt tataaaaatc ccaatcaaga acttttagaa agcttaaccc tttttaaaag
     4141 cgagtatgaa aaatatcctg tattattttt ttacggtttt ggaaatggta tgttttataa
     4201 agctttatgt gagaataaaa accataaaca catcatagtt tttgaagatg aacttgaaat
     4261 tttagctctt gcttttcatt tgtttgattt cagtaaagag ttaaagaacg aaaaattaat
     4321 tttattttat actccagaag taacaacagc ccagttaaca actctgttta tatatgaaaa
     4381 tattcaa
//
LOCUS       DAEDTT010000112         4289 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.112, whole genome shotgun sequence.
ACCESSION   DAEDTT010000112 DAEDTT010000000
VERSION     DAEDTT010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4289
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.112"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1254
                     /locus_tag="KLC54_001504"
     CDS             <1..1254
                     /locus_tag="KLC54_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine--lipid A transferase"
                     /protein_id="HBD9177865.1"
                     /translation="VVQTDIKEVKDLLNLKLILFVVLALLLVFYVVKVKIDYYGSFKS
                     HIKIKIINIISGLIVVCAILIPLSKTFLPFFRNYNEIRMYNTPFYQIYAVYRYYIRFV
                     KAKPEFKTIANDAYRENNHTKKLLVLVVGETARAANYSLGGYTKNDTNFYTKKDNVVF
                     FDNFSSCGTATAVSLPCMFSISKRENYSSSEFQENAMDVLYKTGVDAAWFDNNSGGCK
                     GVCDRLAYKQKLSSDLDENLLAPFKEKLNHLSDQNIIVLHLQGSHGPTYYKRYPSEFK
                     KFTPTCDTNELSKCDSEALINTYDNTLLYTDYLLSEIIKLLKEQKDYESSLFYLSDHG
                     ESLGENGIYLHGMPYAIAPSYQTHIPAIFWSNDENLMNLAKEHKGLKLSQDNLFSTLL
                     GYFDVKTSVYEPEYDLLNPKLKANP"
     gene            1251..1607
                     /locus_tag="KLC54_001505"
     CDS             1251..1607
                     /locus_tag="KLC54_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HBD9177866.1"
                     /translation="MKPKYHFLNNARYALEGLFALFKNEMAFRIELCIIIPVIVFSFF
                     LKVSFLEHLLLISVLILILIVEALNSAIEACVDLITNEWHEKAKIAKDCASAAVFFSV
                     LLALFVWGFILYNIYL"
     gene            1604..1849
                     /locus_tag="KLC54_001506"
     CDS             1604..1849
                     /locus_tag="KLC54_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HBD9177867.1"
                     /translation="MKFENLIREILGKKRFELLKFLCENADENGFIMIKISDLEEKLH
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLNIGDKNET"
     gene            1839..2846
                     /gene="pyrC"
                     /locus_tag="KLC54_001507"
     CDS             1839..2846
                     /gene="pyrC"
                     /locus_tag="KLC54_001507"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HBD9177868.1"
                     /translation="MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPTLC
                     NLEDLKAYKMRILKACKDENFTPLMTLFFKNYDEKFLYSAKDEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHFPRLK
                     IVMEHITTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDK
                     EALCELAFSGYEKVMFGSDSAPHPRDTKECCGCAAGVFSAPVILPVLAELFKQNSSEE
                     NLQKFLSDNACKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQLK
                     Y"
     gene            complement(2871..3092)
                     /locus_tag="KLC54_001508"
     CDS             complement(2871..3092)
                     /locus_tag="KLC54_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177869.1"
                     /translation="MVKNLIIKFGRLILDAIAAISFVVALLYSLFMMFSIGFLAGLLS
                     LIVSFIALFLSFFVIYLVIDIRDALVNKA"
     gene            complement(3148..3867)
                     /locus_tag="KLC54_001509"
     CDS             complement(3148..3867)
                     /locus_tag="KLC54_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HBD9177870.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLNISFQNKSIIDI
                     GCGTGVWTLHLANEAKEILALDSANAMLEILQEDAKKLNLNNIKCKNLSFETWVQNNP
                     NTKFDLAFLSMSPALQNEKDYTNFLNLAKIKIYLGWADYRKSDFLDPIFKYFNTEFKG
                     FYKKDLENYLLEKNIFFHKIVFDETRKVQRTKEEAIENALWHLSMNKITASKETVSSF
                     VENDITETIESKIKLLIINNL"
     gene            complement(3948..>4289)
                     /locus_tag="KLC54_001510"
     CDS             complement(3948..>4289)
                     /locus_tag="KLC54_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HBD9177871.1"
                     /translation="LLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLSEIEAN
                     TNLLVQSINDMAESIKEQTAGITQINDSVAQIDQTTKDNVEIANESAIISSTVSDIAN
                     NILEDVKKKRF"
BASE COUNT         1503 a          562 c          648 g         1576 t
ORIGIN      
        1 gttgttcaaa cagacattaa agaagtaaaa gatttgttaa atttaaaatt gatcttattt
       61 gttgttttgg ctttattatt ggttttttat gttgttaaag taaaaattga ttattatggt
      121 agttttaaat cccatataaa aattaaaatt atcaatataa tatcaggttt gattgttgtt
      181 tgtgcgattt taatcccttt aagtaaaact ttcttgcctt tttttagaaa ctataatgaa
      241 ataagaatgt ataatactcc tttttatcaa atttatgccg tatatcgcta ttatattcgt
      301 tttgtgaaag ctaagccaga atttaaaact atagctaatg atgcttatag agaaaacaat
      361 cacactaaaa aacttttagt tttggtggtg ggtgaaaccg ctagagcggc aaattactct
      421 ttgggtggat atactaaaaa tgataccaat ttttatacca aaaaagataa tgtagtcttt
      481 tttgataatt tttcatcatg tggaacagca acagcggtaa gtttgccttg tatgttttct
      541 atttctaagc gtgaaaatta ttcaagttca gaatttcaag aaaatgcgat ggatgtgctt
      601 tataaaacag gtgtagatgc tgcatggttt gataataatt ctggtggttg taaaggggtt
      661 tgtgatagat tagcttataa gcaaaagctt tctagtgatt tggatgaaaa tttactcgct
      721 ccttttaaag aaaaattaaa tcatttaagt gatcaaaata taatagttct tcatttgcaa
      781 ggttctcatg ggccaactta ttataaacgc tatccaagcg aatttaaaaa atttactcca
      841 acttgtgata ctaatgaact ttcaaaatgt gatagcgagg ctttaatcaa cacttatgat
      901 aatactttgc tttatacaga ctatctttta agtgagatta taaaactatt aaaagagcaa
      961 aaagattatg aaagttcttt gttttatctt tcagatcatg gtgaaagttt gggtgaaaat
     1021 ggtatttatc ttcatggtat gccttatgct atagcaccaa gttatcaaac tcatattcct
     1081 gctatttttt ggagcaatga tgaaaattta atgaatttag ctaaagagca taaaggttta
     1141 aaactttctc aagataatct ttttagcact cttttaggat attttgatgt aaaaacaagt
     1201 gtttatgaac cagaatatga tttattaaat cctaaactta aggcaaatcc atgaaaccta
     1261 aatatcattt tttaaataac gcaagatatg ctttagaagg gctttttgct ttatttaaaa
     1321 atgaaatggc gtttagaatt gaactttgca ttattatccc tgtgatagtt tttagttttt
     1381 tcttaaaagt tagttttttg gagcatttgt tattgataag tgtcttaata cttatcttaa
     1441 ttgtagaagc tttaaattcg gcaattgaag cttgtgttga tttgattaca aatgaatggc
     1501 atgaaaaagc aaaaatcgct aaagattgtg cgagtgcggc agtgtttttt agtgtgcttt
     1561 tagctctttt tgtttggggc tttattttat ataatattta cttatgaaat ttgaaaattt
     1621 aatacgagaa attttaggaa aaaagcgttt tgaattgtta aaatttttat gtgaaaatgc
     1681 cgatgaaaat ggttttatta tgattaaaat cagtgatctt gaagaaaaat tacatcaaag
     1741 taaacctacc atcatcgcta cttttaagtt tttagaagaa aaaaaacttt ttaagcgtct
     1801 taaaaatgga ttttatcagc taaatatagg agataaaaat gaaacttaaa aatcctttag
     1861 atatgcattt gcatttaaga gataatcaaa tgttagaact tattgcacct ttgagtgcaa
     1921 gagatttttg tgcagctgtg attatgccaa atttaatccc tacactttgc aatttagaag
     1981 atctaaaagc ttataaaatg cgtatcctta aggcttgtaa agatgaaaat ttcactcctt
     2041 taatgacact tttttttaaa aattatgatg agaaatttct ttacagtgct aaagatgaaa
     2101 tttttggcat taagctttat ccagcaggaa ttacaacaaa ttcaaatggt ggagtttcaa
     2161 gttttgatat agagtattta aaacctactt tagaggctat gagtgattta aatattcctt
     2221 tgttagtgca tggagaaacc aatgattttg taatggacag ggaaagtaat tttgctaaaa
     2281 tttatgaaaa attagccaaa cattttccac gacttaagat tgttatggag catattacca
     2341 ctaaaacttt atgtgaactt ttaaaagatt atgaaaattt atacgcgaca atcactttac
     2401 atcatttaat catcacttta gatgatgtta tcggaggtaa aatgaatcct catctttttt
     2461 gtaagcctat agccaagcgt tacgaagata aagaagccct ttgcgaactt gcttttagtg
     2521 gttatgaaaa agttatgttt ggaagtgata gtgcgcctca cccaagagat actaaagagt
     2581 gttgcggttg tgccgcaggt gtatttagcg ccccagtgat tttacctgtt ttagctgaat
     2641 tatttaagca aaatagctca gaagaaaatt tgcaaaaatt tttaagcgat aacgcttgta
     2701 aaatttatga tttaaaattt aaagaagata aaattttaac tttagaagaa aaagaatggc
     2761 aagtgccaaa tgtttatgaa gataaataca atcaagtcgt gccttatatg gctggagaaa
     2821 ttttaaaatt tcaattaaaa tattgatttt ccaccttaaa ggtggaaaat ttaagcttta
     2881 tttacaagag catctctgat atctataaca agatagatta caaaaaaact tagaaataaa
     2941 gcaataaaac tgactatcaa tgacaataaa ccagctaaaa atccgatgct aaacatcata
     3001 aaaagagaat aaagcaaagc tacaacaaaa cttatcgctg caattgcatc aagaatcaag
     3061 cgtccaaatt tgatgattaa atttttaacc actaaaaact cctttgaaat aatgagtgaa
     3121 attgtaataa atataagctt aatattttta taagttattt ataattaaaa gttttatttt
     3181 agattctata gtttcagtaa tatcattttc aacaaaagaa cttacagttt ctttagaagc
     3241 tgtgattttg ttcatactta aatgccatag agcattttct atagcctctt cttttgttct
     3301 ttggactttg cgtgtttcat caaaaacaat cttatgaaaa aatatatttt tttctagtaa
     3361 ataattttct aaatcttttt tataaaaacc tttaaattca gtattaaaat atttaaaaat
     3421 cggatctaaa aaatcacttt ttctataatc agcccaacca agataaattt ttattttggc
     3481 tagatttaag aaatttgtat aatctttttc attttgcaaa gcaggggaca tacttaaaaa
     3541 tgcaagatca aatttagtat taggattgtt ttgcacccaa gtttcaaagc tcaaattttt
     3601 gcattttata ttgttaagat ttagtttttt agcatcttct tgtaaaattt caagcatagc
     3661 atttgcacta tctagggcta aaatttcttt agcttcatta gctaagtgta aagtccaaac
     3721 cccagttcca catcctatat ctataatgct tttattttga aaagaaatat ttaaattttg
     3781 taaatattca aaagtttgct tttgtatggt gtttaaagtg ttttgatatc ttgcgtaagt
     3841 tttagctttt ttatcccata aattcatata ttttccttga taaaatatac aaaatcatag
     3901 cataaatttt taaaattcaa gcccaaagaa agggcttgaa tgattaatta aaaccttttc
     3961 ttcttaacat cttctaagat attattagct atatcactta ctgtactaga aataatagct
     4021 gattcattag caatttcaac attatcttta gtagtttgat caatttgagc tacgctatca
     4081 ttgatttgag tgatacctgc agtttgttct ttaatacttt ctgccatatc attgatagat
     4141 tgaacaagta aattagtatt agcttcaatt tctgataaag acttttgagt tctttcagct
     4201 aactttctaa cttcatcagc taccactgca aagcctctac catgttctcc agcacgagct
     4261 gcttcaatag ctgcatttaa agctaaaag
//
LOCUS       DAEDTT010000113         4199 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.113, whole genome shotgun sequence.
ACCESSION   DAEDTT010000113 DAEDTT010000000
VERSION     DAEDTT010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4199)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4199)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4199
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.113"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..358)
                     /locus_tag="KLC54_001511"
     CDS             complement(<1..358)
                     /locus_tag="KLC54_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HBD9177872.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCSKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVINKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWK"
     gene            complement(358..609)
                     /locus_tag="KLC54_001512"
     CDS             complement(358..609)
                     /locus_tag="KLC54_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177873.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNTDIKKI"
     gene            complement(613..2058)
                     /locus_tag="KLC54_001513"
     CDS             complement(613..2058)
                     /locus_tag="KLC54_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HBD9177874.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
     gene            2198..3361
                     /gene="ftsW"
                     /locus_tag="KLC54_001514"
     CDS             2198..3361
                     /gene="ftsW"
                     /locus_tag="KLC54_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HBD9177875.1"
                     /translation="MVADKRLFYLSCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQ
                     LFFGISGILIMFFISRLDPDKALSKKIILAILIISFIFIIILPFLPSVLATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPMLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            3358..>4199
                     /gene="murG"
                     /locus_tag="KLC54_001515"
     CDS             3358..>4199
                     /gene="murG"
                     /locus_tag="KLC54_001515"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HBD9177876.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFGKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAQFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAK"
BASE COUNT         1310 a          711 c          607 g         1571 t
ORIGIN      
        1 gcttccagtt ctttttttct tccataaaac gatggtattt atcatataaa aacaaatgtt
       61 cattgcttaa attgggtgtt ctaagtataa ctttggtgtt aatattttta tttataaccc
      121 ttctttcact tcttgaaaaa ttatattcat taactaaaat tctaagactt aaacattcat
      181 cacaatcttt acaaataggg cgtgaaaaat acctaccaaa acgacgccaa cctcgtttta
      241 ttagctcatt attgatttct ttagagcaat tttcaatgta tttatactct attcttgagc
      301 gtttatcttt taagtaagga cactgatctt caagagtaca aaaaccaatc tcaagcatta
      361 aattttctta atatctgtat ttttgataaa ttcggaaaat tcatcctgta gtttttcttg
      421 ctttaagaaa atttcttgca tttccttatc tatgtttgtt tcttgatttt tttcgcgaat
      481 atctttggct agtttttcta aattttttac acttgctcca ctcttgcttg atttcttcgc
      541 taattttgaa gtattggtgt tagcttgcat ttctttttta atacttttaa gactgtctaa
      601 aaaatccatc tattattccc tactttctcg tattttttta agcgtagcag ctattgcagc
      661 tataacttct tctttatttt cttgatgacg atcttctgtt ttttctaata attcttgcat
      721 atgtgtctct atgaaagagg tgtctaaata cccccttcta aattctcttg tttttgtaat
      781 ggcaattaaa aatggtattg ttgttctaat atcatcaatc acaaattcct tcaaagcacg
      841 ctcaagttta ttaaccgcta aatcataact tgttgcttta ataataagct ttgcaagcat
      901 ggaatcataa taaggcggca cagtatagtc tttataaata tgactatcaa ctctaacaga
      961 tggtccaaga gctgggtagt attctcctat ttttccagga cttggaataa aatttttcca
     1021 tacattttca gcagtaattc tagcttcaat agcaaaaccc ctaggtttaa tatcgctttg
     1081 ttctaagtcc aaaatttctc ctgctgcaat acgaatttgt cttacaataa gatcaatacc
     1141 tgtaatttct tcagtaattg gatgctcaac ttgaattctt gtattcattt ccataaaata
     1201 aaagcgatta taatcatcaa gcaaaaactc tatagttcca gcatttgtat aacctacagc
     1261 cttagcagct gccacagctg taacacccat ggtttttcta agattatctg aaattccagg
     1321 gcaaggtgct atctcaatta ccttttgatg tcttctttga atagaacaat ccctttcaca
     1381 aagatggata atatttccgt agttatctcc taaaatttga aattctatat gtctgggatt
     1441 aactacatat ttttccataa atacttcatc attattaaag tatgttaaag cttctctttt
     1501 gcaagattca aaggcatttt caagatcttg ttctttatga acaacgcgaa ttccgcgtcc
     1561 acctccacca cctgaagctt ttaaaataac aggataacca atcttctcag caaaaatttt
     1621 aatttcttcc atgctatagg aatttaattt ttcagtccct ggaacaatag gtatgccatt
     1681 tttagccatt aacttacgag cgatattttt atttcccatc ttatggatta cttcagattt
     1741 tggacctata aaaataattc cagcatcttc acaagcctta gcaaattcgt aattctcact
     1801 taaaaatcca taaccaggat gaatcgcatc agcaccacaa gccttagcaa tctcaacaat
     1861 acgagcaaca tctaaatatc ctcttatagc atccgttcct atgcgataag cctcatctgc
     1921 gatttttaca tgcaaacatt cacgatcagg ctctgtaaaa actgcaacac ttttaatatg
     1981 caaatctcta caagcacgga ttactctaac agctatttca gctctatttg ctatgagaat
     2041 tttatggatt tgattcataa tttgcctttt ttgttatatt tttattgtta attttagcaa
     2101 attttcctta caaaaactta gcaaaaaatt taatttattt tagttataat aaaacttttt
     2161 aaaattttaa ttccaataaa gaaaagttat aattataatg gttgctgata aaagattatt
     2221 ttatttaagt tgtattttaa tcaccatagg aatagtattt tcatactctc ttacagcttt
     2281 tactgttctt tttcttgact atagcgagtt tcattttttt attcgtcagc ttttttttgg
     2341 aattagtggc atacttataa tgttttttat ttctcgattg gatcctgata aagcactttc
     2401 taaaaaaatt attttagcta ttttgattat ttcttttatc tttatcatca ttttgccatt
     2461 tttaccttct gtattagcaa cagctagcgg aggagctaaa cgctggatac gcttaggccc
     2521 actctctatc tctcctgtgg aattttttaa aataggattg atttattttt tagcatggag
     2581 ctatacaagg cgtattgatg atagcaaaaa agctatcaga cacgaggctt taattcttct
     2641 gccttattgt atcttagctt ctatagttat aggatatatt tatatcactc aaaacgattt
     2701 aggacaaagc gtaatttctt tctttttgat tctagcttta gctttttttg caggagctag
     2761 taaaaggctt tttgcttttg gaactttaat cattatgatg ataggtataa tggtaatttt
     2821 tagcaaccaa agaagaattc aaagaatcgc ttcttggtgg gggaatatac aagatgcttt
     2881 tttacctatg cttcctgatt ggctggcaaa tgctttaaga gtaagcagca atagcgagcc
     2941 ttatcaaatt tcacactctt taaatgctat agcccatgga ggaatgtttg gcgaaggcct
     3001 aggacttgga acttttaaat taggcttttt aagtgaagtg catactgact ttgttctttc
     3061 aggaattact gaagaaatag gactcttagg tcttggagtt atttgctata tttatctttg
     3121 gatgatttta agaattttta gaattgcagg aagatgtgaa gctaaacaag attttatttt
     3181 ctgttcaggt atagctttac ttttactttt ttctttcttt atgaatgctt ttggtattat
     3241 ttctcttact ccactaaaag gtgtagcggt tccactttta agctatggag gaagttcaat
     3301 gtgggcaatt tgtataggca taggatatgt attaatgatt tcaaaaaagg ttaaattatg
     3361 acaatagctt taacaggtgg tggaactgga ggacatttgg ccatagtgcg ttgcttatta
     3421 gaaagtgcga ttaaaaaaaa tatagaatgt gtatacatag gcagtcaaaa tggtcaagat
     3481 aaagcttggt ttgaaaatga agtacgcttt aaggaaaaat tttttttaag ctctaaagga
     3541 gtggttaatc aaagcaaatt tggcaaaatc agttctttac tccacacctt aaaactctcc
     3601 aaagattgta gagaaatttt taaaaaatac cacatccaag ccgtttttag tgtaggtgga
     3661 tatagtgcag ctcctgcatc ttttgcagct ttattctcac atttgcctct ttttatacat
     3721 gaacaaaatt caaaaagcgg ctctttaaat atgcttttaa aacctttcgc tacaaaattt
     3781 tttagcgcct ttgaaaaaga aattagccct tatcccgtag cagataaatt ttttgataat
     3841 gctaggattc gcaaagaatt aaaaaatatt attttcctag gaggatcaca aggagctcaa
     3901 tttatcaacg aactagcttt aaatttagca ccaaaacttc aagaacaaaa tatcaaaatc
     3961 atccatcaat gtggaaaaaa tgattttgaa aagtgcaaaa aacattatca aagcttaaat
     4021 atccaagctg atatttttga ttttagttta aatttggaag aaaaaatgaa aaatgcagat
     4081 ctagctatat caagagcagg tgcaagtact ctttttgaac tttgcgctaa tactttaccc
     4141 actattttta taccttatcc ttatgcagct aaaaatcatc aatactttaa tgctaaatt
//
LOCUS       DAEDTT010000114         4049 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.114, whole genome shotgun sequence.
ACCESSION   DAEDTT010000114 DAEDTT010000000
VERSION     DAEDTT010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4049
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.114"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..3652
                     /locus_tag="KLC54_001516"
     CDS             <1..3652
                     /locus_tag="KLC54_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002879698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
                     /protein_id="HBD9177877.1"
                     /translation="KPILETELNEFIKTLKDYKINLENNLKNNEDSLVANALSKFFEN
                     LSFQCEVKSIHKGNSGIDLALKKDGLAQVIIEAKLPHSREFFSPSKPNCKALHECILY
                     YLRERKALNSSLKHIIITDFYSFFIFKADLFEELFNKNKYFKEAFENFESKNSLFKGN
                     TDEIYKEFEKILNGDSTLKGLFVDLKPILEQDKLSFSKLKPLFKIFSKDCLLGEFNPN
                     DANSLNNAFYKELLYILGLYESKQNSKLIITKSEESKEEQGTFYTAINSKLKEENFET
                     ILKLLILWLNRILFLKLIESNLVRFNDDKNLKFLNFKKIPDFDKLSELFFEVLAKEKS
                     TRKKSEFAYLPYLNSSLFEKQSIENTLEISSLSNDLKLFYYKNTVLKDDKCKAKKGQV
                     GLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVLGNVFEKLNGYKEGSFYTPSFIT
                     SYMCKESITKVVLDKFNAQFDLDAKDISELRRSLRKEDKKAQKELLNSIKICDPAVGS
                     GHFLVSALNVMLSIYDELNLFDEEFYLEVQNDEILITGRKGEFIEYKRPKTPKDKAHL
                     IQQELFHTKKDIIENNLFGVDINPNSCEITKLRLWIELLKHSFYQSFDDENYHDLKTL
                     PNIDINIKCGNSLVSYFETGKSLNHYPNIKERINKYKRIVKDYKEGFYTDKSHINQEI
                     KNLKISFKNFCFADKFKKEMKSFNDKCEKYSKKYGNFLAIDDENLKFFVSANLTLFDF
                     DEKEATKEFANLKKEYDNIFNLESNHPFEWRFEFPEILDDDGNFKGFDLIIGNPPYIK
                     ENDNKDLFTNTKKLRTYQGKMDIWYHFVGRGFDILKNNGYLAFIATNNWVTNSGAKKL
                     RNIVLEESQILSLVDFSSFMVFDSASIQTMIMQFQKIKPPKNYEFHFAKITTQTPIYE
                     DVINLLKNEKTQNNEILSINLTPKKFIDKTLNFTKSDYEELFNKIQKYGKFYLEESEV
                     AQGIVPAIDEAFVIKDKNVFSKNEQCFIKEYYTGLSGKFYSSFTDKYLIYLSNKNYSG
                     NLDDLPNLKQHFQKYKEILKESKIKYKTPNKPYFYLHREREEKFFKKGEEKIISQVRC
                     IEPIFVYSNENFYGSRALFFIQTCRINLKYLTGVLNSKLIAFWLKHKGKIQGNLFKID
                     KEPLLNIPVVNINSKNEKLANKLISLVDEILKAKEQDKNANTQELENKINSLTYKLYN
                     LTEEEIKIIEGK"
     gene            3652..>4049
                     /locus_tag="KLC54_001517"
     CDS             3652..>4049
                     /locus_tag="KLC54_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HBD9177878.1"
                     /translation="MKELTKEQRQIIENKIKQEVENFNTFLDRQYCIDKIYKTIINRI
                     KSHYDIGFDFLTIIEKNITEIDKISYEVIAIEEIKQILNIEDNIRYISGVFYIFGLSR
                     TNLKTQVHGVVDILSLFETYPLVFDHCIFT"
BASE COUNT         1635 a          564 c          606 g         1244 t
ORIGIN      
        1 aaagcctatc ttagaaacag aactaaacga atttatcaaa actttaaaag actataaaat
       61 aaatttagag aataatctca aaaacaacga agattccctt gtggcaaatg ctcttagcaa
      121 attttttgaa aatttatctt tccaatgcga agtcaaaagc atacacaaag gcaacagcgg
      181 tatagacttg gccttaaaaa aagatggcct tgcccaagtc atcattgaag caaaattgcc
      241 tcattctaga gaatttttta gcccaagcaa acctaattgc aaggctttgc atgagtgcat
      301 tttatactat cttcgcgaaa gaaaagcgtt aaattcatcg cttaagcaca tcatcatcac
      361 ggatttttat agctttttta tctttaaggc ggatttgttt gaagagcttt ttaacaaaaa
      421 caagtatttt aaagaagctt ttgaaaattt tgaaagcaaa aactcgcttt ttaaaggcaa
      481 taccgacgaa atttataaag aatttgaaaa gattttaaat ggcgatagca ctttaaaagg
      541 gctttttgtg gatttaaaac ctatcttaga acaagataag ttaagcttta gtaagcttaa
      601 gcctttgttt aaaattttta gcaaagattg tttgctaggt gagtttaacc ccaacgatgc
      661 aaattcactc aacaacgctt tttacaaaga acttttatat atcttagggc tttatgagag
      721 caaacaaaac tcaaaactca tcatcacaaa aagcgaagaa agtaaagaag agcaaggaac
      781 tttctacacc gctataaact ctaagctcaa agaagaaaat tttgaaacca tcttaaaact
      841 tttgatctta tggcttaatc gcattttgtt tttaaagctt atagagtcaa atttggtgcg
      901 ttttaatgat gataaaaatt tgaaattttt aaatttcaaa aaaatccctg attttgacaa
      961 gcttagcgaa cttttctttg aagttttagc caaagaaaaa agcacgagaa agaaaagcga
     1021 atttgcttat ctgccttatc taaattcttc tttgtttgaa aaacaaagca tagaaaacac
     1081 acttgaaatt tcaagcttaa gcaatgactt aaagcttttt tactataaaa acaccgtgct
     1141 aaaagatgat aaatgcaagg ctaaaaaagg acaagtgggg cttttagaat acttgtttga
     1201 atttttggat agttttgatt ttggtagcga tgatgagcaa agcgaaattt taagccaaaa
     1261 agaactcata agttcaagtg ttttaggaaa tgtgtttgaa aaactcaatg gctacaaaga
     1321 aggaagtttt tacacgccaa gctttatcac ttcttatatg tgcaaagaaa gcattacaaa
     1381 agttgtgctt gataaattca acgctcaatt tgatcttgat gctaaagata taagcgagtt
     1441 aagaagatct ttaagaaaag aagacaaaaa ggcacaaaaa gagcttttaa actctataaa
     1501 aatttgcgat cctgcggtgg gaagcgggca ttttttggtt tctgctttaa atgttatgtt
     1561 aagcatttat gatgagctaa atctttttga tgaagaattt tatctagaag tgcaaaacga
     1621 tgaaattctc atcacgggta gaaaaggtga gtttatagag tataaacgcc caaaaacacc
     1681 taaagataaa gcccatctta tccagcaaga actttttcat accaaaaaag acatcataga
     1741 aaacaacctt tttggagtcg atatcaaccc taactcatgc gagatcacca agctaaggct
     1801 ttggatagag cttttaaaac atagttttta tcaaagcttt gatgatgaga attatcacga
     1861 tcttaaaacc ctgccaaaca tcgatataaa cataaaatgc ggaaattctt tggtatctta
     1921 ctttgaaaca ggcaaaagcc taaaccacta tcctaacatc aaagaacgca ttaacaaata
     1981 caaacgcata gtaaaagact ataaagaagg cttttacaca gataaaagcc acatcaacca
     2041 agagataaaa aatctcaaaa tttcttttaa aaatttctgc tttgcagata aatttaaaaa
     2101 agaaatgaaa agctttaacg ataaatgtga aaaatactct aaaaaatacg gaaatttctt
     2161 agccatagat gatgaaaatt tgaaattctt tgttagtgcg aatttgactc tttttgactt
     2221 tgatgaaaaa gaagccacaa aagaatttgc aaatcttaaa aaagaatacg acaatatctt
     2281 caacttagaa agcaatcatc cttttgaatg gcgttttgaa ttccctgaaa ttttggacga
     2341 tgatggaaat ttcaaaggct ttgatctcat catcggcaat ccgccttata taaaagaaaa
     2401 tgataataaa gatcttttta ccaatacaaa aaagttaaga acttatcaag gaaaaatgga
     2461 tatttggtat catttcgtag ggcgtggatt tgatatactt aagaataatg gatatttagc
     2521 atttatcgct acaaataatt gggttacaaa ttcaggggct aaaaaactac gcaatatagt
     2581 tttagaagaa tctcaaattt taagccttgt tgattttagt tcttttatgg tgtttgattc
     2641 tgcaagcata caaactatga taatgcaatt tcaaaaaata aaaccgccta aaaattacga
     2701 atttcatttt gctaaaatca caacccaaac tccaatttat gaagatgtta taaatctttt
     2761 aaaaaatgaa aaaacccaaa acaatgaaat tttaagcata aatttaactc caaaaaaatt
     2821 tatagataaa actttgaatt tcacaaaaag cgactatgaa gaacttttta acaaaatcca
     2881 aaaatatgga aaattttacc ttgaagaaag tgaagtggca caagggatag ttccagctat
     2941 agatgaagct tttgtgataa aagataaaaa tgttttttcc aaaaatgaac aatgttttat
     3001 aaaagaatat tacacaggat tgagtggaaa attttattct agctttactg ataaatattt
     3061 gatttatttg tctaataaaa attattctgg aaatttagat gatttaccta atttgaagca
     3121 acattttcaa aaatataaag aaatactgaa agaatcaaaa attaaatata aaactccaaa
     3181 taagccatac ttttatttgc atagagaacg agaagaaaaa ttttttaaaa aaggtgaaga
     3241 aaaaattatt tcacaagtta gatgtataga gccaattttt gtatattcta atgaaaattt
     3301 ttatggttct agagcattgt tttttattca gacttgtaga attaatttga aatatttaac
     3361 tggagtttta aattcaaagc tcatagcttt ttggttaaag cacaagggaa aaatacaagg
     3421 aaatctattc aaaattgata aagagccttt gctaaatatc cctgtagtaa atataaattc
     3481 taaaaatgaa aaattagcaa acaagcttat aagtttagtc gatgaaattt taaaagccaa
     3541 agagcaagac aaaaacgcaa atacccaaga actagaaaac aaaatcaatt ctttgactta
     3601 taaactctat aacttaaccg aagaagaaat aaaaatcatt gaagggaaat aatgaaagaa
     3661 ctaacaaaag aacaaagaca aatcatagaa aacaaaatca aacaagaggt tgaaaatttt
     3721 aatacttttt tagataggca atactgcatt gacaaaattt ataaaacgat tataaatcga
     3781 ataaaatcac attacgatat tggatttgat tttttgacaa ttattgaaaa aaatataacc
     3841 gaaattgata aaatttccta tgaagttata gcaatagaag aaataaaaca aattttaaat
     3901 attgaggata atataagata catatctggt gtattttata tttttggttt atctagaaca
     3961 aatttaaaga cacaagttca tggagttgta gatattttat cattatttga aacctatcct
     4021 ttagtgtttg atcattgtat atttaccca
//
LOCUS       DAEDTT010000115         4037 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.115, whole genome shotgun sequence.
ACCESSION   DAEDTT010000115 DAEDTT010000000
VERSION     DAEDTT010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4037
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.115"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(110..637)
                     /gene="tpx"
                     /locus_tag="KLC54_001518"
     CDS             complement(110..637)
                     /gene="tpx"
                     /locus_tag="KLC54_001518"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HBD9177879.1"
                     /translation="MSTVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(735..1475)
                     /gene="peb2"
                     /locus_tag="KLC54_001519"
     CDS             complement(735..1475)
                     /gene="peb2"
                     /locus_tag="KLC54_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HBD9177880.1"
                     /translation="MKKILILSLVAASFLNAEILVYGPGGPAPVLKELALKFEEKTKE
                     KVIVTAGPTPAWIDKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIV
                     RPNNPKNIKNFEDILKDGVNVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAK
                     NSKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKGLEN
                     KKALEFVDFIKSKEAQKVWKKYTWKEVK"
     gene            complement(1524..3554)
                     /locus_tag="KLC54_001520"
     CDS             complement(1524..3554)
                     /locus_tag="KLC54_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HBD9177881.1"
                     /translation="MPLSKLNNEQYLAATADFGRNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKELLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELASETRFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
     gene            3683..>4037
                     /locus_tag="KLC54_001521"
     CDS             3683..>4037
                     /locus_tag="KLC54_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177882.1"
                     /translation="MNLKIFSIIVSILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNSYSPSIQTNNSSSDININNNTIQKQETNLLDENQSLNNDTFNTSISE
                     NNQSLNNDTNTSNNIN"
BASE COUNT         1392 a          741 c          443 g         1461 t
ORIGIN      
        1 aacttaacaa ttaaaatata atcaacttaa caattaaaat ataatcaact taaaataata
       61 aaaaaatgaa gatgtaaaaa ttaagcccta agaatgggct taatcaaaat taatggcaac
      121 cacaaccacc gcagcagcta gaaccaccaa aaaatgcatc aagttttgca atatctggca
      181 tttctgtgat ttcatttaca agttctttat atgccacttt accctcttta atcacaaata
      241 cggcacgagc taaaagccct tctaaagcac cttcatttat caaaacacca tatttttcac
      301 caaattcttt tgccacaaaa tcacttgcaa cacttaaatt ttcaatacct tctgtactgc
      361 aaaatcttcc catagcaaaa ggtaagtcca tacttactac aatcacttca gcaccattgt
      421 aactggctac ttttttatta aattctctag cttctgtagc acaaactggt gtatctaagc
      481 ttggaacact taaaatgatt tgagttttac ccgctgcacc gatttcaatc acgcttaaat
      541 ctttagcttt aagatttacc ttaggagcat ctgctccaac ttctactgaa tttcctttaa
      601 gttttacagg atttccttta aaatttactg tactcattta atttcctttt ttgatatttt
      661 aaacattatt gcaattaatg ttttaggagt gattatatcc tataaatatt aattattttt
      721 aatttcactg aaaattattt tacttctttc caagtatatt ttttccacac tttttgagct
      781 tctttactct taataaaatc gacaaattct aaagcttttt tattttctaa accttttttt
      841 gtaggagcta tttcagctgc acgataaatc actgcatttt tatctttgat aaataaagct
      901 ttatcatcgc ctaaagcctt tgcccaatga gaccaaatga ttaaagcatc aatatttgga
      961 ttgttattcc actcatctac agcagctttg gaatttttag cataaatttt tatattttta
     1021 cgtaatttta ccaaattttc tctttttgca ctttttaaag ccatatcttc ataaagtcca
     1081 acttgtcctg caccatcaac caccataaca tttacgccat cttttaaaat gtcttcaaaa
     1141 tttttaatat tttttggatt atttggacgc acgataatac ctgatggacg cacatttaaa
     1201 acgcttaaat tttccaaact taaacttgga atttttttag caaaatcatc catcattgaa
     1261 gtattgcctg aaaaaatcaa atctgcattt tcttttgctt tatctatcca agctggagtt
     1321 ggacctgcgg ttacaatcac cttttctttt gttttttcct caaattttaa agcaagctct
     1381 tttagcacag gagcaggacc acctggacca taaactaaaa tttcagcatt taaaaaactt
     1441 gctgctacta aacttaaaat taatattttt ttcataaaat aaacctttct ttaataatat
     1501 aacttacttg aaaggaaatt ttatcaatct atagttaact ctcccttgca aagccctgct
     1561 tctataagaa aacgagaagg agcaaaagaa gtttttttgt ttttatcata tttagcatag
     1621 cttaaataaa gtatattttt tgccctagtt accgcaacat aaaaaagtct tctttcttct
     1681 tctaagcttc cacccattcc cataagcttt tgattaggaa agcgaccttg tgcaagatca
     1741 atcacaaaaa caagatcaaa ttccaagcct ttactcgcat gcacgctaag caaattaact
     1801 cctttgccgc tactcatttc gcttgcacct aaagttagaa aattataata cttgtaaata
     1861 tcgctataat tttttgtaag ctcttttaaa acattgaatt ttgtttctat tttttctaaa
     1921 ttttcactct ttcttaataa atccacctgc cctgctttat ttgtcgctct tttggttgca
     1981 agttcttcgc aaatttctct ataaaaagaa ttttcacaaa ttaaattgac taaagtcaaa
     2041 gaatgtttta tttccatagc tttttttaaa aaaagataga ttttttccaa atttctagcg
     2101 cacaaatcat tgatttttga aagtcttaaa ataggatgtg catcaaattc actctcaaat
     2161 ttaaaacgag tttcgctggc taattcttcc aaatctgcaa aaagcccaag ttgataattt
     2221 cttttttgat gattttgcaa atttacattt ttatcaggat ctaaaaaacc ttttattaaa
     2281 tttccatgcc ctaattttaa aagtgcgtca aaaatttctt ttgctaaaac tccacccaca
     2341 cctttggtgt attgaaccaa atgaataaaa gccataatat ccttaggatt taccacaaga
     2401 gcaagcatag agctaaaagc tttaacttct aaactttcaa aaaaacttcc acttcccttt
     2461 ctcacacttg caatgccctg ctcccttaaa gctacttcaa ccccatcagc acttgagttg
     2521 ttgcgaaaaa tcacggcaat ttcttccaaa cttactccgc ttgtaagtat cattttggct
     2581 atattttgat actgatcaaa taattcttca aaagtaagca aagatggggc tttaaactca
     2641 tcatttcttg taacaataag ttcttttgga tataatcttt cgttatttaa aatcacttta
     2701 ttagccaaag ctaaaatact tcttgatgaa cggtagtttt tatttaaaga aaaaattttt
     2761 gcatctttaa aacgatcttt aaacccacct atgatattaa tatccgctcc attaaaagca
     2821 taaatacttt gatcataatc ccctacacaa aacaaacttt tactatgaaa agcctctatt
     2881 aaggaacttt gcaaagtgtt tgtgtcttga tattcatcta ctaaaatttc atcaaattca
     2941 tatttttctt cttttaaaag ctcttttaga ttgataagta agtcattaaa atctacataa
     3001 ttaaaacgct ttttttcatt atcatattct tttaaaatat cttcataaat ttcagcataa
     3061 atactttgat cttcgtagtt ttgacaaaac caagtataaa aatcttgatt gtgtgctttg
     3121 ttttgaaaca aagaataaag atcatataaa taacttgatt gataaggttt tatatcactt
     3181 aaatgcctaa aagttctttt ttcatagaca cttttaagta gagtttttaa ctcgcttgct
     3241 tgctttaagg ctatattttt atccgcattt ctaagtaagg tataagccgt actatgaaaa
     3301 gttcctgcaa gtattttact ggtaatattt ttatcaaaaa atttccctaa acgccctatc
     3361 atttctttac tagctttatt tgtgaaagtc aaaagcataa ttttttgagg tgccactccc
     3421 ttgcttaaaa gataagaaat tcttgcaaca atagtagaag tttttcccgt ccctgcactt
     3481 gcaataacaa gattgcgtcc aaaatcagca gtagcggcaa gatattgttc attatttaat
     3541 tttgaaagtg gcattatttt ccttataaaa gttaaaatta taaaaaaaaa ttacttaaaa
     3601 atataaaaat ttaaaattac tttatattag attatagtac aatgctaaaa ttatttaact
     3661 ttctgttttt aagggatagc aaatgaattt gaaaattttt tctattattg ttagcatatt
     3721 aattgctgtt attgtgatat taggtggaac atattattat ctttttgaat attcaaaacc
     3781 aaagaattac accttaaata ccaacactta caccgaacaa aaatcgtata ccaataacta
     3841 cgataattcc tattcacctt cgatccaaac caacaatagt tcatcagata taaatattaa
     3901 taacaatacc atccaaaagc aagaaacaaa cctattagat gaaaatcaaa gcttaaataa
     3961 cgatacattt aatacatcaa taagcgaaaa caatcaaagc ttaaataatg acaccaatac
     4021 aagtaataat attaata
//
LOCUS       DAEDTT010000116         4006 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.116, whole genome shotgun sequence.
ACCESSION   DAEDTT010000116 DAEDTT010000000
VERSION     DAEDTT010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4006)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4006)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4006
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.116"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..657
                     /locus_tag="KLC54_001522"
     CDS             <1..657
                     /locus_tag="KLC54_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyl transferase"
                     /protein_id="HBD9177883.1"
                     /translation="ASGFFKQEVIFVKNIENLDDFFKNLKNCLIISANNFYIFKKECI
                     QNNAIINYHNALLPFHKGCNAHIWSIWENDKKTGITWHMVEESIDTGAILTQKEIKLD
                     DNFTALSLLNTQHNLAMASFKEAVENLENKALKAQISKKGYHKKLALPNEGYLDLTWD
                     KEKISRFLRAMDCGVLSGAPKARLKILGEEKEILFYEINELDLILNLSDNTLLKITKE
                     "
     gene            659..895
                     /locus_tag="KLC54_001523"
     CDS             659..895
                     /locus_tag="KLC54_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HBD9177884.1"
                     /translation="MQNTVDLIKQFFINIDRADIDENMENLLSEDIIDSIDIMSLVAE
                     IEKFYKKPLKAEFIKAENFESFKTIQDMINQAFK"
     gene            complement(888..2099)
                     /locus_tag="KLC54_001524"
     CDS             complement(888..2099)
                     /locus_tag="KLC54_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HBD9177885.1"
                     /translation="MLINQTFEIDSCDDVELGIKRTSKLEYRISYDDEKDIKAIVFIV
                     GGFGANANISFLDFDREYIAKKFDVVAVHVFYHCFCHRRSNVEKYSAITMFTKEDVSN
                     LSQALLDIGIKIDVDIQNAHQCYELLNQNITTLKSQGRLVQNYQAKLSSTFIPPNGDY
                     QNFGIMPAIDHINALKDLVKRFPKFADLPKIYGGGSYGGYLSLLIAKIAPWYVDGVID
                     NSGTVLPLLECIIGRKLNKPEFIYNDPNTLIEMFIKTYWIREDENSSYFIANENYMIR
                     SLLNSSHLTIQANINKNIIFISYHSLKDEFNTAKDKQTLFLAYKELGYDATLYLIKDE
                     SEIDGRFIKDLKHGMRISNKALFRKELPLMLEKLQGRKSFMQENSISYPCRDQKFIFE
                     DDKDKFTLIIT"
     gene            2191..2889
                     /gene="pseF"
                     /locus_tag="KLC54_001525"
     CDS             2191..2889
                     /gene="pseF"
                     /locus_tag="KLC54_001525"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HBD9177886.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLIAYSIENALNSGIFD
                     EVILSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDNV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFMFKPHSGVFVLPRNLVCDIDTMQDLE
                     FAKILYKANHESTF"
     gene            2873..3697
                     /gene="pseG"
                     /locus_tag="KLC54_001526"
     CDS             2873..3697
                     /gene="pseG"
                     /locus_tag="KLC54_001526"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HBD9177887.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYDDVSFACLPLKGSLID
                     EIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     LKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQETKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHSNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICVAKNQEKLANWLAQKGYEVEYKY"
     gene            3694..>4006
                     /gene="pseH"
                     /locus_tag="KLC54_001527"
     CDS             3694..>4006
                     /gene="pseH"
                     /locus_tag="KLC54_001527"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HBD9177888.1"
                     /translation="MIKLKNFTELNPQEIELIFKWRNHPDISQFMKTKHIDFEEHLRF
                     LKNLHQDSSKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAKPDLKGVGQILMNEIIK
                     YA"
BASE COUNT         1485 a          594 c          585 g         1342 t
ORIGIN      
        1 gctagtggtt tttttaagca agaagtaatt tttgtaaaaa atatagaaaa tttggatgat
       61 ttctttaaaa atcttaaaaa ttgcctcatc atcagtgcta ataattttta tattttcaaa
      121 aaagaatgta ttcaaaataa cgctattatt aactaccata atgctttatt gccttttcat
      181 aaaggatgta atgctcatat ttggagcata tgggaaaatg ataaaaaaac aggcattact
      241 tggcacatgg ttgaagaaag tatcgatacg ggtgcgattt taactcaaaa agaaataaag
      301 cttgatgata attttaccgc cttaagtctt ttaaacactc agcacaatct tgctatggct
      361 tcatttaaag aagctgtaga aaatttagaa aataaagcac ttaaagctca aatttcaaaa
      421 aaaggatatc acaaaaaatt ggctttgcca aatgaaggtt atttagatct tacttgggat
      481 aaagaaaaaa tttctcgctt tttaagagct atggactgtg gtgttttaag tggagcgccc
      541 aaagctagat taaaaatcct aggagaagaa aaagaaattt tgttttatga gatcaatgaa
      601 cttgatttaa ttttgaattt aagcgataat actcttttaa aaatcacaaa ggaataaaat
      661 gcaaaataca gtagatttaa tcaaacaatt tttcatcaac atagatagag ccgatataga
      721 tgaaaacatg gaaaatcttt taagcgagga tattatagat agtatagata tcatgtcttt
      781 agttgctgaa attgaaaaat tttataaaaa gcccttaaaa gccgaattta tcaaagcaga
      841 aaattttgaa agttttaaaa ccatacaaga tatgataaat caagccttta agtaatgatt
      901 aaggtaaatt tatctttatc atcttcaaaa ataaattttt gatccctaca aggataagag
      961 atggaatttt cttgcataaa agattttctt ccttgtagtt tttcaagcat taaaggaagt
     1021 tcttttctaa ataaagcttt attactgatt ctcatcccat gttttaaatc ttttataaat
     1081 cttccatcta tctcactttc atcttttatc aaatacaaag tcgcatcata gcctaattct
     1141 ttgtatgcta aaaaaagagt ttgtttatct ttggctgtat taaactcatc ttttaaacta
     1201 tgataagata taaaaatgat atttttgtta atattagcct gtatggttaa atgagaagaa
     1261 tttagcaaag aacgaatcat ataattttca ttagcaataa aataagacga attttcatcc
     1321 tctctaatcc aataagtttt gataaacatt tctattagcg tattaggatc attgtaaata
     1381 aattcaggtt tatttaattt tcttcctatg atacactcta gtaatggcaa aacagttcct
     1441 gaattatcaa tcacgccatc cacataccaa ggagctattt ttgctatgag taaagatagg
     1501 tatcctccat aagacccccc cccataaatt tttggtaaat ctgcaaattt tggaaagcgt
     1561 ttcactaaat cttttaaagc attgatatga tcgatagcag gcataatgcc aaaattttga
     1621 taatccccgt taggtgggat aaaagttgaa ctcaatttcg cttgataatt ttgtaccaat
     1681 cttccttgtg attttaaagt agtaatattc tgattgagca attcataaca ttgatgtgca
     1741 ttttgaatat caacatctat cttaatacct atatctaata aagcttgaga taaatttgac
     1801 acatcctctt ttgtaaacat tgtaattgca ctatatttct caacatttga tcttctgtga
     1861 caaaaacaat gataaaaaac atgcaccgct acaacatcaa attttttagc aatatattct
     1921 ctatcaaagt ctaaaaaaga aatatttgca ttagctccaa aaccacccac tataaaaact
     1981 atagctttga tatctttttc atcatcataa cttatacggt attcaagctt actggttctt
     2041 ttaataccta gttctacatc atcacaagaa tcgatttcaa aggtttgatt tataagcact
     2101 attccaccct ctttgcatta ttttattgta ttttaaagac aattatactt aaattttagt
     2161 aaaatacaac acaaaaaaca aggcttagct atgaaaaatc tttgcatcat ccctgctcgt
     2221 ggtggatcaa aaagaattcc tagaaaaaat atcattgatt ttctaggtaa acctttaatc
     2281 gcttatagca tagaaaatgc tttaaattca ggtatttttg atgaagtaat actttcaagc
     2341 gatgatgaag aaatcataga agtagcctta aaatatggtg caaaagctcc ttttgtgcgt
     2401 gataaaaatt taagcgatga ttatgcttca agcactgctg tagtgcaaaa tgctatagaa
     2461 attttacaaa gccaaaatca aatttatgat aatgtctgct gcctttatgc tactgctcct
     2521 ttgttaaaca aagatatttt aaaacaagcc tatgaaaaat ttatccaaaa tcaaagcaag
     2581 tttttatttg ctgccactga gtttgagtat cctatacaaa gggcttttta tctaaatgaa
     2641 aacaatcaag tttatatgtt tgatgaaaaa cattataaaa gccgctcaca agacttaaca
     2701 aaagcttatc atgatgcagg ggctttttat tttggtacaa gtaaagcttg gcttgaggaa
     2761 gattttatgt ttaaacctca ttctggcgta tttgtattgc caagaaattt agtttgcgat
     2821 atagacacca tgcaagattt ggaatttgca aaaatacttt ataaggcaaa tcatgaaagt
     2881 actttttaga agcgatagct cgagtcaaat aggctttgga cacattaaac gcgatctagt
     2941 cttagctaaa caatacgatg atgtaagttt tgcttgtttg cctttaaaag gctctttgat
     3001 tgatgaaatt ccttatcctg tttatgagct tagcagtgaa agtatctacg agcttattaa
     3061 tctcatcaaa gaagaaaaat ttgaacttct tatcatcgat cactatggca tcagcgtaga
     3121 tgatgaaaaa ctgatcaagc ttgaaacagg ggtaaaaatc ttaagctttg atgatgaatt
     3181 aaagcctcat cattgtgaca ttttactcaa tgtcaatgct tatgcaaaag caagtgatta
     3241 tgaaggttta gtacctttta aatgcgaagt aagatgtggt ttttcttatg ctttaatcag
     3301 agaagaattt tatcaagaaa ccaaagaaaa tagagaaaaa aaatacgatt ttttcatttg
     3361 catgggcgga acagatatca aaaatctttc cttgcaaatc gctagcgaat tacctaaaac
     3421 aaaaatcata agcattgcaa ctagctcttc taatcccaat cttaaaaaat tacaaaaatt
     3481 tgcaaaatta catagtaata ttagattatt tatcgatcat gaaaatattg caaaattgat
     3541 gaatgaaagc aataaactca tcatcagtgc aagttcttta gtcaatgaag ccttactttt
     3601 aaaagcaaat tttaaagcca tctgtgttgc taaaaatcaa gaaaaactag ccaattggtt
     3661 agctcaaaaa ggctatgaag tggagtataa gtattgataa aacttaaaaa tttcacagaa
     3721 cttaaccctc aagaaataga gctgattttt aaatggcgca atcaccccga tatcagtcaa
     3781 tttatgaaaa caaaacatat tgattttgaa gaacatttaa gatttttaaa aaatttacat
     3841 caagattcta gcaaaaaata ttttttagtt tttcaagatg aacagattat cggtgtgatt
     3901 gattttgtca atatcacaac taaatcttgc gaatttggac tttatgcaaa acctgattta
     3961 aaaggcgtag gacaaatttt aatgaatgaa attataaaat acgctt
//
LOCUS       DAEDTT010000117         3854 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.117, whole genome shotgun sequence.
ACCESSION   DAEDTT010000117 DAEDTT010000000
VERSION     DAEDTT010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3854)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3854)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3854
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.117"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..231)
                     /locus_tag="KLC54_001528"
     CDS             complement(<1..231)
                     /locus_tag="KLC54_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177889.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRTVFSLFFLIPIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRISMGDFYLY"
     gene            complement(212..2155)
                     /gene="ligA"
                     /locus_tag="KLC54_001529"
     CDS             complement(212..2155)
                     /gene="ligA"
                     /locus_tag="KLC54_001529"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HBD9177890.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRAFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESEFRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGLGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCVNLDEVLKAYDELLALREKKPMMMDGMVV
                     RIDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKDRREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWHKQSFEAYANLEGFGEQMALSLCEFTRVNRTRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRSRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LIKAKELEIKCIDESAFNELVKE"
     gene            complement(2156..3298)
                     /gene="folP"
                     /locus_tag="KLC54_001530"
     CDS             complement(2156..3298)
                     /gene="folP"
                     /locus_tag="KLC54_001530"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HBD9177891.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRVGAELITHKEVITAKITHSNVLLMASKEQIQKLIVKEKLQDFGLK
                     NLALFLQKDFLKPKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPEYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYEAKYCLMHMQNNPNNMQDNPFYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            complement(3300..3845)
                     /locus_tag="KLC54_001531"
     CDS             complement(3300..3845)
                     /locus_tag="KLC54_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HBD9177892.1"
                     /translation="MINNFGIKKLRFFMPQNEFLLDDARAVEKESYIAETEEKIIVLM
                     ADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIKSRLICEKRKVEKEVKKLD
                     LDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKYKDFNAEELEFFYESYELA
                     KLNSKSGVLLATLLLNYYTKK"
BASE COUNT         1266 a          755 c          437 g         1396 t
ORIGIN      
        1 ataaagataa aaatccccca tactaatacg ataaaacaaa cttcccttaa tcaaagtagc
       61 ttcttttata atattttttc taagctttaa aaataaaaag aattcccaaa aaagtgttaa
      121 aaaaatagga attaaaaaaa ataaagaaaa aacagtcctt tgccaagtta gtaaaaagcc
      181 aaaaaggctt aaaagcgtta aaatataaga actattcttt aacaagctca ttaaaagcac
      241 tttcatctat acattttatt tcaagctctt tagccttaat cagcttagaa cctgcctctt
      301 ctccaaaaag cacatagtca gtctttttag aaactgagcc acttacctta cccccaagct
      361 tttctatcaa agccttaaac tcatctcttg agcgtgaaag agtacctgta attacaaaag
      421 ttttaccaaa aatcacacca tcgcttttga tttcaagttt ttctattttc aaatttaaaa
      481 gcttgtaaaa ctcatcaatt cttgtacgat taacacgcgt aaattcgcaa agacttaaag
      541 ccatttgctc tccaaaacct tctaaattgg cataagcttc aaagctttgc ttgtgccact
      601 ctttaccaaa acttaaactt aattttttag ccgcaacctc gccaatatgc tctatcccta
      661 aagctgtgat aaaacgaaaa agctcacatt ctcttgcttg ttctatagca tttaaaagat
      721 tgttaatttt cttttcctta aagccttcca aaccttcaaa atcactaaat tttaaatgaa
      781 aaatgctctc aagcgtagtg atttttttgt gtttgtataa aagctctact atattttctc
      841 caagcccgtc gatattaaga cattttttag aaacaaaatg aatgatagaa tttacaagtc
      901 tatcctcaca atctatattt tgacatttta ttaaagttcc ttcatctaaa agctcacttt
      961 ggcaagtagg acaaagctta gggcgtgaaa tttccatctc taaaccttct ctacgatctt
     1021 taaaaacctt agtgatttta gggataacat cgccacttct tatcacgctt acaaaatcat
     1081 tgattttaac atcaagtctt gcaatctcat caaaattatg gagtgtggct gattttacta
     1141 caaccccatc taaatttaca ggttctaaaa ccgccacagg agtgatcact ccacttcttc
     1201 ccacttgtaa atttacgcct attaaacgcg tggttttttc aagtgcagga aatttaaaag
     1261 ctgccataaa ttttggaaat tttaccgtat agcctaattc ttcacaaagt gcaagatcat
     1321 caattcttac caccatacca tccatcatca taggcttttt ttctcttaaa gctaaaagct
     1381 catcataagc ttttaaaacc tcgtctaaat taacacaaag tcttacaaaa tcatctttta
     1441 aaaaaccgag ctctctgata aattgcatca cctcactgtg tttagtaaaa tttaaggtat
     1501 tttcccctag tccccaagga taaaatttca aattcctttc tttggtgatg cttgtatcaa
     1561 gctgccttaa actcccactt gcagcattgc gtggattggc aaataaactt tgatttaaaa
     1621 gggctctttt ttcgttgatt ttctcaaaat catcttttaa aatcaccact tctccacgaa
     1681 tttctatcct ttctttatag gctatatttt taggtatatt ttctatctca aaaacattaa
     1741 gcgttatatc ctcacccact tcgccatcgc ccctagtggc accgcttact aatttaccat
     1801 tttcataaag caaatttaaa ctcgctccat caaatttagg ctctataaaa aagttttttt
     1861 cacattttgc gcgttttgcc caagccctaa actcactctc atcaaacaca tcttccatcg
     1921 accacatacg ctttaaatga gctatttttt taaactcgct ttgtatagta ggagctattt
     1981 tttgcgttgg agagtctttt gaaatttcat ctttattttg ttcttcaaaa gctcttaatt
     2041 ctctgattaa agcatcgtat tcttcatcgc tagccaaggg ttcatctttt tcataatatg
     2101 ccctcatcca caaatttgct aaagcaactt tttctaaata ctcttctttt ttcatctaaa
     2161 ctcctatatt atccattgcc tgtgctaaag caaaaagttg tttgtgctca tataaatcat
     2221 gcactcttat aatactagca ccattttcaa aagcctttaa atgcaaatac aaagttcctg
     2281 ctaaacgatc tttaatctcg ctttgaaaat acgcattaat cacacttttg cgactcgcac
     2341 ctataagcaa aggcttatta aattgtaaaa aatgttctaa gtgtttgatt aaaatcatat
     2401 tatggcccgc actctttcca aaaccaatac ctacatctaa aatactttct tttactccaa
     2461 aactttctaa aagctcaagt ttttctttaa aaaacaaagt catctcatca agcaaatctt
     2521 cataaaaagg attatcttgc atgttatttg gattgttttg catgtgcatt aagcaatatt
     2581 ttgcctcata cttacttgca agtttggcta gattaagatt tcttaaactt gtaatatcat
     2641 taatgagttt aaaaccctta tttaaagcat attctagaca atattcatca aaactatcta
     2701 aactaaaaat tgcttgttcg taataatttt tctcataaat taagtcaagt acttttttca
     2761 gtcttttaaa ttcctcttcc ttaccacaat actcactccc aggtcttgaa ctaaccgcac
     2821 ctatatcgat atattcaggc tttaaagcaa gaaagtcatt aagtcttttt tcaaagtctt
     2881 cttcactcac acgacttttt gcattaaaac tgtcttcatt aacattaatc actgccataa
     2941 gctcggcttt tttcggtttt aaaaaatctt tttgcaaaaa aagagccaaa tttttaagtc
     3001 caaaatcttg aagtttttct ttgacaataa gcttttgaat ttgctcttta cttgccatta
     3061 aaagcacatt tgaatgagtg atttttgcag taattacttc tttatgagta ataagttcag
     3121 ctcctactct taaagcatct tgttttaaaa tatttgccgc aggagtagaa atatctttga
     3181 taaaaataaa atgaattttt gttttttcac tcataatctt ttgtcccatt ttatgagggt
     3241 ttatgaaaga acaaagcaaa ttaaaatcgg tgtttggatt gattttaaaa aatttcattt
     3301 tatttctttg tatagtaatt tagcaaaaga gtagctaaaa gcaccccgct tttagaattt
     3361 aattttgcaa gctcataact ttcataaaaa aactctaatt cttcagcatt aaaatcttta
     3421 tatttcacac attctttagc aagcaatgcg atttgatcca taagttcatt tttatccaaa
     3481 ttttcatttt tttgcaaaaa atcaaaaagc attcttaaat ccattctttt aagatctaaa
     3541 tcaagttttt taacttcctt ttcaactttt cttttttcac aaataagacg tgattttata
     3601 gtaggtaaaa gtaaattttt agaaggtatc acaataagaa atttaatatt ttttggaggt
     3661 tcttcaagaa gtttaagtaa aaaattttgt gcttctatcc tataagaatc cgccattaaa
     3721 acaataattt tttcttcggt ttctgcgata tagctttctt tttcaactgc tcttgcatca
     3781 tcaagtaaaa attcattttg tggcataaaa aatcttaatt ttttaatacc aaaattatta
     3841 atcatttctt cttt
//
LOCUS       DAEDTT010000118         3848 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.118, whole genome shotgun sequence.
ACCESSION   DAEDTT010000118 DAEDTT010000000
VERSION     DAEDTT010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3848)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3848)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3848
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.118"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..589
                     /locus_tag="KLC54_001532"
     CDS             <1..589
                     /locus_tag="KLC54_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD9177893.1"
                     /translation="SGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIE
                     LKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHL
                     FENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALEL
                     GIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF"
     gene            complement(586..1320)
                     /locus_tag="KLC54_001533"
     CDS             complement(586..1320)
                     /locus_tag="KLC54_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HBD9177894.1"
                     /translation="MKPIIIFLSLFLIPLFAADDLKSGFGEEYYKLDIDQKRQIFFTK
                     MNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFA
                     EYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKH
                     KIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERK
                     GYYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(1295..2044)
                     /locus_tag="KLC54_001534"
     CDS             complement(1295..2044)
                     /locus_tag="KLC54_001534"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HBD9177895.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFVHHINKINPNMSFLTGAGVIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFAYKNEELFFEGKVKYCFEANYNFS"
     gene            complement(2041..2646)
                     /locus_tag="KLC54_001535"
     CDS             complement(2041..2646)
                     /locus_tag="KLC54_001535"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HBD9177896.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHEILDENA
                     LELEKIFSPFSLKNLLTKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLD
                     SQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM"
     gene            2707..3696
                     /locus_tag="KLC54_001536"
     CDS             2707..3696
                     /locus_tag="KLC54_001536"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HBD9177897.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATVKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPSGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE"
BASE COUNT         1239 a          559 c          607 g         1443 t
ORIGIN      
        1 aagtggacgc agtaaatttg gagaaaaaaa catacttcta agacaaagct tcactctttt
       61 agaattagaa attttaaagt atttagcttt aaatttgggt cagcaaatca gtatttctaa
      121 gatatttata gaactcaaaa aaagattaaa aacttcaaaa gatagtgttt atcaagctat
      181 aaaaaaatta gaaaatactt atgtgatcta tactttaaaa catgatgaaa aaaaacttca
      241 aaagatttat tttaaagatt ttggcctaag aaataatctt tgtatttcaa aggatttttc
      301 acatttattt gaaaatttag ttttaagcga gttgtttaaa tttaaagaag aattttttta
      361 taacaaatac tttaactttt atagccaaat atctaaaatt gcttatattt caagtccaac
      421 tttagatatt gatttgatca agctacgtgc taagaaaatt ttaccaaagg ctttagaact
      481 tggaattttt catgtgattt ttatcactct ttcaagcgag gataattttt ttgagcaagg
      541 ggttaaattt gaagtcatat cttttgataa attttcactt ggattttagg tgttgtttga
      601 gtttgtatcg tatttttcaa ggttgtatcg tttgatgatt tttgtaataa gattgatata
      661 atatcccttg cgttcagaat aagaatctaa agttttaata gcctctagcc ctgttatctc
      721 tttgccttcg ctttcaaatt tagctcttgc atcgcgaaac ttttcataag caaaatgacg
      781 atttaaattt aaaacataag agtcaacact atcttgcaga ctatcaaaaa ttttaatttt
      841 gtgtttttta tctggatgtc ttaaatcagg aattaaacct ttctcacccc aagtccattc
      901 tccaaaaaga ttgtttgctt ctcttgcgaa gcgactggta cctgtagcac tttcaactaa
      961 agcttgggct atacccatgg attttggaat tttttgaata cgttttttat attctgcaaa
     1021 atcataaaga ttttcaatgc gatatttgtt ttttatcgtg ataagttttt caagatttat
     1081 ttggtttgaa gtcctaaagc ctgttttgta agcatcttta aaaaaggctt cgataaaggc
     1141 tctttcttgt tcaatttttt taaagctttg atcaaacatt tcattcattt ttgtaaaaaa
     1201 aatttgcctt ttttgatcta tatcaagttt gtaatattcc tctccaaatc cactctttag
     1261 atcatcagcg gcaaaaagtg ggattagaaa aagactaaga aaaattataa ttggcttcaa
     1321 aacaatactt tacctttcct tcaaaaaaca attcttcatt tttatatgca aaccctacct
     1381 cttcaccact tttaggagtt attttaactt tattttgtac ttttttattt aaaaatgcca
     1441 gataaaaaca agcccccatt cctgtgccac aagctaaggt ttcatcttca actccgcgtt
     1501 cataggtgcg aacttttaaa tgattttcat ctaaaatttt tacaaaatta acattggcat
     1561 tatatttttg tctcattttt tgacaaagca ttgtatcaaa ttcatctaaa ttttgacaaa
     1621 aatgtactag atgtggaact ccagtgttgc aaagttgcca agtttttcct aattcttcaa
     1681 aagtattttg cacgcttttt attttgccta aagatacttc aactttatct tgatttacct
     1741 ttgcttttat tactcctgca ccagttaaaa aactcatgtt aggatttatt ttgttaatat
     1801 gatgtacaaa atgtgccgca gcccttgagc cattgccaca catagcagcc cttgagccat
     1861 cgttattata aaattcccat tcaaagtcgt atttttcatg aggtaatatc acgataaagc
     1921 catccgcgcc tataccctca taacgattac aaagttcttt agctaaagca cttctatctt
     1981 cttttctatc agcatttgtt atgacaaaat cattcccact tgcacaatat ttataaaatt
     2041 tcacattttt cctttagaaa tttcttgtat tactttaaca cattcttgcc taaaatcggc
     2101 ataagaatta gtatttttaa tgataaaatc tgctttttta agtttttctt caatatctat
     2161 ttgagaatca agtcttgctt ttgcagcttc taagctaagc ttatctcttt gcatgattct
     2221 tttaaggctt aattctttag gtgtgtaaat tacaatgact ttgcctaaat tttcataagc
     2281 accgctttca aaaaaaagag gaatttctac aaaaaaagct ttattttcct tatctagaat
     2341 ttgcatttgt tctaaaattt tagctcgaat tttaggatga gtgaaatttt ctaagatttt
     2401 tttagcttct ttgttgttaa aaacaatttc tccaaggatt tttctatcga ttttcttttc
     2461 ttttgtgagt aaatttttta aactaaaggg agaaaaaatc ttttcaagct ctaaagcatt
     2521 ttcatctaaa atttcatgag cgattttatc tgcactaatg cttttaaagc ctaaagaatt
     2581 cgctatttct ataaaggtgc ttttaccaca agcaattgaa gcggttacaa aaaaagcatt
     2641 tttcatctta tgccttatta aaactttttt cgttaaaata cctttttagt tcttaaagga
     2701 aaataaatga aaatttcata tgaagatgca ggcgtaagta tagataatgg aaatgccttt
     2761 gtagaggcta taaaaccttt ggttaaagaa acttttaatg ataatgttgt aggcggaatt
     2821 ggttcttttg ctggtgcttt tagaatgcca agtggtttta aaaagcctgt gattttaggt
     2881 gcaacagatg gggttggtac caagcttcgc ttggcaattg atgctaaaaa atatgatact
     2941 atagggcaag atttagtagc aatgtgtgtg aatgatttga tttgtaattt tgctacacct
     3001 ttgtttttcc tagattatta tgctacagtc aagctcgaag tagaagtagc aaaggctgtt
     3061 gtatcaggca ttgccaaggg atgtaagatg gcaaattgtg cattaatcgg cggagaaact
     3121 gctgaaatgc ctggaatgta tgcaaaagat gattttgatc ttgcgggttt tgcagtgggt
     3181 atggctgaag aagatgagat tgatagaagt aaatttgtta aaaatggtga tattttgttg
     3241 gcacttccta gttcaggact tcattcaaat ggctattctt tagccagaaa agtacttttt
     3301 gaaagtttaa aattaaaatt tgatgacaag atagagggta aaaatttaat cgatatttta
     3361 ttagaaccta caaggattta tgtgcgtgat tttcttacac taaagcctta tatcagtgct
     3421 ctagctcata ttacaggggg tggtttagta gaaaatttac cacgcgtttt acctagtggt
     3481 atgggtgcaa ctatacgcaa acatcatctt aaaactcctg aaatttttta tactatagga
     3541 caggctgtag aagaaagtga aatgtataga agctttaaca tgggagtggg tttagtaatg
     3601 gttgtagatc cttctaatgt aagtaaggtt ttagaaaatt cagatgcctt tattatcggc
     3661 gaaatttgca ttaatgaagg tattgtttta gagtgaaaag aatttatttt ttaagatatt
     3721 ttaagagtaa attaaaaaaa taataaggaa aagtgatgaa aaatattgtc tttcattcgg
     3781 atggttttgg agatttatta gtttgtttta aagctttgta tgctataaag caactctatc
     3841 cagagtat
//
LOCUS       DAEDTT010000119         3677 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.119, whole genome shotgun sequence.
ACCESSION   DAEDTT010000119 DAEDTT010000000
VERSION     DAEDTT010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3677
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.119"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..408)
                     /locus_tag="KLC54_001537"
     CDS             complement(<1..408)
                     /locus_tag="KLC54_001537"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177898.1"
                     /translation="MFASNKKFILFSLLCPLPLVIILFTLLYIRDPFWFFHPPYFRKE
                     TYMKDMRMQARGLILYKDFDSAIIGTSMLENTSAKEANKKLGGNWINLSLGGSTFALR
                     AVILDYLFKHKDIKNIIYSLDIRALNELETPKDK"
     gene            complement(418..1917)
                     /locus_tag="KLC54_001538"
     CDS             complement(418..1917)
                     /locus_tag="KLC54_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HBD9177899.1"
                     /translation="MLFSSFTFIFAFLPLTLVGFYILKALQYYTSAKIFLILASLFFY
                     AYFKIDYIFILTFSTLVNFFLANLILRKENNRAGYTLLYLGIIFNLCLLAIFKYTDFF
                     LENFNLFSKLAHLDFNIPLPHILLPLGISFFTFQQIAFLVDCYKKSNIEDLLENKKVD
                     FIDYCLFISFFPQLIAGPIVHHKEMMPQFHSLLNKEKALIDWKLIAKGLFIFSIGLFK
                     KVYIADSFASWANAGFTVVQNGNFLNIFEAWATSLSYTFQLYFDFSGYCDMAIGLALF
                     FGIALPVNFNSPYKALNIADFWRKWHITLGRFLKDYLYIPLGGNRFGKFINLRNLFIV
                     AFLSGVWHGAGWGFVIWGILHAIAMISHRIYSFWAKGKTFLNSKIYKIISWFITFNFI
                     NIAWIFFRSENLQGAINLLKSMFGVIWVELPLKFKAGLLFKKIGGNDTMVGFILVSFI
                     LCICFKNSINMLQDFKSSFKNSLIVMFLFYIALITLIATPYTEFIYFNF"
     gene            complement(1969..2919)
                     /gene="waaF"
                     /locus_tag="KLC54_001539"
     CDS             complement(1969..2919)
                     /gene="waaF"
                     /locus_tag="KLC54_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HBD9177900.1"
                     /translation="MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTAL
                     FREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLV
                     HLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP"
     gene            2978..>3677
                     /locus_tag="KLC54_001540"
     CDS             2978..>3677
                     /locus_tag="KLC54_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HBD9177901.1"
                     /translation="MPQLSIIIPLFNSCDFISRVLQSCINQTLKDIEILIIDDKSKDN
                     SLNMVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTPDACEI
                     VFKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEVFNQKEFLDFLSKQRHFCWSVWAKC
                     FRKDMILKIFEKVKIDERLSYGEDVLFCYIYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNQEILNQNYQDKKK"
BASE COUNT         1358 a          480 c          564 g         1275 t
ORIGIN      
        1 tttgtctttg ggggtttcaa gttcatttaa agctctgatg tctaaagaat aaataatgtt
       61 tttaatatct ttatgtttaa ataaataatc taaaattacc gctcttaatg caaatgtgct
      121 tccacctaaa gatagattta tccaattacc tcctagtttt ttgtttgctt ctttagcaga
      181 ggtattttca agcatagaag tgcctattat ggcagaatca aaatctttgt acagaatgag
      241 tcctctagct tgcattctca tatctttcat gtaagtttct tttctaaaat atggtggatg
      301 aaagaaccaa aaaggatcgc gaatataaag caatgtaaaa agaattatta cgagaggcaa
      361 aggacataat aaagaaaaaa gaatgaattt tttattagaa gcaaacaata tttttcctta
      421 aaaattaaaa tagataaatt cggtatatgg tgtagcaata agagtaatta aagctatata
      481 aaataaaaac attacaataa gggaattttt aaagctcgac ttaaaatctt gaagcatatt
      541 aatgctattt ttaaaacaaa tacatagtat aaaggagact aaaataaaac ctaccattgt
      601 atcatttccg cctatttttt taaataaaag ccctgctttg aattttaacg gcaattccac
      661 ccaaattacc ccaaacattg attttaagag gtttatagcc ccttgtaaat tttcgcttct
      721 aaagaaaatc caagctatat tgataaaatt gaaagtgata aaccaagata taattttata
      781 aattttcgaa tttaaaaaag ttttgccttt agcccaaaaa ctataaattc tatggcttat
      841 catagctata gcgtgtaaaa ttccccatat aacaaaaccc catccggctc catgccatac
      901 tccgcttaaa aaagctacga taaaaagatt tcgtagattg ataaattttc caaagcgatt
      961 tcctccaaga gggatgtata aataatcttt taaaaatctt cctaaagtaa tatgccattt
     1021 tcgccaaaaa tcagctatat ttaaagcttt atatggagaa ttaaaattta caggtaaagc
     1081 tataccgaaa aaaagagcta atcctatagc catatcacaa tatccactga aatcaaaata
     1141 gagttgaaaa gtatacgaaa ggcttgttgc ccaagcctca aaaatattta aaaaatttcc
     1201 attttgcaca actgtaaatc ctgcatttgc ccaagaagca aaactatcag ctatgtaaac
     1261 ttttttaaaa agtcctatag aaaatataaa caagcccttt gctattaatt tccaatcgat
     1321 taaagctttt tctttattaa gtaaagaatg aaattgcggc atcatttctt tatgatggac
     1381 tataggacct gcgataagtt gcggaaaaaa actgataaat aagcaataat ctataaaatc
     1441 aactttttta ttttctaata aatcctcaat attacttttt ttataacagt ccactaaaaa
     1501 tgcaatttgt tgaaaagtga aaaatgaaat tcctaaaggt agtaaaatat gtggtaaagg
     1561 aatattaaag tctaaatgag caagtttgga aaaaagatta aaattttcca aaaaaaaatc
     1621 tgtatattta aagattgcta gtaagcaaag gttgaagata atacctagat aaagtaaagt
     1681 atatcccgcc ctattatttt cttttcttaa gataaggttt gcaagaaaaa aatttaccaa
     1741 ggttgaaaag gttaagatga aaatataatc aattttaaaa taggcataaa aaaataaact
     1801 agctaatatt aaaaatattt ttgcacttgt ataatattgc aaagctttta atatgtaaaa
     1861 gcctaccaaa gttaaaggca agaaggcaaa aataaaagta aaagagctaa aaagcataaa
     1921 caaccttata aaattttaca atagtttttt attctaacta aaattttttt atggagtgct
     1981 taatttttta atttcttcta tcaccttttc aggctttaga tctttcatgc atttatggtg
     2041 ctttaaagga caggtttttt gcatacaagg catacaagct agatctaaat gcactaattt
     2101 tgcgttttga ttttgccaag gtgaagtttg agtaaatttc gtagggccaa aaatagccac
     2161 ggtttttatc ttataaaccg tacttatgtg cataggacca ctgtcatttg tgatgaaaag
     2221 atcgcaaaaa gcgatatttt gacaaagggt tttgatggtg gttttattgc aaagattttt
     2281 tacttttatg ttttgttctt ttaaaatttg ataaatttca ttacaaagtt cttgttcggc
     2341 ttttcctgcg ccaaagatta aaatttcatg actttggctg aaatttaaag ccactttagc
     2401 aaaataactc gcatcccatc tttttgcact tccaaagctt gcgccagggt tgagtcctag
     2461 aattttttta ccatttttta agataagagg gttttgaaat tttagcttaa agggaagctt
     2521 taagtcttta aaatgagctt ttatactaag tgagttttct ataaaataaa ggtattttaa
     2581 aacttgatgt tcttctttgt gcttgttttt gtcaaaaaaa tatctttgtt ttgttttgag
     2641 aatatgcaag ataatcttag aagaaaacgc agatctaaaa gcaaagctaa gatcgatttt
     2701 accaagttct ttgcgtaaag atagggcttg tttgtagcgg gtttgtttat tttctatgat
     2761 gattttagaa ttaggaaatt ccctaaaaag tgctgtggaa accaaagagc cataaaggat
     2821 aaattgggta tttttaaaat gttcttttat agcgtataaa gcaggtgaag ccatcactgc
     2881 atcgcctagc caagtgggaa ggtgtataaa aattttcata aatttcctaa actttgatag
     2941 aattgttttt attattttaa caaaatttag gaaaaatatg ccacaacttt cgatcataat
     3001 cccgcttttt aattcttgcg attttatttc aagggttttg caaagttgta taaatcagac
     3061 tttaaaagat attgaaattt tgattatcga tgataaaagt aaagataata gtttaaatat
     3121 ggttttagaa tttgctaaaa aagatccaag gataaaaatc tttcaaaatg aagaaaattt
     3181 aggcactttt gcaagtagaa atttgggggt tttgcattct agttctgatt ttataatgtt
     3241 tttagatagt gatgattttt taacacctga tgcttgtgaa atagtattta aagagatgaa
     3301 aaaaggtttt gatttgcttt gttttgatgc ctttgtacat agggtaaaaa ccaaacaatt
     3361 ttatcgtttt aaacaagatg aagtttttaa tcaaaaggaa tttttagatt ttttaagcaa
     3421 acaaaggcat ttttgctggt cggtttgggc gaagtgtttt agaaaagata tgatcttaaa
     3481 aatttttgaa aaagttaaaa tcgatgagcg tttgagttac ggcgaagatg tgcttttttg
     3541 ttatatttat tttatgtttt gtgagaaaat agctgttttt aaaacttgca tttatcatta
     3601 tgaatttaat ccaaatggaa gatatgagaa taaaaatcaa gaaattttaa atcaaaatta
     3661 tcaagataaa aagaaaa
//
LOCUS       DAEDTT010000120         3551 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.120, whole genome shotgun sequence.
ACCESSION   DAEDTT010000120 DAEDTT010000000
VERSION     DAEDTT010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3551
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.120"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            109..900
                     /locus_tag="KLC54_001541"
     CDS             109..900
                     /locus_tag="KLC54_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HBD9177902.1"
                     /translation="MKSRDKKDLILDSIIQTYLLDNVPIGSNELNLNLCIPASTIRVY
                     LKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWKKEQDQDINIKSENFLKELSKEFE
                     IYCLVYGGRSLVLKEVLDLNAKFIVLDFKEEELVLKYEKEAWNFLQSLIGLDLFSIEK
                     IALRVHFMDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCGVHRYFKESLEF
                     EPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            897..1427
                     /gene="grpE"
                     /locus_tag="KLC54_001542"
     CDS             897..1427
                     /gene="grpE"
                     /locus_tag="KLC54_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HBD9177903.1"
                     /translation="MSEQKQEFENENAENSEHLQDENLQNIEDVEQNRLQKDYDELKD
                     KYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAINVECHDEISLKI
                     KEGVQNTLDLFLKKLEKHGVALIKEEKEFDPNLHEAMFHVDSQNHQSGEVVTVLQKGY
                     KIADRVIRPTKVSVAK"
     gene            1450..3321
                     /gene="dnaK"
                     /locus_tag="KLC54_001543"
     CDS             1450..3321
                     /gene="dnaK"
                     /locus_tag="KLC54_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HBD9177904.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVTDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLANEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIESKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
BASE COUNT         1354 a          449 c          712 g         1036 t
ORIGIN      
        1 aaaattaagt atattttttt atatttatac ttgacaaaat aacactcaat gttgtataat
       61 acttctagca atcaaaaaat agagtgctaa aaatttaagg aaagagctat gaaaagccga
      121 gataaaaagg atttgatttt agattctatc atccaaactt atcttttaga taatgttcct
      181 attggttcaa atgaattgaa tttaaatctt tgcatccctg cttcaactat acgcgtctat
      241 cttaaaaggc ttagcgacga gggtttgatc actcagcttc atataagtag tggtagaatt
      301 cctactattt tgacaatgca aaattactgg caaagttttt ggaaaaaaga acaagatcaa
      361 gatatcaata tcaaaagtga gaatttttta aaagagttga gtaaagaatt tgaaatttac
      421 tgtcttgttt atggtggtag aagcttagtg cttaaagaag tgcttgatct aaatgctaag
      481 tttatagtgc ttgattttaa agaagaagag ctcgttttaa aatatgaaaa agaagcatgg
      541 aattttttac aaagtcttat aggattggat ctttttagta tagaaaaaat agctttgagg
      601 gttcatttta tggatcttgt agaaaaaata gctagcttaa ggcaaaattt gatttgctat
      661 agaagcaatg aagaaagagc ttatcaaatt tatcaaaatg atgaatttgt taagctctta
      721 gattgcggag ttcatcgtta ttttaaagaa agtcttgaat ttgaaccttt atttaaagaa
      781 ggttttatgg ggcttaaggt ggatgcgcag tttttgggcg aagatgtaaa tattatctta
      841 gcaggtagtg tttatacgga ttataaaaaa atattacaat acataaagga ggcggcgtga
      901 gcgagcaaaa gcaagaattt gaaaatgaaa acgcagaaaa ttctgaacat ttgcaagatg
      961 agaatttgca aaatatcgaa gatgttgagc aaaacagatt gcaaaaagac tatgatgaat
     1021 taaaagacaa atatatgcgt gcaaacgctg aatttgaaaa tattaaaaaa agaatggaaa
     1081 aagaaaagct aagtgctatg gcttatgcaa atgaaagctt tgcaaaggat ttgcttgatg
     1141 ttttggatgc tttagaagca gctattaatg tcgaatgtca tgatgaaatt agcttaaaaa
     1201 tcaaagaagg agtgcaaaac actttagatt tgtttcttaa aaaacttgaa aagcatggag
     1261 tggctcttat taaagaagaa aaagagttcg atccaaattt acatgaggca atgtttcatg
     1321 tagatagcca aaatcatcaa agtggtgaag tggttaccgt gcttcaaaaa ggctataaaa
     1381 tagccgatcg cgtaatccgc ccaaccaaag ttagtgtagc aaaataaatt ttaataaaaa
     1441 ggataaaaaa tgagtaaagt tataggtata gatttaggaa caaccaattc ttgtgttgct
     1501 gtgtatgaac gcggtgagag taaagtaatt ccaaataaag aaggtaaaaa tacaactcct
     1561 tctgtggtag cttttacaga taaaggcgag gttttagtag gagatagtgc aaaacgccaa
     1621 gcggtaacta accctgaaaa aactatttat tctattaaaa gaattatggg tttgatgatc
     1681 aatgaagacg cggctaaaga agctaaaaac agacttcctt atcatatcac tgaaagaaat
     1741 ggtgcttgtg ctattgagat cgcagggaaa atttatactc cgcaagaaat ttcagcaaaa
     1801 gttttgatga aattaaaaga agatgcagaa gcttttttgg gtgaaagtgt tactgatgcg
     1861 gtgattactg tgcctgctta ttttaacgat gcacaaagaa aagcgacaaa agaagcggga
     1921 acgatagcag gacttaatgt attaagaatt atcaatgagc ctacttcagc agctctagct
     1981 tacggacttg ataaaaaaga tagtgaaaaa attgtggttt atgatctagg tgggggaact
     2041 tttgacgtta ctgtgcttga aacgggcgat aatgtagtag aagttttagc aacaggtggt
     2101 aacgctttct taggtggtga tgattttgat aataaactta tagattttct agctaatgaa
     2161 tttaaagatg aaacaggcat agatcttaaa aatgatgtta tggctttgca acgcttgaaa
     2221 gaagcagcag aaaatgctaa aaaagaatta agttcagcta atgaaactga aattaattta
     2281 ccatttatca cagcagatgc aagtgggcca aaacatttgg ttaaaaaact tactagagct
     2341 aaatttgaag gtatgattga ttctttagta gctgaaacca tcactaaaat caatgaagta
     2401 gtaagcgatg cagggcttaa aaaagatgag atcaaagaaa tcgttatggt agggggctct
     2461 actcgtgttc ctttagtgca agaagaagtg aaaaaagcct ttaataaaga tcttaataag
     2521 tctgtaaatc ctgatgaagt tgtggctatc ggtgcggcga ttcaaggtgc ggttataaaa
     2581 ggtgatgtaa aagatgtgct tttacttgat gttactccgc tctctttggg tatagaaact
     2641 ctaggcgggg taatgactaa gattatcgaa aaaggtacaa ctattccaac taaaaaagag
     2701 caagttttct caaccgctga agataatcaa agtgctgtaa ctatcaatgt tttacaaggg
     2761 gaaagagaat ttagtcgtga taataaatct ttaggaaatt ttaatcttga aggaattcca
     2821 ccagcaccac gcggtatgcc acaaatcgaa gttacttttg atatcgatgc aaatggtatt
     2881 ttaactgtta gtgcaaaaga taaagcaaca ggtaaggctc aagagatcaa aatcacaggt
     2941 tcaagcggac ttagcgagga agagattaat aacatggtaa aagatgctga acttcacaaa
     3001 gaagaagaca aaaaacgcaa agaagctgta gatgctagaa atgcagctga tagcttggcg
     3061 catcaagtag aaaaatcttt aagtgagttg ggtgaaaaag ttgccgctgc tgataaagaa
     3121 aatattcaaa aagctcttga tgatttgcgt gagactttga aaaatcaaaa tgcaagcaaa
     3181 gaagagattg aaagcaaaat gaaagcttta agcgaagttt ctcataagtt agccgaaaat
     3241 atgtataaaa aagatgagcc aaacacagca aatgataaaa agaaaaaaga tgacgatgta
     3301 atcgacgctg aagttgagta atcttaaaat ctctattcaa gcctttttaa aaggcttgaa
     3361 aattttttaa aattttaaag aaatgacaaa atctgtaaaa cataattctt ttattagctt
     3421 gctacctaat ttttcattga ttttttaacc aattcttttt gaagttctaa ttcaaatcag
     3481 acaattcatt ttagtgtaag caaactaaaa aattaacaat aaaataaaat taatctaaaa
     3541 actttttaga t
//
LOCUS       DAEDTT010000121         3548 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.121, whole genome shotgun sequence.
ACCESSION   DAEDTT010000121 DAEDTT010000000
VERSION     DAEDTT010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3548
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.121"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..204
                     /locus_tag="KLC54_001544"
     CDS             <1..204
                     /locus_tag="KLC54_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HBD9177905.1"
                     /translation="DTLILFRKGEVTLEILPKLVEKNIKNLWLQLGISNETAKEECKK
                     LDINFIQNRCIMLEYPYFKTKEK"
     gene            204..1415
                     /locus_tag="KLC54_001545"
     CDS             204..1415
                     /locus_tag="KLC54_001545"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HBD9177906.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSAEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEST
                     PLLKVSATKALGAEVILKGDNFDEAYVFATSYAKENNLSFIHPFEDEFVMAGQGTLML
                     EMLDEISDLDMIIAPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVATLLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIHVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(1412..2137)
                     /gene="truA"
                     /locus_tag="KLC54_001546"
     CDS             complement(1412..2137)
                     /gene="truA"
                     /locus_tag="KLC54_001546"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HBD9177907.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(2134..3159)
                     /locus_tag="KLC54_001547"
     CDS             complement(2134..3159)
                     /locus_tag="KLC54_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HBD9177908.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            complement(3159..>3548)
                     /locus_tag="KLC54_001548"
     CDS             complement(3159..>3548)
                     /locus_tag="KLC54_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HBD9177909.1"
                     /translation="FAFFYAFRESEILHFLIFKEFSGGFLLNAFSFGGFVFLLKSLVF
                     FLMNFRKKDEILENLGDADIIIMSCIGGILGFEYGFLVLLIASILTLPFFIFFKIKAI
                     KEQELAMIPFLNIAFVAVLFYKNLGLF"
BASE COUNT         1388 a          584 c          496 g         1080 t
ORIGIN      
        1 gatacactta tactttttag aaaaggcgaa gtgacactag aaattcttcc taagcttgtt
       61 gaaaaaaata ttaaaaacct atggcttcaa cttggtatta gtaatgaaac agccaaagaa
      121 gaatgtaaaa aattagatat aaattttata caaaatcgtt gcattatgct agaatatccg
      181 tattttaaaa caaaggaaaa atagtgttag agcttaataa aatttacaaa gcaaaacaac
      241 aaatttcagg gtttgtaaac aaaactcctt tcatatactc ttctttttta agtgatattt
      301 gtcaaagtga gatttatctt aaaaatgaaa atttacaaat tacaggtgct tataaaattc
      361 gtggagctta taataaaata gccaatctta gcgctgaaca aaaacaacac ggagtcattg
      421 cagcaagtgc aggaaaccat gctcaaggcg tggccattag tgcaaaaaaa tttggcatta
      481 aagcagttat tgtaatgcca gaatccactc cgctcttaaa agtttctgct acaaaagcct
      541 taggagcaga ggtgatactc aaaggggaca attttgatga agcttatgtc tttgcaacct
      601 cttatgctaa agaaaataat cttagtttta tccatccttt tgaagatgaa tttgtaatgg
      661 caggacaagg aactttgatg cttgaaatgc ttgatgaaat aagcgatctt gatatgatta
      721 tcgcacctgt tggaggtgga ggacttataa gtggtatcgc aagtgcagct aaacaaatca
      781 atccaaacat taaaatcatc ggagttggag ccaaaggagc tcctgcaatg tatgaaagtt
      841 ttcatgccaa aaaaatcaaa aatgcaaaaa gcgtacgcac tatagccgat ggtattgctg
      901 tgcgtgatgc aaatcctatt aattttaata ttattttaga atgcgtagat gattttatcc
      961 aagttgatga tgaagaaatc gctaatgcgg tattgttttt acttgaaaaa cataaaatca
     1021 tagttgaagg cgcaggagct gcgagtgtag ccaccctact tcatcaaaaa ataaatacac
     1081 aaaatcataa aaaaattggc gtagttttaa gcggaggcaa tatcgatgca caaatgctaa
     1141 atatcatcat agaaaaaggt ttatttaaat cttacagaaa aatgcaaatt catgttactt
     1201 tagtagataa acctggggca ttattacacc ttacagacag cttaaaaata gccaatgcaa
     1261 atatagtaaa aatcgactat gatagatttt ctaccaagct tgattatggc gatgcgatga
     1321 tttcaattac cctagaaacc aaaggtaaag aacatcaaga agaaataaga aaaattttaa
     1381 cccaaaaggc ttttaatttc tatgaaagtt tttaataaca tatacggctt aaataaagcc
     1441 catttggcgg tgctaaaaag tgattgtatt gctttttagc ctcaatctgt tctttgagtt
     1501 ctttttcact catttttcct tctaaaactt ttaaaacgct tgctacgctt aatctaattt
     1561 gccctcttaa aaaaccatta gctttaaaat gaaaaatgct aaaatcttta taagcataag
     1621 ctctagcaat aaaaatttct cttaaagtcg ttttattatc ccctccactt ttgcaaaaaa
     1681 actttaaatc cttttttcct acaaaaaaac ccaaaagctc attagcttta cctaggtcaa
     1741 atttaggata aaaatgtaca taagaagcca taaaaggact ataagaagcg tgagaaaata
     1801 tatagcggta ttctctactt tttacatcaa atcttacttc aaaatcatct tttacttttt
     1861 caattttttt gatatggata aaaggatggg aaaatttatt aagttgtttt tgaagatatt
     1921 ctaaatttgt aaaataatct ccacactcca cactagctac agcatagctt gcatgtactc
     1981 ctttatctgt acgagaagcc atcaaaagag gtgaaaaaat acccaaatgc gataaggccc
     2041 cacttaaagc atcttgaaca ccttttttat gaggctgagt agcagaacct aaaaaagcag
     2101 agccatcata agaaaatata atttttattt tcatcaatat cgactcaaaa tcattttctt
     2161 aaaacaataa gccgaaacaa ataaacttaa agaaaaaatt ccaagacaag ccaaaattgg
     2221 aggttgagaa aaagaactta aaagtccaaa atatatagca atcactccaa acatacctaa
     2281 atacacatag cctttttcat aacgataagt aaccaaacca aaacaaagcg caaaaagcgt
     2341 actagcaagt ggaaacaagg ctatagttgt ataaatcaca aattctcttg ctctttgtgg
     2401 attttcgttt aaatcattcc agtattcata aaatttcttt gtttgaagat tgtctgtatt
     2461 aaactgagta tttactacta aagtgtcaaa ttctccacta aaaatacttt gaccttgctc
     2521 aaaattatac attttgcctt gatttaagct aaaagcaaag ctatcatctt ttctttgcac
     2581 atgcgcttct ttggctatga taagttgttc tttatcatct gctttatgtt tagggcgata
     2641 cataattatg ttttcatact tatcactatc ttgtttttct ataaaaatca tccagtctaa
     2701 aaatttttgt ccaaattctc ctgttttgta gttaaatttc acttgagtgc ttttatagtt
     2761 tacaaagtta tcctgaagtt caaatactat aggtatcatt accaaagcta caacaagcat
     2821 aaaagcacta atcaagcttg caattttaag gaaaaatttt gccaaaatca ttggtgaaaa
     2881 tcccaaagta aaaagcacta tgctttcatt ttccttagaa agcctaaaca aagccaaagt
     2941 taaagaaata aaaaaagata taggcaaggt aaaaattaaa attctaggca acataaaccc
     3001 ataaagcttt aaaagatcca aaaaactaat ctctatgctt gaagtaagtt ttgcaagttg
     3061 aataaaaaac accatagata caatagcaaa aagtacgaaa aatatagaca aattcgtact
     3121 taaaaattga tttaaaacat atcttaaact aagcttcatt agaataatcc taagttttta
     3181 taaaataaaa ctgccacaaa agcgatattt aaaaagggta tcatagcaag ttcttgctct
     3241 tttattgctt taattttaaa aaaaataaaa aaaggcaaag ttaaaataga agctataagt
     3301 aatactaaaa atccatactc aaaacctaaa attccaccta tacaagacat aatgataata
     3361 tcagcatcac ccaaattttc taaaatttca tctttttttc ggaaattcat tagaaaaaaa
     3421 accaaacttt ttaataaaaa aacaaatcct ccaaaactaa aagcatttag caaaaaacct
     3481 ccgctaaact ctttaaaaat caaaaaatgt aaaatttcac tttccctaaa ggcgtaaaaa
     3541 aaagcaaa
//
LOCUS       DAEDTT010000122         3497 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.122, whole genome shotgun sequence.
ACCESSION   DAEDTT010000122 DAEDTT010000000
VERSION     DAEDTT010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3497)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3497)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3497
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.122"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            183..1991
                     /locus_tag="KLC54_001549"
     CDS             183..1991
                     /locus_tag="KLC54_001549"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HBD9177910.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKNLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHILYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEVATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRTAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            1988..2506
                     /locus_tag="KLC54_001550"
     CDS             1988..2506
                     /locus_tag="KLC54_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HBD9177911.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            2545..>3497
                     /locus_tag="KLC54_001551"
     CDS             2545..>3497
                     /locus_tag="KLC54_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HBD9177912.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNKGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKHYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDASMLAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKPKFAQDALFELINDLKARVILLSYNCEGFVKK"
BASE COUNT         1293 a          402 c          694 g         1108 t
ORIGIN      
        1 tatttgtatt atagtgggat tttaaatgct ggaagtgaat ttaagctata aataaatatt
       61 aaacttattc taagattttt tttaaaaata agctgaattt caaaaataat taagtcttag
      121 aaagttaaaa ttagaacttt ataaacactc acagggtaag tgagcgacaa agggttaaaa
      181 atatggaaaa agaagttatt gcgtatttgg acaatgagac aataattgac tctcaaagtg
      241 tgaaaaatac aaatttaaaa gaaatttatt ttgataattc taaagaaagt ttagaggtaa
      301 tccgtcattc ttgtgcgcat ttaatggcac aggcgattaa gaatttgtat cctgaagcta
      361 aatttttcgt tggtcctgtt atagaagatg gattttatta tgattttcgt gtagaaagta
      421 agattggcga agaagattta gtaaaaattg aaaaaaagat gaaagaactt gctgaagcaa
      481 agattgaaat ttcaaaatat gaaatcacaa aaaacgaagc tttggctaaa tttcaaaatg
      541 atgatttaaa acaagaagtt ttattgcgta ttcctgatgg agctgtaagt atttataaac
      601 aaggtgaatt tgaagatttg tgtcgtggtc ctcatgtgcc aaatacgaaa tttttacgct
      661 tttttaaact cactcgtgtt gcaggagcgt atttgggtgg cgatgaaaaa agagaaatgc
      721 ttactcgaat ttatgggact gcttttgcag ataaggaaag tttaaaagag tatttaacca
      781 ttattgaaga agctaaaaaa cgcgatcata gaaagcttgg aacagagctt aaacttttta
      841 cttttgatga tgagatcgga ggtggtcttc ctatctggtt gagtaatggt gcaagactta
      901 gatctaaact tgaacatata ctttataaga tccatcgttt gcgtggttat gagcctgtgc
      961 gtggacctga gcttttaaaa gcagatgcat ggaaaatcag tgggcattat gcaaactata
     1021 aagaaaatat gtattttaca caaattgatg aacaagaata tggtattaag cctatgaact
     1081 gtgtggggca tattaaaatt tatcaaagtg atgtaagaag ttatcgtgat ttgcctttga
     1141 aattttttga atatggcgtg gtgcatcgtc atgaaaaaag tggggttttg cacggacttt
     1201 ttagagtgag agaattcact caagatgatg cacatatttt ttgtatgcca agtcagatta
     1261 aagagcaggt tttagaaatt ttagcttttg tggataattt gatgaaatta tttgatttta
     1321 gctatgagat ggaaatttca actaaacctg aaaaagccat aggtgatgat gaaatttggg
     1381 aagtggcaac taaggcttta aaagaagctt tagatgaaca aggtttaaaa tacggtattg
     1441 atgaaggtgg cggggctttt tatgggccaa agatcgatat taaaatcacc gatgccttaa
     1501 aaagaaagtg gcaatgtgga actatacaag tagattttaa cctaccaagt cgttttaaac
     1561 tcgaatatac tgatagtgat aatgaaaaaa aacaacctgt aatgttgcat cgtgcgattt
     1621 taggttcttt tgaaagattt ataggaattt taaccgagca ttgtgcgggt gagtttccat
     1681 tttttatcgc accaactgcg gtgggtatag tgccaatagg cgaagcacat attgcttacg
     1741 caaaagaaat tcaaaaagaa ttattagagc ttaatatcga tagcgaggtg tatgaaaaaa
     1801 atgagagttt aagtaagaaa atacgcacag ctgaaaaaca aaaattacct atgattttag
     1861 ttttaggcga tgatgaggtg gcaaagcgta gcgttgcttt aagagataga agagctaaag
     1921 aacaaaaaaa tcttagctta gatgaattta ttaaattagt taaggagaaa atgagtgagg
     1981 tacacttttg agtaaagaaa aagaagtatt gctcaatgaa gaaataagag cggatgaaat
     2041 cagatgtgtt ggcgatgatg gcaaggttta tggtattatt agtagtgatg aagctttaga
     2101 aattgcaaat cgtttaggac ttgatcttgt aatgatagct gcagatgcta agccacctgt
     2161 ttgcaagatc atggactatg gtaaattccg ttatcaacaa gagaaaaaac aaaaagaagc
     2221 aaagaaaaaa caaaaagtga ttgatataaa agaaatcaaa ctttctgtaa aaattgctca
     2281 aaatgatatt aactacaagg taaaacatgc tttagaattt ttagaacaag gtaaacatgt
     2341 gagatttcgt gtgttcttaa aaggacgtga aatggcaact cctgaagcag gtgtagcttt
     2401 gcttgaaaaa atttggacta tgatagaaaa tgaagctaat cgtgacaaag agccaaattt
     2461 tgaaggtcgt tatgtaaata tgcttgtaac tccaaaaaaa gcttaatcca cttttgtgga
     2521 taaggctttt aaaggtttta aattttgaaa gaaaatcctt cttttttaaa agagcaaatt
     2581 ataacttatc ttggaaataa aagagcgctt ttaagttttt taaataaggg ctttaaggta
     2641 gctaaaaaag aacttggtaa agataaattt agtttttgtg atatatttag tggctcaggt
     2701 gttgtaagtc gttttgcaaa agcgcactca aattatattt tagccaatga tttagaggat
     2761 tattcaaaac tcatcaatga gtgttatctt gccaataaag acaaagattt acttcaaaat
     2821 ataaaaaagc attataaaaa tttaatccaa aatttagatt ttcaaaaagg ttttatcagt
     2881 gagctttatg ctccaaaaga tgatgatgat attaaaaaaa atgaaagggt tttttatact
     2941 tttaaaaatg ctttatatct tgatactata aggcaaaaaa tcgaaaatga aattccaaaa
     3001 gaattgaggc atttctttat agctcctttg atttatgaag ccagtgttca ttcaaatact
     3061 agtggagttt ttaaaggttt ttataagggt aaggatggca tcggaaaatt tggtggcgaa
     3121 ggacaaaatg cacttaaacg aattaaagga gaaatagagc ttaaaatgcc tattttttca
     3181 aatttttctt gtgaatttga agtgatgcaa aaggatgcaa gtatgcttgc aaaagaactt
     3241 gatttttttg atgtagtgta tcttgatccc ccttataatc aacaccctta tagttctaat
     3301 tattttatgc taaatttaat cgcaaattat aaaaaacctg aagaaatttc taaaatcagt
     3361 ggcattccaa aagattggaa ccgtagcact tttaataagc caaaatttgc ccaagatgct
     3421 ttatttgaac ttattaatga tttaaaagca agagtgattt tactttctta taattgtgaa
     3481 ggttttgtaa aaaaaga
//
LOCUS       DAEDTT010000123         3411 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.123, whole genome shotgun sequence.
ACCESSION   DAEDTT010000123 DAEDTT010000000
VERSION     DAEDTT010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3411
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.123"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1149
                     /locus_tag="KLC54_001552"
     CDS             <1..1149
                     /locus_tag="KLC54_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HBD9177913.1"
                     /translation="FHSIKSGTKVFDWIVPDEWNAKEAYIITPEGEKICDFKKHNLHL
                     LNYSEAIDQEIELEELQDHLYSIEEMPDAIPYVTSYYKRRWGFCLTHNERKKLKKGKY
                     KVYIDAKHDENGVLDYADFILPSTQNSKDEILISTYLCHPSMANNELSGPVVAIFLAK
                     WLLNLKERKYNYRFVIIPETIGSIVYLSKHLEHLKKHVKAGFVLSCIGDDHAYSLIHT
                     PKENTLSDKVALHTLKNKENFKAFSFLNRGSDERQYNAPLANLGIVGVCRTRYGDYDG
                     YHNSKDDLNFISEKGLMGGLQSMQEIILNLEINAIYENTIVCEPNLGKRGLYHTINKG
                     VKQKPISADFLAYCDGQNDIIDIANILNMQAYEFKELLEKIKFYGLVK"
     gene            1146..1931
                     /locus_tag="KLC54_001553"
     CDS             1146..1931
                     /locus_tag="KLC54_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside N(3)-acetyltransferase"
                     /protein_id="HBD9177914.1"
                     /translation="MKYFLEHNDKKYSDKDLIDAFYQLGIKRGDILCVHTELFNFGVP
                     LLSRNEFLQTILNCFFEVIGKEGTLIMPTFTYSFCKNEVYDKLNSKCTVGTLNEFFRK
                     QQGVKRTNDPIFSFAIKGAKEELFLKNTTSCFGENSVYDTLVKENGKIILLGTKIAGY
                     TFTHFIEEKIKVPYRYFKEFKGKIILENKMPKEIVINYYVRDLEENSNLDVYKQIEIL
                     KQNDNFKLQQFSNSCIVLINSKAYLEDTMQALNQNLKCLLMEP"
     gene            1932..>3411
                     /locus_tag="KLC54_001554"
     CDS             1932..>3411
                     /locus_tag="KLC54_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HBD9177915.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFAKERKEITYKNFDLFSKK
                     LASEILRNLGNDNPIQVPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKNLNFNLNLPTLYTQDFEGFDINESLLKNAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNTLKKILFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKSKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNKFGELLCYGRADNQIKYMGHRIELGEIESVINSHESVKNSACIFKEDI
                     ICFYESKDELDLKAFLKDKLPSYMIPKNFIKIDKFKLNQNGKI"
BASE COUNT         1297 a          488 c          529 g         1097 t
ORIGIN      
        1 tttcactcta taaaaagtgg tacaaaggtt tttgactgga tagttcctga tgaatggaac
       61 gccaaagaag cctatatcat cactccagaa ggagaaaaaa tttgtgattt taaaaagcat
      121 aatctacacc ttctaaacta tagcgaagct atcgatcaag aaatcgaact agaagaactt
      181 caagatcatc tttactccat agaagaaatg cctgatgcta ttccttatgt aacgagctat
      241 tataaaaggc gttggggatt ttgtctcaca cataatgaaa gaaaaaaact caaaaaaggc
      301 aaatacaaag tctatatcga tgcaaaacat gatgaaaatg gggttttgga ctatgctgat
      361 tttatcctac ctagcacgca aaactcaaaa gatgaaattt taatttcaac ctatctttgc
      421 cacccttcca tggcaaataa tgagcttagt ggccctgtgg tggctatttt cttagcaaaa
      481 tggcttttga atttaaaaga aagaaaatat aattaccgct ttgtcatcat ccctgaaacc
      541 ataggctcta tagtctatct tagtaaacat ttagaacatt taaaaaaaca tgtcaaagca
      601 ggctttgtac tttcttgtat aggcgatgat catgcttact cactcataca cacacctaaa
      661 gaaaacactc taagcgataa agtcgccctg catacgctta aaaataaaga aaatttcaaa
      721 gcttttagtt ttttaaatcg tggaagcgat gaaagacaat acaatgctcc gcttgcaaat
      781 cttggcatag taggagtatg tcgcacaagg tatggtgatt atgatggata tcataactca
      841 aaagatgatc tcaattttat ctctgaaaaa ggtttaatgg gcggacttca aagtatgcaa
      901 gaaataattt taaatctaga aatcaacgct atatatgaaa acaccatagt atgcgaaccc
      961 aatcttggca aaagagggct ttaccacact ataaataaag gagttaaaca aaaacctata
     1021 agtgccgatt ttctagcata ctgtgatgga caaaatgaca ttatcgatat agccaatatc
     1081 ttaaatatgc aagcttatga atttaaagaa cttttggaaa aaataaaatt ttatggacta
     1141 gtaaaatgaa atatttttta gaacacaacg acaaaaaata ctccgataaa gatttaatag
     1201 atgcttttta tcaactaggt ataaaaagag gcgatatttt atgcgtacat acagaacttt
     1261 ttaactttgg cgtgcctttg ctttctagaa atgaattttt acagactata ctcaattgct
     1321 tttttgaagt tataggcaaa gaaggcactt tgatcatgcc aacctttact tatagttttt
     1381 gcaaaaatga agtttatgac aaacttaatt ctaagtgcac cgtaggaaca ttaaatgaat
     1441 tttttagaaa acaacaagga gtaaaacgca caaatgatcc tatattttct ttcgctataa
     1501 aaggagcaaa agaagaattg tttttaaaaa acacaacaag ttgctttgga gaaaattctg
     1561 tatatgacac tttagttaaa gaaaatggca aaataatact tcttggcaca aaaattgcag
     1621 gatatacttt tactcatttt atcgaagaaa aaattaaagt accttataga tattttaagg
     1681 agtttaaagg taaaattata ttagaaaaca aaatgccaaa agaaatagta ataaattatt
     1741 atgtaagaga tttagaagaa aattcaaatt tggatgtgta taaacaaatt gaaattttaa
     1801 aacaaaatga taattttaaa ctccaacaat ttagtaattc ttgcattgtt cttattaatt
     1861 ctaaagctta cctagaagac actatgcaag ctttaaacca aaatttaaaa tgtttattaa
     1921 tggagccata aatgacaacc cacatctatg atttcctaga aaaaagttta atcaaattta
     1981 gcgaaaaaac tgcttttgta gaaccttttg ccaaggaaag aaaagaaatc acttataaaa
     2041 actttgatct tttttctaaa aaactagcca gtgaaatttt gagaaatcta ggaaatgata
     2101 atcctatcca agttcctgtt ttaatcatct tacctaaagg gattgattgt ttgatttcat
     2161 tttttggagt ggcattaagt ggaaattttt ataccctttt agatgagaaa agtcctaaag
     2221 aaagagtaga aaaagttata gaagttttaa aacctaaact ttttatcact tcaaagaact
     2281 taaattttaa tttaaattta cctacacttt atacgcaaga ctttgaaggt tttgatataa
     2341 atgagagttt gctaaaaaat gcaaaagaaa aacacataga tactaattta ctttatgttt
     2401 tctttactag cgggagcaca ggcattccta aaggagtaag catagctcat aaaagtgtga
     2461 ttgattatac tttttgggta tgtgagactt ttaaatttga tgagaatgaa attttagcca
     2521 atcaagcgcc attttatttt gacaatagca ttttagatat tttttcaagt gtaaaatcag
     2581 gagcgacttt acatctttta cctaatcatc tttttgcctt tccaaataaa attttagaat
     2641 gccttgaaaa agaaaaagta agcactatat tttgggtacc ttcggtgctg atttattttg
     2701 caaatactga agctttgaat aattttagtt taaacacctt aaaaaagata cttttttgtg
     2761 gtgaaatcat gcctaataaa cagctaaata tttggcgtaa acacttaccc aatgctttat
     2821 ttgcgaacct ttatggtcca acagaaatca ctgatgtatg ttctttttat atcatcaatc
     2881 gcacttttaa agatgaagaa cttttaccta taggtaaagc atgtaaaaac acagaacttt
     2941 tagtttttga tgaaaatatg aatttcataa gccctaaaca aataggtgtt aaaggagagc
     3001 ttttcgtgcg tggaacttct ttgtctttag ggtattataa tgacaaagaa aaaagcaaac
     3061 aagcttttat tcaaaatcct ttgcatgata attatttaga tttactctat aaaacaggtg
     3121 atattgtttc ttataataaa tttggcgaac ttttatgcta tggaagagca gataatcaga
     3181 tcaaatatat gggacataga atagagcttg gagaaataga aagtgtgata aattctcatg
     3241 aaagtgtaaa aaacagtgct tgtattttta aagaagatat tatttgtttt tatgaaagca
     3301 aagatgagct tgatcttaaa gcttttttaa aagataaatt accttcttat atgatcccaa
     3361 aaaattttat taaaatcgat aaatttaagc ttaatcaaaa tggtaaaatc g
//
LOCUS       DAEDTT010000124         3376 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.124, whole genome shotgun sequence.
ACCESSION   DAEDTT010000124 DAEDTT010000000
VERSION     DAEDTT010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3376
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.124"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..162
                     /locus_tag="KLC54_001555"
     CDS             <1..162
                     /locus_tag="KLC54_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177916.1"
                     /translation="NIVNGDILINFIGRSITDDSRFRVEFLNNNAPTGFFFDFDVTMQ
                     KNFQTGNTH"
     gene            248..667
                     /locus_tag="KLC54_001556"
     CDS             248..667
                     /locus_tag="KLC54_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HBD9177917.1"
                     /translation="MKKILLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTI
                     FNNTDKDIALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYHI
                     MLLKLKKPIIKDTKVNLDLKFNNHKIIELKNIDSKEF"
     gene            671..1123
                     /locus_tag="KLC54_001557"
     CDS             671..1123
                     /locus_tag="KLC54_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177918.1"
                     /translation="MRKIIFILAFAFVIVILYIIFDFYIIKDSKKITKADFSTPLTCD
                     LNVKDCTYSFNNKEVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGEIK
                     PKIHRLNSTDYESKIVLAACVLDTMRFRVEFMDNNKPIGFYFDFELKK"
     gene            1120..1680
                     /locus_tag="KLC54_001558"
     CDS             1120..1680
                     /locus_tag="KLC54_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HBD9177919.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLAGKALKQINNPKAHLLFISLDPNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSITHSNMLYLIDEK
                     GHFYKEISDLNPQEILRELRIFLNSQ"
     gene            complement(1687..2586)
                     /gene="cysM"
                     /locus_tag="KLC54_001559"
     CDS             complement(1687..2586)
                     /gene="cysM"
                     /locus_tag="KLC54_001559"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HBD9177920.1"
                     /translation="MKVHEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPVNLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEIIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(2713..3009)
                     /locus_tag="KLC54_001560"
     CDS             complement(2713..3009)
                     /locus_tag="KLC54_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HBD9177921.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            complement(3111..>3376)
                     /locus_tag="KLC54_001561"
     CDS             complement(3111..>3376)
                     /locus_tag="KLC54_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177922.1"
                     /translation="NLKINFDLGHYEKFKELTLKNYHELAKHYALRLDAKEFLSRFCE
                     IKDNIFLPIMPKCKEFVKFYYDLYEKIGNEIDNSGEFERYKKK"
BASE COUNT         1220 a          503 c          405 g         1248 t
ORIGIN      
        1 aatatagtta atggtgatat tcttataaat tttataggta gaagcattac cgatgattct
       61 agatttaggg ttgaattttt aaacaataat gctccaactg gttttttctt tgattttgat
      121 gttactatgc aaaaaaattt tcaaacaggt aacacacatt gaaaaatttt caaaatttta
      181 tattcaaata aaaatatttt ttgatataat gaacaaatat ttaatattat aaaaataagg
      241 atacaatatg aaaaaaattc ttctcttagg tgctcttttt gctgtaaatc tttgggctgt
      301 taatgatata gaggtaaaaa atgcctttgt aaaacaaact ccacctcatg cacaaaatag
      361 tgctattttt cttaccattt ttaataatac tgataaggat attgctctaa taagtgccaa
      421 aagcgatatc agtgaagtca gtgaactgca tacacatata cataaagatg gaaaaatgat
      481 gatgcaaaaa attcctgaaa ttattataaa agctcattca agcacagagc ttaaatcagg
      541 aggttatcat ataatgcttt taaaactaaa aaaacctatt attaaagaca cgaaggtaaa
      601 tttagattta aaatttaata atcataaaat catagagtta aaaaatattg attctaaaga
      661 attttaatta atgagaaaaa ttatttttat cctagctttt gcttttgtta ttgttatttt
      721 atatattatt tttgattttt atataataaa agattctaaa aaaataacaa aagctgattt
      781 ttctacccca ttgacttgcg atcttaatgt taaagactgc acatatagtt ttaataataa
      841 agaagtctta atttccctaa atcccaaacc cttacaatct ttagatgtta caaatctaaa
      901 gattgtaaat ctaggaaatt ataacaactt aggaattaaa atttatggat taaatatgta
      961 tatgggtgaa attaaaccta aaatacatcg attaaattca acagactatg aaagtaaaat
     1021 agttcttgct gcttgcgttt tagatactat gcgttttagg gtagaattta tggataataa
     1081 taaacccata gggttttatt ttgattttga gctaaaaaaa tgaaaaaaaa tattattttg
     1141 tttatagtta tagttgccat tattttaggt gtaatatttt ttattaaaaa tcatcaaaat
     1201 tcttatgatt ttatcttaaa atcagactta aaagaggaaa ccaccctaaa agattttaaa
     1261 ggagataagc ttattatcta ttttggatac acttattgcc ctgatgtttg tccagcaact
     1321 cttagtttag caggcaaagc cttaaagcaa atcaataatc ctaaggctca ccttcttttt
     1381 atttctttag atccaaatag agataataac ttaagcaata caaacgaatg gttacgatac
     1441 ttttatccaa aagcagatgc tttaattgca aaagatgaaa aaactcttca aaaaataaca
     1501 aaacaatata atgttcaata tcaaaaaata gatctaaatg attcttttat gggttattct
     1561 ataacacata gcaatatgct ttatcttatt gatgaaaaag gtcattttta taaagaaatt
     1621 agcgatttaa atccacaaga aattttaaga gaacttagaa tttttctaaa ttctcaataa
     1681 ttatacttaa gcaaaaagat cagttgagag gtatctttca gccgtatcgt ttagcatagt
     1741 taaaattctt ttatctggaa atttctttgc tagcatactt gcggcaaata catttgctcc
     1801 acttgatata cctaccatta aaccactttt ggcaagttct ttggctgtat ttatagcatc
     1861 ttcattactt accgtgatca cttcatctat aatttcttta tttaaaatag caggtataaa
     1921 attcgcccct attccttgta ttttatggct tcccgcttca cctttgctaa gcaatggaga
     1981 atttagaggc tcgactccaa caatatgcac tttttctaat ttttctttta gtatttcccc
     2041 aactccacta atagtaccgc cagttccaaa accagctaca aaaatatcaa gttcattatc
     2101 caaatctctt aaaatttcta aagccgtatt cttacgatgc gcatttttat ttgaaatatt
     2161 ttcaaattga gaaaccataa aagaatttgg agtatttaat aatatttcat ttgctttatc
     2221 aaccgctcct ttcattccta aatttacagg agttaattct aacctagcgc caaagagtgt
     2281 tatcattttt cttctttcta aactcataga ttcaggcatt acagcaataa atttaagtcc
     2341 caaatctgca caaatcatag ccaaagaaat tccagtattt ccactagttg cttcaactat
     2401 tgtagtatct tgattaattt ttttactatc taaagcatct ttaatcattt caaaagctgc
     2461 tctatctttt atagaatgac taggatttaa aaattcacat ttagcaaaaa cattgatacc
     2521 aaattttttc aaatgtataa taggagtatt tcctataagc tcacttactt tttcatgtac
     2581 tttcataatt ttaatatcct tttttgttta ataatgatag ttttataaaa gtttaaaaaa
     2641 ataaagtaaa taaaagatac aaaatatctg aattaattaa gaaagaaggc tagaatttat
     2701 ctagccgaag ttttattttt tctttttgcc gcttgctttt gcaacagctt ctttaaggtt
     2761 tttacctacc ttaaattttg caactcttgt ggcaggaact ttgattgttt ttcctgtgct
     2821 tggtactcta gcttctctag cagctctttc ttgagttgaa aaagtaccaa aaccaataaa
     2881 actaatgcta tcacctttag ccaaaacatc agtaatagta gaaataactg catcagtagc
     2941 agtagtagcg tctttttttg ttagcccagc tgtttgagca actaatgaaa tgaaatctgc
     3001 tttagtcata aaagctcctt tgttttaatt gaaacgccta attttagcat atttaaaaaa
     3061 caatatcaag taaaaaacag ctttttttaa gtttttttca aaaaacttta ttattttttc
     3121 ttatatcttt caaattctcc gctattatca atttcattgc caattttctc gtataaatca
     3181 taataaaatt taacaaattc tttacactta ggcataatag gaagaaaaat attatcttta
     3241 atttcacaaa atctacttaa aaactctttt gcatcaagtc ttaaagcata gtgttttgct
     3301 aattcatgat aattttttaa agttagttct ttaaattttt cataatgccc taaatcaaaa
     3361 tttatcttca aattat
//
LOCUS       DAEDTT010000125         3361 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.125, whole genome shotgun sequence.
ACCESSION   DAEDTT010000125 DAEDTT010000000
VERSION     DAEDTT010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3361
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.125"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..540)
                     /locus_tag="KLC54_001562"
     CDS             complement(<1..540)
                     /locus_tag="KLC54_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HBD9177923.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLL"
     gene            complement(559..1107)
                     /gene="apt"
                     /locus_tag="KLC54_001563"
     CDS             complement(559..1107)
                     /gene="apt"
                     /locus_tag="KLC54_001563"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HBD9177924.1"
                     /translation="MIKLTQEEQKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLKHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFVPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLMN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(1104..1436)
                     /locus_tag="KLC54_001564"
     CDS             complement(1104..1436)
                     /locus_tag="KLC54_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177925.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(1436..1873)
                     /gene="rpiB"
                     /locus_tag="KLC54_001565"
     CDS             complement(1436..1873)
                     /gene="rpiB"
                     /locus_tag="KLC54_001565"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HBD9177926.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKIDERSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            2039..2593
                     /locus_tag="KLC54_001566"
     CDS             2039..2593
                     /locus_tag="KLC54_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HBD9177927.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDIKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLVKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            2609..>3361
                     /locus_tag="KLC54_001567"
     CDS             2609..>3361
                     /locus_tag="KLC54_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheR"
                     /protein_id="HBD9177928.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILALKLNKFLEG
                     TNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNIL
                     SAPCSSGEEVYSLALLAAQNFIKDMYILGIDINSSVIEKAKLGKYQGRTLQRLSESEK
                     RRFFLESEDKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHESKL
                     KLMERFHRILNDKGRLYVGNADLIPETIYFKKI"
BASE COUNT         1197 a          464 c          502 g         1198 t
ORIGIN      
        1 taataaaagg gataaaaaag ctataataat aatggctgca taataccaat gttcttcagc
       61 ccaagtcacc atcttccaaa tttgttctcc aaaataccaa gctaaaagta tagtgattga
      121 tgcccaaacc caagcactaa aaagattgat aatagcaaat ttttttgcac tataacgcgt
      181 gattcctata ctcataggta taatggttct aaagccatac atatagcgtt gtataaaaat
      241 aataggccaa ccaaaacgtt gtaaaagtag gtgtgctact gcaaatttac gcctttgagt
      301 ttttaatttt ttttgtatgt agcgtttatt atatcttcct atatagaaat aaatttgatc
      361 gcctacaaaa ccgccaagac ctgctataaa tataacaaag cctaaattta catgtccttg
      421 atgggcaaaa atacctgcta aaattaaagc taactctcct tctaaaatac accataaaaa
      481 aataataata taagctagat ctttgtattg gtaaagtaaa ttttttaaaa attcttccat
      541 ttgtaccttt ctatagtttt aaatttctaa aacactataa actgaagtaa gtttttcaag
      601 tttatttgct ccatttaaat ctttaagatt cattaaaaaa caagcttcaa cacattttgc
      661 tccagctttt tgaatgagtt catatgaagc tatagctgtt ccgccagttg ctattaaatc
      721 atctacaagt aaaactcttg cattttgaat atttttaaat gcatctttat gaagttctac
      781 tttatcgctg ccatattcaa gatcgtattc gcagctaaag gtttcaaaag ggagttttcc
      841 aggttttcta ataggcacaa aaggaagatt aagttttgca caaatcatag atgcaaagat
      901 aaatcctctg ctttctgttc ctgctatgaa gtctagattg taatctttgt agcgttcttt
      961 taaatgttta agtagaaaat ttaaagcctc tttgttattt agtagagtgg taatatctct
     1021 aaagataatt cctttttttg gaaaatcagg aataattcta atgctatcaa gcaggtattt
     1081 ttgttcttct tgtgttagtt ttatcataat aatgcctcga tttttgcttc taattcttta
     1141 attctttgtc ttagtttgtc attttccaaa cgatattgag aatttctagt tcttaaagat
     1201 gtaaggtctg ctttgatttt attaagttct tctgtgagta tatctatatt tccaagactt
     1261 ctttgaagtt gaatttgtag ttttctaatg acaatctcag tatcatcaag attgtttttg
     1321 ataaaatctt ttgatgtttt ttctttatta agtagagttt tatagtaaaa caacattaca
     1381 ataagataga tagttgcaca aatcaatata gttaaaacaa gccagtttgt aaacattata
     1441 tttttacctc aattttttga attctttgca tatgtctccc ttcttcaaaa ggagtttgaa
     1501 tgaatttttc tataatatct atagctaatt caaccccgat taatcttccg cctaatgcca
     1561 aaacattggc atcattatgc cttcttgcaa gttctgcact taagctttca tgacataatg
     1621 cacaacgaat gtttttatga cgatttgctg caatagaaat tccaattcca cttccacaaa
     1681 taagaatgcc aaagcttcgt tcgtctattt tttcggcaag taaatgtgca taatcaggat
     1741 aatcgcagct tgcgcaagtg tttgttccta aatcgttaaa aattatattt ttttctttta
     1801 aaaatacgca aattttttct tttaattcaa aaccagcatg atcactagca atataaattt
     1861 tttccctaag cattggtttc ctacattact atataaaata agataaaaac ctaatcttat
     1921 catattaaat cataaaaaca gcttttcttt ttttaaaaat aagctttatt tttctttata
     1981 tatgttagaa ttacgtgaca agaaaaataa aatttcaata aattaagggg agaagaaaat
     2041 gaagctcata ctcataggat cttcaacagg tggtcctaat cagcttaaat ttcttttaaa
     2101 ggatattgat ataaaaaata cttgtgtagt tatagctcaa cacatgagtg ccagttttat
     2161 tccatctttt gtggggcaat ttaataaaga agcttttagt gaagtgtgct tattgaatga
     2221 taaagagata ttaagcaata aaatttatat ttgccctaaa aatactattt tatctggaaa
     2281 tttaaatatt gtagccgctt ggcaagatgt ggcttcaagc tttaaaccga gtgtggattt
     2341 actttttcat tccgctgttt ctttggtaaa aacaaataaa atacttgcta ttattttaac
     2401 gggcatggga gatgatggtg caaaaggttt atttgagctt tataaaacag gagttagatg
     2461 tttatgcgag aatgaagcag atagtgtcgt ttatggtatg ccaaaaagag caaaagatat
     2521 gaatccgcat ttaaaaccta tgagcttaaa agaaattaaa aaagaaattg taaattttat
     2581 tgatcaggat taataaaagg aaaattgcat ggaaaaaaaa ataactccta gcgaattaga
     2641 acttaatgaa tttataaaaa ttatcaacga aatgagcggt attgatttaa ccgataaaaa
     2701 aaatatacta gctttaaagt tgaataaatt tcttgaagga actaatacta aaaatttttc
     2761 cgaatttttg ggaaaattaa aaagcaatag acaacttaaa caagaaactt tagattttgt
     2821 aaccataggt gaaacttatt ttttaagaga attggctcaa ttgaaagaaa taatttatta
     2881 tgccaaaagc ttagaaaaga gagtaaatat cctaagtgcc ccttgttcaa gtggagaaga
     2941 ggtatattct ttggcattat tggctgcaca gaattttatt aaagatatgt atattttagg
     3001 cattgatatt aattcaagcg tgattgaaaa agcaaaactt ggaaaatatc aaggaagaac
     3061 tttacagcga ttgagcgaga gtgaaaaaag aaggtttttt ttagaaagcg aagataaatt
     3121 ttatactatt aataaaaatg agctttgtac ttgtaaattt gaactttgca atgtttttga
     3181 agaaaaattt tcaagattgg gaaaatttga tattatagct tctagaaata tgattattta
     3241 ttttgatcat gaatcaaaac taaaacttat ggagagattt catagaattt taaatgataa
     3301 aggaaggctt tatgttggca atgctgattt aattccagag actatttatt ttaaaaagat
     3361 t
//
LOCUS       DAEDTT010000126         3353 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.126, whole genome shotgun sequence.
ACCESSION   DAEDTT010000126 DAEDTT010000000
VERSION     DAEDTT010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3353
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.126"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            5..238
                     /locus_tag="KLC54_001568"
     CDS             5..238
                     /locus_tag="KLC54_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HBD9177929.1"
                     /translation="MYLKHLYFSISQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVI
                     LKLFVFDVNFNSIFKSDKEKSTFVLKNLTLEGK"
     gene            239..1801
                     /locus_tag="KLC54_001569"
     CDS             239..1801
                     /locus_tag="KLC54_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HBD9177930.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQNFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMENHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIILTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            1801..2925
                     /gene="cydB"
                     /locus_tag="KLC54_001570"
     CDS             1801..2925
                     /gene="cydB"
                     /locus_tag="KLC54_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HBD9177931.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMINSILFL
                     PFFLGFLAWIFLKDGFSVDANGVVSMSANLYLYNFLNQMIFAILLAIGVILVLLGMVQ
                     GAKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLNDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(3119..>3353)
                     /locus_tag="KLC54_001571"
     CDS             complement(3119..>3353)
                     /locus_tag="KLC54_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HBD9177932.1"
                     /translation="IVNDIIFNELCKGEIKQDSKEKYLNIINKLQEKGAKGVLLACTE
                     IGLLISKNDTNIKIFDTSLIHALDAANEALKDL"
BASE COUNT         1012 a          470 c          605 g         1266 t
ORIGIN      
        1 tatcatgtat cttaaacact tatattttag tatctctcaa atttttaatt tttacaaaga
       61 aggttttaaa aatttaactc ttggaaaaac tctttggaaa attatcttta tcaaactttt
      121 tgttatgttt gtgattttaa aactttttgt ttttgatgta aattttaatt ctatttttaa
      181 aagcgacaaa gaaaaaagca cttttgtact caaaaatctt acactcgaag gaaaataaat
      241 gaacgaactt agtagcgttg attggtcaag agcgcagttt gctttaactg cactttatca
      301 ttttttgttt gtgcctttaa ccttaggctt gtcttttatg attgctatca tggaaaccat
      361 ctatgtaaaa accaaaaatg aaagatggaa aaaaatcacc aaattttggc tttcattatt
      421 tgccataaat tttgctatcg gtgtagctac aggtattata atggaatttg aatttggaac
      481 aaactgggca aattatagct ggtttgtggg cgatattttt ggtgcacctt tggcggttga
      541 aggtattatg gcatttttct tagaggctac tttttttgca gttatgtttt ttggctggga
      601 taaagtaagt aagggttttc acttactttc aacttggtgt gtggctatag gaagcaatct
      661 ttctgctttt tggattttag tggcaaatgg ttggatgcaa tatcctgtag gaatgagctt
      721 taaccctgat acagcaagaa atgaaatgca aaactttttt gaagtagcgc tttctcctgt
      781 agctatttca aaatttttac ataccatagg cagtggttat gtgatttcag ctttatttgt
      841 aatgggaatt tcagcttggt ttatgttaaa gggacgccat attatcgagg ctaaaaaaag
      901 cttagttgta ggagctagtt ttggtttggt ttgttcaatc tttttatttt tcagtggaga
      961 tgaaagtgct tatcgtgtaa ctcaaactca acctatgaaa cttgcagcta tggaaggggt
     1021 ttatcaaggt gaacatcgtg cagggcttgt gccttttgga attttaaatc ctaaaaaaac
     1081 catagataat aacgaaagtg tgtttttatt tgacattact ataccttacg ctctttctat
     1141 actaggaaac cgtgatccaa attcttttgt tccaggaatt gaagatttga tctatggaaa
     1201 tgaaagtaaa ggtatagaac ctatgcaaaa tcgtatcgat agaggaaaaa tcgctataca
     1261 agctctaaaa gactataaac ttgctaaaga aaacaatgat acaatagcta tggaaaatca
     1321 caaatccatt ttagaaactc attttaaaga ttttggttat ggatatttag aaaaaccaag
     1381 tgatactatt ccgcctgtgg ctttaacttt ttatagcttt cacatcatgg ttgctttagg
     1441 aagttttttc tttttacttt tcatcgttac actttatctt actatggcaa atgatattga
     1501 gaaatttaga aaagtacttt gggtgtgttt gttatccatt ccattgggtt atatcgccgc
     1561 tgaagcaggc tggattgttg ctgaagtagg cagacaacct tgggcaattc aagacttact
     1621 tcccgtacat atcgcagcaa cacaacttgg aaaagtcaat gttcaaattt cattttggat
     1681 ttttgcagta ctttttacag ccttattgat tgcagaagtt aaaatcatac ttactcagat
     1741 taaaaaaggt tttgacgcac atgcaggaca tactccactt atgggcaaag gagaaaaata
     1801 atgttttttg gtttagaact tgaaggtttg caaatttatt ggtggttgat tttaagtttg
     1861 ctcggcggac ttttggtttt tatgtttttt gtccaaggtg gacagacttt aatcgatgag
     1921 cttagcaagg atgagcttga aaaaaccatg ctagtcaatt ctttagggcg taaatgggag
     1981 cttggtttta caactctcgt gctttttggc ggagcagctt ttgcagcttt tccacttttt
     2041 tatagtacaa gttttggcgg agcttattgg gcttggcttt gtattttatt ttgttttatt
     2101 ttacaagctg tggcttatga gtatcgtaaa aaagaaaata atgtttatgg ctctaaaacc
     2161 tatgaaattt ttcttaaaat caatggttat ttaggtgtat ttttaatcgg agttgcagta
     2221 agtagctttt ttagcggttc tgaatttatc ttaaatgagc ataattttgt ttcttggcaa
     2281 aaccctttgc acggcttaga acttttactc aatcctttta attatctctt aggcttagct
     2341 ttagtatttt tagcaagact tttaggcgca gcgtatttta tgaacaatat caatgatgag
     2401 aatatcaaaa taagagctat gaaaaaactt atgatcaata gtattttatt tttacctttt
     2461 ttcttaggtt ttttagcgtg gattttttta aaagatggtt ttagcgtaga tgccaatgga
     2521 gttgtaagca tgagtgcgaa tttgtattta tataatttct taaatcaaat gatttttgct
     2581 atcttgcttg ctatcggtgt gattttagtg cttttaggta tggttcaagg agcaaaaggt
     2641 tgctctaaag ctatttttac cctaggactt ggaacggttt taacggtttt tgctttatta
     2701 tcaagcattg gtttaggtca aagtgctttt tacccatctt taaatgattt gcaaagttct
     2761 ttaactttaa aaaatgcaag ttcaagctat tatactctaa gcgtcatggc ttatgtatct
     2821 ttacttgtac cttttgtttt agcttatatt atctatgttt ggaatgcaat ggataaagta
     2881 aaaatcacac gcgaagaaat cgcaaacgat gatcacgcat attaaggaga aaaaatgtta
     2941 catgctttgt ttttattggc ttggccttta gtaatttatc taagctataa atttataatg
     3001 ctaaatatca atcaattaga aaaagatagc aaactataaa gcaagataag atttaaaccg
     3061 atataagtat aaatcttttc aaaatattgc aatttgccca tttttgagca tcttttaatc
     3121 ataaatcttt taaagcttca ttggcagcat caagggcgtg aataaggctt gtatcaaaaa
     3181 ttttgatatt tgtatcattt ttggatatta ataaaccaat ttcagtgcaa gctaaaagta
     3241 ctccctttgc ccctttttct tgtagtttat ttataatatt taaatatttt tctttagaat
     3301 cttgcttgat ttcacctttg caaagctcat taaaaataat atcattaacg att
//
LOCUS       DAEDTT010000127         3096 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.127, whole genome shotgun sequence.
ACCESSION   DAEDTT010000127 DAEDTT010000000
VERSION     DAEDTT010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3096
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.127"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1455
                     /locus_tag="KLC54_001572"
     CDS             <1..1455
                     /locus_tag="KLC54_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177933.1"
                     /translation="YAKNYNYILSKEENTYHFSIDADEENLKTFCDSLNFMSHSVFLK
                     KFDVKAGHGFNPCMPEDKEFSRFSYITHLNSNAYQEKKLLNKNEWGVFCECEFSSNLS
                     EFEKINEENFNTFLNLAFDLLSQEKKIYLKDKNGIYEFSLFKNEFIGDFLLPCDIKAI
                     NSVFVCSNENLKFLASLEKPLMKLRLNAMFRKNHNLDFNDFKIRLARDLFCFALGLKL
                     FENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFEFINAKARELIFSKEDKNMARIS
                     YLVSRYKEKAFILELSKDYEDILLVNKELNLLKLSLPKHSKELYEEIKKDEIGARLLE
                     NFSKEFPLLDENFELQNNFYSLLGLVGRVLNLGKNLQESVSELLKIADESKMPRGVKI
                     DYRLKEDKSFDYTRTLRSAMSFMLAGVDSANIAYGAVESLAYFLRDTYDELREKKQSD
                     LALISGSLFEHKSLLKNTLKHLKNCQLSDVPLRV"
     gene            1436..>3096
                     /gene="hypF"
                     /locus_tag="KLC54_001573"
     CDS             1436..>3096
                     /gene="hypF"
                     /locus_tag="KLC54_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HBD9177934.1"
                     /translation="MCHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGVE
                     IILACTQKECENFIENLKNHLPPLARIDQLIITQISISNYENFSITPSLENTKSTPML
                     SDFALCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRFNTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFMQSAKFLKEGKILA
                     IKGIGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGSLVATSANLSGESI
                     IKDEFNLCKKLDKVFDFYLDYDREIINASDDSIAQVVNGETMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDAHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSL"
BASE COUNT         1081 a          349 c          565 g         1101 t
ORIGIN      
        1 tatgcgaaaa attacaatta tatccttagt aaagaagaaa atacttatca tttttctatc
       61 gatgcagatg aagaaaattt aaagactttt tgcgattctt tgaatttcat gagtcatagc
      121 gtttttttga aaaaatttga tgtaaaagcg gggcatggtt ttaacccttg tatgccagag
      181 gataaagaat tttcaagatt ttcttatatt actcatttaa attctaatgc gtatcaagaa
      241 aaaaaacttt taaacaaaaa cgaatggggc gtgttttgtg agtgtgaatt ttcaagcaat
      301 ttatcagaat ttgaaaaaat caatgaagaa aatttcaata cttttttaaa tcttgctttt
      361 gatttgttaa gtcaagaaaa aaagatttat ttaaaagata aaaatggtat ttatgaattt
      421 tctttgttta agaacgaatt tataggagat tttttgcttc cttgtgatat taaggctata
      481 aattcagttt ttgtttgttc aaatgaaaat ttaaaatttc ttgcaagttt agaaaaacct
      541 ttgatgaaac taaggcttaa tgccatgttt agaaaaaatc acaatcttga ttttaatgat
      601 tttaaaatca gacttgctag ggatttgttt tgttttgctt taggtttaaa actttttgaa
      661 aatgaatata aatttttgag cgtaaaaaag atagaagaat atcaaaaaga tttttatatc
      721 agtgctttag atgagcaagt ggtggttttg gaaggctttg aatttatcaa tgctaaggca
      781 agagagctta ttttttctaa agaagataaa aatatggcaa gaatttctta tcttgtaagc
      841 cgttataaag aaaaggcttt tattttagag cttagtaagg attatgaaga tattttgctt
      901 gtcaataaag agcttaattt acttaaactt tccttgccaa aacacagcaa agaactttat
      961 gaagaaatta aaaaagatga aattggtgca aggcttttag aaaattttag caaggaattt
     1021 cctcttttag atgaaaattt tgagcttcaa aacaattttt attctttgct tgggttagta
     1081 ggtagagtgc taaatttggg taaaaattta caagagagtg ttagcgagct tttaaaaatc
     1141 gctgatgagt caaaaatgcc tcgtggagta aagattgatt atcgtttgaa agaagataaa
     1201 agttttgatt atacaagaac cttaagatct gctatgagtt ttatgttagc aggtgtagat
     1261 agtgctaata tcgcttatgg agcggttgag agtttggctt atttcttacg tgatacttat
     1321 gatgaattaa gagagaaaaa gcaaagtgat ttagcgctta taagtggatc tttgtttgaa
     1381 cataaatctt tgcttaaaaa tactttaaaa catcttaaaa attgtcagtt aagcgatgtg
     1441 ccacttaggg tataagatca aaatttcagg cttagttcaa ggggtgggtt ttcgcccctt
     1501 agtttatgaa ctagctttga aatcaaagct ttttggagag gtaagaaatg atggttttgg
     1561 ggtagaaatc atccttgctt gcactcaaaa agaatgtgaa aatttcatag aaaatttaaa
     1621 aaatcatctt ccacctttag caagaataga tcagcttata atcacgcaaa tttctatttc
     1681 aaactatgag aattttagca ttactccttc tttagagaat acaaaaagca cgcctatgtt
     1741 aagcgatttt gcgctttgta aggagtgtaa aaaagaattt tttgatgaaa aaaatccacg
     1801 ctttttatat ccttttatca cttgcacaca ttgtgggcca cgctttagta ttataaaaag
     1861 tcttccttat gatagattta atacctctat gcaagaatta ttgatgtgtg agttttgtaa
     1921 aagtgaatac gaagatccta aaaataggcg ttttcatgcc cagcctatta gttgtcctaa
     1981 atgcaaaatc aatgtttttc ttaaaaatcc aaagggtgaa attttagcta aagatcaaga
     2041 agcttttatg caaagtgcga agtttttaaa ggaaggtaaa attttagcca taaaaggcat
     2101 aggtggtttt catctcatgt gcgatgcttt taatgaagaa gctttaaaaa ctctaagact
     2161 tagaaaaaat cgccctaaaa aaccttttgc tttgatgtgt aaagatttac aaagtgctaa
     2221 agaacttgcc tttatagatg aaaaagaaga agctttgctt ggtggggttt tagctcctat
     2281 tgtgatttta aaggcaaaaa aagccttttc tttaatcgct cctgatgttg ataaaatcgg
     2341 tattatgtta gcttatacac ctttacatct tttgcttttt gagtatttta aaggaagcct
     2401 tgtagcaacg agtgcaaatt taagcggaga aagtattatt aaagatgagt ttaatttgtg
     2461 taaaaaactt gataaagttt ttgattttta tttggattat gatagggaaa ttatcaatgc
     2521 aagtgatgac agcatagctc aagtggtaaa tggtgaaact atgtttttgc gtacttcaag
     2581 gggtttaaat cctttttatt tggaaagaaa ttttaataaa aaaggcactt ttttagcttt
     2641 aggtgcggaa cttaaaaatg aatttgtgat tttttatgaa aataaacttt taatttctcc
     2701 ttatataggg gatttgaaaa gtcttgatgc gcatgagaga ttttttaaac ttttagaatt
     2761 ttttaaacaa aattatgatt tgaaatttga tgcgattttg tgcgataaac acccgcattt
     2821 tagctatgca aaagaatttg aagaaaggat taaaatttct catcattatg cgcatttttg
     2881 tgcggcttat tttgaatatg aagaaaattt tgcaaaagat gaaaaggctt tagcttttat
     2941 ttgtgatgga acaggttatg gcgaagatgg taaaatttgg ggtggagaag tttttgtagg
     3001 aaatttaaaa gaatatgaaa gaattgcaca ttttgaaaat ttcactctta taaatagtga
     3061 tattaaaaat atacaaaatt tagccttaag tcttat
//
LOCUS       DAEDTT010000128         3031 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.128, whole genome shotgun sequence.
ACCESSION   DAEDTT010000128 DAEDTT010000000
VERSION     DAEDTT010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3031
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.128"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..765
                     /locus_tag="KLC54_001574"
     CDS             <1..765
                     /locus_tag="KLC54_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HBD9177935.1"
                     /translation="ILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYF
                     DEKNIEALKSIYKELYQLTKNKSFALALVELLNSQGKTEEALKISLQYDLDDDIKLAL
                     YQNLKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQ
                     AIDKDSNALYLNYYGYLLIDYDLDVKKGIELVKLALEKDPQNLYYLDSLAWGYYKLGD
                     CRQAWEILKQTLDDKEFANSDESKAHIKAIKACVKP"
     gene            762..1538
                     /gene="trpC"
                     /locus_tag="KLC54_001575"
     CDS             762..1538
                     /gene="trpC"
                     /locus_tag="KLC54_001575"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HBD9177936.1"
                     /translation="MILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKAL
                     KRVEKEVKIIAEVKKASPSKGVIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLE
                     YLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFAGADIIGINHRNLEDFTMDMSLCEKLIPQIPNSKIIIAE
                     SGLENKEFLEHLQNLGVDAFLIGEYFMREKDEGKALKALL"
     gene            1548..2033
                     /locus_tag="KLC54_001576"
     CDS             1548..2033
                     /locus_tag="KLC54_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HBD9177937.1"
                     /translation="MQYLYAPWRSEYFEKEKSICPFCDCANKIKSDEDLGVIFRAKHC
                     FGVMNRYPYSVGHFMVIPYVHEEHIENLSDEIWQEMSHFVRLGVKILKEQIHANGVNI
                     GMNLSKDAGAGIAPHCHYHLVPRWAGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNA
                     Q"
     gene            2023..3027
                     /gene="mnmH"
                     /locus_tag="KLC54_001577"
     CDS             2023..3027
                     /gene="mnmH"
                     /locus_tag="KLC54_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HBD9177938.1"
                     /translation="MLSEVEFAEFQKENFSLLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKARGASYICQNTAKHILKITQNFRIGEKVGIYCSRGGLRSKS
                     IAVILSELGFRVVRLKGGFKAYRTFVTHYFENEINFDFFTLCGNTGCGKTELLEQLPQ
                     AINLEKIANHLGSSFGDILGKQPTQKAFEAELFHNMQNLENFAFIESESRKIGDIILP
                     LKFYEKMQKAFKIYCFCSLENRVKRIQKIYQEKMTPLKFQQCVQKISPYISLNLRQDL
                     LQSYERKEWQRLITMLLEYYDKTYKKPDKIDLELNTDDILKAKEEILRYFKLKNYILI
                     "
BASE COUNT         1100 a          380 c          569 g          982 t
ORIGIN      
        1 attttattta aactcatagg aatttatgcg attttaaatg atactttaaa tattaaaaat
       61 gttttagaat tttcaagaaa aaccaatggt tgcactctca aaacttgcgt cttgcttgct
      121 aaaatttatt ttgatgaaaa aaatatcgaa gctttaaaaa gtatatataa agagctttat
      181 caacttacca aaaataaaag ttttgcattg gctttggttg agcttttaaa ttctcaaggc
      241 aaaacagaag aagctttaaa aatttctttg cagtatgatt tagatgatga tattaaactc
      301 gctttgtatc agaatttaaa acgctttgat gatgctaaaa aaatgagttt agctctttat
      361 cataaaacaa aaaataaaga atatcttcta cgagcggcag tttttgaatt tgaagctgca
      421 aatgaagcta aaaaaatcac tccgaaagta attgattctg taaaagaaaa attcgaacaa
      481 gctatcgata aagatagcaa tgctttgtat ttaaactact atggatattt gcttatagat
      541 tatgatttag atgttaaaaa aggtatagag cttgtgaaac ttgccttaga aaaagatccg
      601 cagaatttgt attatttaga ttctttagct tgggggtatt ataaactagg cgattgtagg
      661 caagcatggg aaattttaaa acaaacatta gatgataaag aatttgcaaa ttctgatgag
      721 agtaaagctc atataaaagc gataaaggcg tgtgtaaaac catgatattg gataaaattt
      781 ttgaaaaaac aaaagaagat ttaaaagaac gcaaactaaa acttccttat gatatgttag
      841 ggcgttcttt agcttcaaat cctttctttc caaaagatgt gattaaagct ttaaaaagag
      901 tagaaaaaga agttaaaatc atagcagaag taaaaaaagc aagccctagc aagggagtca
      961 ttagagaaga ctttgatcct ttgagtattg ctttaaatta tgagaagaac aaagctgcgg
     1021 cgatttctgt tttgactgag ccacattttt ttaaaggttc tttagaatac ttaagtctta
     1081 tacgccgtta tacacaaatt cctttactta gaaaagattt tatctttgat gagtatcaaa
     1141 ttttagaagc tttggtttat ggggcagact ttgtattgtt aatcgctaaa atgctaagca
     1201 tgaaagagct taaaaaactg cttgagtttg caagacattt aggtcttgag gctttggttg
     1261 aaattcatga taaagaggat ttgagtaagg ctatttttgc tggagcggat attatcggta
     1321 tcaatcatcg taatttagag gattttacta tggatatgag tttgtgcgaa aaacttatcc
     1381 cacaaatccc aaattcaaaa atcatcatcg cagaaagtgg tttagaaaat aaagaatttt
     1441 tagagcattt gcaaaattta ggcgttgatg cttttttaat cggcgaatat tttatgcgcg
     1501 aaaaagatga aggaaaggct ttaaaagctt tgctttaagg agggaaaatg cagtatttgt
     1561 atgcaccatg gcggagtgag tattttgaaa aagaaaaaag catttgtcca ttttgtgatt
     1621 gtgctaataa gatcaaaagc gatgaagatt taggcgtaat ttttagagca aagcattgtt
     1681 ttggagtgat gaaccgctat ccttattctg tggggcattt tatggtgatt ccttatgtac
     1741 atgaagagca tatagaaaat ttaagcgatg aaatttggca agaaatgagc cattttgtgc
     1801 gtttgggagt gaaaatttta aaagagcaaa ttcatgcaaa tggggtcaat atcggtatga
     1861 atttaagcaa agatgcagga gctggcatag cacctcattg tcattatcat ctagtgccac
     1921 gctgggcagg agatacaaat tttatcacaa ccataggaga aactagggtt tgtggtacta
     1981 atatcgagca agtttatcaa aaacttgttt tggcttttaa aaatgctcag tgaagttgaa
     2041 tttgcagagt ttcaaaaaga aaatttctct cttttaatcg atgcaagaag ccctagagaa
     2101 tttttgcatt ctcatttgat aggagcttta aatttttatg cactcaatga tgaagaatat
     2161 caagaaatag gaacgattta taagaaaaat caagctttag ccaaggctag gggtgcgagt
     2221 tatatttgtc aaaataccgc taagcatata ttaaaaatca cccaaaattt tcgcatagga
     2281 gaaaaggtgg ggatttattg ttctcgtggg ggtttgcgtt caaagtctat cgcagtgatt
     2341 ttaagtgagc ttggctttag agtggtgcgt ttaaaaggtg gctttaaagc ttatagaact
     2401 tttgtaacgc attattttga aaatgaaata aattttgatt tttttactct ttgcggcaat
     2461 acaggctgtg gaaaaacaga gcttttagaa caactcccac aagctataaa tttggaaaaa
     2521 atagcaaatc atttaggctc gtcttttggt gatattttag gaaaacaacc tacgcaaaaa
     2581 gcttttgaag cagaactttt tcacaatatg caaaatttag aaaattttgc tttcatagaa
     2641 agtgaaagtc gcaaaatagg ggatatcatc ttacctttga aattttatga aaaaatgcaa
     2701 aaggctttta aaatttattg tttttgttct ttggaaaatc gcgttaaaag aatacaaaaa
     2761 atttatcaag agaaaatgac tcctttaaaa tttcaacaat gtgtgcaaaa aatcagccct
     2821 tatatcagct taaatttacg ccaagatttg cttcaaagtt atgagagaaa agaatggcaa
     2881 aggcttatta ctatgctttt ggagtattat gataaaactt ataaaaaacc agataagatt
     2941 gatcttgagt taaatactga tgatatttta aaagctaaag aagaaatttt aagatatttt
     3001 aagctaaaaa actacatttt aatttaattt t
//
LOCUS       DAEDTT010000129         2966 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.129, whole genome shotgun sequence.
ACCESSION   DAEDTT010000129 DAEDTT010000000
VERSION     DAEDTT010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2966
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.129"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..1309)
                     /locus_tag="KLC54_001578"
     CDS             complement(<1..1309)
                     /locus_tag="KLC54_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HBD9177939.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISTWLQNNDVGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELL"
     gene            1339..2460
                     /gene="tgt"
                     /locus_tag="KLC54_001579"
     CDS             1339..2460
                     /gene="tgt"
                     /locus_tag="KLC54_001579"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HBD9177940.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAITYHKSMQNKGIGIGQNIFGIIQGGTDYKERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEAIDPACSCYTCCNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            2462..>2966
                     /locus_tag="KLC54_001580"
     CDS             2462..>2966
                     /locus_tag="KLC54_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HBD9177941.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQDEEFKLSSIEEFSNFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFY
                     KKSFVLRQKINKNLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILSKNTKEHLVR
                     VDTLYTLT"
BASE COUNT         1080 a          453 c          417 g         1016 t
ORIGIN      
        1 ttagtaattc tttttgaaaa ctcacaaatt gtaacaaatc ttcgcgatat tgcaaattta
       61 aaagagggtt ttcatcattt ttattaataa tttgtatatt tttatcataa agcttagata
      121 aacttctaaa atactcctcc atatctgtag tattttgaga atttggatta taataatata
      181 aaataactcc aaaatcaagc tgtttactta aatcagtaat gacatttgca ttgttttcaa
      241 gttcactctc atcagcactt aaaataatcg cttctttaag ttcatcaaaa gaagcttcac
      301 ccactttcat aataggaatt tttaaatcaa aaaaagcttg tttttctttc tcaaaatttt
      361 ttatatcggt tacaactaat cctacatcat tattttgcaa ccatgtggaa atttgtttaa
      421 aatccgtgtt gaaataatca aaaaacacac cttctttatc ctcagaaagt ttttttaatt
      481 tttcatacat tacccctaat ttaggattga taacatgtat aaaaaatctt tttgcattgc
      541 ttttttgagt taattttaaa gtagtatcaa gcactctttc ttgcatattt tgattcatat
      601 ttttcatatc aattaaagca aaaacattac ttccaaaagg cataggaaat tgccctgctt
      661 tgcctcttat attatgaaaa atactttgta aaacaacagg atctccaacg atcaaaatgc
      721 tatcatttgg ctctaaaaca aaagatggtt ttacaaaata aatcttagaa tttctataaa
      781 taaggactat gcgccacctt ttttgttgta ttgaacttat gtgcctataa gcaaaaatag
      841 accctgctgg aatttttact tccataatct ctccaacccc aagtcctata tactgagctg
      901 ttaaagcaat atctggtaaa aaatccataa atctacggct taaagtcatt ctagcatcag
      961 ctaaatttgc atgagtatca ttaacactta acccccaaaa atccattatt tctatttcta
     1021 aatttggatt taaagaacgc aaagcctcat aacttttttt agtttcaaat tcatcttgca
     1081 tataaataaa agcctgttta aaatctttac tcataatatt ttcaagacgc gctgtgcttg
     1141 taggatcaaa ataatgcaag tcaatatact cactagaaat atttaagtta tttttttcac
     1201 tattttgaca cactactgta aaaaagtaac ctaagccttt ttcaaaacaa agcctttcta
     1261 agaaatgctt tgctaaaata ccgtctatta taattaaaat attattcatt ttaaactcca
     1321 aaaaggaaat tataacaaat ggaatttaaa ttaaagcata aagatggaat ggcaagggtt
     1381 tgtgaaatca ctaccgcaca cagcactttt ttaacccctg tttttatgcc tgttggcaca
     1441 gtaggagcgg ttaaaagtct tgatgccaat gatatgaaaa atgagcttga tgcaaaaatt
     1501 attttagcaa atacctatca catgtacttg cgtccaactt ccaaagtggt aaaagatttt
     1561 ggaggtttgc atggttttac gaaatttgat agaagttttt taaccgatag tggtggtttt
     1621 caggcttttt ctttaagtaa aaattctaaa cattttaatg aaggtataga atttaaaagt
     1681 cacatcgatg ggagtcgtca tctttttact ccaaaaagtg ttttagatac tcaatatgat
     1741 tttaattctg atattatgat gattttagat gatttagtag ccctacccgc aaccaaagaa
     1801 agggttaaaa tttctgttga tcgcactata ctttgggcaa aagaggctat tacttatcat
     1861 aaaagtatgc aaaataaagg tataggtata gggcaaaata tttttggtat tatccaaggt
     1921 ggtacagatt acaaagaaag aaagcgttgt gctttaagtt taaacgaaat gccatttgat
     1981 ggtttagcta taggtgggct tagcgtgggc gaagaaaacg ccttgatgta cgaaacagtc
     2041 caaaacttaa acccttatct agatgaaaat cgtccaagat atttaatggg cgtaggaact
     2101 cctgaagatt tagtagaaaa tgttgagcga ggggtagata tgtttgactg cgtgatgcca
     2161 actagaaatg caagaaatgg aacatttttc acaagttttg gaaaatttaa tatcaaaaaa
     2221 gcagaattta tcaacgatca tgaagccata gatcctgctt gctcatgtta tacttgttgt
     2281 aatttttcaa ggggttattt aaaccatctt ttcaaagcta aagaacttac tttttttcgt
     2341 ttggcaagtt tgcacaatct acattattat cttgaacttg caagaaagat gcgtgaagca
     2401 attttgaata attcttttac gcaatttaaa agaaattttt atcacttaag aggcaaataa
     2461 aatgctagaa ctacacgaaa atctaaaaaa aatcctacaa gcaaagaatt tagaaacttt
     2521 ctatagtgaa atttatggac aaaaaatttt tgtttatgtg ggattaaatt tggaaacttg
     2581 gctttttaac gatgaaaaaa tttataaact tcaagatgaa gaatttaagc tttctagtat
     2641 agaagaattt tcaaatttta ttaaatccat tttagaagat tttaaagtac aaaatactca
     2701 ttttcaaaac cttttagaac acaaagaagg tattatctta aaaggtggtt ttgttaaaaa
     2761 tttttacaaa aaatcctttg tgttaagaca aaaaatcaac aaaaatctaa agcaaattaa
     2821 tcttctaagc gaagctttta atcttttgct tagcgaacaa gcacaataca aaaaacattt
     2881 aaaaattcta aatttatcca tcagcatctt aagtaaaaac accaaagaac atctagtaag
     2941 agttgatact ctttatacat taacaa
//
LOCUS       DAEDTT010000130         2918 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.130, whole genome shotgun sequence.
ACCESSION   DAEDTT010000130 DAEDTT010000000
VERSION     DAEDTT010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2918
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.130"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..263
                     /locus_tag="KLC54_001581"
     CDS             <1..263
                     /locus_tag="KLC54_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HBD9177942.1"
                     /translation="WKIPNDSEDEKKQGIAQSDLYQMFAYACKFKIYDIKLVYPLCEK
                     TQHLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVCFAPLPF"
     gene            complement(252..1055)
                     /locus_tag="KLC54_001582"
     CDS             complement(252..1055)
                     /locus_tag="KLC54_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HBD9177943.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKRYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLIFLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKRLGFI
                     MILASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLVHLIGKFLKR"
     gene            complement(1048..1902)
                     /locus_tag="KLC54_001583"
     CDS             complement(1048..1902)
                     /locus_tag="KLC54_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HBD9177944.1"
                     /translation="MLFFEISNLNYAYDNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQRKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTINSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEENCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            complement(1915..2805)
                     /locus_tag="KLC54_001584"
     CDS             complement(1915..2805)
                     /locus_tag="KLC54_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HBD9177945.1"
                     /translation="MKKIILFILSLGIFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFF
                     VKKIAADTLDVNVILPPNSNEHNFEFKPNTMKKLEKSDIYFTIGLEFEKVFTDKFKQN
                     FPKLQVVNMQKNIALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDAL
                     IQKYPQNKNLYKQNLYKFLAELDSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLT
                     QIPVEILGKEPKSKDLQKLITLMKDKNLKVIFVQNGFPENATKTLAKECDAKIYKIDH
                     LSYDWENELLKTADAFSHNL"
BASE COUNT         1052 a          430 c          411 g         1025 t
ORIGIN      
        1 aatggaaaat tccaaatgat agtgaagatg agaaaaaaca gggtatagca caaagcgatt
       61 tgtatcaaat gtttgcttat gcttgcaaat ttaaaattta tgatattaaa cttgtgtatc
      121 ctttatgtga aaaaactcaa catttacaaa gaaaaattgc agaaaaattt tttgttttta
      181 aggcaagtga gcatttgtat tttaaagaac aagggcaaaa agatataaaa gtgcaagtgt
      241 gttttgcacc tttacctttt taaaaatttt cctatcaaat gcactaaaaa accaaagcaa
      301 gctacagcta taatgcaagc accgcttgag agattaagat aatagctaag tataagtcct
      361 aaaacacaaa aaatcatact taaaaaactt gccaaaatca tgataaagcc aagtctttta
      421 gtaaaatttt cagcaataaa gcttgggata ctaagtaaag ccataaccaa aataagccct
      481 acaaggcgta tagaaataac tatacaaaaa gccataaggg cgattaaaag ataatgaaaa
      541 aaacttgtat tgataccacg aacttttgca aattctgcat caaagcttaa tgcttcaaat
      601 tgtctataaa ataaaaagat caaaagtacc accacgctat caaccaaagc cataagccat
      661 aaatcttgtg ttcctacagc taaaatgctc ccaaaaagat aagccattaa atctgtgtta
      721 taactagggc ttaaatcgat taaaataatc ccaacagcca ttccaaaagc ccagattaca
      781 gcgataatac tatcacttct gtgttcatag cgtttagcta aaaaagctac taaaaaagcc
      841 aaaaataaag taaatattcc cgtgcttaat aaaataggta aagaaaaata aaaagctata
      901 cctataccac caaaagcccc atgtgttata cctccagcca tagaaaaaag gcgatttatc
      961 atcaccaaag tacctattat cccacaagct atactgacta aaatcgctcc taataaagcg
     1021 ttttgaaaaa aggtgaaatt taaaatttca agcattattt tcctttgaaa attttaaaca
     1081 aaaattttct tttttaaatt ctgttttttt caaatttctt cttgtaaatt cttgttcgca
     1141 tagtttttta ctatcgcaat tttcttcatc gcaaaaacaa gtatttaaac tcatttctac
     1201 atcacaaaaa tgagagtggt tttcgtataa atgttttaaa aatgaacttt tttctttttc
     1261 tttagtgttg gtatgcaaga aaagttcttt gtttaaatgt gcaattttat cgctataagc
     1321 taatacaagg ttgatatcgt gacaaatgag taaaattccc atgccttttt ggtgcaagga
     1381 gcttagaagt tcaaaaattt gtatagcaga tttgttatca acacttgcgg taggttcatc
     1441 taaaataagc attttgcatt cactagctaa ggctcttgcg ataaaaacac gttgtctttg
     1501 tcctccgctt agagaattaa ttgttttgtt ccaaaatttt tccattccta cgctttttaa
     1561 agcttgcata gctttttctt tatctttttt cccataaaaa ccaaaaattt ttttacttac
     1621 aagtcccata agaacgattt caagtactct tggacaaaaa ttaggattgg ctagagtgtg
     1681 ttgaggaaca tagcctattt cttttctttg aagagctttg aaatggattt catttttgga
     1741 ttttaaaagt cctaagataa gttttacgag tgttgatttt cctgcgccat ttggacctat
     1801 gatagagaga aagtctttat tgtcatagct aagattgatg ttttttaaga tgatttcatt
     1861 atcataagcg tagtttagat tagaaatttc aaaaaaaagc atcaaaaaac ctgattataa
     1921 attatgagaa aaggcatcag cagtttttaa aagctcattt tcccagtcat aagataaatg
     1981 atctattttg taaatttttg catcacattc tttagcaagt gtttttgttg cattttcagg
     2041 gaaaccattt tgaacaaaaa tgacttttaa atttttatct ttcattagag tgataagttt
     2101 ttgcaaatct ttgctttttg gttctttgcc taaaatttct acaggaattt gcgtaagatt
     2161 atagcgtttt gcaaaatatg tccaagaagg atgataaact acaaattctc tattttttaa
     2221 tttttctaat tttgaggcaa tttgtaaatt taaactatct aattctgcta aaaatttata
     2281 taaattttgt ttatataaat ttttattttg tggatatttt tgaatcaagg catcataaat
     2341 atttaaagcc atagtttgga ctaaaatagg atctagccaa gtatgaggat caaaatgctc
     2401 atgttcatgg tgctcatgct catgagagtg ttcgtgcgta tcatgagttt gaatcaaagc
     2461 tatgtttttt tgcatattta caacttgaag ttttggaaaa ttttgtttaa atttatccgt
     2521 aaaaactttt tcaaattcta agcctatggt gaaataaata tcactttttt caagtttttt
     2581 catagtgttt ggtttaaatt caaaattatg ctcattgcta tttggaggta agataacatt
     2641 gacatctaga gtatctgcag ctattttttt aacaaaaaat gcttgaggtg ctatactgac
     2701 actaactaaa ttgctactag tattttgttc ttgctctaaa tttttagctt gtgtgaaagt
     2761 ataaaatatc cctaaagata agataaataa tataattttt ttcaaaatat ttccttcgat
     2821 ataaattttt tccaaattat aacgatatta agcttaatac atagaatttt cgaagcaata
     2881 ttactttaaa taaaaataat aaatataaat taatttaa
//
LOCUS       DAEDTT010000131         2827 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.131, whole genome shotgun sequence.
ACCESSION   DAEDTT010000131 DAEDTT010000000
VERSION     DAEDTT010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2827
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.131"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..508)
                     /locus_tag="KLC54_001585"
     CDS             complement(<1..508)
                     /locus_tag="KLC54_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HBD9177946.1"
                     /translation="MHFYIHIPFCESKCNYCAFTSLKKNDYEKAYFKALKEDIVFQLK
                     QFNIQSNQIKTLFIGGGTPSCVDAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWL
                     KNMKNLGVNRISFGAQSFHPKKLHFLGRIHNQEMIIKALENANKVGFKNINLDLIYDT
                     KLDNKKMLE"
     gene            608..1078
                     /locus_tag="KLC54_001586"
     CDS             608..1078
                     /locus_tag="KLC54_001586"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HBD9177947.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGATININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYFEEKGYI"
     gene            1080..2282
                     /locus_tag="KLC54_001587"
     CDS             1080..2282
                     /locus_tag="KLC54_001587"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HBD9177948.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSAQQGNQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGYPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNVEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            2283..2819
                     /locus_tag="KLC54_001588"
     CDS             2283..2819
                     /locus_tag="KLC54_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HBD9177949.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKAARPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSAFDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSRVQLG"
BASE COUNT          989 a          330 c          538 g          970 t
ORIGIN      
        1 attcaagcat ttttttattg tctaattttg tatcataaat aagatctaaa ttgatatttt
       61 taaaacctac tttatttgca ttttctaatg ctttgataat catttcttga ttgtgaattc
      121 ttccaagaaa gtgaagtttt ttaggatgaa aactttgagc tccaaaagaa atgcgattaa
      181 ctcctagatt tttcatattt ttaagccaat ttaatgttgc tgagttggga ttggcttcgc
      241 atgaaatttc tacattttta tctagtaagg gatataaaat tttaaaaata tcttcataat
      301 tatacgcatc gacacaactt ggtgttcctc cgcctataaa taaggtttta atttgatttg
      361 attgaatgtt aaattgtttt aattgaaaaa caatatcttc ttttaaagcc ttaaaatagg
      421 ctttttcata atcatttttt ttcaaacttg taaaagcgca ataattacat ttgctttcac
      481 aaaatggaat atgaatataa aaatgcataa aaaccctaaa atattttatt aaatttttaa
      541 tgtattttaa taaaaatttg atttgattta ggttaaaatt atatccttga aattaaggaa
      601 aaatattgtg gaaaacgaga aaaattatag accaaatgtt gcagctattg ttttatcaag
      661 ttcttatcct tttgagtgta agatttttat agctaaaaga agtgatatgg ataatatttg
      721 gcaatttcca caaggaggta ttgataaagg tgaaagtgtc aaaaacgctt tatttagaga
      781 actaaaagaa gaaataggta ctgatgaggt tgaaatcatt gctgagtatc cagaatggtt
      841 gagttatgat tttccgagta aaattgttaa aaaaatgtat ccttatgatg ggcagattca
      901 aaaatatttt ttagtgcgtt taaagcacgg tgctacaatc aatatcaata ccaaacatcc
      961 tgaatttgat gattatcaat ttgtgagtgt taaacaaatt tttgaaatga ttaatcattt
     1021 caaaaaaaat atttatgtta aagtgatcaa atattttgaa gagaaaggtt atatctaaaa
     1081 tgcttatagt tcaaaaatat ggtggaacaa gcgttggaac acttgagcgt attgaagcag
     1141 tagccaatag ggttatccaa agtgcgcaac agggtaatca acttgttgtt gtagtatctg
     1201 caatgagtgg ggtgacaaat actcttattg agcaagctga atattttagt aaaactccta
     1261 atggtaaaga tatggatatg cttttaagca gtggagagcg tgtaacaagt gctttacttt
     1321 ctattgcttt aaatgaaaag ggttatcctg ctatatcatt ttctgggaga aaagcgggaa
     1381 ttattacaga tagtgttttt acaaaggcaa gaattcatca tattgataca aaagcgataa
     1441 aatcagaact tcaaaatggt aaaatagtcg ttatagcagg ttttcaaggt gtagatgagg
     1501 aaggtaatgt aactacctta gggcgtggtg gaagcgactt aagtgctgtg gcggtagcag
     1561 gtgccttaaa tgcggatttg tgtgaaattt ataccgatgt tgatggggtt tatacaacag
     1621 atccaagaat tgaaccaaag gcaaagaaat tggataaaat ttcttatgaa gaaatgcttg
     1681 aacttgcaag tttgggtgca aaagttttgc aaaatcgctc tgtagagctt gcaaaaaaat
     1741 taaatgttaa cttagtaact agaagtagtt ttaacaataa cgaaggaaca atgataacaa
     1801 aggaagatgg aatggaacaa gctttagtaa gtggtattgc tttggataaa aatcaagcaa
     1861 gagtaacttt aagaaatgta gaagataagc ctggaatcgc agctgaaatt ttttctgttt
     1921 tagcaaatga aaatattaat gtagatatga ttatacaaaa tgttggagtt gatggcgcta
     1981 caaatttggg ttttacggtt cctcaaaatg aacttgaatt agctaaaaat gctatgcaaa
     2041 aaattttaag ctcaaaaaca actatagaaa gtgatagtgc tgtagtaaaa gtttctatag
     2101 tcggcgtagg catgaaatca cattcaggag tggcaagtaa agcttttaaa gctttagctg
     2161 atgaggggat taatatcggt atgatttcta ctagtgaaat aaaaatttca atgatagttc
     2221 atgaaaaata cggagaactt gcagttagag cactacatga gtgctacgga cttgataaat
     2281 aaatgagtga ttttttaagt tttactcttg aaaatattcg caatggcgga gcttttatgg
     2341 catggttgga gtcgcgtcgt ttagaatggg ctcctttgat ggctgcaaga cttaaatatc
     2401 ttttagaggg acgcactttt gtcttaatgt gcgatgaaca aagatcttgg tatgaagagt
     2461 attttttaaa aaatataaat tcaaaagccg ctcgtcccat gcttcctttt gtgtcgttaa
     2521 attctttatg caagaagaaa gtacaaagtt cagaagatat agctttactt aatgacttgc
     2581 ttgacatttc ttttcctaat ggttatgtgt atttttatat aggaagtgct tttgataata
     2641 aatctttaat cgctaaatca agagatgata gtttattgtg gctttttgat gagcagttac
     2701 aagatagttt ttatttaaat tctaaagata aagacttgga tatcaagctt attagtttat
     2761 atcaactttt tgatgtaagt ttggatgcaa tattattttc cagggtgcaa ttaggataaa
     2821 tattttg
//
LOCUS       DAEDTT010000132         2826 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.132, whole genome shotgun sequence.
ACCESSION   DAEDTT010000132 DAEDTT010000000
VERSION     DAEDTT010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2826
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.132"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            71..238
                     /locus_tag="KLC54_001589"
     CDS             71..238
                     /locus_tag="KLC54_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraM"
                     /protein_id="HBD9177950.1"
                     /translation="MYTGKTKFLMKDALFLENLAQQININNKYFFSMASLCSKAKNHL
                     EMKGFNIYVAL"
     gene            225..854
                     /locus_tag="KLC54_001590"
     CDS             225..854
                     /locus_tag="KLC54_001590"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HBD9177951.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLSIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKNFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNS
                     IHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            973..2319
                     /locus_tag="KLC54_001591"
     CDS             973..2319
                     /locus_tag="KLC54_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HBD9177952.1"
                     /translation="MSQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKIAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVAFNQEIVHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFIDKSLFVKDAKKIVPSLKTSDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLICNYLGMEFNEDKFSSELL"
     gene            2368..>2826
                     /locus_tag="KLC54_001592"
     CDS             2368..>2826
                     /locus_tag="KLC54_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HBD9177953.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRRVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVVSIDNQKIETIIENDG"
BASE COUNT         1094 a          376 c          444 g          912 t
ORIGIN      
        1 ctatgactta agtatgttga ctagaaaaaa aagttatatt tgcgctaaag atcaaaataa
       61 cattcttttt atgtatacag gaaaaacaaa atttttaatg aaagatgcct tatttttaga
      121 aaatctagca cagcaaatta acataaataa caaatatttt tttagcatgg cttctctttg
      181 ctctaaagca aaaaatcatc tagaaatgaa aggatttaat atctatgttg ctctgtgata
      241 ttgggaattc aaatgctaat ttcctagatg ataacaaata ttttactctt agtatagatc
      301 agtttttaga atttaaaaat gaacaaaaaa ttttttatat caatgtcaat gaacatctca
      361 aagaacattt aaaaaatcaa aaaaatttta tcaatcttga accttatttt ttatttgata
      421 caatttatca aggattagga atcgatcgca tagcagcttg ttatactatt gaagatggag
      481 ttgttgtaga tgcaggtagt gctattacaa ttgatattat ttctaattct atacatcttg
      541 gtggttttat cttgccaggt attgcaaatt ataaaaaaat ttatagccat atttcaccac
      601 gattaaaaag tgaatttaac actcaagtta gtcttgatgc attcccacaa aaaaccatgg
      661 atgctttaag ttatggtgtt tttaaaggaa tttacctact gataaaagat gccgctcaaa
      721 ataaaaagct ttatttcact ggtggagatg ggcaattttt agcaaattat ttcgatcacg
      781 caatttatga taaactttta atctttcgag gaatgaaaaa gattataaaa gaaaatccta
      841 atttacttta ttaaaaatgt tacaaaaatt ctcattgata tcaaacctta atgaaattta
      901 actttttgta aaacaaattc aattaaactt ctatttagaa aaaagtttat taaaataaaa
      961 aaaggaaaaa caatgagcca acaagaattt gatgtgcttg tcatcggagc tggaatttca
     1021 ggagcagcat tattttacga gcttgcaaga tatacaaata ttaaaaatat tgctttgata
     1081 gaaaaatata atacagctgc aacattaaat tctaagggaa cgagtaattc tcaaaccatt
     1141 cattgtggag atattgaaac caattatact ttagaaaaag cgcgaaaagt aaaaagaaca
     1201 gctgatatga tagttaaata tggactcatg caaaatgcgc aaaataattt catgttttct
     1261 catcaaaaaa tagctctagc tgttggagat atagaatgtg attatatgaa aaaacgctat
     1321 gaagaattta aagaacttta tccttatata aaatttttcg ataaagcaaa aatcaaacaa
     1381 attgaaccca aggttgtttt aggagaagat tgcaatcaag atagacctga aaatatctgc
     1441 gccatgggtg ttgaaagcgg cgaggttttt acaactgtag attttgggaa aatgagtata
     1501 aatctaatag aacaagccca aaaacaaaat aaaaatactt ttgttgcctt taatcaagaa
     1561 attgttcaca tagaaaaaaa ggatgatatt tttatattaa aaacctcaaa tcatcaagaa
     1621 taccatgcca aaagtgtagt tgttaatgct ggggcgcact ctttatattt ggcgcataaa
     1681 atgaatttag gtatggataa gtcttgttgg cctgttgcag gaagttttta tttaaccaaa
     1741 caaaaacttt taaatggcaa agtttatatg gtgcaaaatc ctaaacttcc atttgcagct
     1801 cttcatggag atcctgattt gcttgctgat atgaacactc gctttggacc tactgcactt
     1861 gttattccaa aactagaacg ttatcatgga ctaaaatcag ttccagaatt tttcgaagca
     1921 ctaaaacttg ataaaactgt tttaaaagta acttttaata tgtttaaaga tgcaacaatt
     1981 agaaattaca tcttttataa ttatcttttt gaactacctt ttattgataa aagcttattt
     2041 gttaaagatg ctaaaaaaat agttccaagt cttaaaacaa gtgatattta ttatgcaaag
     2101 ggttttggag gcgtaagacc acaagttatt gataagacta aaggggaatt aatgctaggt
     2161 gaagcaagca tcacagagac ccctggcatt attttcaata tgactccaag tcctggggca
     2221 acaagttgtc taggaaatgc tgaaagagat gcaaagctta tatgtaatta cctaggaatg
     2281 gaatttaacg aagataaatt ttcttcagaa ttattgtaat cattttgttt ctatttttag
     2341 ctacaataat ttcaaaagga gtttaccatg cttaaaaaaa caaaaattgt agccacagta
     2401 ggtccagcaa gtgaaaagga agaaattcta cgccaaatga ttatcaatgg tgtaaatgtt
     2461 ttccgtttaa acttttctca tggaacacat gagtatcata aaaaaaactt agataccata
     2521 agaagagtag ctaaagaatt gcatactcgt attggaattt tacaagacat tagtggtcct
     2581 aaaattcgta caggtgaact taaagaacca tttgaattaa aaaagggtga tagacttgat
     2641 ttttatcgtg aaacaatttt aggggagaag attgctcaaa atcattataa aatcagcatc
     2701 aatcaaaaat ccattttaga tatgttaaaa attgatgaat atatttatct atatgatgga
     2761 tcaattcgtg ctaaagtagt aagcatagat aatcaaaaaa ttgaaaccat tatagaaaat
     2821 gatggt
//
LOCUS       DAEDTT010000133         2712 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.133, whole genome shotgun sequence.
ACCESSION   DAEDTT010000133 DAEDTT010000000
VERSION     DAEDTT010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2712)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2712)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2712
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.133"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            141..1361
                     /locus_tag="KLC54_001593"
     CDS             141..1361
                     /locus_tag="KLC54_001593"
                     /inference="COORDINATES: protein motif:HMM:NF019310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD9177954.1"
                     /translation="MEKSLLFHFRRIGVEFIIFSVYAVFSISWAATGSLMPLISNDLA
                     LNTQQATLITSMIVVAKIFGASFTAFLVYKFGLKKGYFLGCILMSSGIFLSFVDSYSG
                     ILVIRFLTGLGSACALVCLVPIAQQWFEKKALHFVISFNITSNLVGITLGLILAESIS
                     NYFGNWRDSLSFYAWINLILLILWLFVGKDENKKEEKKNNAKDLIYALKSRVTWGMII
                     FYIGPILFLNSLFTFLPTFYAQYAGFSKELADFAKKEIPALANFAIIFGPYLGLFFKR
                     KNISFKIMLLSGGACIFICGFCMLFLQNLVLIQIFAVLSGIFYSMWFPFFFNLPSELK
                     NSNPNQTAYIMSAFWSITFVILSFNLWVVSWSVDKTHSFTLGFVYIFALIFISAILAQ
                     FVLPRRENFIQGEK"
     gene            1363..2514
                     /locus_tag="KLC54_001594"
     CDS             1363..2514
                     /locus_tag="KLC54_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HBD9177955.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELCTAKLVVQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GIAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNHRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(2518..>2712)
                     /locus_tag="KLC54_001595"
     CDS             complement(2518..>2712)
                     /locus_tag="KLC54_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HBD9177956.1"
                     /translation="YKFVKNGKVISHFAKAYRGILLSISAKNQVKNNKELLANLPSNL
                     KLKEIQIKGLKEEIVFEILD"
BASE COUNT          885 a          307 c          482 g         1038 t
ORIGIN      
        1 tctttaaact tatatataaa ttttcaaaaa gtaacaaaaa aatatataaa aaaataatta
       61 aattaaaaaa ataattaaag ataataaata tcttattttt ttatgttata ttttaataaa
      121 tatctaaaaa ggattttaat atggaaaaat cacttttatt tcattttaga cgcattggag
      181 ttgaatttat aatttttagt gtttatgctg tttttagtat ctcttgggca gcaacagggt
      241 ctttaatgcc tttgatttca aatgatcttg ccctaaatac tcagcaagct actttaatca
      301 ctagcatgat agtagttgcg aaaatttttg gtgcttcatt tactgctttt ttggtttata
      361 aattcggatt aaaaaaggga tattttttag gctgtatttt aatgagttcg ggtatctttt
      421 taagttttgt agatagttat agtggtattt tggttataag atttttaaca gggcttggtt
      481 cagcttgtgc tttagtttgc ttagtgccta ttgcacagca atggtttgaa aaaaaagctt
      541 tgcattttgt aattagtttt aatataactt caaatttagt aggcattact ctaggactta
      601 ttttagctga aagtatctca aattattttg gaaattggag agattcttta tcattttatg
      661 cttggattaa tttgatttta ttgattttgt ggctttttgt aggtaaagat gagaataaaa
      721 aagaagaaaa aaagaataat gcaaaagatc ttatttatgc tctaaaatct cgtgttactt
      781 ggggtatgat tattttttac atagggccta ttttattttt aaattctctt tttacttttt
      841 taccaacttt ttatgcacaa tatgcaggtt ttagtaaaga attagctgat tttgctaaaa
      901 aagaaattcc agccttggct aattttgcta ttatttttgg tccttatctt ggattatttt
      961 ttaaaagaaa aaatatttct tttaaaataa tgctattgtc tggaggagcg tgtattttta
     1021 tatgcggatt ttgtatgttg tttttacaaa atttagtatt gatacagatt tttgctgtgt
     1081 tatcaggcat tttttattct atgtggtttc catttttctt taatctacct tcagaattaa
     1141 aaaattccaa cccaaatcaa actgcttata ttatgagtgc tttttggagt attacctttg
     1201 ttatactatc atttaaccta tgggtagtat cttggagtgt tgataaaacc catagtttta
     1261 ctttgggttt tgtttatatt tttgctttga tttttatttc agcgatctta gcacaatttg
     1321 ttttacctag aagagaaaat tttatacaag gagaaaaata gaatgaattt aattccagaa
     1381 atactagact tacaaggcga atttgaaaaa attcgtcatc aaattcatga aaatcctgag
     1441 cttggttttg atgaattatg tactgcaaaa ttagtggtgc aaaaattaaa agaatttggt
     1501 tatgaggttt atgaagaaat aggaaaaaca ggtgttgtgg gggttttaaa aaagggaaat
     1561 agcgataaaa aaataggact tcgtgcagat atggatgctt tgcctttaca agaatgcaca
     1621 aatttgcctt ataaaagcaa aaaagaaaat gtaatgcatg cttgcggtca tgatggacat
     1681 actacttctt tattgcttgc tgcaaagtat ttagcaagtc agaattttaa tggcactcta
     1741 aatctttatt ttcaacctgc tgaagagggt ttgggtggtg ctaaggcaat gatagaagat
     1801 ggattgtttg aaaaatttga tagtgattat gtttttggat ggcacaatat gccttttggt
     1861 agcgataaga aattttatct taaaaaaggt gcgatgatgg cttcttcgga tagttatagc
     1921 attgaagtta ttggaagggg tggtcatgga agtgctccag aaaaggcaaa agatcctatt
     1981 tatgctgctt ctttgcttgt tgtggcttta caaagcatag tatctcgcaa tgttgatccc
     2041 caaaattcag cagttgtaag cataggagct tttaatgcag gacatgcttt taatatcatt
     2101 ccagatattg caacgattaa aatgagtgtt agagcattag ataatgaaac tagaaagcta
     2161 actgaagaaa aaatttataa aatttgtaaa ggtattgcac aggctaatga tatagagatt
     2221 aaaatcaata aaaatgttgt tgcaccagtg actatgaata acgatgaagc tgtggatttt
     2281 gctagtgagg ttgcaaaaga attatttggc gaaaaaaatt gtgaatttaa tcatcgtcct
     2341 ttaatggcaa gtgaggattt tggatttttt tgcgaaatga aaaaatgtgc ctatgctttt
     2401 ttagaaaatg aaaacgacat ttatttacat aattctagtt atgtttttaa tgataagctt
     2461 ttagctaggg ctgcaagtta ttatgcgaag ctagctttaa aatacttaaa ataaaaacta
     2521 atctagaatt tcaaacacaa tttcttcctt taaacctttg atttgaattt ctttgagttt
     2581 taggtttgaa ggaaggtttg ctaaaagctc tttattgttt tttacttggt tttttgcact
     2641 tatggagagt aaaattcctc tataagcttt agcaaaatga ctgatgactt taccattttt
     2701 tacaaattta ta
//
LOCUS       DAEDTT010000134         2586 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.134, whole genome shotgun sequence.
ACCESSION   DAEDTT010000134 DAEDTT010000000
VERSION     DAEDTT010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2586
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.134"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            119..817
                     /gene="flgH"
                     /locus_tag="KLC54_001596"
     CDS             119..817
                     /gene="flgH"
                     /locus_tag="KLC54_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HBD9177957.1"
                     /translation="MKKVLFYVLPFAFFGCSATVDPQISMKPPAYVEELAPKQSNNVE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            complement(847..1920)
                     /gene="ispG"
                     /locus_tag="KLC54_001597"
                     /gene_synonym="gcpE"
     CDS             complement(847..1920)
                     /gene="ispG"
                     /locus_tag="KLC54_001597"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HBD9177958.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     SRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKERGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
     gene            2043..2567
                     /locus_tag="KLC54_001598"
     CDS             2043..2567
                     /locus_tag="KLC54_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HBD9177959.1"
                     /translation="MDFFKNGGVIWITGLAGSGKSYIAEALYKKLKEKYNNIIYLDGD
                     ELRDLLEHYGYDKQSRIDMSIKRSKFAHFLSSQNMLVIVSAISMWNEIYEHNKKTLKN
                     YFEIYIKCDFEELKKRDKKNLYSKNLKGEISNVVGMDIDFDEPKSNLIIDNTYMTELD
                     NKISYILTALKEKK"
BASE COUNT          927 a          444 c          375 g          840 t
ORIGIN      
        1 gatctcatca aataaagatt tgccatcatt ttctccttga atttataaat gtggaacact
       61 ctttgctttt tctaatttta acaaagaaaa ataaaaattc atattttaaa ggacgaaaat
      121 gaaaaaagtt ttattttatg tgttaccgtt tgcgtttttt ggttgttctg caacggttga
      181 tccgcaaatt tcaatgaaac cacctgctta tgtagaagaa cttgcaccaa aacaaagtaa
      241 taatgtagaa agtgcaccag gatcgctttt tggcaaaggg gataatcctt tattttcaga
      301 taaaaaagct atgaatgtaa atgatttagt tacagttgtt atacaagaaa gtaccactca
      361 aagcacacaa gctaataaag caacaagtag aactaatacc tcaaatttag gcggaggtgc
      421 tttaacagga agttcaggag tggtagctaa tgctcttaat aaagtcaatg cttattctaa
      481 tataggcttt caaaccaata gttcaaacaa ctacacagga acaggctcac aaagcagaaa
      541 tgaaagtttc aatactacaa tttcaacgcg tgtaattaaa attttatcaa atggtaatta
      601 ttttatcgaa ggctcaagag agcttttaat caacggagag aaacaaatca tacaattaag
      661 cggtgttatt cgtccttatg acatcggtca agacaatact atagatagta aatatatagc
      721 agatgctaaa attctttata aaacagaagg tgaagtggat agaagcacaa gaaaaccttg
      781 gggtagcaaa gttatagaag cgatatggcc attctaaaag caaggttaaa ccttgcttct
      841 tggcttttat tcttttacag ccctactttt aacctcatct tcaacttcag ctaaaaatct
      901 atctacaagt tcactttctt ttaatttagc tacaacttca ccatgtctta taacaagtcc
      961 ttgatttttc ccaaaggcta tagccacatc agcgccctta gcttcaccta aagcatttac
     1021 tacacaaccc ataacactga tatttaaagg ttcttttata tgcttggttt tttcttctac
     1081 gattttaatc gcgcttaaca aatcactttg aatcctaccg caagttggac atgagatgat
     1141 atttactccg cttttttgca ctccactatc ttgcaaaatc gctcttgcta cacgaatttc
     1201 ctcttcaagc tcacccgtca tagaaacacg catagtatcg cctatacctt taagaagtaa
     1261 atttcctaaa gctatagaac tttttacagt gctatgaaat ttagttcctg cttcagttac
     1321 ccctaagtga aaaggataat cacaaagcgg tcttaatctc tcataagctt ctatagtttt
     1381 ttgagcatct gaagtcttca tggaaatttt aatatcaaaa aagtctaaat cctctaaaag
     1441 cttgatatta tacatcgcac tttctagcat agcatcgaca ccatagccaa atttatcact
     1501 aaattgtttt tctatggagc cgtgatttac accgatacgt atagggatac cccgttcttt
     1561 acatgctttt accacttctt tgatattttc tttagaacct atattgccag gatttatacg
     1621 cactccatcg ataaattcag cacaatatac agccaaatta tgattaaaat gaatatctac
     1681 gattaaaggc aaaggacttt tagctttaat ttcttttaaa gcccttgcat cagccatatc
     1741 caagcacgcc aaacgcacta tatttgctcc tgcaaaataa agacgactga tttgctctaa
     1801 agaaccttct atatctcttg tcttagtaaa aagcatagat tgaactgaaa tgggtgcatc
     1861 accgcctatt aaaacatttc ctactttgat ttgtctggtt ttaaatcttt tatactccat
     1921 aacttcactc tttgaaaaat tttaatatca aattttaact ttttattgct ttaattaaag
     1981 tttatttttg ataatatagg aaaaattttt acatttatac taaacaaaaa aggaggttat
     2041 ctatggattt ttttaaaaat ggtggagtta tttggattac aggactagca ggaagtggca
     2101 aaagttatat tgcagaagca ttatacaaaa aattaaaaga aaaatacaat aatattattt
     2161 atcttgatgg cgatgaactg agagatcttt tagagcatta tggatatgat aaacaaagtc
     2221 gtatcgatat gtcaataaag cgttctaaat ttgcacattt tctcagttct caaaatatgc
     2281 tagttatcgt aagcgctatt tccatgtgga atgaaattta cgaacacaat aaaaaaactt
     2341 taaaaaatta ctttgaaatt tacataaaat gcgattttga agaattaaaa aaacgtgata
     2401 aaaaaaactt atatagcaaa aacttaaaag gtgaaatttc aaatgttgtg ggaatggata
     2461 ttgattttga tgaaccaaaa tctaatttaa taattgataa tacttatatg acagaacttg
     2521 acaataaaat ttcctacatc ttaacagctc taaaagaaaa aaaataaaga aaaaagcatg
     2581 caaaat
//
LOCUS       DAEDTT010000135         2582 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.135, whole genome shotgun sequence.
ACCESSION   DAEDTT010000135 DAEDTT010000000
VERSION     DAEDTT010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2582)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2582)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2582
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.135"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..428
                     /locus_tag="KLC54_001599"
     CDS             <1..428
                     /locus_tag="KLC54_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HBD9177960.1"
                     /translation="IVSLKFEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCG
                     REFLSVNEMSNFAKLDLATFSKEFKKCFGQSPKKWLDEKRLQKAKILLKFSKKNINEI
                     ANECAFSSVAWFIERFKEKYEQTPKQYQKTKNLYFLSKN"
     gene            491..1342
                     /locus_tag="KLC54_001600"
     CDS             491..1342
                     /locus_tag="KLC54_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD9177961.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKNPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKAKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LAKFGGPNGLYLDRKKHKLFIAGYHPDGVSGGVVMAYDLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLELPLMKGPADIFIEGNILWIPKMAEGKI
                     FKVELNK"
     gene            1350..2513
                     /locus_tag="KLC54_001601"
     CDS             1350..2513
                     /locus_tag="KLC54_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HBD9177962.1"
                     /translation="MASFKKIFWINVIIVIIVAFNLRAPITAVGPIIDIIKDKYYLNS
                     TVAGILTSLPLIAFGSISFIVGYFSPIRAIVFGIFLIFLGEIIRSYFGVYGLFLGMLA
                     MGCGIAIANVLLPSFIKEKFPKKMASIMGIYSLVLSISSIMGIALAIPLLSVFDLAGA
                     MFFWAIFSFIALVVYYPQAKNGRFFRIKKKAHKKINLFTNLTTWKITLFMGFQSFLAY
                     SLFFWYVQIVVEKGFDKEFSTSMVLFAQLVAAPVSLFGPLLLGKLRQNLHTFYIAGLC
                     SMYVIAFGILFIFDSKISIIISAFIMGFPWGGVFGIALLFIAQKSSNAQIAARLSALA
                     QGFGYLIAAQGQWIIGFLHDKFENFSFAILMLVFVGILVNIFGYLSYKSQIIK"
     gene            complement(2484..>2582)
                     /locus_tag="KLC54_001602"
     CDS             complement(2484..>2582)
                     /locus_tag="KLC54_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--N-acetylmuramyl-
                     (pentapeptide) pyrophosphoryl-undecaprenol
                     N-acetylglucosamine transferase"
                     /protein_id="HBD9177963.1"
                     /translation="ENISTRLQNITQKNGADMLIQKALFDNLTFIR"
BASE COUNT          843 a          278 c          443 g         1018 t
ORIGIN      
        1 ctatagtgag tttgaaattt gaagagattt ttttacattt gcttttaaat aagaatattt
       61 attttattag ttttttatca ggaattttaa aagaatttcg cctcgatctt tcccaacttt
      121 ttgagtattg cggtagagaa tttttaagcg taaatgaaat gtctaatttt gcgaaattag
      181 atttagcaac tttttctaaa gaatttaaga aatgttttgg acaaagtcct aaaaaatggt
      241 tagatgaaaa aaggttgcaa aaagcaaaga ttttacttaa attttctaaa aaaaatatta
      301 atgaaatagc taatgagtgc gctttttctt cggtagcttg gtttattgaa agatttaaag
      361 agaaatatga gcaaactcct aagcaatatc aaaagacaaa aaacttgtat tttttatcaa
      421 aaaactagca catttttttt atccaaataa atataattca atgaaaatat ttttaaataa
      481 aggagaaaat atgaaaaaat atgttttaag tttagcgctt cttggaagtt tgcttggtgc
      541 aagtgaatta aaatatcaag aatttgatgg ttttaaaaac cctgaaagta tttttgtaga
      601 taaaaactat gtttatgtat ctaatgtagg agaaaaactt gaacctttgg cgaaagataa
      661 tgatggattt atttctaaac ttgataaaaa tggcaaagtg ctagaatata aatttttaac
      721 ccatcttaat gcaccaaaag gtatgatgga gattggaaaa actctttatg tggtagatat
      781 cgatgtttta cgcggttttg atcttaaagc taaaaaagaa atttttaatt tacctattaa
      841 aggtgcaatc tttttaaatg acatagaaaa attagacgac aatacgcttt tggttagcga
      901 tactggcaca ggacttattt taaaggttga tttaaaaact aagcaatatg atgaattatt
      961 aaaacttgat ttagcaaaat ttggcggtcc aaatgggtta tatctagata gaaaaaaaca
     1021 taagcttttt atagctggtt atcatcctga tggtgtaagt ggcggtgttg taatggctta
     1081 tgatttaaat acaaaagaac tcagtataat taaaaatgaa aaagaatctt atgatggaat
     1141 agttccttat aaagatggtt tattggtaag ttcttgggga aataatctaa atggatatat
     1201 ttataattta gataatgtta aatctgtaaa acttgaactt cctttgatga aaggtcctgc
     1261 agatatattt attgaaggta atattttatg gattcctaag atggcagaag gtaaaatatt
     1321 caaagtagaa cttaataaat aaggctttta tggcttcttt taaaaagata ttttggatta
     1381 atgttattat tgttattatt gtagctttta atcttagagc cccaattact gcagtggggc
     1441 ctattattga tattattaaa gataagtatt atttaaactc aaccgtagcg ggcatactta
     1501 caagtcttcc tttgatagct tttggaagta tttcttttat tgtggggtat ttttctccta
     1561 ttcgtgctat tgtttttgga atttttttaa tttttttagg cgaaattatt cgttcttatt
     1621 ttggtgtata tggcttattt ttaggaatgt tagcaatggg ctgtggtatt gcaattgcaa
     1681 atgttttact tcctagtttt attaaagaaa aatttccaaa aaaaatggca agtataatgg
     1741 gaatttatag tcttgttttg agtatttctt cgattatggg tattgcttta gctatacctt
     1801 tgcttagtgt atttgattta gctggagcta tgtttttctg ggctattttt tcttttatag
     1861 ctttagtagt ttactatcct caagctaaaa atggtagatt ttttcgcatt aagaaaaaag
     1921 ctcataaaaa aatcaatctt tttacaaatt taacaacttg gaaaattact ctttttatgg
     1981 gatttcaaag ttttttagct tattctttgt ttttttggta tgttcaaatt gttgtagaaa
     2041 aaggatttga taaagaattt tctacaagta tggttttatt tgctcaactt gttgcagctc
     2101 cagtgtctct ttttggccct ttacttttag gaaaattaag acaaaattta catacttttt
     2161 acatagcagg tttgtgcagt atgtatgtga tcgcttttgg tatactcttt atttttgata
     2221 gcaaaatttc tattattatt agtgctttta tcatgggttt tccatggggt ggagtttttg
     2281 gcattgcgtt gctttttatt gcacaaaaaa gctctaatgc tcaaatagca gcgagacttt
     2341 ctgctttagc tcagggtttt ggatatttaa ttgcagcaca aggacaatgg attataggtt
     2401 ttttgcatga taaatttgaa aatttttcat ttgctatttt gatgttagtt tttgttggaa
     2461 ttttagtaaa tatctttgga tatttatctt ataaaagtca aattatcaaa taaagctttt
     2521 tggattagca tatctgcgcc atttttttgg gttatatttt gcaatcttgt agaaatattt
     2581 tc
//
LOCUS       DAEDTT010000136         2570 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.136, whole genome shotgun sequence.
ACCESSION   DAEDTT010000136 DAEDTT010000000
VERSION     DAEDTT010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.136"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..913)
                     /gene="pglI"
                     /locus_tag="KLC54_001603"
     CDS             complement(<1..913)
                     /gene="pglI"
                     /locus_tag="KLC54_001603"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HBD9177964.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENKRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAHR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRV"
     gene            complement(906..1985)
                     /gene="pglH"
                     /locus_tag="KLC54_001604"
     CDS             complement(906..1985)
                     /gene="pglH"
                     /locus_tag="KLC54_001604"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HBD9177965.1"
                     /translation="MMKISFIIATLNSGGAERVLVTLANALCKEHEVSIIKFHTGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKADVFISFLDTTNIACI
                     LANIGLKTPLIISEHSNEAYLKPKTWRFLRRVSYPFCDALSVLGSSDKVYYERFVKRV
                     KLLLNPCHFSDEIPFDSSFEKENLVLFIGRLDHNKNPVMFLKAIAHLDKNLQENYKFV
                     IAGDGELRQELEYKVKSLGIKVDFLGRVENVKALYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLVGCDDEIALAKKLELVLNDENFRKELVNNAK
                     QRCKDFEISNIKEEWLKLIVEVKNA"
     gene            complement(1982..>2570)
                     /gene="pglK"
                     /locus_tag="KLC54_001605"
     CDS             complement(1982..>2570)
                     /gene="pglK"
                     /locus_tag="KLC54_001605"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HBD9177966.1"
                     /translation="LNIKKGEKIAFIGESGCGKSTLVDLIIGLLKPKEGQILIDKQEL
                     NASNAKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVDEEKLNKVIKQANLEHFIKNLP
                     QGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEILVLDEATSALDTQSEAKIMDEIYK
                     ISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
BASE COUNT          834 a          499 c          292 g          945 t
ORIGIN      
        1 ccacccgaat ttttgataat ttttcaatca tattatttgg aattatactt aaaatgagta
       61 atatcaaagc aggagcgttg atttttatac tcaggctttt aaacaaacac ttataaagag
      121 ctttataatt ttttgcaagt tttgcataat aagctgccat tttataataa ctcgcacaag
      181 tttttttata atctttatcc ttactcattc taagttcatt ttctaaaatt ttagcaagct
      241 ctaaatatcc caaatacacc ctatgagcat ttttactcgc ccctaaagtc acgctatctt
      301 gcctaaaaat cctataaatc ctaaaagcct tatggatata aaaacttttt tccttgtata
      361 aatttaccca aagcgtggct tcattgccat aaaattcttc attaaaacgc ttgttttcaa
      421 gtagagattt tttaaaaaca gaaaaaaact ctccgctaaa tttagccatt aaaaaatctt
      481 ttttagaaat ttcactatct ttttccaagc ccttaccgct aaattccttg cttaaatttc
      541 cttctttttc tatcaaacaa tttccaaaaa catgagcata accctcattt gctttttgca
      601 tcaaggtact taaagcccca gataaaagct catcatcatc atctaaaaaa gttacaaact
      661 cgccacttgc ttgatctaag ccattgtttt tattgccatt tgggccttgt ttgtaatttt
      721 gatttaaaaa atacttaatg cgatcatcat ctttttgtaa attttgcacc acacttttag
      781 tatcatcact agaattatca tcgcttacaa tgatttctaa atctttaaaa tcttgatttt
      841 gtatgctttt aatagccttt tctaacaaaa cttgacgatt aaaagttggc actataacag
      901 aaagtttagg catttttaac ctcgactata agcttaagcc attcttcttt gatgttagaa
      961 atttcaaagt ctttacacct ttgtttggca ttatttacaa gttcttttct aaaattttca
     1021 tcatttaaaa caagttcaag ttttttagca agtgctattt catcatcaca acctaccaaa
     1081 agcccatcat gattatcttt gattaaatcc ttagcaccat tataataaga acttgaaatt
     1141 ctacaaacct caaaatacaa actttcaatt aaaaccgttg gcaaaccctc tacaaaagaa
     1201 caaaggcaaa gcacttttgc tttttcataa agagccttga cattttcaac gcgtcctaaa
     1261 aaatcaactt ttattcctaa agattttacc ttgtattcaa gttcttgcct taactctcca
     1321 tctcctgcta taacaaattt ataattttct tgcaaatttt tatccaaatg tgctatagct
     1381 tttaaaaaca ttacagggtt tttgttgtga tctaaacgcc ctataaaaag aaccaaattt
     1441 tctttttcaa aactagaatc aaaaggaatt tcatcgctaa aatgacaagg gtttaataaa
     1501 agcttaaccc tttttacaaa tctttcataa tacaccttat cactgcttcc aagcacactt
     1561 aaagcatcac aaaaaggata gcttaccctt cttaaaaaac gccaagtttt aggttttaaa
     1621 tacgcttcat tactatgctc gctaatgatg agtggagttt taagtcctat attagctaga
     1681 atacaagcaa tattagttgt atccaaaaaa gaaataaaaa catcagcctt actttctttt
     1741 aaagcctttc ttaaggcaaa aaatttctta aaacgacttg cgattttatg ataaagcgtg
     1801 tcaaatctaa attgttctaa acttgtaact ttaacttcat tttcaagctt ataaaaagat
     1861 tctcctgtat gaaatttaat aatacttact tcatgctctt tgcaaagcgc attagctaag
     1921 gttactaaaa cacgctcagc gcctcctgaa tttaaagttg cgataataaa gcttattttc
     1981 atcatttctc ctctttaagc ttaccgtgtt ctaaacgata aaccttatca cattgcgtta
     2041 tcgtagaaag gcgatgtgcg ataataatca tggttttatc tttagaaatt ttataaattt
     2101 catccatgat ttttgcttca ctttgagtat caagcgcaga agttgcttca tcaagcacta
     2161 aaatttcagg ctctaaatac aaagcccttg ctatagctat gcgttgtttt tgtcccccgc
     2221 ttaaattact ccccccatcg cctacttttg tctgaactcc ttgaggtaaa ttttttataa
     2281 aatgctctaa atttgcttgt ttgataacct tattaagttt ttcttcatca accgcatctc
     2341 caaaagtgat atttttagct atgctatcat taaaaagata gatattttgc gggatatagc
     2401 ctattttttg gcgataattt tttgcattac ttgcatttaa ttcttgctta tcaattaaaa
     2461 tttgcccttc ttttggtttt aaaagtccta tgataagatc tactaaggta ctttttccac
     2521 aaccactctc ccctataaaa gcgatttttt cacctttttt aatgtttaaa
//
LOCUS       DAEDTT010000137         2559 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.137, whole genome shotgun sequence.
ACCESSION   DAEDTT010000137 DAEDTT010000000
VERSION     DAEDTT010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2559)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2559)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2559
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.137"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..211)
                     /locus_tag="KLC54_001606"
     CDS             complement(<1..211)
                     /locus_tag="KLC54_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177967.1"
                     /translation="MLFGFDDKREFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     LYAKNTKSLKMIFGNFLHNIMHVSFG"
     gene            complement(214..528)
                     /locus_tag="KLC54_001607"
     CDS             complement(214..528)
                     /locus_tag="KLC54_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HBD9177968.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
     gene            699..2123
                     /locus_tag="KLC54_001608"
     CDS             699..2123
                     /locus_tag="KLC54_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HBD9177969.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEITPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSLVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALEHFEKISPDYAKGIKKALEK"
     gene            2180..>2559
                     /locus_tag="KLC54_001609"
     CDS             2180..>2559
                     /locus_tag="KLC54_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HBD9177970.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNANLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGR"
BASE COUNT          953 a          381 c          400 g          825 t
ORIGIN      
        1 taccaaatga aacatgcatt atattatgca aaaaatttcc aaatatcatt tttaaactct
       61 tggtattttt tgcatataaa agaggaattt ttagagcact atcaacgctc gcattatatt
      121 gagttaaaaa agtcaacata agctcttgat tgtttaaata gcgataaatt tgcggtataa
      181 attctcgctt atcatcaaat ccaaataaca tctttaacct ttatagcaag aaaattcttt
      241 attaagatta aaaattttac aatattcaca atacacacaa cttacacttc tttttgcaca
      301 tactaatgga attttgcgct ttttagcttc atttttgatt tttttcatag tattatgatt
      361 taaaaagctt gttaacatta ctatacattc tgtatcacaa ggaatcggct tgcgattaac
      421 tctattttca ttacgtgcat cccagtgttc tattttttta gcacctaaat catgtaaaac
      481 agctctaata ggagtgattt catctgcacc aataaccaaa actgacataa attctccttt
      541 gtgattttta aaatatattt tgataattat tattataata taaaaaaact aaatttattt
      601 tgaaatttat tatcaataaa atgcaattat tcagttaatt ttaattttta atagatataa
      661 tttaccaatt aataaaattt attatttagg agaaaacaat gaaaaaatta actaacgatt
      721 ttggaaacat tatagccgat aaccaaaatt cattaagtgc aggcgcaaaa ggacctttgc
      781 ttatgcaaga ttatcttttg cttgaaaaac ttgctcatca aaatagagaa agaattccag
      841 aaagaaccgt tcatgccaag ggaagtgggg cttatggaga aataaaaatc accgctgatt
      901 tatctgctta tactaaggca aaaatatttc aaaaaggaga aataactcct cttttcctac
      961 gcttttctac tgttgcaggt gaagcaggtg cagcagatgc tgaacgcgat gtgagaggtt
     1021 ttgctattaa attttacacc aaagaaggaa actgggactt ggtaggaaat aacactccga
     1081 cattcttcat ccgtgatgct tataaattcc ctgatttcat ccatactcaa aaaagagatc
     1141 caagaacaca tttaagaagc aataatgctg cttgggattt ttggagttta tgtcctgaaa
     1201 gtttacatca agtaaccatt cttatgagcg atagaggaat tcctgcaagt tatcgtcata
     1261 tgcatggatt tggaagccat acttatagtt ttattaatga taaaaatgaa agattttggg
     1321 tgaaattcca ttttaaaacc caacaaggga ttaaaaatct taccaaccaa gaagctgccg
     1381 agcttatagc aaaagataga gaaagtcatc aaagagatct ctataatgct atagaaaata
     1441 aagattttcc aaaatggaaa gttcaagttc aaattcttgc tgaaaaagat atagaaaaac
     1501 ttggatttaa tccttttgat ttaacaaaaa tttggcctca tagtcttgtg cctttgatgg
     1561 atataggcga aatgattcta aacaaaaatc ctcaaaatta ttttaatgaa gttgaacaag
     1621 ctgcctttag tccaagcaat atcgttcctg gaattggctt tagccctgat aaaatgttgc
     1681 aagctagaat tttttcatat cctgatgcac aaagatatag aataggaact aattatcatc
     1741 ttttgcccgt aaatcgtgca aaaagcgaag tgaatactta caatgtcgct ggtgctatga
     1801 attttgatag ttataaaaat gatgcagctt attatgaacc aaacagctat gataatagcc
     1861 caaaagaaga caaaagctat cttgaacctg atttagtctt agaaggcgta gcacaaagat
     1921 atgctccact agataatgac ttttatactc aaccaagagc tttatttaat cttatgaatg
     1981 atgatcaaaa aactcaactt tttcataata tcgccgcttc tatggaggga gttgatgaaa
     2041 aaattatcac tagagcttta gaacattttg aaaaaatttc acctgattat gcaaaaggaa
     2101 ttaaaaaagc tttagaaaaa taatttttac ttgccacttt tggtggcaaa ctaaagatta
     2161 taataattaa ggaaaaacaa tgacaactct tagtttagaa gaagaaaaaa gatttgaaga
     2221 gctttgcaaa atggctttta attttgcaag aaataatgaa tgtgaaaatc ttaaaatcat
     2281 gatagaagca ggtttaaatg caaatttaaa aactcataaa ggcgatagct tgcttatgct
     2341 tgcagcttat aataattctt atgaaagcgc taaaatgctt ttagaaaaag gtgcaaaagt
     2401 agatgaaaaa aacgatcgtg gacaaacccc attagcggga gtttgtttta aaggatactt
     2461 acctatgtgt gaacttttag ttaaatatgg agcaaatatt gatgaaaaca atggtttagg
     2521 aatgacacct tatacttttg ctattatgtt tggacgcaa
//
LOCUS       DAEDTT010000138         2435 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.138, whole genome shotgun sequence.
ACCESSION   DAEDTT010000138 DAEDTT010000000
VERSION     DAEDTT010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.138"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..961
                     /locus_tag="KLC54_001610"
     CDS             <1..961
                     /locus_tag="KLC54_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HBD9177971.1"
                     /translation="RAYDFFYYLNLAKYFQPIDGMVSVAHMNYWLAKFLSHKNIIFIG
                     QDLAYSKDQSSHAKDFIHEKLHEGHFQKDENLFTSIAYGGKGEVESSYFWKLFREIFE
                     KWISHDNNFINIYNCTEGGARIKGTIEKPFLWACENLLGKDLNKPFPKLNPLNINKQN
                     ELMLKAYNKIYKSIYHCKDFNKKLLQEYNEIKELYLTLENLQIEESKELLNFIIQKID
                     TIKYQIDDAKNMQDLYEILGPLLVQFELNLARIYVLNPKTPEDSFNKSLIWIKEHLEW
                     IEMIYGHIQAQENALFENIIPLEQKLKERKMQKYLRRIKNANK"
     gene            948..>2435
                     /locus_tag="KLC54_001611"
     CDS             948..>2435
                     /locus_tag="KLC54_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HBD9177972.1"
                     /translation="MQTNEIFKKNLEAMQGSTYEKLKYKLKNFQELRNFSFHIGKDPI
                     DINIIDKKHLKKIYQNPIKELEENLKLYQEQYTNYPFLFFYGLGNGILYKALLKNTLH
                     KRIIIIEKELDIIFITLNLIDFSEDLFKGRIIITHTLDYNNNIAELIFGLTEISLFLK
                     TYQINLHSPFYRIYQEDIKKINNINLQTIKYLTLKKGTDPLDAMVGIEQAIWNLPEMF
                     KHYSYKELLDKRKNLSKNAIIVSTGPSLTKQLSLLKQYANKAIIFCADSSYPILAKHN
                     IKPDYVLSLERIPLTSEFFNNDFGEFDKDILFILPGLTHPNSIKYLKKFKKDYMLVAR
                     HLPFALSLDLKEYGYIGGGMSVAHSAYELAILLKCENIILIGQDLAYSKEGKSHTDDY
                     INLALHEKDFERNKGHFTTIAYGGEGEVESSEVWTLFRKIFENYAINNQKYIKTYNCT
                     EGGARIKGTIEKPFAEICKEILTKDIKKPLKKLKKKTKKEQFDKML"
BASE COUNT         1023 a          313 c          339 g          760 t
ORIGIN      
        1 tagggcttat gatttttttt actatcttaa tctagcaaaa tattttcaac ctattgatgg
       61 aatggtaagc gttgcacata tgaattactg gttagcaaaa ttcttatctc ataaaaatat
      121 aatttttata ggacaagatt tagcttacag caaagatcag tcctctcatg ctaaagactt
      181 tatacacgaa aaactacacg aaggacattt tcaaaaagat gaaaatcttt tcacaagcat
      241 cgcttacggt ggaaaaggcg aggtagaatc ctcgtatttt tggaagcttt ttagagaaat
      301 ttttgaaaag tggataagcc atgataataa ttttatcaat atttataatt gcaccgaagg
      361 tggagcaagg ataaaaggaa cgatagaaaa accttttctt tgggcttgtg agaatttact
      421 gggtaaagat ttaaataaac ctttccctaa attaaaccct ttgaatataa ataagcaaaa
      481 tgagttaatg ttaaaagcat ataataaaat ttataaaagc atttatcatt gcaaagattt
      541 taataaaaag ttactacaag aatataatga aatcaaagaa ctgtatttaa ctttagaaaa
      601 tttacaaata gaagaaagta aagagctttt aaattttatt atacaaaaaa ttgatacaat
      661 taaataccaa attgatgatg ctaaaaatat gcaagattta tatgaaattt taggaccatt
      721 attggttcag tttgaactca atttagcgag aatttatgtt ttaaatccca aaacaccaga
      781 agatagtttc aataaatcgt taatttggat aaaagaacac ttagaatgga tagaaatgat
      841 ttatgggcat atacaagcac aagaaaatgc cttatttgaa aatattatcc cattggagca
      901 aaaacttaaa gaaagaaaaa tgcaaaaata cctaagaagg ataaaaaatg caaacaaatg
      961 aaatttttaa aaaaaattta gaagctatgc aaggaagtac atacgaaaaa ctaaaatata
     1021 aacttaaaaa ttttcaagaa cttagaaatt tttcttttca tataggaaaa gatcctatag
     1081 atatcaatat tattgataaa aaacatttaa aaaaaattta tcaaaatccg ataaaagaac
     1141 ttgaagaaaa tttaaaactt tatcaagaac aatatactaa ttatcctttt ttattttttt
     1201 atggtttagg aaatggaatt ttatataaag cgttgttaaa aaatacgctc cataaaagaa
     1261 ttattatcat agaaaaagaa ctagatatta tatttatcac tttaaatcta atagatttta
     1321 gcgaagattt atttaaagga cgcataatta tcactcatac acttgattac aataataata
     1381 tagcagagtt aatttttgga ttaacagaaa tcagcctttt tttaaaaact tatcaaatta
     1441 atttacattc acccttttac agaatttatc aagaagatat taaaaaaatc aacaatatca
     1501 atcttcagac tataaaatat cttaccttaa aaaaaggtac agatcctttg gatgctatgg
     1561 taggcataga acaagctatt tggaatttac cagaaatgtt taaacactat agctataaag
     1621 aattattaga taaaagaaaa aatctcagca aaaatgctat cattgtctca acagggccta
     1681 gtttaaccaa acaactgtct ttgttaaaac aatatgcaaa taaagctatt atattttgtg
     1741 ctgactcttc ttatcctata cttgcaaaac ataatatcaa acctgattat gtattatctt
     1801 tagaaagaat ccccttaact tcagagtttt ttaacaatga ctttggggaa tttgataaag
     1861 acattttatt tattttgcca ggtttaaccc accctaactc aatcaaatat ttaaaaaaat
     1921 ttaaaaaaga ctacatgcta gtggctagac atctaccctt tgctctttct ttagatttaa
     1981 aagaatatgg atatataggt ggtggtatga gtgtagctca tagtgcttac gaattggcaa
     2041 ttttgttaaa atgtgaaaac atcatcttaa taggacaaga tttagcttat agcaaagaag
     2101 ggaaatcaca cacggacgat tatataaatt tagctttaca tgaaaaagat ttcgaacgta
     2161 ataaaggtca ctttaccact atagcttatg gcggagaagg agaggttgaa agttctgaag
     2221 tttggacttt atttagaaaa atatttgaaa attatgcaat caataaccaa aaatatatca
     2281 aaacctataa ttgcaccgaa ggtggtgcta gaataaaagg aaccatagaa aaaccttttg
     2341 cagaaatatg caaagaaata ctcacaaaag atataaaaaa gcctttaaaa aagctaaaga
     2401 aaaaaacaaa aaaagaacaa tttgacaaaa tgtta
//
LOCUS       DAEDTT010000139         2432 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.139, whole genome shotgun sequence.
ACCESSION   DAEDTT010000139 DAEDTT010000000
VERSION     DAEDTT010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2432
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.139"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..383
                     /locus_tag="KLC54_001612"
     CDS             <1..383
                     /locus_tag="KLC54_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HBD9177973.1"
                     /translation="KLRLPFIKKRFGVLEPIDSFFKAKIDLAIVPVIGVDKNLKRIGH
                     GQGFYDRFFENLNYKPHIIFVQSIDALSQNNLTQKHDISGKLYINPYKKYYKKERKND
                     RITYRTYSRYSRTRYRIFSCKKNQ"
     gene            304..1857
                     /gene="rny"
                     /locus_tag="KLC54_001613"
     CDS             304..1857
                     /gene="rny"
                     /locus_tag="KLC54_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HBD9177974.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKIQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQKHIQDLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            1866..2423
                     /locus_tag="KLC54_001614"
     CDS             1866..2423
                     /locus_tag="KLC54_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HBD9177975.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKLALAMMKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFAAYTFGYVIEAIFDKLSLY
                     PYAAPLFLLFLAGIIWLYLSKFSKK"
BASE COUNT          922 a          339 c          431 g          740 t
ORIGIN      
        1 taaaattaag attgcctttt attaaaaaaa ggtttggggt tttagagcct atagattctt
       61 tttttaaagc aaaaattgat ttagctattg tgcctgtaat tggcgtcgat aaaaatttaa
      121 aaagaatagg acatgggcaa ggtttttatg atagattttt tgaaaattta aattacaaac
      181 ctcatataat atttgtccaa agtatagatg ctttaagtca aaataatcta acacaaaagc
      241 atgatatttc aggaaaatta tacataaacc cttataaaaa atattacaag aaagaaagaa
      301 aaaatgatag aatcacttat cgcacttata gccgctatag tcggactcgg tataggatat
      361 ttagttgcaa aaaaaatcaa tgatgccaaa tatgaaattt tcgtagaaca agctaaagcc
      421 aaagccaaag ctatagaata cgaagcggag cttattttaa aagatgcaaa aaattcaatt
      481 cttaatgcag aattagaagt taaaaaaaaa tacgaagaaa aaactcacaa aattcaaaaa
      541 gattttaatc aaaaatttga tgatctttct aaaaaagaac aaaaacttca gcaagaagaa
      601 gaaaaactaa aagaagataa agaatacctt tgcaagtcac aaaaacacat tcaagactta
      661 caatctgatg ttgataaatt aaaaaataaa tatcaagaaa aacttgacga tgttttaaaa
      721 attttagaac attctacagg acttacgcaa aatgaagcca aagaaatcat tcttaaaaaa
      781 gtagaagaaa attctcgcga gcaaattgca catatagtaa gaaaatatga agaagaagca
      841 aaaaatgaag ccaaaagaaa agctaacttc atcattgctc aagctacttc tcgttttgca
      901 ggtgaatttg cagctgaaag acttatcaat gttattaaca ttaaaaacga tgaacttaaa
      961 ggacgtatca ttggtaaaga agggcgcaat gttaaaacct tagaaatggt tttaggtgtt
     1021 gatattatca tcgatgatac accaggtgct attatagtaa gttgttttaa tctttatcgc
     1081 cgtgctattg ctacaaaagt tatagaactt ttagttgaag atggcagaat tcaacccgcg
     1141 cgcatagaag aaattcacga aaaagtgtgt aaagaatttg atagtgctat tctagaagaa
     1201 ggcgaaacca tagttatgga tctaggttta aataaaatac accctgaaat tgtaaaactc
     1261 ataggaaaac tcaaataccg agcaagctat ggacaaaacg ctttagcaca ttctttggaa
     1321 gtggctcacc ttgcaggaat cattgctgct gagtgtggtg gggatgagaa tttagcacgt
     1381 cgtgcgggaa ttttacatga tataggaaaa gcattaaccc acgattttga aggatctcat
     1441 gtggatttag gtgcagaact ttgcaaacgc tataaagagc atcctgtagt aatcaatgct
     1501 atttacgcac atcatggaca cgaagaagct acaagcatag aatcagcagc tgtttgtgca
     1561 gcagatactt taagtgctgc acgacctgga gctagaagag aagtattaga agctttctta
     1621 aaaagagtca gtgagctaga agatatcgct aaaagtaaag aaggaattaa aaatgcctat
     1681 gcaatcaatg ccggaagaga aattcgcgtc atagccaatg ctcagcttgt taatgatgat
     1741 gaaagtgtac ttttggctaa ggaaatagca gctgaaattc aagaaaaaat gcaatatcct
     1801 ggtgaaatta aagtcaatgt tatacgtgaa cttagagctg tagaatacgc taaataaggt
     1861 ttattatgca agatatgatt gatactttaa taaaatatgg ttatattgtt ttattctttt
     1921 actctttagg gggcggaatg gttggaattt tagccgcagg agttttaagt tctcaaggaa
     1981 aaatggatct tagtttttgc attgctcttg cttttattgc taataccata ggttcaactt
     2041 tgctttttat acttggaaaa tattacaaaa aagatattat gccttatttt aaaaaacacc
     2101 gacgcaagct agcccttgct atgatgaaaa caaaacaaca cggaattatt ttacttgtaa
     2161 ctcaaaaatt tatttatggt ttaaaaactt tcattcccat agctgcaggt atggcaaaat
     2221 ataattttat taaatttttt attatcaata ctctagctag tttggcatgg gctattgttc
     2281 taggttttgc tgcttatact tttgggtatg ttattgaagc aatttttgat aaactgagtt
     2341 tatatcctta tgccgctcct ttatttttat tatttttagc tggaataatt tggctttatt
     2401 taagtaaatt ttctaaaaaa taatgtctct at
//
LOCUS       DAEDTT010000140         2408 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.140, whole genome shotgun sequence.
ACCESSION   DAEDTT010000140 DAEDTT010000000
VERSION     DAEDTT010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2408
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.140"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..598
                     /locus_tag="KLC54_001615"
     CDS             <1..598
                     /locus_tag="KLC54_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177976.1"
                     /translation="DLIDGLNKNEFFNLSKFKLENNNVLYLQNEKNHLKNDANYAYSK
                     LKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLIKRFKEGNLELSAAE
                     YEVLLSHNTLSEKDYLNAAKLSTKLLNPDAVLGIFNKIKNEKSEALRAHLYLLAEFGL
                     LDELREQIHNDDKKFNDFKAFLLLREKNIKIDLNQLIQ"
     gene            595..1512
                     /locus_tag="KLC54_001616"
     CDS             595..1512
                     /locus_tag="KLC54_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HBD9177977.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFVSIHGRTRKQLYSGKADYESIASAKASVSIPVIANGDINAQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASAFRDEVNRINDAKIMQEKIESFF"
     gene            complement(1509..>2408)
                     /locus_tag="KLC54_001617"
     CDS             complement(1509..>2408)
                     /locus_tag="KLC54_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177978.1"
                     /translation="KKAAENDPVASSTKEYLGVSEYYTNIDMAETIKQYYNLFSNALG
                     QSFPNDKTSFSEADINSMPSGYAIDGFYNGYGAFKHPDAIRNDDIAIKSIADYSNVLI
                     SNIYRSQEQLNEANSIYSDSAGLISGIKPETLGLSLEEIKNVSKGEDWQFNPDMSVYP
                     QNEDGSYSKEALFMSLIKSQEGRILYSPKTTLNPTIEAYNRAMAKESFSGPAIHLDSI
                     MTGKSDFKSFFRYWAERGIEEGDLYMYENNIPKESAMGNWALDAEIKQAIANGWKAKP
                     STINSYADSIMDRLNNLLGQTRV"
BASE COUNT          878 a          380 c          383 g          767 t
ORIGIN      
        1 agatcttatt gatggtttaa ataaaaacga attttttaac cttagcaaat ttaaactcga
       61 aaataacaat gttttatatt tgcaaaatga aaaaaatcat ctcaaaaacg atgcaaatta
      121 cgcctatagc aaacttaaaa accttaatga aatcaaagat gaatttgaag aaattgcttt
      181 taacactctt atagaaaaag ctagttatga gcaaattaaa aatgtaaaaa tccctaaaaa
      241 gccttctgaa gttctcacac ttatcaagcg ttttaaagaa ggaaatttag aacttagtgc
      301 agcagaatat gaagttttac tttcacacaa tacactaagc gaaaaagact atcttaacgc
      361 agcaaaacta agtactaaac ttttaaaccc tgatgctgtt ttaggaattt ttaacaaaat
      421 taaaaatgaa aaaagcgaag ctttaagagc acatttatat cttttagctg aatttggact
      481 tttagatgag ttaagagaac aaattcacaa tgatgataag aaatttaatg attttaaagc
      541 ctttttactc ttgcgtgaaa aaaatatcaa aatcgatcta aaccaactca tacaatgata
      601 gattttagca aaaaaccttt atttttagcc cctatggcag gtttttcaga tctgcctttt
      661 cgtaatgtag taaaaaaatt tggcgctgat attaccataa gtgaaatgat aagttctaat
      721 gccttagttt atgaaagttc taaaactcta catatgctag aaagagctga attagaaaat
      781 ccttatatag tccaaattgc aggcggagat aaagaagtgc taaaaaaagc agtgcaaatg
      841 ctaaatgaaa tggattttgt agatgggatc gattttaatt gcggttgccc tgtaaataaa
      901 gttgttaaac aatgtgctgg cagtgctttg ctagaaaatt tagagctttt taaaaatctt
      961 gtaggagtga ttaaagaaaa caataaaaaa agccttacaa gtgtgaaatt tcgactagga
     1021 tttaatgaaa aatatcctga aaaaatggct aaaatttgtg aaagcttggg ggtggatttt
     1081 gtaagtattc atggacgcac aagaaaacag ctttatagcg gaaaagccga ttatgaatcc
     1141 attgccagtg ctaaagcaag cgttagtatt cctgtgattg caaatggcga tattaacgca
     1201 caaaacgcta aagaagttta taaaatcaca aaatgcgatg gactcatgat agggcgtgca
     1261 agcgtgggaa atccttggat attttatgaa atcaaaagcg gtaaaagtgt agatgaaaaa
     1321 ctcaaaaaag aaatcatact cactcatttt gatgaaatga taaaacacta caaagatcaa
     1381 ggcgtaagta tatttcgcaa gcatttacac gagtattcta aagggcataa agacgcttca
     1441 gcctttagag atgaagtcaa tcgtatcaat gatgctaaga taatgcaaga aaaaatcgaa
     1501 agttttttct aaaccctagt ttgtcccaaa agattattaa gtctatccat tatagaatca
     1561 gcgtaggaat taatggtgct aggttttgct ttccagccat tggcaatggc ttgtttaatt
     1621 tcagcgtcta aagcccaatt acccatagca gattctttag gaatgttatt ttcatacata
     1681 tataaatcac cttcttctat gccacgctct gcccagtatc taaaaaagct tttaaagtca
     1741 cttttacctg tcataatact atctaagtgt atggctggac cactaaaact ctctttagcc
     1801 atagccctat tataagcttc tattgttgga ttaagtgtgg tttttggact atataaaata
     1861 cgcccttctt gagattttat taagctcata aacaaagctt ctttagaata acttccatct
     1921 tcattttgtg gataaactga catatcagga ttaaactgcc aatcttcacc tttagaaaca
     1981 tttttgattt cttctaagga taaacctaaa gtctcaggtt taattccact tattaatccc
     2041 gcagaatcag agtaaatact atttgcttcg ttaagttgct cttgacttct ataaatattt
     2101 gaaattaaaa cattagaata gtcagctata ctcttaatag caatatcatc atttcttatt
     2161 gcatctggat gtttgaaagc tccatatcca ttataaaatc catcaatagc atatccacta
     2221 ggcatagaat ttatatctgc ttcactaaaa cttgttttat catttggaaa actttgacct
     2281 aaagcattag aaaaaagatt ataatattgt tttatggttt cagccatatc gatattagta
     2341 taatactcgc ttacgcctaa gtattctttt gtacttgaag caacaggatc attttcggca
     2401 gctttttt
//
LOCUS       DAEDTT010000141         2391 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.141, whole genome shotgun sequence.
ACCESSION   DAEDTT010000141 DAEDTT010000000
VERSION     DAEDTT010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2391
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.141"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..499
                     /locus_tag="KLC54_001618"
     CDS             <1..499
                     /locus_tag="KLC54_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HBD9177979.1"
                     /translation="EIYCKKFVLPCFLKHNLKLALKACEILTSQEKTLEALKKLQGLN
                     LQGRCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPII
                     DTIQIYKYKSAERKLADDEIYSIASKLGIQCKEFVKLEENKKNLVFGSFMLVENFLKE
                     WCGKK"
     gene            486..1388
                     /locus_tag="KLC54_001619"
     CDS             486..1388
                     /locus_tag="KLC54_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HBD9177980.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYTIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEAENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVSKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            1325..1720
                     /locus_tag="KLC54_001620"
     CDS             1325..1720
                     /locus_tag="KLC54_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HBD9177981.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGYFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            1720..>2391
                     /locus_tag="KLC54_001621"
     CDS             1720..>2391
                     /locus_tag="KLC54_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HBD9177982.1"
                     /translation="MQASFYEYLQNPKICELLLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFNLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQSQKSIPNELEHFEICPFLKYFDKENYEIFKDKLEDFQSDTLIHDINSL
                     GFWCID"
BASE COUNT          875 a          275 c          434 g          807 t
ORIGIN      
        1 tgagatttat tgtaaaaagt ttgttttacc ttgtttttta aagcataatt taaagcttgc
       61 attaaaggct tgtgaaattt taacttcgca agaaaaaacc ttagaagctt taaaaaagtt
      121 acaagggtta aatttacaag gaagatgcca agaaatttct ccaaattttt ttgttgatgt
      181 gggtcataat cccatggctg ctaaggctat gcttgataaa tttcaaggag agaaaataaa
      241 tcttatttat aatgcttatt tggataagga tatttttcaa attttaaata cattaaagcc
      301 tattattgat acaatacaaa tatataaata taaaagtgca gaacgaaagc tggctgatga
      361 tgaaatttat agtattgcat caaagctagg catacaatgc aaagaatttg taaaattaga
      421 agagaataaa aaaaatctag tttttggttc ttttatgctg gtagaaaatt ttttaaagga
      481 gtggtgtggt aaaaaataaa ttcactatta ccattacaga tattaacggt tcaagacatt
      541 tttatttaaa tcaaataatc aaaaaaatag ttttttatac tattgctttt attgttttat
      601 ttttagtttt tagtggtttt tatatcaaat atctcgatag caaacttagc gatatcagtg
      661 aaaagcgtga ggagcttttg aaaaaaagca aagaattgga attatctaat tcgcaaatgc
      721 aaaaaagcat agaagaaaaa actcagcagt atgcagctat agaagataaa atagcttctt
      781 ttgaagaggc tttgggctta gaagcagaaa ataatcttac aattagtgca agacttgata
      841 atcttcagct taccaatgag cagcaacttg gaattttggg acaaattcct aatggatggc
      901 ctattgaaaa taaaggcatt acaggaaatt ttggctggag agagcatccg cttttaaaaa
      961 gaagggaatt tcatcctggt attgatttaa gagcagaaat tggtactcct atttatgcac
     1021 cagcaagtgg agtagtggaa ttttcaggtt atagtgataa tggctatggc tataatgtaa
     1081 ttttattgca taattttggt tttaaaacag tatttgctca tatgatgcgc aaagaagtag
     1141 tcaaagcagg tcaatttgtt agcaaggggc agttgatagg ttatagtggc aatacaggtc
     1201 tttctacggg gccgcatttg cactatgagg taaggtttat taataaaact ttagaacctt
     1261 tgtatttttt aaatttgcaa agaaaaaata tgaatgattt ttttaatcaa gaaaggagag
     1321 ttccatggca atctttaata aaggcggtat cagcccaaca tccagctcta gctcagaaac
     1381 aacagtaatt tcttcaggtg cgagaattga gggtaaattt tattttgctt ctatgcttca
     1441 tgttgatgga gagttaagtg gtattattca ttctgaaagc attgtagtta tcggaaaaaa
     1501 tggaaattta aaaggtgaat tacaagcaga taaaattgta gtaaatgggt attttgaagg
     1561 gcaacttgag gccaatagtt tagaaatttt agcgggcgga gttgttaatg gcgatatttc
     1621 aacgcaaaaa atttctatag aaaatggcgg tcgctttaat ggaactagta aaattaaaga
     1681 agatactatc aaacttattg aaaataacaa cgaagaataa tgcaagcttc attttatgaa
     1741 tacctacaaa atccaaaaat ttgtgaactt ttgctttgta aagatgaaaa acaagcagat
     1801 ttacttgctc aagtttcacg atttaagggg ttaaaaacct ttgttttacc tgattttaga
     1861 gcgcagtttg gagatgattt aagggctttt tccaaagaac tttttgatct ttgcaagatt
     1921 ttaaatgctt atcataaaga agaagaaaaa aaaatcctta tttctccttt aaatactgtt
     1981 ttaaaaaaac ttccttcaaa aaaacatttg caaaattatc atatcgataa aaaacaaaat
     2041 tttaatttga aatgttttga agatgaaatt tcaagattgg gatacgaatt tgtagatata
     2101 gttcaggata aaggtgaaat ttcaattcgt gcggatatta ttgatatttt ttgtatcaat
     2161 gaagaaaatc ctattagaat tttgcttttt ggcgaagaga ttgaaagtat aagatatttt
     2221 gatttgcaaa gtcaaaagtc tattcctaac gaactagaac attttgaaat ttgtcctttt
     2281 ttaaaatatt ttgacaaaga aaattatgaa atttttaagg acaaattaga agattttcaa
     2341 agtgatactt taatacatga tatcaattct ttagggtttt ggtgtattga t
//
LOCUS       DAEDTT010000142         2239 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.142, whole genome shotgun sequence.
ACCESSION   DAEDTT010000142 DAEDTT010000000
VERSION     DAEDTT010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.142"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            34..1098
                     /locus_tag="KLC54_001622"
     CDS             34..1098
                     /locus_tag="KLC54_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HBD9177983.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFRNNTVRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
     gene            1088..>2239
                     /locus_tag="KLC54_001623"
     CDS             1088..>2239
                     /locus_tag="KLC54_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HBD9177984.1"
                     /translation="MTLENYAIFGKYFYHDLKHTLKAFNHKESKKCFKFIEKYKNDFY
                     ILMLADYELYRYFQDKNFTSKKAYLSVFAFKKRKKFQKEDIDEEKFIPEFINFLDQDN
                     YKENFIKVKEAISKGRVYQINLTQNFKFHSKMDSFELFKLLLSRQDTEFKAFIKDETR
                     EILSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKTFLQNDTKNLSENVMICD
                     LLRNDLSKIITKKSLKTKLFEIQSHPTLHQMTSSVQGKLKKNISLYQIFKALFPCGSI
                     TGAPKLESIKFIEELEQRDRGIYCGTIGLIHKNKNKFSVAIRTLEKQDEIYTYSTGSG
                     LVWDSKFKDEFEELKLKSAILNPCDFHLFETMYFKNSQILFLKEHLLRLI"
BASE COUNT          902 a          299 c          320 g          718 t
ORIGIN      
        1 aagctaaaaa ttttagattt aggaaaagtt tttatgaaat accctttaga ttgtgaagaa
       61 aattttgaaa aatcattctt attttggcta gcaaaatatg taaaatttaa actcaactca
      121 ctatctaaca aagagttaaa aaatccacaa gctttagcag aagttaattt tgctcttaca
      181 aaaggtgtaa aaaacattga tgaacttgac gctctagcaa aaaaagcaag aaatgctggt
      241 ttaagtggag ttaatactta ttttaatcct ttaaaaaaag tattcgaata tttaaatttt
      301 tacaagcttt attctttaaa acagattgat gaagaactca ttgtagaagt tttagcaagt
      361 ataacaggtg ctttatcaga tgcaagtaaa aaaaattacc gtattgctgt gattaatttt
      421 tttgattttt tagacaagca aaatgaagaa gatgaaaaag cgcatatttt cgatatcaat
      481 cttaaaaact gggcaggtat agcgggttct aaaggggtaa aattacctga atttatgagc
      541 gaagaagagc ttaaaaaatt tcttgatgct attgaaaatg cagattttag aaacaatact
      601 gtacgcaata aacttattat taaaatcatc atttttacag gcatacgggt aagcgaagct
      661 atcaatatca aaatgggtga tattagcgaa gaaaatgatc tttatatcat aagaataaga
      721 gctaaaggca ataaatatcg tgttgtaatg ataaaaaaag aacttattta cgatttgctt
      781 aaaaatgtaa gtattaatta tatgagcaaa gacgccctac tttttgtcaa taaaaaaggc
      841 actccactga ctcaatctta tgtcagtcgc atagtagaac agcttttatt tcgtgcagga
      901 attcgcaaac aaaaaaatgg tgctcacatg ttgcgtcata cttttgccac cctactttat
      961 aaaaaacaaa aagatttagt tttagttcaa gaagctttag ggcatgcaag tttaaatacc
     1021 tcaagaattt acactcattt tgataacgat aaattaaaac ttgccgcaca ggttgcaaag
     1081 gaattaagtg actcttgaaa actatgctat ttttggtaaa tatttttacc atgatttaaa
     1141 acacacttta aaagccttta atcacaaaga aagtaaaaag tgctttaaat ttatagaaaa
     1201 atataaaaat gatttttata ttttaatgct tgctgattat gagctatata gatattttca
     1261 agataaaaat ttcacaagca aaaaagctta tttgtctgta tttgctttta aaaaaagaaa
     1321 aaaatttcaa aaagaagata tcgatgaaga aaaatttatt cctgaattta taaatttttt
     1381 agatcaagat aattacaaag aaaatttcat caaggttaaa gaggcaatct ccaaaggaag
     1441 agtttatcaa atcaacctca ctcaaaattt taaatttcat agcaaaatgg attcttttga
     1501 actttttaaa cttttacttt ctagacaaga tactgaattt aaagctttta taaaagatga
     1561 aacaagagaa attttgtcct tctcacctga acttttcttc aagaccaaaa aaagaaaaat
     1621 atttacaaaa cctatgaaag gcacaattaa gcgtgataaa gatcctataa aagatgaaga
     1681 aaataaaacc ttcttgcaaa atgatacaaa aaatctaagt gaaaatgtta tgatttgcga
     1741 tcttttacgc aacgatcttt caaaaatcat cacaaaaaaa agcttaaaaa ccaaactttt
     1801 tgaaattcaa agtcacccta ctttacatca aatgacttca agcgtacaag gaaaacttaa
     1861 aaaaaatatt tctttatatc aaatttttaa agctctcttt ccttgtggtt ctattacagg
     1921 tgctccaaag cttgaaagca ttaaatttat tgaagaatta gaacaaagag atcgtggtat
     1981 ttactgcgga actataggtt taatacacaa aaataaaaat aaatttagcg tagccatacg
     2041 caccttagaa aaacaagatg aaatttatac ttatagcacg ggtagtggct tggtttggga
     2101 ctcaaaattc aaagatgaat ttgaagaatt aaaacttaaa agtgcgattt taaatccttg
     2161 tgattttcat ctttttgaaa ccatgtattt taaaaattct caaattttat ttttaaaaga
     2221 acatttatta aggcttata
//
LOCUS       DAEDTT010000143         2080 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.143, whole genome shotgun sequence.
ACCESSION   DAEDTT010000143 DAEDTT010000000
VERSION     DAEDTT010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2080
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.143"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            58..778
                     /locus_tag="KLC54_001624"
                     /pseudo
     CDS             58..778
                     /locus_tag="KLC54_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            708..>2080
                     /locus_tag="KLC54_001625"
     CDS             708..>2080
                     /locus_tag="KLC54_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177985.1"
                     /translation="MGVENIYTLPLNGVPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDKRITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNISKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLNKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISDNF
                     YGKNYYNLYGGFATEGANFNVIDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNIL
                     SIKDSVISLPLYAFITSETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINAKNVSN
                     NKINYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKES
                     AFNKIIINNTAFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAP
                     SGTSDIS"
BASE COUNT          777 a          272 c          334 g          697 t
ORIGIN      
        1 gttgcaaata atcaatttgc gataaatcaa aaggatttta ttttagtgag aaatgagatg
       61 aaaaaatatt ttaatatttt taaaattttt acaaataaga caaatgcaaa atttggcttg
      121 ggcgtttgta gtgtggtttt atcttcttcg gtttgttttg cggcggttca ggctacaagc
      181 aaggatggaa aaatttttta tatttctgaa cattctttta aggataatca agtttatgat
      241 tttcaagcag aaatttttaa aaaaaattaa tggaaaaaat ttctatgctt ctaagtcaaa
      301 atatcctata ttaaatttaa ctatgattta taataaccct aaatctggaa ataaaaattt
      361 atgcaagctt gaaattttaa ctccggatac ttcaaaagaa gagatcataa cagcttttag
      421 cactttagga accgtatctt cagatactca agccgttcct agttctttta tgccttttat
      481 tgtaacagct tatgctcaaa atacaaatgc aacaaataat aaacttatat tagaaaatgg
      541 agaattatct tctgtgtatt tttgcaaacc aagcataggg gattgtggag tacctaataa
      601 ttctcaaaaa ggcgatcgtt ttaagtattt aattactgcg gcgtttactg acaggggggg
      661 gggatttaac aatcaaacca ttttaaaaga aaactcctat atcaataatg ggtgtagaaa
      721 atatctacac cttgccctta aatggagttc cttatatttc aggatctgta gcttttgatg
      781 gtgaagctaa agacaataaa ttaatcttag agtcaaatac aaaaattgac cttcataatt
      841 cccagtattt ttcagatgaa gaaggtaagg atatttatga taaaagaatt actcgtttaa
      901 tgggagcttt tggcataaat tctaatttac aaaacaataa agttcttatc gattcagcca
      961 atatcgtcct tcatgggcca gatggtgagt atacagctcg ttcgaccttt gaaattttgg
     1021 gtgctttagc tgatgtaaat aatcttaaaa aatacaatat aagtaaaaat tctgtaataa
     1081 ttaaaaattt aaatttagat ttaatggtaa attcgcaaaa taaaataact ttttatgatg
     1141 ctgttttatt tggagaaatt tacggtggaa gaacattaca gggtaatgca gagaaaaatt
     1201 ctatagaagt ttatcatttt aactcattag atcatcttaa taaaaacatt aaaacacatg
     1261 catcgttaaa cctctatggt gggtattcta acgatggtga agctaatgga aataaaattg
     1321 tatttcgcct taaaaaacct ttaaaaatca gtgataattt ttatggaaaa aattattaca
     1381 atctttacgg aggttttgct acagagggtg cgaattttaa tgttattgat atacaaaatg
     1441 atttaaccta tgaaaaagtt ccacaaaatt attctgataa atttactgta tatgcggcaa
     1501 gaactttaag cggaaaagca aataataata tcttaagtat aaaagattct gttatttcat
     1561 tgcctttata tgcttttatt acaagtgaaa ctacgctaga tggtatagac tatatcgccg
     1621 atgaatcaaa caataatgaa gtaaattttg aaaatattaa atcatctaaa aatttaagtt
     1681 tgatgatcaa tgctaaaaat gtttcaaata ataaaataaa ttataatctc attcagagtt
     1741 taaccgaagc gagttcttta ggaaagggct caaaaattat tttaaaagca actcaaaatg
     1801 caaataacaa ccttataaag cttaaagatt gttcttcggc tgccgtggaa agttcgtgca
     1861 tcataaaagc agataaagaa agtgctttta ataaaatcat catcaacaac acagctttta
     1921 gtactgcctc ggataaaaga caaggttatg tggggttgat agctggagtg tctgcaaatt
     1981 ctcatgataa tatcatggaa cttgttaatt taaatataga tgagtataaa aatcaagatg
     2041 ctatattttt agctccatct ggaacttcgg atatttcaaa
//
LOCUS       DAEDTT010000144         2062 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.144, whole genome shotgun sequence.
ACCESSION   DAEDTT010000144 DAEDTT010000000
VERSION     DAEDTT010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2062)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2062)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2062
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.144"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1447
                     /locus_tag="KLC54_001626"
     CDS             <1..1447
                     /locus_tag="KLC54_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HBD9177986.1"
                     /translation="STIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGKARIL
                     ASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFVLCVVWIMVIFITNNF
                     LMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARLKKKN
                     STLGNLFNNLSNNWTNVTLLALVGVEFYLALKFEWASVADATTIALSILFLRTPLVSM
                     IGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENFHLNP
                     VNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKKLDEYRSLI
                     SAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKDKTSVKDNELTLTKLSTGQKKRL
                     AMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAYFDSA
                     DRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(1467..1889)
                     /gene="cgb"
                     /locus_tag="KLC54_001627"
     CDS             complement(1467..1889)
                     /gene="cgb"
                     /locus_tag="KLC54_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HBD9177987.1"
                     /translation="MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYSKIAEFYIDIEKKLYDK"
BASE COUNT          700 a          265 c          340 g          757 t
ORIGIN      
        1 ttctaccata gttgaacttg gacttagtat ttttggacaa aattttattt ttaaaatgca
       61 aaggcgcgta gtaaagcaga tcttagacac ccctttgtta agagtggcta aagtaggtaa
      121 ggctagaatt ttagcttctt tgggaagtga tgtgagaaat atatcttttg ggcttttaag
      181 attgcctgat tttttacaat caagtatatt gattttatgc actagtgttt atttatgtta
      241 tctttcacca caaatttttg ttttgtgtgt ggtatggatt atggttattt ttattactaa
      301 taattttttg atgatgaaag tatatcagta ttttagaaag gcaagggaaa atgatgatgc
      361 tttgcaaaat aattaccaaa atatactaga tggacataaa gaacttttga tcaatcgtga
      421 cagagccaag ctttactatg aagatgaatt tgaaaataat gcaagattga aaaagaaaaa
      481 tagtacttta ggcaatcttt ttaacaatct ctcaaacaac tggacaaatg taactctttt
      541 ggctttagtg ggtgtagagt tttacttagc tttaaaattt gaatgggcaa gtgttgcaga
      601 tgctacaact atagctcttt ctattttgtt tttacgaacc cctttagtat ctatgatagg
      661 atcttttcct actttgcttt tggcaaaaat tgctttagat aagatcgcaa aattggaatt
      721 agatgattat atagaaggtt ttaaaaaaac acattatatt agcgaatgga aaaaaatttc
      781 ttttagaaat actcaatttg cttatgaaga aaattttcac ttaaatcctg taaatataga
      841 acttaaaaaa ggtgaattgg tatttttaat aggtaaaaat ggaagtggta aatccacttt
      901 ttgtatgctt ttgacaggac tttttaagcc aagcaaaggc ggaatttatg ttgatgatac
      961 gcttatagat gataaaaagt tagatgagta tagatctctt atttctgctg tttttagcga
     1021 ttttcatctt tttactaaaa ccttaaataa agaaaatttt gcaagcgaag aaaaaattgc
     1081 tttttggttg gagtttttag aacttaaaga taaaacaagt gtcaaagata atgaactgac
     1141 cttaaccaaa ctttctacag ggcaaaaaaa gcgtttagct atgcttatag ccttgcttga
     1201 agaaagggat attttggtgc ttgatgaatg ggcggctgat caagatcctg tttttagaag
     1261 atttttttat aaaaaacttt tacctttgct aaaagagcaa ggtaaaacaa tctttgctat
     1321 cacacatgat gatgcatatt ttgatagtgc tgatagaatt ttcttggctc aaaatggtga
     1381 aatcagcgaa ttaaagggtg agaatataaa ggaattagct aaaaatttag tagaaaaatt
     1441 tgattaaagc ccaaaatggg cttatattat ttatcataga gctttttttc tatatcgata
     1501 taaaattcag caattttact ataagcaact tcccaagctt taagagtggc ttcatcagga
     1561 tttaaaagat ttttaatagc ctttaaaagg caagctccaa ctataggata atgctcttct
     1621 ttaaccccta aattaacatg agttatggca actttatcaa caaagcttct catattttcc
     1681 aaattttcta tgtttttggc tgccattaaa atcgccatcg ctaaagcttt tggttgttct
     1741 cctgaaattt gtttttccat attaaacata ggttttacct caggataatc attaaacatt
     1801 attttataaa actcattggt taaatcctct ccattttttt gcaaaatagg cacacaatct
     1861 ttgatgattt gaatttgttc ttttgtcata atttctcctt tttgttgtaa aagagatatt
     1921 ttatatctta aaaaggagaa aaaaattgac ctgtgttaaa attttgtatt tagttgattg
     1981 aaaaaatctt gcattaacat tgttaatgct ttataaaaat gtgttttagc tttattgata
     2041 acatcaaaac tccacatatt aa
//
LOCUS       DAEDTT010000145         1968 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.145, whole genome shotgun sequence.
ACCESSION   DAEDTT010000145 DAEDTT010000000
VERSION     DAEDTT010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1968)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.145"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..404)
                     /locus_tag="KLC54_001628"
     CDS             complement(<1..404)
                     /locus_tag="KLC54_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HBD9177988.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGILDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDIHQIS
                     NAILQVSEPRKPCVKISKIHNNSNFTHEIFKTG"
     gene            complement(401..>1968)
                     /locus_tag="KLC54_001629"
     CDS             complement(401..>1968)
                     /locus_tag="KLC54_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HBD9177989.1"
                     /translation="YLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPN
                     LLLEHFAKNTTNLIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKTQKTDKK
                     TKIESEESSIANFLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKF
                     SKKYSFFLSFIYVFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAM
                     FGAFRFELPLRFQTFIHKKSEKGKGVLGIAIMGFLSALIVGPCVAAPLAGALIYIANT
                     GNALLGGSALFIMSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSR
                     IIEENYILIAYGILGVFFSVFMGIFEKSFTIISKIKKSILILILAYSLSIFLGGLFGA
                     KNFLNPLNFNTISASKSALSYDYINNFEQLKQEIQTNTKPIMLDFTASWCENCKLLDE
                     LTFSDERIIQKMQNYKLIKVDVSENNNEQIKTMKEFNVFGPPVLIFFENGKEKLKITG
                     FISADDLLKKLEP"
BASE COUNT          723 a          287 c          265 g          693 t
ORIGIN      
        1 cccgttttaa aaatttcatg tgtaaaattt gaattattgt gaattttaga aatttttaca
       61 caaggttttc taggttcgct tacttgcagt attgcatttg aaatttgatg tatatcacct
      121 atgcaaacat tttgttcaca aagcccatcg atgctcaaat tttcacccat tgagccaaaa
      181 tttagctttt tattaagaaa tctttcccat ataggatagt tttgacaaga gttggcaaaa
      241 atagccttat ggtagcctcc atgatgaatt ttatcagcta tttgatcatc taaaatacct
      301 agaaaatcaa tttgtgtttc ttctaggtaa gtatctttaa taaatgcgct ttggaaattt
      361 ttatagtttt taattttccc tatttgcaaa ctttgaattt tcatggttct agttttttta
      421 ataaatcatc agcactgata aaacccgtga tttttaattt ttcttttcca ttttcaaaga
      481 aaattaaaac aggtgggcca aaaacattaa attctttcat ggttttaatt tgttcattat
      541 tattttcgct tacatcaact ttgataagtt tgtaattttg cattttttgt atgattcttt
      601 catcgctaaa ggttaattca tctaaaagtt tgcaattttc acaccaagat gcagtaaaat
      661 caagcattat gggctttgta tttgtttgta tttcttgctt taattgttca aaattgttaa
      721 tataatcata gcttaaagca gattttgagg cagatatagt attgaaattt aaaggattta
      781 agaaattttt agccccaaaa agtcccccta ggaaaatact tagagaataa gctaaaataa
      841 gaattaaaat acttttttta attttagaaa ttattgtaaa acttttttca aaaattccca
      901 taaaaacact aaaaaataca cctaaaattc cataggcaat taaaatgtaa ttttcttcaa
      961 taattctaga aagtatccaa atagccatag ccaacataac aaaaccaaag aaaattttta
     1021 ctttttccat ccaaaaacca ggtttaataa aacctaatcc taagcctatg aaaagcaaag
     1081 gtatacccat gccaaaactc atgataaaaa gcgcactacc gcctaataaa gcattgcctg
     1141 tattggctat ataaattaaa gcacctgcta aaggagctgc tacgcaagga cctactatta
     1201 aagcagataa aaatcccatg atggctatac ctaaaactcc tttccctttt tcgctttttt
     1261 tatgtataaa ggtttgaaat cttaatggca attcaaaacg aaaagctcca aacatagcaa
     1321 aagcaaaagc tatgaaaatt agagcaaaaa gaattaaaat aataggtttt tgtaaaattc
     1381 cttgaatact tgctcctaga aaacttgcta taactccagc aatagcatag gctaaagaca
     1441 tgaaaaaaac atagataaaa gagagaaaaa aactatattt ttttgaaaat ttagcattac
     1501 tttttgctac gataagagaa gataaaatcg gaatcatagg taaaatacaa ggtgttaagg
     1561 agagtaaaag tccatagcca aaaaaactta gcaaaatcca aaaaaagtta tctgttgcta
     1621 aaaaatttgc tatagagctt tcttcagatt caattttagt ttttttatct gttttttgag
     1681 ttttgtaagg ttttgaaatt tcaaaagcat cttttttaga aatgagatca aagtaccaag
     1741 tttgaggatt ataacacaag ccttgttcag aacaaccttg aaattcgagt ttgattaaat
     1801 ttgtggtatt ttttgcaaag tgctctagta ataaatttgg caaagctaaa tttaattttt
     1861 gataataaac attttcatta cctcttgtag aactttgagg tagattaatc aaagaactta
     1921 tatctttttc gtttatatat aatttaagtt tattagaata aagataaa
//
LOCUS       DAEDTT010000146         1962 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.146, whole genome shotgun sequence.
ACCESSION   DAEDTT010000146 DAEDTT010000000
VERSION     DAEDTT010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1962)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1962)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1962
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.146"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..1311
                     /locus_tag="KLC54_001630"
     CDS             <1..1311
                     /locus_tag="KLC54_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HBD9177990.1"
                     /translation="NNEKFFTFVLKNIETICTWLNSSEFKNRYLSIKHPYPPLINPNF
                     IEIDASRHCAELAWDLNLPLPKHYKFIYISPHGVGAAAFLRYLNQCCDVTCFASWVLP
                     PDAKERYCLNYMCLNDNTITQYAINISEINLPYFDKYLSLLDFNSKIICGVRDPIGIL
                     KHNWGRDWSKVLRNYPSEFNLTYDWRYYIDYLTHQNHKIKIDINELQQGVFIISYLLK
                     YFNKDNVYYLDMEEIRQSKAFDTMNLLAINFNFTPPHKDKLDLFKIKEFRGYIRYLFP
                     ITLYANSKDINNTFYLNTPKNNKNFNIDKTSSIPIILDRKHINHEKIDIIQEIIKNDL
                     CNDMGVYIDKNDFKQLEQNNLLFSTIKHYLYDFLYQIKITIDETESKMMKEKDVIDYF
                     IKNKSLVYTFFNIFENDLNHLKQKFPNIINSWTYYKEFEKCVKS"
BASE COUNT          758 a          260 c          220 g          724 t
ORIGIN      
        1 aataatgaaa aattttttac ctttgttttg aaaaatattg aaacaatttg cacttggctc
       61 aattctagcg aatttaagaa tagatattta tcaataaaac atccttatcc acctttaatc
      121 aatcctaatt ttatagaaat agatgctagt cgacattgtg cagaattagc ttgggattta
      181 aatttacccc tacctaaaca ctataaattt atctatattt ctccacatgg cgttggagca
      241 gcagcatttt taagatacct taatcaatgt tgcgatgtaa cttgttttgc ctcctgggtt
      301 ttaccacctg atgccaaaga aagatattgt cttaattaca tgtgtctaaa tgacaatacg
      361 attactcaat atgctattaa tatatcagaa attaatctac cttattttga taaatatcta
      421 tctttattgg attttaactc taaaattatt tgcggagttc gcgatccaat aggaatttta
      481 aagcataact ggggaagaga ttggagtaaa gttttaagaa actatccctc tgaatttaat
      541 ctaacttatg attggcgtta ttatattgac tatcttactc atcaaaatca taaaattaaa
      601 atcgatataa acgaactaca acaaggagtt tttatcatct cttatttatt aaaatatttt
      661 aacaaagaca atgtatacta tcttgatatg gaagaaatcc gccaatcaaa ggccttcgat
      721 accatgaatt tacttgctat aaattttaat tttacccccc cccataaaga taaattagat
      781 ttatttaaaa ttaaagaatt tagaggttat attcgctatc tttttcctat cacactctat
      841 gcaaattcta aagatattaa taacaccttt tatcttaata ctcctaaaaa taataaaaat
      901 ttcaatattg ataaaacttc tagcattccc ataattttag acagaaaaca tatcaatcat
      961 gaaaaaatag acataataca agaaattata aaaaacgatc tatgtaatga tatgggtgta
     1021 tatattgata aaaatgattt taaacaatta gaacaaaaca atcttttatt ttcaacaatt
     1081 aaacattatt tgtatgattt tttatatcaa attaaaataa ccatagatga aacagaatca
     1141 aaaatgatga aagaaaaaga tgtaatagat tattttataa aaaataaatc acttgtttac
     1201 acttttttta atatttttga aaatgatcta aatcatttaa agcaaaaatt tcccaatata
     1261 attaactctt ggacatacta taaagaattt gaaaaatgcg tcaagagtta gatgacaata
     1321 ttcagggaaa agatgtaagg ggtattttaa aaagagtatg taactatccc taaataattt
     1381 tagcaaaaaa taccaaataa taggatttta aagcttacaa aaatgacttt ttatctttcc
     1441 tagtttaaag tgtaaaaaat cccaaatatc ccaaaaatcc caaaatgtct gttttatccc
     1501 aaaaaaactg attaaatgct gtttaaaagg cggataaata cgagctttga ttttaaattt
     1561 tatatcccaa aagtgttttt tactctctag gatagttaca tttttgctta aaatattctt
     1621 atatttttta accttgtaac tatctctata aaacactata taatcatact ttaaccactt
     1681 tttatataaa aatagtatgt aactatctat agctttaagg tttggaggat agttacatag
     1741 aaaacttaaa catttagttg gtttttataa tcttataata gactaagatt acttcaattt
     1801 atttaaaaat tatttttatt tttgatttta ttttttaact ttgatgataa cttttgccaa
     1861 ttataatgtt ttttaaaaga taaatataaa gagtgattaa cttttataga aatatatagc
     1921 tatatttagt tttaggtttg taaatatagc tacattattt tt
//
LOCUS       DAEDTT010000147         1945 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.147, whole genome shotgun sequence.
ACCESSION   DAEDTT010000147 DAEDTT010000000
VERSION     DAEDTT010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1945)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1945)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1945
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.147"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            29..103
                     /locus_tag="KLC54_001631"
     tRNA            29..103
                     /locus_tag="KLC54_001631"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:61..63,aa:Asn,seq:gtt)
     gene            complement(193..564)
                     /locus_tag="KLC54_001632"
     CDS             complement(193..564)
                     /locus_tag="KLC54_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HBD9177991.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSAIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLQEDSNDNELGDFDFAIEALEELKD
                     GDYQKASKKIDKIVKNLKQTK"
     gene            complement(575..1174)
                     /locus_tag="KLC54_001633"
     CDS             complement(575..1174)
                     /locus_tag="KLC54_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HBD9177992.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFELAAKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEHPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKHS"
     gene            1322..>1945
                     /gene="dccR"
                     /locus_tag="KLC54_001634"
     CDS             1322..>1945
                     /gene="dccR"
                     /locus_tag="KLC54_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HBD9177993.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKE"
BASE COUNT          652 a          267 c          283 g          743 t
ORIGIN      
        1 actataatca cattttactt ttaaatattc cggattagct cagcggtaga gtagtcggct
       61 gttaaccgat tggtcgtagg ttcgaatcct acatccggag ccactttttt aactccattt
      121 ttaatattca taaatgtatt ttaatataaa aaattaataa gtctttatca caaaaaattg
      181 tgataaagtt ttttattttg tttgtttaag atttttgaca attttatcta tttttttact
      241 tgccttttga taatccccat ctttaagttc ttctaaagct tcaatagcaa aatcaaaatc
      301 accaagttcg ttatcgttag aatcttcttg gagatttttg acaattttat ctattttttt
      361 acttgccttt tgataatccc catctttaag ttcttctagg gcattaacag caaaagaaaa
      421 atcttcaact tcattaagat aagcctctat ggcttctttt actatggctg attttggttt
      481 agaaagattt ttacttaaat tatccaaacg ctccttaagc tctaaaggca ttctaaaaga
      541 ataagttttt acattgcgtt tcattttatc ctccttaaga atgttttttg taaaatttta
      601 tagcttgttt acaagtttta caagtaaatt tatgaccttg taattctatt ttttgatgaa
      661 tgctataagg aacatcgtga attttaccag gacaattaca ggtataaaga taaaattgtg
      721 gatgctcatt atcttcatct tctgctgctt caaagctaac atcaccacca tcatctgtag
      781 acaaagaaga acttctccat ttttcaactt tcatgtcttc atatagtata tgttctaaaa
      841 gccacttttt agccactata taaagttttt ctttaagatc attggttgat ttgatatctt
      901 tgatcaagtt gatcatggtt tggatgattt ctttatgtat ttttcgatgt tcttctaaat
      961 ttggatagcc tattagctgc atgtattttt cttcatcatt aaagtgatct ttcatataat
     1021 taaaaaattc agccaaaagt tctttgactt catttttact tacagatcta tctgatacaa
     1081 cttcaacttt tgcagcaagt tcaaaaagct ttttatgttg ctcatcaatt ttagcattgt
     1141 gcacactata gctgttatcc cattttggaa gcattttaac tccttaagga aaaatttatt
     1201 tgtataaaag gattatagat aaaaataaat taaataaaaa tgaaatttta ttaaataatt
     1261 gataagaatt ttgatacaat gatatatatt taagagattt gaagttagaa agatttaaat
     1321 tatggctgct aaaattttac ttttagaaga tgatttgagc ttgagtgaga tcattgaaga
     1381 gtttttaaac gatgaaggat atgaagtatt tttatgcgat aatgcacaag aagctttaga
     1441 tatggcttat gaaagatatt ttgatctttg gattttagat gtaaaagttc ctttaggaga
     1501 tggattttca ttacttaaag aattaagaaa aagcggaaag caaactccag caattttcat
     1561 gacttcttta aacacaacaa acgatttaaa acaaggcttt gacgcaggtt gtgatgatta
     1621 tataaaaaaa ccttttgaac ttgccgagtt atctatcagg gttaaagctt tgcttaaaag
     1681 agctttttca cataaaaatg aagattttga agatttagga gatggattta gatttgaatt
     1741 tactacacaa attctttacc ataataataa agccttgact ttaccgagta aagaaattaa
     1801 gcttttgtct ttattactta aaaataaaaa caacttttta agcacagaga gaatttttga
     1861 agaactctgg gattatgatg aggagcctag tgagctaagt ttaagagctt atgtaaaaaa
     1921 tttacgtaaa attttaggaa aagaa
//
LOCUS       DAEDTT010000148         1917 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.148, whole genome shotgun sequence.
ACCESSION   DAEDTT010000148 DAEDTT010000000
VERSION     DAEDTT010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1917)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1917)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.148"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            34..792
                     /gene="xth"
                     /locus_tag="KLC54_001635"
     CDS             34..792
                     /gene="xth"
                     /locus_tag="KLC54_001635"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HBD9177994.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEKIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFDSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMKFYVDFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            complement(811..>1917)
                     /locus_tag="KLC54_001636"
     CDS             complement(811..>1917)
                     /locus_tag="KLC54_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177995.1"
                     /translation="SLSNLSKDEASDLLEDLSFNLAYKQISHNPHETKKVLNSLLVEF
                     LTILKKLDFFDDENVTKVIKALVKASIVDAQNSLYEYISEAELLNKQIENQKNLIKNQ
                     ISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILKETAESAFLTTLEKAEDIE
                     LTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIANESMAYAKDLCLGVIKGT
                     RDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIALLKKEIQLQNDPCKSIVE
                     NLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKINDFNKLTQRKLNRFKQEIFE
                     LEKIASEKYKDLNSKKAKKLGVRLWEKAKKFVKK"
BASE COUNT          676 a          270 c          257 g          714 t
ORIGIN      
        1 tttacacttt taatgaaaat tttaaggaaa ataatgaaac tactttcatg gaatgtcaat
       61 ggcttaagag ctatttgtga taaaaatgca cttgattgga tagcacaaga aaaaattgat
      121 tttataggtt ttcaagaaat caaagcacat gaagataaat ttcctaaaaa aatttatgaa
      181 tatcctttta aacatatgta ttttaattct gctaaaagag cggggtattc tggtgtaatg
      241 agtctttgta attttgatag cgaagtaaaa aaatgtgaat tttttgatga tgaagaaggc
      301 agggttttag aacaccgctt taaaaatatc gcacttttta atatctattt tccaaatggt
      361 caaaaagatg aagagcgttt aaattttaaa atgaaatttt atgtagattt tttagtgtat
      421 ttggataagc ttttaaaaga tgggtttgaa attatcattt gcggtgatgt caataccgct
      481 cataaagaaa tcgatcttac ccacccaaaa gccaatgcca atacttcagg ttttttacct
      541 atagaaagag cttggattga tgatttgcta aaacttggtt ttatagatac ttttagagaa
      601 attaatggcg aaatcaaaga aaaatactcg tggtggagct atagaatgaa agcaagagaa
      661 agaaatgtag gctggaggat tgattatttt ttcatttcaa agggtttaaa agataaactt
      721 aaaaacgctt tcataagaga tgatattttt ggctctgatc acgcacctgt aggtatagaa
      781 atagatattt aatatcccaa aaatgggata ttatttttta acaaattttt ttgctttttc
      841 ccaaagtctt acaccgagct ttttagcttt tttagaattt aaatctttgt atttttcact
      901 agcaattttt tctaattcaa aaatttcttg tttaaaacga tttaattttc tttgagtaag
      961 tttattaaaa tcattaatct ttggattttt cttaatatca tttaaaacta atattagttg
     1021 ctctctgctt tcacctgcaa gacgtctaaa tttagcaaaa agattatcaa gttcatgttc
     1081 tagtaaattc tcaactatac tcttacaagg atcattttgt agttgaatct ctttttttaa
     1141 aagagcaata aaatcatctt ctatacctat tagttctttg ctttttaaac taacatcttc
     1201 ttcaaaattt gcataagtta atgaagcttt aaatttttcc attgccaaaa caataccatc
     1261 tcttgtgcct ttaatcacac ctaagcaaag atcttttgca taagccatag attcattggc
     1321 tatttcaaaa gcagtattta aaataatact tgaaattttt aaaattcttt ctttttcaaa
     1381 atgagcttca caaatggcat tatatacgag atttttagct atttcactac ttgtaagttc
     1441 tatatcttca gccttttcta atgtagttaa aaaagcactt tcagcggttt cttttaaaat
     1501 tccaagcatt tctatatcaa ataaaatagc atcatttaaa ccaccgctaa attcatcaca
     1561 aaaagaacat tcttgtaaaa tattctcgaa ttcaaaaaaa ttatcactga tttgattttt
     1621 aatcaaattt ttttgatttt caatctgttt gtttaataat tcagcttcgc taatatactc
     1681 ataaagcgaa ttttgagcat ctacaatact cgccttaacc aaagctttga taacctttgt
     1741 aacattttca tcatcaaaaa aatcaagttt tttcaaaata gttaaaaatt caaccaaaag
     1801 agaatttaaa actttttttg tttcatgagg attatgcgaa atttgcttat atgcaagatt
     1861 aaaactcaag tcttcaagta aatcacttgc ttcatcttta ctgagatttg ataaaga
//
LOCUS       DAEDTT010000149         1881 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.149, whole genome shotgun sequence.
ACCESSION   DAEDTT010000149 DAEDTT010000000
VERSION     DAEDTT010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1881
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.149"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..317
                     /locus_tag="KLC54_001637"
     CDS             <1..317
                     /locus_tag="KLC54_001637"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177996.1"
                     /translation="TIASSYLTYGSLIVAIATFLTAVIAIGLTIYYNRDKQRLIKETT
                     DVFLNKIIEDEKLRNDFINKILKNSEFMEEFERMVDLHINDKISILTDIDQEKSQIGG
                     LE"
     gene            314..865
                     /locus_tag="KLC54_001638"
     CDS             314..865
                     /locus_tag="KLC54_001638"
                     /inference="COORDINATES: protein motif:HMM:NF017885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HBD9177997.1"
                     /translation="MTYKEIKDKTPYEILDLLEMKEPPFNPFEIAQKLGINVVKDLDL
                     DKIDTEGQISVDEKGEPIIWINPLKNENRQRFTLAHELGHLANDILPSIENPIIDSYE
                     TLYRSNTYGGIETRANQFAARLLMPLRQIEDFIAECRKTTPDLKAAEAILLIASKFEV
                     SKQAVFHRLKNVGLIKQDYTYPF"
     gene            complement(862..1146)
                     /locus_tag="KLC54_001639"
     CDS             complement(862..1146)
                     /locus_tag="KLC54_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9177998.1"
                     /translation="MDRVSADIRQGVNKRFINAICNHNNELVLEYLKNCMSVTKECMG
                     KEPMFYAVTHNNFGAILLLLKYGAILDKEYLEESNKNFSKEALEFLASLL"
     gene            complement(1206..1835)
                     /locus_tag="KLC54_001640"
     CDS             complement(1206..1835)
                     /locus_tag="KLC54_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HBD9177999.1"
                     /translation="MQMQEVIEKLKDILASEGKCNLKTKDIAKELGIHPDTFNSMKFR
                     NSIPYPQILNFLNQRNISINYFFYGSSPKDQLECENKYKILKLYKTNASLGGGGINDL
                     IDSSDLIIDEKVLNFFGSKECEFITCYGESMEPIIKDGSICVIDRNKTFKNKSICVIN
                     TRDGLFIKQVLKQDDGVILHSLNPLYEDIFYKNGDFLLIGVVIGELSRL"
BASE COUNT          679 a          278 c          250 g          674 t
ORIGIN      
        1 ttactattgc aagttcttat ctaacttatg gaagtttaat tgttgctatt gctactttct
       61 taacagctgt tattgccata gggcttacta tatattataa ccgtgataaa caaagattaa
      121 taaaagaaac aactgatgta tttttaaata aaattataga agatgagaaa ttacgcaatg
      181 attttataaa taaaattcta aaaaatagtg aatttatgga agaatttgaa agaatggtcg
      241 atttacatat aaatgataaa atatctatat tgacagatat tgatcaagaa aaatcacaaa
      301 taggaggttt ggaatgactt ataaagaaat aaaagataaa accccttatg aaattttaga
      361 tttattggaa atgaaagaac caccatttaa tccgtttgaa attgctcaaa aattaggtat
      421 aaatgtagtt aaagatcttg accttgataa aattgacact gaaggtcaaa ttagcgtaga
      481 tgaaaaaggt gaacctatta tttggataaa tccgcttaaa aatgaaaata gacagcgttt
      541 tacattggca catgaattag ggcatttagc taatgatatt ttacctagca tagaaaatcc
      601 tattattgat agttatgaaa ccctttatag aagcaataca tatggtggaa tagaaactag
      661 agccaatcaa tttgcggcaa gactacttat gcctcttcga caaatagaag attttatagc
      721 agaatgcaga aaaacaacac ctgacttaaa ggcagcagaa gcaatattac ttattgcttc
      781 aaaattcgaa gtttcaaagc aagctgtttt tcacagactt aaaaatgtag gtctgataaa
      841 acaagattat acatatcctt tttagagcaa agaggctaaa aattctaaag cttctttgct
      901 aaaattttta ttgctttctt ctaggtactc tttatctaaa atagcaccgt attttaataa
      961 aagtaaaatc gctccaaaat tattatgagt tactgcataa aacataggct ctttacccat
     1021 gcattcttta gtaacactca tacaattttt aagatattct aaaacaagtt cattgttatg
     1081 attgcaaatt gcgtttataa atcttttgtt aacaccttgt cttatgtctg ctgatactct
     1141 atccatcttt atatcctttt gtattgatga gacaagatta gcttggctta gcttattgtg
     1201 tgctgtcata gtcttgaaag ttctccaatt accacaccaa ttagcaaaaa atctccattt
     1261 ttataaaata tatcttcata taaaggattt aaagagtgta aaatcactcc atcatcttgt
     1321 tttaaaactt gttttataaa aagtccatct ctagtattaa tcacacaaat gcttttattc
     1381 ttaaaagttt tatttctatc tattacacaa attgaaccat cttttattat tggttccata
     1441 ctctctccgt aacaagtaat aaactcacat tctttacttc caaaaaagtt taaaaccttt
     1501 tcgtcgatga ttaaatcaga gctatcaatc aaatcattta taccacctcc gcctaaactt
     1561 gcatttgttt tataaagctt taaaatttta tacttgtttt cacattctaa ttgatctttt
     1621 ggggaacttc catagaagaa ataattaatg cttatatttc tttgatttaa aaagtttagg
     1681 atttgtggat atggaatgga gtttctaaat ttcatggaat taaaagtatc aggatgaatt
     1741 cctagttctt tggctatatc ttttgttttt aaattacact taccttcact ggctaatata
     1801 tcttttaact tttcaatcac ttcttgcatt tgcatgttaa atcctttgat tttaatttca
     1861 aagaaattta acaaaaaatt a
//
LOCUS       DAEDTT010000150         1811 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.150, whole genome shotgun sequence.
ACCESSION   DAEDTT010000150 DAEDTT010000000
VERSION     DAEDTT010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.150"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..1138)
                     /locus_tag="KLC54_001641"
     CDS             complement(<1..1138)
                     /locus_tag="KLC54_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HBD9178000.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQE
                     KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLDEKHISLENLKKLRNTISSEGVSSK
                     DTHYILASAMIKSLRGSDIDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNA
                     LNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEA"
     gene            complement(1138..>1811)
                     /locus_tag="KLC54_001642"
     CDS             complement(1138..>1811)
                     /locus_tag="KLC54_001642"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178001.1"
                     /translation="IKNIKIHFDMINFSQFYTKFVLQNLNYEQFFNNPVQFYELNLFS
                     DSQQEINFDYLVLDNNKINSFYSKNQVNFNEENSTINLNIQGKSNEIDIDLKSLLGQN
                     LNFDKTKFNITINKFLNSNFNISHFIQKNLDLKIQNLILEKNKQNISLQGNLNINNSY
                     QAKLQVISSDEPDEIFPWTKDYGGLNQYFLKENNNFFLNLSYDSLANPQLKINGSEFS
                     NMDLN"
BASE COUNT          609 a          257 c          244 g          701 t
ORIGIN      
        1 ttgcttcttc tcctaagccc ttgctatgat aaaattttaa atttttacta agatattttt
       61 gctctaccca gccaccaaaa tcatgcggat aaagatagtt ttgtttttct tgatgattgt
      121 tgttaagata attaggtatt tctaaagctt cattattttt tacatagttt aaagcttcat
      181 tgatagcttt gtagcttgca ttagatttga ttgtgcttgc taaataaact acgcattggg
      241 ctaggataat tcttgcttca ggataaccta tatttttaac agcttctaga gtcgaaactg
      301 ctaaatttag agcatttgga tcggcatttc caacatcttc acttgaaaaa atcaccaaac
      361 gtctagcgat aaaatccgca ctttctcctg catcaataag tcttgcaaga taataaatag
      421 ctgcatcaat gtcacttccg cgtaaacttt ttatcattgc acttgctaaa atataatgtg
      481 tatcttttga actaacacct tcgctactta tggtgttgcg aagtttttta agattttcaa
      541 gactgatatg tttttcatct aaaaccaaga caaattcaag caaatttagc atagctcttg
      601 catcagcact tttaagtaga aaatctttag cttctttatc aatactaaat ttcatttttt
      661 cttgtacacg caagagtaaa gtttcaagtt cctttacccc taaagattta aattcaaaaa
      721 gcatggaacg acttcttatg ccagaactta aaacaaaata gggattttca gtacttgcac
      781 cgattaaaat taaacggtaa ttttccatag gaattaaaag catttcttgt tgggttttgc
      841 taaggcggtg aatttcatca ataaaaatta aaggcttata aagactattt ttataattgt
      901 ctaaaatttt tcttagttct tcgagtttaa aatttcctcc atcaaattca taaaaatcta
      961 agccaaattc ttttgctaca actctagcaa aagttgtttt tccagaacct gctgttccaa
     1021 aaaaaatgct atgaggaagt ttttgtaaag cagtaaattt tttgaaaatt tctataagct
     1081 catattgtcc taaaatatca tcaaaatttt cagggcgaaa ggtcaaagct aggctcatta
     1141 atttaaatcc atatttgaaa attcactacc attaattttt agctgaggat tggctaagct
     1201 atcataagat aaatttagaa aaaagttatt attttctttt aaaaaatatt gatttaaacc
     1261 tccataatcc tttgtccaag gaaaaatttc atcaggctca tctgaactga taacttgtaa
     1321 ttttgcttga taagagttgt taatatttaa attgccttgt agactgatgt tttgtttatt
     1381 tttttcaaga attaaatttt gtatttttag atcaagattt ttttgaataa aatgagagat
     1441 attgaaattt gagttaagaa atttatttat ggttatatta aattttgttt tgtcaaaatt
     1501 taaattctga cccaataaag atttaagatc aatatcaatt tcattggatt ttccttgtat
     1561 gtttaagttt attgttgaat tttcttcatt aaaatttact tggtttttgc tataaaaaga
     1621 attgatttta ttgttatcta gtacaagata atcaaagttg atctcttgtt ggctatcgct
     1681 aaataaattt aactcataaa attgtacagg attgttaaaa aattgttcgt aatttaaatt
     1741 ttgcaataca aatttagtat aaaattgaga aaaattaatc atatcaaaat gtattttaat
     1801 gtttttaatt t
//
LOCUS       DAEDTT010000151         1641 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.152, whole genome shotgun sequence.
ACCESSION   DAEDTT010000151 DAEDTT010000000
VERSION     DAEDTT010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1641
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.152"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            34..1149
                     /locus_tag="KLC54_001643"
     CDS             34..1149
                     /locus_tag="KLC54_001643"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HBD9178002.1"
                     /translation="MSEISLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSSVNLKYFDWTRL"
     gene            1146..>1641
                     /locus_tag="KLC54_001644"
     CDS             1146..>1641
                     /locus_tag="KLC54_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HBD9178003.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     VLLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANEC"
BASE COUNT          619 a          230 c          283 g          509 t
ORIGIN      
        1 aaaaccaaca atattaaaaa gaggaatgaa aaaatgagtg aaattagcct cattatgtta
       61 gcagctggaa attctactcg ttttaacaca aaggtaaaaa aacaattttt acgacttgga
      121 aatgaccctc tttggcttta tgcaacaaaa aatttaagct ctttttatcc ttttaaaaaa
      181 atagttgtta cctctagtaa tatcacttat atgaaaaaat ttactaaaaa ctatgaattc
      241 atagaaggtg gtgataccag agcagaatcc ttaaaaaaag ccttagagct catagatagc
      301 gaatttgtta tggtaagtga tgtagcaagg gtattggtga gtaaaaattt gtttgatcgt
      361 ttgattgaaa atttagataa agcagattgt attacccctg ctttaaaagt tgcagataca
      421 acactttttg acaatgaagc cttgcaaaga gaaaaaatca aactcattca aaccccgcaa
      481 atttctaaaa ccaaattgct taaaaaagcc ttggatcaaa acctagaatt tacagatgat
      541 agcacagcta tagctgcaat gggtggaaaa atttggtttg ttgaaggtga agaaaatgca
      601 agaaaactaa cctttaaaga agatcttaaa aagcttgatt tgcctacacc tagctttgaa
      661 atttttactg gcaatggttt tgatgtgcat gaatttggag agaatcgccc tttgctttta
      721 gcaggagtgc aaattcatcc tactatgggg cttaaagcac acagcgatgg agatgtttta
      781 gctcactctt taaccgatgc gattttaggt gctgcaggac ttggagatat aggagagctt
      841 tatcctgata ctgatatgaa atttaaaaat gccaactcca tggagctttt aaaacaggct
      901 tatgataaag tcagagaagt aggttttgaa ctcattaata tagacatttg cgtcatggca
      961 caaagcccta aacttaaaga ctttaaacaa gctatgcaaa gcaatatagc tcatacttta
     1021 gatttagatg aatttagaat caatgttaaa gccacaacaa cggaaaaatt gggttttatt
     1081 ggaagaaaag aaggtatggc ggtgcttagt agtgtaaatt taaaatattt tgattggaca
     1141 agattatgaa agttttaatt attgaaaatg aaatttatct agcacaaagc attagcatta
     1201 aactaagtga tgctggatat agctgtgaaa ttatcaactc gtttgatgaa tacaatggtg
     1261 aaaaatacta tgatattgta ctgctttcta caaatactaa taattttcta aaagccgtag
     1321 gtcagtttaa acatagtatt attattttgc ttatttctta tataagtaca gatacagttt
     1381 caaatccttt gaaattaggt gctagtgatt atattcaaaa accctttatg atagaagagc
     1441 tgattagaaa aataaagcat tatcaggatt ttagaaaact ttcaatcctt aataaagctt
     1501 atcaaagcta catcaaatca agattagaaa caatcaaaat tccagagtat aattataaaa
     1561 aattaaaact tccattgata ttaaaatcca acaagcaaag cagtgctgat gcttttgttt
     1621 ttaattatgc aaatgaatgt g
//
LOCUS       DAEDTT010000152         1621 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.153, whole genome shotgun sequence.
ACCESSION   DAEDTT010000152 DAEDTT010000000
VERSION     DAEDTT010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.153"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..749)
                     /locus_tag="KLC54_001645"
     CDS             complement(<1..749)
                     /locus_tag="KLC54_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HBD9178004.1"
                     /translation="MEKLKNFLSLKNIEDTQIYKELKCAKNEALILRELCRNYVVSIS
                     SINAFTLLSTIFGNDKYLYLDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALL
                     QSELSLSEYFLEFLEAKPRLNFEKQEAYADYLEYLKDEFVRIQLYERLSFIQKSAYNS
                     EIKNQIKLYEKHIKERLKKSKFYNVLADIFKEYNLEHKEQIIFLALLKEEYALSNESS
                     ISREMNSLLSLISENDLERHKNKKLLQENAPL"
     gene            complement(749..1573)
                     /locus_tag="KLC54_001646"
     CDS             complement(749..1573)
                     /locus_tag="KLC54_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178005.1"
                     /translation="MKFFLLVFCFVNLALAQVYKGELYFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIVDDINGNLEIPLVKTNDFWQDERKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFHPVHKGVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTENQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICVEFNEDELKEFKK"
BASE COUNT          584 a          245 c          166 g          626 t
ORIGIN      
        1 agaggagcat tttcttgtaa tagtttttta tttttatgcc tttctaaatc attttcactg
       61 attaaagaaa gtaaagaatt catttctcta gaaatcgaac tttcattact taaggcgtat
      121 tcttctttta aaagtgctag aaaaataatt tgttctttat gttcaagatt gtattcttta
      181 aaaatatcag ccaatacatt ataaaattta ctttttttta gtctttcttt gatatgtttt
      241 tcataaagtt taatttgatt ttttatttca ctattataag cacttttttg tataaaactt
      301 aatctttcgt ataattgaat acgcacaaat tcatctttta aatattctaa ataatctgca
      361 taagcctctt gtttctcaaa gtttaaacga ggttttgctt ctaaaaattc taaaaaatat
      421 tcacttagac taagctcact ttgcaataag gcaagagtta atgtttgagt tttattattt
      481 tctaaacttt taaaaaaact cgaattttga tttacaaaac ctctttcgat aagttttttt
      541 aaatcctcca aagcatcaag ataaagatac ttatcatttc caaaaattgt cgataataaa
      601 gtaaaggcat tgatagaaga aatagaaacg acataatttc tacaaagctc tctaagaatc
      661 aaagcttcat ttttagcaca cttaagctct ttataaattt gagtatcttc tatatttttc
      721 aaacttaaaa aattttttaa tttttccatt attttttaaa ttccttaagc tcatcttcat
      781 taaattctac gcaaatattt tcatctaaaa aatgaccttc aaaaggtaga taacaaattt
      841 ttagttttcc attattaagc aaaaaattat tattaaattg taaattttgc agatcttcaa
      901 aacactcatc acatgtattt ttaagcttct catgtaaaag attttgaaat ttttgatttt
      961 cagtattata caaatcattt agttttacaa atgcgtgagc attaatatca taaacaaaat
     1021 tatttaactc taaaatagca cgactcatac catcttcata aaaataatac cattcttcaa
     1081 aactaatttt tccatcttgt aaaaaaatag gtttttggcg aatttgctca aagctaaata
     1141 cacccttatg aacaggatga aattctttaa aatcatcatt aaaacctata aaatcaagac
     1201 tacgctttat acgaatgcca tcttgcgttt cgacaagttc taaagtagtt gttcctaaat
     1261 tttctccttg aaaattttta ttatcatacg taagcatttt agaagaattg attttatatt
     1321 ttttacgctc atcctgccaa aaatcatttg tcttaacgag cggaatctct aaatttccat
     1381 ttatatcatc aacaattaaa aaactagaac ttgtttgatt tttatccctg tcaaaaagtg
     1441 gggtcatagg tgcattatca taaactatgg caaaaatttc tttatcctgc aaatgataaa
     1501 aatacaattc acctttataa acttgcgcta aagctagatt tacaaagcaa aataccagta
     1561 aaaaaaattt caaactctat ccttcaattt tgaatatgcg ttaagataat tttagtatgt
     1621 g
//
LOCUS       DAEDTT010000153         1617 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.154, whole genome shotgun sequence.
ACCESSION   DAEDTT010000153 DAEDTT010000000
VERSION     DAEDTT010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.154"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>1617
                     /locus_tag="KLC54_001647"
     CDS             <1..>1617
                     /locus_tag="KLC54_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HBD9178006.1"
                     /translation="LEKISKNTEIFDFISQEKVQSIDQKALFQNDFKELNTINLELQK
                     LSFDENLKSRLQKTLEKFQNLEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETAN
                     LTVLSYGKSEEAKIYFWDKKEWQNILESSHFNADLKEFIDKLDKSVNIQDFIKDKPLI
                     QNIALCELKNFSSAKNKISALIKKIEIKSHLDFLKNNISIVDTPGLDDVVVQREIVTN
                     EYLRESDFLIHLMNASQSLTQKDADFLVHCLLNSRLSKFLIVLTKADLLSKKDLEEVI
                     VYTKESLKSRLVDLDENLVEKIDFLCVSAKMASDFYKSLAPKESLQKSGMQEFENYLF
                     NELYAGEKSKIALRAYKKELHLELKNILSEYEMQNRLIKENKQGVSEENQKLLLELQK
                     QNTLLKEAQDEISNSVAKLKNIDSGIDNLVLLLVKKLKERLIDEFKYLKNNAQKLNLS
                     RILNIVDITTKDGINDILREIKFENIKKIEELKTNLSLKYDFLKDDFDNGFEGFKDGI
                     SKNIDSIFQSEKFALLRLKIEKLSNLKSDLY"
BASE COUNT          670 a          163 c          258 g          526 t
ORIGIN      
        1 ttagaaaaaa tttcaaaaaa tactgaaata tttgatttta tttcacaaga aaaagttcaa
       61 agtatagatc aaaaagcttt atttcaaaat gattttaaag aattaaacac cattaattta
      121 gagcttcaaa agctaagttt tgatgaaaat ttaaaatcaa gacttcaaaa aactttggaa
      181 aaatttcaaa atttagagtt taatatagcc atcactggcg tgatgaatgc aggaaaatca
      241 agccttttaa atgctctttt aaaagaagat tttttaggcg tttcaaacat acctgaaaca
      301 gctaatttaa cagtattaag ctatggtaag agtgaagaag caaagatata tttttgggat
      361 aaaaaagaat ggcaaaatat acttgaaagt tcgcacttta atgcagattt aaaagaattt
      421 attgacaagc tggataagag tgtaaatata caggatttta tcaaagataa acctttaata
      481 caaaatatcg cactttgcga gcttaaaaat ttcagttcag ctaaaaataa aatttcagct
      541 ttaattaaaa aaatagaaat taaaagtcat ttagattttt taaaaaataa tatttccata
      601 gttgatactc cagggcttga tgatgttgta gttcaaagag aaattgttac aaatgagtat
      661 cttagagaaa gtgatttttt aattcattta atgaatgctt ctcaaagctt gactcaaaaa
      721 gatgcagact ttttggtgca ttgtctttta aattcaaggc tgagtaagtt tttaattgtt
      781 ttaactaaag cggatttgtt aagcaaaaag gatttagaag aagtcattgt ttataccaaa
      841 gaaagcttaa aatcaagact tgtggattta gatgaaaatt tggtggaaaa gattgatttt
      901 ttatgtgtga gtgctaaaat ggcaagtgat ttttataaga gtttagcgcc taaggaaagt
      961 ttgcaaaaaa gtggtatgca agaatttgaa aactatcttt ttaacgagct ttacgcagga
     1021 gaaaaaagta agattgcctt aagagcttac aaaaaagaat tgcatttaga gcttaaaaat
     1081 attctaagcg aatatgaaat gcaaaatcgt cttattaagg agaataaaca aggtgtaagt
     1141 gaagaaaatc aaaagctttt acttgaactt caaaagcaaa acaccttatt aaaagaagca
     1201 caagatgaaa tttcaaattc cgttgcaaaa cttaaaaata tagatagtgg catagataat
     1261 cttgttttac ttttggttaa aaaattaaaa gaacgcttga tagatgagtt taaatatttg
     1321 aaaaataatg cacaaaagct taatctttct cgtattttaa atatagttga tattaccacg
     1381 aaagatggga ttaatgatat tttaagagaa attaaatttg aaaatattaa aaaaatcgag
     1441 gagcttaaaa caaatttatc tttaaaatat gattttttaa aagatgattt tgacaatggt
     1501 tttgaaggtt ttaaagatgg aatttcaaaa aatatagata gtatttttca aagcgaaaaa
     1561 tttgcacttt taagattgaa aattgaaaaa ttaagcaatc taaaatcaga tttatat
//
LOCUS       DAEDTT010000154         1595 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.155, whole genome shotgun sequence.
ACCESSION   DAEDTT010000154 DAEDTT010000000
VERSION     DAEDTT010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.155"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            16..1545
                     /locus_tag="KLC54_001648"
     CDS             16..1545
                     /locus_tag="KLC54_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HBD9178007.1"
                     /translation="MTKQEIQKLDTNFLGHPKPLFSLSMVELWERFAFYGIRSLLVLF
                     MATTISKGGLGISTEYASAIYGIFAGCLYLAALPGGWITDNYLGQKKALFLGSFIIAL
                     GHISIALSILSTPIFFLGLTFIVIGTGFFKTSASVTVGMLYKQNDTRCDTGYTIFYIG
                     INIGAFIAPLICGFVQAKWNYHLGFSIGGLGMLISLLILYFKATPELEEFHKNCTLKQ
                     NWEQPFKKSKNLTLILSISLLSIIGFFLIFINLADINPIILSKKLLIVILLCLVIYFI
                     YLFVFKTLNKREKQQLTILIVLFFVATFFWSTFEQKPTAYNLFAQDFTNRNIFDWKIP
                     TNWFQSFNPIFIIILAPIASYIWIFLEKKNIYFSSIGKFTLGILFAGIGFMMMTFASQ
                     NLINNNGLPISMVWIIISIFFLTLGELCVSPVGLSIMAKVAPDLIKNQIMGLWFVASA
                     LGNFVAGLIGGNVNIKNIDQLPNIFGQCMWMLFVVALLLFIAKKPIYKILNEKNKQLS
                     N"
BASE COUNT          524 a          233 c          240 g          598 t
ORIGIN      
        1 gaaaggtatt gggaagtgac taaacaagaa atacaaaaac tcgatacaaa tttcctaggt
       61 catcccaagc ctttattctc tctatcaatg gtagaacttt gggaaagatt tgctttttat
      121 ggcatacgat ctttacttgt gcttttcatg gcaacaacca taagcaaagg tggacttgga
      181 ataagcactg aatacgcctc ggcaatttat ggcatttttg caggatgctt gtatttagca
      241 gcacttcctg gaggctggat tactgataat tatttagggc aaaaaaaggc tttatttcta
      301 ggttctttta ttatagcttt aggacatatt agcatagcct tatctatttt aagcacacct
      361 atatttttcc taggacttac ttttatcgtt attggtactg gattttttaa aactagcgct
      421 tctgtaacag ttggaatgtt gtataaacaa aatgatacaa gatgcgatac tggctatacg
      481 attttttata taggaattaa cattggagca ttcattgctc ctcttatatg tggttttgtt
      541 caagcaaaat ggaattatca tttaggattt agcataggag gtttaggtat gctaatctct
      601 ttgcttattt tatattttaa agctacccct gaacttgaag aatttcataa aaattgtact
      661 ttaaagcaaa actgggaaca accatttaaa aaaagtaaaa atttaactct tatactaagt
      721 ataagcttgt taagtattat tggatttttt ctaattttta ttaatcttgc agatattaat
      781 cccataatac tatcaaaaaa acttctaatt gtaattttac tatgtttggt aatttatttc
      841 atatatcttt ttgtttttaa aaccttaaat aaaagagaaa aacagcaatt aacaatttta
      901 attgttttat tctttgtagc cacttttttt tggagcactt ttgaacaaaa acctaccgct
      961 tataatcttt ttgcgcaaga ttttacaaat agaaatattt ttgattggaa aattccaaca
     1021 aactggtttc aatcttttaa tccaattttt atcatcatac ttgctcctat agcaagttat
     1081 atttggatat ttttagagaa aaaaaatata tatttttctt ccattggaaa atttacttta
     1141 ggaatattat ttgccggcat tggttttatg atgatgacct ttgcttcaca aaatctaata
     1201 aacaacaatg gtttgccaat atccatggtt tggattatca taagtatatt ctttttaaca
     1261 cttggggaat tatgcgtgtc tcctgttgga ctctctataa tggctaaggt tgcccctgat
     1321 ttaatcaaaa atcaaatcat gggactttgg tttgtagcaa gtgcacttgg aaattttgtt
     1381 gcaggactta taggaggaaa tgtcaatatt aaaaacatcg atcaacttcc taatattttt
     1441 ggacaatgca tgtggatgct ttttgttgta gcgcttttac tttttattgc taaaaaacca
     1501 atttataaaa ttcttaacga aaaaaataag caattatcta actaaactta aaatacaaaa
     1561 tacaccaaag ttgaaaattg atcttaatat ttctt
//
LOCUS       DAEDTT010000155         1583 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.156, whole genome shotgun sequence.
ACCESSION   DAEDTT010000155 DAEDTT010000000
VERSION     DAEDTT010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.156"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(47..>1583)
                     /locus_tag="KLC54_001649"
     CDS             complement(47..>1583)
                     /locus_tag="KLC54_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002828640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HBD9178008.1"
                     /translation="IIWTMFHILDFSNELQKNNLIIINTNILSEFDLLNFYKKANSIF
                     LQFSRIYFLELISNYYERYNEEILKLNDTILSTIKISIIQYGNDSIDNLMGIKHFIYN
                     LSKLLTHPHSEIFLKKRYKLSDTAIIVSTGPSLTKQLPLLKQYANKATIFCADSAYPI
                     LAKHNIKPDYVCMLERDDIVSKCFDNDFKEFDKGILFILASVVHKEVIEFLERNNREY
                     MLVHRPLHFAVSLNLKEFGYIGVGASVANMAYELAASLRHENIIFIGQDLAYAKDGSS
                     HPREHIYGNQGEKLRGEIYTLAYGGEKQVRTQLTWNLFRQAFEKDIFWAKEKLKINTY
                     NCTEGGARIEGAIEKPFQEVCETLLKENLKKPFDKPKILEKNKIKNKFLQTQKLLIKN
                     VKQSEEFIKKCQNELKKLDFELSKSQLNSQTLIKIKKNLLFFFNEFKRLKLFNELTQA
                     IYYHNECEIMYYEVLNDLEQDKKIEDFLTNQKKWWLQSFEYLNTQNQIIKETLKKYKN
                     DDI"
BASE COUNT          505 a          215 c          197 g          666 t
ORIGIN      
        1 tctttttgat ttaaattaaa tttcatattt ctctctctgc tttttatcaa atatcgtcat
       61 ttttgtattt ttttaaagtt tcttttatga tttgattttg agtatttaag tattcaaaac
      121 tttgtaacca ccattttttt tgattggtta aaaaatcttc aattttttta tcttgttcta
      181 aatcatttaa aacttcataa tacataattt cgcattcatt atgataatat atagcttgag
      241 tgagttcatt gaaaagtttt aaccttttaa attcgttaaa aaaaaataaa agattttttt
      301 taatttttat tagagtttgt gaattaagtt gagatttgct aagctcaaaa tcaagttttt
      361 ttagttcatt ttgacatttt tttataaatt cttcactttg tttgacattt ttaattaata
      421 gtttttgagt ttgtaaaaat ttatttttta tcttattttt ttccaaaatt ttaggcttat
      481 caaatggttt tttaagattt tccttaagta aggtttcgca tacttcttga aaaggttttt
      541 ctatagctcc ttctatccta gcacctcctt cggtgcaatt ataagtgttg atttttaatt
      601 tttcttttgc ccaaaaaata tctttttcaa atgcttgtcg gaataagttc caagtaagtt
      661 gagttcttac ttgtttttct cctccataag caagtgtata gatttcaccg cgtaattttt
      721 ccccttggtt tccatagata tgctctcttg gatgagaact tccatctttt gcataagcta
      781 agtcttgtcc tatgaaaatg atattttcat gtcttaagct tgcagctagt tcgtaagcca
      841 tattggcaac acttgctcct accccaatat aaccaaattc tttaagattt aatgatacgg
      901 caaagtgcaa aggacgatgc accaacatat actccctatt atttctttca agaaattcaa
      961 taacttcttt atgaactacc gaagctagga taaacaaaat tcctttatca aattctttaa
     1021 aatcgttgtc aaaacactta gaaactatat catctctttc taacatgcaa acataatcag
     1081 gcttaatatt gtgttttgct aaaataggat aagcgctatc tgcacaaaaa atcgtagctt
     1141 tatttgcgta ttgttttaat aaaggaagtt gtttagtaag acttggtcct gtagaaacaa
     1201 tgatggctgt atcgcttaat ttatatcttt ttttgagaaa aatttcacta tgtggatgag
     1261 taagtaattt tgaaagatta taaataaaat gttttattcc catcaaatta tctatagaat
     1321 cattgccgta ttgtatgata gatattttta ttgttgataa aatggtatca ttaagcttta
     1381 aaatttcttc gttatatctt tcataataat tgcttataag ttctaaaaaa taaattctag
     1441 aaaattgtaa aaaaatacta ttagcttttt tgtagaaatt taatagatca aattcgctta
     1501 aaatattggt attgataata attaaattgt ttttttgtaa ttcatttgaa aaatctaaga
     1561 tatgaaacat tgtccaaatg att
//
LOCUS       DAEDTT010000156         1576 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.157, whole genome shotgun sequence.
ACCESSION   DAEDTT010000156 DAEDTT010000000
VERSION     DAEDTT010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.157"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            15..779
                     /locus_tag="KLC54_001650"
     CDS             15..779
                     /locus_tag="KLC54_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HBD9178009.1"
                     /translation="MKVKWSRDFSIKNMQLDKQHELIFEITNLANDLALKIQENNTQY
                     KDDLKQILAKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSDNI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKTLHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTHDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     IFEDALQNHHFTTQKNDMGGGIDEFSSKNLRNFQSF"
     gene            736..>1576
                     /locus_tag="KLC54_001651"
     CDS             736..>1576
                     /locus_tag="KLC54_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HBD9178010.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCI"
BASE COUNT          663 a          216 c          210 g          487 t
ORIGIN      
        1 cgcaaggaaa aaatatgaaa gttaaatgga gtagagattt tagcattaaa aatatgcaat
       61 tggacaaaca acatgaacta atttttgaaa ttaccaatct tgcaaatgat ttagctctca
      121 aaattcaaga aaacaataca cagtataaag atgatctaaa acaaattctt gcaaaactat
      181 ttcaatacat caaaattcat tttaaagatg aagaaaaatt tatggaaagc attgattttc
      241 ctttgattga agaacataaa aaatctcatc aaatattagt agaaaaaact aaagagcttt
      301 tagagcattc agataatatt gtaaaaatgt ctcaagaact ttccatatta accaaagatt
      361 ggattttaga tcattttgct aatgaagatt tatggatagc taattttaca aaaaaaaccc
      421 tacaccttca agaaatccat tataccttgg aacaatacat aaaactaaaa tcaatcaaac
      481 aagacctaag agctgaaaaa actcatgatt atatttgcaa ttgttctttg cgtatccatg
      541 cagttccaca gactatacat caagagcttg ttagcaaaga aaatacctta aagtgcgaaa
      601 aatgtgggca aattttagtt catttggatt attttgattt gaatcaaaat ttcgaaaaat
      661 tcaatgctat ttttgaagat gcactacaaa atcaccattt cacgactcaa aaaaatgata
      721 tggggggggg gatagatgaa ttttcaagta aaaaccttag aaactttcaa tccttttgaa
      781 agtttaaatc atgaacaagc aaacacagaa caaattcttg attttagagt tatagatttt
      841 aaacttctgt gttctagtgt aaaaccagca aaaacaaaaa cttatgaaag aaaggatttt
      901 gacttatttt atgcagatga tttttttgta aaaaactaca ataccatagt gcaaaaattt
      961 cttatagaaa tttacccaaa aacccaaagt tttcctttta cagtcaaact tagatccaac
     1021 tccaacctaa cccatctaaa agccagtatc aaccttacag aaaattttaa atattatcct
     1081 aatttaaaat ttgatatttt acaaaatatc tacaaaataa tgatcaaaca aaaattttta
     1141 atcttaagac ttgataaaaa tttatttgac aagattgatg attttatctt atcaatacaa
     1201 aaaagtccat ctattaaaga aatagagctt gaaattgcca aaggtgtaga taagattgaa
     1261 cataaaagtg atgaaattat ttatcataga gatgttaacg aagaatgttt tgacgaaaat
     1321 attaactatg atgaaggaaa ctactgtaaa cctattgaaa aaaatgagct actttttgaa
     1381 tacatttata gaattcttgg aaaagaagga cgaaatttaa gaggagagat acttcattta
     1441 aatccaatag cctttcttga taatcctttt atcataaaag atgaaagcat ttacacagaa
     1501 gaattagaag atagaattaa atattttagc gccaattatg gatttttaaa caaagatcat
     1561 acaggatatt gtatcg
//
LOCUS       DAEDTT010000157         1497 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.158, whole genome shotgun sequence.
ACCESSION   DAEDTT010000157 DAEDTT010000000
VERSION     DAEDTT010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1497)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1497)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1497
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.158"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(15..182)
                     /locus_tag="KLC54_001652"
     CDS             complement(15..182)
                     /locus_tag="KLC54_001652"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178011.1"
                     /translation="MKLYIILTFLKDDESIDIYYPPNFYEDTSIFNIVEHSFFNSREY
                     YKNYKLLIVLI"
     gene            complement(416..721)
                     /locus_tag="KLC54_001653"
     CDS             complement(416..721)
                     /locus_tag="KLC54_001653"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178012.1"
                     /translation="MQKIDENFKKEKEQNKDLELNKFQITSREIFTIKTPENKDVEVE
                     LTCTAGLIQTSQINYEEIVRKEFLYKCFPVTWNDFLKLNKYEKNWHIQLKIVMILDC"
     gene            complement(895..1338)
                     /locus_tag="KLC54_001654"
     CDS             complement(895..1338)
                     /locus_tag="KLC54_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HBD9178013.1"
                     /translation="MIFFNNLQRDANFYSIPKLNVSASTSGDNELIGLEGYETGEMLE
                     LSKAFFKTTPKNMKAIKVDGYSMVPMLLPDSWVVFEETHKYQGDGLYILNFDNQLMVK
                     LLQLDPISKVLDIISVNKDYKSYSLDLKDSQVELIIQGKVLRFII"
     gene            1322..1489
                     /locus_tag="KLC54_001655"
                     /pseudo
     CDS             1322..1489
                     /locus_tag="KLC54_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297138.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
BASE COUNT          509 a          229 c          174 g          585 t
ORIGIN      
        1 atcagagtgt ggctttaaat caaaacgatt aaaagtttgt aatttttata atattcccta
       61 ctgttaaaaa aactatgttc tactatatta aaaattgatg tatcttcata aaaatttggc
      121 ggataatata tatctatact ttcatcatct tttaaaaaag taagtattat ataaagcttc
      181 attcaactca tcacccctat gcattgtttg cataggaaaa tagcttcctt ctggtatttc
      241 attaaaaaga agtcgatata gtagcgataa gcttttaaac ttaatttgct ttttatttga
      301 acggggtccg aaaattcgtg caaatatctc ttcctagatc gtatatcttt tttaaaatat
      361 tcaggaagtt cactttgtca ttttaaatat ttgaatattt gctcataaac ctcttttaac
      421 aatccaatat catcacaatc tttaactgta tatgccaatt tttttcatac ttgttaagct
      481 ttaaaaaatc attccaagtt actggaaaac atttgtataa aaattctttt ctaacaatct
      541 cttcataatt aatttggcta gtttgaatta atccagctgt acaagttaat tcaacctcaa
      601 catctttatt ctctggagtt tttatggtaa aaatttcgcg tgaggttatt tgaaatttat
      661 taagttccaa gtccttattt tgctcttttt cttttttaaa attttcatca attttctgca
      721 ttttttacct atgctcttcg ttgatttttt gcatttcctg cttatattca ttccaaattt
      781 cttttagcgg cttatttggt gttcctttta tttttctata taaataatta cataaaagaa
      841 aataaagata cttattaata ttagcaacac aatattcact ttaattcctt taaattatat
      901 aataaaacgc aaaactttgc cttgtataat cagctcaact tgcgagtctt ttaagtccaa
      961 actatagctt ttataatcct tatttacact aataatatct aaaactttac ttattggatc
     1021 taattgcaaa agtttaacca ttaattggtt atcaaaattt aaaatataca atccatctcc
     1081 ttgatactta tgcgtttctt caaaaacaac ccagctatca ggtaaaagca ttggaaccat
     1141 agaataacca tcaactttaa tagctttcat atttttaggc gttgttttaa aaaaggcttt
     1201 actaagctca agcatttcac ctgtttcata tccttcgagc ccaattaact cattgtcacc
     1261 actggtagaa gccgaaacat taagttttgg tattgaataa aaattagcat ctcgctgcaa
     1321 gttgttaaaa aatatcaagg gtaaatttat gctttcttat aatgattgtg agcttataag
     1381 agagctttat aaagatttta atattaagga attaaaagta aggtattctt taaataataa
     1441 tgttttaaaa agaaaagaaa gtaaagagct tttgattatg aatttttagc aagctaa
//
LOCUS       DAEDTT010000158         1456 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.159, whole genome shotgun sequence.
ACCESSION   DAEDTT010000158 DAEDTT010000000
VERSION     DAEDTT010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1456
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.159"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(139..1434)
                     /locus_tag="KLC54_001656"
     CDS             complement(139..1434)
                     /locus_tag="KLC54_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HBD9178014.1"
                     /translation="MRKSKFGTKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREHCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLRDLFKEKDIVKNLFSSMMMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGAFMGYLVDKFGLFKICIFFSLTFVFFSFLYFYALYELKNLV
                     LVCILYSIVCFLGGINVFAPILMSEVFRAKIRFSGISFSYNIAYAISGGITPQLVFWL
                     NTLASKNENPFLYGMSIYMIFLALLAICAVFIVKDKIKF"
BASE COUNT          637 a          261 c          140 g          418 t
ORIGIN      
        1 actccaacag cacttgtaat aaaagaaaaa agcaaaaaag aaatcaactt taatttattt
       61 tgcttaagta attcgataat aaaaggcatt tataaactcc aaaatataat tttaattata
      121 acattttaag agtgattatc aaaattttat tttatctttt actataaaaa cagcacaaat
      181 agccaataac gctaaaaaaa tcatatatat actcatacca tataaaaatg gattttcatt
      241 tttactcgcc agtgtattaa gccaaaaaac gagttgcgga gtaataccgc ctgaaattgc
      301 ataagcaata ttataagaaa aagaaattcc tgaaaatctt attttagctc taaaaacttc
      361 actcattaaa ataggcgcaa acacattaat cccacctaaa aaacaaacaa tcgaatacaa
      421 aatacacacc aaaaccaaat ttttaagctc atataaagca taaaaatata aaaaagaaaa
      481 aaatacaaaa gttaaagaaa agaaaatgca aattttaaat aaaccaaatt tatctacaag
      541 ataacccata aaagccccgc ctaaagctat tcccaaaatt cctaatatct gtaaataact
      601 tccttcaacc ccacttaaat ttaaaatact aggcataaat ttaggcatca ataaaacaag
      661 cacaataaca caacctgtta aaacccaagt catcatcatt gatgaaaata aattttttac
      721 aatatccttt tctttaaata aatctctaag tggaaaagaa ctaagtgatg attctttttt
      781 catttgttta aaaacaggag tttcttgcaa aaatctacgc aaataaatag aaataatccc
      841 aaaaattcca cctacaaaaa aagcaatacg ccatgcataa gcagcaattt cttctatact
      901 aaaaaaagca ttaatgatta aaaatactat acttcctaac aaaattccta aagccatagc
      961 tgaatttaaa cagcttaaaa agaaagcttt ttgtttttct tgacaatgtt ctcttacaaa
     1021 aacccaagct ccaggcaatt ctccacctat agctatgcct tgaaaaattc ttataagtat
     1081 caataaaaca ggagctaaaa acccaagagt ttcataacct ggaataaaag ctaagacaaa
     1141 ggtaggaaga accattagta aaatacttag cataaacata tttttacgcc caaatttatc
     1201 tccaaaatgt gccataacta taccacctaa aggacgtgct aaatatccag ctgcaaatgc
     1261 tccataagta tttaataaag cccaaaattc actcatatct ttaggaaaaa atacattagc
     1321 tatatattca gcaaaaaaga caaaaataat aaaatcataa aattctaaag ttcctcctag
     1381 tgaagaaagt cctaagatct taatttcctt tgttccaaat tttgattttc tcattgatta
     1441 attaccttaa atttta
//
LOCUS       DAEDTT010000159         1374 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.160, whole genome shotgun sequence.
ACCESSION   DAEDTT010000159 DAEDTT010000000
VERSION     DAEDTT010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1374
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.160"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..994
                     /locus_tag="KLC54_001657"
     CDS             <1..994
                     /locus_tag="KLC54_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HBD9178015.1"
                     /translation="ILGKQCEKFENNFAKYCGVKHCIGVANGLDALRLIIKAYNFKEN
                     DEIIVPANTYIASILAITDNKCKPILIEPDINTYNINPDLIEEKITKKTKAIMVVHLY
                     GQVCDMEKIQLLANKYNLKIIEDCAQAHGAIYKDKRVGNLGDAAGFSFYPGKNLGALG
                     DAGCICTNDDNFASKIRALANYGSHKKYENLYIGLNSRLDEIQAAFLDIKLKYLDEDN
                     NKRKNIANFYLQNIKNENIILPSNKFDHVWHLFVVKTKLRDELQHYLNNHDIQTIIHY
                     PIPPHKQKCYKDLNHLQLPVTENIHQEVLSLPISPTMKENDFKKVADILNKWKV"
     gene            complement(1026..>1374)
                     /locus_tag="KLC54_001658"
     CDS             complement(1026..>1374)
                     /locus_tag="KLC54_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HBD9178016.1"
                     /translation="LIDIKKELVNTKSKLFDKISINIENKNWTIIKDDKALINDLREY
                     FEKFMIILEKKANERLENMVKEEDVLNYLKEHQDLGKKIKNILDYELQHIKEHRPDII
                     NSWEYYKKFLEIF"
BASE COUNT          520 a          190 c          172 g          492 t
ORIGIN      
        1 tatacttgga aagcaatgtg aaaaatttga aaataatttt gcaaaatatt gtggggttaa
       61 acattgcata ggcgttgcaa atgggcttga tgctttaaga ttgatcataa aagcttataa
      121 ctttaaagaa aatgacgaaa tcatagttcc cgcaaataca tacatagcat caattttagc
      181 tataactgat aataaatgca aacctatact gatagagcct gatatcaata cttacaacat
      241 aaatcctgat ttaatagaag aaaagatcac aaaaaaaact aaagctatca tggttgttca
      301 tctttatggt caagtttgtg atatggaaaa aattcagttg ttagctaata aatacaattt
      361 aaaaattata gaagattgtg ctcaagcaca tggtgctatt tataaagata aacgagttgg
      421 aaatttggga gatgccgccg gtttttcttt ttaccctggt aaaaatttag gtgctttagg
      481 ggatgctggg tgtatttgca ccaatgatga taattttgca tccaaaatta gagctttagc
      541 aaactatggc tctcataaaa aatatgaaaa tttatatata ggattaaatt ctagattaga
      601 tgagatacaa gctgcttttt tggatataaa attaaaatat ttagatgaag acaataataa
      661 aagaaaaaat atagcaaatt tttatctaca aaatataaaa aatgaaaata ttatattacc
      721 tagtaataaa tttgatcatg tttggcatct atttgtagtc aaaacaaagc ttagagatga
      781 attacaacac tatctaaata atcatgatat tcaaactatt atacactatc ctatccctcc
      841 tcataagcaa aaatgctata aagatttaaa tcatttacaa ctacccgtaa cagaaaacat
      901 ccatcaagaa gttttgtcat tacctatatc gccaaccatg aaagaaaatg attttaaaaa
      961 agtggctgat atattaaaca aatggaaagt ctgatagatc gctctccatt ttattcgctt
     1021 attctttaaa aaatttcaag aaatttttta tagtattccc aactattaat aatatctggt
     1081 ctatgctctt ttatatgttg caattcataa tccaaaatat ttttaatttt ttttcctaaa
     1141 tcttgatgct cctttaaata atttaaaaca tcttcttctt ttaccatatt ttcaagtctt
     1201 tcattcgctt ttttctctaa aataatcata aatttttcaa aatattctct aagatcattg
     1261 attaaagctt tatcatcttt aataatggtc caatttttat tttctatatt aatcgaaatt
     1321 ttatcaaata acttgctttt tgtatttaca agttcttttt ttatatcaat taaa
//
LOCUS       DAEDTT010000160         1339 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.161, whole genome shotgun sequence.
ACCESSION   DAEDTT010000160 DAEDTT010000000
VERSION     DAEDTT010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1339)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1339)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1339
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.161"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..192)
                     /locus_tag="KLC54_001659"
     CDS             complement(<1..192)
                     /locus_tag="KLC54_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178017.1"
                     /translation="MKKCILFFFSLYSLSFANIYEKLNDFAYEKKPNKDFKIQEVKLV
                     QFSQENKDCLELLIEAGQVR"
     gene            complement(189..431)
                     /locus_tag="KLC54_001660"
     CDS             complement(189..431)
                     /locus_tag="KLC54_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178018.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKREKLENAIEA
                     YIDNIDNVLENSNKEGVDEILEVVEFLKNKYKDFFQ"
     gene            complement(415..>1339)
                     /locus_tag="KLC54_001661"
     CDS             complement(415..>1339)
                     /locus_tag="KLC54_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HBD9178019.1"
                     /translation="FNSIIGDIEKDENFGKAIILITDLNLNLNQCEEFEKICKEKNIK
                     IFLLDHHQSGEECAQKYSWYLLDSKRCATKIVYDFFSKICTPVLELSKFVDVVNAVDI
                     WLSEDENFELGKVFLGLIANAKEINRVMFKESQIDYMFFLLDKAWKFIGKENANILLD
                     NATHFIKKDYFARKNDDTLSNLISYFVVEKLSELKENFSIEYEGHKGILTSNIGNTSV
                     IGNDFLVKNPDYDFFIDVSSRKTLSFRANGKIDVSLMAKNLVGGGGHKNASGGLFATF
                     KDGANYNYIKAQIIDLIKSKELKKENNESKQ"
BASE COUNT          466 a          219 c          130 g          524 t
ORIGIN      
        1 tctaacttga ccagcttcta ttaaaagttc aaggcaatct ttattttctt gtgaaaattg
       61 cactaattta acttcttgaa tcttaaaatc tttatttggt tttttttcat aagcaaaatc
      121 atttaatttt tcataaatat tggcaaaact taaagaatat aaactaaaaa aaaataaaat
      181 acactttttc attgaaaaaa atctttgtat ttatttttta gaaattccac aacttctaaa
      241 atttcatcaa ccccttcttt gttggaattt tcgagcacat tatctatatt atcaatataa
      301 gcttctattg cattttctaa tttttctctt ttaactccag cgtataaaag catagcttct
      361 aaaactatgc taagctcata ttgtaaatct tctagttcat tttttaaggt tttattattg
      421 ttttgattca ttgttttcct ttttaagttc tttgctttta attaaatcaa taatttgagc
      481 cttaatataa ttataatttg ccccatcttt aaatgtcgca aaaagtccac cactagcatt
      541 tttatgtcca ccgccaccta ctaaattttt agccattaaa cttacatcta tttttccatt
      601 tgcacgaaaa cttaaggttt ttctagaact aacatcaata aaaaagtcat aatcaggatt
      661 ttttactaaa aaatcatttc caataacaga agtattgcct atatttgaag ttaagatgcc
      721 tttatggcct tcatattcta tactgaaatt ttcttttagc tcacttagtt tttcaactac
      781 aaaataagaa attaaattag aaagagtatc atcatttttt ctggcaaaat aatccttttt
      841 tataaaatga gtagcattat cgagtaaaat atttgcattt tcttttccta taaatttcca
      901 agccttatca agcaagaaaa acatataatc gatttgagat tctttaaaca tcacacgatt
      961 tatttctttt gcattggcaa tcaagcctaa aaaaaccttt ccaagttcaa aattttcatc
     1021 ctcgcttagc caaatatcaa cagcattaac cacatcaaca aattttgaaa gctctaaaac
     1081 aggggtgcag attttagaga aaaaatcata aacgatttta gttgcacatc ttttagaatc
     1141 aagtaaatac caagaatatt tttgagcaca ttcttcgcca ctttgatgat gatcaagaag
     1201 aaaaatttta atatttttct ctttgcaaat tttttcaaat tcttcacatt gatttaaatt
     1261 taaatttaaa tctgttatta gaataatagc ttttccgaaa ttttcatctt tttctatatc
     1321 gcctataata gagttaaaa
//
LOCUS       DAEDTT010000161         1331 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.162, whole genome shotgun sequence.
ACCESSION   DAEDTT010000161 DAEDTT010000000
VERSION     DAEDTT010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1331
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.162"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            197..1243
                     /locus_tag="KLC54_001662"
     CDS             197..1243
                     /locus_tag="KLC54_001662"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HBD9178020.1"
                     /translation="MKKLLLCVLVFLSIGACMAEAKPKIAILATGGTIAGSIDSAVAT
                     TGYTAGVVGVDVLIKAVPQIQDLANISGEQIANIDSSNMRDEIWLKLAKEINKLFAEG
                     VDGVVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAIGADGPKNLYNAVALAA
                     DKESKGKGVMVAMNDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVIK
                     AHTKNAPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGAKGIVVAGSGAGSIHED
                     QKNVLKELMKKGLNVVVSSRVVAGRVAVSDSDEKLGFISAEDLNPQKARVLLMLALTK
                     TSDPKKIQEYFLKY"
BASE COUNT          453 a          158 c          267 g          453 t
ORIGIN      
        1 tttgataaag agccagaatt gaatcaaaat atttctttgc ttggaagtat ttctaagaat
       61 gaatttagag gattagtaac tccacaattt gttattaaag aaattttata aaatttataa
      121 aatttttatt tattatttat taatattata taagtttcat taatgaaacg aattttaaca
      181 aaataagggg agaattgtga aaaagttact attgtgtgta ttagtatttt tatctatagg
      241 agcatgtatg gcagaagcta aaccaaagat tgctatttta gcaacaggtg gaacgatagc
      301 aggttctatt gatagtgctg ttgccacaac aggttatacg gctggagttg ttggcgtaga
      361 tgttttaatc aaagcggttc cacaaattca agatttagct aatattagtg gggaacaaat
      421 agcaaatatc gatagttcaa atatgcgtga tgaaatttgg ctaaagctcg ctaaagaaat
      481 caataagctt tttgccgaag gggtggatgg tgtggttata actcatggta ctgacaccat
      541 ggaagaaact gcttattttt taaatttaac cattaaaagt gataagcctg tagttttagt
      601 tggcgctatg cgtccatcaa ctgctatagg tgcagatgga ccaaaaaatc tttacaatgc
      661 tgtagcatta gctgctgata aagagtctaa gggcaagggt gttatggtag ctatgaatga
      721 taaaatttta agtgctagag gtgtggtaaa aacccatagt ttaaatgttg atgctttctc
      781 ttctcctgat tttggggatt tgggttatat agtagatggt aaagtctttt tctataataa
      841 tgttattaaa gctcatacaa aaaacgctcc ttttgatgta agcaaactca caagtttgcc
      901 aaaagtagat attctttata gctattcaaa tgatggtagt ggtgtcgctg caaaagcttt
      961 atttgaacat ggagctaagg gcatagttgt tgcaggaagt ggtgcaggaa gtatacatga
     1021 agatcaaaaa aatgttttaa aagagcttat gaaaaaagga cttaatgttg ttgtaagttc
     1081 aagggttgta gcaggtcgtg ttgctgtgag tgattcagat gaaaaattag gttttattag
     1141 tgctgaagat ttgaatcctc aaaaagcaag agttttactt atgttagcgc ttacaaaaac
     1201 aagtgatcct aaaaaaattc aagagtattt tttaaaatat taaatttttt aaatatttct
     1261 aaacttaggg aaattatctt ccctaagtca agccttttaa tcctaataat agtatattat
     1321 atcttgcatt t
//
LOCUS       DAEDTT010000162         1243 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.163, whole genome shotgun sequence.
ACCESSION   DAEDTT010000162 DAEDTT010000000
VERSION     DAEDTT010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1243
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.163"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..313)
                     /locus_tag="KLC54_001663"
     CDS             complement(<1..313)
                     /locus_tag="KLC54_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HBD9178021.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFVSFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GR"
     gene            complement(307..>1243)
                     /gene="galE"
                     /locus_tag="KLC54_001664"
     CDS             complement(307..>1243)
                     /gene="galE"
                     /locus_tag="KLC54_001664"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HBD9178022.1"
                     /translation="RQFLKTDHEICVLDNLSKGSKIAIEDLQKIRAFKFFEQDLSDFQ
                     GVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNTTNLIETCLQTGVNKFIF
                     SSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDASMANPEFKHCILRYFNV
                     AGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDYDTKDGTCIRDFIHVDDI
                     SSAHLSALDYLKENESNVFNVGYGHGFSVKEVIEAMKKVSGVDFKVELAPRRAGDPSV
                     LISDASKIRNLTSWQPKYDDLGLICKSAFDWEKQC"
BASE COUNT          453 a          237 c          161 g          392 t
ORIGIN      
        1 aacgtccttt agaaaatctt gccaaaagat gaaaataata cgcatttaac aaagctctaa
       61 atacataaaa aacaataagc cccactccaa aataaacaat gatttcaaaa acagggatat
      121 taagatattc ttttaggctg attaaatatt tattacgatc aaaataagaa aaatcactag
      181 ccaaagtgat aaaaggcatt accaaagaaa tcgcaaaagt ttctataaaa gaaacaaata
      241 ctgaaaaaac aagcaagaaa aataaaaaat ttttatcttc cttgcttaaa ataaaaaaaa
      301 gtttttttag cactgttttt cccaatcaaa agcagattta caaataagcc ctaaatcatc
      361 atatttaggc tgccaagaag taagatttct gattttactt gcatcagaaa tcaatacact
      421 aggatcaccc gcacggcgtg gggcaagttc tactttaaaa tccactccgc taactttttt
      481 catcgcttca atcacttctt ttacgctaaa accatgtcca taacctacat taaaaacatt
      541 gctttcattc tcttttaaat aatccaaagc cgataaatgc gcacttgaaa tatcatccac
      601 atggataaaa tctcttatgc aagtgccatc ttttgtatca taatcatcgc caaatatgaa
      661 aagtttatca cgttttcctg cggcacattc agctgcaact tttatgagta atgttgcttt
      721 tggatagcgt tgtcctaaag tataatccat acaagcacct gcaacattaa aatatcttaa
      781 aatacaatgc ttaaattcag gatttgccat actcgcatca cgcaaaacct cttcactcat
      841 aagcttacta cgcccataag gattaatagg tgctaaaggg cttgtttcgc tcacaacagg
      901 agtttgtggt tcgccataag tggctgccgt tgaagaaaat ataaatttat ttactccagt
      961 ttgcaaacaa gtttcgatga gatttgtcgt attaacagtg ttgttcatat aatattttaa
     1021 aggattttgc atactttcaa aaacttcaat gcttgctgca aaatgcacaa tagcgtcaaa
     1081 tttttctctc tcaaacaatg cttttacgcc ttgaaaatca cttaaatctt gttcgaaaaa
     1141 tttaaaagct cttatttttt gcaaatcttc tattgcgatt ttagaaccct tagaaagatt
     1201 atctaaaaca caaatttcat gatctgtttt taaaaattgt ctt
//
LOCUS       DAEDTT010000163         1228 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.164, whole genome shotgun sequence.
ACCESSION   DAEDTT010000163 DAEDTT010000000
VERSION     DAEDTT010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1228)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1228)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1228
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.164"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..609
                     /locus_tag="KLC54_001665"
     CDS             <1..609
                     /locus_tag="KLC54_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178023.1"
                     /translation="NKSNEKNMDFINTLKPDENGEVKLSFEDLKLKFKQLGEKITSLN
                     NQIEFTQSLEEREAWSVLKELDKMDENFNKYKVNYSLALFSIVNYRFIMEKYGMGSLN
                     EIFVRFKKILKDSCSEFDELWMIDEKSYLIVSPGKSKDEITQLVNTNLKTIENFRFIY
                     KQDIITPKIHVAYLDKQSKPSINILDELIKQIAAVNEQHNES"
     gene            575..>1228
                     /locus_tag="KLC54_001666"
     CDS             575..>1228
                     /locus_tag="KLC54_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HBD9178024.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSVFERRMNI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPVALISDEQEQNVLNLAKKIAFLKKANLQV
                     "
BASE COUNT          487 a          122 c          209 g          410 t
ORIGIN      
        1 aataaatcga atgaaaaaaa tatggatttt atcaatactt taaaaccaga tgaaaatggg
       61 gaagtaaaac ttagttttga ggatttaaaa ctaaaattta aacaacttgg agaaaaaatt
      121 acatctttaa ataatcaaat tgaattcacg caaagcttgg aggagagaga ggcttggagt
      181 gttcttaaag agcttgataa aatggatgaa aattttaata agtataaagt taattattct
      241 ttagctttat tttctatagt aaattaccgt ttcattatgg aaaaatacgg catgggaagt
      301 ttgaatgaaa tttttgttcg atttaaaaaa attttaaaag attcttgtag cgaatttgat
      361 gaactgtgga tgatagatga aaagagttat ttgattgttt cgccaggaaa aagcaaagat
      421 gaaattacac agcttgtaaa tacaaatctt aaaactatag aaaattttag atttatttat
      481 aagcaagata ttataactcc taaaattcac gtggcttatc ttgataagca aagtaagcca
      541 agtattaata ttttagatga gttaataaag caaattgcag cggttaatga acaacataat
      601 gaaagttgag aattttttag ctcaaaaaag tataaattac gataaaattg atcgtttttt
      661 gatgtttaga atgtatgaaa aatataagaa atattttaaa aatattccta taattcaact
      721 tataggcaca aatggtaaag gtagcacggg tagatattta acccaacttt tagaaaattt
      781 aaattataaa atagggcatt atactagccc gcacattttc agttttaatg aaagatttta
      841 tcttgatggt aagattgcga atgatgaaga attagaacaa gctcatataa gacttgaaga
      901 aatttttaaa caagacttgc aaaaattaag ttatttcgaa tatgctactt ttttagctat
      961 gattttattt caaaaatgcg atttcattgt tttagaagca ggagtgggtg gagaatatga
     1021 tgctacttct gtttttgaaa gaagaatgaa tatttttaca agaattggat ttgaccatat
     1081 tcaaattttg ggcaattctt tagaagatat tgcaagaacc aagcttaaag ttatggcgcc
     1141 tgtagcactt ataagtgatg agcaagagca aaatgtttta aatttagcaa aaaaaattgc
     1201 ttttttaaaa aaagctaatt tgcaagtt
//
LOCUS       DAEDTT010000164         1139 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.165, whole genome shotgun sequence.
ACCESSION   DAEDTT010000164 DAEDTT010000000
VERSION     DAEDTT010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1139)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1139)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.165"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..102
                     /locus_tag="KLC54_001667"
     CDS             <1..102
                     /locus_tag="KLC54_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD9178025.1"
                     /translation="IISKNGFSKEFDKICEQNLLLLDLNDFKILLEE"
     gene            106..1125
                     /gene="flgS"
                     /locus_tag="KLC54_001668"
     CDS             106..1125
                     /gene="flgS"
                     /locus_tag="KLC54_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HBD9178026.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSAIDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASCDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
BASE COUNT          418 a          132 c          207 g          382 t
ORIGIN      
        1 ataatctcaa aaaatggttt tagcaaggaa tttgataaaa tatgtgaaca gaatttgctt
       61 ttacttgatt tgaatgattt taagatttta ttagaggaat gataaatgaa tgaaagtatt
      121 ttaaaaagtt tagactcaaa tgaaaaagaa accctacaaa aaggcttaga aagtcttata
      181 gaacaaactt atgtaataga aaatgaatac aaaactttaa atgaaaacta taattcctta
      241 cgcgcaatgg ttgatgagat tatagaggtg ttgcctagtg cactttggat tttagataaa
      301 gaaaaaaata ttattttaca aaatcaagaa gccttgaaaa atccaaaatt acttagtatc
      361 attagtctgg ataaaattcg tgatgagctt gaatttgaag gtaggtttta tgcggtaaaa
      421 atcatagcac ataatgaaaa aactatagtt tcagctatag atattagcga tgaaaaacgc
      481 aatgaaaggc ttgcaagtat gggtagtgta gcggctcatt tggcacatga gataagaaat
      541 cctattggat ctatatcttt acttgcttca actctttttg ctcgtagtga gcttaaaaat
      601 aagcatatag ttcttgaaat ccaaaaggct attgctagag tagagcgtat cgtaaattca
      661 actttacttt ttactaaggg tgtgcacatc aatgctttaa attttaatct tttagagtta
      721 aaagaagagt gtgaaagtgc cattaactct tataatttca cttctcaaat agactttgaa
      781 atatcttttt tggataagca gatttgtgct gataaagctc ttcttggttt ggttttgcaa
      841 aatttgattt ataatgctat tgatgcgata gaagaaagcg aatgtgaaaa gcctatgatt
      901 aaaattttag caagttgtga taatgaaaaa atatgcatca gagtgtatga taatggttgt
      961 gaaataaaag atgagaaatt ggtttttgaa gcttttaaaa caacaaaact taaaggcaat
     1021 gggcttggct tgtctctttc taaagaaatc ataaacgctc ataagggaga gttaagtttt
     1081 caaagcgatc ctaagaattt ttattttacc ttgcctttgg tgtgataaat attttcttt
//
LOCUS       DAEDTT010000165         1136 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.166, whole genome shotgun sequence.
ACCESSION   DAEDTT010000165 DAEDTT010000000
VERSION     DAEDTT010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.166"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            100..>1136
                     /locus_tag="KLC54_001669"
     CDS             100..>1136
                     /locus_tag="KLC54_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HBD9178027.1"
                     /translation="MNSTFSIIEHQAFSKEDLKEIFKEKAERFYKELEDFAKNNENLL
                     GFKNKNTLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLRRYYELDN
                     ISKNNDFYEQDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFLDE
                     FDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKRNLIHKERFFTSNDEFVLDIAPNR
                     LIKSTLNFLKSKTSLNKFRLIKSMQILDEVEFSKNYEKDFSYKISRHFDYYENLLLWC
                     KIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNPTQDIKVQNSGKYLISK
                     NDENCFMLKPD"
BASE COUNT          473 a          126 c          157 g          380 t
ORIGIN      
        1 tttataatat tgcttcattt gatgataaaa tttgggataa aatagaaata tatcaagcaa
       61 tttataatga tgaaatagca aataaattaa aaaacgaaaa tgaatagcac tttttccatc
      121 atcgaacacc aagctttttc taaagaagat ttaaaagaaa ttttcaaaga aaaagctgaa
      181 agattttata aagaattaga agattttgca aaaaataatg aaaatcttct aggctttaaa
      241 aataaaaata ccttaaaagc taaaaattat gtcggcatta tacagactaa aagtggggtt
      301 ttggagatct tgccaaaatg cacgaattta gatagctata aaaaagaaga tagctcttca
      361 aatcacgata aagaaaaact aagaagatac tatgaattag acaatatttc taaaaataat
      421 gatttttatg aacaagattt taaatttaat cctaaaaatc ttttgataaa tatgctaaaa
      481 accttaaaaa actctccctt taaaaaatcg caaatttcat ctttacaaag ttctaaaatt
      541 cctttatttg aagtgtttat cactatgttt ttagatgaat ttgatagcgt gtataaaaaa
      601 ggcttgatga gatcttatct aagttgcgaa gaaaataggg cttttttgaa gggaaaatta
      661 ctatttaacg agcatatcaa gcgaaatttg atacacaaag aaagattttt tacaagcaat
      721 gatgagtttg ttttagatat agcacccaat cgtttgataa aatcaacgct aaatttttta
      781 aaatccaaaa caagtttgaa taaatttaga cttataaaat ctatgcaaat tctcgatgag
      841 gtagaatttt ctaaaaatta tgaaaaagat tttagctata aaatttcaag acattttgat
      901 tattatgaaa acttgctttt gtggtgtaaa attttcttaa aaaatgaaag ttttatgcct
      961 tatcatggta aaaatgaagc ttttgctttg ctttttccta tggagaaaat ttttgaagat
     1021 tatgtagctt atatgctaaa aaaagtaaat ccaactcaag atattaaagt ccaaaatagt
     1081 ggaaagtatt taatctcaaa aaatgatgaa aattgtttca tgttaaagcc tgattt
//
LOCUS       DAEDTT010000166         1135 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.167, whole genome shotgun sequence.
ACCESSION   DAEDTT010000166 DAEDTT010000000
VERSION     DAEDTT010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.167"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>1135
                     /locus_tag="KLC54_001670"
     CDS             <1..>1135
                     /locus_tag="KLC54_001670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178028.1"
                     /translation="SQQASVYKSFKLNLKPKILNEKDENSSSFQDQKTDVAQTMLQRL
                     EDEKVFNQKVSDKVKKAERGMTTIYFRDPITNNLVRSALSSIAINKMGIEFDKEDMTK
                     RLDGSYILNGKAENFVAGWYADIAYTRAYVASDRNNDGYLEDYELEDTKSGFVAQETN
                     LGLFVQSYTQLNGSVDTLFGFEKDFREMRPDDTKDTDYAGRTIGLELDKMIRKDGDFD
                     GELSFSETGMQAVKTKAPNSGWTESVGILTLTKFDQTNTMEIKDILDKLGKGVKYDDL
                     SEDEKSLLKMQLSDKIFDEVEDKETGNKKLVFNLDKFKIFYEGFVDLFKQRSVKMLGL
                     KPEDATKLNYDNLGEIVNEMKQTYFDTNSTSYGKIADLIKIWA"
BASE COUNT          454 a          117 c          211 g          353 t
ORIGIN      
        1 cttctcagca agctagtgta tataaatctt ttaagttaaa tttaaaacca aagattctta
       61 atgaaaaaga cgaaaattcc tcttcatttc aagatcaaaa aacagatgta gctcaaacta
      121 tgcttcaaag attagaagat gaaaaagttt tcaatcaaaa ggtaagtgat aaagtgaaaa
      181 aagctgaaag aggtatgact actatatatt ttagagatcc tattacaaat aaccttgttc
      241 gtagtgcttt aagttcaata gctatcaata aaatgggaat tgaatttgat aaagaagata
      301 tgactaaaag acttgatgga tcatatatat taaatggaaa agctgaaaat tttgtggctg
      361 gatggtatgc tgatatagca tatactagag cttatgtggc tagcgataga aataatgatg
      421 gatatttaga agattatgag cttgaagata cgaaaagtgg ttttgtagca caggaaacaa
      481 atttaggact ttttgtgcaa tcttatacac aattaaatgg tagtgtagat actctatttg
      541 gttttgaaaa agattttaga gaaatgcgtc cagatgatac caaagataca gattatgctg
      601 gtagaactat aggcttagag cttgataaaa tgataagaaa agatggagat tttgatggag
      661 agcttagttt tagcgaaact ggcatgcaag cagtaaaaac caaagctcca aattctggat
      721 ggactgaaag tgtaggtata ttaactttaa ctaaatttga tcaaactaat acaatggaaa
      781 ttaaagatat cttggataaa ttaggtaaag gtgtaaaata tgatgattta agtgaagatg
      841 aaaaatctct acttaaaatg caattatctg ataaaatttt tgatgaagtt gaagataaag
      901 aaactggtaa taaaaaactt gtttttaatc tggataaatt taaaattttc tatgaaggtt
      961 ttgtggattt attcaaacaa agaagtgtaa aaatgctagg tttaaaacct gaagatgcaa
     1021 ctaaacttaa ttatgacaat cttggtgaaa ttgtcaacga aatgaagcaa acttattttg
     1081 atacaaattc tacaagttat ggaaaaatag ctgatttaat taaaatttgg gctta
//
LOCUS       DAEDTT010000167         1131 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.168, whole genome shotgun sequence.
ACCESSION   DAEDTT010000167 DAEDTT010000000
VERSION     DAEDTT010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1131
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.168"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            4..747
                     /locus_tag="KLC54_001671"
     CDS             4..747
                     /locus_tag="KLC54_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HBD9178029.1"
                     /translation="MTIDLNHNFTSFVLLDEVDFNFSELKSILEDKFNIKIADENFTK
                     EGVIFSYENMLITLNLIKNPIPNHEAEYYANFNFMWKDALEQTKKHKAHLLIAVLSQD
                     QSKLEQAKMFTKIAALCLDNKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYV
                     SVYPSENGVNAYTYGLRNFDKLELEVCDLNIEEKELFFCIYDIVLHILTYDINLKDKD
                     ILKFEDGKEIKFIKSQGISVENESLKIIF"
     gene            812..>1131
                     /locus_tag="KLC54_001672"
     CDS             812..>1131
                     /locus_tag="KLC54_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HBD9178030.1"
                     /translation="MKAKLTLLALLGATVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGDWKEVDGKYKALPHTILPSVMKKVSATQPNA
                     QILE"
BASE COUNT          425 a          125 c          186 g          395 t
ORIGIN      
        1 aacatgacta tagatttaaa tcacaatttt acctcttttg ttcttcttga tgaagttgat
       61 tttaattttt cggagttaaa aagcatttta gaagataaat ttaatataaa aatagctgat
      121 gaaaatttta ccaaagaggg agtgattttt tcatatgaaa atatgttgat tactctaaat
      181 ttgattaaaa atcctatacc taatcacgaa gcagaatact atgcaaattt taattttatg
      241 tggaaagatg ccttagagca aactaaaaaa cataaagctc atcttcttat agcggtgcta
      301 agtcaagatc aaagcaaatt agaacaagct aaaatgttta cgaaaattgc agctttatgt
      361 ttggataata aacatgcttt aggtttttat acaggtgcag ttgttttaga gcccagtttt
      421 tatatagaaa atgcaaaaat gttagatgat aatcgcttgc cggtatataa ttggatatat
      481 gttagtgttt atcctagtga aaatggagtt aatgcttata cttatgggct tagaaatttt
      541 gataaattag aacttgaagt ttgtgattta aacatagaag aaaaagaact tttcttttgt
      601 atttatgata ttgttttgca tattttaact tatgatatta atctaaaaga taaagatatt
      661 ttaaaatttg aagatggaaa agaaataaaa tttataaaaa gtcaaggtat aagtgttgag
      721 aatgaaagct tgaaaattat tttttaagtt tcacattcac ttcacagttt tgagttaaac
      781 tttcgccaac caagacaaaa aaggagaaac tatgaaagca aaattaactt tacttgcttt
      841 gttgggtgct acggtgcttt tagctaaaga tatggttgtt cctgctagcg aacttccaaa
      901 taatgccaaa gaatttattt ctaaaaattt taaaaccgct caaattggtt tggtgaaaaa
      961 agatatagat tcttatgatg taattttaaa tgatggaact gaaattgatt ttatgatcaa
     1021 tggagattgg aaagaagttg atggaaaata taaggcttta ccacatacta ttttacctag
     1081 tgttatgaaa aaagtaagtg caactcaacc aaatgctcaa attcttgaaa t
//
LOCUS       DAEDTT010000168         1058 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.169, whole genome shotgun sequence.
ACCESSION   DAEDTT010000168 DAEDTT010000000
VERSION     DAEDTT010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.169"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..640
                     /gene="trmA"
                     /locus_tag="KLC54_001673"
     CDS             <1..640
                     /gene="trmA"
                     /locus_tag="KLC54_001673"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HBD9178031.1"
                     /translation="SKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTTINEKM
                     ITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCKLNN
                     TTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLIK
                     KYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSKV"
     gene            complement(627..1043)
                     /locus_tag="KLC54_001674"
     CDS             complement(627..1043)
                     /locus_tag="KLC54_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HBD9178032.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGAFIHPFVFVLCIAIVILAKLMNYFFIPC"
BASE COUNT          440 a          153 c          133 g          332 t
ORIGIN      
        1 aagtaaaggc aaaaaactta tttttaaaac agaaaatcta agacaaactt taaatattca
       61 agatagaaaa atattttatg aatttaacaa cgattgtttt attcagccta acactactat
      121 aaatgaaaaa atgattactt gggtgtgtga aattttaaat actcaaaaaa gaatggattt
      181 acttgagctt tactgtggat atggaaattt tactttagct ttagcaccat tcttttttaa
      241 agttttagcc actgaaattt caaaaagtaa tattaatttt gctttaaaaa attgcaaact
      301 taataataca acaaatatcc actttgcaag actttcaagc gaagaattaa gtcttgctat
      361 caaaaaagaa agagaatttt ttcgtttaaa agatattcga ttggatgatt ttaatttctc
      421 tcatgtttta gttgatccac cccgtgcagg acttgataaa agcgtaattg acttaataaa
      481 aaaatatgaa aatattattt atatttcttg taatcctatc actttaaaag aaaatttaaa
      541 agaattaagc ctaacacata gagtggaaga gtttgctctt tttgatcaat ttgtcaatac
      601 tccacatctt gaatgcggag tatttcttag caaggtataa aaaaataatt cattaattta
      661 gccagtatta ctatcgcgat acaaagcaca aatacaaaag ggtggataaa agcaccgagt
      721 ggatttttct tctttaatat aaaatgacaa aataaagaaa aaacaactaa agataaaatt
      781 ccaaaagcca aaataatttt tacagcaaaa agtaaattta aaggtttaaa atgaaaacct
      841 gccaaagcac ctccgcttaa aaaaagcaaa agaaccacaa aaggcattat tttaacccca
      901 gtagcactaa aaagactttt gtcaaaatta ggatttttct ttttaactac gcccaaaaca
      961 aatacatcaa caaacaaata acctataaac aaaatagcac aaagaagatg gattgttaaa
     1021 gtatatggat aaaattcttc catttttccc tccttatt
//
LOCUS       DAEDTT010000169         1005 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.170, whole genome shotgun sequence.
ACCESSION   DAEDTT010000169 DAEDTT010000000
VERSION     DAEDTT010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.170"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>1005
                     /locus_tag="KLC54_001675"
     CDS             <1..>1005
                     /locus_tag="KLC54_001675"
                     /inference="COORDINATES: protein motif:HMM:NF025751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4422 domain-containing protein"
                     /protein_id="HBD9178033.1"
                     /translation="YHNLKNTKNNSNKKTKILLAYHKPAVLFKDNILTPIHLGRSLAT
                     KASKDGEISKEDFEWMRENMIGDDTGDNISHLNRYFCELTGMYWAWKNYDKLGNPDYI
                     GFMHYRRFFIFNQPKKCWNIFDKYSHELIQSTANYHEQIFSCLHNDITVALPGLLPEN
                     IEKQYKMHAFHISKDFDLFKKIIQQEYPQYYDILEEYIQGHKAYFANMFIMNKELFFR
                     YCDFMFSIVFKLHDSIEDYDKRNYQQIRAIGYLSETITGLFYKILEKEKLKIETLSLG
                     IMMKNEVQKDIYPIFDKNSIPVVISCVHQEVKYLSVTLQSIIENSNFTNNYDIIVLNN
                     "
BASE COUNT          391 a          102 c          150 g          362 t
ORIGIN      
        1 aatatcataa tttaaaaaat acaaaaaata attcaaataa aaaaactaaa attttactag
       61 cctatcataa gccagcggtt ttatttaaag ataatatttt aactcctatc catttaggaa
      121 gatctttggc tactaaagct tctaaagatg gagaaatatc taaagaagat tttgaatgga
      181 tgcgtgaaaa tatgataggg gatgatacag gagataatat ctctcatctt aatagatatt
      241 tttgtgaact tactggtatg tattgggctt ggaagaatta tgataaatta ggcaatcccg
      301 attatatagg ttttatgcac tatagaagat tttttatatt taatcagcct aaaaaatgct
      361 ggaatatttt tgataaatat agtcatgaac taatacaatc tacggcaaat tatcatgaac
      421 aaattttttc ttgtttgcat aatgatatta cggtagcgtt accaggtttg ttacctgaaa
      481 atatagaaaa acagtataaa atgcatgctt ttcatatttc taaagatttt gatttgttta
      541 aaaagataat acaacaagaa tatcctcaat attatgatat tttagaagag tatatacagg
      601 gtcataaggc atattttgca aatatgttta taatgaataa agaattgttt tttcgttatt
      661 gtgattttat gtttagtatt gtgtttaaac tccatgattc tattgaggat tatgataaga
      721 gaaattatca gcagattaga gctattgggt atttatcaga aacaattact ggattatttt
      781 ataaaatttt agaaaaagaa aaattaaaaa ttgaaactct atctttaggc attatgatga
      841 aaaacgaggt gcagaaagat atttacccaa tttttgataa aaatagtatt cccgtagtaa
      901 ttagttgtgt acatcaagaa gtaaaatatt taagtgttac attacaatct attattgaaa
      961 attctaattt tacaaataat tatgatatta tagtattaaa caatg
//
LOCUS       DAEDTT010000170          997 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.171, whole genome shotgun sequence.
ACCESSION   DAEDTT010000170 DAEDTT010000000
VERSION     DAEDTT010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..997
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.171"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..785
                     /locus_tag="KLC54_001676"
     CDS             <1..785
                     /locus_tag="KLC54_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002891861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178034.1"
                     /translation="GFFDFDEKSKNPTSPLNPWAYIRVKNEALTLKASLKSILPAIQR
                     GIIGYNDCNDGSEEIILEFCKQYPSFIPVKYPYEVQIENPQSEENKLYSYYNYVASFI
                     PQGEWLIKIDVDHIYDAKRLYKSFYIPKKDYDIVVYSKMDFLINDEDAFIVKYKNLNA
                     IINNKSNDHWLIKNNHLKWAESMHEDRYCIEHLDVKKLKIYQTEFLNYHFPYFKRSLD
                     KNKIELIPIDDFSIKEYKDIISPDMVTKEKLLYLKKYIKENQ"
     gene            782..>997
                     /locus_tag="KLC54_001677"
     CDS             782..>997
                     /locus_tag="KLC54_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178035.1"
                     /translation="MKKSKSIQIIKQQGIAEFIKYKKIKIYTKYEKKFNINIFTPYLL
                     KFCKPLKDDYKFILFSYGVSGHWAFKSF"
BASE COUNT          434 a          100 c          137 g          326 t
ORIGIN      
        1 aaggattttt tgattttgac gaaaaatcta aaaatccaac atcaccttta aatccatggg
       61 cttatataag agtaaaaaat gaagcattaa ctttgaaagc ttcgttaaaa agtatacttc
      121 cggctataca aagagggatt ataggatata atgattgcaa tgatggaagc gaagagataa
      181 tcttagaatt ttgcaaacag tatccttctt ttataccagt aaaataccct tatgaagtac
      241 aaattgaaaa tccacaaagt gaagaaaata aactttatag ttattataat tatgttgcaa
      301 gctttattcc acaaggagaa tggcttataa aaatagatgt tgatcatatt tatgatgcta
      361 aaagattata caaaagtttt tatataccta aaaaagatta tgatatagtg gtttattcta
      421 aaatggattt tctcataaat gatgaagatg cttttatagt taagtataaa aatcttaatg
      481 ctataataaa caataagagt aatgatcatt ggttgataaa aaataatcat cttaaatggg
      541 cagaaagtat gcatgaagat aggtattgta tagagcatct agatgtaaaa aagttaaaaa
      601 tttatcaaac agaattttta aattatcatt ttccatattt taagagaagc ttagataaaa
      661 ataagataga attaattccc atagatgatt ttagtatcaa agaatataaa gatatcatat
      721 cacctgatat ggtaactaaa gaaaaattgc tatatttaaa aaaatacata aaggaaaatc
      781 aatgaaaaaa tcgaaatcca tacaaataat caaacaacaa ggaatagctg aatttataaa
      841 atataaaaaa ataaaaatat acactaaata tgagaaaaaa tttaatatca atatttttac
      901 tccttattta ttaaaatttt gcaaaccttt aaaagatgat tataaattta tattatttag
      961 ttatggtgta agtgggcatt gggcttttaa aagtttt
//
LOCUS       DAEDTT010000171          959 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.172, whole genome shotgun sequence.
ACCESSION   DAEDTT010000171 DAEDTT010000000
VERSION     DAEDTT010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 959)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 959)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..959
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.172"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..407
                     /locus_tag="KLC54_001678"
     CDS             <1..407
                     /locus_tag="KLC54_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF115 domain-containing protein"
                     /protein_id="HBD9178036.1"
                     /translation="TLTTNRGAKILNKILATFKREKQNTLICLEHAIRLNDVLKIILA
                     SDRKFPIDFLKNTYESIKKFEIFLEENSFLNDGVLKGVIFHKGKLLSEVIVSKIEDER
                     EYLLIYLTFYKQWLEIFICRFQLKCDIYNFLV"
     gene            490..>959
                     /locus_tag="KLC54_001679"
     CDS             490..>959
                     /locus_tag="KLC54_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HBD9178037.1"
                     /translation="MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINKLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTV"
BASE COUNT          377 a          114 c          155 g          313 t
ORIGIN      
        1 aaactttaac aaccaatcgt ggtgctaaaa ttttaaataa aattttagca actttcaaaa
       61 gggaaaaaca aaatacttta atttgcttag aacatgctat aaggttaaat gatgtattga
      121 aaataatttt agctagcgat agaaaattcc ctatagattt tttaaaaaat acatatgaaa
      181 gcatcaaaaa atttgaaatt tttttggaag aaaattcttt tttaaatgat ggtgttttaa
      241 aaggagttat ttttcataaa ggtaaattat tgagtgaagt tattgttagt aaaattgaag
      301 atgaaagaga gtatttatta atatacttga cattttataa acagtggctt gaaattttta
      361 tttgcagatt ccaattaaaa tgcgatattt ataatttttt agtttaaggt ataaattttt
      421 aaaaaaaagt aacgatatag catttaacaa gctcatggat gagtttgaaa ttatttaaaa
      481 ggatttaaaa tgggatttcg tattaacaca aatgttgcag cattgaatgc aaaagcaaac
      541 tctgatctta atgctaaaag tttagatgct tctttaagca gacttagttc aggtcttaga
      601 attaactcag cagcagatga tgcttcaggg atggcgatag cagatagctt aagatctcaa
      661 gcaaatactt taggtcaagc tatatcaaat ggtaatgatg ctttaggtat cttacaaacc
      721 gcagataaag ctatggatga gcaattaaaa attcttgata ctatcaagac taaagctact
      781 caagcagctc aagatggaca aagtttaaaa acaagaacta tgcttcaagc agatattaat
      841 aaattaatgg aagagcttga taatatcgct aatactactt catttaatgg taagcaactt
      901 ttaagtggaa attttaccaa tcaagaattc caaatcggcg caagttcaaa ccaaactgt
//
LOCUS       DAEDTT010000172          952 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.173, whole genome shotgun sequence.
ACCESSION   DAEDTT010000172 DAEDTT010000000
VERSION     DAEDTT010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 952)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 952)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..952
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.173"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..157
                     /locus_tag="KLC54_001680"
     CDS             <1..157
                     /locus_tag="KLC54_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178038.1"
                     /translation="YEKNQKSKLESLEKVLQSLKNQDANILNSFEENLEKIEKLKQLE
                     MGLLNAD"
     gene            147..>952
                     /locus_tag="KLC54_001681"
     CDS             147..>952
                     /locus_tag="KLC54_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HBD9178039.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGCDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLSTEELDNVLNYAKSVFLKYFNELIAISCKEAKDEQSYEKSNFQSLLD"
BASE COUNT          365 a           98 c          164 g          325 t
ORIGIN      
        1 ttatgaaaaa aatcaaaaat caaaattaga aagtcttgaa aaagttttac agagtctgaa
       61 aaatcaagat gctaatattt taaattcttt tgaagaaaat ttagaaaaaa ttgaaaaatt
      121 aaaacaactt gaaatggggc ttttaaatgc agattaatct tttaaatgat tttataaaag
      181 cctatgaaaa tacctatagt gtgagttttg atgatagttt taaagggcgt attcaagagc
      241 tttgtaagga acttaacgag ccttttatgc acgcaagtta tgctttagaa aatgaattaa
      301 aagagcttgt gttttctttg gataagaatg ttaatatcgc tattataggg cagttttcaa
      361 gtggtaaatc aagtttgcta aatttgatat tagggtgtga ttgtttgcct acgggtgttg
      421 ttcctgttac ttttaaacct acttttttac gctatgcaaa agaatatttt ttaagagtag
      481 aatttgaaga tggaagtgat attatcacaa atatagaaaa attagccttt tatacggatc
      541 aaagaaatga agtaaaacaa gcaaaaagtt tgcatatttt tgcacctatt cctttacttg
      601 aaaaaattac tcttgtagat actccaggtt taaatgcaaa tgaaaatgat actttaacaa
      661 ctcttgatga gcttaaaaat attcatgggg cgatttggtt aagtttgatt gataatgcag
      721 gtaaaaaaag tgaagaagat gccataaaag caaatttgga acttttagga gaaaatagca
      781 tttgtgtatt aaatcaaaaa gataaattaa gcacagaaga actagataat gttttaaatt
      841 atgcaaaaag tgtgttttta aaatatttta atgagcttat tgctatttct tgcaaagaag
      901 ctaaagatga gcaaagctat gaaaaatcta attttcaatc tttgcttgat tt
//
LOCUS       DAEDTT010000173          938 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.174, whole genome shotgun sequence.
ACCESSION   DAEDTT010000173 DAEDTT010000000
VERSION     DAEDTT010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.174"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            300..>938
                     /locus_tag="KLC54_001682"
     CDS             300..>938
                     /locus_tag="KLC54_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HBD9178040.1"
                     /translation="MIQTRFICGSRILFKGIKTKFESILKENKNDFAKLLLENFKEFD
                     IPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNYALNFIDEKNLSELRLAGDFLL
                     SLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHFGANELLVQKALQSMHTIGFYT
                     HFLAKQIQDGLNHTLKQEYKFKTLVEVLEYLLKLEDKQVIFDLNLVFALRRLK"
BASE COUNT          332 a          103 c          147 g          356 t
ORIGIN      
        1 tggataattt cataaaaaaa gcttatgata tagttcttaa agattatttt gatgattttt
       61 cacctccaag tgataatatc cctttttgtg ttttagcaag caaagcatat gcaaataata
      121 gtctttgttt taatgaaagt atttctttga tttttgttta taaagatatt aaggcttttc
      181 atttaaaacc tatgattaag gcttttatcg aaattttaaa tgatgcgcat ttgcaaattg
      241 actctgttat cttagaattt aacggacttt ataatgctag caatgagctt aagacttcta
      301 taatacaaac tcgtttcata tgtggttcta ggattttatt taaagggatt aagacaaaat
      361 ttgagagtat tttaaaagaa aataaaaatg attttgccaa gcttttgcta gaaaatttta
      421 aagaatttga tattccattt ataaagcagg aatttaatat cttaaaagat tttggcggat
      481 taaatcattt aagatcctta gagagtttgc ttgttctttt taagacttct ccaaaaaatt
      541 atgccttaaa ttttatagat gaaaaaaatt taagcgagtt gcgtttagct ggagattttt
      601 tactttcttt aaaatcagcg atgaatttat taagcgctaa agatgaggat gagtttttac
      661 ttattaatgt tcatgatttg agtgaattaa tgtataaaaa agctaaaaaa cattttggag
      721 caaatgagtt gttggttcaa aaggctttgc aaagtatgca tactataggt ttttatacgc
      781 actttctagc aaagcaaatt caagatggat taaatcatac tcttaaacaa gaatataaat
      841 ttaaaactct tgtggaagtt ttagaatact tattaaaact tgaagataaa caggttattt
      901 tcgatcttaa cttggttttt gccctaagaa gattgaaa
//
LOCUS       DAEDTT010000174          927 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.175, whole genome shotgun sequence.
ACCESSION   DAEDTT010000174 DAEDTT010000000
VERSION     DAEDTT010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.175"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            28..>927
                     /locus_tag="KLC54_001683"
     CDS             28..>927
                     /locus_tag="KLC54_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HBD9178041.1"
                     /translation="MKSVKLKVALIANLIAVVCLVILGVITFMFVKQAIFHEVVKAET
                     NYVKTAKNSMESFKARNSLALESLAKSILKHPVEQLDSQDALMRYVGKDLKNFRDAGR
                     FLAVYIAQPNGELVVSDPDSDAKKVDFGTYGKADNYDARTREYYIEAVKTNKLYVTPS
                     YIDATTNLPCFTYSTPLYKDGKFIGVLAVDVLVTDLQAEFENLPGRTFVFDEENKVFA
                     STDKTLLQQGYDISAIANLAKIKENFEPFEYTRPKDGSERFAVCTKVSGVYTACVGEP
                     IEQIEAPVYKIAFIQTAIVIFTSI"
BASE COUNT          332 a          110 c          174 g          311 t
ORIGIN      
        1 ataatattag aaaggagcgc ttaaattatg aaaagcgtaa aattgaaggt tgcactgatt
       61 gcaaatttaa tcgcagtagt gtgtttggta attttaggtg ttataacatt tatgtttgta
      121 aagcaagcaa tttttcatga agttgtaaaa gctgaaacaa actatgttaa aacagctaaa
      181 aattctatgg agtcttttaa ggcaagaaat tctttagctc ttgaaagttt ggctaaaagt
      241 attttaaagc atcctgtaga acagttagat agtcaagatg ctttaatgcg ttatgttgga
      301 aaagatttaa agaattttag agatgctgga agatttttag cagtttatat cgctcaacca
      361 aacggagaac ttgttgtaag tgatccagat tctgatgcta aaaaagtaga ttttggaact
      421 tatggaaaag ctgataatta tgatgctaga acaagagagt attatataga agcagtaaaa
      481 acaaataaac tttatgttac cccatcttat atagatgcaa ctacaaattt accttgtttt
      541 acatattcta cccctcttta taaagatggt aaatttatag gggttttagc tgtggatgtt
      601 cttgtaacag atttgcaagc agaatttgag aatttaccag gtagaacttt tgtatttgat
      661 gaagaaaata aagtatttgc ttctacagac aaaactcttt tgcaacaagg ttatgatatt
      721 agtgcaattg caaatcttgc aaaaattaaa gaaaattttg aaccttttga atatactaga
      781 ccaaaagatg gtagtgaaag atttgctgtg tgtacaaaag tttctggggt ttatactgct
      841 tgcgttggag agccaataga acaaatagaa gctccagttt ataaaattgc atttatacaa
      901 actgcgattg ttatttttac aagtatt
//
LOCUS       DAEDTT010000175          869 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.177, whole genome shotgun sequence.
ACCESSION   DAEDTT010000175 DAEDTT010000000
VERSION     DAEDTT010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.177"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            12..413
                     /locus_tag="KLC54_001684"
     CDS             12..413
                     /locus_tag="KLC54_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WxcM-like domain-containing protein"
                     /protein_id="HBD9178042.1"
                     /translation="MKNYKILKLDAIKDDRGKLVALESNKEIPFEIKRVYYIFDTDPN
                     FPRGAHAHKNLEQVLIMMSGSCDIILNNGKNCEKICLNRPDMGLYIGKNMWREMKNFS
                     YGAKLLVLASDFYDEKEYIRDYGEFLKVIKT"
     gene            410..>869
                     /locus_tag="KLC54_001685"
     CDS             410..>869
                     /locus_tag="KLC54_001685"
                     /inference="COORDINATES: protein motif:HMM:NF012760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178043.1"
                     /translation="MNIILIGTTTNFDIFNSILQNKYIKVIGAIIDKNLTSNIDSKSH
                     LDFLHKNNIKEIQLEDLPLIKYDLCLIITYSKILDMKYFKNGININIHGGILPYWRGF
                     YANIWAVLNNQSYIGYTLHALNKKMDDGAIYYIIKERIHKNEKFFNANKRL"
BASE COUNT          377 a           81 c          129 g          282 t
ORIGIN      
        1 ttaaaagtgg catgaaaaat tataaaattt taaagttaga tgccataaaa gatgatagag
       61 gtaaattagt agctttagaa agcaataaag aaattccatt tgagataaaa agggtgtatt
      121 atatatttga tacagatcca aattttccaa gaggagcaca tgcacataaa aatttagagc
      181 aagtgcttat aatgatgagt ggttcttgtg atataatact aaataatgga aaaaattgtg
      241 aaaaaatttg tttaaatcgt cctgatatgg gtctttatat aggtaaaaat atgtggagag
      301 aaatgaaaaa tttttcttat ggagcaaaat tgctagtttt ggcaagtgat ttttatgatg
      361 aaaaagaata tattagagac tatggagaat ttttaaaggt tattaaaaca tgaatattat
      421 attgattgga acaacaacaa attttgatat ttttaactca attttacaaa ataaatatat
      481 aaaagttata ggagccatta tagataaaaa tttaacatcc aacatagata gtaaatcaca
      541 tttagatttt cttcataaaa ataatatcaa agaaatacaa ttagaagatt tacctttaat
      601 aaaatatgat ttatgtttaa taattaccta ctctaaaata ctcgatatga aatactttaa
      661 aaatggcatc aatataaata ttcacggagg catattacca tactggagag gattttacgc
      721 aaatatatgg gctgtattaa ataatcaatc atatatagga tatacattgc atgcattaaa
      781 caaaaaaatg gatgatggtg ctatatatta tataataaaa gaacgcatac ataaaaatga
      841 aaaatttttt aatgccaata aacgattaa
//
LOCUS       DAEDTT010000176          846 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.178, whole genome shotgun sequence.
ACCESSION   DAEDTT010000176 DAEDTT010000000
VERSION     DAEDTT010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.178"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..203
                     /locus_tag="KLC54_001686"
     CDS             <1..203
                     /locus_tag="KLC54_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HBD9178044.1"
                     /translation="QNQVTSTINNITVTQVNVKAAESQIRDVDFASESANYSKANILA
                     QSGSYAMAQANSSQQNVLRLLQ"
     gene            377..>846
                     /locus_tag="KLC54_001687"
     CDS             377..>846
                     /locus_tag="KLC54_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HBD9178045.1"
                     /translation="MGFRINTNIGALNAHANSVVNSNELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQT"
BASE COUNT          315 a          143 c          134 g          254 t
ORIGIN      
        1 tacaaaatca agttacatca actataaata acattactgt aactcaagtt aatgttaaag
       61 cagcagaatc gcaaatcaga gatgtagact ttgcaagtga gagtgcaaac tactctaaag
      121 ctaacatctt agcccaaagt ggttcttatg caatggctca agcaaattct agtcagcaaa
      181 atgttttaag attattacaa tagttaaatc ttaaaatcac tttacattct tttaagaatg
      241 ctgcaattta tacaaatcca agcctagttt aaatactagg ctttttattt ataagcttta
      301 aaatttttaa tcaaattaaa acttggaaca cttcttgctt taatcttttc gatgcaatat
      361 tttgaaagga tttaaaatgg gttttaggat aaacaccaac atcggtgcat taaatgcaca
      421 tgcaaattca gttgttaact ctaatgaact tgacaagtct ttaagtagac ttagttcagg
      481 tcttagaatt aactcagcag cagatgatgc ttcagggatg gcgatagcag attctttgcg
      541 ttcacaagca gcaactttag gtcaagctat aaacaatggt aatgatgcca taggtatttt
      601 gcaaactgca gataaagcta tggatgagca attaaaaatt cttgatacta tcaagactaa
      661 agctactcaa gcagctcaag atggacaaag tttaaaaaca agaactatgc ttcaagcaga
      721 tattaaccgc ttgatggaag agcttgataa tatcgcaaat acaacttcat ttaacggcaa
      781 acaactttta agtggaaatt ttaccaatca agaattccaa atcggcgcaa gttcaaacca
      841 aactat
//
LOCUS       DAEDTT010000177          840 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.179, whole genome shotgun sequence.
ACCESSION   DAEDTT010000177 DAEDTT010000000
VERSION     DAEDTT010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.179"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>840
                     /locus_tag="KLC54_001688"
     CDS             <1..>840
                     /locus_tag="KLC54_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HBD9178046.1"
                     /translation="VIRNLDPDSKISLSCYENFYKNISLMLKNIPLKRIINERKGLFD
                     NCIVVCAGPSLQKQIPLLRQYQKKFVIFCVDGAYPLLVKNNIIPDYVLNLDFEEYPLK
                     FFEEVDAENKTLFILAASTHPSVVEYLYKKQIPLSIALNDNLPYQNLHIDEFGYLEFG
                     THVGHACYALAIALKFKNIIIIGQDLSFDQRGNSHFDSFDLGSDIDATLDIPTLKRIA
                     YGGIGEVLTHLAWDDYRKKLEDLFARNLEVNFFNATEGGAKIEFTKELDFKSCCKQFA
                     NLN"
BASE COUNT          296 a           99 c          139 g          306 t
ORIGIN      
        1 cgtaataaga aatttagatc ctgattccaa aatctctttg tcttgttatg agaattttta
       61 caaaaacata tctttaatgt taaaaaatat acctttaaaa aggattatta atgaaagaaa
      121 aggtcttttt gataattgta tcgtagtatg cgctggccct agtcttcaaa agcaaattcc
      181 attattaagg caatatcaaa aaaaatttgt gattttttgt gttgatggag cttatccttt
      241 gcttgtaaaa aacaatataa ttcctgatta tgttttaaat cttgattttg aagaatatcc
      301 acttaaattt tttgaagagg ttgatgcaga aaataaaacc ttgtttatat tagcagcaag
      361 cactcatcct agtgtagttg agtatcttta taaaaaacaa attcctttat ctatagcatt
      421 aaacgacaat cttccttatc aaaatctcca tattgatgaa tttggctatc ttgaatttgg
      481 aacccatgtt gggcatgctt gttatgcttt ggctattgct ttaaaattta aaaatataat
      541 tattattggg caagatttat cttttgatca aagaggaaat tctcattttg atagttttga
      601 tttagggagt gatatagatg caaccttaga tattcctaca ttaaaaagaa ttgcttatgg
      661 aggaatagga gaggttttga cacatttagc ttgggatgat tatagaaaga agttagaaga
      721 tttatttgca agaaacttag aggtaaattt tttcaatgct acagagggtg gagctaaaat
      781 agaatttaca aaagagcttg attttaaatc atgttgtaag caatttgcaa atttaaataa
//
LOCUS       DAEDTT010000178          810 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.181, whole genome shotgun sequence.
ACCESSION   DAEDTT010000178 DAEDTT010000000
VERSION     DAEDTT010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.181"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>810
                     /locus_tag="KLC54_001689"
     CDS             <1..>810
                     /locus_tag="KLC54_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HBD9178047.1"
                     /translation="KTTGSIKTNIDENINLEITNFDISDDAIKSGIVNVQASNIKVNG
                     NVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKNV
                     FVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSDT
                     ECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPNAIEMKFSNLYH
                     DIIKKYNHLSISYKKFIKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFL"
BASE COUNT          376 a          106 c           97 g          231 t
ORIGIN      
        1 aaaacaaccg gttcaatcaa aacaaatatc gatgaaaata taaacttaga aatcactaat
       61 tttgatataa gtgatgatgc tattaaatca ggtattgtaa atgttcaagc ttcaaatata
      121 aaagtaaatg ggaatgttgg agcaacaaaa ctttatggaa aaaatatcag tatcaaaggc
      181 ttaactcatg caaaaagcga aatttttgca caagatattt ttattacaac acacaaagga
      241 actttgcaag ctgacactgt atatataaaa aatttagaaa atgggacaat tatagctaaa
      301 aatgtatttg ttgaaaactg catgggtgga aaaatagaag cagaaaatat ttatatttgc
      361 aatttactaa cggataatac tttatatcca agaaaaaatc taatcataac aaacaatata
      421 aaatttaaaa acaatatcgt agtttcacca ctagtttcta ttgaaaacaa ctcagataca
      481 gaatgcgaaa atcttaaaaa tctaagcctt aaaataaaaa gtaagcttga tgacaccata
      541 agcaaaatgc aaaattacta tgattatcta atcaaaaatc aaatcaaaat catcaaactt
      601 caaaagacta aaaatcctaa cgccatagaa atgaaatttt caaatcttta tcacgatatc
      661 ataaaaaaat acaatcatct tagcatttcg tataaaaaat ttataaaatt aaaatatcaa
      721 attgatgcga aattaaattt cttaaatgaa atggtttaca atgtaaaaat atacataaaa
      781 gccgaaaata tcggagagga taatttttta
//
LOCUS       DAEDTT010000179          795 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.182, whole genome shotgun sequence.
ACCESSION   DAEDTT010000179 DAEDTT010000000
VERSION     DAEDTT010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.182"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..678
                     /gene="ung"
                     /locus_tag="KLC54_001690"
     CDS             <1..678
                     /gene="ung"
                     /locus_tag="KLC54_001690"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HBD9178048.1"
                     /translation="NIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQNIIIYPP
                     ANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNVFKELQN
                     DLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHKLSNEKS
                     GLVFMLWGNYAKNKEILIDNAKHLILKAAHPSPLARTGFLGCKHFSKANEFLKKVGKI
                     PIDWKIV"
BASE COUNT          326 a           99 c          112 g          258 t
ORIGIN      
        1 aacatagata agattaaaat aaatgatgac tggaaagaat ttttaagaga cgaatttcaa
       61 aaaaaatatt ttctagaaat caaaaaacaa tacctaaatg cgattaatca aaatataatt
      121 atttatccac ctgcaaattt aatctttaat gcttttaatt tatgtccttt aaaagaaatt
      181 aaaattatta tcctaggaca agatccttat catcaaccaa atcaagcaat ggggcttagt
      241 ttttcggttc caaaaaatgt aaaaatccca ccaagtctta ataatgtttt taaagaattg
      301 caaaatgatt taaacatcac cccagcaaaa agcggagatt taagctcttg ggcaaaacaa
      361 ggagttttgc tcttaaattc tattcttagc gttgaagcaa ataaagcagc tagccatagt
      421 tcgtggggtt ggcaagaatt tagtgatgct ataatacata aattaagcaa tgaaaaatca
      481 gggcttgttt ttatgctttg gggaaattac gcaaaaaaca aggagatttt gattgataat
      541 gctaagcatt tgattttaaa agcagcccac ccaagccctt tagctagaac aggattttta
      601 ggttgtaagc atttttcaaa ggctaatgaa tttttaaaaa aagttggtaa aattcctata
      661 gattggaaaa tagtttaaaa aattatttta aattttaata aaaatattaa aatatattta
      721 tttatttaaa aataaatcat atttctatga aatatattgt aataaaataa ctcaaaaatt
      781 aattcttaag gagaa
//
LOCUS       DAEDTT010000180          718 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.183, whole genome shotgun sequence.
ACCESSION   DAEDTT010000180 DAEDTT010000000
VERSION     DAEDTT010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 718)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.183"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>718
                     /locus_tag="KLC54_001691"
     CDS             <1..>718
                     /locus_tag="KLC54_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3971 domain-containing protein"
                     /protein_id="HBD9178049.1"
                     /translation="RASGELLDFNASISYKDKNLAYKIEDLNIRNIMEIFKRVNKRIE
                     LPQSLNLWVAYRAKGEFYHLDYLQGFIDFAKDNYYLDNISASGYVNNVKVRLDDKMNA
                     IEIPKLDLNLNKQKLDFVFNKAFYNGADLSSSKVYLYDLFDEKKAGIYLRIKSDNLKF
                     DEKLAKALEDYYFSLPFYQKSGKIKSDLELKIDFHDKGEISYSGILALENASISLADF
                     NITKAFVKLNQNDLNIENASV"
BASE COUNT          269 a           64 c          120 g          265 t
ORIGIN      
        1 tagagcaagt ggagaattgc ttgactttaa cgcaagtatc tcttacaaag ataaaaattt
       61 agcttataaa atagaagatt taaacattag aaatattatg gaaattttta aaagagttaa
      121 taaaagaata gaacttccgc agagtttaaa tctttgggta gcatataggg ctaagggaga
      181 attttatcat ttagattatt tgcaaggttt tatagatttt gctaaagata attattattt
      241 agacaatatt agtgcatcag gttatgttaa taatgtcaaa gttcgtttgg atgataaaat
      301 gaatgctatt gaaattccaa aactcgattt aaatttaaac aaacaaaagc ttgattttgt
      361 ctttaataaa gctttctata atggtgctga tttaagttct agtaaggttt atctatatga
      421 tttgtttgat gaaaaaaaag ctgggattta tttgcgcatt aagtctgata atctaaaatt
      481 tgacgaaaaa cttgctaaag ctttagagga ttattatttt tcattacctt tttatcaaaa
      541 aagcggaaaa attaaaagtg atttagagct taaaattgat tttcatgata agggtgaaat
      601 ttcttatagt ggtattttag ctttagagaa tgctagtatt tctttggctg attttaatat
      661 tacaaaagca tttgtaaaat taaatcaaaa tgatttaaat atagaaaatg ctagtgtt
//
LOCUS       DAEDTT010000181          662 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.185, whole genome shotgun sequence.
ACCESSION   DAEDTT010000181 DAEDTT010000000
VERSION     DAEDTT010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.185"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..>662)
                     /locus_tag="KLC54_001692"
     CDS             complement(<1..>662)
                     /locus_tag="KLC54_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006751.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HBD9178050.1"
                     /translation="DTTGVQASKDENGKLVLTSADGRGIKITGDIGVGSGILANQKEN
                     YGRLSLVKNDGRDINISGTNLSAIGMGTTDMISQSSVSLRESKGQISATNADAMGFNS
                     YKGGGKFVFTQNVSSISAFMSAQGSGFSRGSGFSVGSGKNLSVGLSQGIQIISSAASM
                     SNTYVVSAGSGFSSGSGNSQFAALKTTAANTTDETAGVTTLKGAMAVMDIAETAITNL
                     DQ"
BASE COUNT          209 a          145 c           96 g          212 t
ORIGIN      
        1 ttgatctaga tttgttatag cagtttctgc tatatccata accgccattg cacctttaag
       61 agtggttaca cctgcagtct catcagttgt attagcagca gtagttttaa gggctgcaaa
      121 ttgagaattt cctgagccag aagaaaatcc tgaacctgct gaaacaacat aagtattgct
      181 cattgaagcc gcacttgaaa taatttgtat tccttgactc aatccaacag ataaattttt
      241 accactaccc acagaaaatc ctgaacctct agaaaatcct gaaccttgtg cactcataaa
      301 tgcagaaatt gaacttacat tttgagtaaa aacaaatttt ccaccacctt tataagaatt
      361 aaatcccata gcatcggcat tggttgctga aatttgacct tttgattctc ttaaagacac
      421 tgaagattga gaaatcatat ctgttgtacc catacctata gcactaagat tggttccact
      481 tatattgata tctctaccat catttttaac taaagataat cgcccatagt tttctttttg
      541 atttgccaaa ataccagaac caacacctat atctccagta attttaatac ccctgccatc
      601 agccgatgta agaacaagct tgccgttttc atctttagaa gcttgaactc ctgtggtatc
      661 tt
//
LOCUS       DAEDTT010000182          653 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.186, whole genome shotgun sequence.
ACCESSION   DAEDTT010000182 DAEDTT010000000
VERSION     DAEDTT010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.186"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>653
                     /locus_tag="KLC54_001693"
     CDS             <1..>653
                     /locus_tag="KLC54_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HBD9178051.1"
                     /translation="NCNFKKEVYLNFQECLDIFQMDNCVFEDRVTIKGKFNDNVYFNN
                     SIFKNYADFHECEFEKTASFYRVRFDKTPNFSQAIFKGNLNVVNINLNFTFDDLQERV
                     KQECTSYESQRTTKKAGVIPNLYQEKSLDKFANDFRDSFRTFKNALIKDNNLLDASNF
                     HKYELYCKEIELKQNWDKKGENVKNTTDLEKNVSRIRDFVDFLLLGFYRKLCDHHTD"
BASE COUNT          258 a           68 c          101 g          226 t
ORIGIN      
        1 aattgtaatt ttaaaaaaga agtttattta aattttcaag aatgcttaga tatttttcaa
       61 atggataatt gtgtatttga agatagggtt accattaaag gaaaatttaa cgataatgtt
      121 tatttcaata attctatttt taaaaattac gctgatttcc acgagtgtga atttgaaaaa
      181 acagctagtt tttatcgagt gagatttgat aaaactccaa atttttctca agcgattttc
      241 aaaggaaatt taaatgtggt taatataaat ttaaatttta cttttgatga tttacaagag
      301 agagtcaaac aagaatgcac ttcttacgaa agtcaaagaa caactaaaaa agcaggcgtt
      361 ataccaaatt tatatcaaga aaaatcctta gataaatttg ccaatgattt tagagattct
      421 tttaggactt ttaaaaatgc tttgataaaa gataacaatc ttttagacgc ttcaaatttt
      481 cataaatacg agctttattg taaagagata gagctaaaac aaaattggga taaaaaaggt
      541 gagaatgtaa aaaatacgac agatttagaa aaaaatgttt cgagaattcg ggattttgtg
      601 gattttttac ttttaggatt ttatagaaaa ctttgcgatc atcacacaga ctt
//
LOCUS       DAEDTT010000183          653 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.187, whole genome shotgun sequence.
ACCESSION   DAEDTT010000183 DAEDTT010000000
VERSION     DAEDTT010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.187"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..>653)
                     /locus_tag="KLC54_001694"
     CDS             complement(<1..>653)
                     /locus_tag="KLC54_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HBD9178052.1"
                     /translation="KRHSFCVLKLLLDSGILKDLCKPFWTVRFLSDEEGNYSFDEQVF
                     LMLSEFEKYEDELEILQKLKTDEKMILKLVILLSAIESENEISLAGIYRAYCSKFDLK
                     NEILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVSKLENLENLELLYTLTWLKAKA
                     LNYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKELTLKRSKIFLEQDEILQDK"
BASE COUNT          220 a          117 c           61 g          255 t
ORIGIN      
        1 attttatctt gcaaaatttc atcttgctct aaaaaaatct tacttctttt aagtgttaat
       61 tcttttttta ctcttcttgc gctttcttca agtagatttt catcttcaaa accttgtttt
      121 gcattttcta aaagtttatc aagaactcta aaataaaaag cattataatt taaagcctta
      181 gcctttagcc aagttaaagt gtataaaagc tctaaatttt ctaaattttc tagcttagaa
      241 accaagctac ttacaacaat aggattgtat atatcttctt tttctacaag atcttttaag
      301 gcattattgt ttttaaatat cttaagaccc cattctaaaa tttcattctt taaatcaaat
      361 ttggagcaat acgctctata tatgcctgct aaagaaattt cattttcact ttctatagcg
      421 cttaaaagta tcacaagctt taaaatcatt ttttcatcgg ttttaagttt ttggagtatc
      481 tcaagctcat cttcgtattt ttcaaattca cttaacataa gaaaaacttg ctcatcaaaa
      541 ctataatttc cttcttcatc gcttaaaaaa cgaactgtcc aaaaaggctt gcataaatct
      601 tttaaaattc cactatcaag caaaagtttt aaaacacaaa aactatgcct ttt
//
LOCUS       DAEDTT010000184          552 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.191, whole genome shotgun sequence.
ACCESSION   DAEDTT010000184 DAEDTT010000000
VERSION     DAEDTT010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.191"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..267
                     /locus_tag="KLC54_001695"
     CDS             <1..267
                     /locus_tag="KLC54_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron protein, hemerythrin family"
                     /protein_id="HBD9178053.1"
                     /translation="EWLLEHILHHDVMIGKWIKAHNKNTKEEETKQEELTEDSQEKLE
                     FIYSCPCKTTHALSYNEHLDILYHNKNLKCKNCQQTLFYFKNPI"
     gene            277..537
                     /locus_tag="KLC54_001696"
     CDS             277..537
                     /locus_tag="KLC54_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HBD9178054.1"
                     /translation="MLPKWDKTFSVHNAKIDEQHKKLFELAGKVEYLIDKPVYKDEIK
                     NLLAEFFNYMKDHFYEEERYMELIKYPDIETHKKFINILSNP"
BASE COUNT          241 a           73 c           76 g          162 t
ORIGIN      
        1 gagtggcttt tagaacacat attacatcat gatgttatga taggcaaatg gattaaagct
       61 cacaataaaa acactaaaga agaagaaaca aaacaagaag aattaacaga ggattctcaa
      121 gaaaaattag aatttatata ttcttgtcct tgtaaaacca ctcatgcttt atcatacaat
      181 gaacacttag atattttata tcacaataaa aatttaaagt gcaaaaattg ccaacaaacc
      241 ttattttatt ttaaaaatcc aatataaagg aataaaatgc taccaaaatg ggataaaacc
      301 tttagtgtcc ataatgccaa aatagatgaa cagcacaaaa agctttttga acttgcgggt
      361 aaggtagaat atttgattga taaacccgtt tataaggatg agattaaaaa tttacttgct
      421 gaatttttta attatatgaa agatcatttt tatgaagaag agcgatacat ggaactgatt
      481 aaatatccag atattgaaac acataaaaaa ttcataaaca tattatccaa tccatgatag
      541 aactgattaa aa
//
LOCUS       DAEDTT010000185          543 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.192, whole genome shotgun sequence.
ACCESSION   DAEDTT010000185 DAEDTT010000000
VERSION     DAEDTT010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 543)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.192"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>543
                     /locus_tag="KLC54_001697"
     CDS             <1..>543
                     /locus_tag="KLC54_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HBD9178055.1"
                     /translation="PYQVIFKNIDKLGKTFYLETLLIPILDKNNELIEIVAFSHDVSN
                     SFKLNEELALNHAKLRELSINLENTVKNHQQEFIQLGKKFEKKMQIALEKNEKDIKIV
                     YEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDEKGFAEIYSQSKDMIKNM
                     SETIDVFRTLFNKGVEQCVF"
BASE COUNT          224 a           57 c           86 g          176 t
ORIGIN      
        1 accttatcaa gttattttta aaaatattga taaattaggc aaaactttct atcttgaaac
       61 tttattaatc cccatattgg ataaaaataa tgaattaata gaaatagtag cattctctca
      121 tgatgttagt aattctttta agcttaatga agagcttgct ctaaatcacg ctaaattaag
      181 agaattaagt attaatcttg aaaatacagt taaaaatcac caacaggaat ttatacagtt
      241 aggtaaaaaa tttgagaaaa aaatgcaaat tgccttggaa aaaaatgaaa aagatattaa
      301 aatagtctat gaagagattt tgaaatcttc attagagcaa atgattagtg atatagctca
      361 tcaatggagg caaccgttaa atgagcttgg tattgctatg tttcaaatga aacaaaatct
      421 taaagatgaa aaaggatttg ctgagattta ttcacaatca aaagatatga ttaaaaatat
      481 gtcagaaaca attgatgtgt ttagaacttt gtttaataag ggggtagaac agtgtgtatt
      541 tat
//
LOCUS       DAEDTT010000186          528 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.193, whole genome shotgun sequence.
ACCESSION   DAEDTT010000186 DAEDTT010000000
VERSION     DAEDTT010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.193"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>528
                     /locus_tag="KLC54_001698"
     CDS             <1..>528
                     /locus_tag="KLC54_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178056.1"
                     /translation="SNEILKPYLTKNAEVSKSGLLMNFIYHDIKTQNEKEFNFFMKPA
                     TLELSSHQNLQKILKGETDIEDYIKKENEKKMSFDLYLYVNGVDKKTSTQDKLSVFFQ
                     QYINYQKDMDLREFANSSSIFQIYIDQNRNDFDALKKQYQNQSQDTQRLEEANQLRSS
                     SIENFLDRRQKQANIN"
BASE COUNT          234 a           75 c           61 g          158 t
ORIGIN      
        1 tctaatgaaa ttttaaaacc ttatttaact aaaaatgcag aagtatcaaa atctggtctt
       61 ttaatgaatt ttatctacca tgatataaaa actcaaaacg aaaaagaatt taactttttt
      121 atgaaacctg ccactttaga actaagctct catcaaaatt tacaaaaaat tctcaagggt
      181 gaaacagata tagaagatta catcaaaaaa gaaaatgaaa aaaagatgag ttttgatctt
      241 tatctttatg ttaatggcgt agataaaaaa acaagcactc aagacaaact atctgtattt
      301 tttcaacaat atattaacta ccaaaaagat atggatttaa gagaatttgc aaattcaagt
      361 tcaatatttc aaatttatat cgatcaaaat cgcaatgatt ttgatgctct taaaaaacaa
      421 tatcaaaacc aaagtcaaga tacgcaaaga ttagaagaag caaatcaact acgttctagc
      481 tctatagaaa attttttaga tcgtcgtcaa aaacaagcaa atataaat
//
LOCUS       DAEDTT010000187          519 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.194, whole genome shotgun sequence.
ACCESSION   DAEDTT010000187 DAEDTT010000000
VERSION     DAEDTT010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 519)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.194"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            35..445
                     /gene="perR"
                     /locus_tag="KLC54_001699"
     CDS             35..445
                     /gene="perR"
                     /locus_tag="KLC54_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HBD9178057.1"
                     /translation="MELLQMLKKHELKATPQRLCVLKILKRHEHPNIDELYTEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCTKCGGIEDLSFKD
                     AKLYEYQEHLEKKIGNLVNHLSVCAYVDSCKKCH"
BASE COUNT          209 a           59 c           78 g          173 t
ORIGIN      
        1 ttatttttac ttaaaaaagc aaggaataaa taaaatggaa ttactacaaa tgcttaaaaa
       61 acatgagtta aaagctactc cgcaaagact atgtgtttta aaaattttaa aaagacatga
      121 gcatcctaat attgatgaat tatatacaga aattaaaaaa gaataccctt caatctcttt
      181 agcgacggtt tataaaaatc ttaatacttt acaagaacaa ggtttagttg ttgaaatcaa
      241 tgttttaaat caaaaaactt gttacgatat ctatgaagaa gaacatattc atgttgtttg
      301 caccaaatgt ggtggtatag aggatttaag ttttaaagat gctaagcttt atgaatatca
      361 agagcattta gaaaaaaaga taggcaatct cgtcaatcat ctgtctgttt gtgcttatgt
      421 tgatagttgc aaaaagtgtc attaagcaaa ataaggttaa aataacccat atattttaag
      481 ggttatttta atggtttatg aaattcaaaa aaacttttt
//
LOCUS       DAEDTT010000188          512 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.195, whole genome shotgun sequence.
ACCESSION   DAEDTT010000188 DAEDTT010000000
VERSION     DAEDTT010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.195"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>512
                     /gene="pglK"
                     /locus_tag="KLC54_001700"
     CDS             <1..>512
                     /gene="pglK"
                     /locus_tag="KLC54_001700"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HBD9178058.1"
                     /translation="NAFILVKILSPIIKKAGLRREEAMKNFFEILNTNLNNFKFIKLK
                     TKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVVFLVLKNESDI
                     SGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLNIIYQNLRQEEENLGEGKLS
                     FNQELKICNL"
BASE COUNT          179 a           62 c           84 g          187 t
ORIGIN      
        1 taaatgcttt tattttagtg aaaattttaa gccctatcat taaaaaagca ggactaagac
       61 gcgaagaagc gatgaaaaat ttcttcgaaa ttttaaatac aaatttaaat aattttaaat
      121 ttatcaagct taaaaccaaa gaagatggag tattaagtct ttttaaagca caaagtgaag
      181 ctttttctaa agcaaatatt accaatgaaa gcgtagctgc ggtgcctaga atttatcttg
      241 aaggaatagg cttttgtgtg cttgttttta tcgtggtatt tttggttttg aaaaatgaaa
      301 gtgatatttc aggtatttta tccacgattt ctatttttgt tttagcgctt tatcgcttaa
      361 tgccaagcgc aaatcgtatt atcacaagtt atcatgattt gctttattat cattcttctt
      421 tgaatattat ttatcaaaat ttaagacaag aagaagaaaa tttgggcgag ggaaaattaa
      481 gttttaatca agagcttaaa atttgcaatc tt
//
LOCUS       DAEDTT010000189          502 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.196, whole genome shotgun sequence.
ACCESSION   DAEDTT010000189 DAEDTT010000000
VERSION     DAEDTT010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 502)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.196"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            116..>502
                     /locus_tag="KLC54_001701"
     CDS             116..>502
                     /locus_tag="KLC54_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HBD9178059.1"
                     /translation="MTYNEKIISMNNDLLDHQHKELFEISKKLSLMNQRHVGTKELKI
                     VLRELLIMINRHFSDEEAFMREIEYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVKYYEE"
BASE COUNT          223 a           57 c           58 g          164 t
ORIGIN      
        1 taaattataa atactttaat aataataatt tttatataat taattaataa aattttaagt
       61 attatagcat tataatccgc tctcgaaaaa tataaatata aaagtactca aaaccatgac
      121 ttataatgaa aaaattattt cgatgaataa tgatctttta gatcatcaac ataaagaact
      181 ttttgaaatt tctaaaaaac tctctttaat gaaccaacgt catgttggaa caaaagagtt
      241 aaaaattgtc ttaagagagt tgttgataat gatcaataga catttttcag atgaagaagc
      301 ctttatgaga gaaatagaat atccttatat caaccatcat acaagaattc atagaaaaat
      361 tatcttagaa attgaagaaa ttatcatcag tgaagctaaa tttgtaaata taatgaccga
      421 aaaattaaat ctcgttgttc aagattttat ctttaaacat acagccaaag aagattcaaa
      481 gatagtaaag tattacgaag aa
//
LOCUS       DAEDTT010000190          485 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.197, whole genome shotgun sequence.
ACCESSION   DAEDTT010000190 DAEDTT010000000
VERSION     DAEDTT010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.197"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>485
                     /locus_tag="KLC54_001702"
     CDS             <1..>485
                     /locus_tag="KLC54_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HBD9178060.1"
                     /translation="IEAKIIFYGPAGTGKTMSALAMAKSMKKSVLSFDCSKILSKWVG
                     ESEQNVRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRVDGSSGSDKMHNQMQNIFLE
                     QIERFSGVIIATTNFLESLDSAFSRRFDYKIEFKKPDFKDRLKIWEKFLPKKALFEKD
                     F"
BASE COUNT          180 a           51 c           90 g          164 t
ORIGIN      
        1 atagaagcta aaattatttt ttatggtcct gctggtactg gaaaaactat gtcagcttta
       61 gctatggcta aatcaatgaa aaaatctgtt cttagttttg actgttctaa aattttgagc
      121 aaatgggttg gagagagtga gcaaaatgta agaaaaattt ttgatactta taaaaatatc
      181 gtgcaaactt gtaaacaaag tcctatttta cttctcaatg aagctgatca gtttttaagt
      241 acgcgtgtag atggaagtag tggtagtgat aaaatgcata atcaaatgca aaatatattc
      301 ttagagcaaa ttgagcgttt tagtggtgtg attatcgcta cgacaaattt tttagaaagc
      361 ttagatagtg cattttcaag aagatttgat tataagatag aatttaaaaa acctgatttt
      421 aaagataggc ttaaaatttg ggaaaaattt ctacctaaaa aagcattatt tgaaaaagat
      481 tttga
//
LOCUS       DAEDTT010000191          481 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.198, whole genome shotgun sequence.
ACCESSION   DAEDTT010000191 DAEDTT010000000
VERSION     DAEDTT010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 481)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.198"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            63..>481
                     /locus_tag="KLC54_001703"
     CDS             63..>481
                     /locus_tag="KLC54_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178061.1"
                     /translation="MSIFSINDNSNYNSILSQSKANKESKENSKISFANAFLKQNASK
                     LNEIQSANSQTLARSEVLNSTNTTNTSNNTNFSISSKTSSPNYDISSEFKNSIYTLKY
                     KQADISNNTAYGYSVDKDGYMGSDFNKAAGLPEDFKI"
BASE COUNT          208 a           56 c           64 g          153 t
ORIGIN      
        1 ttgcttatat tattttaata tatttagatt gaaggcaaaa aaatctaaat caaggaatta
       61 atatgagtat ctttagtatc aatgataact caaactataa ttctatactt tcacaaagta
      121 aagccaataa agaaagtaaa gaaaattcta aaataagttt tgctaatgct tttttaaaac
      181 aaaatgctag taagttaaat gaaattcaaa gtgcaaattc acaaactcta gcaagaagtg
      241 aagtattaaa ttctactaat acaacaaata ctagcaataa cactaatttt agtataagta
      301 gtaagacaag ttctcctaat tatgatatat ctagtgaatt taaaaactct atttatactc
      361 taaaatataa acaagcagat ataagtaata atacagccta tggttatagt gtagataaag
      421 atggctatat gggaagtgat tttaacaaag ctgcaggatt gcctgaagat tttaagatac
      481 a
//
LOCUS       DAEDTT010000192          450 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.199, whole genome shotgun sequence.
ACCESSION   DAEDTT010000192 DAEDTT010000000
VERSION     DAEDTT010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.199"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..446)
                     /gene="cetC"
                     /locus_tag="KLC54_001704"
     CDS             complement(<1..446)
                     /gene="cetC"
                     /locus_tag="KLC54_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HBD9178062.1"
                     /translation="MSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKSHNIVR
                     HEDMPRTVFKCLWDYIQKGDEIFAFVKNKAKDGNFYWVFANVSASFDTNGNIINYYSV
                     RRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTY"
BASE COUNT          163 a           74 c           51 g          162 t
ORIGIN      
        1 ttataagtca ttttataaga acttacaata tccattaaag ctgaaactcc agcattaatg
       61 cccgattttt gctctttttc aagtaaaatt ttataaactt cttcaattat agaaagagat
      121 tttctattag gtgcacgacg aacagaataa taattgatga tatttccatt agtatcaaat
      181 gaagcactta catttgcaaa aacccagtaa aaattaccat ctttggcttt atttttcaca
      241 aatgcaaaaa tttcatctcc tttttgaata taatcccaaa gacatttaaa tacagtgcgt
      301 ggcatatctt catgtcttac tatattatga gatttataca aaagttcatc aactttataa
      361 cctgcgtatt ttaaaaagtc attattggca taaatgatat tccccttaag atctgtttta
      421 gaagtaatta aagcattttc agacaaaact
//
LOCUS       DAEDTT010000193          431 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.202, whole genome shotgun sequence.
ACCESSION   DAEDTT010000193 DAEDTT010000000
VERSION     DAEDTT010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.202"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..>431)
                     /locus_tag="KLC54_001705"
     CDS             complement(<1..>431)
                     /locus_tag="KLC54_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HBD9178063.1"
                     /translation="YYLFMRYNCLTSVGLSLKRDVFEKLYPLPNSMCNYQDMKMHIDI
                     LNIGEIKILETQLIRYRRTRDKTNISSHNSITTTRENLETEMLLDTYLKFDNIFLLEQ
                     IFHKEVNKTNIKPYQETLPFFLGIMALESDNIYKKYWGYHK"
BASE COUNT          138 a           53 c           54 g          186 t
ORIGIN      
        1 ttttatgata accccaatat tttttatata tgttgtcaga ttctaaagcc attattccta
       61 aaaaaaaagg caatgtctct tgataaggtt ttatatttgt tttatttact tctttatgaa
      121 aaatttgctc taataaaaat atattatcaa attttaagta agtatctaag agcatttctg
      181 tttctaggtt ttctcgagtt gttgtgatgc tattatgaga acttatattt gttttgtccc
      241 tagttcttct gtatcttata agttgtgttt caagtatttt aatttcgcca atatttaata
      301 tatcaatatg catcttcata tcttgatagt tgcacattga atttggtaaa ggatataatt
      361 tttcaaaaac atctcttttt aaagataatc caactgatgt taagcagttg tatcgcataa
      421 ataaataata t
//
LOCUS       DAEDTT010000194          419 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.203, whole genome shotgun sequence.
ACCESSION   DAEDTT010000194 DAEDTT010000000
VERSION     DAEDTT010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 419)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.203"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>419
                     /locus_tag="KLC54_001706"
     CDS             <1..>419
                     /locus_tag="KLC54_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HBD9178064.1"
                     /translation="GLTSFFDFINHKTKNVSTIEVKSNDEFGQISSAINENILATKRG
                     LEQDNQAVKESVETVSVVESGNLTARITANPRNPQLIELKNVLNKLLDVLQARVGSDM
                     NAIHKIFEEYKSLDFRNKLENASGSVELTTNALGDEI"
BASE COUNT          169 a           55 c           67 g          128 t
ORIGIN      
        1 caggtttaac ttcattcttt gattttatca atcataaaac aaaaaatgtt tctactatag
       61 aagtaaaaag caatgatgaa tttggacaaa tctcaagtgc tatcaatgaa aacattcttg
      121 ctactaaaag aggtttagaa caagacaatc aagccgttaa agaatcggtt gaaacagtat
      181 cagttgtaga aagtggtaat ttaacagcaa gaattactgc taatccaaga aacccacaac
      241 ttattgaact taaaaatgtt ctaaataaac ttcttgatgt tttacaagct agagtaggtt
      301 ctgatatgaa tgctattcat aaaatttttg aagaatacaa aagcttagac tttagaaata
      361 aattagaaaa tgctagcggt agtgtagaat taactactaa tgctttaggt gatgaaata
//
LOCUS       DAEDTT010000195          414 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.204, whole genome shotgun sequence.
ACCESSION   DAEDTT010000195 DAEDTT010000000
VERSION     DAEDTT010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.204"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..180
                     /locus_tag="KLC54_001707"
     CDS             <1..180
                     /locus_tag="KLC54_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178065.1"
                     /translation="PIYTQSVHNESQRQNKILSWIYANESLIETIIDLIESQNTRLKK
                     AIIPLQDELEKRSLI"
     gene            complement(212..>414)
                     /locus_tag="KLC54_001708"
     CDS             complement(212..>414)
                     /locus_tag="KLC54_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HBD9178066.1"
                     /translation="QNQLQVTINNITVTQVNVKAAESTIRDVDFASESANFSKYNILA
                     QSGSYAMSQANAVQQNVLKLLQ"
BASE COUNT          153 a           59 c           62 g          140 t
ORIGIN      
        1 cctatttata cccaaagtgt tcataatgaa agtcaaagac aaaataaaat tttatcttgg
       61 atttatgcta acgaatcctt aattgaaact ataatagatc ttatagaaag tcaaaataca
      121 agattaaaaa aagctattat tcccttacag gatgagctag aaaaaagaag cttaatctaa
      181 aactaaagag caaaattgct ctttagaaag attattgtaa tagttttaaa acattttgct
      241 gtacagcgtt agcttgactc atagcatatg agcctgattg tgcaagaatg ttatatttag
      301 aaaaattcgc actctcactt gcaaagtcta catctcttat ggttgattcg gctgctttaa
      361 catttacctg agttacagta atattgttta tagtaacttg aagttgattt tgta
//
LOCUS       DAEDTT010000196          406 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.205, whole genome shotgun sequence.
ACCESSION   DAEDTT010000196 DAEDTT010000000
VERSION     DAEDTT010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.205"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>406
                     /locus_tag="KLC54_001709"
     CDS             <1..>406
                     /locus_tag="KLC54_001709"
                     /EC_number="5.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HBD9178067.1"
                     /translation="ESTITYYKTINQAINDKLKSLNSAKILLYSVNFEEIENLQSQDK
                     WQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPILHIAKSSAKALKQ
                     ENIQKIGLLGTKYTMTQDFYKKILIEENISVIT"
BASE COUNT          176 a           49 c           53 g          128 t
ORIGIN      
        1 ttgaaagcac tattacttat tataaaacaa taaatcaagc tataaatgat aaattaaaat
       61 ctttaaattc tgcaaaaatt ttactttaca gtgttaattt tgaagaaata gaaaatttac
      121 aaagccaaga taaatggcaa gaagctgcac aaattttgac tcaatgtgct aaaaaattag
      181 aacttgcagg ggctaatttt ataataattg caactaatac tatgcataag gtttttgatg
      241 aaattcaaca aaatataaat atccctattt tgcatattgc aaaaagttct gctaaggctt
      301 taaaacaaga aaacatacaa aaaattggtt tattgggtac taaatacaca atgacgcagg
      361 atttttataa aaaaatactg attgaagaaa atattagcgt tattac
//
LOCUS       DAEDTT010000197          384 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.207, whole genome shotgun sequence.
ACCESSION   DAEDTT010000197 DAEDTT010000000
VERSION     DAEDTT010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.207"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>384
                     /locus_tag="KLC54_001710"
     CDS             <1..>384
                     /locus_tag="KLC54_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178068.1"
                     /translation="PDSFLKDILKICIKETIIHINVPNSNSFHLLWAYESGLINKLGN
                     LTNTAIKFQQNTTFDLNKLTQFVKNHIGGAGCILDSGSYFIKPFNHSKMSLCLENGII
                     DEKLLDGLYKLNDYMHEFGAEIFVN"
BASE COUNT          147 a           40 c           57 g          140 t
ORIGIN      
        1 tcctgatagt tttttaaaag atattttaaa aatatgtatt aaagaaacta taattcatat
       61 aaatgtcccg aattcaaatt cttttcattt gctttgggct tatgagagtg gtttgataaa
      121 taaacttgga aatttgacaa atacagccat aaaatttcaa caaaatacaa catttgattt
      181 aaataaactc acacaattcg taaaaaatca tattggcggg gcggggtgta tattagatag
      241 tggttcgtat tttataaaac cttttaatca ttctaaaatg tcattatgct tagaaaatgg
      301 aattatagat gaaaaattac tagatggttt atacaaatta aatgattata tgcatgaatt
      361 tggtgctgaa atttttgtaa atat
//
LOCUS       DAEDTT010000198          374 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.208, whole genome shotgun sequence.
ACCESSION   DAEDTT010000198 DAEDTT010000000
VERSION     DAEDTT010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.208"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..163)
                     /locus_tag="KLC54_001711"
     CDS             complement(<1..163)
                     /locus_tag="KLC54_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HBD9178069.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKHSIF"
     gene            complement(160..>374)
                     /locus_tag="KLC54_001712"
     CDS             complement(160..>374)
                     /locus_tag="KLC54_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HBD9178070.1"
                     /translation="IANAMSKQNIFKGILVMMIFGISTLPAMLFFSKISQFFSDFLKN
                     LFNYLSYGVIVCYGMNLAYIGFKAFQ"
BASE COUNT          155 a           61 c           33 g          125 t
ORIGIN      
        1 taaatattga atgttttttt cctataagct cttttttact atatccactt atttgacaaa
       61 gcttatcact gacaaaaatt aaatttcctt gaacatcagc tcttgaaaaa attgtatttt
      121 tttcaagagc tttaaaaaac tgatctttaa aaaaatcttt cattgaaaag ccttaaaacc
      181 tatataggca agattcatac cgtaacaaac aataacgcca tacgataaat aattaaacaa
      241 atttttcaaa aaatcactaa aaaactgtga aattttagaa aaaaataaca tcgcaggtaa
      301 agttgatatc ccaaaaatca tcattaccaa aataccttta aaaatatttt gcttactcat
      361 tgcattggct ataa
//
LOCUS       DAEDTT010000199          371 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.209, whole genome shotgun sequence.
ACCESSION   DAEDTT010000199 DAEDTT010000000
VERSION     DAEDTT010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.209"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            complement(<1..>371)
                     /locus_tag="KLC54_001713"
     CDS             complement(<1..>371)
                     /locus_tag="KLC54_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178071.1"
                     /translation="ERVAEYNVSDIREYLGVDKYYSNIDMAETIKQYYNLFSNALGQS
                     FPSDKTSFSEADINSMPSGYGVSGTQWMDFNDPSNRMNITGLKDFSNSLISNVYKTHE
                     QAKEADDLWVDSGYMIDGLLP"
BASE COUNT          124 a           70 c           41 g          136 t
ORIGIN      
        1 ttaggcaata atccatcaat catatatcct gaatcaaccc aaagatcatc agcttctttt
       61 gcttgttcat gggttttata aacatttgaa attaaagaat ttgaaaaatc ttttaaacct
      121 gtaatattca ttctattgct tggatcatta aagtccatcc attgcgttcc acttacacca
      181 taaccactag gcatagaatt tatatctgct tcactaaaac ttgttttatc acttggaaaa
      241 ctttgaccta aagcattaga aaaaagattg tagtattgtt ttatggtttc agccatatct
      301 atattagaat aatatttatc tacacctaga tattctctta tatcagaaac attatattca
      361 gccactctct c
//
LOCUS       DAEDTT010000200          325 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.216, whole genome shotgun sequence.
ACCESSION   DAEDTT010000200 DAEDTT010000000
VERSION     DAEDTT010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.216"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            68..>325
                     /locus_tag="KLC54_001714"
     CDS             68..>325
                     /locus_tag="KLC54_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HBD9178072.1"
                     /translation="MDKLIPVWDEKYSINDEKIDAQHQKLFELAAKIENAVYKFVQRD
                     ELKEILTELFNYMKEHFSNEEDYMQEIHYPYLNEHKIMHKNI"
BASE COUNT          142 a           29 c           44 g          110 t
ORIGIN      
        1 ttaaatttaa aatgtgtaat atatcattaa taatatatat taaacttttg ttttggaagt
       61 aaagatcttg gataaattaa ttcctgtttg ggatgaaaaa tatagtatca atgatgagaa
      121 aatagatgct caacatcaaa aactttttga acttgcagca aaaatagaaa atgcggttta
      181 taaatttgtt caaagagatg agttaaaaga aattttaaca gaacttttta actatatgaa
      241 agaacatttt agtaatgaag aagattatat gcaagaaatt cattatcctt atttaaatga
      301 acacaaaatc atgcataaaa atatc
//
LOCUS       DAEDTT010000201          294 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.217, whole genome shotgun sequence.
ACCESSION   DAEDTT010000201 DAEDTT010000000
VERSION     DAEDTT010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 294)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 294)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.217"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>294
                     /locus_tag="KLC54_001715"
     CDS             <1..>294
                     /locus_tag="KLC54_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178073.1"
                     /translation="LNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDFSKNNRLI
                     IDTQDVKSEVVNNFENFTFILPNKIKNPILTIEKLINLPANGSMEILTKNKPT"
BASE COUNT          122 a           40 c           33 g           99 t
ORIGIN      
        1 agttaaattt ctttaaagat gtaaatatcg atttgctttc tggttctgtt tttcatgaag
       61 taaataaaaa aggcaaaata atcactcaaa ttctaccgca tcaagaagat ttttctaaaa
      121 acaatcgttt gattatagat actcaagatg ttaaatcaga agtggtaaat aactttgaaa
      181 attttacttt tattttgcca aataaaataa aaaatcctat cttaactata gaaaaactta
      241 tcaatcttcc tgcaaatgga agtatggaaa ttcttactaa aaataaacca acaa
//
LOCUS       DAEDTT010000202          273 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.218, whole genome shotgun sequence.
ACCESSION   DAEDTT010000202 DAEDTT010000000
VERSION     DAEDTT010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 273)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 273)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..273
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.218"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..198
                     /locus_tag="KLC54_001716"
     CDS             <1..198
                     /locus_tag="KLC54_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HBD9178074.1"
                     /translation="DGGTLLYKINNQACVGIELTRHDSRMAMKIYGIENLDKECKLFI
                     QSPSFKDLSYTKKDFKWYYLE"
BASE COUNT          109 a           39 c           38 g           87 t
ORIGIN      
        1 gacggtggca ctttacttta caaaatcaac aatcaagctt gcgttggaat agaacttaca
       61 agacatgact caagaatggc tatgaaaata tacggaatag aaaatttgga taaagagtgc
      121 aaactattta tccaatcacc ttcttttaaa gatctttcct acacaaaaaa agattttaag
      181 tggtattatt tagaataaat aaatgcttta atttttaaat aaaaattttt aaaaatcgcg
      241 cttaaagtaa aagtatcttg ccttccaaga ttt
//
LOCUS       DAEDTT010000203          260 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.denovo.219, whole genome shotgun sequence.
ACCESSION   DAEDTT010000203 DAEDTT010000000
VERSION     DAEDTT010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.denovo.219"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            <1..>260
                     /locus_tag="KLC54_001717"
     CDS             <1..>260
                     /locus_tag="KLC54_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006751.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HBD9178075.1"
                     /translation="QSSKIGVTRFETGAQSFTSGVVGLTIKNYNGIEDFKFDNVVIST
                     SVGTGLGALAEEINKSADKTGVRATYDVKTTGVYAIKEGTTS"
BASE COUNT           88 a           39 c           54 g           79 t
ORIGIN      
        1 caatcttcta aaatcggtgt tacaagattt gaaaccggtg ctcaaagttt tacttcaggt
       61 gtggttggtc ttactattaa aaactacaat ggtatagaag attttaaatt tgataatgtt
      121 gtgatttcaa cttcagttgg aacaggactt ggagctttgg ctgaagagat caataaaagc
      181 gctgataaaa caggagttcg cgcaacttac gatgtaaaaa caactggcgt ttatgctata
      241 aaagaaggaa ctacttctca
//
LOCUS       DAEDTT010000204          910 bp    DNA     linear   BCT 26-MAY-2021
DEFINITION  TPA_asm: Campylobacter jejuni isolate IN_Cj_FI_012
            SAMEA4697446-rid12281113.guided.176, whole genome shotgun sequence.
ACCESSION   DAEDTT010000204 DAEDTT010000000
VERSION     DAEDTT010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA4697446
            Sequence Read Archive: ERR2601799
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
            Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 25-MAY-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001046733.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001046733.1
            Genome Coverage       :: 144x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/25/2021 21:12:41
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,718
            CDSs (total)                      :: 1,672
            Genes (coding)                    :: 1,647
            CDSs (with protein)               :: 1,647
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 21 of 25
            Pseudo Genes (incomplete)         :: 5 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA4697446-rid12281113.guided.176"
                     /isolate="IN_Cj_FI_012"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Finland"
                     /collection_date="2003"
                     /collected_by="Helsinki University"
     gene            106..879
                     /locus_tag="KLC54_001718"
     CDS             106..879
                     /locus_tag="KLC54_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HBD9178076.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
BASE COUNT          354 a           88 c          147 g          321 t
ORIGIN      
        1 atggttacaa ttttagaaaa tttcagttca tgttaaagga tatttaaaga aaataaagct
       61 ttaaaaagta ttttgtttaa aattatttaa atagaaagat attttatgaa aaaaataact
      121 ttatttttac ttttcttaaa tttagtgttt gggcaagata agatattaaa taattggttt
      181 aaagagtata atacaagcgg cacttttgtt ttttatgatg gaaaaacttg ggcgagtaac
      241 gacttttcaa gggctatgga gactttctct cccgcttcca cttttaaaat ttttaatgct
      301 ctaattgcac ttgatagtgg tgtgataaaa actaaaaaag aaatttttta tcactataga
      361 ggtgaaaaag tatttttatc ttcttgggcg caagatatga atttaagttc agctataaaa
      421 tattctaatg ttcttgcttt taaagaagtg gcaagaagaa ttggtatcaa aactatgcaa
      481 gaatatttaa acaagcttca ttatggtaat gctaaaattt ccaagatcga tactttttgg
      541 cttgacaact cactaaaaat aagcgctaaa gaacaagcaa ttttgctttt tagactttca
      601 caaaatagct tacctttttc tcaagaagca atgaatagtg ttaaggaaat gatttattta
      661 aaaaatatgg aaaatttaga gctttttgga aaaacaggtt ttaatgatga gcaaaaaatt
      721 gcttggattg taggttttgt gtatttaaaa gatgaaaata aatataaggc tttcgcgcta
      781 aatttagata ttgataaatt tgaagattta tataaaagag aaaaaatttt agaaaaatat
      841 ttagatgaac ttgtaaaaaa agttaaaaat gatggctagt gagtatttcg taaaatgcaa
      901 aaatacttaa
//
